CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040569	Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-8290 plasmid pCFSAN059542, complete sequence	0 crisprs	cas14j	0	0	1	0
NZ_CP040568	Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-8290 chromosome, complete genome	4 crisprs	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	0	20	11	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

38156 : 47452

Escherichia_phage(28.57%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000088645.1\|38156_38837_-	DNA methylase	A0A2I7RE86	Vibrio_phage	1.6e-28	36.4
WP_000091632.1\|38981_39170_-	hypothetical protein	NA	NA	NA	NA
WP_000369839.1\|39218_39575_-	hypothetical protein	NA	NA	NA	NA
WP_000490265.1\|39567_40038_-	hypothetical protein	NA	NA	NA	NA
WP_000925627.1\|40548_40971_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.0e-28	51.6
WP_022743179.1\|40970_42245_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	3.9e-156	64.9
WP_001541561.1\|42326_43304_-	ParB/RepB/Spo0J family partition protein	A0A1B0V750	Salmonella_phage	5.2e-84	53.2
WP_000427676.1\|43300_44506_-	ParA family protein	A0A077SL49	Escherichia_phage	1.5e-162	69.3
WP_000728917.1\|44920_45862_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	2.0e-72	54.3
WP_001541562.1\|45893_46460_-	DUF2913 family protein	NA	NA	NA	NA
WP_001527010.1\|46516_46852_-	hypothetical protein	NA	NA	NA	NA
WP_001541564.1\|47035_47452_-	hypothetical protein	O64348	Escherichia_phage	8.2e-07	42.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP040568

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040568_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040568_1

599297-599397

Orphan

Consensus_repeat	Method
GCTTCAGTGGCGAACGTCGTGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040568_1

>merge|NZ_CP040568|1|599297-599397|CRISPRCasFinder
GCTTCAGTGGCGAACGTCGTGAAGGCGGTCGTAATTTCAGCGGCGAACGTCGTGAAGGTGGTCGTGGTGATGGTCGTCGCTTCAGCGGCGAACGTCGTGAA

>NZ_CP040568|1|1|599297-599397|CRISPRCasFinder
GCTTCAGTGGCGAACGTCGTGAA	GGCGGTCGTAATTTCAGCGGCGAACGTCGTGAAGGTGGTCGTGGTGATGGTCGTC
GCTTCAGCGGCGAACGTCGTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040568.1\|WP_001294027.1\|600915_601446_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040568.1\|WP_000928379.1\|606593_606911_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|178979
NZ_CP040568.1\|WP_000421309.1\|604373_605369_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP040568.1\|WP_000059465.1\|593748_594018_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP040568.1\|WP_010723222.1\|597494_597575_+\|protein-YrbN	unknown	unknown	gnl\|CDD\|380282
NZ_CP040568.1\|WP_000207654.1\|585375_586719_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NZ_CP040568.1\|WP_014343907.1\|603486_604383_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
NZ_CP040568.1\|WP_000884721.1\|605585_606110_+\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696
NZ_CP040568.1\|WP_000130437.1\|602301_603309_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182505
NZ_CP040568.1\|WP_000089674.1\|592653_593598_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235333
NZ_CP040568.1\|WP_000802069.1\|596504_597389_+\|lipoprotein-NlpI	unknown	unknown	gnl\|CDD\|236875
NZ_CP040568.1\|WP_001040199.1\|592252_592654_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP040568.1\|WP_000380404.1\|606948_607392_+\|YhbP-family-protein	unknown	unknown	gnl\|CDD\|235127
NZ_CP040568.1\|WP_000532745.1\|601604_602324_+\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225577
NZ_CP040568.1\|WP_001670767.1\|594259_596395_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NZ_CP040568.1\|WP_000908562.1\|606103_606607_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP040568.1\|WP_000224386.1\|599610_600855_+\|tryptophan-permease	unknown	unknown	gnl\|CDD\|182492
NZ_CP040568.1\|WP_001031038.1\|587826_589329_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
NZ_CP040568.1\|WP_000105461.1\|587346_587799_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_CP040568.1\|WP_000133064.1\|589353_592032_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401

Protein	Function_ID	Function_description	E-value
NZ_CP040568.1\|WP_000928379.1\|606593_606911_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	4.3214e-44
NZ_CP040568.1\|WP_000421309.1\|604373_605369_-\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	3.77757e-116
NZ_CP040568.1\|WP_000059465.1\|593748_594018_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	7.70279e-54
NZ_CP040568.1\|WP_010723222.1\|597494_597575_+\|protein-YrbN	gnl\|CDD\|380282	NF033440, small_YrbN, protein YrbN. YrbN, a small protein of only 26 amino acids, is found in at least these genera: Escherichia, Salmonella, Enterobacter, Klebsiella, and Yersinia. It is known to be expressed in E. coli.	1.66225e-08
NZ_CP040568.1\|WP_000207654.1\|585375_586719_-\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NZ_CP040568.1\|WP_014343907.1\|603486_604383_-\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
NZ_CP040568.1\|WP_000884721.1\|605585_606110_+\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	1.82299e-84
NZ_CP040568.1\|WP_000130437.1\|602301_603309_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|182505	PRK10508, PRK10508, luciferase-like monooxygenase.	0
NZ_CP040568.1\|WP_000089674.1\|592653_593598_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235333	PRK05033, truB, tRNA pseudouridine synthase B; Provisional.	0
NZ_CP040568.1\|WP_000802069.1\|596504_597389_+\|lipoprotein-NlpI	gnl\|CDD\|236875	PRK11189, PRK11189, lipoprotein NlpI; Provisional.	0
NZ_CP040568.1\|WP_001040199.1\|592252_592654_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	9.9646e-53
NZ_CP040568.1\|WP_000380404.1\|606948_607392_+\|YhbP-family-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	1.36854e-99
NZ_CP040568.1\|WP_000532745.1\|601604_602324_+\|murein-L,D-transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.17265e-108
NZ_CP040568.1\|WP_001670767.1\|594259_596395_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NZ_CP040568.1\|WP_000908562.1\|606103_606607_+\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	7.2703e-63
NZ_CP040568.1\|WP_000224386.1\|599610_600855_+\|tryptophan-permease	gnl\|CDD\|182492	PRK10483, PRK10483, tryptophan permease; Provisional.	0
NZ_CP040568.1\|WP_001031038.1\|587826_589329_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	0
NZ_CP040568.1\|WP_000105461.1\|587346_587799_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	4.39218e-79
NZ_CP040568.1\|WP_000133064.1\|589353_592032_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0

>NZ_CP040568.1|WP_010723222.1|597494_597575_+|protein-YrbN
MKIADQFHDELCRLAAINFEAHVLHG
>NZ_CP040568.1|WP_000802069.1|596504_597389_+|lipoprotein-NlpI
MKPFLRWCFVATALTLAGCSNSAWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPYRSLWLYLVEQKLNEKQAKEALKARFEKSDKEQWGWNIVEFYLGDISEATLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ
>NZ_CP040568.1|WP_001670767.1|594259_596395_+|polyribonucleotide-nucleotidyltransferase
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAAAPEAPASEQAE
>NZ_CP040568.1|WP_000059465.1|593748_594018_+|30S-ribosomal-protein-S15
MSLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR
>NZ_CP040568.1|WP_000089674.1|592653_593598_+|tRNA-pseudouridine(55)-synthase-TruB
MSRPRRRGRDIHGVLLLDKPQGMSSNDVLQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVQERPVTFSAEQLASALETFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEVHCSKGTYIRTIIDDLGEKLGCGAHVTYLRRLTVSKYPVDRMVTLEHLQTLVAQAEQQGVPAAQLLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTTGAPLKGLVRVTEGEDDKFIGMGEIDDEGRVAPRRLVVEYPA
>NZ_CP040568.1|WP_001040199.1|592252_592654_+|30S-ribosome-binding-factor-RbfA
MAKEFGRPQRVAQEMQKEIAIILQREIKDPRLGMMTTVSGVEMSRDLAYAKVFVTFLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMRMSNLVTNVVKHDEERRVNPDDSKED
>NZ_CP040568.1|WP_000133064.1|589353_592032_+|translation-initiation-factor-IF-2
MTDVTLKALAAERQVSVDRLVQQFADAGIRKSADDSVSAQEKQTLLAHLNREAVSGPDKLTLQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKRDPQEAERLAAEEQAQREAEEQARREAEEQAKREAQQKAEREAAEQAKREAAEKAKREAAEKDKVSNQQTDDMTKTAQAEKARRENEAAELKRKAEEEARRKLEEEARRVAEEARRMAEENKWTATPEPVEDTSDYHVTTSQHARQAEDENDREVEGGRGRGRNAKAARPAKKGKHAESKADREEARAAVRGGKGGKRKGSSLQQGFQKPAQAVNRDVVIGETITVGELANKMAVKGSQVIKAMMKLGAMATINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETDNGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAGVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVIESESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGTIKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRVGDMIEVFEIIEIQRTIA
>NZ_CP040568.1|WP_001031038.1|587826_589329_+|transcription-termination/antitermination-protein-NusA
MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIEIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATLAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIEGLTDEKAGELIMAARNICWFGDEA
>NZ_CP040568.1|WP_000105461.1|587346_587799_+|ribosome-maturation-factor-RimP
MSTLEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF
>NZ_CP040568.1|WP_000207654.1|585375_586719_-|argininosuccinate-synthase
MTTILKHLPAGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEKAYSTDSNMLGATHEAKDLEFLNSSVKIVNPIMGVKFWDESVKIPAEVVTVRFEQGHPVALNGKTFSDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLLTGIHNEDTIEQYHSHGRQLGKLLYQGRWFDSQALMLRDGLQRWVASQITGEVTLELRRGNDYSILNTVSDNLTYKAERLTMEKGESVFSPDDRIGQLTMRNLDITDTREKLFGYAKAGLLTASSATGLPQVENLENKGK
>NZ_CP040568.1|WP_000224386.1|599610_600855_+|tryptophan-permease
MATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALVFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFAFALLVAFVVWLSTKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESHASYTPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPRTIVKCLIYGTLLALALYSVWLLGTMGNIPRPEFIGIAQKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDSAMGRFKTALLTFLPPMIGGLLYPNGFLYAIGYAGLAATIWAAIVPALLARKSRERFGSPKFRVWGGKPMIVLILLFGVGNALVHILSSFNLLPVYQ
>NZ_CP040568.1|WP_001294027.1|600915_601446_-|hypothetical-protein
MSEPASFFLHAHITESNLKKFFHSPATNIKDYDDWLPWFTEEQRLYGDPAKMLNNLATCNSGESEKNIYAEHINFNKETQIVTMDHIFLSESYEIFMPLMACVRGIEKFITPGENNFALIYYYWWGSEIAIALEFDANGSRITANPKAENLTIADAFFDEHGEALAEELYNKQGFI
>NZ_CP040568.1|WP_000532745.1|601604_602324_+|murein-L,D-transpeptidase
MGRKGLLAIVLLSLFIAFILKFFWLTPYDEDVYLPVEKPVASSLKIIHPGDQLFIRILKAEDKLELWASANNKPYKLYKTWTICAWSGGLGPKHKQGDGKSPEGFYATNKGLLNPNSRYHLAFNIGYPNAYDRANGYTGDFIMVHGNCVSAGCYAMTDAGIEEIYQLVAQALNSGQKSVPVHIFPFTMNDENMRQAQAWPEYNFWRMLKPGYDYFEKNRRLPTITVENRRYKISPTTLP
>NZ_CP040568.1|WP_000130437.1|602301_603309_-|LLM-class-flavin-dependent-oxidoreductase
MTDKTIPFSVLDLAPIPEGSSAKEAFTHSLDLARLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQPTMRALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPGYGEQIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRTQFKPSARLEKPYAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIENMETFRSPSEQYGVQQALSMSLVGDKAKVRHGLESILRETQADEIMVNGQIFDHQARLHSFDLAMDVKEELLG
>NZ_CP040568.1|WP_014343907.1|603486_604383_-|U32-family-peptidase
MAVRGAMKYSLGPVLYYWPKETLEDFYQQAAKSSADVIYLGEAVCSKRRATKVGDWLEMAKSLAASGKQVVLSTLALVQASSELSELKRYVDNGDFLLEASDLGVVNLCAERKLPFVAGHALNCYNAVTLRRLLKEGMVRWCMPVELSRDWLVNLLNQCDELGIRNQFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRDVLSQENQQVFVLNGIQTMSGYVYNLGNELTSMQGLVDIVRLSPLGTETFAMLDAFRANENGGAPLPLAAHSDCNGYWKRLAGLELQA
>NZ_CP040568.1|WP_000421309.1|604373_605369_-|U32-family-peptidase
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAIRFYHRNFDVHRVVLPRVLSIHQVKQLARVTPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNDVLIDRYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCKAAPQNFVPQRDWMETLGAMSEGTQTTLGAYHRKWQ
>NZ_CP040568.1|WP_000884721.1|605585_606110_+|SCP2-domain-containing-protein
MLDKLRSRLVHAGPSLMSVPVKLTPFALKRQVLEQVLSWQFRQALADGELEFLEGRWLSIHVRDIDLKWYTTVENEKLIVSQQADADVSFSADASDLLMIAARKQDPDTLFFQRRLVIEGDTELGLYVKNLMDAIELEQMPKALRVMLLQLADFVEAGMKNSPETKQTSVGEPC
>NZ_CP040568.1|WP_000908562.1|606103_606607_+|N-acetyltransferase
MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGLVATDDEGQVVGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNEFGYAAVVTLGDPALYSRFGFELAAHYDLHCRWPGTESAFQVHRLAEDALEGVTGLVEYHDHFNRF
>NZ_CP040568.1|WP_000928379.1|606593_606911_-|GIY-YIG-nuclease-family-protein
MLMATMTPWYLYLIRTADNALYTGITTDVARRYRQHQTGKGAKALRGKGELTLAFAAQVGDRSLALRIEYRIKQLTKRQKERLVTEREAFEALLSSLQTPVLKND
>NZ_CP040568.1|WP_000380404.1|606948_607392_+|YhbP-family-protein
MDTLTAIGRWLAKQHVVTWCVHHEGELWCANAFYLFDAQNVALYLLTDDKTRHAQMSGACAPVAGTVNGQPKTVARIRGVQFKGEIRRLEGQESDAARKAYLRRFPVARVLPAPVWEIRLDEIKFTDNTLGFGKKLHWLRDSRAQQA

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Crispr_ID: NZ_CP040568_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040568_2

948675-950289

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

26 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NZ_CP040568_2

>merge|NZ_CP040568|2|948675-950289|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGTTTGCCGATCCCCTTCCAGACCACCCTTTACAGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCAGAGTTGTATCTTACCCTGTTTACGTTTCGTGTTCCCCGCGCCAGCGGGGATAAACCGTTATCCCAATATATTTCGCTATCAGTTACATCGTGTTCCCCGCGCCAGCGGGGATAAACCGGACTGTTTATACCGGATTCCATGCGTTTTCAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAATTACTGGCTAACGACGAACTGACAGTTGAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCCAGAACCGTTTGACTTACTGTGGCCATTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCTTTGGTGAAGATTTCTGATTTGGTCATTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGATCGGGTGGTGCCGGTGGGCCATGTGGCGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAGCGGTTGAGTAACTCCTCGTCCACGTCGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCTCCAGCGCTCGAATTTATTTGAGGCCACCACGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTTGATACGTAGTATTCATTACGCCTCCTAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGAGGTCAATAAAAAATGGTGTGGCTTTACCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGCATCAGCGCCGATCCGTTCATAGTGCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGAACAGGAACAGGAAAAAAAAGATTTGTCCGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGATCCTCAACGGTCAGGCTGTTTAGTTCCTGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGAGGATGGAATATTTCCGAGGCTGGCGATTGTGTTCCCCGCGCTAGCGGGGATAAACCGATGCCGGAACGCTGATGGCGTTTGACATGAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAATTATTTCTGTGGCTGGGGTTTCGATTCGATGTGTTCCCCGCGCCAGCGGGGATAAACCGAATTATTTCTGTGGCTGGGGTTTCGATTCGATGTGTTCCCCGCGCCAGCGGGGATAAACCGTGACGCTGGTCTATACCGGCAACGAACGCGACGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGACGGTGACGTCAGTGCCGAAGGCGAAATAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGCTTACGCTATTTACGACGTTATTGAGCAGTGTTCCCCGCGCCAGCAGGGATAAATCGAAACGAAAGAGGCTATGCGGTTGTTTATCGGTGTGTTCCCAGCGCCAGCGGGGATAAACCGCAGGTTATGCGCAAAAATTAATTCATATTATAGTGTTCCCCGCGCCAGCAGGGATAAACCGGACGAGTTCTGGAAATGGTTAGCTGATAAAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTCATCGGCAGCGTCACGCAATATGAAGATGTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP040568|2|1|948675-950228|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGCCGATCCCCTTCCAGACCACCCTTTACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCAGAGTTGTATCTTACCCTGTTTACGTTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATCCCAATATATTTCGCTATCAGTTACATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTGTTTATACCGGATTCCATGCGTTTTCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATTACTGGCTAACGACGAACTGACAGTTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCAGAACCGTTTGACTTACTGTGGCCATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTTTGGTGAAGATTTCTGATTTGGTCATTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCCAGCGCTCGAATTTATTTGAGGCCACCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTGATACGTAGTATTCATTACGCCTCCTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGAGGTCAATAAAAAATGGTGTGGCTTTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAGGATGGAATATTTCCGAGGCTGGCGATT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ATGCCGGAACGCTGATGGCGTTTGACATGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTATTTCTGTGGCTGGGGTTTCGATTCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTATTTCTGTGGCTGGGGTTTCGATTCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGCTGGTCTATACCGGCAACGAACGCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGACGGTGACGTCAGTGCCGAAGGCGAAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCTTACGCTATTTACGACGTTATTGAGCA
GTGTTCCCCGCGCCAGCAGGGATAAATCG	AAACGAAAGAGGCTATGCGGTTGTTTATCGGTGTG
TTCCCAGCGCCAGCGGGGATAAACCGCAG	GTTATGCGCAAAAATTAATTCATATTATAGTG
TTCCCCGCGCCAGCAGGGATAAACCGGAC	GAGTTCTGGAAATGGTTAGCTGATAAAGAGTG
TTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP040568|2|2|948675-950289|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGCCGATCCCCTTCCAGACCACCCTTTACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCAGAGTTGTATCTTACCCTGTTTACGTTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATCCCAATATATTTCGCTATCAGTTACATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTGTTTATACCGGATTCCATGCGTTTTCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATTACTGGCTAACGACGAACTGACAGTTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCAGAACCGTTTGACTTACTGTGGCCATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTTTGGTGAAGATTTCTGATTTGGTCATTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCCAGCGCTCGAATTTATTTGAGGCCACCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTGATACGTAGTATTCATTACGCCTCCTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGAGGTCAATAAAAAATGGTGTGGCTTTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAGGATGGAATATTTCCGAGGCTGGCGATT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ATGCCGGAACGCTGATGGCGTTTGACATGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTATTTCTGTGGCTGGGGTTTCGATTCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTATTTCTGTGGCTGGGGTTTCGATTCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGCTGGTCTATACCGGCAACGAACGCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGACGGTGACGTCAGTGCCGAAGGCGAAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCTTACGCTATTTACGACGTTATTGAGCA
GTGTTCCCCGCGCCAGCAGGGATAAATCG	AAACGAAAGAGGCTATGCGGTTGTTTATCGGT
GTGTTCCCAGCGCCAGCGGGGATAAACCG	CAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP040568|2|1|948675-950289|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGCCGATCCCCTTCCAGACCACCCTTTACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCAGAGTTGTATCTTACCCTGTTTACGTTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATCCCAATATATTTCGCTATCAGTTACATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTGTTTATACCGGATTCCATGCGTTTTCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATTACTGGCTAACGACGAACTGACAGTTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCAGAACCGTTTGACTTACTGTGGCCATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTTTGGTGAAGATTTCTGATTTGGTCATTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCCAGCGCTCGAATTTATTTGAGGCCACCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTGATACGTAGTATTCATTACGCCTCCTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGAGGTCAATAAAAAATGGTGTGGCTTTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAGGATGGAATATTTCCGAGGCTGGCGATT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ATGCCGGAACGCTGATGGCGTTTGACATGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTATTTCTGTGGCTGGGGTTTCGATTCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTATTTCTGTGGCTGGGGTTTCGATTCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGCTGGTCTATACCGGCAACGAACGCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGACGGTGACGTCAGTGCCGAAGGCGAAATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCTTACGCTATTTACGACGTTATTGAGCA
GTGTTCCCCGCGCCAGCAGGGATAAATCG	AAACGAAAGAGGCTATGCGGTTGTTTATCGGT
GTGTTCCCAGCGCCAGCGGGGATAAACCG	CAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040568.1\|WP_001145543.1\|956466_957420_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP040568.1\|WP_000480218.1\|942138_942495_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
NZ_CP040568.1\|WP_000368584.1\|960539_962096_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP040568.1\|WP_000210863.1\|944552_946190_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP040568.1\|WP_000186400.1\|935659_938416_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP040568.1\|WP_000117946.1\|962092_962653_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP040568.1\|WP_000029738.1\|957864_960528_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP040568.1\|WP_022742814.1\|947706_948378_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP040568.1\|WP_000080404.1\|955644_956379_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP040568.1\|WP_001290660.1\|953856_955569_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP040568.1\|WP_001208013.1\|950386_951184_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP040568.1\|WP_000210449.1\|943524_944325_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP040568.1\|WP_000046849.1\|938473_939769_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP040568.1\|WP_001532579.1\|942460_942757_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_CP040568.1\|WP_000108313.1\|951271_951634_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP040568.1\|WP_000226838.1\|939820_942055_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP040568.1\|WP_000206415.1\|962666_963725_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP040568.1\|WP_000706479.1\|934473_935616_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
NZ_CP040568.1\|WP_000036734.1\|946272_947571_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP040568.1\|WP_000210927.1\|952057_953857_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862

Protein	Function_ID	Function_description	E-value
NZ_CP040568.1\|WP_001145543.1\|956466_957420_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP040568.1\|WP_000480218.1\|942138_942495_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	6.12601e-20
NZ_CP040568.1\|WP_000368584.1\|960539_962096_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP040568.1\|WP_000210863.1\|944552_946190_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP040568.1\|WP_000186400.1\|935659_938416_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP040568.1\|WP_000117946.1\|962092_962653_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
NZ_CP040568.1\|WP_000029738.1\|957864_960528_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP040568.1\|WP_022742814.1\|947706_948378_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	5.02093e-155
NZ_CP040568.1\|WP_000080404.1\|955644_956379_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40487e-139
NZ_CP040568.1\|WP_001290660.1\|953856_955569_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP040568.1\|WP_001208013.1\|950386_951184_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	8.44116e-102
NZ_CP040568.1\|WP_000210449.1\|943524_944325_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.52469e-158
NZ_CP040568.1\|WP_000046849.1\|938473_939769_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP040568.1\|WP_001532579.1\|942460_942757_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	1.63617e-13
NZ_CP040568.1\|WP_000108313.1\|951271_951634_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP040568.1\|WP_000226838.1\|939820_942055_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP040568.1\|WP_000206415.1\|962666_963725_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.67517e-131
NZ_CP040568.1\|WP_000706479.1\|934473_935616_+\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
NZ_CP040568.1\|WP_000036734.1\|946272_947571_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP040568.1\|WP_000210927.1\|952057_953857_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0

>NZ_CP040568.1|WP_022742814.1|947706_948378_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILVKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP040568.1|WP_000036734.1|946272_947571_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP040568.1|WP_000210863.1|944552_946190_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP040568.1|WP_000210449.1|943524_944325_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSFPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP040568.1|WP_001532579.1|942460_942757_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MRMVKLTPKASEDLENIWHYGWQHFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFKRHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>NZ_CP040568.1|WP_000480218.1|942138_942495_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>NZ_CP040568.1|WP_000226838.1|939820_942055_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNIQAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>NZ_CP040568.1|WP_000046849.1|938473_939769_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NZ_CP040568.1|WP_000186400.1|935659_938416_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>NZ_CP040568.1|WP_000706479.1|934473_935616_+|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>NZ_CP040568.1|WP_001208013.1|950386_951184_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKVRPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDSSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP040568.1|WP_000108313.1|951271_951634_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP040568.1|WP_000210927.1|952057_953857_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPRVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRSFMQQRAAEGVEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP040568.1|WP_001290660.1|953856_955569_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENIAEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP040568.1|WP_000080404.1|955644_956379_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP040568.1|WP_001145543.1|956466_957420_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP040568.1|WP_000029738.1|957864_960528_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP040568.1|WP_000368584.1|960539_962096_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>NZ_CP040568.1|WP_000117946.1|962092_962653_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NZ_CP040568.1|WP_000206415.1|962666_963725_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA

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Crispr_ID: NZ_CP040568_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040568_3

966421-967059

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

10 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP040568_3

>merge|NZ_CP040568|3|966421-967059|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGTGAGCAACGACAGTAAATAATTTTTCGTGCTGGTGTTCCCCGCGCCAGCGGGGATAAACCGAGCCGTTTCCGCTAAATACCCCCGCAGTGATTGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCTTGAATATGATTGCGGGTATATGTGGATAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCTGGTTATAACATCGCAGCAAAATCAAAAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCACTATTTCGAATGTCTCGACGCCAGATTTAGTGTTCCCCGCGCCAGCGGGGATAAACCGAACGAATTGAGACTATTAGAGATTATTCGCCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAACCCATTAATTAACTAAGCAGTAATAAACGTGTTCCCCGCGCCAGCGGGGATAAACCGTGACGAGGTGCGAGCGATGGTATCAAGGCCTAGTGTTTCCCGCGCCAGCGGGGATAAACCGGGTTAACCAGGGGTTTTTCCCCACTATTTCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAATGTTCCCCGCGCCAGCGGGGATAAACAC

>NZ_CP040568|3|2|966421-966998|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAGCAACGACAGTAAATAATTTTTCGTGCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCCGTTTCCGCTAAATACCCCCGCAGTGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCTTGAATATGATTGCGGGTATATGTGGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTGGTTATAACATCGCAGCAAAATCAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCACTATTTCGAATGTCTCGACGCCAGATTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAACCCATTAATTAACTAAGCAGTAATAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
GTGTTTCCCGCGCCAGCGGGGATAAACCG	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP040568|3|3|966421-967059|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAGCAACGACAGTAAATAATTTTTCGTGCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCCGTTTCCGCTAAATACCCCCGCAGTGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCTTGAATATGATTGCGGGTATATGTGGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTGGTTATAACATCGCAGCAAAATCAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCACTATTTCGAATGTCTCGACGCCAGATTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAACCCATTAATTAACTAAGCAGTAATAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
GTGTTTCCCGCGCCAGCGGGGATAAACCG	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
ATGTTCCCCGCGCCAGCGGGGATAAACAC

>NZ_CP040568|3|2|966421-967059|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGAGCAACGACAGTAAATAATTTTTCGTGCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCCGTTTCCGCTAAATACCCCCGCAGTGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCTTGAATATGATTGCGGGTATATGTGGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTGGTTATAACATCGCAGCAAAATCAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCACTATTTCGAATGTCTCGACGCCAGATTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAACCCATTAATTAACTAAGCAGTAATAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
GTGTTTCCCGCGCCAGCGGGGATAAACCG	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
ATGTTCCCCGCGCCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040568.1\|WP_001221538.1\|974430_975192_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP040568.1\|WP_001145543.1\|956466_957420_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP040568.1\|WP_000085114.1\|963735_964482_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP040568.1\|WP_001092263.1\|969288_970728_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP040568.1\|WP_000117946.1\|962092_962653_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP040568.1\|WP_022742813.1\|964463_965114_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP040568.1\|WP_000029738.1\|957864_960528_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP040568.1\|WP_000144832.1\|965110_966031_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP040568.1\|WP_000741650.1\|972214_972925_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP040568.1\|WP_000372384.1\|968370_969279_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP040568.1\|WP_001219245.1\|972924_973404_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP040568.1\|WP_001518648.1\|966030_966324_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP040568.1\|WP_000490481.1\|967073_968120_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP040568.1\|WP_000368584.1\|960539_962096_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP040568.1\|WP_001173663.1\|970714_971320_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP040568.1\|WP_000080404.1\|955644_956379_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP040568.1\|WP_001118109.1\|971337_971694_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP040568.1\|WP_000134246.1\|973400_974450_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP040568.1\|WP_000206415.1\|962666_963725_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP040568.1\|WP_000517480.1\|971884_972196_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156

Protein	Function_ID	Function_description	E-value
NZ_CP040568.1\|WP_001221538.1\|974430_975192_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_CP040568.1\|WP_001145543.1\|956466_957420_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP040568.1\|WP_000085114.1\|963735_964482_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.90971e-48
NZ_CP040568.1\|WP_001092263.1\|969288_970728_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP040568.1\|WP_000117946.1\|962092_962653_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
NZ_CP040568.1\|WP_022742813.1\|964463_965114_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	2.10819e-74
NZ_CP040568.1\|WP_000029738.1\|957864_960528_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP040568.1\|WP_000144832.1\|965110_966031_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.21084e-157
NZ_CP040568.1\|WP_000741650.1\|972214_972925_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.67998e-119
NZ_CP040568.1\|WP_000372384.1\|968370_969279_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP040568.1\|WP_001219245.1\|972924_973404_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
NZ_CP040568.1\|WP_001518648.1\|966030_966324_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
NZ_CP040568.1\|WP_000490481.1\|967073_968120_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP040568.1\|WP_000368584.1\|960539_962096_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP040568.1\|WP_001173663.1\|970714_971320_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_CP040568.1\|WP_000080404.1\|955644_956379_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40487e-139
NZ_CP040568.1\|WP_001118109.1\|971337_971694_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
NZ_CP040568.1\|WP_000134246.1\|973400_974450_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP040568.1\|WP_000206415.1\|962666_963725_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.67517e-131
NZ_CP040568.1\|WP_000517480.1\|971884_972196_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64

>NZ_CP040568.1|WP_001518648.1|966030_966324_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NZ_CP040568.1|WP_000144832.1|965110_966031_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NZ_CP040568.1|WP_022742813.1|964463_965114_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLWFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFILREASVDAYRQQQIRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA
>NZ_CP040568.1|WP_000085114.1|963735_964482_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPLAPQLLEGSAAGVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NZ_CP040568.1|WP_000206415.1|962666_963725_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>NZ_CP040568.1|WP_000117946.1|962092_962653_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NZ_CP040568.1|WP_000368584.1|960539_962096_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>NZ_CP040568.1|WP_000029738.1|957864_960528_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP040568.1|WP_001145543.1|956466_957420_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP040568.1|WP_000080404.1|955644_956379_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP040568.1|WP_000490481.1|967073_968120_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP040568.1|WP_000372384.1|968370_969279_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP040568.1|WP_001092263.1|969288_970728_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTERRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP040568.1|WP_001173663.1|970714_971320_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP040568.1|WP_001118109.1|971337_971694_+|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP040568.1|WP_000517480.1|971884_972196_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP040568.1|WP_000741650.1|972214_972925_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLYDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP040568.1|WP_001219245.1|972924_973404_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP040568.1|WP_000134246.1|973400_974450_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP040568.1|WP_001221538.1|974430_975192_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Crispr_ID: NZ_CP040568_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040568_4

1157976-1158085

Orphan

Consensus_repeat	Method
TGTCCCACCCTGTACCACTTTTTTTTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040568_4

>merge|NZ_CP040568|4|1157976-1158085|CRISPRCasFinder
TGTCCCACCCTGTACCACTTTTTTTTAATCAAATTCTCTAAGGTGGGACGCTGTAACCCTCGCCAGCTCTGCGTGTACCACTTGTCCCACCCTGTACCACCTTTTTTTAA

>NZ_CP040568|4|4|1157976-1158085|CRISPRCasFinder
TGTCCCACCCTGTACCACTTTTTTTTAA	TCAAATTCTCTAAGGTGGGACGCTGTAACCCTCGCCAGCTCTGCGTGTACCACT
TGTCCCACCCTGTACCACCTTTTTTTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040568.1\|WP_001520307.1\|1158102_1160172_-\|DUF927-domain-containing-protein	unknown	unknown	gnl\|CDD\|227806
NZ_CP040568.1\|WP_000248794.1\|1162035_1163229_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376935
NZ_CP040568.1\|WP_022742808.1\|1151557_1152571_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP040568.1\|WP_000811366.1\|1147923_1148766_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|284075
NZ_CP040568.1\|WP_001542208.1\|1164439_1165504_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|170049
NZ_CP040568.1\|WP_000776032.1\|1149352_1149988_+\|3-hexulose-6-phosphate-synthase	unknown	unknown	gnl\|CDD\|132172
NZ_CP040568.1\|WP_000749979.1\|1154563_1154848_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225957
NZ_CP040568.1\|WP_000480483.1\|1153929_1154451_-\|PTS-sorbitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226253
NZ_CP040568.1\|WP_000204908.1\|1167553_1167757_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040568.1\|WP_010989063.1\|1163618_1164212_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040568.1\|WP_010989064.1\|1155452_1156271_-\|DUF4435-domain-containing-protein	unknown	unknown	gnl\|CDD\|373095
NZ_CP040568.1\|WP_001047672.1\|1166841_1167408_-\|phage-repressor-protein-CI	unknown	unknown	gnl\|CDD\|311152
NZ_CP040568.1\|WP_001098984.1\|1152581_1153562_-\|PTS-glucitol/sorbitol-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|226255
NZ_CP040568.1\|WP_000290918.1\|1165831_1166842_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|222904
NZ_CP040568.1\|WP_000701821.1\|1160207_1160423_-\|AlpA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225848
NZ_CP040568.1\|WP_001682344.1\|1148765_1149329_+\|6-phospho-3-hexuloisomerase	unknown	unknown	gnl\|CDD\|132171
NZ_CP040568.1\|WP_000973738.1\|1153558_1153933_-\|PTS-glucitol/sorbitol-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|226254
NZ_CP040568.1\|WP_010989065.1\|1154942_1155299_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP040568.1\|WP_001161781.1\|1160873_1161701_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040568.1\|WP_001542209.1\|1164258_1164426_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|170049

Protein	Function_ID	Function_description	E-value
NZ_CP040568.1\|WP_001520307.1\|1158102_1160172_-\|DUF927-domain-containing-protein	gnl\|CDD\|227806	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair].	0
NZ_CP040568.1\|WP_000248794.1\|1162035_1163229_-\|hypothetical-protein	gnl\|CDD\|376935	pfam02810, SEC-C, SEC-C motif. The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.	3.20348e-07
NZ_CP040568.1\|WP_022742808.1\|1151557_1152571_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	3.01256e-66
NZ_CP040568.1\|WP_000811366.1\|1147923_1148766_+\|hypothetical-protein	gnl\|CDD\|284075	pfam06560, GPI, Glucose-6-phosphate isomerase (GPI). This family consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (EC:5.3.1.9).	1.31365e-90
NZ_CP040568.1\|WP_001542208.1\|1164439_1165504_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|170049	PRK09692, PRK09692, integrase; Provisional.	1.47537e-117
NZ_CP040568.1\|WP_000776032.1\|1149352_1149988_+\|3-hexulose-6-phosphate-synthase	gnl\|CDD\|132172	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase. Members of this protein family are 3-hexulose-6-phosphate synthase (HPS), or the HPS domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.	4.14833e-98
NZ_CP040568.1\|WP_000749979.1\|1154563_1154848_-\|transcriptional-regulator	gnl\|CDD\|225957	COG3423, Nlp, Predicted transcriptional regulator [Transcription].	5.31271e-38
NZ_CP040568.1\|WP_000480483.1\|1153929_1154451_-\|PTS-sorbitol-transporter-subunit-IIC	gnl\|CDD\|226253	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism].	2.29561e-79
NZ_CP040568.1\|WP_010989064.1\|1155452_1156271_-\|DUF4435-domain-containing-protein	gnl\|CDD\|373095	pfam14491, DUF4435, Protein of unknown function (DUF4435). This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 285 and 362 amino acids in length. This domain is sometimes associated with AAA domains.	2.33424e-50
NZ_CP040568.1\|WP_001047672.1\|1166841_1167408_-\|phage-repressor-protein-CI	gnl\|CDD\|311152	pfam07022, Phage_CI_repr, Bacteriophage CI repressor helix-turn-helix domain. This family consists of several phage CI repressor proteins and related bacterial sequences. The CI repressor is known to function as a transcriptional switch, determining whether transcription is lytic or lysogenic.	5.14949e-24
NZ_CP040568.1\|WP_001098984.1\|1152581_1153562_-\|PTS-glucitol/sorbitol-transporter-subunit-IIB	gnl\|CDD\|226255	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism].	1.31232e-179
NZ_CP040568.1\|WP_000290918.1\|1165831_1166842_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|222904	PHA02601, int, integrase; Provisional.	0
NZ_CP040568.1\|WP_000701821.1\|1160207_1160423_-\|AlpA-family-transcriptional-regulator	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	2.37497e-21
NZ_CP040568.1\|WP_001682344.1\|1148765_1149329_+\|6-phospho-3-hexuloisomerase	gnl\|CDD\|132171	TIGR03127, RuMP_HxlB, 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.	4.43418e-80
NZ_CP040568.1\|WP_000973738.1\|1153558_1153933_-\|PTS-glucitol/sorbitol-transporter-subunit-IIA	gnl\|CDD\|226254	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism].	5.89598e-59
NZ_CP040568.1\|WP_010989065.1\|1154942_1155299_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.55924e-09
NZ_CP040568.1\|WP_001542209.1\|1164258_1164426_-\|hypothetical-protein	gnl\|CDD\|170049	PRK09692, PRK09692, integrase; Provisional.	2.20982e-13

>NZ_CP040568.1|WP_010989064.1|1155452_1156271_-|DUF4435-domain-containing-protein
MLLLFRSPKYSRKIFFTLEGESDIRFLNTHFADERIHYDSPCSGKPEVINAVQLLRSHGKQNVYGLCDADFDILEGNSYENIHFTDCHDLEMMLIEGGSFDKFISEFLKTSILRIHTLEDIRNNLKESIIDVTYKIGILKWLNFKNNLLLMFKGMKYDNFITFVDFSANIDIDNYIQHILDRSPRKPPHCDFNFLKKEYQLLYNKQADYKYVCNGHDFTYITMMAFHSEFSRDKNITQEKVESHLRIAYSATAFQRTNIYNELSGLIDSHNI
>NZ_CP040568.1|WP_010989065.1|1154942_1155299_+|helix-turn-helix-transcriptional-regulator
MPEDGCCPERDNSCMFRCRIAIVIGKRLKISRVRADLTQAELGALAGLDEESASARISSYEKEVHAPDFKLVCKLAAALDVPEAYFYAVDDELAELILQYHRFKKNNPGSTLILSGNI
>NZ_CP040568.1|WP_000749979.1|1154563_1154848_-|transcriptional-regulator
MKKSTTKDWHPADIVAALHKRGTSLAKLSREAGLASSTLSNTLTRPWPKGEWLIAIALDMHPSEIWPGRYLNSSNKREPRKPLHPMTTTDNSGT
>NZ_CP040568.1|WP_000480483.1|1153929_1154451_-|PTS-sorbitol-transporter-subunit-IIC
MFLVSLAEGFIHLFQAAGKIFLDMMTGLIPMLICLLLAINFLMKLVGTVRMEKVAALLGRSRILTYGVLPVLGWFFMSSPGALTLGKLLPEKSKPGYEDALGTTAHPLTSLFPHVVPSELFVWLGVAAGVKALGLPVTSLALRYIAAAMLIGLIRGIITEYLFLRLSRRGNAP
>NZ_CP040568.1|WP_000973738.1|1153558_1153933_-|PTS-glucitol/sorbitol-transporter-subunit-IIA
MMIYCARITAIGLFVADGLTDKMLITFDSNGPKDCLDYSLSLEPSFREESLMILPGDRLLLAGHDYLVTAVGKGVQQALFELGHLTLVFDGDLKPCHTGAIHLSGPVPKLHDLHGNLVIEEGRP
>NZ_CP040568.1|WP_001098984.1|1152581_1153562_-|PTS-glucitol/sorbitol-transporter-subunit-IIB
MNTVLIPPGPGGYGKGLWLPVASGKKVLSLTGREIHPVAIEIGALTESEVVNGFSDIPPDNDILCVVINCAGSLRCGLYPQKGIPTINVLPTWRAGPLAQFISEDNYVSGVTIEQLVLVDTAEAPDGEPEPVSVTAPRIITTPPPARGAEKLVRMVERTGTAVGHVIALLFAASREAVDVSLRNVIPFMAFVSLLIALVQETALGSLIAHALTPLANSLWGLVLLSLICGIPFLSPVLGPGAAISQVIGVMIGTQIGAGAISPAFALPALFAINVQVGCDFVPVGLSMQEAKPETIAKGVPAFLLSRQLTGPLAVIIGWLFSLGLF
>NZ_CP040568.1|WP_022742808.1|1151557_1152571_-|Gfo/Idh/MocA-family-oxidoreductase
MNKIRAAVVGAGIYGKHHMNAYRHNPDTVLVAICDTDTERCDDLAMAYGIQGYTRLDRLLQQEAIDIVSVATPDPYHTESILTALRHGQHVLAEKPLATSVRECELIVEMAQQRDLLVGVDFHKRWDPAVMRIKAELENPETGCILRGHISMDDVITVPTQWLNWAGASSPVWFLGSHCFDLVRHLSGQEVVSVYAVGQKRLMVECGLDTFDIVQSLLTMADGSSWGVENSWVLPEGFPKDNDGRIDILCEATYIRSTSQHRGLEITTPALTLTPNSYFINYRNGVASGFGIDPINDFVRAVRHKAPYPVTAEDGLAVSRICEAVHRSLESGKPEDV
>NZ_CP040568.1|WP_000776032.1|1149352_1149988_+|3-hexulose-6-phosphate-synthase
MKLQLALDELTLPEAMVFMDKVVDDVDIIEVGTPFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADMLAVHTGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVLLQHH
>NZ_CP040568.1|WP_001682344.1|1148765_1149329_+|6-phospho-3-hexuloisomerase
METQSVAGVACSDLNQAMSRIDGAALARLEQAIADAKAVFVFGAGRSLLMLKAFAMRLMHIGLKVHVVGDVVTPALQKGDLLLLASASGETASLVNVATKAKQLGGTVALLTIFPESTLGKLAGVAVRIPAYSDKLPDGPENVKGILPGGSLFEEAVMVLGDAMIVNLAQSTGYRLTKGFALHANLE
>NZ_CP040568.1|WP_000811366.1|1147923_1148766_+|hypothetical-protein
MKQLHHSGLPLYLDDDGVMALKPPLNYLGFGRKSAGQMAVVLPEFTEGLRNEPAYDVYRGLSFAEDQERLAADQYQYDITIIMPGTIGKERKKTSGHYHGYNDTRRNTHPEVYEVIKGTAAYILQKSPDFAAAPQELVVDDLIVAVVKEGQSIIVPPNYGHCSINIGDGPLVFSNLAYKPCTVHYDTVQFYHGMACYIVEENGQLCVRKNHYYPRVPRIKFATVKENPHLGITFDMPLYQRYRAAPERFHFLGHVDNYVREIMGMLQYEDDLFPLCQEDA
>NZ_CP040568.1|WP_001520307.1|1158102_1160172_-|DUF927-domain-containing-protein
MKRAPFLCKQSPDRTLEVVILAGSLAWETSRVWRKDPDREDDVPPMVLGPNELADLSNLTIIRPDTLYVRVLRTGDISEEDLLKIAVKLAHAGVQMARLMSPDGELLENWTGQLERLRQERPSDILPDHFRLDEEALWFDKLTERRDGESDVQPQRICSPLRVTAITCDSHDGSYGRLLEWHTTTGQLRRWAMPMAMLSGNGEELRRILLENGLTNISTRPALRSLLCEYISRSLPGRRVTCVEKTGWHNGVYVLPDEVIGPDGDNVILQGSHYLTGGFAQAGTLAEWQEQVAALCAGNSRLVFAVCCALAAPLLRLTGTGGGGFHLRGESTDGKTTVMKVAASVCGGTDYWHSWRATGNALEGIASRHNDALLPLDELREVDPREAGMIAYMLANGQGKGRARTDGEVRNRRHWTLLLFSTGELSLAEHTERAGERIYAGMDVRMVQIPSDTGQHGAFEQLHGFASGQQFADTLCDRVARFHGTAFRAWLAFLTHDQDASTTLARELLRRYQNALMPDNAGNQVQRIVARFALLAAAGEIATLHGITGWQKGTAYEAVQICLHAWLNERGHIANQEDEGVLAQIKRFITAHQYSRFASWDGPDRPLNMAGFRRVEKDPLTGEEHTLFFILPEGWREICRGFSPARAARLCQEAECLQPGSDGKYQSQVRLPEIGKTRVYRLTSRILSI
>NZ_CP040568.1|WP_000701821.1|1160207_1160423_-|AlpA-family-transcriptional-regulator
MKIRADSNDAFPESGNVRMRQVVQFLAMSESSVYRLIKDTDFPRPVHLSSRLVVFDAAEIRQWQQRRTVIR
>NZ_CP040568.1|WP_001161781.1|1160873_1161701_+|hypothetical-protein
MQGLTMDDISLSIARNMFHLQVYESDGVRFEDLFSKIMYYKSPDFQQVKPYGNIGDRKNDGFIKGQGVYYQVYAPEDASNNVLAAVNKIKDDFEGLRDYWHDICPIKKYYFVLNDKYKGSLPQLHKELIVLQSDFNLIDTGVIVAKDLERELFNLPDDMIRSVVGHLPDIDHEEYMFVSGFTCFISAWINFEKIARHKVFSAKQPNRPLFIGKVVNALVKNKIISRQDATFIKKITEVRNSLVHGVSMLVPKKNEIDMLIFITEKIKPAGVCRLD
>NZ_CP040568.1|WP_000248794.1|1162035_1163229_-|hypothetical-protein
MVNYPYFSVNVLSGSINFVENDKVKLGRNDKCWCKSGLKYKKCHLDRDREMPVSKAEALKFSKSNSQRKACYAPASMHEDCDKRIVQAHTLSKSSSLKAIADSSNHVMGVVMNLPSLIKNNGRWVPEKIGINQASTFTGFCAVHDRILFSCLENEKFTGTDEQCFALMFRSLSKEIYAKEGGRRSSDFAKNADKGKLQAEQVYIQEFVSLHQSGLNAAITELNNLKTSLDRILLNRQFSEIESVVFTFSEPLPIAVSSILSPERDFDGTKIQDLNDLTVSAEQVCFNAFSSEGKGYVVFSWLGTSAIIRRFVRSLIKVQTDRIFNTLLYFFFTKAENTYSSPEWWDSLSDKQRENIGNMIMSGVDFFDNSTLRVDHSVDYNSAALAEIRYSNSEISS
>NZ_CP040568.1|WP_010989063.1|1163618_1164212_-|hypothetical-protein
MPLLEARHLALLLLGLDASQPANALPEEHQENYRILHDAISRTIKATGMVSAPANKRMFYADEMFALAWRLIDDELTPSEVKDRSLKAVMKLSRNSRGRKWLKTLGDDALPDLTASTQPSLRGMHKRDKARENTARLCWLLVQLLVEETDGRYGTSDKPASDQILRKLKTLAKEQELPSDGLGRGTFYEVLKMEREK
>NZ_CP040568.1|WP_001542209.1|1164258_1164426_-|hypothetical-protein
MLAHQKEDEIEAAYNRSDYLEQRRPLMQWWGNYVDAARRQALLGAEEPLQIVEGE
>NZ_CP040568.1|WP_001542208.1|1164439_1165504_-|tyrosine-type-recombinase/integrase
MPNQLKPLTNVEIAGAKPRSTDYELRDGEGLYLLVKTSGRKAWHFEYYHPVTKKRTKTSLGPYPVVTLAMARETRTKYRRLLYQGIDPRQHLAGIAEEKRIQNECTLEKVAEQWLKEKKRTSDLSEDHAKDVWRSLEMHVFPSLGNTPVTEIRPKMLKEHLTPLEEQGILETLRRVISRLNEIFRFAISEELIEFNPADNLVARFKKPKKQNMPALHPSELGRLMLALQNASIRKETRCLIEWELLTWVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVLQIMEPVSRHRPWVFPSIRKPLEHMHQQTANAALIRMGFGGELVAHGMRSRQDRRRRSFSP
>NZ_CP040568.1|WP_000290918.1|1165831_1166842_-|tyrosine-type-recombinase/integrase
MAVRKIDSGEWLCDLRPTGVKGKRIRKKFATKGEALAYEKYIASEMEEKPWLGEKQDNRRLSELIEQWHDLYGRTLSDADRMMSKLKGICAGMGDPIAAQITSADFSQYREGRLKGEIPDVNGRLMPIQPQTVNHEQRNLSAVFGTLKKLGHWSLPNPLAGIPTFKVDEKMVSFLYPEEIKSLLQYLSESSSDSVLIITKICLATGARWSEAENLEGAQVTPYRITYKNTKNGRVRSIPISKELYDEIPKKRGRLFTPCRKTFERVVAKAGIELPDGQCTHVLRHTFASHFMMNGGNILVLKEILGHSDIKMTMIYAHFAPTHLEDAVLKNPLANL
>NZ_CP040568.1|WP_001047672.1|1166841_1167408_-|phage-repressor-protein-CI
MNLETGAREAIERICEVYGFTSRNQLAKHIGITNSSLGNRIMRDNFPADIAIRCALETGAALHWLVTGDGPKFDHAFSDTVRIPSYKFEGTKLVKTASFLFDKAMLPDHVGNPEIITEGNAKYLVDRADYPAADGKYLIEYSETQSIKELTLLPGNKLRIDWGKYPLDCEIGDVKIIGKVIMTMVVNT
>NZ_CP040568.1|WP_000204908.1|1167553_1167757_+|hypothetical-protein
MTSTVSTYSENRWVDLNTFCERSGVPLRRARYWYQNGRLKIKPKDKRGERVYVDWLAWTADQSPWVS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040568_2	2.26\|950046\|32\|NZ_CP040568\|CRISPRCasFinder,CRT	950046-950077	32	NZ_CP030204	Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence	130783-130814	2	0.938
NZ_CP040568_2	2.23\|950046\|35\|NZ_CP040568\|PILER-CR	950046-950080	35	NZ_CP030204	Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence	130780-130814	4	0.886
NZ_CP040568_2	2.8\|949131\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949131-949162	32	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	1387347-1387378	5	0.844
NZ_CP040568_2	2.8\|949131\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949131-949162	32	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	1461559-1461590	5	0.844
NZ_CP040568_2	2.8\|949131\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949131-949162	32	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	599340-599371	5	0.844
NZ_CP040568_2	2.8\|949131\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949131-949162	32	NC_012528	Deinococcus deserti VCD115 plasmid 3, complete sequence	121315-121346	6	0.812
NZ_CP040568_2	2.21\|949924\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949924-949955	32	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	850282-850313	6	0.812
NZ_CP040568_2	2.21\|949924\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949924-949955	32	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	887728-887759	6	0.812
NZ_CP040568_2	2.21\|949924\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949924-949955	32	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	856045-856076	6	0.812
NZ_CP040568_2	2.21\|949924\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949924-949955	32	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	835457-835488	6	0.812
NZ_CP040568_2	2.21\|949924\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949924-949955	32	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	953948-953979	6	0.812
NZ_CP040568_2	2.21\|949924\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949924-949955	32	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	431895-431926	6	0.812
NZ_CP040568_2	2.21\|949924\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949924-949955	32	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	843687-843718	6	0.812
NZ_CP040568_2	2.21\|949924\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949924-949955	32	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	833486-833517	6	0.812
NZ_CP040568_2	2.21\|949924\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949924-949955	32	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	457962-457993	6	0.812
NZ_CP040568_2	2.21\|949924\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949924-949955	32	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1502459-1502490	6	0.812
NZ_CP040568_2	2.21\|949924\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949924-949955	32	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	1188725-1188756	6	0.812
NZ_CP040568_2	2.21\|949924\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949924-949955	32	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	1094940-1094971	6	0.812
NZ_CP040568_2	2.21\|949924\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949924-949955	32	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	574071-574102	6	0.812
NZ_CP040568_2	2.21\|949924\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949924-949955	32	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	758103-758134	6	0.812
NZ_CP040568_2	2.21\|949924\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949924-949955	32	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	92938-92969	6	0.812
NZ_CP040568_2	2.21\|949924\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949924-949955	32	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1622461-1622492	6	0.812
NZ_CP040568_2	2.21\|949924\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949924-949955	32	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	174090-174121	6	0.812
NZ_CP040568_2	2.21\|949924\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949924-949955	32	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	996227-996258	6	0.812
NZ_CP040568_2	2.21\|949924\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949924-949955	32	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	856529-856560	6	0.812
NZ_CP040568_2	2.21\|949924\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949924-949955	32	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1026857-1026888	6	0.812
NZ_CP040568_2	2.21\|949924\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949924-949955	32	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	801217-801248	6	0.812
NZ_CP040568_2	2.21\|949924\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949924-949955	32	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	887731-887762	6	0.812
NZ_CP040568_2	2.8\|949131\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949131-949162	32	NZ_CP044078	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed1, complete sequence	135155-135186	7	0.781
NZ_CP040568_2	2.8\|949131\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949131-949162	32	NZ_CP031081	Paracoccus yeei strain CCUG 32053 plasmid pYEE3, complete sequence	195902-195933	7	0.781
NZ_CP040568_2	2.8\|949131\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949131-949162	32	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	581076-581107	7	0.781
NZ_CP040568_2	2.8\|949131\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949131-949162	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	122557-122588	7	0.781
NZ_CP040568_2	2.8\|949131\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949131-949162	32	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	529537-529568	7	0.781
NZ_CP040568_2	2.8\|949131\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949131-949162	32	NZ_CP034156	Rhodococcus sp. NJ-530 plasmid unnamed4, complete sequence	327444-327475	7	0.781
NZ_CP040568_2	2.13\|949436\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949436-949467	32	NC_011366	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence	208454-208485	7	0.781
NZ_CP040568_2	2.13\|949436\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949436-949467	32	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	449563-449594	7	0.781
NZ_CP040568_2	2.13\|949436\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949436-949467	32	NZ_CP035001	Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence	167100-167131	7	0.781
NZ_CP040568_2	2.21\|949924\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949924-949955	32	NZ_CP030829	Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence	360377-360408	7	0.781
NZ_CP040568_3	3.2\|966511\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	966511-966542	32	NZ_CP013929	Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence	188177-188208	7	0.781
NZ_CP040568_3	3.2\|966511\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	966511-966542	32	CP013931	Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence	192938-192969	7	0.781
NZ_CP040568_3	3.2\|966511\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	966511-966542	32	NC_019394	Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence	188204-188235	7	0.781
NZ_CP040568_2	2.6\|949009\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949009-949040	32	NZ_CP014942	Rhodococcus sp. BH4 plasmid, complete sequence	462005-462036	8	0.75
NZ_CP040568_2	2.16\|949619\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949619-949650	32	CP001770	Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence	145771-145802	8	0.75
NZ_CP040568_2	2.17\|949680\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949680-949711	32	LQ277707	Sequence 2 from Patent WO2016071503	12422-12453	8	0.75
NZ_CP040568_2	2.17\|949680\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949680-949711	32	LZ998055	JP 2017534684-A/2: Phage Therapy	12422-12453	8	0.75
NZ_CP040568_2	2.20\|949863\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949863-949894	32	NZ_CP028348	Novosphingobium sp. THN1 plasmid pTHN, complete sequence	1098771-1098802	8	0.75
NZ_CP040568_2	2.20\|949863\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949863-949894	32	NZ_CP014128	Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence	160189-160220	8	0.75
NZ_CP040568_2	2.20\|949863\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949863-949894	32	NC_014561	Pantoea vagans C9-1 plasmid pPag1, complete sequence	156443-156474	8	0.75
NZ_CP040568_2	2.20\|949863\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949863-949894	32	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	137983-138014	8	0.75
NZ_CP040568_2	2.21\|949924\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949924-949955	32	NC_012811	Methylorubrum extorquens AM1 megaplasmid, complete sequence	43093-43124	8	0.75
NZ_CP040568_2	2.21\|949924\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949924-949955	32	NZ_CP053442	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence	152052-152083	8	0.75
NZ_CP040568_3	3.3\|966572\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	966572-966603	32	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	8862-8893	8	0.75
NZ_CP040568_3	3.3\|966572\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	966572-966603	32	NZ_CP016476	Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence	151600-151631	8	0.75
NZ_CP040568_3	3.9\|966938\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	966938-966969	32	MN855803	Bacteriophage sp. isolate 108, partial genome	10057-10088	8	0.75
NZ_CP040568_2	2.9\|949192\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949192-949223	32	NZ_CP021372	Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence	353298-353329	9	0.719
NZ_CP040568_2	2.9\|949192\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949192-949223	32	AM749121	Streptococcus phage M102 complete genome	7893-7924	9	0.719
NZ_CP040568_2	2.9\|949192\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949192-949223	32	NC_012884	Streptococcus phage M102, complete genome	7893-7924	9	0.719
NZ_CP040568_2	2.12\|949375\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949375-949406	32	MN693046	Marine virus AFVG_25M413, complete genome	4323-4354	9	0.719
NZ_CP040568_2	2.12\|949375\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949375-949406	32	MN693008	Marine virus AFVG_117M9, complete genome	4316-4347	9	0.719
NZ_CP040568_2	2.13\|949436\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949436-949467	32	DQ674738	Aeromonas phage phiO18P, complete genome	15707-15738	9	0.719
NZ_CP040568_2	2.13\|949436\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949436-949467	32	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	380725-380756	9	0.719
NZ_CP040568_2	2.13\|949436\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949436-949467	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	153785-153816	9	0.719
NZ_CP040568_2	2.14\|949497\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949497-949528	32	MN694645	Marine virus AFVG_250M761, complete genome	31050-31081	9	0.719
NZ_CP040568_2	2.15\|949558\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949558-949589	32	MN062720	Microbacterium phage FuzzBuster, complete genome	19374-19405	9	0.719
NZ_CP040568_2	2.20\|949863\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949863-949894	32	NZ_CP045722	Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence	332-363	9	0.719
NZ_CP040568_2	2.20\|949863\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949863-949894	32	NZ_CP022519	Pantoea vagans strain FBS135 plasmid pPant3, complete sequence	62976-63007	9	0.719
NZ_CP040568_2	2.20\|949863\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949863-949894	32	NZ_CP028351	Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence	144976-145007	9	0.719
NZ_CP040568_2	2.10\|949253\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949253-949284	32	NZ_CP030264	Ensifer adhaerens strain Corn53 plasmid AB, complete sequence	1134787-1134818	10	0.688
NZ_CP040568_2	2.15\|949558\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949558-949589	32	NZ_CP019257	Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence	20006-20037	10	0.688
NZ_CP040568_2	2.15\|949558\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949558-949589	32	NZ_CP019274	Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence	9024-9055	10	0.688
NZ_CP040568_2	2.15\|949558\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949558-949589	32	NZ_CP019275	Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence	27130-27161	10	0.688
NZ_CP040568_2	2.15\|949558\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949558-949589	32	NZ_CP019279	Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence	19363-19394	10	0.688
NZ_CP040568_2	2.15\|949558\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949558-949589	32	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	23427-23458	10	0.688
NZ_CP040568_2	2.15\|949558\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949558-949589	32	NC_049342	Escherichia phage 500465-1, complete genome	24342-24373	10	0.688
NZ_CP040568_2	2.15\|949558\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949558-949589	32	KY271398	Klebsiella phage 4 LV-2017, complete genome	28240-28271	10	0.688
NZ_CP040568_2	2.15\|949558\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949558-949589	32	CP025900	Escherichia phage sp., complete genome	24342-24373	10	0.688
NZ_CP040568_2	2.29\|950229\|32\|NZ_CP040568\|CRISPRCasFinder,CRT	950229-950260	32	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	146919-146950	10	0.688
NZ_CP040568_3	3.10\|966999\|32\|NZ_CP040568\|CRISPRCasFinder,CRT	966999-967030	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1151729-1151760	10	0.688
NZ_CP040568_3	3.10\|966999\|32\|NZ_CP040568\|CRISPRCasFinder,CRT	966999-967030	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	661429-661460	10	0.688
NZ_CP040568_2	2.1\|948704\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	948704-948735	32	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	1885546-1885577	11	0.656
NZ_CP040568_2	2.1\|948704\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	948704-948735	32	NZ_HG938356	Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence	56201-56232	11	0.656
NZ_CP040568_2	2.1\|948704\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	948704-948735	32	NZ_CP040822	Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence	83399-83430	11	0.656
NZ_CP040568_2	2.1\|948704\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	948704-948735	32	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	1487158-1487189	11	0.656
NZ_CP040568_2	2.1\|948704\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	948704-948735	32	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	597699-597730	11	0.656
NZ_CP040568_2	2.13\|949436\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949436-949467	32	NZ_CP054036	Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence	234768-234799	11	0.656
NZ_CP040568_2	2.13\|949436\|32\|NZ_CP040568\|PILER-CR,CRISPRCasFinder,CRT	949436-949467	32	NZ_CP022568	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence	299431-299462	11	0.656

1. spacer 2.26|950046|32|NZ_CP040568|CRISPRCasFinder,CRT matches to NZ_CP030204 (Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence) position: , mismatch: 2, identity: 0.938

aaacgaaagaggctatgcggttgtttatcggt	CRISPR spacer
aaacgaaagaggccatgcgattgtttatcggt	Protospacer
*************.*****.************

2. spacer 2.23|950046|35|NZ_CP040568|PILER-CR matches to NZ_CP030204 (Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence) position: , mismatch: 4, identity: 0.886

tcgaaacgaaagaggctatgcggttgtttatcggt	CRISPR spacer
atgaaacgaaagaggccatgcgattgtttatcggt	Protospacer
 .**************.*****.************

3. spacer 2.8|949131|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

gatcgggtggtgccggtgggccatgtggcgct-	CRISPR spacer
gatcgggtggtgccgctggggcata-gccgctg	Protospacer
*************** **** ***. * ****

4. spacer 2.8|949131|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

gatcgggtggtgccggtgggccatgtggcgct-	CRISPR spacer
gatcgggtggtgccgctggggcata-gccgctg	Protospacer
*************** **** ***. * ****

5. spacer 2.8|949131|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

gatcgggtggtgccggtgggccatgtggcgct-	CRISPR spacer
gatcgggtggtgccgctggggcata-gccgctg	Protospacer
*************** **** ***. * ****

6. spacer 2.8|949131|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NC_012528 (Deinococcus deserti VCD115 plasmid 3, complete sequence) position: , mismatch: 6, identity: 0.812

gatcgggtggtgccggtgggccatgtggcgct--	CRISPR spacer
ggtcgggtggtgcgggtcggcca--tggcgttgg	Protospacer
*.*********** *** *****  *****.*

7. spacer 2.21|949924|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

8. spacer 2.21|949924|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

9. spacer 2.21|949924|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

10. spacer 2.21|949924|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

11. spacer 2.21|949924|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

12. spacer 2.21|949924|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

13. spacer 2.21|949924|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

14. spacer 2.21|949924|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

15. spacer 2.21|949924|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

16. spacer 2.21|949924|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

17. spacer 2.21|949924|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

18. spacer 2.21|949924|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

19. spacer 2.21|949924|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

20. spacer 2.21|949924|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

21. spacer 2.21|949924|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

22. spacer 2.21|949924|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

23. spacer 2.21|949924|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

24. spacer 2.21|949924|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

25. spacer 2.21|949924|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

26. spacer 2.21|949924|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

27. spacer 2.21|949924|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

28. spacer 2.21|949924|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacggtgacgtcagtgccgaa--ggcgaaata	CRISPR spacer
atgacggtgacgtcggagccgaagcggcggaa--	Protospacer
 *************.* ******  ****.**

29. spacer 2.8|949131|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044078 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

gatcg--ggtggtgccggtgggccatgtggcgct	CRISPR spacer
--ccgacgctggtggcggtgggccatgtggcggc	Protospacer
  .**  * ***** ***************** .

30. spacer 2.8|949131|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031081 (Paracoccus yeei strain CCUG 32053 plasmid pYEE3, complete sequence) position: , mismatch: 7, identity: 0.781

gatcg--ggtggtgccggtgggccatgtggcgct	CRISPR spacer
--ccgacgctggtggcggtgggccatgtggcggc	Protospacer
  .**  * ***** ***************** .

31. spacer 2.8|949131|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

gatcg-ggtggtgccggtgggccatgtggcgct	CRISPR spacer
-atggcgatggagccgctgggccatgtggcggg	Protospacer
 ** * *.*** **** **************

32. spacer 2.8|949131|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.781

gatcg-ggtggtgccggtgggccatgtggcgct	CRISPR spacer
-atggcgatggagccgctgggccatgtggcggg	Protospacer
 ** * *.*** **** **************

33. spacer 2.8|949131|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

gatcg-ggtggtgccggtgggccatgtggcgct	CRISPR spacer
-atggcgatggagccgctgggccatgtggcggg	Protospacer
 ** * *.*** **** **************

34. spacer 2.8|949131|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034156 (Rhodococcus sp. NJ-530 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.781

gatcgggtggtgccggtgggccatgtggcgct	CRISPR spacer
gctagtgccgtgccggtgcgccatgtggggct	Protospacer
* * * *. ********* ********* ***

35. spacer 2.13|949436|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NC_011366 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc---	CRISPR spacer
tcggcaccagcgccgatccggtca---tgctcgaa	Protospacer
.*****.************* ***   ***.*

36. spacer 2.13|949436|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatcaccgccgatcctttcaccgccgcc	Protospacer
********* ********* ****. *.  **

37. spacer 2.13|949436|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc---	CRISPR spacer
tcggcaccagcgccgatccggtca---tgctcgaa	Protospacer
.*****.************* ***   ***.*

38. spacer 2.21|949924|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030829 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence) position: , mismatch: 7, identity: 0.781

ttgacggtgacgtcagtgccgaaggcgaaata	CRISPR spacer
tcttcggtgacgacattgccgaaggcgacgta	Protospacer
*.  ******** ** ************ .**

39. spacer 3.2|966511|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013929 (Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence) position: , mismatch: 7, identity: 0.781

agccgtttccgctaaatacccc--cgcagtgatt	CRISPR spacer
ccccgatttcgctaaatacccccgcgcagcga--	Protospacer
  *** **.*************  *****.**

40. spacer 3.2|966511|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to CP013931 (Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence) position: , mismatch: 7, identity: 0.781

agccgtttccgctaaatacccc--cgcagtgatt	CRISPR spacer
ccccgatttcgctaaatacccccgcgcagcga--	Protospacer
  *** **.*************  *****.**

41. spacer 3.2|966511|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NC_019394 (Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence) position: , mismatch: 7, identity: 0.781

agccgtttccgctaaatacccc--cgcagtgatt	CRISPR spacer
ccccgatttcgctaaatacccccgcgcagcga--	Protospacer
  *** **.*************  *****.**

42. spacer 2.6|949009|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

ttccagaaccgtttgacttactgtggccatta	CRISPR spacer
ctgccgaaccgtgtgccttactgtggccaccg	Protospacer
.* * ******* ** *************...

43. spacer 2.16|949619|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to CP001770 (Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence) position: , mismatch: 8, identity: 0.75

cggaggatggaatatttccgaggctggcgatt	CRISPR spacer
tgggagatggaatacttccggggctggcaacc	Protospacer
.**..*********.*****.*******.*..

44. spacer 2.17|949680|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to LQ277707 (Sequence 2 from Patent WO2016071503) position: , mismatch: 8, identity: 0.75

atgccggaacgctgatggcgtttgacatgagc----	CRISPR spacer
ttgccggaacgctattggcgtttg----cagccttt	Protospacer
 ************. *********     ***

45. spacer 2.17|949680|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to LZ998055 (JP 2017534684-A/2: Phage Therapy) position: , mismatch: 8, identity: 0.75

atgccggaacgctgatggcgtttgacatgagc----	CRISPR spacer
ttgccggaacgctattggcgtttg----cagccttt	Protospacer
 ************. *********     ***

46. spacer 2.20|949863|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 8, identity: 0.75

tgacgctggtctataccggcaacgaacgcgac-	CRISPR spacer
atacgctggtctataccggcaa-ggatccgctg	Protospacer
  ******************** *.*. ** .

47. spacer 2.20|949863|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014128 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacactggtctacaccggcaacgtaaaattc	Protospacer
****.********.********** * .   *

48. spacer 2.20|949863|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NC_014561 (Pantoea vagans C9-1 plasmid pPag1, complete sequence) position: , mismatch: 8, identity: 0.75

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacactggtctacaccggcaacgtaaaattc	Protospacer
****.********.********** * .   *

49. spacer 2.20|949863|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 8, identity: 0.75

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
ggacgctgttcaataccggcaacgtccggatc	Protospacer
 ******* ** ************  ** . *

50. spacer 2.21|949924|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

ttgacggtgacgtcagtgccgaaggcgaaata	CRISPR spacer
tcgacggtgacgtccgtgacgaaggtgttcga	Protospacer
*.************ *** ******.*    *

51. spacer 2.21|949924|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053442 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence) position: , mismatch: 8, identity: 0.75

ttgacggtgacgtcagtgccgaaggcgaaata	CRISPR spacer
ttctggtggacgtccgtgccgaaggcgcaatg	Protospacer
**   *  ****** ************ ***.

52. spacer 3.3|966572|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.75

ttcttgaatatgattgcgggtatatgtggata	CRISPR spacer
ctcttgaatatgattgcgggtttagatttacc	Protospacer
.******************** ** .*  *.

53. spacer 3.3|966572|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016476 (Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

ttcttgaatatgattgcgggtatatgtggata	CRISPR spacer
ctcttgaatatgattgcgggtttagatttacc	Protospacer
.******************** ** .*  *.

54. spacer 3.9|966938|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 8, identity: 0.75

ggttaaccaggggtttttccccactatttcgc	CRISPR spacer
aggtaacgaggggtttttccccaatattgaaa	Protospacer
.* **** *************** ****  .

55. spacer 2.9|949192|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021372 (Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence) position: , mismatch: 9, identity: 0.719

gcagcggttgagtaactcctcgtccacgtcga	CRISPR spacer
ggtgcgggtgaggaactcctcgtccactgaac	Protospacer
*  **** **** **************   .

56. spacer 2.9|949192|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to AM749121 (Streptococcus phage M102 complete genome) position: , mismatch: 9, identity: 0.719

gcagcggttgagtaactcctcgtccacgtcga	CRISPR spacer
aaggcggtggagtaactcctggtccagcccaa	Protospacer
. .***** *********** *****  .*.*

57. spacer 2.9|949192|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NC_012884 (Streptococcus phage M102, complete genome) position: , mismatch: 9, identity: 0.719

gcagcggttgagtaactcctcgtccacgtcga	CRISPR spacer
aaggcggtggagtaactcctggtccagcccaa	Protospacer
. .***** *********** *****  .*.*

58. spacer 2.12|949375|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to MN693046 (Marine virus AFVG_25M413, complete genome) position: , mismatch: 9, identity: 0.719

gcgaggtcaataaaaaatggtgtggctttacc	CRISPR spacer
ttagggtcaacaaaaaatggtgtggtttcaga	Protospacer
 ...******.**************.**.*

59. spacer 2.12|949375|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to MN693008 (Marine virus AFVG_117M9, complete genome) position: , mismatch: 9, identity: 0.719

gcgaggtcaataaaaaatggtgtggctttacc	CRISPR spacer
ttagggtcaacaaaaaatggtgtggtttcaga	Protospacer
 ...******.**************.**.*

60. spacer 2.13|949436|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to DQ674738 (Aeromonas phage phiO18P, complete genome) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatcagcgccgagcagttcagcaaactg	Protospacer
**************** * *****  . .*.

61. spacer 2.13|949436|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
gcggcatcagcgccgaccggttcaccgtcagg	Protospacer
 ***************.* *****. **

62. spacer 2.13|949436|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatgagcgccgatcagttcgacgccctg	Protospacer
******* ********** ****.  *. *.

63. spacer 2.14|949497|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to MN694645 (Marine virus AFVG_250M761, complete genome) position: , mismatch: 9, identity: 0.719

aacaggaacaggaaaaaaaagatttgtccggt	CRISPR spacer
tacagtaacaggaaaaaaaggattaatgatgc	Protospacer
 **** *************.**** .*   *.

64. spacer 2.15|949558|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to MN062720 (Microbacterium phage FuzzBuster, complete genome) position: , mismatch: 9, identity: 0.719

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaacggtcagcctgtccaggagga	Protospacer
****** *********** ****..**

65. spacer 2.20|949863|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045722 (Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacgctgatctataccggcaacgtcaagttt	Protospacer
********.***************   .   .

66. spacer 2.20|949863|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022519 (Pantoea vagans strain FBS135 plasmid pPant3, complete sequence) position: , mismatch: 9, identity: 0.719

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacgctgatctataccggcaacgtcaagttt	Protospacer
********.***************   .   .

67. spacer 2.20|949863|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028351 (Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence) position: , mismatch: 9, identity: 0.719

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacactggtctacaccggcaacgtaaaattt	Protospacer
****.********.********** * .   .

68. spacer 2.10|949253|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 10, identity: 0.688

ctccagcgctcgaatttatttgaggccaccac	CRISPR spacer
gaacaccgcgcgaatttatttgaggcaagttt	Protospacer
   ** *** **************** * . .

69. spacer 2.15|949558|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019257 (Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

70. spacer 2.15|949558|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019274 (Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

71. spacer 2.15|949558|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019275 (Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

72. spacer 2.15|949558|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019279 (Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

73. spacer 2.15|949558|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

74. spacer 2.15|949558|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NC_049342 (Escherichia phage 500465-1, complete genome) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

75. spacer 2.15|949558|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to KY271398 (Klebsiella phage 4 LV-2017, complete genome) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

76. spacer 2.15|949558|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to CP025900 (Escherichia phage sp., complete genome) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

77. spacer 2.29|950229|32|NZ_CP040568|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cgttcatcggcagcgtcacgcaatatgaagat	CRISPR spacer
acatcatcggcatcgtcacgccatatccggca	Protospacer
   ********* ******** ****  .*

78. spacer 3.10|966999|32|NZ_CP040568|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

79. spacer 3.10|966999|32|NZ_CP040568|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

80. spacer 2.1|948704|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 11, identity: 0.656

tttgccgatccccttccagaccaccctttaca	CRISPR spacer
cgacgagatcgccttccagaccaaccttttgg	Protospacer
.     **** ************ *****  .

81. spacer 2.1|948704|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 11, identity: 0.656

tttgccgatccccttccagaccaccctttaca	CRISPR spacer
cgacgagatcgccttccagaccaaccttttgg	Protospacer
.     **** ************ *****  .

82. spacer 2.1|948704|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040822 (Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence) position: , mismatch: 11, identity: 0.656

tttgccgatccccttccagaccaccctttaca	CRISPR spacer
cgactcgatcgccttccagaccaaccttctgg	Protospacer
.   .***** ************ ****.  .

83. spacer 2.1|948704|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 11, identity: 0.656

tttgccgatccccttccagaccaccctttaca	CRISPR spacer
cgacgagatcgccttccagaccaaccttttgg	Protospacer
.     **** ************ *****  .

84. spacer 2.1|948704|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 11, identity: 0.656

tttgccgatccccttccagaccaccctttaca	CRISPR spacer
cgacgagatcgccttccagaccaaccttttgg	Protospacer
.     **** ************ *****  .

85. spacer 2.13|949436|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054036 (Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence) position: , mismatch: 11, identity: 0.656

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ttccgatcagcgccgatccgctcctagtctat	Protospacer
..   ***************.** **** . .

86. spacer 2.13|949436|32|NZ_CP040568|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 11, identity: 0.656

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ttccgatcagcgccgatccgctcctagtctat	Protospacer
..   ***************.** **** . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1131829 : 1226396

Cronobacter_phage(67.44%)

head,terminase,portal,holin,transposase,tRNA,tail,integrase,capsid

attL 1165669:1165715|attR 1197345:1197391

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085983317.1\|1131829_1132992_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	5.2e-51	41.9
WP_000073810.1\|1133270_1135253_+	ATP-binding domain-containing protein	NA	NA	NA	NA
WP_000061088.1\|1135249_1135888_+	hypothetical protein	NA	NA	NA	NA
WP_001682341.1\|1137601_1138198_-\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A1B5FPC6	Escherichia_phage	2.6e-99	91.3
WP_010989066.1\|1138775_1140059_+	membrane protein	NA	NA	NA	NA
WP_001521074.1\|1140318_1142193_-	membrane protein	NA	NA	NA	NA
WP_000088556.1\|1142358_1143234_-\|integrase	integrase	NA	NA	NA	NA
WP_000021514.1\|1144350_1146030_-	SgrR family transcriptional regulator	NA	NA	NA	NA
WP_000819716.1\|1146252_1147794_+	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_000811366.1\|1147923_1148766_+	hypothetical protein	NA	NA	NA	NA
WP_001682344.1\|1148765_1149329_+	6-phospho-3-hexuloisomerase	NA	NA	NA	NA
WP_000776032.1\|1149352_1149988_+	3-hexulose-6-phosphate synthase	NA	NA	NA	NA
WP_022742808.1\|1151557_1152571_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_001098984.1\|1152581_1153562_-	PTS glucitol/sorbitol transporter subunit IIB	NA	NA	NA	NA
WP_000973738.1\|1153558_1153933_-	PTS glucitol/sorbitol transporter subunit IIA	NA	NA	NA	NA
WP_000480483.1\|1153929_1154451_-	PTS sorbitol transporter subunit IIC	NA	NA	NA	NA
WP_000749979.1\|1154563_1154848_-	transcriptional regulator	A0A2I7S995	Vibrio_phage	5.4e-18	64.7
WP_010989065.1\|1154942_1155299_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010989064.1\|1155452_1156271_-	DUF4435 domain-containing protein	NA	NA	NA	NA
WP_001520307.1\|1158102_1160172_-	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	1.7e-73	35.1
WP_000701821.1\|1160207_1160423_-	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_001161781.1\|1160873_1161701_+	hypothetical protein	NA	NA	NA	NA
WP_000248794.1\|1162035_1163229_-	hypothetical protein	NA	NA	NA	NA
WP_010989063.1\|1163618_1164212_-	hypothetical protein	NA	NA	NA	NA
WP_001542209.1\|1164258_1164426_-	hypothetical protein	A0A1B5FPC6	Escherichia_phage	1.1e-07	61.9
WP_001542208.1\|1164439_1165504_-\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	1.6e-118	62.5
1165669:1165715	attL	NA	NA	NA	NA
WP_000290918.1\|1165831_1166842_-\|integrase	tyrosine-type recombinase/integrase	F1BUN9	Cronobacter_phage	9.5e-174	85.7
WP_001047672.1\|1166841_1167408_-	phage repressor protein CI	F1BUN8	Cronobacter_phage	1.1e-65	59.7
WP_000204908.1\|1167553_1167757_+	hypothetical protein	F1BUN7	Cronobacter_phage	1.0e-10	52.0
WP_000460879.1\|1167794_1168298_+	hypothetical protein	F1BUN6	Cronobacter_phage	1.5e-58	71.3
WP_000643375.1\|1168307_1168535_+	DUF2724 domain-containing protein	NA	NA	NA	NA
WP_000996734.1\|1168524_1168950_+	hypothetical protein	F1BUN5	Cronobacter_phage	2.2e-23	49.6
WP_000022786.1\|1168949_1169351_+	hypothetical protein	F1BUN2	Cronobacter_phage	1.4e-48	66.9
WP_000057335.1\|1169418_1169649_+	DUF2732 family protein	NA	NA	NA	NA
WP_000985848.1\|1169639_1169969_+	DUF3850 domain-containing protein	Q2P9X4	Enterobacteria_phage	2.0e-11	45.2
WP_000279398.1\|1169958_1170792_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	F1BUN1	Cronobacter_phage	1.6e-105	68.3
WP_000171003.1\|1170788_1172810_+	replication endonuclease	F1BUM9	Cronobacter_phage	1.9e-298	74.9
WP_000960961.1\|1172922_1173141_+	hypothetical protein	E5G6M0	Salmonella_phage	3.6e-06	49.1
WP_001669965.1\|1173114_1173438_-	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	8.0e-50	92.3
WP_000038205.1\|1173434_1174496_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	6.0e-163	77.1
WP_001151940.1\|1174492_1176268_-	hypothetical protein	F1BUM5	Cronobacter_phage	7.0e-289	82.6
WP_000018802.1\|1176428_1177232_+\|capsid	phage capsid scaffolding protein	F1BUM4	Cronobacter_phage	4.1e-79	56.4
WP_000550496.1\|1177293_1178316_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	1.1e-158	81.2
WP_001218537.1\|1178319_1179021_+\|terminase	terminase	F1BUM0	Cronobacter_phage	9.4e-88	66.8
WP_000447489.1\|1179081_1179570_+\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	5.0e-64	82.0
WP_000084220.1\|1179566_1180073_+\|tail	phage tail protein	F1BUL7	Cronobacter_phage	5.2e-64	69.8
WP_000560083.1\|1180069_1180777_+	hypothetical protein	F1BUL6	Cronobacter_phage	6.8e-102	76.9
WP_000220203.1\|1180773_1181901_+	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	1.9e-175	83.7
WP_000166743.1\|1181897_1182353_+	DUF2597 family protein	F1BUL4	Cronobacter_phage	1.5e-57	72.2
WP_001154425.1\|1182362_1182656_+\|holin	holin	C7BGD7	Burkholderia_phage	1.3e-14	46.2
WP_000175560.1\|1182652_1182994_+	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	2.2e-50	91.1
WP_000376370.1\|1182993_1183326_+	hypothetical protein	F1BUL2	Cronobacter_phage	6.7e-36	70.9
WP_001270303.1\|1183297_1183486_+	hypothetical protein	F1BUL1	Cronobacter_phage	1.1e-22	80.6
WP_000411339.1\|1183472_1183730_+	hypothetical protein	A5X9I7	Aeromonas_virus	3.6e-21	63.4
WP_079792143.1\|1183917_1185888_+\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	1.4e-250	66.3
WP_001002797.1\|1185884_1186214_+	DUF2590 family protein	F1BUK8	Cronobacter_phage	3.8e-39	72.4
WP_000136921.1\|1186210_1187395_+	hypothetical protein	F1BUK6	Cronobacter_phage	6.7e-179	78.4
WP_001001823.1\|1187387_1187975_+	hypothetical protein	F1BUK5	Cronobacter_phage	8.4e-90	82.1
WP_000084299.1\|1187984_1190090_+\|tail	tail protein	S4TP62	Salmonella_phage	8.8e-198	69.0
WP_072209005.1\|1190198_1190657_+\|tail	tail fiber assembly protein	S4TUB9	Salmonella_phage	1.6e-75	93.2
WP_000267955.1\|1190646_1191372_+	hypothetical protein	F1BUK1	Cronobacter_phage	5.5e-67	56.0
WP_000200789.1\|1191343_1191889_+	hypothetical protein	F1BUJ9	Cronobacter_phage	3.2e-59	72.0
WP_024131633.1\|1191891_1193592_+	hypothetical protein	F1BUJ7	Cronobacter_phage	3.7e-223	81.3
WP_000136561.1\|1194272_1195391_+	DUF4935 domain-containing protein	NA	NA	NA	NA
WP_001177838.1\|1197016_1197265_-	hypothetical protein	NA	NA	NA	NA
WP_010989057.1\|1197780_1198944_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
1197345:1197391	attR	NA	NA	NA	NA
WP_000196159.1\|1198951_1201132_-	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	1.3e-18	34.0
WP_000533858.1\|1201128_1202538_-	TolC family outer membrane protein	NA	NA	NA	NA
WP_022742806.1\|1202602_1214077_-	biofilm-associated protein BapA	NA	NA	NA	NA
WP_001518569.1\|1214690_1215173_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
WP_000242603.1\|1215322_1215799_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_001112990.1\|1215788_1216079_+	RnfH family protein	NA	NA	NA	NA
WP_001203445.1\|1216244_1216583_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_000880965.1\|1216731_1218393_-	DNA repair protein RecN	NA	NA	NA	NA
WP_001059155.1\|1218478_1219357_-	NAD(+) kinase	NA	NA	NA	NA
WP_001518875.1\|1219479_1220070_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_022742805.1\|1220104_1220710_-	hypothetical protein	NA	NA	NA	NA
WP_127172650.1\|1220830_1222117_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001537507.1\|1222136_1222928_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_000460052.1\|1223093_1224455_+	signal recognition particle protein	NA	NA	NA	NA
WP_000256453.1\|1224768_1225017_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_000043266.1\|1225035_1225584_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000469804.1\|1225628_1226396_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_2

1253205 : 1358768

112

Salmonella_phage(35.0%)

head,lysis,terminase,portal,holin,tRNA,transposase,tail,integrase,capsid

attL 1245286:1245302|attR 1334208:1334224

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1245286:1245302	attL	NA	NA	NA	NA
WP_000997368.1\|1253205_1254243_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_000179978.1\|1254358_1255048_-	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	4.6e-55	49.5
WP_000627811.1\|1255366_1255750_+	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	6.1e-33	74.0
WP_000188414.1\|1255811_1256399_-	cysteine/O-acetylserine transporter	NA	NA	NA	NA
WP_001526875.1\|1256501_1257401_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000219174.1\|1257418_1258753_-	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.6e-43	29.7
WP_000083343.1\|1258883_1259621_+\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA
WP_022742804.1\|1259605_1261228_-	L-aspartate oxidase	NA	NA	NA	NA
WP_001521719.1\|1261312_1261492_+	hypothetical protein	NA	NA	NA	NA
WP_014344135.1\|1261491_1261656_+	rpoE leader peptide RseD	NA	NA	NA	NA
WP_000003307.1\|1261652_1262228_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
WP_001168374.1\|1262259_1262910_+	anti-sigma-E factor RseA	NA	NA	NA	NA
WP_000812017.1\|1262909_1263866_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
WP_000589087.1\|1263862_1264342_+	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_022742803.1\|1264839_1266069_+\|integrase	site-specific integrase	H6WRW7	Salmonella_phage	5.4e-232	93.9
WP_001670787.1\|1266046_1266331_-	excisionase Xis	H6WRW8	Salmonella_phage	3.1e-42	86.2
WP_001237031.1\|1266371_1266611_-	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_022742802.1\|1266653_1267811_-	recombinase RecT	S4TTE8	Salmonella_phage	4.7e-217	99.7
WP_031609046.1\|1267773_1270701_-	exodeoxyribonuclease	H6WRX1	Salmonella_phage	0.0e+00	99.0
WP_001668146.1\|1270827_1271127_-	hypothetical protein	S4TSN6	Salmonella_phage	8.1e-49	84.5
WP_000917564.1\|1271148_1271307_-	hypothetical protein	H6WRX3	Salmonella_phage	1.2e-22	98.1
WP_001020640.1\|1271660_1272356_-	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	4.6e-127	99.6
WP_071529734.1\|1272329_1272515_+	hypothetical protein	NA	NA	NA	NA
WP_001191666.1\|1272453_1272678_+	helix-turn-helix transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
WP_023139406.1\|1272706_1273261_+	hypothetical protein	A0A1C9II13	Salmonella_phage	1.2e-101	99.5
WP_031609052.1\|1273257_1274400_+	peptidase	A0A1C9IHV9	Salmonella_phage	1.0e-208	98.2
WP_000620702.1\|1274396_1274621_+	hypothetical protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
WP_022742797.1\|1274617_1275577_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	1.2e-117	80.9
WP_024150662.1\|1275578_1276061_+	PerC family transcriptional regulator	Q8HA95	Salmonella_phage	1.8e-85	97.5
WP_000767086.1\|1276949_1277339_+	RusA family crossover junction endodeoxyribonuclease	A0A192Y8N5	Salmonella_phage	1.6e-68	97.7
WP_024150661.1\|1277355_1278216_+	KilA-N domain-containing protein	Q8HA92	Salmonella_phage	9.2e-162	99.3
WP_050196634.1\|1278223_1279213_+	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	3.5e-189	97.3
WP_022742791.1\|1279227_1279806_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.1e-49	57.2
WP_022742790.1\|1280006_1280732_+	hypothetical protein	A0A0U2KD26	Escherichia_phage	4.0e-81	66.2
WP_024150660.1\|1280864_1281290_+	subtilase	NA	NA	NA	NA
WP_071786602.1\|1281570_1281762_-	hypothetical protein	NA	NA	NA	NA
WP_023221874.1\|1281816_1282005_+	hypothetical protein	NA	NA	NA	NA
WP_001294873.1\|1282094_1282484_+	membrane protein	K7PHB9	Enterobacterial_phage	4.8e-41	72.5
WP_021000643.1\|1282470_1282752_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.6e-36	80.6
WP_022742788.1\|1282751_1283366_+	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	2.2e-109	93.6
WP_050955063.1\|1283398_1283845_+\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	9.3e-57	83.9
WP_031603581.1\|1284172_1284676_+	hypothetical protein	NA	NA	NA	NA
WP_000669689.1\|1284932_1285334_-	hypothetical protein	NA	NA	NA	NA
WP_001102153.1\|1285619_1286165_+\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
WP_000623088.1\|1286136_1288068_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	1.3e-259	65.9
WP_000201415.1\|1288051_1288255_+\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	1.9e-17	73.8
WP_000831821.1\|1288251_1289832_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	9.6e-189	62.8
WP_001189498.1\|1289821_1291318_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	1.1e-96	52.2
WP_000011260.1\|1291330_1291678_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
WP_022742784.1\|1291732_1292761_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.3e-114	61.1
WP_000201485.1\|1292818_1293184_+	DNA packaging protein	NA	NA	NA	NA
WP_000083293.1\|1293194_1293572_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	1.5e-28	55.6
WP_000677089.1\|1293558_1294137_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
WP_022742782.1\|1294133_1294535_+	hypothetical protein	Q9G0F3	Phage_Gifsy-1	4.0e-51	99.0
WP_000971953.1\|1294542_1295289_+\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
WP_000479607.1\|1295339_1295735_+\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
WP_010989052.1\|1295731_1296070_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
WP_022742781.1\|1296041_1299137_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	1.1e-276	61.6
WP_000447369.1\|1299139_1299469_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.3e-42	70.4
WP_001152689.1\|1299478_1300177_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	5.5e-104	76.3
WP_000662739.1\|1300183_1300921_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.2e-129	85.0
WP_000246126.1\|1300818_1301466_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.1e-89	77.7
WP_000514917.1\|1301527_1304890_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	79.7
WP_000178853.1\|1304928_1305171_+	hypothetical protein	NA	NA	NA	NA
WP_022742779.1\|1305224_1307597_+	hypothetical protein	A0A0K2FIZ6	Escherichia_phage	2.0e-89	65.4
WP_000593433.1\|1307593_1308418_+\|tail	tail protein	A0A0M4QWS3	Salmonella_phage	1.2e-145	92.0
WP_000143154.1\|1308407_1308986_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.6e-93	88.9
WP_010989049.1\|1309082_1309310_-	PagK-like protein	NA	NA	NA	NA
WP_001738443.1\|1309416_1309629_+	helix-turn-helix domain-containing protein	S4TTF2	Salmonella_phage	3.8e-08	90.6
WP_015701342.1\|1309691_1309757_+	DUF4113 domain-containing protein	NA	NA	NA	NA
WP_015589559.1\|1310336_1310501_+\|transposase	transposase	NA	NA	NA	NA
WP_001542312.1\|1311213_1311351_-	hypothetical protein	NA	NA	NA	NA
WP_010989047.1\|1311883_1313377_-	type III secretion effector GogB	Q9MBM1	Phage_Gifsy-1	3.4e-260	100.0
WP_000790154.1\|1313781_1315581_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	7.2e-23	24.9
WP_000002559.1\|1315597_1316572_+	signal peptidase I	NA	NA	NA	NA
WP_001068341.1\|1316845_1317526_+	ribonuclease III	A0A2K9L5P0	Tupanvirus	7.4e-21	31.8
WP_000102232.1\|1317522_1318428_+	GTPase Era	NA	NA	NA	NA
WP_000399380.1\|1318439_1319168_+	DNA repair protein RecO	NA	NA	NA	NA
WP_000818972.1\|1319179_1319911_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_000986043.1\|1319910_1320291_+	holo-ACP synthase	NA	NA	NA	NA
WP_001196290.1\|1320402_1320663_-	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	1.4e-17	52.3
WP_001022463.1\|1320700_1321627_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	3.0e-09	24.4
WP_001276365.1\|1321742_1322939_+	OFA family MFS transporter	NA	NA	NA	NA
WP_000684022.1\|1322960_1323878_+	oxidoreductase	NA	NA	NA	NA
WP_000995703.1\|1323916_1324765_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_001048530.1\|1324880_1325774_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_000361663.1\|1325784_1327146_+	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_000253558.1\|1327149_1327785_+	phosphatidylglycerophosphatase C	NA	NA	NA	NA
WP_001134566.1\|1327809_1328361_+\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
WP_000734248.1\|1328411_1329956_-	membrane-bound lytic murein transglycosylase MltF	NA	NA	NA	NA
WP_001747289.1\|1329956_1330190_-	hypothetical protein	NA	NA	NA	NA
WP_000970045.1\|1330211_1334099_+	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	1.4e-127	57.6
WP_001670672.1\|1334748_1336179_+	two component system sensor histidine kinase QseE/GlrK	W8CYF6	Bacillus_phage	2.0e-15	26.1
1334208:1334224	attR	NA	NA	NA	NA
WP_001054236.1\|1336180_1336945_+	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA
WP_000625591.1\|1336941_1338279_+	two-component system response regulator GlrR	W8CYM9	Bacillus_phage	1.8e-10	29.2
WP_000717694.1\|1338355_1338694_+	nitrogen regulatory protein P-II	NA	NA	NA	NA
WP_000856793.1\|1338742_1340203_-	MFS transporter	A0A0P0IY73	Acinetobacter_phage	1.7e-46	28.8
WP_001100652.1\|1340258_1342403_-	lysine decarboxylase CadA	NA	NA	NA	NA
WP_000100008.1\|1342485_1343817_-	cadaverine/lysine antiporter	NA	NA	NA	NA
WP_001187150.1\|1344177_1345722_-	CadC family transcriptional regulator	NA	NA	NA	NA
WP_000883146.1\|1345903_1347094_-	NO-inducible flavohemoprotein	NA	NA	NA	NA
WP_000919178.1\|1347418_1348672_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.3e-100	53.0
WP_001173729.1\|1348867_1350007_+	3-phenylpropionate MFS transporter	NA	NA	NA	NA
WP_000982961.1\|1350001_1351279_-	stationary phase inducible protein CsiE	NA	NA	NA	NA
WP_000805728.1\|1351404_1352043_+	DUF1007 family protein	NA	NA	NA	NA
WP_000111027.1\|1352033_1353020_+	nickel/cobalt transporter	NA	NA	NA	NA
WP_000020685.1\|1353020_1354034_-	sulfite reductase subunit C	NA	NA	NA	NA
WP_000017587.1\|1354044_1354863_-	anaerobic sulfite reductase subunit B	NA	NA	NA	NA
WP_000985204.1\|1354866_1355910_-	anaerobic sulfite reductase subunit A	NA	NA	NA	NA
WP_000174944.1\|1356091_1356970_-	alpha/beta hydrolase	A0A1C9C5K3	Heterosigma_akashiwo_virus	3.5e-15	24.7
WP_000553467.1\|1357114_1357918_-	inositol-1-monophosphatase	NA	NA	NA	NA
WP_000940032.1\|1358036_1358768_+\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA

DBSCAN-SWA_3

1682511 : 1712097

Salmonella_phage(33.33%)

tail,holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000781589.1\|1682511_1683006_-\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_000228070.1\|1683419_1683911_+	ferredoxin-type protein NapF	NA	NA	NA	NA
WP_001260058.1\|1683900_1684164_+	chaperone NapD	NA	NA	NA	NA
WP_000778097.1\|1684160_1686647_+	nitrate reductase catalytic subunit NapA	NA	NA	NA	NA
WP_000091673.1\|1686653_1687349_+	ferredoxin-type protein NapG	NA	NA	NA	NA
WP_000013529.1\|1687335_1688205_+	quinol dehydrogenase ferredoxin subunit NapH	NA	NA	NA	NA
WP_000835182.1\|1688320_1688770_+	nitrate reductase cytochrome c-type subunit	NA	NA	NA	NA
WP_000431778.1\|1688779_1689382_+	cytochrome c-type protein NapC	NA	NA	NA	NA
WP_000888541.1\|1689402_1690020_+	cytochrome c biogenesis heme-transporting ATPase CcmA	A0A2H4PQG7	Staphylococcus_phage	2.2e-11	27.2
WP_000990028.1\|1690016_1690676_+	heme exporter protein CcmB	NA	NA	NA	NA
WP_000266008.1\|1690727_1691465_+	heme ABC transporter permease	NA	NA	NA	NA
WP_000074110.1\|1691461_1691674_+	heme exporter protein CcmD	NA	NA	NA	NA
WP_001053618.1\|1691670_1692150_+	cytochrome c maturation protein CcmE	NA	NA	NA	NA
WP_000982518.1\|1692146_1694078_+	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_000828296.1\|1694074_1694632_+	thiol:disulfide interchange protein DsbE	NA	NA	NA	NA
WP_022742763.1\|1694628_1695672_+	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
WP_001115498.1\|1695715_1696363_-	nitrate/nitrite response regulator protein NarP	NA	NA	NA	NA
WP_000281877.1\|1697092_1697656_+	acyloxyacyl hydrolase	NA	NA	NA	NA
WP_001653202.1\|1697847_1698051_-	virulence protein MsgA	NA	NA	NA	NA
WP_000624225.1\|1698353_1699145_+\|tail	tail protein	Q1MVL8	Enterobacteria_phage	1.7e-48	31.6
WP_001113462.1\|1699441_1699645_+\|tail	tail protein	NA	NA	NA	NA
WP_001115840.1\|1699813_1702180_+	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	Q9MBL9	Phage_Gifsy-2	2.9e-72	88.7
WP_001202279.1\|1702508_1703498_+	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	6.0e-189	97.3
WP_010989045.1\|1703512_1703881_+	antitermination protein Q	A5LH77	Enterobacteria_phage	7.4e-52	81.7
WP_079792211.1\|1703909_1705241_-	NTPase	R9TRQ8	Vibrio_phage	1.6e-19	28.1
WP_001120499.1\|1705537_1705867_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	3.9e-36	94.6
WP_000554739.1\|1706459_1707701_+	hypothetical protein	Q8HAB4	Salmonella_phage	1.0e-52	95.3
WP_001215679.1\|1707703_1708231_+\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	3.1e-11	31.3
WP_000022213.1\|1708608_1709052_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	1.4e-28	43.9
WP_000884778.1\|1711275_1711566_-	DinI family protein	S4TND2	Salmonella_phage	4.7e-25	83.3
WP_000806401.1\|1711593_1712097_+	LexA family transcriptional regulator	Q1MVE7	Enterobacteria_phage	9.5e-50	71.3

DBSCAN-SWA_4

1783980 : 1793151

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569166.1\|1783980_1784928_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2
WP_000824855.1\|1784911_1785643_+	ABC transporter permease	NA	NA	NA	NA
WP_001261696.1\|1785623_1785731_-	protein YohO	NA	NA	NA	NA
WP_001240418.1\|1785790_1786522_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_000272845.1\|1786744_1788430_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.2e-279	91.1
WP_000598637.1\|1788426_1789146_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950413.1\|1789192_1789660_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_001197952.1\|1789716_1790247_-	YehR family lipoprotein	NA	NA	NA	NA
WP_000703137.1\|1790418_1790877_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_000195332.1\|1791117_1793151_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_5

1861459 : 1871965

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001111841.1\|1861459_1862863_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	27.1
WP_000981469.1\|1863040_1863934_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_000697840.1\|1864310_1865396_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
WP_001023662.1\|1865395_1866295_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.4e-30	36.3
WP_000857529.1\|1866342_1867221_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.3e-109	65.5
WP_000973708.1\|1867221_1867773_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.2e-52	58.0
WP_000018226.1\|1867778_1868771_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000648784.1\|1868767_1869541_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000565905.1\|1869545_1870625_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	6.6e-16	24.1
WP_000126349.1\|1870651_1871965_+	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_6

1958670 : 2008736

Salmonella_phage(83.58%)

head,terminase,portal,holin,plate,tail,integrase,capsid,protease

attL 1953248:1953262|attR 1969378:1969392

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1953248:1953262	attL	NA	NA	NA	NA
WP_001219015.1\|1958670_1959144_-	peptidase	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	7.1e-39	77.6
WP_001738920.1\|1959791_1960082_-	DUF4102 domain-containing protein	H2BDA3	Pseudomonas_phage	3.0e-08	49.1
WP_000598920.1\|1960453_1961251_-	DgsA anti-repressor MtfA	NA	NA	NA	NA
WP_000532847.1\|1961542_1962532_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	8.6e-196	100.0
WP_000414876.1\|1962533_1962776_-	DUF4224 domain-containing protein	Q8HAA9	Salmonella_phage	9.5e-40	100.0
WP_001061334.1\|1962800_1963370_-	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	7.1e-110	100.0
WP_020899398.1\|1963373_1963955_-	hypothetical protein	A0A192Y6F5	Salmonella_phage	4.7e-109	100.0
WP_000224241.1\|1963965_1964223_-	hypothetical protein	A0A192Y5W0	Salmonella_phage	1.3e-42	100.0
WP_000215886.1\|1964224_1964758_-	hypothetical protein	A0A192Y7N1	Salmonella_phage	2.5e-101	100.0
WP_000008351.1\|1964828_1965368_-	hypothetical protein	A0A192Y8M4	Salmonella_phage	2.6e-98	100.0
WP_000080416.1\|1965504_1966332_-	YfdQ family protein	A0A192Y6E5	Salmonella_phage	2.6e-153	100.0
WP_000997191.1\|1966389_1966761_-	hypothetical protein	A0A192Y6G0	Salmonella_phage	2.5e-63	100.0
WP_023891434.1\|1967300_1967525_+	hypothetical protein	A0A1C9IHY8	Salmonella_phage	1.6e-33	100.0
WP_001067432.1\|1967487_1967826_-	hypothetical protein	A0A1C9IHZ4	Salmonella_phage	7.0e-57	100.0
WP_001020636.1\|1968031_1968727_-	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	3.2e-128	100.0
WP_071529734.1\|1968700_1968886_+	hypothetical protein	NA	NA	NA	NA
WP_001191666.1\|1968824_1969049_+	helix-turn-helix transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
WP_000509731.1\|1969077_1969632_+	hypothetical protein	A0A1C9II13	Salmonella_phage	6.9e-102	100.0
1969378:1969392	attR	NA	NA	NA	NA
WP_001087402.1\|1969628_1970786_+	peptidase	Q8HA97	Salmonella_phage	4.2e-218	100.0
WP_000620702.1\|1970782_1971007_+	hypothetical protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
WP_000061500.1\|1971003_1971822_+	helix-turn-helix domain-containing protein	Q8HA96	Salmonella_phage	2.8e-136	100.0
WP_001684745.1\|1971823_1972306_+	PerC family transcriptional regulator	Q8HA95	Salmonella_phage	1.1e-87	100.0
WP_000066908.1\|1972305_1973199_+	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	7.6e-175	100.0
WP_001241579.1\|1973195_1973585_+	RusA family crossover junction endodeoxyribonuclease	Q8HA93	Salmonella_phage	3.7e-70	100.0
WP_020899399.1\|1973601_1974462_+	KilA-N domain-containing protein	Q8HA92	Salmonella_phage	8.4e-163	99.7
WP_020899400.1\|1974469_1975459_+	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	4.0e-193	99.1
WP_020899401.1\|1975472_1976225_+	antitermination protein	A0A192Y5X6	Salmonella_phage	1.8e-145	100.0
WP_001624505.1\|1976375_1976633_+	hypothetical protein	A0A1C9IHX4	Salmonella_phage	3.1e-41	100.0
WP_001283169.1\|1976778_1977165_+	membrane protein	A0A192Y8P2	Salmonella_phage	7.0e-61	100.0
WP_000422366.1\|1977151_1977433_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	9.7e-20	45.2
WP_001624504.1\|1977432_1978047_+	glycoside hydrolase family 19 protein	A0A192Y6G4	Salmonella_phage	5.7e-113	100.0
WP_001530346.1\|1978043_1978436_+	DUF2570 domain-containing protein	A0A192Y6H8	Salmonella_phage	2.8e-65	100.0
WP_097053918.1\|1978320_1978599_+	peptidase	Q8SBD8	Shigella_phage	1.3e-24	74.4
WP_001379492.1\|1978898_1979231_+	hypothetical protein	A0A192Y5Y1	Salmonella_phage	2.8e-58	100.0
WP_001135098.1\|1979281_1979632_+	HNH endonuclease	M1FQV2	Enterobacteria_phage	9.8e-62	94.8
WP_000929171.1\|1979757_1980252_+\|terminase	phage terminase small subunit P27 family	A0A1B3B2F4	Salmonella_phage	1.7e-88	100.0
WP_000088175.1\|1980248_1981982_+\|terminase	terminase large subunit	U5P0Q5	Shigella_phage	0.0e+00	98.3
WP_000605609.1\|1981993_1982176_+	hypothetical protein	Q8HAD5	Salmonella_phage	1.0e-25	100.0
WP_020899404.1\|1982175_1983417_+\|portal	phage portal protein	Q8HAD4	Salmonella_phage	2.9e-241	99.3
WP_001193639.1\|1983394_1984045_+\|head,protease	HK97 family phage prohead protease	Q8HAD3	Salmonella_phage	1.5e-119	100.0
WP_000257526.1\|1984059_1985265_+\|capsid	phage major capsid protein	A0A192Y5T6	Salmonella_phage	7.0e-224	100.0
WP_000601352.1\|1985315_1985516_+	hypothetical protein	A0A192Y7K5	Salmonella_phage	1.8e-28	100.0
WP_000927378.1\|1985518_1985842_+\|head,tail	phage gp6-like head-tail connector protein	A0A192Y8J4	Salmonella_phage	6.3e-55	100.0
WP_000702410.1\|1985838_1986243_+\|head	phage head closure protein	A0A192Y6C2	Salmonella_phage	3.2e-72	100.0
WP_001135699.1\|1986214_1986727_+	hypothetical protein	A0A192Y6D2	Salmonella_phage	3.5e-92	100.0
WP_000779216.1\|1986723_1987284_+	hypothetical protein	A0A192Y5U4	Salmonella_phage	8.0e-106	100.0
WP_000497740.1\|1987287_1987452_+	DUF2635 domain-containing protein	A0A1C9II04	Salmonella_phage	1.3e-24	100.0
WP_001007996.1\|1987441_1988938_+\|tail	tail sheath protein	A0A192Y7L1	Salmonella_phage	2.1e-278	100.0
WP_000515952.1\|1988937_1989294_+\|tail	tail protein	A0A192Y8K0	Salmonella_phage	2.6e-62	100.0
WP_000588854.1\|1989290_1989617_+\|tail	phage tail assembly protein	A0A192Y6C5	Salmonella_phage	1.3e-52	100.0
WP_000785390.1\|1989701_1991630_+\|tail	phage tail tape measure protein	A0A192Y6D8	Salmonella_phage	0.0e+00	100.0
WP_000863827.1\|1991663_1993004_+	DNA circularization protein	A0A192Y5U9	Salmonella_phage	5.2e-252	100.0
WP_001066630.1\|1993000_1994059_+\|plate	baseplate protein	A0A192Y7L7	Salmonella_phage	1.3e-202	100.0
WP_001273648.1\|1994058_1994592_+\|plate	phage baseplate assembly protein	A0A192Y8K5	Salmonella_phage	8.4e-97	100.0
WP_000605051.1\|1994596_1995010_+	hypothetical protein	A0A192Y6D0	Salmonella_phage	3.1e-75	100.0
WP_000785578.1\|1995002_1996082_+\|plate	baseplate J/gp47 family protein	A0A192Y6E4	Salmonella_phage	2.9e-205	100.0
WP_001207832.1\|1996084_1996672_+	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	2.9e-114	100.0
WP_020899405.1\|1996658_1998221_+	hypothetical protein	A0A192Y7M1	Salmonella_phage	1.0e-288	100.0
WP_022742744.1\|1998190_1998796_+\|tail	tail fiber assembly protein	A0A192Y8L2	Salmonella_phage	2.7e-107	100.0
WP_000836773.1\|1998909_1999143_-	hypothetical protein	A0A192Y6D5	Salmonella_phage	1.2e-36	100.0
WP_122815478.1\|1999217_1999331_-	hypothetical protein	A0A1C9IHU6	Salmonella_phage	4.3e-11	100.0
WP_000842532.1\|1999378_1999792_-	hypothetical protein	A0A192Y6F0	Salmonella_phage	2.9e-73	100.0
WP_001093793.1\|1999788_2000001_-	hypothetical protein	A0A192Y5V6	Salmonella_phage	2.7e-30	100.0
WP_000500831.1\|2001194_2001356_+	hypothetical protein	NA	NA	NA	NA
WP_000394196.1\|2001482_2001902_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_000457662.1\|2001904_2003173_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	4.2e-227	92.2
WP_000208509.1\|2003627_2003840_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_024131109.1\|2003850_2004039_+	hypothetical protein	NA	NA	NA	NA
WP_001080680.1\|2004299_2005496_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.8e-110	56.1
WP_000107430.1\|2006145_2006445_+	membrane protein	NA	NA	NA	NA
WP_000377041.1\|2006536_2007232_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
WP_001157322.1\|2007305_2008736_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_7

2112780 : 2156369

Edwardsiella_phage(20.0%)

head,lysis,terminase,transposase,tail,integrase

attL 2109712:2109726|attR 2146126:2146140

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2109712:2109726	attL	NA	NA	NA	NA
WP_000856224.1\|2112780_2113011_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
WP_000168393.1\|2113148_2113523_+	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_000979702.1\|2113523_2114399_+	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_000722368.1\|2114415_2114769_+	YebY family protein	NA	NA	NA	NA
WP_022742740.1\|2115151_2116231_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.3e-101	52.8
WP_001575998.1\|2116205_2116484_-	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.4e-10	37.5
WP_077907869.1\|2116544_2116781_-	hypothetical protein	NA	NA	NA	NA
WP_023139359.1\|2117071_2117251_-	DUF1187 family protein	A0A0U2QL97	Escherichia_phage	7.3e-13	60.3
WP_023139358.1\|2117861_2118194_-	hypothetical protein	S4TNP2	Salmonella_phage	8.5e-15	72.7
WP_001033921.1\|2118186_2118507_-	hypothetical protein	A0A222YY67	Escherichia_phage	3.6e-34	60.2
WP_001534364.1\|2118542_2119373_-	recombination protein RecT	A0A1P8DTF2	Proteus_phage	1.0e-104	72.0
WP_022742735.1\|2119365_2122056_-	exodeoxyribonuclease VIII	Q9QF34	Lambdoid_phage	2.2e-116	75.6
WP_000799627.1\|2122196_2122532_-	hypothetical protein	NA	NA	NA	NA
WP_000682660.1\|2122607_2122814_-	cell division inhibitor protein	I6PBM9	Cronobacter_phage	3.0e-10	45.6
WP_000103933.1\|2122817_2123093_-	hypothetical protein	NA	NA	NA	NA
WP_024135672.1\|2123353_2123533_+	hypothetical protein	NA	NA	NA	NA
WP_000783771.1\|2123477_2123666_-	hypothetical protein	NA	NA	NA	NA
WP_001574209.1\|2123963_2124362_-	helix-turn-helix domain-containing protein	K7PH19	Enterobacteria_phage	1.2e-18	56.0
WP_001033911.1\|2124460_2124715_+	helix-turn-helix transcriptional regulator	K7PKH4	Enterobacteria_phage	5.3e-17	60.9
WP_001534383.1\|2124701_2125196_+	hypothetical protein	NA	NA	NA	NA
WP_022742734.1\|2125239_2126247_+	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	1.8e-124	67.5
WP_000140163.1\|2126239_2126701_+	replication protein	A0A0U2JGJ0	Escherichia_phage	7.8e-67	74.8
WP_022742732.1\|2126713_2127109_+	DUF977 family protein	A0A088CBK9	Shigella_phage	6.4e-17	37.0
WP_023139357.1\|2127105_2127378_+	hypothetical protein	NA	NA	NA	NA
WP_024150652.1\|2127584_2127737_+	Hok/Gef family protein	NA	NA	NA	NA
WP_024150651.1\|2127929_2128235_+	hypothetical protein	NA	NA	NA	NA
WP_022742730.1\|2128298_2128898_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	5.0e-98	83.9
WP_021000145.1\|2128894_2129089_+	hypothetical protein	S4TNP0	Salmonella_phage	6.1e-13	61.5
WP_023139355.1\|2129085_2129397_+	DUF1364 family protein	K7P7Q1	Enterobacteria_phage	6.1e-39	84.8
WP_023139354.1\|2129736_2130078_+	antitermination protein from phage origin	A0A0P0ZCW0	Stx2-converting_phage	1.1e-54	84.1
WP_022742728.1\|2130109_2130640_-	hypothetical protein	NA	NA	NA	NA
WP_023139353.1\|2130626_2131556_-	hypothetical protein	NA	NA	NA	NA
WP_071590376.1\|2131689_2131917_-	hypothetical protein	NA	NA	NA	NA
WP_023139352.1\|2132033_2132240_+	hypothetical protein	NA	NA	NA	NA
WP_022742726.1\|2132230_2132776_-	hypothetical protein	NA	NA	NA	NA
WP_000502119.1\|2133053_2133512_+\|transposase	IS200/IS605-like element IS200F family transposase	A0A1S5RHE3	Helicobacter_phage	5.1e-10	33.9
WP_001526513.1\|2133678_2133981_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_001208103.1\|2133958_2134447_+	lysozyme	M9P0E5	Enterobacteria_phage	2.1e-57	68.1
WP_085983312.1\|2134467_2134908_+\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	3.5e-56	84.3
WP_001113128.1\|2135133_2135316_+	DUF826 domain-containing protein	NA	NA	NA	NA
WP_022742724.1\|2135386_2136139_+	hypothetical protein	G8C7P2	Escherichia_phage	5.3e-12	75.6
WP_022742723.1\|2136104_2137526_+\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	1.8e-186	68.0
WP_023139350.1\|2137525_2139046_+	DUF1073 domain-containing protein	A0A2R3UAL5	Myoviridae_environmental_samples	7.5e-106	44.4
WP_000552017.1\|2139086_2139776_+\|head	head morphogenesis protein	H9C0V1	Aeromonas_phage	4.5e-58	49.6
WP_023139349.1\|2139772_2141119_+	DUF2213 domain-containing protein	A0A219YCD3	Aeromonas_phage	3.2e-68	37.4
WP_001525451.1\|2141120_2141603_+	hypothetical protein	A0A1X9SFC3	Acinetobacter_phage	1.1e-26	48.8
WP_001031915.1\|2141602_2142631_+	hypothetical protein	A0A219YBB0	Aeromonas_phage	2.3e-82	48.7
WP_001748493.1\|2142634_2142982_+	hypothetical protein	H9C0V9	Aeromonas_phage	3.0e-10	40.2
WP_023139348.1\|2142988_2143444_+	DUF4054 domain-containing protein	Q2NPC6	Xanthomonas_phage	1.2e-19	46.0
WP_022742718.1\|2143437_2144022_+	hypothetical protein	H9C0W2	Aeromonas_phage	3.2e-17	30.6
WP_001748490.1\|2144018_2144384_+	hypothetical protein	A0A077KAW7	Edwardsiella_phage	8.8e-21	39.7
WP_000094504.1\|2144368_2144914_+	hypothetical protein	NA	NA	NA	NA
WP_001748488.1\|2144894_2146379_+	DUF3383 domain-containing protein	A0A077KGV4	Edwardsiella_phage	4.0e-96	41.0
2146126:2146140	attR	NA	NA	NA	NA
WP_000016414.1\|2146379_2146826_+	hypothetical protein	Q2NPD1	Xanthomonas_phage	4.8e-21	40.4
WP_000101348.1\|2146825_2147230_+	hypothetical protein	H9C0W7	Aeromonas_phage	1.8e-19	44.8
WP_000228831.1\|2147271_2147454_+	hypothetical protein	NA	NA	NA	NA
WP_022742717.1\|2147437_2149609_+	transglycosylase SLT domain-containing protein	A0A0M4REK7	Salmonella_phage	1.4e-49	67.1
WP_022742716.1\|2149605_2150316_+	hypothetical protein	A0A077KGW3	Edwardsiella_phage	6.5e-28	34.6
WP_000890115.1\|2150315_2150618_+	hypothetical protein	A0A077K9U4	Edwardsiella_phage	7.0e-24	49.5
WP_000122818.1\|2150614_2151484_+	hypothetical protein	A0A077KC17	Edwardsiella_phage	9.1e-32	32.7
WP_022742715.1\|2151464_2152142_+	hypothetical protein	A0A077KAY0	Edwardsiella_phage	4.6e-31	35.5
WP_001191865.1\|2152154_2152511_+	hypothetical protein	A0A077KCA1	Edwardsiella_phage	1.6e-19	49.1
WP_022742714.1\|2152507_2153749_+	hypothetical protein	A0A077KGW9	Edwardsiella_phage	4.5e-101	49.6
WP_022742713.1\|2153750_2154353_+	DUF2612 domain-containing protein	H9C0Y0	Aeromonas_phage	5.9e-30	43.2
WP_022742712.1\|2154342_2155794_+\|tail	tail fiber protein	E5G6P0	Salmonella_phage	2.9e-43	71.2
WP_022742711.1\|2155793_2156369_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	2.9e-95	89.5

DBSCAN-SWA_8

2953313 : 3052122

100

Salmonella_phage(43.64%)

lysis,terminase,portal,holin,tRNA,tail,integrase,protease

attL 2977407:2977426|attR 3049195:3049214

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000938191.1\|2953313_2953994_+\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	8.3e-81	70.6
WP_000374050.1\|2954614_2955274_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.3e-43	51.9
WP_000904446.1\|2955360_2955690_+	sulfurtransferase TusE	NA	NA	NA	NA
WP_000072884.1\|2955686_2955968_-	acylphosphatase	NA	NA	NA	NA
WP_000548082.1\|2956016_2956796_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000859419.1\|2956821_2957370_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_000140480.1\|2957584_2958796_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000561983.1\|2958853_2959171_+	heat shock protein HspQ	NA	NA	NA	NA
WP_000975203.1\|2959215_2959632_-	CoA-binding protein	NA	NA	NA	NA
WP_000847719.1\|2959802_2960465_+	DUF2057 family protein	NA	NA	NA	NA
WP_000424187.1\|2960559_2961018_+	methylglyoxal synthase	NA	NA	NA	NA
WP_000420505.1\|2961053_2963108_-	DNA helicase IV	A7KV33	Bacillus_phage	8.5e-20	27.6
WP_001261222.1\|2963231_2963678_+	YccF domain-containing protein	NA	NA	NA	NA
WP_000950880.1\|2963696_2965850_+	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001202375.1\|2965836_2966442_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_000288732.1\|2966658_2967168_+	cell division inhibitor SulA	NA	NA	NA	NA
WP_001674965.1\|2967524_2968577_+	porin OmpA	NA	NA	NA	NA
WP_000877172.1\|2968648_2969101_-	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_000156454.1\|2969286_2971047_+\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000227928.1\|2971115_2971634_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_001537784.1\|2971733_2971901_-	ribosome modulation factor	NA	NA	NA	NA
WP_000759136.1\|2972156_2972720_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_000433414.1\|2972716_2974357_-	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000333152.1\|2974361_2975615_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000053044.1\|2975629_2977537_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
2977407:2977426	attL	NA	NA	NA	NA
WP_001086485.1\|2977549_2979658_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_000224069.1\|2979756_2980866_+	MOSC domain-containing protein	NA	NA	NA	NA
WP_001220671.1\|2980862_2981405_-	cell division protein ZapC	NA	NA	NA	NA
WP_022742665.1\|2981570_2982581_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_000193784.1\|2982788_2985401_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.6
WP_000497441.1\|2985827_2986019_+	DinI-like family protein	S4TNM0	Salmonella_phage	6.2e-26	95.2
WP_001525490.1\|2986289_2986976_+	hypothetical protein	NA	NA	NA	NA
WP_010989011.1\|2986960_2987260_+	hypothetical protein	NA	NA	NA	NA
WP_000334547.1\|2987328_2987955_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
WP_001533476.1\|2988602_2989571_-	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	7.9e-194	99.7
WP_022742661.1\|2990046_2990628_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.3e-94	88.5
WP_022742660.1\|2990627_2993066_-\|tail	tail fiber protein	A0A0K2FIZ6	Escherichia_phage	1.7e-91	63.6
WP_000178849.1\|2993119_2993362_-	hypothetical protein	NA	NA	NA	NA
WP_126834981.1\|2993400_2994969_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	1.2e-127	63.9
WP_000246065.1\|2996823_2997528_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.2e-67	62.6
WP_022742655.1\|2998172_2998868_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	6.5e-89	66.2
WP_000877926.1\|2998957_2999491_+	superoxide dismutase [Cu-Zn]	Q9MC02	Salmonella_phage	1.8e-46	54.0
WP_000725267.1\|2999607_3000105_-	outer membrane beta-barrel protein	A0A1B0VBR9	Salmonella_phage	1.4e-16	36.6
WP_000978296.1\|3000203_3000536_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	3.3e-35	61.5
WP_010989010.1\|3000532_3003520_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	8.2e-266	62.1
WP_010989009.1\|3003599_3003929_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	5.0e-23	50.9
WP_000478859.1\|3003925_3004324_-\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	8.6e-30	56.8
WP_000132756.1\|3004369_3005119_-\|tail	tail protein	A0A291AWU6	Escherichia_phage	3.7e-90	68.6
WP_000196702.1\|3005130_3005532_-\|tail	tail protein	K7PHM6	Enterobacterial_phage	1.5e-42	60.9
WP_000453194.1\|3005528_3006095_-\|tail	phage tail protein	Q9G063	Phage_Gifsy-2	9.5e-14	97.8
WP_000774239.1\|3006075_3006375_-	ATP-binding protein	K7PH43	Enterobacteria_phage	4.5e-15	45.1
WP_001107908.1\|3006367_3006691_-	DUF2190 family protein	K7PLV6	Enterobacteria_phage	7.7e-29	61.3
WP_010989008.1\|3006781_3008863_-\|protease	Clp protease ClpP	A0A291AWT6	Escherichia_phage	4.8e-265	69.5
WP_077679777.1\|3008786_3010304_-\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	1.5e-175	65.1
WP_000196190.1\|3010330_3010537_-	hypothetical protein	A0A1W6JT66	Pseudomonas_phage	2.9e-05	53.3
WP_000989241.1\|3010533_3012672_-\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	3.4e-290	72.6
WP_000371784.1\|3012628_3013162_-	DUF1441 family protein	A0A291AWV8	Escherichia_phage	1.0e-33	48.1
WP_001541990.1\|3013369_3013849_-\|lysis	lysis protein	Q56118	Enterobacteria_phage	1.4e-55	77.0
WP_000984586.1\|3013866_3014319_-	lysozyme	A0A0M4R365	Salmonella_phage	2.3e-79	97.3
WP_001574216.1\|3014302_3014632_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
WP_001141973.1\|3014907_3015594_+\|protease	type III secretion system effector protease GtgA	Q9MBM0	Phage_Gifsy-2	2.1e-132	100.0
WP_000798705.1\|3015954_3016404_+	hypothetical protein	NA	NA	NA	NA
WP_001534733.1\|3016539_3016665_-	hypothetical protein	NA	NA	NA	NA
WP_010989004.1\|3016838_3017156_-	hypothetical protein	NA	NA	NA	NA
WP_022742653.1\|3017222_3018020_-	antitermination protein	A0A0M4S661	Salmonella_phage	5.2e-151	99.2
WP_001617856.1\|3018009_3018156_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
WP_001096552.1\|3018152_3018764_-	hypothetical protein	A0A0M4RU10	Salmonella_phage	6.9e-79	91.6
WP_001241019.1\|3018766_3018973_-	hypothetical protein	S4TNP0	Salmonella_phage	3.5e-35	100.0
WP_000807548.1\|3019657_3019879_-	hypothetical protein	NA	NA	NA	NA
WP_001217665.1\|3019990_3020224_-	DinI family protein	H6WRY5	Salmonella_phage	2.1e-36	98.7
WP_014343823.1\|3020515_3020806_-	hypothetical protein	NA	NA	NA	NA
WP_000065108.1\|3020883_3021195_-	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	7.2e-32	97.2
WP_000113629.1\|3021191_3021539_-	DUF977 family protein	H6WRX9	Salmonella_phage	5.4e-52	89.6
WP_000800010.1\|3021549_3022299_-	ATP-binding protein	S4TNF5	Salmonella_phage	3.6e-138	99.6
WP_000062941.1\|3022301_3023285_-	hypothetical protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
WP_001574095.1\|3023369_3023744_-	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
WP_000370145.1\|3023709_3023949_-	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	8.3e-12	47.2
WP_001038966.1\|3024068_3024479_+	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	8.1e-07	42.4
WP_010989002.1\|3024528_3024789_+	hypothetical protein	NA	NA	NA	NA
WP_000917564.1\|3024781_3024940_+	hypothetical protein	H6WRX3	Salmonella_phage	1.2e-22	98.1
WP_001668146.1\|3024961_3025261_+	hypothetical protein	S4TSN6	Salmonella_phage	8.1e-49	84.5
WP_022742652.1\|3025387_3028273_+	exodeoxyribonuclease VIII	H6WRX1	Salmonella_phage	0.0e+00	97.3
WP_001539618.1\|3028235_3029393_+	recombinase RecT	S4TTE8	Salmonella_phage	1.6e-217	100.0
WP_001237031.1\|3029435_3029675_+	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_000065276.1\|3029715_3029964_+	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001262306.1\|3030008_3031301_+\|integrase	site-specific integrase	S4TSP2	Salmonella_phage	1.0e-252	99.8
WP_000191399.1\|3031495_3032698_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_000544849.1\|3034455_3035670_-	diaminopropionate ammonia-lyase	NA	NA	NA	NA
WP_000301921.1\|3035756_3035990_+	hypothetical protein	NA	NA	NA	NA
WP_000762342.1\|3035986_3036448_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_000117870.1\|3036648_3038049_+\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	4.5e-81	35.1
WP_000977713.1\|3038655_3039747_+	porin OmpF	Q1MVN1	Enterobacteria_phage	2.2e-99	51.7
WP_000462653.1\|3039931_3041122_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_001109471.1\|3041183_3041831_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_000357052.1\|3041858_3042407_-	YcbK family protein	A0A0K1LKR7	Rhodobacter_phage	1.2e-05	33.7
WP_000925872.1\|3042666_3044508_-	L,D-transpeptidase	NA	NA	NA	NA
WP_022742649.1\|3044852_3049319_-	chromosome partition protein MukB	NA	NA	NA	NA
3049195:3049214	attR	NA	NA	NA	NA
WP_000060025.1\|3049318_3050023_-	chromosome partition protein MukE	NA	NA	NA	NA
WP_001288828.1\|3050003_3051326_-	chromosome partition protein MukF	NA	NA	NA	NA
WP_001154025.1\|3051318_3052122_-\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA

DBSCAN-SWA_9

3102185 : 3110917

Enterobacteria_phage(14.29%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085983316.1\|3102185_3103440_+\|transposase	IS3-like element ISSen1 family transposase	Q6H9S3	Enterobacteria_phage	5.4e-17	33.9
WP_119920232.1\|3103455_3103731_-	hypothetical protein	NA	NA	NA	NA
WP_000502119.1\|3103903_3104362_-\|transposase	IS200/IS605-like element IS200F family transposase	A0A1S5RHE3	Helicobacter_phage	5.1e-10	33.9
WP_000934063.1\|3104553_3106830_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_000520789.1\|3106860_3107181_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000447499.1\|3107504_3107726_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000125877.1\|3107855_3109802_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
WP_001201751.1\|3109798_3110917_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9

DBSCAN-SWA_10

3703559 : 3748803

Enterobacteria_phage(79.1%)

lysis,terminase,portal,coat,integrase,protease

attL 3695249:3695265|attR 3758018:3758034

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3695249:3695265	attL	NA	NA	NA	NA
WP_077942643.1\|3703559_3703739_-	hypothetical protein	M1E3P7	Enterobacteria_phage	4.3e-13	92.3
WP_000915528.1\|3703855_3704218_+	GtrA family protein	A0A192Y6N5	Salmonella_phage	5.0e-61	100.0
WP_000703639.1\|3704214_3705147_+	glycosyltransferase family 2 protein	A8CG95	Salmonella_phage	5.5e-176	100.0
WP_000671496.1\|3705136_3706594_+	hypothetical protein	A8CG94	Salmonella_phage	1.3e-240	100.0
WP_000129933.1\|3706652_3708656_-	endorhamnosidase	Q76H47	Enterobacteria_phage	0.0e+00	100.0
WP_000532177.1\|3708791_3709040_+	Arc family DNA-binding protein	Q76H48	Enterobacteria_phage	1.8e-38	100.0
WP_071533035.1\|3709060_3709354_-	hypothetical protein	Q76H12	Enterobacteria_phage	3.2e-50	100.0
WP_001029860.1\|3709492_3711469_-	hypothetical protein	Q76H13	Enterobacteria_phage	0.0e+00	100.0
WP_000246977.1\|3711468_3712905_-	DNA transfer protein	Q76H14	Enterobacteria_phage	7.7e-246	100.0
WP_000964904.1\|3712915_3713605_-	hypothetical protein	A0A2H5BFK5	Salmonella_phage	2.9e-118	100.0
WP_000627593.1\|3713607_3714063_-	DUF2824 family protein	Q76H16	Enterobacteria_phage	1.8e-87	100.0
WP_000774917.1\|3714062_3714764_-	hypothetical protein	Q76H17	Enterobacteria_phage	1.7e-76	100.0
WP_001122420.1\|3714767_3716186_-	Packaged DNA stabilization protein gp10	Q76H18	Enterobacteria_phage	6.4e-277	100.0
WP_001166103.1\|3716145_3716646_-	packaged DNA stabilization protein p27	Q76H19	Enterobacteria_phage	4.2e-90	100.0
WP_000538670.1\|3716629_3717190_-	hypothetical protein	C6ZR11	Salmonella_phage	9.8e-104	100.0
WP_001196937.1\|3717230_3718523_-\|coat	coat protein	Q76H21	Enterobacteria_phage	1.1e-243	100.0
WP_000433855.1\|3718522_3719434_-	scaffold protein	Q76H22	Enterobacteria_phage	1.5e-162	100.0
WP_000774652.1\|3719447_3721625_-\|portal	portal protein	Q76H23	Enterobacteria_phage	0.0e+00	100.0
WP_000417860.1\|3721624_3723124_-\|terminase	terminase	Q76H24	Enterobacteria_phage	2.8e-307	100.0
WP_000729923.1\|3723101_3723590_-	hypothetical protein	Q76H25	Enterobacteria_phage	1.0e-88	100.0
WP_001687044.1\|3723593_3723998_-	hypothetical protein	Q76H26	Enterobacteria_phage	1.1e-67	100.0
WP_001140562.1\|3723997_3724387_-	hypothetical protein	Q76H27	Enterobacteria_phage	3.9e-75	100.0
WP_000808099.1\|3724390_3724633_-	DUF2560 family protein	Q76H60	Enterobacteria_phage	1.7e-33	100.0
WP_000877028.1\|3724855_3725386_-	KilA-N domain-containing protein	Q76H61	Enterobacteria_phage	1.3e-94	100.0
WP_071533034.1\|3725339_3725564_-	hypothetical protein	A0A1V0E5I0	Salmonella_phage	3.6e-25	88.7
WP_001687043.1\|3725598_3726066_-\|lysis	lysis protein	Q76H63	Enterobacteria_phage	1.7e-77	100.0
WP_024136257.1\|3726062_3726560_-	lysozyme	B8K1G9	Salmonella_phage	4.5e-92	100.0
WP_000286100.1\|3726537_3726741_-	hypothetical protein	I6R0S9	Salmonella_phage	1.1e-33	100.0
WP_071533031.1\|3726825_3727059_-	hypothetical protein	M1E3N9	Enterobacteria_phage	1.1e-21	87.0
WP_001047566.1\|3727171_3727945_-	antitermination protein	Q76H66	Enterobacteria_phage	8.1e-133	100.0
WP_000219133.1\|3727941_3728121_-	hypothetical protein	Q76H67	Enterobacteria_phage	1.9e-24	100.0
WP_000149882.1\|3728101_3728305_-	protein ninH	I6RSQ6	Salmonella_phage	7.2e-33	100.0
WP_000036320.1\|3728301_3728526_-	hypothetical protein	Q76H69	Enterobacteria_phage	6.3e-38	100.0
WP_001108073.1\|3728522_3729134_-	recombination protein NinG	Q76H70	Enterobacteria_phage	7.9e-99	100.0
WP_000950963.1\|3729126_3729303_-	protein ninF	Q76H71	Enterobacteria_phage	6.7e-27	100.0
WP_001532927.1\|3729295_3729637_-	DUF2591 family protein	Q76H72	Enterobacteria_phage	2.1e-64	100.0
WP_000113770.1\|3729639_3729816_-	NinE family protein	Q76H73	Enterobacteria_phage	1.0e-27	100.0
WP_000679703.1\|3729782_3729956_-	hypothetical protein	Q76H74	Enterobacteria_phage	2.3e-32	100.0
WP_000736891.1\|3729952_3730390_-	recombination protein NinB	Q76H49	Enterobacteria_phage	4.5e-80	100.0
WP_001036030.1\|3730463_3730733_-	hypothetical protein	Q76H50	Enterobacteria_phage	4.9e-45	100.0
WP_001248410.1\|3730729_3732106_-	AAA family ATPase	Q76H51	Enterobacteria_phage	1.9e-254	100.0
WP_000539342.1\|3732102_3732924_-	replication protein	Q76H52	Enterobacteria_phage	5.2e-154	100.0
WP_001103492.1\|3733106_3733388_-	hypothetical protein	Q76H54	Enterobacteria_phage	4.3e-44	100.0
WP_000182204.1\|3733498_3733714_-	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.3e-32	100.0
WP_000712403.1\|3733824_3734514_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.3e-126	100.0
WP_001532928.1\|3734678_3735758_+	hypothetical protein	A0A192Y6S0	Salmonella_phage	1.5e-193	100.0
WP_000834175.1\|3735796_3736000_-	hypothetical protein	A0A2H5BFH9	Salmonella_phage	2.0e-27	100.0
WP_000216178.1\|3736363_3736666_+	hypothetical protein	Q76H58	Enterobacteria_phage	9.7e-50	100.0
WP_001066179.1\|3736678_3737266_-	superinfection exclusion protein B	Q76H59	Enterobacteria_phage	1.4e-100	100.0
WP_000213982.1\|3737479_3737674_+	Restriction inhibitor protein ral	Q76H34	Enterobacteria_phage	1.9e-30	100.0
WP_015974224.1\|3737757_3738402_+	pentapeptide repeat-containing protein	Q76H35	Enterobacteria_phage	6.5e-51	100.0
WP_000713613.1\|3738435_3738723_+	hypothetical protein	Q76H36	Enterobacteria_phage	2.7e-49	100.0
WP_000776963.1\|3738998_3739313_+	Superinfection exclusion protein	Q76H37	Enterobacteria_phage	1.5e-56	100.0
WP_000141641.1\|3739397_3739556_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q76H38	Enterobacteria_phage	2.4e-23	100.0
WP_000156731.1\|3739536_3739725_+	DUF5444 family protein	I6S647	Salmonella_phage	3.7e-31	100.0
WP_001046968.1\|3739854_3740562_+	recombinase	Q76H40	Enterobacteria_phage	3.1e-139	100.0
WP_001253476.1\|3740561_3740846_+	sigma-70 family RNA polymerase sigma factor	Q76H41	Enterobacteria_phage	1.4e-45	100.0
WP_001111291.1\|3740892_3741186_+	DUF2856 family protein	Q76H42	Enterobacteria_phage	1.4e-48	100.0
WP_001214777.1\|3741196_3741367_+	DUF2737 family protein	Q76H43	Enterobacteria_phage	1.6e-25	100.0
WP_000812203.1\|3741363_3741873_+	hypothetical protein	Q76H44	Enterobacteria_phage	2.8e-89	100.0
WP_071533029.1\|3741869_3742103_+	hypothetical protein	NA	NA	NA	NA
WP_025617570.1\|3742089_3742734_+	DUF551 domain-containing protein	Q76H45	Enterobacteria_phage	1.4e-122	99.5
WP_000371199.1\|3742733_3743018_+	DUF4752 family protein	Q76H46	Enterobacteria_phage	1.6e-49	100.0
WP_000002104.1\|3743010_3743295_+	ASCH domain-containing protein	Q76H28	Enterobacteria_phage	1.4e-50	100.0
WP_000051897.1\|3743733_3744897_+\|integrase	site-specific integrase	Q76H30	Enterobacteria_phage	3.7e-230	100.0
WP_000893231.1\|3745102_3746353_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.6e-98	47.5
WP_001285275.1\|3746364_3747468_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	6.9e-61	39.8
WP_001043675.1\|3747750_3748803_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.7e-112	58.5
3758018:3758034	attR	NA	NA	NA	NA

DBSCAN-SWA_11

4502269 : 4549312

Burkholderia_phage(42.86%)

tail,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001182237.1\|4502269_4503268_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_001039339.1\|4503355_4504666_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_000416272.1\|4504912_4505428_+	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA
WP_001030592.1\|4505526_4505736_-	CsbD family protein	NA	NA	NA	NA
WP_010989093.1\|4505757_4505871_-	hypothetical protein	NA	NA	NA	NA
WP_001128116.1\|4505867_4507193_-	MATE family efflux transporter DinF	NA	NA	NA	NA
WP_000646079.1\|4507371_4507980_-	repressor LexA	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
WP_000002902.1\|4508088_4508457_-	diacylglycerol kinase	NA	NA	NA	NA
WP_000017360.1\|4508627_4511048_+	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_000455249.1\|4511146_4512019_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_000019219.1\|4512032_4512530_-	chorismate lyase	NA	NA	NA	NA
WP_000782504.1\|4512710_4513628_-	maltose operon protein MalM	NA	NA	NA	NA
WP_000973645.1\|4513791_4515150_-	maltoporin	NA	NA	NA	NA
WP_000179176.1\|4515238_4516348_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
WP_000695417.1\|4516709_4517900_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
WP_000382573.1\|4518031_4519576_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
WP_001252085.1\|4519590_4520481_+	maltose ABC transporter permease MalG	NA	NA	NA	NA
WP_000982749.1\|4520646_4521057_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
WP_022742864.1\|4521199_4523296_-	YjbH domain-containing protein	NA	NA	NA	NA
WP_000977979.1\|4523295_4524033_-	capsule biosynthesis GfcC family protein	NA	NA	NA	NA
WP_022742863.1\|4524029_4524698_-	YjbF family lipoprotein	NA	NA	NA	NA
WP_001541297.1\|4524731_4524974_-	outer membrane protein	NA	NA	NA	NA
WP_000790037.1\|4525417_4527067_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_000136400.1\|4527411_4528761_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
WP_000615248.1\|4528893_4529241_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
WP_001226442.1\|4529816_4530104_+	membrane protein	Q6QIC8	Burkholderia_phage	2.3e-16	49.1
WP_001270441.1\|4530106_4530712_+	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-60	59.9
WP_000777266.1\|4530724_4531039_+	membrane protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
WP_000449433.1\|4531198_4531654_+	hypothetical protein	NA	NA	NA	NA
WP_000875314.1\|4531650_4531848_+	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
WP_000729852.1\|4531837_4533265_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.1e-194	70.9
WP_000907494.1\|4533264_4533789_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
WP_001003642.1\|4533840_4534158_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001185654.1\|4534117_4534246_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_001262499.1\|4534342_4536697_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	9.0e-66	30.6
WP_001269716.1\|4537648_4537858_+	membrane protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
WP_000818154.1\|4537845_4538889_+	phage late control D family protein	Q6QIA2	Burkholderia_phage	2.5e-76	45.1
WP_000679398.1\|4538898_4539621_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.3e-11	41.0
WP_000593182.1\|4539948_4540311_+	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
WP_000703632.1\|4540307_4541237_+	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	8.8e-150	83.8
WP_001095011.1\|4541236_4542784_+	membrane protein	B9UDL6	Salmonella_phage	1.9e-48	29.9
WP_001093501.1\|4542947_4543307_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
WP_000951736.1\|4543297_4544413_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.8e-101	52.2
WP_000359500.1\|4544405_4545038_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	6.6e-24	56.4
WP_000368196.1\|4545040_4546786_+\|tail	tail protein	A0A0M3ULF6	Salmonella_phage	3.2e-52	52.2
WP_001526208.1\|4546790_4547396_+	DUF4376 domain-containing protein	NA	NA	NA	NA
WP_000084331.1\|4547392_4547848_+	hypothetical protein	NA	NA	NA	NA
WP_010989092.1\|4548096_4548387_+	membrane protein	NA	NA	NA	NA
WP_000587738.1\|4548583_4549312_+	hypothetical protein	A0A077SLK3	Escherichia_phage	5.6e-35	37.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040569

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP040568

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection