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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP040564 Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-7699 chromosome, complete genome 6 crisprs csa3,PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,cas14j,DEDDh,DinG,RT 0 30 10 0
NZ_CP040565 Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-7699 plasmid pCFSAN059544, complete sequence 0 crisprs cas14j 0 0 1 0

Results visualization

1. NZ_CP040564
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040564_1 623933-624033 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040564_2 967380-968995 TypeI-E I-E
26 spacers
cas3,cas8e,cse2gr11,cas7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040564_3 985127-985951 TypeI-E I-E
13 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040564_4 986025-986602 TypeI-E I-E
9 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040564_5 1177528-1177637 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040564_6 3209636-3209724 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP040564_6 6.1|3209659|43|NZ_CP040564|CRISPRCasFinder 3209659-3209701 43 MW013502 Salmonella virus L cI-40 13-am43, complete genome 31682-31724 0 1.0
NZ_CP040564_6 6.1|3209659|43|NZ_CP040564|CRISPRCasFinder 3209659-3209701 43 NC_004348 Enterobacteria phage ST64T, complete genome 14884-14926 0 1.0
NZ_CP040564_6 6.1|3209659|43|NZ_CP040564|CRISPRCasFinder 3209659-3209701 43 MW013503 Salmonella virus L cII-101, complete genome 31683-31725 0 1.0
NZ_CP040564_6 6.1|3209659|43|NZ_CP040564|CRISPRCasFinder 3209659-3209701 43 AY052766 Salmonella typhimurium bacteriophage ST64T, complete genome 14884-14926 0 1.0
NZ_CP040564_6 6.1|3209659|43|NZ_CP040564|CRISPRCasFinder 3209659-3209701 43 MF188997 Salmonella phage vB_SalP_PM43, complete genome 14779-14821 0 1.0
NZ_CP040564_2 2.22|968691|32|NZ_CP040564|CRISPRCasFinder,CRT 968691-968722 32 NZ_CP034699 Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence 177960-177991 1 0.969
NZ_CP040564_2 2.22|968691|32|NZ_CP040564|CRISPRCasFinder,CRT 968691-968722 32 NZ_CP034710 Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence 67131-67162 1 0.969
NZ_CP040564_2 2.33|968694|32|NZ_CP040564|PILER-CR 968694-968725 32 NZ_CP034699 Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence 177960-177991 1 0.969
NZ_CP040564_2 2.33|968694|32|NZ_CP040564|PILER-CR 968694-968725 32 NZ_CP034710 Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence 67131-67162 1 0.969
NZ_CP040564_3 3.12|985828|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT 985828-985859 32 CP051275 Salmonella phage SW-37, complete genome 24295-24326 1 0.969
NZ_CP040564_3 3.12|985828|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT 985828-985859 32 KC139516 Salmonella phage FSL SP-016, partial genome 43971-44002 1 0.969
NZ_CP040564_2 2.16|968324|32|NZ_CP040564|CRISPRCasFinder,CRT 968324-968355 32 NZ_CP030204 Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence 130783-130814 2 0.938
NZ_CP040564_6 6.1|3209659|43|NZ_CP040564|CRISPRCasFinder 3209659-3209701 43 CP051272 Salmonella phage SW-70, complete genome 35821-35863 2 0.953
NZ_CP040564_6 6.1|3209659|43|NZ_CP040564|CRISPRCasFinder 3209659-3209701 43 NC_011802 Salmonella enterica bacteriophage SE1, complete genome 15044-15086 2 0.953
NZ_CP040564_6 6.1|3209659|43|NZ_CP040564|CRISPRCasFinder 3209659-3209701 43 CP051278 Salmonella phage ST-87, complete genome 25853-25895 2 0.953
NZ_CP040564_6 6.1|3209659|43|NZ_CP040564|CRISPRCasFinder 3209659-3209701 43 CP051288 Salmonella phage ST-29, complete genome 38695-38737 2 0.953
NZ_CP040564_6 6.1|3209659|43|NZ_CP040564|CRISPRCasFinder 3209659-3209701 43 CP051285 Salmonella phage ST-32, complete genome 31789-31831 2 0.953
NZ_CP040564_6 6.1|3209659|43|NZ_CP040564|CRISPRCasFinder 3209659-3209701 43 NC_014900 Salmonella phage ST160, complete genome 15112-15154 2 0.953
NZ_CP040564_3 3.12|985828|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT 985828-985859 32 JQ182729 Enterobacterial phage mEp390, complete genome 23951-23982 3 0.906
NZ_CP040564_2 2.27|968324|35|NZ_CP040564|PILER-CR 968324-968358 35 NZ_CP030204 Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence 130780-130814 4 0.886
NZ_CP040564_2 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968202-968233 32 NC_019849 Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence 850282-850313 6 0.812
NZ_CP040564_2 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968202-968233 32 NC_003078 Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence 887728-887759 6 0.812
NZ_CP040564_2 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968202-968233 32 NZ_CP019586 Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence 856045-856076 6 0.812
NZ_CP040564_2 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968202-968233 32 NC_017326 Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence 835457-835488 6 0.812
NZ_CP040564_2 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968202-968233 32 NZ_CP021799 Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence 953948-953979 6 0.812
NZ_CP040564_2 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968202-968233 32 NC_017323 Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence 431895-431926 6 0.812
NZ_CP040564_2 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968202-968233 32 NZ_CP009146 Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence 843687-843718 6 0.812
NZ_CP040564_2 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968202-968233 32 NC_018701 Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence 833486-833517 6 0.812
NZ_CP040564_2 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968202-968233 32 NZ_CP021828 Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence 457962-457993 6 0.812
NZ_CP040564_2 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968202-968233 32 NZ_CP021802 Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence 1502459-1502490 6 0.812
NZ_CP040564_2 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968202-968233 32 NZ_CP021820 Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence 1188725-1188756 6 0.812
NZ_CP040564_2 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968202-968233 32 NZ_CP021831 Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence 1094940-1094971 6 0.812
NZ_CP040564_2 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968202-968233 32 NZ_CP021823 Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence 574071-574102 6 0.812
NZ_CP040564_2 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968202-968233 32 NZ_CP021814 Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence 758103-758134 6 0.812
NZ_CP040564_2 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968202-968233 32 NZ_CP021795 Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence 92938-92969 6 0.812
NZ_CP040564_2 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968202-968233 32 NZ_CP021810 Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence 1622461-1622492 6 0.812
NZ_CP040564_2 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968202-968233 32 NZ_CP021806 Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence 174090-174121 6 0.812
NZ_CP040564_2 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968202-968233 32 NZ_CP021218 Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence 996227-996258 6 0.812
NZ_CP040564_2 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968202-968233 32 NZ_CP026527 Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence 856529-856560 6 0.812
NZ_CP040564_2 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968202-968233 32 NZ_CP019484 Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence 1026857-1026888 6 0.812
NZ_CP040564_2 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968202-968233 32 NZ_CP019487 Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence 801217-801248 6 0.812
NZ_CP040564_2 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968202-968233 32 NC_020560 Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence 887731-887762 6 0.812
NZ_CP040564_3 3.10|985706|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT 985706-985737 32 MT774487 Salmonella phage MG40, complete genome 21746-21777 6 0.812
NZ_CP040564_2 2.6|967714|32|NZ_CP040564|CRISPRCasFinder,CRT 967714-967745 32 NC_011366 Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence 208454-208485 7 0.781
NZ_CP040564_2 2.6|967714|32|NZ_CP040564|CRISPRCasFinder,CRT 967714-967745 32 NC_017958 Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence 449563-449594 7 0.781
NZ_CP040564_2 2.6|967714|32|NZ_CP040564|CRISPRCasFinder,CRT 967714-967745 32 NZ_CP035001 Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence 167100-167131 7 0.781
NZ_CP040564_2 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968202-968233 32 NZ_CP030829 Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence 360377-360408 7 0.781
NZ_CP040564_3 3.6|985462|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT 985462-985493 32 NZ_CP024773 Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence 29048-29079 7 0.781
NZ_CP040564_3 3.6|985462|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT 985462-985493 32 NZ_CP041075 Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence 142294-142325 7 0.781
NZ_CP040564_3 3.8|985584|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT 985584-985615 32 NZ_CP054841 Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence 535406-535437 7 0.781
NZ_CP040564_3 3.10|985706|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT 985706-985737 32 JQ288021 Salmonella phage SPN3UB, complete genome 39452-39483 7 0.781
NZ_CP040564_3 3.10|985706|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT 985706-985737 32 MH370364 Salmonella phage S107, complete genome 29959-29990 7 0.781
NZ_CP040564_3 3.10|985706|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT 985706-985737 32 MH370382 Salmonella phage S135, complete genome 29959-29990 7 0.781
NZ_CP040564_3 3.10|985706|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT 985706-985737 32 MH370383 Salmonella phage S137, complete genome 29959-29990 7 0.781
NZ_CP040564_4 4.1|986054|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT 986054-986085 32 NZ_CP013929 Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence 188177-188208 7 0.781
NZ_CP040564_4 4.1|986054|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT 986054-986085 32 CP013931 Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence 192938-192969 7 0.781
NZ_CP040564_4 4.1|986054|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT 986054-986085 32 NC_019394 Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence 188204-188235 7 0.781
NZ_CP040564_2 2.9|967897|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 967897-967928 32 CP001770 Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence 145771-145802 8 0.75
NZ_CP040564_2 2.10|967958|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 967958-967989 32 LQ277707 Sequence 2 from Patent WO2016071503 12422-12453 8 0.75
NZ_CP040564_2 2.10|967958|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 967958-967989 32 LZ998055 JP 2017534684-A/2: Phage Therapy 12422-12453 8 0.75
NZ_CP040564_2 2.13|968141|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968141-968172 32 NZ_CP028348 Novosphingobium sp. THN1 plasmid pTHN, complete sequence 1098771-1098802 8 0.75
NZ_CP040564_2 2.13|968141|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968141-968172 32 NZ_CP014128 Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence 160189-160220 8 0.75
NZ_CP040564_2 2.13|968141|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968141-968172 32 NC_014561 Pantoea vagans C9-1 plasmid pPag1, complete sequence 156443-156474 8 0.75
NZ_CP040564_2 2.13|968141|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968141-968172 32 NC_010553 Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence 137983-138014 8 0.75
NZ_CP040564_2 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968202-968233 32 NC_012811 Methylorubrum extorquens AM1 megaplasmid, complete sequence 43093-43124 8 0.75
NZ_CP040564_2 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968202-968233 32 NZ_CP053442 Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence 152052-152083 8 0.75
NZ_CP040564_2 2.19|968508|32|NZ_CP040564|CRISPRCasFinder,CRT 968508-968539 32 CP024685 Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence 135469-135500 8 0.75
NZ_CP040564_2 2.19|968508|32|NZ_CP040564|CRISPRCasFinder,CRT 968508-968539 32 NZ_CP031801 Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence 11654-11685 8 0.75
NZ_CP040564_2 2.30|968511|32|NZ_CP040564|PILER-CR 968511-968542 32 CP024685 Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence 135469-135500 8 0.75
NZ_CP040564_2 2.30|968511|32|NZ_CP040564|PILER-CR 968511-968542 32 NZ_CP031801 Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence 11654-11685 8 0.75
NZ_CP040564_3 3.7|985523|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT 985523-985554 32 NZ_CP016179 Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence 203354-203385 8 0.75
NZ_CP040564_4 4.2|986115|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT 986115-986146 32 NZ_CP016489 Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence 8862-8893 8 0.75
NZ_CP040564_4 4.2|986115|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT 986115-986146 32 NZ_CP016476 Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence 151600-151631 8 0.75
NZ_CP040564_4 4.8|986481|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT 986481-986512 32 MN855803 Bacteriophage sp. isolate 108, partial genome 10057-10088 8 0.75
NZ_CP040564_2 2.5|967653|32|NZ_CP040564|CRISPRCasFinder,CRT 967653-967684 32 MN693046 Marine virus AFVG_25M413, complete genome 4323-4354 9 0.719
NZ_CP040564_2 2.5|967653|32|NZ_CP040564|CRISPRCasFinder,CRT 967653-967684 32 MN693008 Marine virus AFVG_117M9, complete genome 4316-4347 9 0.719
NZ_CP040564_2 2.6|967714|32|NZ_CP040564|CRISPRCasFinder,CRT 967714-967745 32 DQ674738 Aeromonas phage phiO18P, complete genome 15707-15738 9 0.719
NZ_CP040564_2 2.6|967714|32|NZ_CP040564|CRISPRCasFinder,CRT 967714-967745 32 NZ_CP031166 Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence 380725-380756 9 0.719
NZ_CP040564_2 2.6|967714|32|NZ_CP040564|CRISPRCasFinder,CRT 967714-967745 32 NZ_CP022367 Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence 153785-153816 9 0.719
NZ_CP040564_2 2.7|967775|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 967775-967806 32 MN694645 Marine virus AFVG_250M761, complete genome 31050-31081 9 0.719
NZ_CP040564_2 2.8|967836|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 967836-967867 32 MN062720 Microbacterium phage FuzzBuster, complete genome 19374-19405 9 0.719
NZ_CP040564_2 2.13|968141|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968141-968172 32 NZ_CP045722 Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence 332-363 9 0.719
NZ_CP040564_2 2.13|968141|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968141-968172 32 NZ_CP022519 Pantoea vagans strain FBS135 plasmid pPant3, complete sequence 62976-63007 9 0.719
NZ_CP040564_2 2.13|968141|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 968141-968172 32 NZ_CP028351 Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence 144976-145007 9 0.719
NZ_CP040564_3 3.4|985340|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT 985340-985371 32 MT162468 Synechococcus phage S-H25, complete genome 69929-69960 9 0.719
NZ_CP040564_3 3.10|985706|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT 985706-985737 32 MK448228 Klebsiella phage ST15-VIM1phi2.1, complete genome 32866-32897 9 0.719
NZ_CP040564_2 2.3|967531|32|NZ_CP040564|CRISPRCasFinder,CRT 967531-967562 32 NZ_CP030264 Ensifer adhaerens strain Corn53 plasmid AB, complete sequence 1134787-1134818 10 0.688
NZ_CP040564_2 2.8|967836|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 967836-967867 32 NZ_CP019257 Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence 20006-20037 10 0.688
NZ_CP040564_2 2.8|967836|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 967836-967867 32 NZ_CP019274 Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence 9024-9055 10 0.688
NZ_CP040564_2 2.8|967836|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 967836-967867 32 NZ_CP019275 Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence 27130-27161 10 0.688
NZ_CP040564_2 2.8|967836|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 967836-967867 32 NZ_CP019279 Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence 19363-19394 10 0.688
NZ_CP040564_2 2.8|967836|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 967836-967867 32 NZ_CP019246 Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence 23427-23458 10 0.688
NZ_CP040564_2 2.8|967836|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 967836-967867 32 NC_049342 Escherichia phage 500465-1, complete genome 24342-24373 10 0.688
NZ_CP040564_2 2.8|967836|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 967836-967867 32 KY271398 Klebsiella phage 4 LV-2017, complete genome 28240-28271 10 0.688
NZ_CP040564_2 2.8|967836|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR 967836-967867 32 CP025900 Escherichia phage sp., complete genome 24342-24373 10 0.688
NZ_CP040564_2 2.23|968752|32|NZ_CP040564|CRISPRCasFinder,CRT 968752-968783 32 NZ_CP044072 Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence 99817-99848 10 0.688
NZ_CP040564_2 2.26|968935|32|NZ_CP040564|CRISPRCasFinder,CRT 968935-968966 32 NZ_CP054615 Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence 146919-146950 10 0.688
NZ_CP040564_2 2.34|968755|32|NZ_CP040564|PILER-CR 968755-968786 32 NZ_CP044072 Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence 99817-99848 10 0.688
NZ_CP040564_3 3.4|985340|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT 985340-985371 32 LN681539 Clostridium phage phiCD505, complete genome 8933-8964 10 0.688
NZ_CP040564_3 3.4|985340|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT 985340-985371 32 JX145341 Clostridium phage phiMMP02, complete genome 8932-8963 10 0.688
NZ_CP040564_3 3.4|985340|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT 985340-985371 32 NC_011398 Clostridium phage phiCD27, complete genome 8924-8955 10 0.688
NZ_CP040564_3 3.4|985340|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT 985340-985371 32 NC_048642 Clostridium phage CDKM9, complete genome 8871-8902 10 0.688
NZ_CP040564_3 3.4|985340|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT 985340-985371 32 KX228400 Clostridium phage CDKM15, complete genome 9066-9097 10 0.688
NZ_CP040564_3 3.12|985828|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT 985828-985859 32 NZ_AP022571 Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence 153476-153507 10 0.688
NZ_CP040564_4 4.9|986542|32|NZ_CP040564|CRISPRCasFinder,CRT 986542-986573 32 NC_016113 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence 1151729-1151760 10 0.688
NZ_CP040564_4 4.9|986542|32|NZ_CP040564|CRISPRCasFinder,CRT 986542-986573 32 NC_017585 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence 661429-661460 10 0.688
NZ_CP040564_2 2.1|967409|32|NZ_CP040564|CRISPRCasFinder,CRT 967409-967440 32 NC_012586 Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence 1885546-1885577 11 0.656
NZ_CP040564_2 2.1|967409|32|NZ_CP040564|CRISPRCasFinder,CRT 967409-967440 32 NZ_HG938356 Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence 56201-56232 11 0.656
NZ_CP040564_2 2.1|967409|32|NZ_CP040564|CRISPRCasFinder,CRT 967409-967440 32 NZ_CP040822 Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence 83399-83430 11 0.656
NZ_CP040564_2 2.1|967409|32|NZ_CP040564|CRISPRCasFinder,CRT 967409-967440 32 NZ_CP023071 Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence 1487158-1487189 11 0.656
NZ_CP040564_2 2.1|967409|32|NZ_CP040564|CRISPRCasFinder,CRT 967409-967440 32 NZ_CP029232 Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence 597699-597730 11 0.656
NZ_CP040564_2 2.6|967714|32|NZ_CP040564|CRISPRCasFinder,CRT 967714-967745 32 NZ_CP054036 Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence 234768-234799 11 0.656
NZ_CP040564_2 2.6|967714|32|NZ_CP040564|CRISPRCasFinder,CRT 967714-967745 32 NZ_CP022568 Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence 299431-299462 11 0.656

1. spacer 6.1|3209659|43|NZ_CP040564|CRISPRCasFinder matches to MW013502 (Salmonella virus L cI-40 13-am43, complete genome) position: , mismatch: 0, identity: 1.0 

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	Protospacer
*******************************************

2. spacer 6.1|3209659|43|NZ_CP040564|CRISPRCasFinder matches to NC_004348 (Enterobacteria phage ST64T, complete genome) position: , mismatch: 0, identity: 1.0 

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	Protospacer
*******************************************

3. spacer 6.1|3209659|43|NZ_CP040564|CRISPRCasFinder matches to MW013503 (Salmonella virus L cII-101, complete genome) position: , mismatch: 0, identity: 1.0 

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	Protospacer
*******************************************

4. spacer 6.1|3209659|43|NZ_CP040564|CRISPRCasFinder matches to AY052766 (Salmonella typhimurium bacteriophage ST64T, complete genome) position: , mismatch: 0, identity: 1.0 

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	Protospacer
*******************************************

5. spacer 6.1|3209659|43|NZ_CP040564|CRISPRCasFinder matches to MF188997 (Salmonella phage vB_SalP_PM43, complete genome) position: , mismatch: 0, identity: 1.0 

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	Protospacer
*******************************************

6. spacer 2.22|968691|32|NZ_CP040564|CRISPRCasFinder,CRT matches to NZ_CP034699 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence) position: , mismatch: 1, identity: 0.969 

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

7. spacer 2.22|968691|32|NZ_CP040564|CRISPRCasFinder,CRT matches to NZ_CP034710 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence) position: , mismatch: 1, identity: 0.969 

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

8. spacer 2.33|968694|32|NZ_CP040564|PILER-CR matches to NZ_CP034699 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence) position: , mismatch: 1, identity: 0.969 

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

9. spacer 2.33|968694|32|NZ_CP040564|PILER-CR matches to NZ_CP034710 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence) position: , mismatch: 1, identity: 0.969 

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

10. spacer 3.12|985828|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 1, identity: 0.969 

ccacgttcggcgatgttggccccatcggtcca	CRISPR spacer
ccacgttcggcgatgttggccccatcggtccg	Protospacer
*******************************.

11. spacer 3.12|985828|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT matches to KC139516 (Salmonella phage FSL SP-016, partial genome) position: , mismatch: 1, identity: 0.969 

ccacgttcggcgatgttggccccatcggtcca	CRISPR spacer
ccacattcggcgatgttggccccatcggtcca	Protospacer
****.***************************

12. spacer 2.16|968324|32|NZ_CP040564|CRISPRCasFinder,CRT matches to NZ_CP030204 (Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence) position: , mismatch: 2, identity: 0.938 

aaacgaaagaggctatgcggttgtttatcggt	CRISPR spacer
aaacgaaagaggccatgcgattgtttatcggt	Protospacer
*************.*****.************

13. spacer 6.1|3209659|43|NZ_CP040564|CRISPRCasFinder matches to CP051272 (Salmonella phage SW-70, complete genome) position: , mismatch: 2, identity: 0.953 

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacattcgctgtgatccgcgtcattactggtgtt	Protospacer
***************.******* *******************

14. spacer 6.1|3209659|43|NZ_CP040564|CRISPRCasFinder matches to NC_011802 (Salmonella enterica bacteriophage SE1, complete genome) position: , mismatch: 2, identity: 0.953 

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacattcgctgtgatccgcgtcattactggtgtt	Protospacer
***************.******* *******************

15. spacer 6.1|3209659|43|NZ_CP040564|CRISPRCasFinder matches to CP051278 (Salmonella phage ST-87, complete genome) position: , mismatch: 2, identity: 0.953 

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacattcgctgtgatccgcgtcattactggtgtt	Protospacer
***************.******* *******************

16. spacer 6.1|3209659|43|NZ_CP040564|CRISPRCasFinder matches to CP051288 (Salmonella phage ST-29, complete genome) position: , mismatch: 2, identity: 0.953 

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacattcgctgtgatccgcgtcattactggtgtt	Protospacer
***************.******* *******************

17. spacer 6.1|3209659|43|NZ_CP040564|CRISPRCasFinder matches to CP051285 (Salmonella phage ST-32, complete genome) position: , mismatch: 2, identity: 0.953 

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacattcgctgtgatccgcgtcattactggtgtt	Protospacer
***************.******* *******************

18. spacer 6.1|3209659|43|NZ_CP040564|CRISPRCasFinder matches to NC_014900 (Salmonella phage ST160, complete genome) position: , mismatch: 2, identity: 0.953 

ccgttggacaacatttgctgtgagccgcgtcattactggtgtt	CRISPR spacer
ccgttggacaacattcgctgtgatccgcgtcattactggtgtt	Protospacer
***************.******* *******************

19. spacer 3.12|985828|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT matches to JQ182729 (Enterobacterial phage mEp390, complete genome) position: , mismatch: 3, identity: 0.906 

ccacgttcggcgatgttggccccatcggtcca	CRISPR spacer
ctacgttcggtgatgttggccccataggtcca	Protospacer
*.********.************** ******

20. spacer 2.27|968324|35|NZ_CP040564|PILER-CR matches to NZ_CP030204 (Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence) position: , mismatch: 4, identity: 0.886 

tcgaaacgaaagaggctatgcggttgtttatcggt	CRISPR spacer
atgaaacgaaagaggccatgcgattgtttatcggt	Protospacer
 .**************.*****.************

21. spacer 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 6, identity: 0.812 

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

22. spacer 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812 

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

23. spacer 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812 

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

24. spacer 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 6, identity: 0.812 

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

25. spacer 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812 

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

26. spacer 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 6, identity: 0.812 

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

27. spacer 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812 

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

28. spacer 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 6, identity: 0.812 

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

29. spacer 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812 

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

30. spacer 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812 

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

31. spacer 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812 

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

32. spacer 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812 

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

33. spacer 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812 

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

34. spacer 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812 

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

35. spacer 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812 

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

36. spacer 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812 

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

37. spacer 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812 

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

38. spacer 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812 

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

39. spacer 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812 

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

40. spacer 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812 

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

41. spacer 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 6, identity: 0.812 

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

42. spacer 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812 

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

43. spacer 3.10|985706|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT matches to MT774487 (Salmonella phage MG40, complete genome) position: , mismatch: 6, identity: 0.812 

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgg	Protospacer
 .  **********************  ****

44. spacer 2.6|967714|32|NZ_CP040564|CRISPRCasFinder,CRT matches to NC_011366 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence) position: , mismatch: 7, identity: 0.781 

ccggcatcagcgccgatccgttcatagtgccc---	CRISPR spacer
tcggcaccagcgccgatccggtca---tgctcgaa	Protospacer
.*****.************* ***   ***.*

45. spacer 2.6|967714|32|NZ_CP040564|CRISPRCasFinder,CRT matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 7, identity: 0.781 

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatcaccgccgatcctttcaccgccgcc	Protospacer
********* ********* ****. *.  **

46. spacer 2.6|967714|32|NZ_CP040564|CRISPRCasFinder,CRT matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 7, identity: 0.781 

ccggcatcagcgccgatccgttcatagtgccc---	CRISPR spacer
tcggcaccagcgccgatccggtca---tgctcgaa	Protospacer
.*****.************* ***   ***.*

47. spacer 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030829 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence) position: , mismatch: 7, identity: 0.781 

ttgacggtgacgtcagtgccgaaggcgaaata	CRISPR spacer
tcttcggtgacgacattgccgaaggcgacgta	Protospacer
*.  ******** ** ************ .**

48. spacer 3.6|985462|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024773 (Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence) position: , mismatch: 7, identity: 0.781 

ttacgtgtttattcatctgttgcattagattc	CRISPR spacer
attggtgtttcttcatctattgcattagaagc	Protospacer
 *  ****** *******.**********  *

49. spacer 3.6|985462|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041075 (Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781 

ttacgtgtttattcatctgttgcattagattc	CRISPR spacer
attggtgtttcttcatctattgcattagaagc	Protospacer
 *  ****** *******.**********  *

50. spacer 3.8|985584|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781 

acgccccgaatgtgtttgcctcgcccgctgcc	CRISPR spacer
gcgacctgaatgtgtttgcctcgcgccgtggc	Protospacer
.** **.***************** *  ** *

51. spacer 3.10|985706|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT matches to JQ288021 (Salmonella phage SPN3UB, complete genome) position: , mismatch: 7, identity: 0.781 

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgc	Protospacer
 .  **********************  ***

52. spacer 3.10|985706|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT matches to MH370364 (Salmonella phage S107, complete genome) position: , mismatch: 7, identity: 0.781 

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgc	Protospacer
 .  **********************  ***

53. spacer 3.10|985706|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT matches to MH370382 (Salmonella phage S135, complete genome) position: , mismatch: 7, identity: 0.781 

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgc	Protospacer
 .  **********************  ***

54. spacer 3.10|985706|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT matches to MH370383 (Salmonella phage S137, complete genome) position: , mismatch: 7, identity: 0.781 

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
ccatttcatcaggcactaccggcactggctgc	Protospacer
 .  **********************  ***

55. spacer 4.1|986054|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013929 (Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence) position: , mismatch: 7, identity: 0.781 

agccgtttccgctaaatacccc--cgcagtgatt	CRISPR spacer
ccccgatttcgctaaatacccccgcgcagcga--	Protospacer
  *** **.*************  *****.**

56. spacer 4.1|986054|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT matches to CP013931 (Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence) position: , mismatch: 7, identity: 0.781 

agccgtttccgctaaatacccc--cgcagtgatt	CRISPR spacer
ccccgatttcgctaaatacccccgcgcagcga--	Protospacer
  *** **.*************  *****.**

57. spacer 4.1|986054|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT matches to NC_019394 (Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence) position: , mismatch: 7, identity: 0.781 

agccgtttccgctaaatacccc--cgcagtgatt	CRISPR spacer
ccccgatttcgctaaatacccccgcgcagcga--	Protospacer
  *** **.*************  *****.**

58. spacer 2.9|967897|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to CP001770 (Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence) position: , mismatch: 8, identity: 0.75 

cggaggatggaatatttccgaggctggcgatt	CRISPR spacer
tgggagatggaatacttccggggctggcaacc	Protospacer
.**..*********.*****.*******.*..

59. spacer 2.10|967958|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to LQ277707 (Sequence 2 from Patent WO2016071503) position: , mismatch: 8, identity: 0.75 

atgccggaacgctgatggcgtttgacatgagc----	CRISPR spacer
ttgccggaacgctattggcgtttg----cagccttt	Protospacer
 ************. *********     ***

60. spacer 2.10|967958|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to LZ998055 (JP 2017534684-A/2: Phage Therapy) position: , mismatch: 8, identity: 0.75 

atgccggaacgctgatggcgtttgacatgagc----	CRISPR spacer
ttgccggaacgctattggcgtttg----cagccttt	Protospacer
 ************. *********     ***

61. spacer 2.13|968141|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 8, identity: 0.75 

tgacgctggtctataccggcaacgaacgcgac-	CRISPR spacer
atacgctggtctataccggcaa-ggatccgctg	Protospacer
  ******************** *.*. ** .

62. spacer 2.13|968141|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014128 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75 

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacactggtctacaccggcaacgtaaaattc	Protospacer
****.********.********** * .   *

63. spacer 2.13|968141|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NC_014561 (Pantoea vagans C9-1 plasmid pPag1, complete sequence) position: , mismatch: 8, identity: 0.75 

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacactggtctacaccggcaacgtaaaattc	Protospacer
****.********.********** * .   *

64. spacer 2.13|968141|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 8, identity: 0.75 

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
ggacgctgttcaataccggcaacgtccggatc	Protospacer
 ******* ** ************  ** . *

65. spacer 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75 

ttgacggtgacgtcagtgccgaaggcgaaata	CRISPR spacer
tcgacggtgacgtccgtgacgaaggtgttcga	Protospacer
*.************ *** ******.*    *

66. spacer 2.14|968202|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053442 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence) position: , mismatch: 8, identity: 0.75 

ttgacggtgacgtcagtgccgaaggcgaaata	CRISPR spacer
ttctggtggacgtccgtgccgaaggcgcaatg	Protospacer
**   *  ****** ************ ***.

67. spacer 2.19|968508|32|NZ_CP040564|CRISPRCasFinder,CRT matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 8, identity: 0.75 

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
attcactatcagacattttattcagttctgcc	Protospacer
  ***** ** *****************  .

68. spacer 2.19|968508|32|NZ_CP040564|CRISPRCasFinder,CRT matches to NZ_CP031801 (Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75 

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
cgcgcgtgtctgacattgtattcagttcattt	Protospacer
**.   * ********* **********.**

69. spacer 2.30|968511|32|NZ_CP040564|PILER-CR matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 8, identity: 0.75 

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
attcactatcagacattttattcagttctgcc	Protospacer
  ***** ** *****************  .

70. spacer 2.30|968511|32|NZ_CP040564|PILER-CR matches to NZ_CP031801 (Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75 

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
cgcgcgtgtctgacattgtattcagttcattt	Protospacer
**.   * ********* **********.**

71. spacer 3.7|985523|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016179 (Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75 

gaggcgtac-----aggctgttagatgagaaattacc	CRISPR spacer
-----atactaataaggctgtttgatgcgaaattacc	Protospacer
     .***     ******** **** *********

72. spacer 4.2|986115|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.75 

ttcttgaatatgattgcgggtatatgtggata	CRISPR spacer
ctcttgaatatgattgcgggtttagatttacc	Protospacer
.******************** ** .*  *.

73. spacer 4.2|986115|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016476 (Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75 

ttcttgaatatgattgcgggtatatgtggata	CRISPR spacer
ctcttgaatatgattgcgggtttagatttacc	Protospacer
.******************** ** .*  *.

74. spacer 4.8|986481|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 8, identity: 0.75 

ggttaaccaggggtttttccccactatttcgc	CRISPR spacer
aggtaacgaggggtttttccccaatattgaaa	Protospacer
.* **** *************** ****  .

75. spacer 2.5|967653|32|NZ_CP040564|CRISPRCasFinder,CRT matches to MN693046 (Marine virus AFVG_25M413, complete genome) position: , mismatch: 9, identity: 0.719 

gcgaggtcaataaaaaatggtgtggctttacc	CRISPR spacer
ttagggtcaacaaaaaatggtgtggtttcaga	Protospacer
 ...******.**************.**.*

76. spacer 2.5|967653|32|NZ_CP040564|CRISPRCasFinder,CRT matches to MN693008 (Marine virus AFVG_117M9, complete genome) position: , mismatch: 9, identity: 0.719 

gcgaggtcaataaaaaatggtgtggctttacc	CRISPR spacer
ttagggtcaacaaaaaatggtgtggtttcaga	Protospacer
 ...******.**************.**.*

77. spacer 2.6|967714|32|NZ_CP040564|CRISPRCasFinder,CRT matches to DQ674738 (Aeromonas phage phiO18P, complete genome) position: , mismatch: 9, identity: 0.719 

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatcagcgccgagcagttcagcaaactg	Protospacer
**************** * *****  . .*.

78. spacer 2.6|967714|32|NZ_CP040564|CRISPRCasFinder,CRT matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 9, identity: 0.719 

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
gcggcatcagcgccgaccggttcaccgtcagg	Protospacer
 ***************.* *****. **

79. spacer 2.6|967714|32|NZ_CP040564|CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.719 

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatgagcgccgatcagttcgacgccctg	Protospacer
******* ********** ****.  *. *.

80. spacer 2.7|967775|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to MN694645 (Marine virus AFVG_250M761, complete genome) position: , mismatch: 9, identity: 0.719 

aacaggaacaggaaaaaaaagatttgtccggt	CRISPR spacer
tacagtaacaggaaaaaaaggattaatgatgc	Protospacer
 **** *************.**** .*   *.

81. spacer 2.8|967836|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to MN062720 (Microbacterium phage FuzzBuster, complete genome) position: , mismatch: 9, identity: 0.719 

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaacggtcagcctgtccaggagga	Protospacer
****** *********** ****..**

82. spacer 2.13|968141|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045722 (Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719 

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacgctgatctataccggcaacgtcaagttt	Protospacer
********.***************   .   .

83. spacer 2.13|968141|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022519 (Pantoea vagans strain FBS135 plasmid pPant3, complete sequence) position: , mismatch: 9, identity: 0.719 

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacgctgatctataccggcaacgtcaagttt	Protospacer
********.***************   .   .

84. spacer 2.13|968141|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028351 (Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence) position: , mismatch: 9, identity: 0.719 

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacactggtctacaccggcaacgtaaaattt	Protospacer
****.********.********** * .   .

85. spacer 3.4|985340|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT matches to MT162468 (Synechococcus phage S-H25, complete genome) position: , mismatch: 9, identity: 0.719 

ttgcag----ggcgatattgttgttggtgaatggga	CRISPR spacer
----aacactgacgatattattgttggtgattgggg	Protospacer
    *.    *.*******.********** ****.

86. spacer 3.10|985706|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT matches to MK448228 (Klebsiella phage ST15-VIM1phi2.1, complete genome) position: , mismatch: 9, identity: 0.719 

gtcgttcatcaggcactaccggcactttctgg	CRISPR spacer
tgagttcatccggcactaccggcgctggatgc	Protospacer
   ******* ************.**   **

87. spacer 2.3|967531|32|NZ_CP040564|CRISPRCasFinder,CRT matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 10, identity: 0.688 

ctccagcgctcgaatttatttgaggccaccac	CRISPR spacer
gaacaccgcgcgaatttatttgaggcaagttt	Protospacer
   ** *** **************** * . .

88. spacer 2.8|967836|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019257 (Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence) position: , mismatch: 10, identity: 0.688 

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

89. spacer 2.8|967836|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019274 (Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence) position: , mismatch: 10, identity: 0.688 

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

90. spacer 2.8|967836|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019275 (Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence) position: , mismatch: 10, identity: 0.688 

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

91. spacer 2.8|967836|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019279 (Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence) position: , mismatch: 10, identity: 0.688 

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

92. spacer 2.8|967836|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 10, identity: 0.688 

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

93. spacer 2.8|967836|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to NC_049342 (Escherichia phage 500465-1, complete genome) position: , mismatch: 10, identity: 0.688 

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

94. spacer 2.8|967836|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to KY271398 (Klebsiella phage 4 LV-2017, complete genome) position: , mismatch: 10, identity: 0.688 

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

95. spacer 2.8|967836|32|NZ_CP040564|CRISPRCasFinder,CRT,PILER-CR matches to CP025900 (Escherichia phage sp., complete genome) position: , mismatch: 10, identity: 0.688 

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

96. spacer 2.23|968752|32|NZ_CP040564|CRISPRCasFinder,CRT matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688 

ttgatcgagagtgcgaagaggcagaacgggca	CRISPR spacer
gaaggtggcagtgccaagagacagaacgggca	Protospacer
  .. .*. ***** *****.***********

97. spacer 2.26|968935|32|NZ_CP040564|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688 

cgttcatcggcagcgtcacgcaatatgaagat	CRISPR spacer
acatcatcggcatcgtcacgccatatccggca	Protospacer
   ********* ******** ****  .*

98. spacer 2.34|968755|32|NZ_CP040564|PILER-CR matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688 

ttgatcgagagtgcgaagaggcagaacgggca	CRISPR spacer
gaaggtggcagtgccaagagacagaacgggca	Protospacer
  .. .*. ***** *****.***********

99. spacer 3.4|985340|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 10, identity: 0.688 

ttgcagggcgatattgttgttggtgaatggga	CRISPR spacer
agtgaaaatgatattgttgttgaggaatggga	Protospacer
    *....*************. ********

100. spacer 3.4|985340|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 10, identity: 0.688 

ttgcagggcgatattgttgttggtgaatggga	CRISPR spacer
agtgaaaatgatattgttgttgaggaatggga	Protospacer
    *....*************. ********

101. spacer 3.4|985340|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 10, identity: 0.688 

ttgcagggcgatattgttgttggtgaatggga	CRISPR spacer
agtgaaaatgatattgttgttgaggaatggga	Protospacer
    *....*************. ********

102. spacer 3.4|985340|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 10, identity: 0.688 

ttgcagggcgatattgttgttggtgaatggga	CRISPR spacer
agtgaaaatgatattgttgttgaggaatggga	Protospacer
    *....*************. ********

103. spacer 3.4|985340|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 10, identity: 0.688 

ttgcagggcgatattgttgttggtgaatggga	CRISPR spacer
agtgaaaatgatattgttgttgaggaatggga	Protospacer
    *....*************. ********

104. spacer 3.12|985828|32|NZ_CP040564|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022571 (Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence) position: , mismatch: 10, identity: 0.688 

ccacgttcggcgatgttggccccatcggtcca	CRISPR spacer
actcgttcggcgatgtggcccccatccaggtg	Protospacer
 * ************* * ******* .  ..

105. spacer 4.9|986542|32|NZ_CP040564|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688 

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

106. spacer 4.9|986542|32|NZ_CP040564|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688 

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

107. spacer 2.1|967409|32|NZ_CP040564|CRISPRCasFinder,CRT matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 11, identity: 0.656 

tttgccgatccccttccagaccaccctttaca	CRISPR spacer
cgacgagatcgccttccagaccaaccttttgg	Protospacer
.     **** ************ *****  .

108. spacer 2.1|967409|32|NZ_CP040564|CRISPRCasFinder,CRT matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 11, identity: 0.656 

tttgccgatccccttccagaccaccctttaca	CRISPR spacer
cgacgagatcgccttccagaccaaccttttgg	Protospacer
.     **** ************ *****  .

109. spacer 2.1|967409|32|NZ_CP040564|CRISPRCasFinder,CRT matches to NZ_CP040822 (Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence) position: , mismatch: 11, identity: 0.656 

tttgccgatccccttccagaccaccctttaca	CRISPR spacer
cgactcgatcgccttccagaccaaccttctgg	Protospacer
.   .***** ************ ****.  .

110. spacer 2.1|967409|32|NZ_CP040564|CRISPRCasFinder,CRT matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 11, identity: 0.656 

tttgccgatccccttccagaccaccctttaca	CRISPR spacer
cgacgagatcgccttccagaccaaccttttgg	Protospacer
.     **** ************ *****  .

111. spacer 2.1|967409|32|NZ_CP040564|CRISPRCasFinder,CRT matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 11, identity: 0.656 

tttgccgatccccttccagaccaccctttaca	CRISPR spacer
cgacgagatcgccttccagaccaaccttttgg	Protospacer
.     **** ************ *****  .

112. spacer 2.6|967714|32|NZ_CP040564|CRISPRCasFinder,CRT matches to NZ_CP054036 (Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence) position: , mismatch: 11, identity: 0.656 

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ttccgatcagcgccgatccgctcctagtctat	Protospacer
..   ***************.** **** . .

113. spacer 2.6|967714|32|NZ_CP040564|CRISPRCasFinder,CRT matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 11, identity: 0.656 

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ttccgatcagcgccgatccgctcctagtctat	Protospacer
..   ***************.** **** . .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1241165 : 1317924 93 Salmonella_phage(37.93%) transposase,integrase,terminase,tail,protease,head,lysis,portal,holin,capsid,tRNA attL 1233246:1233262|attR 1323771:1323787
DBSCAN-SWA_2 1671362 : 1700955 32 Salmonella_phage(38.46%) tail,protease,holin NA
DBSCAN-SWA_3 1773006 : 1782177 10 Enterobacteria_phage(66.67%) tRNA NA
DBSCAN-SWA_4 1850485 : 1860991 10 Enterobacteria_phage(37.5%) NA NA
DBSCAN-SWA_5 1946985 : 1997735 71 Salmonella_phage(89.06%) integrase,terminase,tail,protease,head,portal,lysis,holin,plate,capsid attL 1941563:1941577|attR 1958039:1958053
DBSCAN-SWA_6 2101780 : 2108589 11 Salmonella_phage(33.33%) tail,integrase attL 2103990:2104012|attR 2113705:2113727
DBSCAN-SWA_7 2897795 : 2982531 94 Salmonella_phage(45.45%) integrase,terminase,tail,protease,lysis,portal,holin,tRNA attL 2921889:2921908|attR 2993672:2993691
DBSCAN-SWA_8 3046692 : 3055424 8 Enterobacteria_phage(14.29%) transposase,protease NA
DBSCAN-SWA_9 3157281 : 3220115 87 Salmonella_phage(64.18%) transposase,integrase,terminase,tail,protease,portal,lysis,holin,coat attL 3180352:3180374|attR 3220181:3220203
DBSCAN-SWA_10 4463958 : 4511002 50 Burkholderia_phage(40.91%) plate,tail,tRNA NA

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP040565
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 83622 : 92918 12 Escherichia_phage(28.57%) transposase NA

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage