CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040572	Escherichia coli O157:H7 strain ECP17-46 chromosome, complete genome	6 crisprs	csa3,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,PrimPol,DinG	0	8	14	0
NZ_CP040573	Escherichia coli O157:H7 strain ECP17-46 plasmid pCFSAN059540, complete sequence	0 crisprs	NA	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040572_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040572_1

1060391-1060479

Unclear

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCCAGCGGGGATAAACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040572_1

>merge|NZ_CP040572|1|1060391-1060479|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCGCAAAAGCGGGCAGCGAAAAAATTAAAGTCGAGGAGTTCCCCGCGCCAGTGGGGATAAACC

>NZ_CP040572|1|1|1060391-1060479|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACC	GCAAAAGCGGGCAGCGAAAAAATTAAAGTCGAG
GAGTTCCCCGCGCCAGTGGGGATAAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040572.1\|WP_012779383.1\|1055623_1056538_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP040572.1\|WP_001071648.1\|1051521_1052313_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP040572.1\|WP_001164582.1\|1062619_1063897_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP040572.1\|WP_000210878.1\|1052540_1054178_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP040572.1\|WP_000254738.1\|1051115_1051451_+\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP040572.1\|WP_000987944.1\|1071908_1072274_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP040572.1\|WP_001217990.1\|1056534_1057683_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP040572.1\|WP_001199973.1\|1059379_1060051_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP040572.1\|WP_001243487.1\|1057916_1058591_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP040572.1\|WP_000581937.1\|1050867_1051116_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP040572.1\|WP_001130278.1\|1069716_1070292_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP040572.1\|WP_001301644.1\|1067932_1068712_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP040572.1\|WP_000039701.1\|1061114_1062593_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP040572.1\|WP_000109503.1\|1070308_1070569_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP040572.1\|WP_001301471.1\|1070559_1071831_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP040572.1\|WP_000021347.1\|1064215_1065001_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP040572.1\|WP_042909427.1\|1058604_1059225_-\|LemA-family-protein	unknown	unknown	gnl\|CDD\|224618
NZ_CP040572.1\|WP_000211937.1\|1072589_1074389_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP040572.1\|WP_000036723.1\|1054265_1055564_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP040572.1\|WP_000059304.1\|1065070_1066525_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354

Protein	Function_ID	Function_description	E-value
NZ_CP040572.1\|WP_012779383.1\|1055623_1056538_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.30872e-104
NZ_CP040572.1\|WP_001071648.1\|1051521_1052313_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
NZ_CP040572.1\|WP_001164582.1\|1062619_1063897_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	7.69151e-30
NZ_CP040572.1\|WP_000210878.1\|1052540_1054178_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP040572.1\|WP_000254738.1\|1051115_1051451_+\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
NZ_CP040572.1\|WP_000987944.1\|1071908_1072274_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	9.8593e-60
NZ_CP040572.1\|WP_001217990.1\|1056534_1057683_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	5.38776e-66
NZ_CP040572.1\|WP_001199973.1\|1059379_1060051_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
NZ_CP040572.1\|WP_001243487.1\|1057916_1058591_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	3.44494e-83
NZ_CP040572.1\|WP_000581937.1\|1050867_1051116_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP040572.1\|WP_001130278.1\|1069716_1070292_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	1.96043e-88
NZ_CP040572.1\|WP_001301644.1\|1067932_1068712_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	1.2806e-65
NZ_CP040572.1\|WP_000039701.1\|1061114_1062593_-\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	1.25899e-108
NZ_CP040572.1\|WP_000109503.1\|1070308_1070569_-\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	1.18571e-41
NZ_CP040572.1\|WP_001301471.1\|1070559_1071831_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	4.44674e-126
NZ_CP040572.1\|WP_000021347.1\|1064215_1065001_+\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.24046e-138
NZ_CP040572.1\|WP_042909427.1\|1058604_1059225_-\|LemA-family-protein	gnl\|CDD\|224618	COG1704, LemA, Uncharacterized conserved protein [Function unknown].	2.13345e-77
NZ_CP040572.1\|WP_000211937.1\|1072589_1074389_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP040572.1\|WP_000036723.1\|1054265_1055564_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP040572.1\|WP_000059304.1\|1065070_1066525_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	4.96301e-83

>NZ_CP040572.1|WP_001199973.1|1059379_1060051_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP040572.1|WP_042909427.1|1058604_1059225_-|LemA-family-protein
MKRDLNTLRIFIVIIFIFNLSGCGYNDIQTYDEQVNASWSEVLNQYQRRADLIPNLVASIKGYSSHERDVLEAVTLARSQANRASSDLQQTPGDEQKLQAWQQAQAQVTRTLGQLTIISERYPELKSQELYQNLMVQLEGSENRIAVARGRYIKAIEQYNVTIRKFPAVLTAKVMDYTPKKNYLPDDVAAVSKAPTIDFSQNANAH
>NZ_CP040572.1|WP_001243487.1|1057916_1058591_-|YgcG-family-protein
MRNFIFLMAFFCSSVFATQIPVPESPKYVNDLTGTLTNSEVNTLTNQIKALTQKNYAQLVVLVVETTGDETIEQYATRVFDSWKPGDKDRDDGVLLLVAWQDHTVRIEIGYGLEGIITDAQSGKIIRNSIIPAFKKGDLAGGLQKGISDIESRLTGNNLATITPTDHPLPFSGWWALLVWAIVLTFISARGYIKTLGVICFAAIVLAFVLPIAGFSGSWGVLAT
>NZ_CP040572.1|WP_001217990.1|1056534_1057683_-|YgcG-family-protein
MRIFLLLLMLCGFQVFAERLPSVTDLTGTLTTEEQTALTQQLQTLEQQNHFQVAVLVTPTTGGKNIKLAASQRYGVYHWKPVGEKRYGEGILILVVWPEGLASMKIGHGLEEMLPPEQAAQIVRYHMQPEFEKNNLFAGLTGGIESIAQFTHIKANLSPLDALANHLFANPQRSLPCLAWTLLMIVAIVVLWLFASRPRRGIWMISMITPMVWFFSFQDDVIIRRVSVVCFSLLLATTCKQRLAVVFNMCRVFPMMLTPKNKNAKVKKQKKTPQVRESGRNSLFVVMLIIIVGWCLVFASNKDIAFISTIIGLIDHFIGPITIAGIVLLIIVAKFTGNLKLGSGEKSNRKTGNRNAHSRSSSRNSFRGGGGSSGGGGSSVRW
>NZ_CP040572.1|WP_012779383.1|1055623_1056538_-|YgcG-family-protein
MIVMRLIFILFTLWCLPGLAQQIAVPELRQQVTDITGTLSTSEQQSLTQQLQDITHKTRAQVAVLVVPSTGDDSIEQYATRVFDSWKLGDKQRNDGILLLVAWEDHAVRIEVGYGLEGVVTDLQAAKIIRDILIPAFKSDDLMGGLTLASENIGALLLNGELPEDRGDYYSINPPIPLSLAVIILLAVLSYFIVFTDPSNLPWITLTGAIYGMVFLYVAEPGPWTNLIVACGMLTPFAIVPLVIFWLIVNKKLRAKYKKLSKDRASRKGSSSSSSGGGSSGGGSGGGFSGGGGSSGGGGASGRW
>NZ_CP040572.1|WP_000036723.1|1054265_1055564_+|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP040572.1|WP_000210878.1|1052540_1054178_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP040572.1|WP_001071648.1|1051521_1052313_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP040572.1|WP_000254738.1|1051115_1051451_+|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP040572.1|WP_000581937.1|1050867_1051116_+|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP040572.1|WP_000039701.1|1061114_1062593_-|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMEKFNIPRHMLFDVQMPGTVLGQITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFIPIESNAKRYDAMNKGIFKALTKHTDVILKKSYEVMHGELGNADSIQSWSNA
>NZ_CP040572.1|WP_001164582.1|1062619_1063897_-|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSTSLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTQPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_CP040572.1|WP_000021347.1|1064215_1065001_+|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANVFIPSFVKDNGETKEMIENQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASQASNYVNGHLLVVDGGYLVR
>NZ_CP040572.1|WP_000059304.1|1065070_1066525_+|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVNCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP040572.1|WP_001301644.1|1067932_1068712_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAHGNSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFASEFVARHIAEWQRQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFITLEQRTEHGLRCCRIRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAELPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NZ_CP040572.1|WP_001130278.1|1069716_1070292_-|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISQIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP040572.1|WP_000109503.1|1070308_1070569_-|ferredoxin-family-protein
MSVARNLWRAADAPHIVPADSVERQMVQRLINACPVGLFSLTPEGDLRVDYHGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_CP040572.1|WP_001301471.1|1070559_1071831_-|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDCATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLARFKTHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDTALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPVLLQRPGWYRTWPALMQDISRDLWDQGDKPVPPLRQLLWRHLRRHGLWNLAGDVIRSVRCL
>NZ_CP040572.1|WP_000987944.1|1071908_1072274_-|6-carboxytetrahydropterin-synthase-QueD
MMSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>NZ_CP040572.1|WP_000211937.1|1072589_1074389_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAATPAPAAEMPGITIISASQTGNARRVAEALRDDLLTAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSVATGVVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQEEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY

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Crispr_ID: NZ_CP040572_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040572_2

1086171-1086383

TypeI-E

I-E

Consensus_repeat	Method
TGTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
TGTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder

3 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP040572_2

>merge|NZ_CP040572|2|1086171-1086383|PILER-CR,CRT,CRISPRCasFinder
TGTGTTCCCCGCGCCAGCGGGGATAAACCGTCACCAAAACAGTGACAAAAACTGTCACCAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCTCATATTCGGATTGATCGTGTGTTTCGGTTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCCCAGGGATTTGTTCAATCCAGCGTGCCGCTGTGTTCCCCGCATCAGCGGGGATAAACCG

>NZ_CP040572|2|1|1086171-1086322|PILER-CR
TGTGTTCCCCGCGCCAGCGGGGATAAACCG	TCACCAAAACAGTGACAAAAACTGTCACCAA
AGTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCATATTCGGATTGATCGTGTGTTTCGGTT
TGTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP040572|2|1|1086171-1086383|CRT
TGTGTTCCCCGCGCCAGCGGGGATAAACCG	TCACCAAAACAGTGACAAAAACTGTCACCAA
AGTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCATATTCGGATTGATCGTGTGTTTCGGTT
TGTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCCAGGGATTTGTTCAATCCAGCGTGCCGC
TGTGTTCCCCGCATCAGCGGGGATAAACCG

>NZ_CP040572|2|2|1086172-1086383|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCACCAAAACAGTGACAAAAACTGTCACCAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCATATTCGGATTGATCGTGTGTTTCGGTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCCAGGGATTTGTTCAATCCAGCGTGCCGCT
GTGTTCCCCGCATCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040572.1\|WP_000039864.1\|1076174_1076909_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP040572.1\|WP_001084082.1\|1080313_1081876_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP040572.1\|WP_000490413.1\|1086464_1087502_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP040572.1\|WP_001295182.1\|1093808_1094570_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP040572.1\|WP_001090366.1\|1088663_1090091_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP040572.1\|WP_000372111.1\|1087753_1088662_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP040572.1\|WP_000246158.1\|1091592_1092303_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP040572.1\|WP_000568934.1\|1092778_1093828_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP040572.1\|WP_001173673.1\|1090090_1090696_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP040572.1\|WP_000206445.1\|1082420_1083476_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP040572.1\|WP_000029325.1\|1081872_1082409_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP040572.1\|WP_000144865.1\|1084861_1085785_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP040572.1\|WP_000517476.1\|1091262_1091574_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP040572.1\|WP_000063176.1\|1085781_1086075_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP040572.1\|WP_001219242.1\|1092302_1092782_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP040572.1\|WP_000281463.1\|1084214_1084865_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP040572.1\|WP_000956458.1\|1077172_1077325_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP040572.1\|WP_001233978.1\|1077516_1080216_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP040572.1\|WP_001246103.1\|1090745_1091069_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP040572.1\|WP_000085058.1\|1083486_1084233_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776

Protein	Function_ID	Function_description	E-value
NZ_CP040572.1\|WP_000039864.1\|1076174_1076909_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	5.85899e-137
NZ_CP040572.1\|WP_001084082.1\|1080313_1081876_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP040572.1\|WP_000490413.1\|1086464_1087502_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP040572.1\|WP_001295182.1\|1093808_1094570_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP040572.1\|WP_001090366.1\|1088663_1090091_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP040572.1\|WP_000372111.1\|1087753_1088662_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP040572.1\|WP_000246158.1\|1091592_1092303_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	6.38982e-120
NZ_CP040572.1\|WP_000568934.1\|1092778_1093828_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP040572.1\|WP_001173673.1\|1090090_1090696_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP040572.1\|WP_000206445.1\|1082420_1083476_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.45802e-155
NZ_CP040572.1\|WP_000029325.1\|1081872_1082409_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	3.2742e-30
NZ_CP040572.1\|WP_000144865.1\|1084861_1085785_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	4.32632e-156
NZ_CP040572.1\|WP_000517476.1\|1091262_1091574_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP040572.1\|WP_000063176.1\|1085781_1086075_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.35543e-65
NZ_CP040572.1\|WP_001219242.1\|1092302_1092782_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP040572.1\|WP_000281463.1\|1084214_1084865_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	5.5854e-93
NZ_CP040572.1\|WP_000956458.1\|1077172_1077325_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NZ_CP040572.1\|WP_001233978.1\|1077516_1080216_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP040572.1\|WP_001246103.1\|1090745_1091069_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.44794e-52
NZ_CP040572.1\|WP_000085058.1\|1083486_1084233_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.00414e-48

>NZ_CP040572.1|WP_000063176.1|1085781_1086075_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>NZ_CP040572.1|WP_000144865.1|1084861_1085785_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFRESPPARRSVDQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEKVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>NZ_CP040572.1|WP_000281463.1|1084214_1084865_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESETFTIECRSFVPELRTGQQLCFNLRANPTICKAGKRHDLLMEAKRQVRGQAEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEV
>NZ_CP040572.1|WP_000085058.1|1083486_1084233_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSAPDLLSAIISRRDYYTDAWWMVAVATTPDAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDVLRNAYQQYQDSFRELKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTINQGPWLSKEEPCTSQE
>NZ_CP040572.1|WP_000206445.1|1082420_1083476_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEEKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTEQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>NZ_CP040572.1|WP_000029325.1|1081872_1082409_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWHEELQEKRGERASLRRSTTVNDVCLTDGFRLFLKNRQIKWQDEPEWRITALALIAALSANVKAIDERLPFAAQLAAVMSKGRFTRLSAVKTPDELLRQLRRVVRLLNGSVNLDSLAEGVFRWCQESDDLLNHHRRHQRPTEFIRIRWALEYYQAGDVDNEQNQ
>NZ_CP040572.1|WP_001084082.1|1080313_1081876_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQSSFAPKDYRRWDDIWEDGLEAEKLREALLSLEHPFQFGPDSPSFMQDFEVLMGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCSHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQAPLWRKLWLNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTDDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQSDALLSLMTTKNYGANYAMWQHPLTPYRVPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLNKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLGKWQKEIWLFARQDFDERVFTNPYEPVDLERVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>NZ_CP040572.1|WP_001233978.1|1077516_1080216_+|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKEGGDGYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLAPELKIPEGSRKNYEKISHSTLGYWLWNYYLSECEELLPSSSLSSRKLTRVIEMWMSITTGHHGRPPDRIDELDNFLPEDKAAARDFLLEIKALFPLIEIPTFWDDDEGVELLKQLSWYISATVVLADWTGSSTRFFPRVAHPMDIKDYWQKTLVQAQNALTVFPPKAETAPFTGINTLFPFIEHPTPLQQKVLDLDISQPGPQLFILEDVTGAGKTEAALILAHRLMAARKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFANSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQESIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPASSLSLFHSRFAFSDRQRIEMETLARFGKEDGSQRAGKVLICTQVLEQSVDCDLDEMISDLAPVDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDAPGDEWFGSAMRNSAYVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFKPGYAANINDYLPEKLSTRLAEESVSLWLATCIAGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRQWCIEQRQDPEMANVILVTDDESCGYSAREGLIGKVD
>NZ_CP040572.1|WP_000956458.1|1077172_1077325_+|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP040572.1|WP_000039864.1|1076174_1076909_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAQLEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKNGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP040572.1|WP_000490413.1|1086464_1087502_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPQSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP040572.1|WP_000372111.1|1087753_1088662_+|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHQNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP040572.1|WP_001090366.1|1088663_1090091_+|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRSRVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGEK
>NZ_CP040572.1|WP_001173673.1|1090090_1090696_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP040572.1|WP_001246103.1|1090745_1091069_+|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLMTVGIMFGALFMWLLG
>NZ_CP040572.1|WP_000517476.1|1091262_1091574_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP040572.1|WP_000246158.1|1091592_1092303_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVYALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGAAITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP040572.1|WP_001219242.1|1092302_1092782_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP040572.1|WP_000568934.1|1092778_1093828_+|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELVELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP040572.1|WP_001295182.1|1093808_1094570_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Crispr_ID: NZ_CP040572_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040572_3

1677292-1677397

Orphan

Consensus_repeat	Method
CCGAGCCGTAGGCCGGATTAGGCGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040572_3

>merge|NZ_CP040572|3|1677292-1677397|CRISPRCasFinder
CCGAGCCGTAGGCCGGATTAGGCGTTCACGCCGCATCCTGTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAACCGAGCCGTAGGCCGGATAAGGCGTT

>NZ_CP040572|3|3|1677292-1677397|CRISPRCasFinder
CCGAGCCGTAGGCCGGATTAGGCGTT	CACGCCGCATCCTGTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAA
CCGAGCCGTAGGCCGGATAAGGCGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040572.1\|WP_000990779.1\|1684295_1685018_-\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	unknown	unknown	gnl\|CDD\|235350
NZ_CP040572.1\|WP_001281251.1\|1685164_1687792_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	unknown	unknown	gnl\|CDD\|235502
NZ_CP040572.1\|WP_000948724.1\|1668608_1669967_+\|glycerol-3-phosphate-transporter	unknown	unknown	gnl\|CDD\|236889
NZ_CP040572.1\|WP_001075155.1\|1677421_1679707_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181649
NZ_CP040572.1\|WP_000857257.1\|1666707_1668336_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|236847
NZ_CP040572.1\|WP_000660231.1\|1673835_1675026_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341042
NZ_CP040572.1\|WP_000332037.1\|1676064_1677195_-\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|181647
NZ_CP040572.1\|WP_001301786.1\|1671271_1672342_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040572.1\|WP_001209872.1\|1665458_1666718_-\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	unknown	unknown	gnl\|CDD\|225617
NZ_CP040572.1\|WP_001295211.1\|1689624_1690248_+\|DUF1175-domain-containing-protein	unknown	unknown	gnl\|CDD\|225774
NZ_CP040572.1\|WP_000876002.1\|1697492_1700342_+\|two-component-system-sensor-histidine-kinase-RcsC	unknown	unknown	gnl\|CDD\|182772
NZ_CP040572.1\|WP_001225855.1\|1696441_1697218_+\|YfaP-family-protein	unknown	unknown	gnl\|CDD\|227021
NZ_CP040572.1\|WP_000301028.1\|1675106_1675757_+\|lipopolysaccharide-kinase-InaA	unknown	unknown	gnl\|CDD\|182136
NZ_CP040572.1\|WP_001263822.1\|1680402_1684155_+\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	unknown	unknown	gnl\|CDD\|182059
NZ_CP040572.1\|WP_000176738.1\|1672805_1673684_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176102
NZ_CP040572.1\|WP_000779084.1\|1669971_1671048_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
NZ_CP040572.1\|WP_001061917.1\|1700541_1701192_-\|transcriptional-regulator-RcsB	unknown	unknown	gnl\|CDD\|182771
NZ_CP040572.1\|WP_001249123.1\|1701208_1703881_-\|phosphotransferase-RcsD	unknown	unknown	gnl\|CDD\|236726
NZ_CP040572.1\|WP_000135039.1\|1675810_1676065_-\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	unknown	unknown	gnl\|CDD\|182668
NZ_CP040572.1\|WP_042355394.1\|1687999_1689628_+\|DUF2138-domain-containing-protein	unknown	unknown	gnl\|CDD\|227030

Protein	Function_ID	Function_description	E-value
NZ_CP040572.1\|WP_000990779.1\|1684295_1685018_-\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	1.1677e-171
NZ_CP040572.1\|WP_000948724.1\|1668608_1669967_+\|glycerol-3-phosphate-transporter	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	0
NZ_CP040572.1\|WP_001075155.1\|1677421_1679707_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
NZ_CP040572.1\|WP_000857257.1\|1666707_1668336_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
NZ_CP040572.1\|WP_000660231.1\|1673835_1675026_+\|MFS-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.20553e-100
NZ_CP040572.1\|WP_000332037.1\|1676064_1677195_-\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
NZ_CP040572.1\|WP_001281251.1\|1685164_1687792_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NZ_CP040572.1\|WP_001209872.1\|1665458_1666718_-\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	gnl\|CDD\|225617	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism].	0
NZ_CP040572.1\|WP_001295211.1\|1689624_1690248_+\|DUF1175-domain-containing-protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	7.99004e-141
NZ_CP040572.1\|WP_000876002.1\|1697492_1700342_+\|two-component-system-sensor-histidine-kinase-RcsC	gnl\|CDD\|182772	PRK10841, PRK10841, two-component system sensor histidine kinase RcsC.	0
NZ_CP040572.1\|WP_001225855.1\|1696441_1697218_+\|YfaP-family-protein	gnl\|CDD\|227021	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown].	3.30839e-153
NZ_CP040572.1\|WP_000301028.1\|1675106_1675757_+\|lipopolysaccharide-kinase-InaA	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	4.41923e-159
NZ_CP040572.1\|WP_001263822.1\|1680402_1684155_+\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
NZ_CP040572.1\|WP_000176738.1\|1672805_1673684_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176102	cd05466, PBP2_LTTR_substrate, The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily. This model and hierarchy represent the the substrate-binding domain of the LysR-type transcriptional regulators that form the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, oxidative stress responses, nodule formation of nitrogen-fixing bacteria, synthesis of virulence factors, toxin production, attachment and secretion, to name a few. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.9401e-45
NZ_CP040572.1\|WP_000779084.1\|1669971_1671048_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
NZ_CP040572.1\|WP_001061917.1\|1700541_1701192_-\|transcriptional-regulator-RcsB	gnl\|CDD\|182771	PRK10840, PRK10840, transcriptional regulator RcsB; Provisional.	2.27775e-154
NZ_CP040572.1\|WP_001249123.1\|1701208_1703881_-\|phosphotransferase-RcsD	gnl\|CDD\|236726	PRK10618, PRK10618, phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional.	0
NZ_CP040572.1\|WP_000135039.1\|1675810_1676065_-\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	1.23742e-52
NZ_CP040572.1\|WP_042355394.1\|1687999_1689628_+\|DUF2138-domain-containing-protein	gnl\|CDD\|227030	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown].	0

>NZ_CP040572.1|WP_000332037.1|1676064_1677195_-|ribonucleotide-diphosphate-reductase-subunit-beta
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL
>NZ_CP040572.1|WP_000135039.1|1675810_1676065_-|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEL
>NZ_CP040572.1|WP_000301028.1|1675106_1675757_+|lipopolysaccharide-kinase-InaA
MAVSAKHDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVTPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>NZ_CP040572.1|WP_000660231.1|1673835_1675026_+|MFS-transporter
MKEKLWTKDFWAITIISFIIFFVFYVLLTLLPIYISDRLHASPDKAGLLVTLFLIAAIVIRPFAGQWVGKYSNKTILVLSSLAFLVVTALYPFCHSIESLLFIRVLHGITFGVITTVKGTISARLIPASRRGEGISFFSLAMGLAMVVGPWIGLNMARWEAFNMAFWLCTGVAAVGIILSLIMTVPPVISHADGSKPKMGFAAMFDRAALPFAMVTFFMTFSYAGVSAFLALYARELNLMSAASNFLLCYAIFLMICRTFTGNVCDKKGPKYVVYPCLLFFTVGLVVLGYTQGSVMMVVSGALIGIGYGSVTPVFQTQIISSVEPHKIGVANSLFFNAMDAGLALGACVMGMMVAHTGYRMIYLLGALLVVVAGGVYALQMKGKSGVALVVAKEIH
>NZ_CP040572.1|WP_000176738.1|1672805_1673684_-|LysR-family-transcriptional-regulator
MTLTQINSLLAVLDYGGFTEASKRLFMTQSAVSQAIAALEQELGVNILLRDRRKAIQLTTAGHRIVQHLRAINREVNAVKEIAEQEKQNPQRTLRLGCFPSVCACILPVVIRYFEIHHPNIKIIPFEENSTAIIDSLQNESIDAGFVHFPVSGMYSVPIYQDKFTVVLPPNHALAKNSTITVEELMGEPLIISKGRYELSIMALFKEKNITPQIKYEFNHPDTAISFIRQGLGIALLPELTLKTIADELCSVPLEPTFYRQISLLAKEKPVEGSPLFLLQMCTEQLVVSGKI
>NZ_CP040572.1|WP_001301786.1|1671271_1672342_-|hypothetical-protein
MPNTSIHLSRCNILQNNKLQPTEIYKESQQTAKLEFFCDEFLKISQSRYGLSTSTDSIANLLAFFTKASDAIDSIKTQKIDVHSYGFVPIRHFVEHVITYKNEFAADYEPYTLTFTRGENNEGILSVESKEGFISQRTINLNEYETAINIINEHVIKENIHNTVQSPTEKYISKINSSDKPYKTSSKESIKSQLYSDQRNIQTCYYILRKNTEWYKYASSEERYDKFKNSSKEIKNTYKQIVQAQKKLNQMKYINKLSGELIDITDKKLAPLINDSFSYTRDFFAYSKQEKNIFTFDNSKFVDPKEKEGLMVQHSNGQLVITGKYCPEGVQTAFTQEQYDKLIRYINIFFTFPKLE
>NZ_CP040572.1|WP_000779084.1|1669971_1671048_+|glycerophosphodiester-phosphodiesterase
MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMDLNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTTDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE
>NZ_CP040572.1|WP_000948724.1|1668608_1669967_+|glycerol-3-phosphate-transporter
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFFYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHQELLQKRNGG
>NZ_CP040572.1|WP_000857257.1|1666707_1668336_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL
>NZ_CP040572.1|WP_001209872.1|1665458_1666718_-|glycerol-3-phosphate-dehydrogenase-subunit-GlpB
MRFDTIIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQAVTDIHSGLESLRQQAPAHPYSLLGPQRVLDLACQAQALIAESGAQLQGSVELPHQRITPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELDLAVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERNGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDQTLRPSQAGQTIENLFTIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ
>NZ_CP040572.1|WP_001075155.1|1677421_1679707_-|ribonucleoside-diphosphate-reductase-subunit-alpha
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKHFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>NZ_CP040572.1|WP_001263822.1|1680402_1684155_+|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC
MRVIFLRKEYLSLLPSMIASLFPANGVAAAIDLCQGYDIKASCHASRQSLSGITQVWSIADGQWLVFSDMTNNASGGAVFLQQGAEFTLSPENETGMTLFANNTVSGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAIDLRVTNAVFRNNIANDGKGGAIYTINNDIYLSDDVFNNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIINNTAFTNNTAEGYGGAIYTNSATAPYLIDISVDDSYSQNGGVLVDENNSAAGYGDGPSSAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVDSIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDKYQNQAELNVGSTQQTFAHSLTGFQNGTLNIDAGGNVTVNQGSFAGTIEGAGQLTIAQNGSYVLAGAQSMALTGDIVVDAGAVLSLEGDAADLAALQDDPQSIVLNGGMLDLSDFSTWQSGTSYKDGLEVSGSSGTVIGSQDVVDLAGGNDMHIGGDGKDGVYVVIDAGDGQVSLANDNQYLGTTQIASGTLMVSDNSQLGYTHYNRQVIFTDKPQESVMEITANVDTRSTTTEHGRDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLQGDVADIFPYASSLWVGDGATFVTGADQDIQSIDATSSGTIDISDGTVLRLTGQDTSVALNASLFNCDGTLVNATDGVTLTGELNTNLETDSLTYLSNVTVNGNLTNTSGAVSLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKVVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVTPPSPPDPDPTPDPDPTQDPDPTPDPEPTPAYQPVLNAKVGGYLNNLRAANQAFMMERRDHAGGDGQTLNLRVIGGDYHYTAAGQLAQHEDTSTVQLSGDLFSGRWGTDGEWMLGIVGGYSDNQGDSRSSMTGTRADNQNHGYAVGLTSSWFQHGKQKQGAWLDNWLQYAWFSNDVSEHEDGVDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANRARVSQSQGDDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDASTISDDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>NZ_CP040572.1|WP_000990779.1|1684295_1685018_-|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase
MNAEKSPVNHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLSYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNPITNTFKLGPGVDVNYMLHTQNK
>NZ_CP040572.1|WP_001281251.1|1685164_1687792_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>NZ_CP040572.1|WP_042355394.1|1687999_1689628_+|DUF2138-domain-containing-protein
MALLSAGVWALQYAGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKINSETIPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFKDDQQDTEATAIASDLLSGKKRWQASFGLEERAAEKTPVRQRIVASARLLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGAAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQTLNKTRPAMVDVIPTDGIVPLYINPQGVAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPIIWQPL
>NZ_CP040572.1|WP_001295211.1|1689624_1690248_+|DUF1175-domain-containing-protein
MRHGLLALICWLCCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANETLKVHDSKWLKSNGLSSQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYVIYHTGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR
>NZ_CP040572.1|WP_001225855.1|1696441_1697218_+|YfaP-family-protein
MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASFSQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPVHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW
>NZ_CP040572.1|WP_000876002.1|1697492_1700342_+|two-component-system-sensor-histidine-kinase-RcsC
MKYLASFRTTLKASRYMFRALALVLWLLIAFSSVFYIVNALHQRESEIRQEFNLSSDQAQRFIQRTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPLFADSDCSAMSNTWRGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMPVERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLGVEQTIRMENFFLPGTLPMGVTILDENGHTLISLTGPESKIKADPRWMQERSWFGYTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQRLTQIICGQQVNFVDVLTSNNTNLQISFVHSRYRNENVAICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIPLYGAQYPQKKGVEGLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQEPTPEDVLITDEVVSKKWQGRAVVTFCRRHIGIPLEKAPGEWVHSVAAPHELPALLARIYLIEMESDDPANALPSTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTVYAERVRKSRES
>NZ_CP040572.1|WP_001061917.1|1700541_1701192_-|transcriptional-regulator-RcsB
MNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVENDIALLNYLSSVTLSPADKD
>NZ_CP040572.1|WP_001249123.1|1701208_1703881_-|phosphotransferase-RcsD
MRQKETTATTRFSLLPGSITRFFLLLIIVLLVTMGVMVQSAVNAWLKDKSYQIVDITHAIQKRVDTWRYVTWQIYDNIAATTSPSSGEGLQETRLKQDVYYLEKPRRKTEALIFGSHDNSTLEMTQRMSTYLDTLWGAENVPWSMYYLNGQDNSLVLISTLPLKDLTSGFKESTVSDIVDSRRAEMLQQANALDERESFSNMRRLAWQNGHYFTLRTTFNQPGHLATVVAFDLPINDLIPPGMPLDSFRLEPDATATGNNDNEKEGTDSVSIHFNSTKIEISSALNSTDMRLVWQVPYGTLLLDTLQNILLPLLLNIGLLALALFGYTTFRHFSSRSTESLPNTAVNNELRILRAINEEIVSLLPLGLLVHDQESNRTVISNKIADHLLPHLNLQNITTMAEQHQGIIQATINNELYEIRMFRSQVAPRTQIFIIRDQDREVLVNKKLKQAQRLYEKNQQGRMTFMKNIGDALKEPAQSLAESAAKLNAPESKQLANQADVLVRLVDEIQLANMLADDSWKSETVLFSVQDLIDEVVPSVLPAIKRKGLQLLINNHLKAHDMRRGDRDALRRILLLLMQYAVTSTQLGKITLEVDQDESSEDRLTFRILDTGEGVSIHEMDNLHFPFINQTQNDRYGKADPLAFWLSDQLARKLGGHLNIKTRDGLGTRYSVHIKMLAADPEVEEEEERLLDDVCVMVDVTSAEIRNIVTRQLENWGATCITPDERLISQDYDIFLTDNPSNLTASGLLLSDDESGVREIGPGQLCVNFNMSNAMQEAVLQLIEVQLAQEEVTESPLGGDENAQLHASGYYALFVDTVPDDVKRLYTEAATSDFAALAQTAHRLKGVFAMLNLVPGKQLCETLEHLIREKDVPGIEKYISDIDSYVKSLL

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Crispr_ID: NZ_CP040572_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040572_4

4603326-4603460

Orphan

Consensus_repeat	Method
GGCCTACACGCTGCAATTTTGTAGGCCGGATAAGCAACGCGCATCCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040572_4

>merge|NZ_CP040572|4|4603326-4603460|CRISPRCasFinder
GGCCTACACGCTGCAATTTTGTAGGCCGGATAAGCAACGCGCATCCGGCATTCAGCGCCTGATGCGACGCTGACGCGTCTTATCTGGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAACGCGCATCCGGCA

>NZ_CP040572|4|4|4603326-4603460|CRISPRCasFinder
GGCCTACACGCTGCAATTTTGTAGGCCGGATAAGCAACGCGCATCCGGCA	TTCAGCGCCTGATGCGACGCTGACGCGTCTTATCT
GGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAACGCGCATCCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040572.1\|WP_000868321.1\|4593714_4594284_-\|T3SS-effector-EspY2	unknown	unknown	unknown
NZ_CP040572.1\|WP_001148407.1\|4597993_4598758_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP040572.1\|WP_001300811.1\|4598843_4599722_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP040572.1\|WP_000035708.1\|4604243_4606595_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP040572.1\|WP_001065380.1\|4617549_4618371_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP040572.1\|WP_001138626.1\|4591827_4593486_+\|HTH-type-transcriptional-regulator-SgrR	unknown	unknown	gnl\|CDD\|184188
NZ_CP040572.1\|WP_000746183.1\|4612870_4615225_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP040572.1\|WP_000525186.1\|4609676_4610336_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP040572.1\|WP_000888654.1\|4603473_4604169_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP040572.1\|WP_000800457.1\|4615277_4616564_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP040572.1\|WP_001248768.1\|4591607_4591739_-\|glucose-uptake-inhibitor-SgrT	unknown	unknown	gnl\|CDD\|374203
NZ_CP040572.1\|WP_001304001.1\|4610753_4611506_-\|UDP-pyrophosphate-phosphatase	unknown	unknown	unknown
NZ_CP040572.1\|WP_000235663.1\|4595614_4597225_+\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	unknown	unknown	gnl\|CDD\|181853
NZ_CP040572.1\|WP_000151715.1\|4601771_4603274_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP040572.1\|WP_000241257.1\|4616563_4617553_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP040572.1\|WP_001117011.1\|4606758_4609665_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP040572.1\|WP_000916267.1\|4597208_4597907_+\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	unknown	unknown	gnl\|CDD\|182716
NZ_CP040572.1\|WP_001200573.1\|4611800_4612616_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP040572.1\|WP_001301693.1\|4594655_4595639_+\|thiamine-ABC-transporter-substrate-binding-subunit	unknown	unknown	gnl\|CDD\|236883
NZ_CP040572.1\|WP_000951872.1\|4600060_4601761_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221

Protein	Function_ID	Function_description	E-value
NZ_CP040572.1\|WP_001148407.1\|4597993_4598758_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.79494e-49
NZ_CP040572.1\|WP_001300811.1\|4598843_4599722_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP040572.1\|WP_000035708.1\|4604243_4606595_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP040572.1\|WP_001065380.1\|4617549_4618371_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	2.27697e-148
NZ_CP040572.1\|WP_001138626.1\|4591827_4593486_+\|HTH-type-transcriptional-regulator-SgrR	gnl\|CDD\|184188	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR.	0
NZ_CP040572.1\|WP_000746183.1\|4612870_4615225_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP040572.1\|WP_000525186.1\|4609676_4610336_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	5.25024e-158
NZ_CP040572.1\|WP_000888654.1\|4603473_4604169_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	3.528e-179
NZ_CP040572.1\|WP_000800457.1\|4615277_4616564_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP040572.1\|WP_001248768.1\|4591607_4591739_-\|glucose-uptake-inhibitor-SgrT	gnl\|CDD\|374203	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT.	0.00111324
NZ_CP040572.1\|WP_000235663.1\|4595614_4597225_+\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	gnl\|CDD\|181853	PRK09433, thiP, thiamine transporter membrane protein; Reviewed.	0
NZ_CP040572.1\|WP_000151715.1\|4601771_4603274_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP040572.1\|WP_000241257.1\|4616563_4617553_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP040572.1\|WP_001117011.1\|4606758_4609665_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP040572.1\|WP_000916267.1\|4597208_4597907_+\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	gnl\|CDD\|182716	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ.	5.93317e-163
NZ_CP040572.1\|WP_001200573.1\|4611800_4612616_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	1.09407e-169
NZ_CP040572.1\|WP_001301693.1\|4594655_4595639_+\|thiamine-ABC-transporter-substrate-binding-subunit	gnl\|CDD\|236883	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional.	0
NZ_CP040572.1\|WP_000951872.1\|4600060_4601761_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0

>NZ_CP040572.1|WP_000151715.1|4601771_4603274_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVKALNTEAKLPCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMTPATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAAEEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLPKLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDALRWNEVYYGFRR
>NZ_CP040572.1|WP_000951872.1|4600060_4601761_+|ribulokinase
MAIAIGLDFGSDSVRALAVDCTTGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIESMEAALKTVLAELSVEQRAAVVGIGVDSTGSTPAPIDADGNVLALRPEFAENPNAMFVLWKDHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIELCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLGWPLEQLAAQHPELKEQIDASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAKVHADIPSAQQKMASAVEKTLQPRSEQAQRFEQLYRRYQQWAMSAEQHYLPTSAPAQAAQAVPTL
>NZ_CP040572.1|WP_001300811.1|4598843_4599722_-|arabinose-operon-transcriptional-regulator-AraC
MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCEEKVNDVAVKLS
>NZ_CP040572.1|WP_001148407.1|4597993_4598758_-|DedA-family-protein
MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAGLGALIGSGELSFWHAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTEHALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGILAGAAIDIPAGMQSGEFKWLLLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLLWLTPLISAIGVVALVVLVRHPLMPVYIDILRKVVGV
>NZ_CP040572.1|WP_000916267.1|4597208_4597907_+|thiamine-ABC-transporter-ATP-binding-protein-ThiQ
MLKLTDITWLYHHLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGMTNELLSGKASASALLGITG
>NZ_CP040572.1|WP_000235663.1|4595614_4597225_+|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP
MATRRQPLIPGWLIPGVSAATLVVAVALAAFLALWWNAPQGDWSAVWQDSYLWHVVRFSFWQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLILPVLVAVFGILSVYGRQGWLASLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQALENIPGEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVTALIFMLCFASFATVLSLGGGPQATTIELAIYQALSYDYDPARAAMLALIQMVCCLGLVLLSQRLSKAIAPGTTLLQGWRDPDDRLHSRICDTMLIVLALLLLLPPLLAVIVDGVNRQLPEVLAQPVLWQALWTSLRIALAAGVLCVVLTMMLLWSSRELRARQKMLAGQALEMSGMLILAMPGIVLATGFFLLLNNTIGLPQSADGIVIFTNALMAIPYALKVLENPMRDITARYSMLCQSLGIEGWSRLKVVELRALKRPLAQALAFACVLSIGDFGVVALFGNDDFRTLPFYLYQQIGSYRSQDGAVTALILLLLCFLLFSVIEKIPGRNVKTD
>NZ_CP040572.1|WP_001301693.1|4594655_4595639_+|thiamine-ABC-transporter-substrate-binding-subunit
MLKKCLPLLLLCTAPVFAKPVLTVYTYDSFAADWGPGPVVKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAKSGVAADAVNVPGGWNNDIFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIPTGNWMYPVANVTLPAGFEKLTKPATTLEFTPAEVAAQRQAWISEWQRAVSR
>NZ_CP040572.1|WP_000868321.1|4593714_4594284_-|T3SS-effector-EspY2
MKVRNPEQISIPASNTTKDPGLTNSQIIRMANLVKKTENMNIFEELWETLRNLFQSDKHSQTAARQILKDAFYFQNSDDYSKYFTGAVDGKARDKLTHWLIKFNELKEYAKDPENMAAKASLSPEGTLCVSFFIGDEAIFTLELQLKKSTRTGGIDLSNAYFNGVVICGIDCLEVDLSNAETNNSRWYD
>NZ_CP040572.1|WP_001138626.1|4591827_4593486_+|HTH-type-transcriptional-regulator-SgrR
MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKATVRQMLVSHLGRSFRQGRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISPLHWRFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIADIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRNSTNQLKIQAFDDFFGYRALIDEVNVWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEGCYYLLFDSRTHRGANQQVRDWVSYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHARTITSEKPAGLESLTLTFYQDHSEHRVIAGIMQQILASHQVTLEIKEISYDQWHEGEIESDIWLNSANFTLPLDFSLFAHLCEVPLLQHCIPIDWQVDAARWRNGEMNLANWCQQLVASKAMVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDPE
>NZ_CP040572.1|WP_001248768.1|4591607_4591739_-|glucose-uptake-inhibitor-SgrT
MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEELMQWEGSHSDY
>NZ_CP040572.1|WP_000888654.1|4603473_4604169_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSIMTADDMVVVSIETGEVVEGAKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP040572.1|WP_000035708.1|4604243_4606595_+|DNA-polymerase-II
MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRTQHILRGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVEGDMHNGAIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPENGDASALDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLVSSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEATKIGRALVQHVNVWWAETLQKQQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYFRETIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF
>NZ_CP040572.1|WP_001117011.1|4606758_4609665_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDALRLIVVTHQ
>NZ_CP040572.1|WP_000525186.1|4609676_4610336_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFRERVPKKQYVTRVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF
>NZ_CP040572.1|WP_001304001.1|4610753_4611506_-|UDP-pyrophosphate-phosphatase
MKVSVPGMPATLLNMSNNDIYKMVSGDKMDMKMNIFQRLWETLRHLFWSDKQTEAYKLLFNFVNKKAGNINASKYFTGAVNENEKEKFIHSLELFNELKTCAKNPDEMVAKGNMSWVAQTFGDIELSVTFFIENKEICTQTLQLHKGPGNLGVDLREAYLPGVDMRDCYLGLKTMKGHNKVLYLEPGWNANLDGATLDGATLDGATVDGATHLYDEVIIINKITPKKIDTEEVATKQSTAEQITDNAIIE
>NZ_CP040572.1|WP_001200573.1|4611800_4612616_-|co-chaperone-DjlA
MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWFANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFRVGKSDNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEELGISRAQFDQFLRMMQGGAQFGGGYQQQSGGGNWQQAQRGPTLEDACNVLGVKPTDDATTIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQQAYELIKQQKGFK
>NZ_CP040572.1|WP_000746183.1|4612870_4615225_+|LPS-assembly-protein-LptD
MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQGDTNDLPVTINANHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVRTVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGENRYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVSIFYSPYLQLPVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEFRYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKVSDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTEAKLLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTLEPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRIYDDAAVERFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRGGIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYASPEYIQATLPKYYSTAEQYKNGISQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWDNDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQNTL
>NZ_CP040572.1|WP_000800457.1|4615277_4616564_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN
>NZ_CP040572.1|WP_000241257.1|4616563_4617553_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLTDRAAMLGLPLTLRPYSPNSPAQPQTTGTLTLLPVALRESVTAGQLAIENGHYVVETLARACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPVLDELRAQGMELNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGRGEADVGSFITALNLAIKMIVNTQ
>NZ_CP040572.1|WP_001065380.1|4617549_4618371_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPFQES

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Crispr_ID: NZ_CP040572_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040572_5

4628227-4628363

Orphan

Consensus_repeat	Method
TGAATCACCAATATTGAAAAT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP040572_5

>merge|NZ_CP040572|5|4628227-4628363|PILER-CR
TTAATCACCAATATTGAAAATGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGTTCCTCACCAATATTGAAAACACGGCGTAGCAAAAAGAAATTTTCAATATTGTTTTATGGATCACCAATATTGAAAGT

>NZ_CP040572|5|2|4628227-4628363|PILER-CR
TTAATCACCAATATTGAAAAT	GTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGTTCC
TCACCAATATTGAAAACACGG	CGTAGCAAAAAGAAATTTTCAATATTGTTTTATGGA
TCACCAATATTGAAAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040572.1\|WP_000787124.1\|4628612_4630127_+\|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter	unknown	unknown	gnl\|CDD\|179568
NZ_CP040572.1\|WP_001160975.1\|4619602_4619917_-\|CcdB-family-protein	unknown	unknown	gnl\|CDD\|376629
NZ_CP040572.1\|WP_000125566.1\|4619919_4620153_-\|antitoxin	unknown	unknown	gnl\|CDD\|227619
NZ_CP040572.1\|WP_000349922.1\|4631428_4632646_+\|L-carnitine-CoA-transferase	unknown	unknown	gnl\|CDD\|179589
NZ_CP040572.1\|WP_000333125.1\|4635881_4636277_-\|carnitine-metabolism-transcriptional-regulator-CaiF	unknown	unknown	gnl\|CDD\|183154
NZ_CP040572.1\|WP_001183177.1\|4623402_4624734_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
NZ_CP040572.1\|WP_000543582.1\|4641380_4642202_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
NZ_CP040572.1\|WP_001303785.1\|4634381_4635167_+\|crotonobetainyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|179599
NZ_CP040572.1\|WP_000624372.1\|4620238_4620718_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP040572.1\|WP_000692204.1\|4627368_4628139_-\|electron-transfer-flavoprotein-FixA	unknown	unknown	gnl\|CDD\|179569
NZ_CP040572.1\|WP_001287748.1\|4625075_4626362_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182273
NZ_CP040572.1\|WP_000122894.1\|4635172_4635763_+\|carnitine-operon-protein-CaiE	unknown	unknown	gnl\|CDD\|184189
NZ_CP040572.1\|WP_001301863.1\|4632719_4634273_+\|crotonobetaine/carnitine-CoA-ligase	unknown	unknown	gnl\|CDD\|181195
NZ_CP040572.1\|WP_000600700.1\|4622764_4623295_-\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	unknown	unknown	gnl\|CDD\|234852
NZ_CP040572.1\|WP_000347117.1\|4630157_4631300_+\|crotonobetainyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|179566
NZ_CP040572.1\|WP_001126371.1\|4636537_4639759_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP040572.1\|WP_000377184.1\|4620909_4622772_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	unknown	unknown	gnl\|CDD\|235131
NZ_CP040572.1\|WP_000597260.1\|4639776_4640925_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_CP040572.1\|WP_000203741.1\|4624791_4625079_-\|ferredoxin-like-protein-FixX	unknown	unknown	gnl\|CDD\|185346
NZ_CP040572.1\|WP_001091483.1\|4626412_4627354_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|235120

Protein	Function_ID	Function_description	E-value
NZ_CP040572.1\|WP_000787124.1\|4628612_4630127_+\|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter	gnl\|CDD\|179568	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter.	0
NZ_CP040572.1\|WP_001160975.1\|4619602_4619917_-\|CcdB-family-protein	gnl\|CDD\|376629	pfam01845, CcdB, CcdB protein.	6.75893e-37
NZ_CP040572.1\|WP_000125566.1\|4619919_4620153_-\|antitoxin	gnl\|CDD\|227619	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only].	2.77856e-23
NZ_CP040572.1\|WP_000349922.1\|4631428_4632646_+\|L-carnitine-CoA-transferase	gnl\|CDD\|179589	PRK03525, PRK03525, L-carnitine CoA-transferase.	0
NZ_CP040572.1\|WP_000333125.1\|4635881_4636277_-\|carnitine-metabolism-transcriptional-regulator-CaiF	gnl\|CDD\|183154	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF.	1.42176e-74
NZ_CP040572.1\|WP_001183177.1\|4623402_4624734_-\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.37981e-58
NZ_CP040572.1\|WP_000543582.1\|4641380_4642202_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	7.8312e-142
NZ_CP040572.1\|WP_001303785.1\|4634381_4635167_+\|crotonobetainyl-CoA-hydratase	gnl\|CDD\|179599	PRK03580, PRK03580, crotonobetainyl-CoA hydratase.	1.73024e-178
NZ_CP040572.1\|WP_000624372.1\|4620238_4620718_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.59192e-126
NZ_CP040572.1\|WP_000692204.1\|4627368_4628139_-\|electron-transfer-flavoprotein-FixA	gnl\|CDD\|179569	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed.	6.8619e-170
NZ_CP040572.1\|WP_001287748.1\|4625075_4626362_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182273	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.	0
NZ_CP040572.1\|WP_000122894.1\|4635172_4635763_+\|carnitine-operon-protein-CaiE	gnl\|CDD\|184189	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.	2.91191e-141
NZ_CP040572.1\|WP_001301863.1\|4632719_4634273_+\|crotonobetaine/carnitine-CoA-ligase	gnl\|CDD\|181195	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated.	0
NZ_CP040572.1\|WP_000600700.1\|4622764_4623295_-\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	gnl\|CDD\|234852	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF.	9.50739e-133
NZ_CP040572.1\|WP_000347117.1\|4630157_4631300_+\|crotonobetainyl-CoA-dehydrogenase	gnl\|CDD\|179566	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated.	0
NZ_CP040572.1\|WP_001126371.1\|4636537_4639759_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP040572.1\|WP_000377184.1\|4620909_4622772_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0
NZ_CP040572.1\|WP_000597260.1\|4639776_4640925_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_CP040572.1\|WP_000203741.1\|4624791_4625079_-\|ferredoxin-like-protein-FixX	gnl\|CDD\|185346	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional.	1.84173e-69
NZ_CP040572.1\|WP_001091483.1\|4626412_4627354_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|235120	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein.	0

>NZ_CP040572.1|WP_000692204.1|4627368_4628139_-|electron-transfer-flavoprotein-FixA
MKIITCYKCVPDEQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAAWSEQQVAAPKQRERQRIVIEGDGEEQIAAFAENLRKVI
>NZ_CP040572.1|WP_001091483.1|4626412_4627354_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNTFSQVWVFSDTPSRLPELMNGAQALANQINAFVLNDADGAQAIQLGANHVWKLNGKPDDRMIEDYASVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLKAAVSNDASTVSVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPDASRTGETHTVEWQAPAVAITRTATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALAR
>NZ_CP040572.1|WP_001287748.1|4625075_4626362_-|FAD-dependent-oxidoreductase
MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFAESAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTNVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDMRMYQKLPAFLDNPRMFSGYPELAVGVARDLFTIDGSAPELMRKKILRHGKKVGFINLIKDGMKGVTVL
>NZ_CP040572.1|WP_000203741.1|4624791_4625079_-|ferredoxin-like-protein-FixX
MTSPVNVDVKLGVNKFNVDEEHPHIVVKADADKQALELLVKACPAGLYKKQDDGSVRFDYAGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG
>NZ_CP040572.1|WP_001183177.1|4623402_4624734_-|MFS-transporter
MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYILVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG
>NZ_CP040572.1|WP_000600700.1|4622764_4623295_-|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF
MILIIYAHPYPHHSHANKRMFEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQARHYKQRLLEWQEAHHG
>NZ_CP040572.1|WP_000377184.1|4620909_4622772_-|glutathione-regulated-potassium-efflux-system-protein-KefC
MDSHTLVQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAEIGVVLMLFIIGLELDPQRLWKLRAAVFGGGALQMVICGGLLGLFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAIPLVAMIPLLAASSASTTMGAFALSALKVAGALVLVVLLGRYVTRPALRFVARSGLREVFSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLIENPLRIVILLLGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQGSEFAFVVFGAAQMANVLEPEWAKSLTLAVALSMAATPILLVILNRLEQSSTEEAREADEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYICLRQAGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSS
>NZ_CP040572.1|WP_000624372.1|4620238_4620718_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGRHTRESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR
>NZ_CP040572.1|WP_000125566.1|4619919_4620153_-|antitoxin
MTAKRTTQSVTVTVDRELVNRARDAGLNMSATLTVALNAELKKHAATRWREENAEAIAALNQLADETGCFSDEYRSF
>NZ_CP040572.1|WP_001160975.1|4619602_4619917_-|CcdB-family-protein
MQFTVYRSRSRNAAFPFVIDVTSDIIGVINRRIVIPLTPIERFSRIRPPERLNPILLLVDGKEYVLMTHETATVPVNALGTKFCDASAHRTLIKGALDFMLDGI
>NZ_CP040572.1|WP_000787124.1|4628612_4630127_+|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter
MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFLWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVMGLTASTWILWTVLGSNTLLLIDKNIINIPNLIEQYGVARAIIETWAALPLSTATMWGFFILCFIATVTLVNACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQNWKD
>NZ_CP040572.1|WP_000347117.1|4630157_4631300_+|crotonobetainyl-CoA-dehydrogenase
MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR
>NZ_CP040572.1|WP_000349922.1|4631428_4632646_+|L-carnitine-CoA-transferase
MDHLPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGLTATTAALAALHKARETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMSKGKDPYYAGCGLYKCADGYIVMELVGITQIEECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLAAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKVED
>NZ_CP040572.1|WP_001301863.1|4632719_4634273_+|crotonobetaine/carnitine-CoA-ligase
MDIIGGQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQKYRATITECIPMMIRTLMVQPPSANDRQHRLREVMFYLNLSEQEKDTFCERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYDAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFIDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK
>NZ_CP040572.1|WP_001303785.1|4634381_4635167_+|crotonobetainyl-CoA-hydratase
MSESLHLTRNGSILEITLDRPKANAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGIVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEESYSYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKGR
>NZ_CP040572.1|WP_000122894.1|4635172_4635763_+|carnitine-operon-protein-CaiE
MSYYAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYTDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEENRPRLQGTTDVTPKR
>NZ_CP040572.1|WP_000333125.1|4635881_4636277_-|carnitine-metabolism-transcriptional-regulator-CaiF
MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR
>NZ_CP040572.1|WP_001126371.1|4636537_4639759_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNAEFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK
>NZ_CP040572.1|WP_000597260.1|4639776_4640925_-|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTAK
>NZ_CP040572.1|WP_000543582.1|4641380_4642202_-|4-hydroxy-tetrahydrodipicolinate-reductase
MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAIKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKENGLFDMRDVLDLNNL

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Crispr_ID: NZ_CP040572_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040572_6

4833365-4833514

Orphan

Consensus_repeat	Method
TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040572_6

>merge|NZ_CP040572|6|4833365-4833514|CRISPRCasFinder
TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAATGCTGTTATTGTCGGATGCGGCATGAACGCCTTATCCGACCTACACAGCACCGAACTCGTAGGCCTGATAAGACGCG

>NZ_CP040572|6|5|4833365-4833514|CRISPRCasFinder
TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	CAAGCGTCGCATCAGGCAATGCTGTTATTGTCGGATGCGGCA
TGAACGCCTTATCCGACCTACACAGCACCGAACTCGTAGGCCTGATAAGACGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040572.1\|WP_001059397.1\|4838423_4838927_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP040572.1\|WP_000500712.1\|4843731_4844445_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|183714
NZ_CP040572.1\|WP_085948178.1\|4822822_4824036_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP040572.1\|WP_000583470.1\|4842470_4842923_-\|YhcH/YjgK/YiaL-family-protein	unknown	unknown	gnl\|CDD\|225345
NZ_CP040572.1\|WP_000012925.1\|4839550_4840555_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587
NZ_CP040572.1\|WP_001295681.1\|4829367_4830450_-\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
NZ_CP040572.1\|WP_000397144.1\|4831816_4833328_+\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_CP040572.1\|WP_000079623.1\|4837034_4838231_-\|DUF898-domain-containing-protein	unknown	unknown	gnl\|CDD\|226719
NZ_CP040572.1\|WP_000083142.1\|4824235_4826185_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271184
NZ_CP040572.1\|WP_001301643.1\|4827704_4829207_+\|DUF853-domain-containing-protein	unknown	unknown	gnl\|CDD\|283518
NZ_CP040572.1\|WP_000786399.1\|4833681_4834125_+\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
NZ_CP040572.1\|WP_000416407.1\|4834124_4836980_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_CP040572.1\|WP_000584114.1\|4830449_4831550_-\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|185075
NZ_CP040572.1\|WP_000256678.1\|4843067_4843661_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP040572.1\|WP_001301967.1\|4826555_4827575_+\|NADPH-dependent-aldehyde-reductase-Ahr	unknown	unknown	gnl\|CDD\|176186
NZ_CP040572.1\|WP_001046858.1\|4822262_4822640_+\|DUF4160-domain-containing-protein	unknown	unknown	gnl\|CDD\|379344
NZ_CP040572.1\|WP_001261097.1\|4821808_4822141_+\|NIPSNAP-family-protein	unknown	unknown	gnl\|CDD\|311781
NZ_CP040572.1\|WP_000036491.1\|4840611_4842348_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040572.1\|WP_000002953.1\|4838972_4839389_-\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|236876
NZ_CP040572.1\|WP_000588536.1\|4820337_4820805_+\|DUF1643-domain-containing-protein	unknown	unknown	gnl\|CDD\|226783

Protein	Function_ID	Function_description	E-value
NZ_CP040572.1\|WP_001059397.1\|4838423_4838927_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.52162e-19
NZ_CP040572.1\|WP_000500712.1\|4843731_4844445_+\|SDR-family-oxidoreductase	gnl\|CDD\|183714	PRK12742, PRK12742, SDR family oxidoreductase.	2.19644e-150
NZ_CP040572.1\|WP_085948178.1\|4822822_4824036_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.21825e-157
NZ_CP040572.1\|WP_000012925.1\|4839550_4840555_+\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
NZ_CP040572.1\|WP_001295681.1\|4829367_4830450_-\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
NZ_CP040572.1\|WP_000397144.1\|4831816_4833328_+\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_CP040572.1\|WP_000079623.1\|4837034_4838231_-\|DUF898-domain-containing-protein	gnl\|CDD\|226719	COG4269, COG4269, Predicted membrane protein [Function unknown].	5.35185e-152
NZ_CP040572.1\|WP_000083142.1\|4824235_4826185_-\|site-specific-integrase	gnl\|CDD\|271184	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain containing six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	3.00603e-64
NZ_CP040572.1\|WP_001301643.1\|4827704_4829207_+\|DUF853-domain-containing-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
NZ_CP040572.1\|WP_000786399.1\|4833681_4834125_+\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	5.53743e-66
NZ_CP040572.1\|WP_000416407.1\|4834124_4836980_+\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP040572.1\|WP_000584114.1\|4830449_4831550_-\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
NZ_CP040572.1\|WP_000256678.1\|4843067_4843661_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	9.63528e-10
NZ_CP040572.1\|WP_001301967.1\|4826555_4827575_+\|NADPH-dependent-aldehyde-reductase-Ahr	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	5.44918e-169
NZ_CP040572.1\|WP_001046858.1\|4822262_4822640_+\|DUF4160-domain-containing-protein	gnl\|CDD\|379344	pfam13711, DUF4160, Domain of unknown function (DUF4160).	8.71141e-09
NZ_CP040572.1\|WP_001261097.1\|4821808_4822141_+\|NIPSNAP-family-protein	gnl\|CDD\|311781	pfam07978, NIPSNAP, NIPSNAP. Members of this family include many hypothetical proteins. It also includes members of the NIPSNAP family which have putative roles in vesicular transport. This domain is often found in duplicate.	3.32232e-05
NZ_CP040572.1\|WP_000583470.1\|4842470_4842923_-\|YhcH/YjgK/YiaL-family-protein	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	3.50239e-70
NZ_CP040572.1\|WP_000002953.1\|4838972_4839389_-\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	4.50628e-69
NZ_CP040572.1\|WP_000588536.1\|4820337_4820805_+\|DUF1643-domain-containing-protein	gnl\|CDD\|226783	COG4333, COG4333, Uncharacterized protein conserved in bacteria [Function unknown].	1.3168e-96

>NZ_CP040572.1|WP_000397144.1|4831816_4833328_+|leucyl-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE
>NZ_CP040572.1|WP_000584114.1|4830449_4831550_-|LPS-export-ABC-transporter-permease-LptF
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
>NZ_CP040572.1|WP_001295681.1|4829367_4830450_-|LPS-export-ABC-transporter-permease-LptG
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
>NZ_CP040572.1|WP_001301643.1|4827704_4829207_+|DUF853-domain-containing-protein
MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGIAQAGTASEKLLARLKNIDVNDWQPHANPVVVWDIFGEKGHSVRATVSDLGPLLLVRLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDEVDRESAYEMLQKGFQASTEQQNNPPAKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR
>NZ_CP040572.1|WP_001301967.1|4826555_4827575_+|NADPH-dependent-aldehyde-reductase-Ahr
MSMIKSYAAKEAGGELEVYEYDPGELRPQDVEVQVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDACISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVNSRDPQALKALSGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLPVPAFTLIAGDRSVSGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIKHVRDGKARYRVVLKADF
>NZ_CP040572.1|WP_000083142.1|4824235_4826185_-|site-specific-integrase
MSQRYKLYRRTSGIYVVRISVPQRFRRYAGQCEIHTSTGTHDLHEAKQKSALLLAVWYQTLQEYEQLDYRTLSDCAPLLAGEGMISLSNFAQSIELPISQLIREVVNRNLPVFWLATGQFGFYVDEFNAVEREPGAKREKQSDDEKDQPKEVIILNSAFELGIESFANGYLRPFNPRHTLDCLLSAGVSEGEAAFRTSGDNQSGGWFFDLPGVDITADSLLISKVHAEGLRLTWLVKTTPPAVSIHPAVPLVAPVIANEYVHRKHYNENLSWLREEYLKHRRKGKVSEAALRDIRYYFDLMIEVMGDIQLEDFDRDFLRAYESKLRTIPANRNLMKGKHGVKTLDELIAKAAECGDKLMTEESVKKYINGLYGAMEWAVDDGKFLKSPCDNFFPPDDKGEREQDHTDIFEPHEIKAIFSQPWFVAGTVERNAQGRFHQYCPFHYWAPLLGLMTGARVNEIAQLMLDDVLADDGVYYLNLESDSENGKKLKNANSRRKIPVHSTLIELGFIEYVDALKAAGYDRLFPELKPHKTKGYGRPVSAWFNESLLAGRLKLERDRSKSFHSFRHSVSTLLKEKGVSSELRGQLLGHVRGKTETEVRYSKDLKPVHMVEVVEKIDFSLPEIARFNIPDGLDAVRDALRRKRGKQTG
>NZ_CP040572.1|WP_085948178.1|4822822_4824036_-|IS3-family-transposase
MTKNTRFSPEVRQRAIRMVLESQDEYDSQWAAICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTSAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKKLMPLLDKLREQYGVGPVCSELHIAPSTYYHCQQQRHHPDKRSARAQHDDWLKREIQRVYDENHQVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTIHHSDKGSQYVSLAYTERLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLGRLGHTPPAEAEKAYYASIGNDDLAA
>NZ_CP040572.1|WP_001046858.1|4822262_4822640_+|DUF4160-domain-containing-protein
MNLDEEFYELQKLFAQKDLLTEKRRSSGGGFMEILLVKRQNMKIKIYQEKGHQLPHIHIDYGKQAHAASYAIQSGDRIEGDLPKKYDSDVSSWLGRNRDKILEIWNALQAGAPYEPLIAELTGGV
>NZ_CP040572.1|WP_001261097.1|4821808_4822141_+|NIPSNAP-family-protein
MRTVEILQYTLRKGSGAAFHAIMQEISVPLHQSHGIDVVSFGNSLDDLDCYYLIRAFDSAKSMTAVLDAFYASADWRSGPREDIIGSIENCIKTVISLPSESVKGLRMQS
>NZ_CP040572.1|WP_000588536.1|4820337_4820805_+|DUF1643-domain-containing-protein
MIKDAIFSPCGKYRYSLSRVWDESKPYTLFIGLNPSYADAEKDDRTLSRCISFAKSWGYGGVYMANLFAFVHTQRHEMMKASDPIGKDNDSHLIRLVSGAGLVVAAWGNEGRHLKRSTTVRQLLPESTMCFVLNATGEPKHPLYMKNDSVLIPLG
>NZ_CP040572.1|WP_000786399.1|4833681_4834125_+|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTSFADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK
>NZ_CP040572.1|WP_000416407.1|4834124_4836980_+|valine--tRNA-ligase
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRNEEEVRKENNLGADVALRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVLPADDKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>NZ_CP040572.1|WP_000079623.1|4837034_4838231_-|DUF898-domain-containing-protein
MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLPWALMKCKRYLYANMEVNGQRFSYGITGGNVFFSCLVFVFFYFAILMTVSADMPLIGCVLTLSLLVLLIFMAAKGLRYQALMTSLNGVRFSFNCSMKGVWWVTFFLPILMAIGMGTVFFISTKMLHANSSSSVIVSVVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSFGIHRFKVKLDTAYCIKYAILAFLALLPFLAVAGYIIFDQILNAYDSSVYANDDIENLQQFMEMQRKMIIAQLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRSTLTYHGMLYRMCALVVISGITGGLAYPLLKIWMIDWQAKNTYLLGDLDDLPLINKEEQPDKGFLASISRGIMPSLPFL
>NZ_CP040572.1|WP_001059397.1|4838423_4838927_+|GNAT-family-N-acetyltransferase
MNNIAPQSPVMRRLTLQDNPAIARVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEYEGEVVGGGGIAPLAGSESDICELQKMYFLPAIRGKGLAKKLALKAMEEAREMGFKRCYLETTAFLKEAIGLYEHLGFQHIDYALGCTGHVDCEVRMLREL
>NZ_CP040572.1|WP_000002953.1|4838972_4839389_-|ribonuclease-E-inhibitor-RraB
MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGVRH
>NZ_CP040572.1|WP_000012925.1|4839550_4840555_+|ornithine-carbamoyltransferase
MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKPFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLRDYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSK
>NZ_CP040572.1|WP_000036491.1|4840611_4842348_-|hypothetical-protein
MSKISDLNYSQHITLADNFKQKSEVLNTWRVGMNNFARNAGGQDNTRNILNPKTFLEFLVKIFTLGYVDFSKRSNEAGRNMMAHIESSSYIKNNDGSEIMKFVMNNPEGERADSPKVIIEISLSTITTMGTRQGHTAIIFPQPDGSTNRYERKSFERKDESSLHLITNKVLACYQREANKEIARLLNNHQKLNNLQKLNNLQKLNNIQKLNNIQELNNSQELNNSQELNNSQDLKNSQVSCKGSVDFTITDLLEKSLNNALLAIRNEHLLLMPHVCSESISYLLGENGILEEIDKLYELNDHGIDNDKEGNNEINDIMINLSHILIESLDDAKVNLTPVIHSMLMTFLELPYNNDVKILEWCFNKSMQYFDDSAKIEHACSVINHINFRRDQSKVAETLFFNLDKEPYKNSPELQELIWKKLVVYVNDFNLSNREKTYLIQRIFNNVESLFNKVPVSILVNDIFMNDFFMKNTEMINWYFPRLLKSYEDEKIYFDKLGYNFNNKESNEEIMKNQPKDVIEEKLNNELKLRFRMMQTILKSEVNVSPFIDQQRLNTLNPPENLRIAIEKFGWKKKTITA
>NZ_CP040572.1|WP_000583470.1|4842470_4842923_-|YhcH/YjgK/YiaL-family-protein
MIIGNIHNLQPWLPQELRQAIEHIKAHVTAETPKGKHDIEGNRLFYLISEDMTEPYEARRAEYHARYLDIQIVLKGQEGMTFSTQPAGTPDTDWLADKDIAFLPEGVDEKTVILNEGDFVVFYPGEVHKPLCAVGAPAQVRKAVVKMLMA
>NZ_CP040572.1|WP_000256678.1|4843067_4843661_-|TetR/AcrR-family-transcriptional-regulator
MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSKAGLFSRVLNEYVGTEAIPLVDILRDDRPVGECLAEVLKEAARRYSQNGGCAGCMVLEGIHSHDPQARDIAVQYYHAAETAIYDYIARLHPQSAQCVTDFMSTVMSGLSAKAREGHSLEQLCATAALAGEAIKTILKE
>NZ_CP040572.1|WP_000500712.1|4843731_4844445_+|SDR-family-oxidoreductase
MGAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVFTDSADRDAVIDVVRKSGALDILVVNAGIGVFGDALELNADDIDRLFKINIHAPYHASVEAARQMPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGPMRDMLHSFMAIKRHGQPEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040572_5	5.1\|4628248\|42\|NZ_CP040572\|PILER-CR	4628248-4628289	42	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141084-141125	0	1.0
NZ_CP040572_2	2.1\|1086201\|31\|NZ_CP040572\|PILER-CR,CRT	1086201-1086231	31	MK047640	Phage NV18, complete genome	15646-15676	1	0.968
NZ_CP040572_2	2.4\|1086201\|32\|NZ_CP040572\|CRISPRCasFinder	1086201-1086232	32	MK047640	Phage NV18, complete genome	15645-15676	1	0.969
NZ_CP040572_2	2.1\|1086201\|31\|NZ_CP040572\|PILER-CR,CRT	1086201-1086231	31	MF417881	Uncultured Caudovirales phage clone 7AX_3, partial genome	2718-2748	2	0.935
NZ_CP040572_2	2.4\|1086201\|32\|NZ_CP040572\|CRISPRCasFinder	1086201-1086232	32	MF417881	Uncultured Caudovirales phage clone 7AX_3, partial genome	2718-2749	2	0.938
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	101196-101230	2	0.943
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	165464-165498	3	0.914
NZ_CP040572_5	5.2\|4628311\|36\|NZ_CP040572\|PILER-CR	4628311-4628346	36	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141031-141066	3	0.917
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	14239-14273	5	0.857
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	56080-56114	5	0.857
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	6804-6838	6	0.829
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	208981-209015	6	0.829
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	219475-219509	6	0.829
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	210309-210343	6	0.829
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	191264-191298	6	0.829
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	30177-30211	6	0.829
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	170-204	6	0.829
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_AP023209	Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence	88-122	6	0.829
NZ_CP040572_2	2.3\|1086323\|31\|NZ_CP040572\|CRT	1086323-1086353	31	NC_015512	Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY02, complete sequence	90200-90230	7	0.774
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	87137-87171	7	0.8
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	138033-138067	7	0.8
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	43-77	7	0.8
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3372-3406	7	0.8
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	208887-208921	7	0.8
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	42-76	7	0.8
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3371-3405	7	0.8
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	219381-219415	7	0.8
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	42-76	7	0.8
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3371-3405	7	0.8
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	210215-210249	7	0.8
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	42-76	7	0.8
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3371-3405	7	0.8
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	191170-191204	7	0.8
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	27246-27280	7	0.8
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	18350-18384	7	0.8
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	15018-15052	7	0.8
NZ_CP040572_2	2.1\|1086201\|31\|NZ_CP040572\|PILER-CR,CRT	1086201-1086231	31	NC_011370	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence	102901-102931	8	0.742
NZ_CP040572_2	2.1\|1086201\|31\|NZ_CP040572\|PILER-CR,CRT	1086201-1086231	31	NZ_CP032697	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525a, complete sequence	313484-313514	8	0.742
NZ_CP040572_2	2.1\|1086201\|31\|NZ_CP040572\|PILER-CR,CRT	1086201-1086231	31	NZ_CP049249	Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence	984473-984503	8	0.742
NZ_CP040572_2	2.6\|1086323\|32\|NZ_CP040572\|CRISPRCasFinder	1086323-1086354	32	NC_015512	Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY02, complete sequence	90200-90231	8	0.75
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	MT230402	Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence	262-315	8	0.852
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	12103-12156	8	0.852
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	41406-41459	8	0.852
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	61916-61950	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4114-4148	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229148-229182	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229249-229283	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229350-229384	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229451-229485	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	203852-203886	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	204038-204072	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	204131-204165	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4113-4147	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239642-239676	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239743-239777	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239844-239878	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239945-239979	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	214346-214380	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	214532-214566	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	214625-214659	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4113-4147	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230554-230588	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230655-230689	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230756-230790	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230857-230891	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	205180-205214	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	205366-205400	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	205459-205493	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4113-4147	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211524-211558	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211625-211659	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211726-211760	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211827-211861	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	186135-186169	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	186321-186355	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	186414-186448	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	14272-14306	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	6744-6778	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7392-7426	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	83590-83624	8	0.771
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84216-84250	8	0.771
NZ_CP040572_2	2.4\|1086201\|32\|NZ_CP040572\|CRISPRCasFinder	1086201-1086232	32	NC_011370	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence	102900-102931	9	0.719
NZ_CP040572_2	2.4\|1086201\|32\|NZ_CP040572\|CRISPRCasFinder	1086201-1086232	32	NZ_CP032697	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525a, complete sequence	313483-313514	9	0.719
NZ_CP040572_2	2.4\|1086201\|32\|NZ_CP040572\|CRISPRCasFinder	1086201-1086232	32	NZ_CP049249	Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence	984472-984503	9	0.719
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	386558-386592	9	0.743
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4013-4047	9	0.743
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4012-4046	9	0.743
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4012-4046	9	0.743
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4012-4046	9	0.743
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	13988-14022	9	0.743
NZ_CP040572_4	4.1\|4603376\|35\|NZ_CP040572\|CRISPRCasFinder	4603376-4603410	35	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	41415-41449	9	0.743
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229441-229494	10	0.815
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239935-239988	10	0.815
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7383-7436	10	0.815
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84207-84260	10	0.815
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	87127-87180	10	0.815
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230847-230900	10	0.815
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211817-211870	10	0.815
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4105-4158	11	0.796
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3363-3416	11	0.796
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4104-4157	11	0.796
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3362-3415	11	0.796
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4104-4157	11	0.796
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3362-3415	11	0.796
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4104-4157	11	0.796
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3362-3415	11	0.796
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31242-31295	11	0.796
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	34-87	12	0.778
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4004-4057	12	0.778
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229239-229292	12	0.778
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229340-229393	12	0.778
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	33-86	12	0.778
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4003-4056	12	0.778
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239733-239786	12	0.778
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239834-239887	12	0.778
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	33-86	12	0.778
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4003-4056	12	0.778
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230645-230698	12	0.778
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230746-230799	12	0.778
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	33-86	12	0.778
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4003-4056	12	0.778
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211615-211668	12	0.778
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211716-211769	12	0.778
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	15008-15061	12	0.778
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	18340-18393	12	0.778
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	30167-30220	13	0.759
NZ_CP040572_3	3.1\|1677318\|54\|NZ_CP040572\|CRISPRCasFinder	1677318-1677371	54	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	160-213	14	0.741

1. spacer 5.1|4628248|42|NZ_CP040572|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 0, identity: 1.0

gtcacacgcagataaatccaactttcaatattgttaagttcc	CRISPR spacer
gtcacacgcagataaatccaactttcaatattgttaagttcc	Protospacer
******************************************

2. spacer 2.1|1086201|31|NZ_CP040572|PILER-CR,CRT matches to MK047640 (Phage NV18, complete genome) position: , mismatch: 1, identity: 0.968

tcaccaaaacagtgacaaaaactgtcaccaa	CRISPR spacer
tcaccaaaacagtgacaaaaagtgtcaccaa	Protospacer
********************* *********

3. spacer 2.4|1086201|32|NZ_CP040572|CRISPRCasFinder matches to MK047640 (Phage NV18, complete genome) position: , mismatch: 1, identity: 0.969

tcaccaaaacagtgacaaaaactgtcaccaaa	CRISPR spacer
tcaccaaaacagtgacaaaaagtgtcaccaaa	Protospacer
********************* **********

4. spacer 2.1|1086201|31|NZ_CP040572|PILER-CR,CRT matches to MF417881 (Uncultured Caudovirales phage clone 7AX_3, partial genome) position: , mismatch: 2, identity: 0.935

tcaccaaaacagtgacaaaaactgtcaccaa	CRISPR spacer
tcaccaaatcagtgacaaaaagtgtcaccaa	Protospacer
******** ************ *********

5. spacer 2.4|1086201|32|NZ_CP040572|CRISPRCasFinder matches to MF417881 (Uncultured Caudovirales phage clone 7AX_3, partial genome) position: , mismatch: 2, identity: 0.938

tcaccaaaacagtgacaaaaactgtcaccaaa	CRISPR spacer
tcaccaaatcagtgacaaaaagtgtcaccaaa	Protospacer
******** ************ **********

6. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 2, identity: 0.943

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
ttcagcgcctgatgcgacgctggcgcgtcttatca	Protospacer
**********************.***********

7. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 3, identity: 0.914

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
tgtaacgcctgatgcgacgctgacgcgtcttatct	Protospacer
* .*.******************************

8. spacer 5.2|4628311|36|NZ_CP040572|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 3, identity: 0.917

acggcgtagcaaaaagaaattttcaatattgtttta	CRISPR spacer
atggcgtagaaaaaagaaattttcaatattgcttta	Protospacer
*.******* *********************.****

9. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 5, identity: 0.857

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accagcgcctgatgcgccgctgtcgcgtcttatca	Protospacer
 .************** ***** ***********

10. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 5, identity: 0.857

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
ctcaacgcctgatgcgacgctggcgcgtcttagcg	Protospacer
.***.*****************.********* *

11. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 6, identity: 0.829

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gtttatgccagatgcgacgctgacgcgtcttatct	Protospacer
 *. ..*** *************************

12. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 6, identity: 0.829

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
tcagatgcctgatgcgacgctgacgcgtcttatca	Protospacer
*. ...****************************

13. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 6, identity: 0.829

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
tcagatgcctgatgcgacgctgacgcgtcttatca	Protospacer
*. ...****************************

14. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 6, identity: 0.829

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
tcagatgcctgatgcgacgctgacgcgtcttatca	Protospacer
*. ...****************************

15. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 6, identity: 0.829

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
tcagatgcctgatgcgacgctgacgcgtcttatca	Protospacer
*. ...****************************

16. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 6, identity: 0.829

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
tctgatgcctgatgcgacgctgacgcgtcttatca	Protospacer
*.....****************************

17. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 6, identity: 0.829

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
attgaagcctgatgcgacgctgacgcgtcttatca	Protospacer
 *... ****************************

18. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_AP023209 (Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence) position: , mismatch: 6, identity: 0.829

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gccgatgcctgatgcgacgctgacgcgtcttatca	Protospacer
 .*...****************************

19. spacer 2.3|1086323|31|NZ_CP040572|CRT matches to NC_015512 (Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY02, complete sequence) position: , mismatch: 7, identity: 0.774

gcccaggg---atttgttcaatccagcgtgccgc	CRISPR spacer
---caaagtccatttgttcaacccatcgtgccgc	Protospacer
   **..*   **********.*** ********

20. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
cacgatgcctgatgcgacgctgccgcgtcttatca	Protospacer
. *...**************** ***********

21. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
tgcgctgcctgatgcgacgctaatgcgtcttatca	Protospacer
* *. .***************.*.**********

22. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatca	Protospacer
 .....****************************

23. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcaggtgcctgatgcgacgctggcgcgtcttatca	Protospacer
 . .*.****************.***********

24. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gccgatgcctgatgcgacgctgacgcgttttatca	Protospacer
 .*...**********************.*****

25. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatca	Protospacer
 .....****************************

26. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcaggtgcctgatgcgacgctggcgcgtcttatca	Protospacer
 . .*.****************.***********

27. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gccgatgcctgatgcgacgctgacgcgttttatca	Protospacer
 .*...**********************.*****

28. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatca	Protospacer
 .....****************************

29. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcaggtgcctgatgcgacgctggcgcgtcttatca	Protospacer
 . .*.****************.***********

30. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gccgatgcctgatgcgacgctgacgcgttttatca	Protospacer
 .*...**********************.*****

31. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatca	Protospacer
 .....****************************

32. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcaggtgcctgatgcgacgctggcgcgtcttatca	Protospacer
 . .*.****************.***********

33. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gccgatgcctgatgcgacgctgacgcgttttatca	Protospacer
 .*...**********************.*****

34. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accggtgccagatgcgacgcagacgcgtcttatca	Protospacer
 .*.*.*** ********** *************

35. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatca	Protospacer
 .....****************************

36. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
ccaggtgcctgatgcgacgctggcgcgtcttatca	Protospacer
.. .*.****************.***********

37. spacer 2.1|1086201|31|NZ_CP040572|PILER-CR,CRT matches to NC_011370 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence) position: , mismatch: 8, identity: 0.742

tcaccaaaacagtgacaaaaactgtcaccaa	CRISPR spacer
tcaccaaaacagtgccaaagactcttgactg	Protospacer
************** ****.*** *.. * .

38. spacer 2.1|1086201|31|NZ_CP040572|PILER-CR,CRT matches to NZ_CP032697 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525a, complete sequence) position: , mismatch: 8, identity: 0.742

tcaccaaaacagtgacaaaaactgtcaccaa	CRISPR spacer
tcaccaaaacagtgccaaagactcttgactg	Protospacer
************** ****.*** *.. * .

39. spacer 2.1|1086201|31|NZ_CP040572|PILER-CR,CRT matches to NZ_CP049249 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.742

tcaccaaaacagtgacaaaaactgtcaccaa	CRISPR spacer
tcaccaaaacggtgccaaaaactcttgactg	Protospacer
**********.*** ******** *.. * .

40. spacer 2.6|1086323|32|NZ_CP040572|CRISPRCasFinder matches to NC_015512 (Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY02, complete sequence) position: , mismatch: 8, identity: 0.75

gcccaggg---atttgttcaatccagcgtgccgct	CRISPR spacer
---caaagtccatttgttcaacccatcgtgccgca	Protospacer
   **..*   **********.*** ********

41. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 8, identity: 0.852

cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
catccggcaatcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaaa	Protospacer
**. * *** .* .***************** **********************

42. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 8, identity: 0.852

cacgccg-catcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
-gctccgacgttcggtgcctgatgcgacgctggcgcgtcttatcaggcctacgag	Protospacer
 .* *** *.*.* **************************************.*.

43. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 8, identity: 0.852

cacgccgcatcctg-tgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
-aggcaccgtgctgatgtctgatgcgacgctggcgcgtcttatcagacctacaaa	Protospacer
 * **  *.* *** **.****************************.********

44. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgccagatgcgacgctggcgcgtcttatct	Protospacer
 . ...*** ************.************

45. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctggcgcgtcttatca	Protospacer
 . ...****************.***********

46. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

47. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

48. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

49. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

50. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gccgatgcctgatgcgtcgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

51. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accgatgcctgatgcgccgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

52. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accgatgcctgatgcgccgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

53. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctggcgcgtcttatca	Protospacer
 . ...****************.***********

54. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

55. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

56. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

57. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

58. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gccgatgcctgatgcgtcgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

59. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accgatgcctgatgcgccgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

60. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accgatgcctgatgcgccgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

61. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctggcgcgtcttatca	Protospacer
 . ...****************.***********

62. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

63. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

64. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

65. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

66. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gccgatgcctgatgcgtcgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

67. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accgatgcctgatgcgccgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

68. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accgatgcctgatgcgccgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

69. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctggcgcgtcttatca	Protospacer
 . ...****************.***********

70. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

71. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

72. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

73. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

74. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gccgatgcctgatgcgtcgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

75. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accgatgcctgatgcgccgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

76. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accgatgcctgatgcgccgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

77. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
tgaattacctgatgcgacgctggcgcatcttatca	Protospacer
*  * ..***************.***.*******

78. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatacgacgctgacgcgtcttatca	Protospacer
 . ...*******.********************

79. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
ccggatgcctgatgcgacgctggcgcgtcttatca	Protospacer
.. ...****************.***********

80. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatacgacgctgacgcgtcttatca	Protospacer
 . ...*******.********************

81. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
ccggatgcctgatgcgacgctggcgcgtcttatca	Protospacer
.. ...****************.***********

82. spacer 2.4|1086201|32|NZ_CP040572|CRISPRCasFinder matches to NC_011370 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence) position: , mismatch: 9, identity: 0.719

tcaccaaaacagtgacaaaaactgtcaccaaa	CRISPR spacer
tcaccaaaacagtgccaaagactcttgactgt	Protospacer
************** ****.*** *.. * .

83. spacer 2.4|1086201|32|NZ_CP040572|CRISPRCasFinder matches to NZ_CP032697 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525a, complete sequence) position: , mismatch: 9, identity: 0.719

tcaccaaaacagtgacaaaaactgtcaccaaa	CRISPR spacer
tcaccaaaacagtgccaaagactcttgactgc	Protospacer
************** ****.*** *.. * .

84. spacer 2.4|1086201|32|NZ_CP040572|CRISPRCasFinder matches to NZ_CP049249 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

tcaccaaaacagtgacaaaaactgtcaccaaa	CRISPR spacer
tcaccaaaacggtgccaaaaactcttgactgc	Protospacer
**********.*** ******** *.. * .

85. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.743

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gctgatgcctgatgcgatgctaacgcgtcttatca	Protospacer
 .....***********.***.************

86. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.743

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctagcgcgtcttatca	Protospacer
 . ...***************..***********

87. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.743

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctagcgcgtcttatca	Protospacer
 . ...***************..***********

88. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.743

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctagcgcgtcttatca	Protospacer
 . ...***************..***********

89. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.743

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctagcgcgtcttatca	Protospacer
 . ...***************..***********

90. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 9, identity: 0.743

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
acggatgcccgatgcgacgctggcgcgtcttatcg	Protospacer
 . ...***.************.***********

91. spacer 4.1|4603376|35|NZ_CP040572|CRISPRCasFinder matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 9, identity: 0.743

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gctgatgtctgatgcgacgctggcgcgtcttatca	Protospacer
 .....*.**************.***********

92. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 10, identity: 0.815

cacgccgcatcctg-tgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
-cagtcgtgtgcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
   *.**..* * * ****************..**********************

93. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 10, identity: 0.815

cacgccgcatcctg-tgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
-cagtcgtgtgcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
   *.**..* * * ****************..**********************

94. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 10, identity: 0.815

cacgcc-gcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
-gcgctggtgccggatgcctgatgcgacgctggcgcgtcttatcatgcctacaaa	Protospacer
 .***. *...*  .****************************** *********

95. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 10, identity: 0.815

cacgcc-gcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
-gcgctggtgccggatgcctgatgcgacgctggcgcgtcttatcatgcctacaaa	Protospacer
 .***. *...*  .****************************** *********

96. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 10, identity: 0.815

cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cattcggtgcacgatgcctgatgcgacgctgccgcgtcttatcaggcctacaaa	Protospacer
**. * *... * .***************** **********************

97. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 10, identity: 0.815

cacgccgcatcctg-tgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
-cagtcgtgtgcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
   *.**..* * * ****************..**********************

98. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 10, identity: 0.815

cacgccgcatcctg-tgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
-cagtcgtgtgcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
   *.**..* * * ****************..**********************

99. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.796

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagttatgcgcag------atgcctgatgcgacgctggcgcgtcttatcatgcctacaaa	Protospacer
      ..*** *      .****************************** *********

100. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.796

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagttgtacgcag------gtgcctgatgcgacgctggcgcgtcttatcatgcctacgag	Protospacer
      .**** *      ******************************* ******.*.

101. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.796

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagttatgcgcag------atgcctgatgcgacgctggcgcgtcttatcatgcctacaaa	Protospacer
      ..*** *      .****************************** *********

102. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.796

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagttgtacgcag------gtgcctgatgcgacgctggcgcgtcttatcatgcctacgag	Protospacer
      .**** *      ******************************* ******.*.

103. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.796

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagttatgcgcag------atgcctgatgcgacgctggcgcgtcttatcatgcctacaaa	Protospacer
      ..*** *      .****************************** *********

104. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.796

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagttgtacgcag------gtgcctgatgcgacgctggcgcgtcttatcatgcctacgag	Protospacer
      .**** *      ******************************* ******.*.

105. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.796

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagttatgcgcag------atgcctgatgcgacgctggcgcgtcttatcatgcctacaaa	Protospacer
      ..*** *      .****************************** *********

106. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.796

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagttgtacgcag------gtgcctgatgcgacgctggcgcgtcttatcatgcctacgag	Protospacer
      .**** *      ******************************* ******.*.

107. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 11, identity: 0.796

cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
catccggtaatcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacagc	Protospacer
**. * *.* .* .***************** ********************.

108. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
catttgtgcgctg------atgcctgatgcgacgctgacgcgtcttatcatgcctacaaa	Protospacer
      ..***.*      .*****************.************ *********

109. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
taattgtgcgcag------atgcctgatgcgacgctagcgcgtcttatcatgcctacaaa	Protospacer
      ..*** *      .****************.************* *********

110. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagtcgtgcgcag------atgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
      ..*** *      .****************..**********************

111. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagtcgtgcgcag------atgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
      ..*** *      .****************..**********************

112. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
catttgtgcgctg------atgcctgatgcgacgctgacgcgtcttatcatgcctacaaa	Protospacer
      ..***.*      .*****************.************ *********

113. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
taattgtgcgcag------atgcctgatgcgacgctagcgcgtcttatcatgcctacaaa	Protospacer
      ..*** *      .****************.************* *********

114. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagtcgtgcgcag------atgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
      ..*** *      .****************..**********************

115. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagtcgtgcgcag------atgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
      ..*** *      .****************..**********************

116. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
catttgtgcgctg------atgcctgatgcgacgctgacgcgtcttatcatgcctacaaa	Protospacer
      ..***.*      .*****************.************ *********

117. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
taattgtgcgcag------atgcctgatgcgacgctagcgcgtcttatcatgcctacaaa	Protospacer
      ..*** *      .****************.************* *********

118. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagtcgtgcgcag------atgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
      ..*** *      .****************..**********************

119. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagtcgtgcgcag------atgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
      ..*** *      .****************..**********************

120. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
catttgtgcgctg------atgcctgatgcgacgctgacgcgtcttatcatgcctacaaa	Protospacer
      ..***.*      .*****************.************ *********

121. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
taattgtgcgcag------atgcctgatgcgacgctagcgcgtcttatcatgcctacaaa	Protospacer
      ..*** *      .****************.************* *********

122. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagtcgtgcgcag------atgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
      ..*** *      .****************..**********************

123. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagtcgtgcgcag------atgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
      ..*** *      .****************..**********************

124. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 12, identity: 0.778

cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
caacaattaccaggtgcctgatgcgacgctggcgcgtcttatcatgcctacgag	Protospacer
**     .*.*  ******************************* ******.*.

125. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
catttgtgcgctg------atgcctgatgcgacgctgacgcgtcttatcatgcctacaaa	Protospacer
      ..***.*      .*****************.************ *********

126. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 13, identity: 0.759

cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
catttgtgctctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaat	Protospacer
**. .    **. .*****************.************ ********

127. spacer 3.1|1677318|54|NZ_CP040572|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 14, identity: 0.741

cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
tctccggcaattgaagcctgatgcgacgctgacgcgtcttatcaggcctacnag	Protospacer
. . * *** .. . ****************.******************* *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1183578 : 1211138

Stx2-converting_phage(31.58%)

tail,holin,integrase,transposase

attL 1183535:1183594|attR 1204043:1205356

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1183535:1183594	attL	NA	NA	NA	NA
WP_085948178.1\|1183578_1184792_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
WP_000800629.1\|1186229_1187081_+	hypothetical protein	NA	NA	NA	NA
WP_001071599.1\|1187180_1187387_+	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	1.8e-07	43.3
WP_000540864.1\|1187709_1188915_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_000428092.1\|1188916_1190230_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_001059531.1\|1190226_1191858_+	DNA-binding protein	NA	NA	NA	NA
WP_001052051.1\|1191858_1192257_+	hypothetical protein	NA	NA	NA	NA
WP_000361847.1\|1192354_1192768_+	hypothetical protein	NA	NA	NA	NA
WP_000150589.1\|1193163_1194336_+	hypothetical protein	NA	NA	NA	NA
WP_001417601.1\|1194411_1194714_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_001254939.1\|1194749_1195505_-\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_001108081.1\|1195846_1196413_+	HNH endonuclease	A0A1U9AJK5	Stx1_converting_phage	2.3e-108	100.0
WP_001223948.1\|1196387_1196999_+	protein ninG	A0A1U9AJF8	Stx1_converting_phage	2.5e-92	95.6
WP_001028854.1\|1196995_1197661_+	serine/threonine protein phosphatase	Q5TJL8	Enterobacteria_phage	5.0e-131	99.5
WP_001235472.1\|1197657_1198281_+	antitermination protein	K7PM87	Enterobacteria_phage	2.2e-112	98.1
WP_001302581.1\|1198533_1199277_+	hypothetical protein	NA	NA	NA	NA
WP_000499458.1\|1199362_1199530_+	DUF3927 family protein	NA	NA	NA	NA
WP_000143065.1\|1199937_1201791_+	DUF1737 domain-containing protein	H6WZJ9	Escherichia_phage	0.0e+00	97.9
WP_000284517.1\|1201940_1202156_+\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	4.5e-33	98.6
WP_000731241.1\|1202160_1202505_+	YdfR family protein	A0A0P0ZD64	Stx2-converting_phage	1.7e-58	99.1
WP_001171554.1\|1202861_1203242_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.4e-66	100.0
WP_000612591.1\|1203238_1203586_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
WP_000998000.1\|1203635_1204280_+\|transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	1.8e-69	100.0
WP_001299612.1\|1204086_1204977_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	5.6e-170	100.0
WP_000165061.1\|1204973_1205300_-\|transposase	transposase	A0A0N7BVE9	Escherichia_phage	1.3e-55	100.0
WP_001023396.1\|1205517_1205787_+\|tail	phage tail protein	B6DZB8	Enterobacteria_phage	3.8e-45	100.0
1204043:1205356	attR	NA	NA	NA	NA
WP_000442132.1\|1205947_1206370_+	DUF1076 domain-containing protein	B6DZB9	Enterobacteria_phage	5.7e-72	97.0
WP_001301665.1\|1206499_1207558_-	T3SS effector EspW	NA	NA	NA	NA
WP_001144077.1\|1207636_1208287_-	T3SS effector NleG family protein	B6DZZ5	Stx2-converting_phage	2.8e-25	37.2
WP_001132152.1\|1208469_1209060_+	T3SS effector guanine nucleotide exchange factor EspM2	NA	NA	NA	NA
WP_001302510.1\|1209046_1209166_-	hypothetical protein	NA	NA	NA	NA
WP_001217542.1\|1209561_1209810_-	DinI-like family protein	A5LH55	Enterobacteria_phage	3.1e-38	98.8
WP_000162574.1\|1210655_1211138_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	4.0e-29	46.8

DBSCAN-SWA_2

1488755 : 1589093

119

Escherichia_phage(81.11%)

holin,transposase,bacteriocin,tail,lysis,capsid,terminase,integrase,tRNA,portal

attL 1493111:1493135|attR 1557974:1557998

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001005794.1\|1488755_1489286_+	hypothetical protein	Q716G6	Shigella_phage	5.7e-69	99.3
WP_000403517.1\|1489285_1489753_+	DUF2824 family protein	Q2A0B3	Sodalis_phage	1.7e-64	74.7
WP_000960724.1\|1489739_1490420_+	DNA transfer protein	G5DA80	Enterobacteria_phage	1.8e-59	71.0
WP_001693763.1\|1490429_1491566_+	acyltransferase	Q716G3	Shigella_phage	5.3e-80	72.4
WP_000958700.1\|1491740_1492898_-\|integrase	prophage integrase IntS	E7DYQ6	Enterobacteria_phage	2.2e-222	100.0
1493111:1493135	attL	NA	NA	NA	NA
WP_001218308.1\|1493329_1494499_+\|integrase	site-specific integrase	A0A2R2Z2Y0	Escherichia_phage	1.7e-230	100.0
WP_000453637.1\|1494482_1494665_-	helix-turn-helix domain-containing protein	A0A2R2Z2X2	Escherichia_phage	4.1e-27	100.0
WP_000994803.1\|1494743_1495121_-	DUF1627 domain-containing protein	A0A2R2Z2X7	Escherichia_phage	2.0e-52	100.0
WP_001291844.1\|1495156_1495369_-	DUF1382 family protein	A0A2R2X2A7	Escherichia_phage	7.1e-31	100.0
WP_000163444.1\|1495328_1495955_-	adenine methylase	A0A2R2Z304	Escherichia_phage	1.0e-122	100.0
WP_000809302.1\|1495951_1496383_-	hypothetical protein	A0A2R2Z303	Escherichia_phage	7.3e-75	100.0
WP_000211992.1\|1496438_1497116_-	ORF6N domain-containing protein	A0A2R2Z302	Escherichia_phage	1.3e-123	100.0
WP_001260980.1\|1497440_1497698_+	type II toxin-antitoxin system ParD family antitoxin	A0A0N7C055	Escherichia_phage	8.6e-39	100.0
WP_001451755.1\|1497826_1498024_+	hypothetical protein	A0A0N7BYR2	Escherichia_phage	4.1e-33	100.0
WP_001302866.1\|1498112_1498418_+	HigA family addiction module antidote protein	A0A0N7BS23	Escherichia_phage	4.4e-50	100.0
WP_001451754.1\|1498460_1499030_-	hypothetical protein	A0A0N7BS22	Escherichia_phage	7.3e-99	100.0
WP_000206752.1\|1499292_1499916_-	DUF551 domain-containing protein	A0A1I9LJM0	Stx_converting_phage	3.1e-119	100.0
WP_000212746.1\|1499919_1500207_-	hypothetical protein	A0A1I9LJM1	Stx_converting_phage	9.2e-50	100.0
WP_001142590.1\|1500208_1500427_-	DUF4014 family protein	A0A1I9LJM2	Stx_converting_phage	3.5e-33	100.0
WP_001301947.1\|1500428_1500644_-	hypothetical protein	A0A0N7C076	Escherichia_phage	7.9e-38	100.0
WP_001301469.1\|1500603_1501110_-	hypothetical protein	A0A0N7C063	Escherichia_phage	4.2e-90	100.0
WP_001303141.1\|1501111_1502059_-	ead/Ea22-like family protein	A0A0N7BYR8	Escherichia_phage	1.6e-183	100.0
WP_000476217.1\|1502055_1502295_-	hypothetical protein	A0A2R2Z309	Escherichia_phage	2.1e-39	100.0
WP_000157000.1\|1502287_1502491_-	hypothetical protein	A0A2R2Z313	Escherichia_phage	4.7e-32	100.0
WP_001453790.1\|1502487_1503366_-	phosphoadenosine phosphosulfate reductase family protein	A0A2R2Z314	Escherichia_phage	1.0e-179	100.0
WP_001159716.1\|1503473_1503917_-	hypothetical protein	A0A2R2Z306	Escherichia_phage	1.7e-79	100.0
WP_000080417.1\|1503993_1504815_-	YfdQ family protein	A0A2R2Z323	Escherichia_phage	2.3e-149	100.0
WP_000077905.1\|1504878_1505226_-	hypothetical protein	A0A2R2X2A9	Escherichia_phage	5.9e-59	100.0
WP_085948178.1\|1505617_1506830_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
WP_000187066.1\|1507201_1507891_-	YqaJ viral recombinase family protein	A0A2R2Z325	Escherichia_phage	2.7e-135	100.0
WP_000459724.1\|1507887_1508838_-	recombinase RecT	A0A2R2Z324	Escherichia_phage	1.4e-179	100.0
WP_000995346.1\|1508856_1509138_-	host nuclease inhibitor GamL	A0A2R2Z319	Escherichia_phage	1.7e-48	100.0
WP_024175068.1\|1509158_1509380_-	hypothetical protein	A0A2R2Z322	Escherichia_phage	6.4e-35	100.0
WP_000917253.1\|1509451_1509664_-	hypothetical protein	A0A2R2Z321	Escherichia_phage	3.4e-33	100.0
WP_000201269.1\|1509734_1510382_-	Rha family transcriptional regulator	A0A2R2Z320	Escherichia_phage	1.5e-119	100.0
WP_001064714.1\|1511242_1512196_-	type II restriction endonuclease BsuBI	A0A0P0ZG22	Escherichia_phage	7.0e-187	100.0
WP_000939558.1\|1512192_1513662_-	SAM-dependent methyltransferase	A0A2R2Z316	Escherichia_phage	3.5e-286	100.0
WP_001056250.1\|1513756_1514470_-	LexA family transcriptional regulator	A0A2R2X2B0	Escherichia_phage	6.3e-132	100.0
WP_001240876.1\|1514565_1514769_+	Cro/CI family transcriptional regulator	A0A2R2Z333	Escherichia_phage	2.0e-30	100.0
WP_001302923.1\|1514939_1515134_+	hypothetical protein	NA	NA	NA	NA
WP_001271433.1\|1515300_1515678_+	hypothetical protein	A0A2R2Z329	Escherichia_phage	4.0e-61	100.0
WP_000913119.1\|1515671_1517192_+	DEAD/DEAH box helicase	A0A2R2Z335	Escherichia_phage	6.4e-307	100.0
WP_001193567.1\|1517181_1518153_+	DNA primase	A0A2R2Z336	Escherichia_phage	1.4e-195	100.0
WP_000402093.1\|1518152_1518602_+	DUF1367 family protein	A0A2R2Z328	Escherichia_phage	1.3e-82	100.0
WP_001187434.1\|1518609_1519173_+	bacteriophage lambda NinG family protein	A0A2R2Z332	Escherichia_phage	4.7e-106	100.0
WP_000144764.1\|1519169_1519364_+	protein ninH	G9L694	Escherichia_phage	1.9e-30	100.0
WP_001204844.1\|1519356_1519791_+	antitermination protein	A0A2R2Z331	Escherichia_phage	5.6e-83	100.0
WP_024165517.1\|1519779_1520025_-	hypothetical protein	A0A0P0ZGS0	Escherichia_phage	1.1e-35	98.8
WP_001356551.1\|1520039_1520192_+	DNA methylase	A0A2R2Z327	Escherichia_phage	4.0e-20	100.0
WP_000649753.1\|1520574_1521534_+	Shiga toxin Stx2c subunit A	Q776Q3	Enterobacteria_phage	5.6e-176	100.0
WP_000738068.1\|1521545_1521815_+	Shiga toxin Stx2a subunit B	A0A2R2Z326	Escherichia_phage	1.2e-43	100.0
WP_000874428.1\|1522300_1524238_+	SASA family carbohydrate esterase	A0A2R2Z342	Escherichia_phage	0.0e+00	100.0
WP_000143458.1\|1524372_1524552_+	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
WP_001290210.1\|1524592_1524838_+	DUF826 domain-containing protein	A0A2R2Z348	Escherichia_phage	3.6e-18	100.0
WP_001072901.1\|1524915_1525131_+\|holin	holin	A0A2R2Z340	Escherichia_phage	1.2e-33	100.0
WP_000087729.1\|1525135_1525669_+	lysozyme	A0A2R2Z343	Escherichia_phage	1.3e-102	100.0
WP_001453789.1\|1525901_1526030_-	hypothetical protein	A0A0N7BTS3	Escherichia_phage	1.2e-06	86.2
WP_085948178.1\|1525995_1527209_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
WP_000989259.1\|1527262_1527826_+	hypothetical protein	A0A2R2Z339	Escherichia_phage	2.6e-104	100.0
WP_000455406.1\|1527825_1527975_+	hypothetical protein	A0A0P0ZFU6	Escherichia_phage	2.4e-17	100.0
WP_001082654.1\|1527982_1528447_+\|lysis	lysis protein	A0A2R2Z341	Escherichia_phage	5.8e-78	100.0
WP_000738505.1\|1528478_1528772_-	serum resistance lipoprotein Bor	A0A2R2X2B2	Escherichia_phage	6.8e-48	100.0
WP_001301714.1\|1528921_1529125_+	hypothetical protein	A0A2R2Z338	Escherichia_phage	7.7e-35	100.0
WP_001086073.1\|1529180_1529987_+\|terminase	terminase	A0A0P0ZG40	Escherichia_phage	1.3e-133	100.0
WP_000143988.1\|1529967_1531674_+\|terminase	terminase	A0A2R2Z350	Escherichia_phage	0.0e+00	100.0
WP_000787519.1\|1531673_1533818_+\|portal	portal protein	A0A2R2Z346	Escherichia_phage	0.0e+00	100.0
WP_000345010.1\|1533975_1534983_+	hypothetical protein	A0A2R2Z355	Escherichia_phage	2.3e-180	100.0
WP_000214474.1\|1535006_1536221_+\|capsid	N4-gp56 family major capsid protein	A0A2R2Z358	Escherichia_phage	1.3e-233	100.0
WP_001140442.1\|1536276_1536666_+	hypothetical protein	A0A2R2Z353	Escherichia_phage	9.9e-63	100.0
WP_001290743.1\|1536715_1537177_+	hypothetical protein	A0A2R2Z354	Escherichia_phage	7.8e-75	100.0
WP_000829200.1\|1537160_1537724_+	hypothetical protein	A0A2R2Z349	Escherichia_phage	3.2e-102	100.0
WP_000207926.1\|1537723_1538374_+	hypothetical protein	A0A0N6WEJ5	Escherichia_phage	4.6e-121	100.0
WP_000117994.1\|1538370_1540308_+\|tail	tail fiber protein	A0A1I9LJS9	Stx_converting_phage	1.1e-64	100.0
WP_001024006.1\|1540309_1540579_+\|tail	phage tail protein	A0A1I9LJT0	Stx_converting_phage	2.2e-45	100.0
WP_001303606.1\|1540718_1540907_+	hypothetical protein	A0A2R2Z344	Escherichia_phage	6.9e-30	100.0
WP_001146324.1\|1541201_1542827_+	hypothetical protein	A0A0N7C0A7	Escherichia_phage	0.0e+00	100.0
WP_000197192.1\|1542823_1544092_+	host specificity protein J	A0A2R2Z364	Escherichia_phage	4.9e-220	100.0
WP_000455635.1\|1544106_1544385_+	hypothetical protein	A0A088CD71	Shigella_phage	1.1e-50	100.0
WP_001301884.1\|1544390_1545008_+	hypothetical protein	A0A2R2Z362	Escherichia_phage	1.1e-121	100.0
WP_000835362.1\|1545098_1545833_+	Ail/Lom family outer membrane beta-barrel protein	A0A0N7C1B9	Escherichia_phage	4.4e-136	100.0
WP_024175551.1\|1545763_1546009_-	hypothetical protein	Q7Y2U2	Escherichia_phage	1.6e-39	98.8
WP_000078907.1\|1546065_1546206_+	Hok/Gef family protein	A0A2R2X2B4	Escherichia_phage	3.1e-19	100.0
WP_000035558.1\|1546262_1546664_+	hypothetical protein	A0A2R2Z359	Escherichia_phage	3.7e-73	100.0
WP_000509481.1\|1546757_1547414_+	hypothetical protein	A0A2R2Z361	Escherichia_phage	2.4e-109	100.0
WP_000455644.1\|1547416_1547863_+	hypothetical protein	A0A1I9LJU1	Stx_converting_phage	1.4e-76	100.0
WP_000540391.1\|1547872_1548124_+\|bacteriocin	bacteriocin	A0A2R2Z351	Escherichia_phage	7.9e-13	100.0
WP_000012450.1\|1548134_1549400_+	hypothetical protein	A0A1I9LJU3	Stx_converting_phage	1.4e-206	100.0
WP_000331692.1\|1549469_1557851_+	hypothetical protein	A0A0N7BSA7	Escherichia_phage	0.0e+00	100.0
WP_000368131.1\|1558072_1559005_-	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	1.2e-167	100.0
1557974:1557998	attR	NA	NA	NA	NA
WP_000776768.1\|1559298_1560054_+	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
WP_001301650.1\|1560258_1560375_-	hypothetical protein	NA	NA	NA	NA
WP_000952959.1\|1560448_1561480_-	hypothetical protein	NA	NA	NA	NA
WP_001301981.1\|1561844_1563185_-	long-chain fatty acid transporter FadL	NA	NA	NA	NA
WP_000030901.1\|1563556_1563841_+	YfcZ/YiiS family protein	NA	NA	NA	NA
WP_000531969.1\|1564020_1565331_+	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
WP_000426146.1\|1565330_1567475_+	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA
WP_001195817.1\|1567677_1568163_+	phosphohistidine phosphatase SixA	NA	NA	NA	NA
WP_000033336.1\|1568808_1569372_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_001112847.1\|1569453_1571052_+	fimbria/pilus outer membrane usher protein	NA	NA	NA	NA
WP_000182852.1\|1571074_1571833_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_000675435.1\|1571843_1572344_+	fimbrial protein	NA	NA	NA	NA
WP_001415277.1\|1572382_1572811_+	fimbrial protein	NA	NA	NA	NA
WP_001301662.1\|1572807_1572981_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_000794741.1\|1573213_1573735_+	fimbrial protein	NA	NA	NA	NA
WP_001301548.1\|1573736_1574579_+	DUF2544 domain-containing protein	NA	NA	NA	NA
WP_000730817.1\|1574749_1575301_-	endonuclease SmrB	NA	NA	NA	NA
WP_001302029.1\|1575466_1576399_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_001297933.1\|1576433_1577519_+	chorismate synthase	A0A291AU41	Pandoravirus	7.0e-90	47.8
WP_001043834.1\|1577522_1578347_+	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
WP_000447361.1\|1578346_1579156_+	TSUP family transporter	NA	NA	NA	NA
WP_001089225.1\|1579155_1579704_+	elongation factor P hydroxylase	NA	NA	NA	NA
WP_000559764.1\|1579737_1580016_+	YfcL family protein	NA	NA	NA	NA
WP_000683769.1\|1580136_1582143_-\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
WP_000817183.1\|1582301_1583522_+	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA
WP_000127753.1\|1583796_1584975_+	MFS transporter	NA	NA	NA	NA
WP_000615801.1\|1584971_1585967_-	flagella biosynthesis regulator Flk	NA	NA	NA	NA
WP_000699109.1\|1586065_1587202_+	4-phosphoerythronate dehydrogenase PdxB	A0A2R8FDS8	Brazilian_cedratvirus	3.1e-24	29.8
WP_001289184.1\|1587267_1588281_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_001283590.1\|1588280_1589093_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA

DBSCAN-SWA_3

1804076 : 1888575

100

Enterobacteria_phage(52.0%)

holin,tail,terminase,portal,protease,tRNA,integrase

attL 1806551:1806571|attR 1863993:1864013

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569336.1\|1804076_1805003_+	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	4.8e-23	30.8
WP_000783120.1\|1805007_1805739_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|1805719_1805827_-	protein YohO	NA	NA	NA	NA
WP_027868261.1\|1805886_1806588_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.6e-103	100.0
1806551:1806571	attL	NA	NA	NA	NA
WP_000063648.1\|1806608_1807895_-\|integrase	site-specific integrase	Q9EY96	Enterobacteria_phage	7.6e-253	100.0
WP_001193437.1\|1807928_1808183_-	DUF1233 family excisionase	Q859D3	Escherichia_coli_phage	3.0e-44	100.0
WP_000556581.1\|1808201_1808336_-	hypothetical protein	A0A0P0ZDP5	Stx2-converting_phage	1.4e-21	97.7
WP_000457728.1\|1808339_1808582_-	DUF4222 domain-containing protein	B6DZ51	Enterobacteria_phage	1.5e-37	100.0
WP_000610375.1\|1808669_1809032_-	DUF551 domain-containing protein	Q9EY98	Enterobacteria_phage	1.8e-71	100.0
WP_000207903.1\|1809028_1809385_-	hypothetical protein	A0A0N7KZJ2	Stx2-converting_phage	3.1e-63	100.0
WP_001113545.1\|1809461_1809749_-	hypothetical protein	NA	NA	NA	NA
WP_001356547.1\|1809718_1809895_-	hypothetical protein	B6DZ55	Enterobacteria_phage	4.6e-28	100.0
WP_001289954.1\|1809896_1810844_-	ead/Ea22-like family protein	A0A0P0ZE96	Stx2-converting_phage	3.6e-183	100.0
WP_000763383.1\|1810840_1811062_-	TraR/DksA family transcriptional regulator	A0A1I9LJM6	Stx_converting_phage	2.9e-35	100.0
WP_001444000.1\|1811160_1811442_-	cell division protein ZapA	A0A0P0ZBQ0	Stx2-converting_phage	1.9e-47	100.0
WP_000548547.1\|1811452_1811644_-	DUF1382 family protein	A0A1I9LJM8	Stx_converting_phage	1.9e-27	100.0
WP_001303590.1\|1811616_1811799_-	DUF1317 domain-containing protein	A0A0P0ZAS9	Stx2-converting_phage	7.4e-29	100.0
WP_000186740.1\|1811798_1812476_-	YqaJ viral recombinase family protein	A0A1I9LJM9	Stx_converting_phage	4.6e-132	100.0
WP_000100847.1\|1812472_1813258_-	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000995439.1\|1813263_1813560_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	1.6e-49	100.0
WP_000233576.1\|1813635_1813842_-	phage encoded cell division inhibitor protein	K7P6H3	Enterobacteria_phage	3.2e-28	85.3
WP_000866321.1\|1814322_1814700_-	ASCH domain-containing protein	Q6SE87	Lactobacillus_prophage	1.3e-30	49.2
WP_000380252.1\|1814677_1815739_-	hypothetical protein	Q6SE88	Lactobacillus_prophage	2.9e-64	42.0
WP_000858974.1\|1815819_1816509_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	2.8e-92	75.0
WP_001067457.1\|1816613_1816844_+	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	3.8e-22	69.3
WP_001182899.1\|1816913_1817453_+	hypothetical protein	M9NZI6	Enterobacteria_phage	2.0e-61	66.1
WP_001415640.1\|1817539_1818469_+	replication protein	A0A0M5M7Y1	Salmonella_phage	3.6e-111	64.4
WP_000788810.1\|1818465_1819167_+	Replication protein P	M1FJ72	Enterobacteria_phage	1.4e-128	98.7
WP_000145915.1\|1819163_1819466_+	protein ren	A0A0N6WES4	Escherichia_phage	1.1e-42	95.7
WP_001070451.1\|1819533_1819866_+	SMR family multidrug efflux protein EmrE	NA	NA	NA	NA
WP_032102575.1\|1819957_1820065_+	hypothetical protein	NA	NA	NA	NA
WP_000709082.1\|1820122_1821649_+	recombinase family protein	Q3HQV4	Burkholderia_phage	7.9e-31	27.8
WP_001302427.1\|1822113_1822665_+	Raf kinase inhibitor-like protein YbcL	NA	NA	NA	NA
WP_000881075.1\|1822674_1823472_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001303586.1\|1823588_1823690_+	hypothetical protein	NA	NA	NA	NA
WP_001054341.1\|1823686_1824142_+	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	1.1e-60	67.5
WP_000224916.1\|1824141_1824312_+	hypothetical protein	K7P7K0	Enterobacteria_phage	1.5e-12	67.9
WP_000774488.1\|1824304_1824595_+	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	4.3e-47	94.8
WP_001099712.1\|1824591_1824954_+	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	4.3e-60	96.5
WP_000971055.1\|1824950_1825091_+	YlcG family protein	K7PHH3	Enterobacteria_phage	1.1e-08	69.8
WP_001204769.1\|1825176_1825611_+	antitermination protein	G9L695	Escherichia_phage	1.3e-79	97.2
WP_024165948.1\|1825599_1825848_-	hypothetical protein	A0A0P0ZGS0	Escherichia_phage	1.2e-34	98.8
WP_001356551.1\|1825862_1826015_+	DNA methylase	A0A2R2Z327	Escherichia_phage	4.0e-20	100.0
WP_000142932.1\|1826818_1828765_+	DUF1737 domain-containing protein	A0A075M342	Escherichia_Stx1-converting_recombinant_phage	0.0e+00	98.1
WP_000143458.1\|1828901_1829081_+	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
WP_001290230.1\|1829121_1829367_+	DUF826 domain-containing protein	A0A0P0ZGR2	Escherichia_phage	8.8e-17	100.0
WP_000284506.1\|1829444_1829660_+\|holin	holin	Q9ZWW2	Enterobacteria_phage	6.9e-34	100.0
WP_000087728.1\|1829664_1830198_+	lysozyme	A0A1I9LJR4	Stx_converting_phage	1.8e-102	100.0
WP_001056806.1\|1830468_1831038_+	hypothetical protein	A0A1I9LJR6	Stx_converting_phage	3.1e-105	100.0
WP_000539792.1\|1831037_1831184_+	hypothetical protein	A0A0P0ZE99	Stx2-converting_phage	2.6e-16	100.0
WP_012816791.1\|1831411_1831597_+	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_000348565.1\|1832114_1832591_+	DUF1441 family protein	Q9EYD0	Enterobacteria_phage	2.1e-83	100.0
WP_001077621.1\|1832587_1833595_+\|terminase	phage terminase large subunit family protein	Q9EYD1	Enterobacteria_phage	1.8e-201	100.0
WP_000114064.1\|1833756_1834995_+\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	6.6e-60	35.1
WP_000229066.1\|1834987_1835212_+	hypothetical protein	NA	NA	NA	NA
WP_001038670.1\|1835271_1835853_+	hypothetical protein	A0A1W6JPH8	Morganella_phage	1.5e-51	61.3
WP_088136225.1\|1835833_1836553_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_000335965.1\|1836545_1836770_+	hypothetical protein	NA	NA	NA	NA
WP_000551748.1\|1836762_1837356_+	hypothetical protein	NA	NA	NA	NA
WP_000728901.1\|1837552_1837795_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_032311625.1\|1837791_1839606_+	DNA primase	Q7M2A8	Enterobacteria_phage	4.4e-129	49.9
WP_001399692.1\|1839893_1840139_+	hypothetical protein	NA	NA	NA	NA
WP_000126660.1\|1840135_1840558_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_001114742.1\|1841024_1841219_+	hypothetical protein	NA	NA	NA	NA
WP_000860404.1\|1841215_1843105_+\|protease	Clp protease ClpP	Q8VNN5	Enterobacteria_phage	9.4e-183	51.5
WP_000133409.1\|1843362_1843644_+	hypothetical protein	NA	NA	NA	NA
WP_000102414.1\|1845136_1845349_+	hypothetical protein	S5MBY8	Escherichia_phage	1.1e-28	97.1
WP_000974564.1\|1845348_1846851_+\|portal	phage portal protein	Q9EYD2	Enterobacteria_phage	4.8e-291	100.0
WP_001114426.1\|1846795_1848820_+\|protease	Clp protease ClpP	S5M7Q8	Escherichia_phage	0.0e+00	99.7
WP_001097065.1\|1848907_1849234_+	DUF2190 family protein	Q9EYD5	Enterobacteria_phage	6.1e-50	100.0
WP_001281350.1\|1849226_1849508_+	DNA breaking-rejoining protein	Q8VNN4	Enterobacteria_phage	3.9e-45	97.8
WP_000974966.1\|1849510_1850134_+	hypothetical protein	Q9EYD6	Enterobacteria_phage	6.6e-101	100.0
WP_000682716.1\|1850146_1850545_+\|tail	tail protein	Q9EYD7	Enterobacteria_phage	5.9e-71	100.0
WP_000235090.1\|1850552_1851305_+\|tail	phage tail protein	Q687F6	Enterobacteria_phage	5.8e-136	100.0
WP_000479043.1\|1851318_1851741_+\|tail	phage minor tail protein G	Q687F5	Enterobacteria_phage	5.1e-73	100.0
WP_000438877.1\|1851767_1852076_+\|tail	phage tail assembly protein T	Q687F4	Enterobacteria_phage	1.5e-53	99.0
WP_000918269.1\|1852119_1854765_+\|tail	phage tail tape measure protein	Q9EYE1	Enterobacteria_phage	0.0e+00	100.0
WP_000847298.1\|1854761_1855091_+\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_001301816.1\|1855090_1855789_+\|tail	phage minor tail protein L	Q9EYE3	Enterobacteria_phage	1.5e-133	100.0
WP_000194801.1\|1855799_1856543_+\|tail	phage tail protein	Q9EYE4	Enterobacteria_phage	7.0e-150	99.6
WP_123007081.1\|1856488_1857118_+\|tail	tail assembly protein	A0A0P0ZEN7	Stx2-converting_phage	3.9e-101	95.2
WP_000514967.1\|1857358_1860835_+	host specificity protein J	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	90.5
WP_001228302.1\|1860902_1861502_+	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	1.3e-109	99.5
WP_000268979.1\|1861566_1862880_+\|tail	tail fiber protein	Q9EYE8	Enterobacteria_phage	2.4e-76	99.1
WP_001023381.1\|1862881_1863151_+\|tail	phage tail protein	Q687E5	Enterobacteria_phage	1.0e-42	96.6
WP_001261937.1\|1863518_1863767_-	DinI family protein	Q687E4	Enterobacteria_phage	9.1e-38	97.6
WP_001301761.1\|1864281_1865967_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	1.7e-305	100.0
1863993:1864013	attR	NA	NA	NA	NA
WP_000598641.1\|1865963_1866683_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295430.1\|1866729_1867200_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_001295429.1\|1867241_1867703_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
WP_001087225.1\|1867827_1869831_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	100.0
WP_001302810.1\|1869827_1870964_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	1.9e-167	100.0
WP_000528951.1\|1870956_1871688_-	hypothetical protein	NA	NA	NA	NA
WP_001294377.1\|1871706_1873236_-	hypothetical protein	NA	NA	NA	NA
WP_001302026.1\|1873246_1874335_-	MoxR family ATPase	NA	NA	NA	NA
WP_000636932.1\|1875575_1875893_-	hypothetical protein	NA	NA	NA	NA
WP_000356841.1\|1875954_1879584_-	DUF4132 domain-containing protein	NA	NA	NA	NA
WP_122989774.1\|1879593_1881135_-	DUF4132 domain-containing protein	NA	NA	NA	NA
WP_001411921.1\|1881298_1882579_-	WGR domain-containing protein	NA	NA	NA	NA
WP_001301615.1\|1886541_1888575_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.4e-54	27.6

DBSCAN-SWA_4

1914224 : 1952291

Escherichia_phage(63.64%)

head,holin,tail,lysis,capsid,terminase,plate,integrase,tRNA,portal

attL 1916005:1916032|attR 1947965:1947992

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000807362.1\|1914224_1915124_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	1.3e-12	29.0
WP_001303579.1\|1915529_1915847_+	hypothetical protein	NA	NA	NA	NA
WP_001303578.1\|1915834_1916014_+	hypothetical protein	NA	NA	NA	NA
1916005:1916032	attL	NA	NA	NA	NA
WP_000985260.1\|1916111_1917125_-\|integrase	site-specific integrase	Q83VS6	Escherichia_phage	8.3e-194	99.4
WP_000020919.1\|1917240_1917540_-	helix-turn-helix domain-containing protein	Q1JS61	Enterobacteria_phage	2.4e-48	100.0
WP_001081582.1\|1917661_1917937_+	hypothetical protein	Q1JS60	Enterobacteria_phage	1.3e-48	100.0
WP_000217670.1\|1918114_1918615_+	hypothetical protein	M1SV55	Escherichia_phage	2.6e-92	100.0
WP_000557698.1\|1918678_1918903_+	DUF2732 family protein	S4TP68	Salmonella_phage	5.2e-32	97.3
WP_001277898.1\|1918902_1919202_+	DUF5405 family protein	S4TUD1	Salmonella_phage	3.2e-45	99.0
WP_001113265.1\|1919204_1919429_+	hypothetical protein	S4TRY6	Salmonella_phage	3.2e-34	98.6
WP_000027664.1\|1919425_1919701_+	DUF5405 family protein	U5N3W1	Enterobacteria_phage	3.8e-45	100.0
WP_000268574.1\|1919690_1921973_+	replication endonuclease	M1SV59	Escherichia_phage	0.0e+00	91.3
WP_000063136.1\|1922062_1923286_+	hypothetical protein	NA	NA	NA	NA
WP_001302413.1\|1923332_1923785_+	hypothetical protein	NA	NA	NA	NA
WP_000844437.1\|1923784_1925752_+	hypothetical protein	NA	NA	NA	NA
WP_001693738.1\|1926069_1927104_-\|portal	phage portal protein	A0A0F7LDI7	Escherichia_phage	9.3e-201	99.7
WP_000156848.1\|1927103_1928876_-\|terminase	terminase ATPase subunit family protein	A0A0F7LCM8	Escherichia_phage	0.0e+00	99.7
WP_001085952.1\|1929049_1929904_+\|capsid	GPO family capsid scaffolding protein	Q778Z1	Enterobacteria_phage	8.6e-136	99.3
WP_001248594.1\|1929962_1931036_+\|capsid	phage major capsid protein, P2 family	Q83VT1	Escherichia_phage	1.6e-200	99.2
WP_024178727.1\|1931039_1931783_+\|terminase	terminase endonuclease subunit	A0A0F7LBP7	Escherichia_phage	2.8e-122	97.2
WP_000988633.1\|1931882_1932392_+\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	1.1e-90	100.0
WP_000846406.1\|1932391_1932595_+\|tail	tail protein X	A0A0F7LCN2	Escherichia_phage	5.2e-31	98.5
WP_000123123.1\|1932598_1932880_+\|holin	holin	A0A0F7LA12	Escherichia_phage	1.3e-43	100.0
WP_001144101.1\|1932879_1933377_+	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	3.1e-93	100.0
WP_000736555.1\|1933391_1933817_+	hypothetical protein	A0A0F7LBP4	Escherichia_phage	1.2e-61	98.6
WP_000040644.1\|1933804_1934230_+\|lysis	LysB family phage lysis regulatory protein	A0A0F7LDJ6	Escherichia_phage	2.0e-64	94.3
WP_001300730.1\|1934201_1934375_+	hypothetical protein	Q7Y4E1	Escherichia_virus	5.2e-24	94.7
WP_000917144.1\|1934337_1934805_+\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	2.5e-81	98.7
WP_001001810.1\|1934797_1935250_+	phage virion morphogenesis protein	A0A0F7LBV9	Escherichia_phage	2.2e-74	97.3
WP_001093728.1\|1935316_1935952_+\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	2.9e-112	98.1
WP_000127154.1\|1935948_1936296_+\|plate	baseplate assembly protein	A0A0F7LDQ1	Escherichia_phage	6.5e-58	99.1
WP_001121479.1\|1936300_1937209_+\|plate	baseplate assembly protein	A0A0F7LCQ9	Escherichia_phage	7.5e-162	99.7
WP_001285352.1\|1937201_1937813_+\|tail	phage tail protein I	A0A0F7LA36	Escherichia_phage	3.8e-117	99.5
WP_000217052.1\|1937809_1939129_+\|tail	phage tail protein	M1TAS6	Escherichia_phage	1.2e-179	68.5
WP_001057694.1\|1939128_1939731_+\|tail	tail fiber assembly protein	A0A0F7LDQ5	Escherichia_phage	1.5e-97	91.0
WP_001008233.1\|1939702_1940146_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	4.9e-82	99.3
WP_001145592.1\|1940166_1940577_-	hypothetical protein	A0A0F7LBW5	Escherichia_phage	5.9e-66	98.4
WP_000905094.1\|1940607_1941201_+	recombinase family protein	A0A0F7LA37	Escherichia_phage	2.1e-104	97.5
WP_001286706.1\|1941260_1942451_+\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	6.9e-224	99.2
WP_001251408.1\|1942463_1942982_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
WP_001031303.1\|1943038_1943314_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.7e-41	100.0
WP_001496926.1\|1943346_1943466_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.4e-15	97.4
WP_000069957.1\|1943458_1945906_+\|tail	phage tail tape measure protein	M1T2S3	Escherichia_phage	0.0e+00	96.3
WP_000978913.1\|1945920_1946400_+\|tail	phage tail protein	Q7Y4C7	Escherichia_virus	3.3e-84	98.7
WP_000882933.1\|1946399_1947563_+	phage late control D family protein	U5N3V4	Enterobacteria_phage	1.7e-203	98.4
WP_000468308.1\|1947644_1947863_+	prophage transcriptional regulator OgrK	A0A0F7LDQ9	Escherichia_phage	4.7e-38	100.0
WP_000476014.1\|1948136_1949498_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.9e-217	99.7
1947965:1947992	attR	NA	NA	NA	NA
WP_001301848.1\|1949645_1949978_-	YegP family protein	NA	NA	NA	NA
WP_000137884.1\|1950168_1950891_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	2.9e-31	33.6
WP_000675144.1\|1950887_1952291_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	1.2e-33	29.4

DBSCAN-SWA_5

2051377 : 2125539

Escherichia_phage(32.61%)

holin,head,transposase,tail,terminase,protease,integrase,portal

attL 2047018:2047033|attR 2102783:2102798

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2047018:2047033	attL	NA	NA	NA	NA
WP_000998048.1\|2051377_2052916_-\|transposase	IS66-like element ISEc8 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.5e-300	100.0
WP_000612591.1\|2052965_2053313_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
WP_001171554.1\|2053309_2053690_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.4e-66	100.0
WP_000973176.1\|2054051_2054597_+	bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase	NA	NA	NA	NA
WP_001295633.1\|2054593_2055337_+	adenosylcobinamide-GDP ribazoletransferase	NA	NA	NA	NA
WP_001193830.1\|2055348_2056428_+	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA
WP_000986334.1\|2056489_2057425_+	L,D-transpeptidase	NA	NA	NA	NA
WP_001011474.1\|2057881_2058799_+	nitrogen assimilation transcriptional regulator	NA	NA	NA	NA
WP_001011000.1\|2058900_2059851_+	HTH-type transcriptional regulator Cbl	NA	NA	NA	NA
WP_122989775.1\|2059968_2061612_+	toxic metabolite efflux MATE transporter YeeO	NA	NA	NA	NA
WP_000532909.1\|2062237_2062954_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_001060244.1\|2063296_2064751_-	AMP nucleosidase	NA	NA	NA	NA
WP_000378596.1\|2064852_2066169_-	shikimate transporter	NA	NA	NA	NA
WP_000480501.1\|2066482_2067535_+	glycosyltransferase family 9 protein	NA	NA	NA	NA
WP_014714124.1\|2067796_2075779_-	inverse autotransporter adhesin-like protein YeeJ	NA	NA	NA	NA
WP_001302302.1\|2076268_2077066_-	DgsA anti-repressor MtfA	NA	NA	NA	NA
WP_000533600.1\|2077301_2078324_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	2.0e-99	57.4
WP_000094838.1\|2078323_2078527_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_000034478.1\|2078585_2081057_-	exonuclease	A0A192Y6E0	Salmonella_phage	8.8e-56	56.6
WP_000199485.1\|2081152_2081341_-	DUF1482 family protein	NA	NA	NA	NA
WP_000449168.1\|2081337_2081526_-	cell division inhibitor	NA	NA	NA	NA
WP_000367376.1\|2082006_2082159_-	DUF1391 family protein	M4QQ57	Salicola_phage	8.7e-07	53.2
WP_000444607.1\|2082433_2083078_-	LexA family transcriptional regulator	A0A1P8DTH0	Proteus_phage	2.8e-06	24.9
WP_001261752.1\|2083175_2083403_+	cell division protein	NA	NA	NA	NA
WP_000693816.1\|2083399_2083825_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_001262409.1\|2083893_2084931_+	hypothetical protein	A0A0U2RT81	Escherichia_phage	1.1e-87	68.3
WP_000373320.1\|2084962_2085385_+	hypothetical protein	A0A0U2JGJ0	Escherichia_phage	5.0e-76	96.4
WP_000450610.1\|2085419_2086118_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	1.6e-71	59.5
WP_000702797.1\|2086139_2086364_+	hypothetical protein	A0A1B5FPG2	Escherichia_phage	3.6e-09	42.3
WP_001290006.1\|2086360_2086717_+	hypothetical protein	A0A222YY85	Escherichia_phage	3.1e-15	65.8
WP_001414276.1\|2086749_2086902_+	hypothetical protein	NA	NA	NA	NA
WP_000111243.1\|2086898_2087210_+	hypothetical protein	A0A222YY67	Escherichia_phage	2.4e-51	83.5
WP_000137954.1\|2087336_2087900_+	hypothetical protein	H6WZG0	Escherichia_phage	4.5e-48	94.9
WP_001278460.1\|2088009_2088114_+	hypothetical protein	NA	NA	NA	NA
WP_000902687.1\|2088300_2088513_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	7.6e-25	90.0
WP_001302544.1\|2088554_2088740_-	hypothetical protein	NA	NA	NA	NA
WP_001310296.1\|2088680_2088959_+	hypothetical protein	I6PCV7	Cronobacter_phage	1.3e-11	48.4
WP_001265075.1\|2088960_2090010_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	1.3e-109	54.9
WP_000904141.1\|2090022_2090382_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.5e-36	64.9
WP_001059369.1\|2090378_2091068_+	antiterminator	I6PDF8	Cronobacter_phage	1.5e-58	51.1
WP_001302069.1\|2091098_2091221_+	hypothetical protein	NA	NA	NA	NA
WP_001303558.1\|2091701_2092130_+	tellurite resistance protein	H6WZJ6	Escherichia_phage	4.9e-63	96.4
WP_000023257.1\|2092607_2094458_+	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	96.4
WP_085948178.1\|2094539_2095753_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
WP_000411809.1\|2096072_2096279_+\|holin	holin	Q6H9V8	Enterobacteria_phage	2.4e-31	100.0
WP_000731204.1\|2096283_2096628_+	YdfR family protein	B6DZ91	Enterobacteria_phage	1.7e-58	99.1
WP_000992126.1\|2096678_2097212_+	lysozyme	A0A0N7KZF9	Stx2-converting_phage	1.4e-99	97.7
WP_001303555.1\|2097367_2097550_+	hypothetical protein	NA	NA	NA	NA
WP_001280929.1\|2097562_2097694_+	hypothetical protein	A0A0N7BYT9	Escherichia_phage	9.4e-10	88.4
WP_001208680.1\|2097921_2098107_+	membrane protein	A0A1U9AJA4	Stx1_converting_phage	1.7e-20	80.3
WP_001302690.1\|2098633_2098948_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_001299328.1\|2099029_2099254_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	4.1e-21	92.7
WP_000235436.1\|2099648_2100158_+\|terminase	terminase	A0A1I9KFT4	Aeromonas_phage	1.6e-12	32.7
WP_001302857.1\|2100129_2102058_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	3.3e-260	65.9
WP_000259002.1\|2102041_2102248_+\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_000831796.1\|2102244_2103837_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	8.7e-182	60.5
2102783:2102798	attR	NA	NA	NA	NA
WP_001254002.1\|2103826_2105332_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.2e-100	54.2
WP_000256723.1\|2105368_2105716_+\|head	head decoration protein	C6ZCY1	Enterobacteria_phage	2.6e-22	58.1
WP_001301534.1\|2105773_2106040_+	hypothetical protein	NA	NA	NA	NA
WP_029208397.1\|2106021_2106762_+\|tail	phage tail protein	Q687F6	Enterobacteria_phage	3.6e-130	98.0
WP_000479117.1\|2106775_2107207_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.4e-41	68.1
WP_000533402.1\|2107233_2107647_+\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	1.6e-42	82.2
WP_000847298.1\|2110198_2110528_+\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_138625799.1\|2110937_2111969_+\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	1.1e-172	96.6
WP_122997399.1\|2111914_2112547_+\|tail	tail assembly protein	A0A0P0ZDX8	Stx2-converting_phage	3.5e-102	95.7
WP_001303882.1\|2112500_2112707_+	hypothetical protein	NA	NA	NA	NA
WP_000649829.1\|2112737_2113265_-	superoxide dismutase family protein	Q9MC02	Salmonella_phage	1.8e-59	60.5
WP_000515111.1\|2113398_2116872_+	host specificity protein J	A0A0P0ZCI5	Stx2-converting_phage	0.0e+00	95.5
WP_001230444.1\|2116939_2117539_+	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZCF6	Stx2-converting_phage	8.8e-111	99.0
WP_000268962.1\|2117603_2118917_+\|tail	tail fiber protein	A0A0P0ZE15	Stx2-converting_phage	2.8e-77	97.0
WP_001023352.1\|2118918_2119188_+\|tail	phage tail protein	A0A0P0ZEF0	Stx2-converting_phage	3.4e-46	100.0
WP_001303884.1\|2120520_2120703_-	hypothetical protein	H6WZN3	Escherichia_phage	1.1e-21	89.7
WP_001301613.1\|2121320_2122439_+	hydrogenase 1 small subunit	NA	NA	NA	NA
WP_000107391.1\|2122435_2124229_+	Ni/Fe-hydrogenase large subunit	NA	NA	NA	NA
WP_001186424.1\|2124247_2124955_+	Ni/Fe-hydrogenase b-type cytochrome subunit	NA	NA	NA	NA
WP_000003653.1\|2124951_2125539_+\|protease	hydrogenase 1 maturation protease	NA	NA	NA	NA

DBSCAN-SWA_6

2385989 : 2506550

157

Enterobacteria_phage(37.61%)

holin,head,transposase,tail,lysis,capsid,terminase,protease,integrase,tRNA,portal

attL 2450597:2450612|attR 2480164:2480179

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000952736.1\|2385989_2386811_+	NAD-dependent protein deacylase	A0A2I7S9Y2	Vibrio_phage	5.6e-23	35.6
WP_000759316.1\|2386966_2388013_-	spermidine/putrescine ABC transporter substrate-binding protein PotD	NA	NA	NA	NA
WP_000580316.1\|2388009_2388804_-	spermidine/putrescine ABC transporter permease PotC	NA	NA	NA	NA
WP_000074985.1\|2388970_2390089_-\|integrase	tyrosine-type recombinase/integrase	Q77Z04	Phage_21	1.0e-83	43.9
WP_000003742.1\|2390057_2390327_-	excisionase	NA	NA	NA	NA
WP_077699040.1\|2390388_2390778_-	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	1.3e-38	60.0
WP_000559928.1\|2390910_2391426_+	hypothetical protein	NA	NA	NA	NA
WP_001414141.1\|2391540_2391693_-	DUF1391 family protein	M4QQ57	Salicola_phage	1.0e-07	55.3
WP_000948454.1\|2392008_2392485_-	hypothetical protein	A0A2D1GNH0	Pseudomonas_phage	5.7e-12	53.4
WP_000711018.1\|2392609_2392933_+	transcriptional regulator	A0A0R6PH31	Moraxella_phage	6.2e-10	44.9
WP_000693915.1\|2392916_2393342_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_001262323.1\|2393410_2394448_+	hypothetical protein	A0A0U2RT81	Escherichia_phage	3.3e-89	79.5
WP_001301518.1\|2394479_2394902_+	hypothetical protein	A0A0U2JGJ0	Escherichia_phage	1.8e-73	91.4
WP_000451012.1\|2394935_2395652_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	2.1e-71	62.4
WP_000017339.1\|2395648_2395966_+	hypothetical protein	A0A222YXX1	Escherichia_phage	1.1e-32	70.6
WP_001310212.1\|2395962_2396265_+	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	1.9e-45	87.9
WP_001017965.1\|2396254_2396572_+	DUF4752 family protein	A0A1I9LJV1	Stx_converting_phage	2.1e-42	92.4
WP_000156547.1\|2396525_2396843_+	hypothetical protein	A0A088CQ13	Enterobacteria_phage	4.4e-45	90.0
WP_000515959.1\|2396829_2397267_+	ead/Ea22-like family protein	Q8VNQ2	Enterobacteria_phage	1.9e-38	94.0
WP_001014296.1\|2397268_2397460_+	hypothetical protein	G9L660	Escherichia_phage	1.6e-26	98.4
WP_000207955.1\|2397462_2398050_+	DUF551 domain-containing protein	K7PH57	Enterobacteria_phage	7.5e-38	45.8
WP_001278450.1\|2398165_2398270_+	hypothetical protein	NA	NA	NA	NA
WP_000887477.1\|2398458_2398671_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	3.1e-18	68.6
WP_001341388.1\|2398838_2399117_+	hypothetical protein	I6PCV7	Cronobacter_phage	5.7e-12	48.4
WP_001265168.1\|2399118_2400168_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	1.2e-107	53.4
WP_001217410.1\|2400180_2400555_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	2.1e-33	62.7
WP_000762929.1\|2400551_2401373_+	antitermination protein	K7P7B9	Enterobacteria_phage	1.3e-83	58.6
WP_000216629.1\|2401969_2402137_+	DUF3927 family protein	H6WZJ7	Escherichia_phage	1.9e-10	72.5
WP_000023170.1\|2402451_2404389_+	SASA family carbohydrate esterase	Q6H9W1	Enterobacteria_phage	2.5e-292	76.8
WP_001213059.1\|2404536_2404719_+	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	1.0e-14	67.8
WP_001289717.1\|2404756_2405026_+	DUF826 domain-containing protein	A0A2R2Z348	Escherichia_phage	8.2e-08	75.3
WP_000284518.1\|2405101_2405317_+\|holin	holin	Q6H9V8	Enterobacteria_phage	2.0e-33	100.0
WP_000731241.1\|2405321_2405666_+	YdfR family protein	A0A0P0ZD64	Stx2-converting_phage	1.7e-58	99.1
WP_000992148.1\|2405716_2406250_+	lysozyme	B6DZ92	Enterobacteria_phage	3.0e-102	99.4
WP_001056806.1\|2406520_2407090_+	hypothetical protein	A0A1I9LJR6	Stx_converting_phage	3.1e-105	100.0
WP_000539792.1\|2407089_2407236_+	hypothetical protein	A0A0P0ZE99	Stx2-converting_phage	2.6e-16	100.0
WP_001208682.1\|2407463_2407670_+	hypothetical protein	H6WRZ6	Salmonella_phage	7.1e-12	64.7
WP_000735655.1\|2407734_2407959_+	hypothetical protein	NA	NA	NA	NA
WP_000347013.1\|2408315_2408456_+	hypothetical protein	NA	NA	NA	NA
WP_001302295.1\|2408585_2408771_-	DUF3950 domain-containing protein	H6WZK6	Escherichia_phage	1.4e-19	88.5
WP_000279786.1\|2408812_2409178_+	HNH endonuclease	B6DZ96	Enterobacteria_phage	9.9e-65	99.2
WP_000958416.1\|2409467_2410031_+\|terminase	terminase small subunit	A0A0P0ZDD1	Stx2-converting_phage	4.7e-90	100.0
WP_001301491.1\|2410027_2411689_+\|terminase	terminase large subunit	A0A0P0ZD10	Stx2-converting_phage	0.0e+00	100.0
WP_000173030.1\|2411752_2413690_+\|capsid	phage major capsid protein	B6ETE8	Enterobacteria_phage	0.0e+00	100.0
WP_001063099.1\|2413734_2413956_+	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
WP_001356670.1\|2413901_2416403_+\|portal	phage portal protein	B6DZA1	Enterobacteria_phage	0.0e+00	98.8
WP_000126019.1\|2416482_2416809_+\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZDA0	Stx2-converting_phage	9.2e-54	100.0
WP_001007901.1\|2416818_2417169_+\|head	phage head closure protein	A0A0P0ZCU6	Stx2-converting_phage	7.0e-60	100.0
WP_000573374.1\|2417165_2417612_+	HK97 gp10 family phage protein	A0A0P0ZCD2	Stx2-converting_phage	8.1e-77	100.0
WP_000133388.1\|2417608_2417953_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_001275434.1\|2418018_2418735_+\|tail	tail protein	A0A0P0ZDV1	Stx2-converting_phage	1.6e-127	100.0
WP_000710952.1\|2418749_2419124_+\|tail	tail assembly protein	A0A0P0ZE84	Stx2-converting_phage	4.6e-65	100.0
WP_001453698.1\|2419219_2419429_+	DUF4035 domain-containing protein	A0A0P0ZDE6	Stx2-converting_phage	2.0e-33	100.0
WP_000212850.1\|2419481_2422724_+\|tail	phage tail tape measure protein	A0A0P0ZDY0	Stx2-converting_phage	0.0e+00	97.7
WP_000807950.1\|2422716_2423058_+\|tail	phage tail protein	A0A0P0ZBQ8	Stx2-converting_phage	3.3e-62	99.1
WP_001152182.1\|2423057_2423756_+\|tail	phage minor tail protein L	A0A0P0ZBE3	Stx2-converting_phage	8.1e-132	98.3
WP_000170104.1\|2423772_2424027_-	Arc family DNA-binding protein	NA	NA	NA	NA
WP_010904626.1\|2424136_2424247_+	Arc family DNA-binding protein	NA	NA	NA	NA
WP_000835336.1\|2424549_2425428_+	phage repressor protein/antirepressor Ant	I6R977	Salmonella_phage	2.5e-93	77.2
WP_000967271.1\|2425481_2426219_+\|tail	phage tail protein	B6ETG2	Enterobacteria_phage	8.2e-151	100.0
WP_071526731.1\|2426164_2426401_+\|tail	tail assembly protein	B6ETG3	Enterobacteria_phage	2.8e-20	80.3
WP_115801847.1\|2426413_2426503_+	hypothetical protein	NA	NA	NA	NA
WP_001301673.1\|2426522_2428871_+	type III secretion system effector E3 ubiquitin ligase NleL	NA	NA	NA	NA
WP_001301984.1\|2429461_2432863_+	type III secretion system effector EspN	A0A0N7KZG3	Stx2-converting_phage	1.7e-219	39.2
WP_001301834.1\|2434966_2435092_+	hypothetical protein	Q8HAB2	Salmonella_phage	8.7e-05	58.3
WP_001303921.1\|2435171_2435447_-	hypothetical protein	NA	NA	NA	NA
WP_000938118.1\|2435507_2436869_-	type III secretion system effector EspK	Q9MBM1	Phage_Gifsy-1	1.4e-50	29.2
WP_001303923.1\|2436989_2437202_-	hypothetical protein	NA	NA	NA	NA
WP_000799385.1\|2437232_2438096_-	spermidine/putrescine ABC transporter permease PotB	Q6GZ02	Mycoplasma_phage	6.7e-11	28.7
WP_000531594.1\|2438079_2439216_-	spermidine/putrescine ABC transporter ATP-binding protein PotA	Q6GZ03	Mycoplasma_phage	5.5e-29	39.8
WP_000359446.1\|2439465_2440692_+	peptidase T	NA	NA	NA	NA
WP_001301987.1\|2440740_2441862_-	cupin domain-containing protein	NA	NA	NA	NA
WP_000085256.1\|2442110_2443340_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	3.8e-132	56.1
WP_000953272.1\|2443704_2443893_+	AlpA family transcriptional regulator	A0A2H4JB58	uncultured_Caudovirales_phage	2.0e-13	66.0
WP_125090562.1\|2443942_2444269_-	hypothetical protein	NA	NA	NA	NA
WP_000226782.1\|2444697_2444895_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_000609225.1\|2444887_2445100_+	hypothetical protein	NA	NA	NA	NA
WP_000551675.1\|2445089_2445554_+	hypothetical protein	NA	NA	NA	NA
WP_001204985.1\|2445546_2445780_+	hypothetical protein	NA	NA	NA	NA
WP_000770178.1\|2445785_2446085_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_000833628.1\|2446081_2447482_+	AAA family ATPase	A0A2H4JFA4	uncultured_Caudovirales_phage	5.6e-116	49.6
WP_000192401.1\|2447682_2447934_+	hypothetical protein	NA	NA	NA	NA
WP_000126695.1\|2447930_2448341_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_000233304.1\|2448351_2448624_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_001301569.1\|2448580_2448709_+	hypothetical protein	NA	NA	NA	NA
WP_001132079.1\|2448750_2448975_+	hypothetical protein	NA	NA	NA	NA
WP_000796968.1\|2449226_2449433_+	hypothetical protein	NA	NA	NA	NA
WP_000907465.1\|2449432_2450488_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.5e-68	43.3
WP_000380883.1\|2450500_2450836_+\|head	head decoration protein	NA	NA	NA	NA
2450597:2450612	attL	NA	NA	NA	NA
WP_000224603.1\|2450848_2451262_+	hypothetical protein	NA	NA	NA	NA
WP_000835281.1\|2451467_2452010_+\|terminase	terminase	O64316	Escherichia_phage	1.8e-33	44.2
WP_000133424.1\|2452265_2452547_+	hypothetical protein	NA	NA	NA	NA
WP_000735407.1\|2453147_2454608_-	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
WP_001265474.1\|2454607_2455279_-	two-component system response regulator PhoP	NA	NA	NA	NA
WP_000423729.1\|2455447_2456818_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	4.2e-108	44.9
WP_001301618.1\|2456821_2457463_-	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_001301861.1\|2457498_2458605_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_000476093.1\|2458658_2459120_-	phosphatase NudJ	NA	NA	NA	NA
WP_001248690.1\|2459129_2459783_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000444477.1\|2459954_2461205_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
WP_000741454.1\|2461318_2462461_-\|integrase	tyrosine-type recombinase/integrase	O21940	Phage_21	8.1e-206	100.0
WP_000088655.1\|2462450_2462687_-	excisionase	NA	NA	NA	NA
WP_000945520.1\|2462790_2463615_+	replication protein	A0A0K2FJ31	Enterobacteria_phage	3.8e-96	69.3
WP_000788869.1\|2463611_2464313_+	Replication protein P	A0A0P0ZD31	Stx2-converting_phage	1.3e-129	99.6
WP_000145915.1\|2464309_2464612_+	protein ren	A0A0N6WES4	Escherichia_phage	1.1e-42	95.7
WP_001070446.1\|2464679_2465012_+	SMR family multidrug efflux protein EmrE	NA	NA	NA	NA
WP_001302833.1\|2465076_2465199_+	hypothetical protein	NA	NA	NA	NA
WP_000709088.1\|2465256_2466783_+	recombinase family protein	Q3HQV4	Burkholderia_phage	1.2e-31	31.1
WP_071525067.1\|2466902_2467094_+	hypothetical protein	NA	NA	NA	NA
WP_001053040.1\|2467284_2467740_+	hypothetical protein	I6PD71	Cronobacter_phage	8.6e-58	64.9
WP_000224907.1\|2467739_2467910_+	hypothetical protein	K7P7K0	Enterobacteria_phage	5.3e-13	67.9
WP_000774504.1\|2467902_2468193_+	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	2.8e-46	92.7
WP_001099695.1\|2468189_2468552_+	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	7.3e-60	95.7
WP_000971093.1\|2468548_2468689_+	YlcG family protein	K7PHH3	Enterobacteria_phage	7.7e-10	71.1
WP_001097228.1\|2468685_2469375_+	Q antiterminator encoded by prophage CP-933P	I6PDF8	Cronobacter_phage	1.7e-57	48.9
WP_000544528.1\|2469696_2470002_+\|holin	holin	A0A286N2Q5	Klebsiella_phage	7.0e-40	87.6
WP_001180487.1\|2469988_2470465_+	glycoside hydrolase family protein	K7PKV2	Enterobacteria_phage	4.3e-84	95.6
WP_010917798.1\|2470681_2470864_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	4.7e-15	93.3
WP_000738495.1\|2470954_2471248_-	serum resistance lipoprotein Bor	K7PL54	Enterobacteria_phage	1.5e-47	99.0
WP_085948178.1\|2471450_2472663_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
WP_000079504.1\|2472852_2473263_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	2.7e-71	98.5
WP_001031427.1\|2473548_2473755_+	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	5.8e-30	100.0
WP_001300120.1\|2473919_2474114_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	1.5e-27	98.4
WP_000453564.1\|2474502_2475048_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	2.6e-93	97.8
WP_001027365.1\|2475022_2476948_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.2
WP_000198153.1\|2476944_2477151_+\|head,tail	head-tail joining protein	A0A2R9YJL2	Escherichia_phage	2.2e-29	98.5
WP_001301524.1\|2477147_2478749_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.4e-307	98.7
WP_000123254.1\|2478729_2480049_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	3.4e-232	98.2
WP_001295978.1\|2480058_2480391_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	3.8e-55	99.1
2480164:2480179	attR	NA	NA	NA	NA
WP_000063265.1\|2480446_2481472_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	8.7e-191	98.8
WP_000158906.1\|2481513_2481912_+	DNA-packaging protein FI	A0A0K2FIR1	Enterobacteria_phage	3.5e-63	98.5
WP_000752995.1\|2481923_2482277_+\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	9.9e-62	99.1
WP_000975100.1\|2482288_2482867_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.3e-79	99.0
WP_000683105.1\|2482863_2483259_+\|tail	tail protein	A0A0K2FIF4	Enterobacteria_phage	1.0e-70	100.0
WP_001143002.1\|2483266_2484007_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	8.3e-127	95.9
WP_000479161.1\|2484022_2484445_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.4e-70	96.4
WP_000459457.1\|2484426_2484861_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_000840323.1\|2484853_2487403_+\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	87.3
WP_000847331.1\|2487399_2487729_+\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	2.5e-59	100.0
WP_001152612.1\|2487728_2488427_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	2.1e-132	98.7
WP_000194779.1\|2488432_2489176_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.0e-149	97.6
WP_000090920.1\|2489112_2489745_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	1.7e-96	99.5
WP_000515612.1\|2489805_2493204_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	90.7
WP_001230336.1\|2493270_2493870_+	Ail/Lom family outer membrane beta-barrel protein	A0A291AWV3	Escherichia_phage	3.0e-111	99.5
WP_000279120.1\|2493934_2496850_+	membrane protein	Q6H9S9	Enterobacteria_phage	1.1e-57	98.3
WP_000885630.1\|2496849_2497431_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	6.1e-101	93.7
WP_000488340.1\|2497550_2498441_-	manganese catalase family protein	NA	NA	NA	NA
WP_001079482.1\|2498459_2498966_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_001166090.1\|2499002_2499503_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_000134810.1\|2499581_2499764_-	general stress protein	NA	NA	NA	NA
WP_000239881.1\|2500261_2500930_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000937476.1\|2500986_2501235_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.7e-12	76.5
WP_001171554.1\|2501310_2501691_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.4e-66	100.0
WP_000612591.1\|2501687_2502035_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
WP_000998042.1\|2502084_2503623_+\|transposase	IS66-like element ISEc8 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.0e-299	99.8
WP_001226373.1\|2503925_2505410_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001201843.1\|2505596_2506550_-\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA

DBSCAN-SWA_7

2605139 : 2679786

Enterobacteria_phage(35.09%)

holin,head,transposase,tail,lysis,capsid,terminase,protease,integrase,portal

attL 2604963:2604990|attR 2664258:2664285

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2604963:2604990	attL	NA	NA	NA	NA
WP_000113674.1\|2605139_2606270_-\|integrase	tyrosine-type recombinase/integrase	O21940	Phage_21	3.4e-103	51.4
WP_000113189.1\|2606247_2606496_-	excisionase	NA	NA	NA	NA
WP_000048551.1\|2606560_2609032_-	exonuclease	A0A192Y6E0	Salmonella_phage	1.1e-58	58.2
WP_001090196.1\|2609124_2609316_-	DUF1482 family protein	NA	NA	NA	NA
WP_000449192.1\|2609312_2609501_-	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001356681.1\|2609898_2610066_+	hypothetical protein	NA	NA	NA	NA
WP_000920491.1\|2610059_2610293_+	hypothetical protein	NA	NA	NA	NA
WP_000394552.1\|2610270_2610678_-	hypothetical protein	A0A2R2Z306	Escherichia_phage	7.0e-11	37.8
WP_001171903.1\|2610700_2610919_-	hypothetical protein	NA	NA	NA	NA
WP_001240336.1\|2610991_2611291_-	hypothetical protein	NA	NA	NA	NA
WP_000787428.1\|2611554_2611962_-	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	9.8e-29	49.6
WP_000912298.1\|2612038_2612266_+	transcriptional regulator	NA	NA	NA	NA
WP_000705621.1\|2612249_2612801_+	hypothetical protein	NA	NA	NA	NA
WP_000020556.1\|2612772_2613813_+	DNA-binding protein	A0A0U2RT81	Escherichia_phage	7.9e-91	87.2
WP_001302276.1\|2613844_2614267_+	replication protein	A0A0U2JGJ0	Escherichia_phage	1.2e-77	98.6
WP_000774808.1\|2614453_2615035_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	8.6e-79	80.2
WP_001505071.1\|2615031_2615196_+	hypothetical protein	NA	NA	NA	NA
WP_001449026.1\|2615894_2616653_+	AcfC family adhesin Paa	NA	NA	NA	NA
WP_000961820.1\|2616931_2617144_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.4e-15	70.0
WP_001217394.1\|2617364_2617622_+	hypothetical protein	NA	NA	NA	NA
WP_010917803.1\|2617691_2617970_+	hypothetical protein	I6PCV7	Cronobacter_phage	2.2e-11	48.4
WP_001302148.1\|2617971_2619018_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	4.2e-108	54.2
WP_000904166.1\|2619030_2619390_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	3.6e-35	60.9
WP_000640048.1\|2619398_2619929_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	9.3e-72	72.6
WP_000917750.1\|2620170_2620368_+	hypothetical protein	S5MQK8	Escherichia_phage	1.0e-28	98.5
WP_064761991.1\|2622067_2622253_+	hypothetical protein	Q5MBW5	Stx1-converting_phage	4.6e-26	94.6
WP_000143067.1\|2622372_2624226_+	DUF1737 domain-containing protein	H6WZJ9	Escherichia_phage	0.0e+00	97.9
WP_000284517.1\|2624375_2624591_+\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	4.5e-33	98.6
WP_000731259.1\|2624595_2624940_+	YdfR family protein	B6DZ91	Enterobacteria_phage	4.5e-59	100.0
WP_000992137.1\|2624990_2625524_+	lysozyme	B6DZ92	Enterobacteria_phage	3.5e-103	100.0
WP_001056806.1\|2625794_2626364_+	hypothetical protein	A0A1I9LJR6	Stx_converting_phage	3.1e-105	100.0
WP_000539792.1\|2626363_2626510_+	hypothetical protein	A0A0P0ZE99	Stx2-converting_phage	2.6e-16	100.0
WP_001082601.1\|2626517_2626985_+\|lysis	lysis protein	Q9EYC9	Enterobacteria_phage	1.1e-71	92.2
WP_001302717.1\|2627448_2627763_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_001303940.1\|2627844_2628069_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	1.7e-19	90.6
WP_032161313.1\|2628084_2628342_-	hypothetical protein	A0A0K2FJC5	Escherichia_phage	1.3e-10	91.4
WP_000867498.1\|2628455_2629001_+\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	9.6e-80	83.3
WP_001027230.1\|2628975_2630901_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	98.1
WP_000198153.1\|2630897_2631104_+\|head,tail	head-tail joining protein	A0A2R9YJL2	Escherichia_phage	2.2e-29	98.5
WP_001301524.1\|2631100_2632702_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.4e-307	98.7
WP_000123254.1\|2632682_2634002_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	3.4e-232	98.2
WP_001295978.1\|2634011_2634344_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	3.8e-55	99.1
WP_000063265.1\|2634399_2635425_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	8.7e-191	98.8
WP_000158906.1\|2635466_2635865_+	DNA-packaging protein FI	A0A0K2FIR1	Enterobacteria_phage	3.5e-63	98.5
WP_000753016.1\|2635876_2636230_+\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	1.9e-57	92.3
WP_000975020.1\|2636244_2636778_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	5.9e-58	66.7
WP_000683063.1\|2636774_2637170_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	3.3e-58	81.7
WP_000235090.1\|2637177_2637930_+\|tail	phage tail protein	Q687F6	Enterobacteria_phage	5.8e-136	100.0
WP_000479046.1\|2637943_2638366_+\|tail	phage minor tail protein G	Q687F5	Enterobacteria_phage	2.4e-70	97.9
WP_000533440.1\|2638392_2638806_+\|tail	phage tail assembly protein T	Q687F4	Enterobacteria_phage	3.2e-43	83.2
WP_072643101.1\|2638786_2641399_+\|tail	phage tail tape measure protein	Q9EYE1	Enterobacteria_phage	0.0e+00	94.5
WP_000847298.1\|2641395_2641725_+\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_001151105.1\|2641724_2642423_+\|tail	phage minor tail protein L	A0A0P0ZBE3	Stx2-converting_phage	1.2e-130	97.8
WP_000194801.1\|2642433_2643177_+\|tail	phage tail protein	Q9EYE4	Enterobacteria_phage	7.0e-150	99.6
WP_122989782.1\|2643122_2643752_+\|tail	tail assembly protein	Q6H9T3	Enterobacteria_phage	2.7e-102	96.6
WP_072643102.1\|2643992_2646818_+	host specificity protein J	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	72.0
WP_001228334.1\|2646885_2647485_+	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	1.0e-106	96.0
WP_000216534.1\|2647636_2648941_+\|tail	tail fiber protein	A0A0P0ZE15	Stx2-converting_phage	3.9e-79	97.5
WP_001023474.1\|2648942_2649212_+\|tail	phage tail protein	A0A1U9AJC2	Stx1_converting_phage	3.2e-44	98.9
WP_001025672.1\|2650238_2651564_-	type III secretion system effector NleA	H6WZN2	Escherichia_phage	1.9e-214	81.2
WP_024262009.1\|2651831_2652020_+	hypothetical protein	NA	NA	NA	NA
WP_106409364.1\|2653161_2653284_+	hypothetical protein	Q687E5	Enterobacteria_phage	3.8e-05	91.3
WP_000950979.1\|2653390_2654302_+	type III secretion system effector kinase NleH1-2	A5LH48	Enterobacteria_phage	3.0e-134	82.2
WP_000938103.1\|2654367_2654937_+	T3SS effector caspase inhibitor NleF	NA	NA	NA	NA
WP_000998048.1\|2655902_2657441_-\|transposase	IS66-like element ISEc8 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.5e-300	100.0
WP_000612591.1\|2657490_2657838_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
WP_001303943.1\|2658554_2658833_-	hypothetical protein	NA	NA	NA	NA
WP_001414184.1\|2659260_2659407_+	hypothetical protein	NA	NA	NA	NA
WP_001303944.1\|2659543_2660191_-	T3SS effector E3 ubiquitin-protein ligase NleG	B6ETE1	Enterobacteria_phage	1.6e-41	41.1
WP_001144877.1\|2660374_2660965_+	T3SS effector guanine nucleotide exchange factor EspM1	NA	NA	NA	NA
WP_001302903.1\|2662693_2663122_+	DUF1076 domain-containing protein	B6DZB9	Enterobacteria_phage	1.4e-22	42.1
WP_000147167.1\|2663715_2663934_-	hypothetical protein	NA	NA	NA	NA
WP_001079499.1\|2664435_2664942_-	ferritin-like domain-containing protein	NA	NA	NA	NA
2664258:2664285	attR	NA	NA	NA	NA
WP_001056491.1\|2664987_2665488_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_000807651.1\|2665573_2665753_-	general stress protein	NA	NA	NA	NA
WP_000443092.1\|2666133_2666940_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_000209521.1\|2666939_2668133_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_001302292.1\|2668144_2669503_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	4.3e-36	40.7
WP_000763520.1\|2669506_2671102_-	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	5.0e-52	38.2
WP_001194604.1\|2671101_2672664_-	anthranilate synthase component I	NA	NA	NA	NA
WP_001700591.1\|2672755_2672800_-	trp operon leader peptide	NA	NA	NA	NA
WP_001285675.1\|2672937_2673819_+	5'-3' exoribonuclease	NA	NA	NA	NA
WP_001295575.1\|2673815_2674436_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_001302160.1\|2674463_2676047_+	DUF2207 domain-containing protein	NA	NA	NA	NA
WP_001291216.1\|2676259_2677132_+	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_001278878.1\|2677171_2677762_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_000559268.1\|2677758_2678517_-	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	6.7e-07	23.9
WP_000422055.1\|2678736_2679786_+\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5

DBSCAN-SWA_8

2951252 : 3041954

113

Stx2-converting_phage(43.56%)

holin,head,transposase,tail,capsid,terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000214712.1\|2951252_2951456_+	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	1.6e-11	55.2
WP_000527769.1\|2951491_2952952_-	mannitol dehydrogenase family protein	H8ZJP8	Ostreococcus_tauri_virus	1.9e-42	29.6
WP_000347470.1\|2953040_2954324_-	MHS family MFS transporter	NA	NA	NA	NA
WP_016241229.1\|2954383_2954698_+	DinI-like family protein	Q687E4	Enterobacteria_phage	2.4e-27	83.3
WP_001480712.1\|2954694_2954829_-	hypothetical protein	NA	NA	NA	NA
WP_001143804.1\|2954859_2955501_-	DUF1076 domain-containing protein	B6DZC0	Enterobacteria_phage	3.8e-104	96.7
WP_001356599.1\|2955582_2956212_-	DUF1076 domain-containing protein	B6DZB9	Enterobacteria_phage	6.1e-78	91.5
WP_001131658.1\|2956284_2956860_-	DUF1076 domain-containing protein	H6WZN1	Escherichia_phage	4.1e-89	88.9
WP_138625800.1\|2956973_2957243_-\|tail	phage tail protein	H6WZN0	Escherichia_phage	9.3e-44	97.8
WP_000268849.1\|2957244_2958558_-\|tail	tail fiber protein	A0A0P0ZE15	Stx2-converting_phage	3.8e-82	98.6
WP_001230508.1\|2958622_2959222_-	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZE39	Stx2-converting_phage	1.2e-110	100.0
WP_000143597.1\|2959289_2961803_-	host specificity protein J	B6DZB5	Enterobacteria_phage	0.0e+00	99.5
WP_072643105.1\|2961799_2963368_-	host specificity protein J	A0A0P0ZDT4	Stx2-converting_phage	3.9e-299	98.6
WP_050439450.1\|2963710_2964343_-\|tail	tail assembly protein	B6ETG3	Enterobacteria_phage	3.9e-101	97.1
WP_000194720.1\|2964288_2965032_-\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	5.0e-148	97.6
WP_001303180.1\|2965042_2965741_-\|tail	phage minor tail protein L	A0A0P0ZD89	Stx2-converting_phage	2.9e-129	97.4
WP_000807954.1\|2965740_2966082_-\|tail	phage tail protein	A0A0P0ZBQ8	Stx2-converting_phage	5.1e-63	100.0
WP_000212925.1\|2966074_2969317_-\|tail	phage tail tape measure protein	A0A0P0ZDY0	Stx2-converting_phage	0.0e+00	97.6
WP_001453698.1\|2969368_2969578_-	DUF4035 domain-containing protein	A0A0P0ZDE6	Stx2-converting_phage	2.0e-33	100.0
WP_001030063.1\|2969673_2970048_-\|tail	tail assembly protein	A0A0N7KZA2	Stx2-converting_phage	7.8e-65	100.0
WP_001275508.1\|2970053_2970770_-\|tail	tail protein	A0A0P0ZD29	Stx2-converting_phage	2.9e-129	100.0
WP_000133388.1\|2970828_2971173_-	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_000573374.1\|2971169_2971616_-	HK97 gp10 family phage protein	A0A0P0ZCD2	Stx2-converting_phage	8.1e-77	100.0
WP_001007901.1\|2971612_2971963_-\|head	phage head closure protein	A0A0P0ZCU6	Stx2-converting_phage	7.0e-60	100.0
WP_000125988.1\|2971972_2972299_-\|head,tail	phage gp6-like head-tail connector protein	B6ETF0	Enterobacteria_phage	7.0e-54	100.0
WP_001063023.1\|2974339_2974561_-	hypothetical protein	A0A0P0ZD92	Stx2-converting_phage	3.8e-35	98.6
WP_000173065.1\|2974605_2976543_-\|capsid	phage major capsid protein	A0A0P0ZCT9	Stx2-converting_phage	0.0e+00	99.4
WP_001303179.1\|2976606_2978268_-\|terminase	terminase large subunit	A0A0N7KZG0	Stx2-converting_phage	0.0e+00	99.1
WP_000958392.1\|2978264_2978828_-\|terminase	terminase small subunit	B6DZ97	Enterobacteria_phage	3.6e-82	93.5
WP_001477518.1\|2979019_2979154_-	hypothetical protein	NA	NA	NA	NA
WP_032173279.1\|2979116_2979482_-	HNH endonuclease	B6DZ96	Enterobacteria_phage	4.9e-64	98.3
WP_000095736.1\|2979523_2979751_+	DUF3950 domain-containing protein	A0A0P0ZE23	Stx2-converting_phage	1.7e-35	100.0
WP_012816791.1\|2980175_2980361_-	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_000539792.1\|2980588_2980735_-	hypothetical protein	A0A0P0ZE99	Stx2-converting_phage	2.6e-16	100.0
WP_001056806.1\|2980734_2981304_-	hypothetical protein	A0A1I9LJR6	Stx_converting_phage	3.1e-105	100.0
WP_000992148.1\|2981574_2982108_-	lysozyme	B6DZ92	Enterobacteria_phage	3.0e-102	99.4
WP_000731241.1\|2982158_2982503_-	YdfR family protein	A0A0P0ZD64	Stx2-converting_phage	1.7e-58	99.1
WP_000411805.1\|2982507_2982714_-\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	4.0e-31	98.5
WP_000023184.1\|2983161_2985012_-	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	98.9
WP_001302123.1\|2985489_2985921_-	tellurite resistance protein	H6WZJ6	Escherichia_phage	1.6e-66	96.5
WP_000301797.1\|2986371_2987085_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000917763.1\|2987220_2987418_-	hypothetical protein	S5MQK8	Escherichia_phage	8.9e-28	96.9
WP_000640035.1\|2987642_2988197_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.0e-65	67.4
WP_001217444.1\|2988259_2988565_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	7.1e-32	66.3
WP_001265229.1\|2988577_2989627_-	DUF968 domain-containing protein	U5P0K4	Shigella_phage	1.2e-110	54.6
WP_000191871.1\|2989628_2989901_-	hypothetical protein	NA	NA	NA	NA
WP_000756596.1\|2990022_2990367_-	YgiW/YdeI family stress tolerance OB fold protein	A0A1I9LJU6	Stx_converting_phage	6.1e-56	99.1
WP_000935259.1\|2990486_2990699_-	type I toxin-antitoxin system Hok family toxin	A0A0P0ZAX5	Stx2-converting_phage	6.0e-30	100.0
WP_000104474.1\|2990932_2991490_-	DUF551 domain-containing protein	A0A0N7KZV3	Escherichia_phage	2.8e-34	41.7
WP_000683609.1\|2991491_2991710_-	DUF4014 family protein	A0A2R2Z311	Escherichia_phage	2.3e-21	72.2
WP_001289673.1\|2991837_2992149_-	hypothetical protein	A0A0U2QV73	Escherichia_phage	7.2e-56	92.2
WP_000699809.1\|2992141_2992369_-	hypothetical protein	A0A1B5FPG2	Escherichia_phage	5.1e-11	49.3
WP_000603384.1\|2992365_2992647_-	DNA-binding protein	A0A222YXX1	Escherichia_phage	1.0e-29	73.6
WP_000450627.1\|2992679_2993396_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	3.3e-72	62.8
WP_001379651.1\|2993429_2993852_-	replication protein	A0A0U2JGJ0	Escherichia_phage	5.7e-72	90.0
WP_001356791.1\|2993883_2994939_-	hypothetical protein	A0A0U2RT81	Escherichia_phage	1.6e-83	84.7
WP_000693878.1\|2995007_2995433_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_001416688.1\|2996051_2996390_+	peptidase S24	H9C160	Pectobacterium_phage	1.9e-06	30.1
WP_000380316.1\|2996682_2996835_+	DUF1391 family protein	M4QQ57	Salicola_phage	5.1e-07	53.2
WP_000394548.1\|2996846_2997485_+	hypothetical protein	A0A2R2Z306	Escherichia_phage	2.5e-07	41.9
WP_001133037.1\|2997485_2997695_-	hypothetical protein	NA	NA	NA	NA
WP_000449175.1\|2998259_2998448_+	cell division inhibitor	NA	NA	NA	NA
WP_000199475.1\|2998444_2998633_+	DUF1482 family protein	NA	NA	NA	NA
WP_000102123.1\|2998725_2999970_+	exonuclease	H6WRX1	Salmonella_phage	1.4e-86	50.3
WP_016241229.1\|3000608_3000923_+	DinI-like family protein	Q687E4	Enterobacteria_phage	2.4e-27	83.3
WP_001171554.1\|3001885_3002266_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.4e-66	100.0
WP_000612591.1\|3002262_3002610_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
WP_000998048.1\|3002659_3004198_+\|transposase	IS66-like element ISEc8 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.5e-300	100.0
WP_001121225.1\|3004780_3005431_-	DUF1076 domain-containing protein	B6ETE1	Enterobacteria_phage	1.2e-121	99.1
WP_010917823.1\|3005415_3005763_-	hypothetical protein	B6ETE2	Enterobacteria_phage	6.1e-48	96.8
WP_001131642.1\|3006141_3006717_-	DUF1076 domain-containing protein	H6WZN1	Escherichia_phage	4.1e-57	60.5
WP_001023362.1\|3006830_3007100_-\|tail	phage tail protein	H6WZN0	Escherichia_phage	6.4e-45	98.9
WP_000268842.1\|3007101_3008325_-\|tail	tail fiber protein	B6DZB7	Enterobacteria_phage	8.7e-81	94.8
WP_001230508.1\|3008389_3008989_-	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZE39	Stx2-converting_phage	1.2e-110	100.0
WP_001304111.1\|3009056_3009272_-	hypothetical protein	Q9LA64	Enterobacterial_phage	1.0e-32	97.2
WP_105626756.1\|3009274_3012535_-	host specificity protein J	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	92.2
WP_001179509.1\|3012722_3013160_-\|tail	phage minor tail protein L	A0A0P0ZD44	Stx2-converting_phage	5.0e-63	100.0
WP_000807954.1\|3013159_3013501_-\|tail	phage tail protein	A0A0P0ZBQ8	Stx2-converting_phage	5.1e-63	100.0
WP_000212818.1\|3013493_3016736_-\|tail	phage tail tape measure protein	A0A0P0ZDY0	Stx2-converting_phage	0.0e+00	97.6
WP_001453746.1\|3016783_3016993_-	DUF4035 domain-containing protein	A0A0P0ZED8	Stx2-converting_phage	2.6e-33	100.0
WP_000710952.1\|3017088_3017463_-\|tail	tail assembly protein	A0A0P0ZE84	Stx2-converting_phage	4.6e-65	100.0
WP_001275434.1\|3017477_3018194_-\|tail	tail protein	A0A0P0ZDV1	Stx2-converting_phage	1.6e-127	100.0
WP_000133388.1\|3018259_3018604_-	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_000573391.1\|3018600_3019047_-	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
WP_001007905.1\|3019043_3019394_-\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000125988.1\|3019403_3019730_-\|head,tail	phage gp6-like head-tail connector protein	B6ETF0	Enterobacteria_phage	7.0e-54	100.0
WP_001356761.1\|3019732_3022312_-\|portal	phage portal protein	A0A0P0ZDD0	Stx2-converting_phage	0.0e+00	98.0
WP_001063099.1\|3022257_3022479_-	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
WP_000173030.1\|3022523_3024461_-\|capsid	phage major capsid protein	B6ETE8	Enterobacteria_phage	0.0e+00	100.0
WP_001303187.1\|3024524_3026186_-\|terminase	terminase large subunit	A0A0P0ZD10	Stx2-converting_phage	0.0e+00	99.8
WP_000958392.1\|3026182_3026746_-\|terminase	terminase small subunit	B6DZ97	Enterobacteria_phage	3.6e-82	93.5
WP_032173279.1\|3027035_3027401_-	HNH endonuclease	B6DZ96	Enterobacteria_phage	4.9e-64	98.3
WP_000095736.1\|3027442_3027670_+	DUF3950 domain-containing protein	A0A0P0ZE23	Stx2-converting_phage	1.7e-35	100.0
WP_012816791.1\|3028094_3028280_-	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_000539792.1\|3028507_3028654_-	hypothetical protein	A0A0P0ZE99	Stx2-converting_phage	2.6e-16	100.0
WP_001056806.1\|3028653_3029223_-	hypothetical protein	A0A1I9LJR6	Stx_converting_phage	3.1e-105	100.0
WP_000992137.1\|3029493_3030027_-	lysozyme	B6DZ92	Enterobacteria_phage	3.5e-103	100.0
WP_000731241.1\|3030077_3030422_-	YdfR family protein	A0A0P0ZD64	Stx2-converting_phage	1.7e-58	99.1
WP_000411805.1\|3030426_3030633_-\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	4.0e-31	98.5
WP_000023202.1\|3031081_3032932_-	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	98.4
WP_001303509.1\|3033410_3033839_-	tellurite resistance protein	H6WZJ6	Escherichia_phage	4.4e-64	97.8
WP_001302069.1\|3034322_3034445_-	hypothetical protein	NA	NA	NA	NA
WP_001217455.1\|3035160_3035520_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	5.9e-38	67.5
WP_001265161.1\|3035532_3036582_-	DUF968 domain-containing protein	U5P0K4	Shigella_phage	1.4e-108	53.7
WP_012779366.1\|3036583_3036862_-	hypothetical protein	I6PCV7	Cronobacter_phage	5.7e-12	48.4
WP_000887477.1\|3037029_3037242_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	3.1e-18	68.6
WP_001278450.1\|3037430_3037535_-	hypothetical protein	NA	NA	NA	NA
WP_000206793.1\|3037650_3038235_-	DUF551 domain-containing protein	A0A0P0ZD75	Stx2-converting_phage	1.9e-33	84.8
WP_001118159.1\|3038291_3038687_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	7.8e-31	51.4
WP_000788938.1\|3039497_3040238_-	ATP-binding protein	A0A088CBP4	Shigella_phage	4.6e-125	90.2
WP_000095669.1\|3040244_3041207_-	DNA-binding protein	U5P0A0	Shigella_phage	4.8e-82	57.3
WP_000693943.1\|3041229_3041655_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_000172738.1\|3041651_3041954_-	transcriptional regulator	K7PHA1	Enterobacteria_phage	8.6e-06	34.8

DBSCAN-SWA_9

3353799 : 3404921

Enterobacteria_phage(63.33%)

tail,integrase,tRNA,transposase

attL 3347023:3347038|attR 3405000:3405015

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3347023:3347038	attL	NA	NA	NA	NA
WP_001025318.1\|3353799_3355533_+\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	4.0e-87	33.7
WP_001302043.1\|3355709_3356198_+	lysozyme inhibitor LprI family protein	NA	NA	NA	NA
WP_001259575.1\|3356317_3356710_-	flagellar protein FlhE	NA	NA	NA	NA
WP_000067016.1\|3356709_3358788_-	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
WP_001278932.1\|3358780_3359929_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA
WP_000983602.1\|3360130_3360775_-	protein phosphatase CheZ	NA	NA	NA	NA
WP_000763867.1\|3360785_3361175_-	chemotaxis protein CheY	A0A2K9L4R0	Tupanvirus	1.3e-06	32.0
WP_000036370.1\|3361189_3362239_-	chemotaxis response regulator protein-glutamate methylesterase	Q56AR1	Bacillus_thuringiensis_phage	1.0e-05	32.8
WP_000204340.1\|3362241_3363102_-	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
WP_000483251.1\|3363120_3364722_-	methyl-accepting chemotaxis protein IV	A0A2H4J162	uncultured_Caudovirales_phage	5.4e-14	29.8
WP_001302081.1\|3364767_3366429_-	methyl-accepting chemotaxis protein II	A0A2H4J162	uncultured_Caudovirales_phage	5.8e-11	38.4
WP_000147302.1\|3366571_3367075_-	chemotaxis protein CheW	NA	NA	NA	NA
WP_001322280.1\|3367095_3369060_-	chemotaxis protein CheA	NA	NA	NA	NA
WP_000795630.1\|3369064_3369991_-	flagellar motor protein MotB	NA	NA	NA	NA
WP_000906325.1\|3369987_3370875_-	flagellar motor stator protein MotA	NA	NA	NA	NA
WP_001291603.1\|3371001_3371580_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA
WP_001302091.1\|3371582_3371933_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA
WP_000122432.1\|3372712_3373141_+	universal stress protein UspC	NA	NA	NA	NA
WP_000089029.1\|3373147_3374572_-	alpha,alpha-trehalose-phosphate synthase	NA	NA	NA	NA
WP_001302045.1\|3374546_3375347_-	trehalose-phosphatase	NA	NA	NA	NA
WP_001302082.1\|3375513_3376500_-	L-arabinose ABC transporter permease AraH	NA	NA	NA	NA
WP_001187819.1\|3376514_3378029_-	L-arabinose ABC transporter ATP-binding protein AraG	A0A2H4PQG7	Staphylococcus_phage	4.3e-13	27.1
WP_000548680.1\|3378098_3379088_-	arabinose ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000179461.1\|3379884_3380388_+	non-heme ferritin-like protein	NA	NA	NA	NA
WP_000084172.1\|3380467_3380719_-	DUF2766 domain-containing protein	NA	NA	NA	NA
WP_010723106.1\|3380833_3380920_-	stress response protein AzuC	NA	NA	NA	NA
WP_001237873.1\|3381181_3381505_+	hypothetical protein	NA	NA	NA	NA
WP_000917208.1\|3381675_3382173_+	non-heme ferritin	NA	NA	NA	NA
WP_000377224.1\|3382209_3382449_-	YecH family protein	NA	NA	NA	NA
WP_000797566.1\|3382640_3383852_+	tyrosine transporter TyrP	NA	NA	NA	NA
WP_000847882.1\|3383913_3384579_-	UPF0149 family protein YecA	NA	NA	NA	NA
WP_001300279.1\|3384935_3385937_-\|integrase	tyrosine-type recombinase/integrase	Q94N03	Haemophilus_virus	4.2e-105	58.5
WP_000865208.1\|3385942_3386290_-	DUF2511 domain-containing protein	NA	NA	NA	NA
WP_000290345.1\|3386319_3386970_-	hypothetical protein	NA	NA	NA	NA
WP_000786773.1\|3386985_3387390_-	transcriptional regulator	Q6QID2	Burkholderia_phage	2.7e-23	53.8
WP_001673482.1\|3387479_3387617_-	hypothetical protein	NA	NA	NA	NA
WP_000014504.1\|3387688_3387892_+	DNA-binding protein	P79674	Haemophilus_phage	3.1e-07	45.2
WP_000739029.1\|3387913_3388264_+	DUF4761 family protein	A0A0A7NV42	Enterobacteria_phage	8.6e-50	81.9
WP_000159449.1\|3388274_3388553_+	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	4.8e-35	80.4
WP_000514287.1\|3388564_3388807_+	DUF4754 family protein	A0A0A7NQ71	Enterobacteria_phage	1.2e-37	98.8
WP_000021655.1\|3388803_3388917_+	hypothetical protein	A0A0A7NPW7	Enterobacteria_phage	6.2e-10	100.0
WP_000991913.1\|3389009_3389426_+	hypothetical protein	NA	NA	NA	NA
WP_000985157.1\|3389449_3389653_+	hypothetical protein	A0A0A7NPS8	Enterobacteria_phage	2.5e-25	83.6
WP_000153707.1\|3389649_3389916_+	winged helix-turn-helix transcriptional regulator	A0A0A7NV47	Enterobacteria_phage	3.1e-31	77.3
WP_000104305.1\|3389912_3390212_+	hypothetical protein	A0A0A7NRX6	Enterobacteria_phage	1.6e-41	89.9
WP_000775057.1\|3390534_3390765_+	derepression protein	A0A0A7NV48	Enterobacteria_phage	5.9e-31	94.7
WP_000599379.1\|3390837_3391203_+	hypothetical protein	A0A0A7NRY1	Enterobacteria_phage	6.6e-61	96.7
WP_000123463.1\|3391209_3394032_+	replication endonuclease	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	97.7
WP_000686523.1\|3394108_3395068_+	recombinase	A0A0A7NPX4	Enterobacteria_phage	1.2e-178	99.1
WP_000211280.1\|3395072_3395387_+	peptide transporter	A0A0A7NPT5	Enterobacteria_phage	1.1e-19	52.9
WP_000257965.1\|3396592_3397009_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	3.6e-63	84.7
WP_000954203.1\|3397052_3397625_-	serine acetyltransferase	A0A1L2JYI5	Streptococcus_phage	1.0e-07	34.4
WP_000979955.1\|3397781_3398270_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.0e-85	100.0
WP_000763327.1\|3401072_3401201_-\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	3.0e-16	97.6
WP_000665314.1\|3401236_3401602_-\|tail	tail protein	A0A0A7NPZ0	Enterobacteria_phage	1.7e-56	98.3
WP_000290456.1\|3401656_3402169_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.1e-92	99.4
WP_000005444.1\|3402168_3403353_-\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	1.7e-219	96.7
WP_000132765.1\|3403510_3403834_+	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	2.1e-42	97.8
WP_032161583.1\|3403784_3404921_-\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
3405000:3405015	attR	NA	NA	NA	NA

DBSCAN-SWA_10

3462502 : 3511016

Enterobacteria_phage(34.88%)

holin,head,transposase,tail,protease,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001023455.1\|3462502_3462772_-\|tail	phage tail protein	Q687E5	Enterobacteria_phage	2.4e-44	98.9
WP_000268850.1\|3462773_3464087_-\|tail	tail fiber protein	A0A0P0ZCC1	Stx2-converting_phage	5.3e-84	99.3
WP_001230514.1\|3464151_3464751_-	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZE39	Stx2-converting_phage	5.7e-110	99.0
WP_072643111.1\|3464818_3468298_-	host specificity protein J	B6DZB5	Enterobacteria_phage	0.0e+00	98.7
WP_123007081.1\|3468538_3469168_-\|tail	tail assembly protein	A0A0P0ZEN7	Stx2-converting_phage	3.9e-101	95.2
WP_000194801.1\|3469113_3469857_-\|tail	phage tail protein	Q9EYE4	Enterobacteria_phage	7.0e-150	99.6
WP_001301816.1\|3469867_3470566_-\|tail	phage minor tail protein L	Q9EYE3	Enterobacteria_phage	1.5e-133	100.0
WP_000847298.1\|3470565_3470895_-\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_000082465.1\|3470891_3473471_-\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	79.6
WP_000533402.1\|3473451_3473865_-\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	1.6e-42	82.2
WP_000479117.1\|3473891_3474323_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.4e-41	68.1
WP_029208397.1\|3474336_3475077_-\|tail	phage tail protein	Q687F6	Enterobacteria_phage	3.6e-130	98.0
WP_001301534.1\|3475058_3475325_-	hypothetical protein	NA	NA	NA	NA
WP_000256723.1\|3475382_3475730_-\|head	head decoration protein	C6ZCY1	Enterobacteria_phage	2.6e-22	58.1
WP_001254002.1\|3475766_3477272_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.2e-100	54.2
WP_000831796.1\|3477261_3478854_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	8.7e-182	60.5
WP_000259002.1\|3478850_3479057_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_001301919.1\|3480941_3481184_-	DNA packaging protein	NA	NA	NA	NA
WP_000998048.1\|3481233_3482772_-\|transposase	IS66-like element ISEc8 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.5e-300	100.0
WP_000612598.1\|3482821_3483169_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.8e-61	99.1
WP_001171554.1\|3483165_3483546_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.4e-66	100.0
WP_000235421.1\|3483621_3483897_-	hypothetical protein	A0A1I9KFT4	Aeromonas_phage	2.4e-10	51.5
WP_000411791.1\|3484647_3484854_+\|holin	holin	Q6H9V8	Enterobacteria_phage	4.5e-30	97.1
WP_001303880.1\|3484816_3485161_-	hypothetical protein	NA	NA	NA	NA
WP_000138558.1\|3485109_3485382_-	hypothetical protein	NA	NA	NA	NA
WP_001303879.1\|3485314_3485509_+	hypothetical protein	NA	NA	NA	NA
WP_001003118.1\|3485541_3486075_+	lysozyme	A0A1U9AJ98	Stx1_converting_phage	3.1e-99	94.4
WP_000675931.1\|3486295_3486409_+	hypothetical protein	A0A2L1IV24	Escherichia_phage	6.6e-12	100.0
WP_012816791.1\|3486630_3486816_+	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_001303878.1\|3487343_3487658_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_085948178.1\|3487862_3489076_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
WP_000874392.1\|3489251_3491102_-	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	96.1
WP_042853491.1\|3491219_3491423_+	hypothetical protein	Q8VNP0	Enterobacteria_phage	1.8e-28	96.7
WP_000261909.1\|3491869_3492583_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_001303877.1\|3492677_3492917_-	hypothetical protein	Q9MC00	Enterobacteria_phage	7.7e-18	98.0
WP_000265265.1\|3493203_3494022_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000090264.1\|3494173_3494545_-	antitermination protein	Q777W5	Enterobacteria_phage	4.0e-53	83.2
WP_001217436.1\|3494534_3494906_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.3e-35	63.7
WP_001265172.1\|3494918_3495968_-	DUF968 domain-containing protein	U5P0K4	Shigella_phage	1.2e-110	54.9
WP_001341388.1\|3495969_3496248_-	hypothetical protein	I6PCV7	Cronobacter_phage	5.7e-12	48.4
WP_001013642.1\|3496415_3496628_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.5e-25	95.4
WP_000955173.1\|3496672_3496810_+	hypothetical protein	Q7Y2Q9	Escherichia_phage	5.4e-08	96.6
WP_097561939.1\|3496972_3497164_-	hypothetical protein	NA	NA	NA	NA
WP_000160650.1\|3497175_3497949_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_001151233.1\|3498300_3498714_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	9.8e-61	89.1
WP_000450992.1\|3498729_3499500_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	6.1e-80	64.5
WP_000788745.1\|3499521_3500268_-	ATP-binding protein	A0A088CBP4	Shigella_phage	3.1e-113	83.8
WP_001205823.1\|3500274_3501366_-	hypothetical protein	V5URT9	Shigella_phage	5.1e-133	70.0
WP_000273724.1\|3501444_3501900_+	hypothetical protein	NA	NA	NA	NA
WP_000693855.1\|3502106_3502532_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_000887453.1\|3502515_3502788_-	hypothetical protein	A0A0U2S629	Escherichia_phage	1.1e-12	45.8
WP_000986592.1\|3502896_3503298_+	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	7.4e-13	54.5
WP_000536233.1\|3503325_3503517_+	hypothetical protein	NA	NA	NA	NA
WP_001303876.1\|3503516_3503804_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_071525099.1\|3503805_3504024_+	hypothetical protein	NA	NA	NA	NA
WP_000379575.1\|3504081_3504237_+	DUF1391 family protein	M4QQ57	Salicola_phage	3.0e-07	53.2
WP_000394511.1\|3504378_3504768_+	hypothetical protein	NA	NA	NA	NA
WP_001133046.1\|3504954_3505140_-	hypothetical protein	NA	NA	NA	NA
WP_001303875.1\|3505141_3505447_-	hypothetical protein	NA	NA	NA	NA
WP_000413705.1\|3505713_3505902_+	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001098307.1\|3505898_3506090_+	DUF1482 family protein	NA	NA	NA	NA
WP_000034474.1\|3506183_3508655_+	exonuclease	A0A192Y6E0	Salmonella_phage	8.8e-56	56.6
WP_000273151.1\|3508722_3508965_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_000375128.1\|3510356_3511016_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	1.8e-48	55.3

DBSCAN-SWA_11

3741942 : 3780043

Enterobacteria_phage(48.84%)

holin,tail,lysis,terminase,integrase,protease,portal

attL 3741527:3741541|attR 3780117:3780131

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3741527:3741541	attL	NA	NA	NA	NA
WP_001247925.1\|3741942_3742641_-\|protease	T3SS effector zinc metalloprotease NleD	NA	NA	NA	NA
WP_096976694.1\|3742693_3742897_+	hypothetical protein	NA	NA	NA	NA
WP_000951025.1\|3742871_3743753_-	type III secretion system effector kinase NleH1-1	A5LH48	Enterobacteria_phage	1.1e-146	89.8
WP_072127173.1\|3743922_3744084_-\|tail	phage tail protein	K7PMH7	Enterobacteria_phage	3.9e-13	72.5
WP_115801843.1\|3744580_3745600_-\|protease	type III secretion system effector zinc metalloprotease NleC	NA	NA	NA	NA
WP_000950813.1\|3745633_3746614_-	type III secretion system effector arginine glycosyltransferase NleB2	Q8HAB2	Salmonella_phage	2.9e-87	49.5
WP_001024022.1\|3746790_3747060_-\|tail	phage tail protein	A0A1I9LJT0	Stx_converting_phage	4.9e-45	98.9
WP_000741889.1\|3747061_3748378_-\|tail	tail fiber protein	H6WZM9	Escherichia_phage	1.2e-70	95.6
WP_001233141.1\|3748437_3749037_-	Ail/Lom family outer membrane beta-barrel protein	H6WZM8	Escherichia_phage	1.8e-103	92.5
WP_000515426.1\|3749107_3752521_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	97.1
WP_000090841.1\|3752581_3753190_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.4e-100	94.1
WP_000194779.1\|3753126_3753870_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.0e-149	97.6
WP_001152360.1\|3753875_3754574_-\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	3.9e-134	99.1
WP_000447253.1\|3754583_3754913_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.7e-60	100.0
WP_000371994.1\|3754912_3757978_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	98.9
WP_001161009.1\|3757949_3758279_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
WP_001300035.1\|3758287_3758674_-\|tail	phage minor tail protein G	A0A291AWW5	Escherichia_phage	1.6e-65	100.0
WP_000211123.1\|3758734_3759478_-\|tail	phage tail protein	A5LH35	Enterobacteria_phage	9.5e-131	98.0
WP_001079422.1\|3759488_3759890_-\|tail	tail protein	A5LH34	Enterobacteria_phage	2.0e-71	98.5
WP_000677094.1\|3759886_3760465_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	6.1e-101	99.0
WP_001283153.1\|3760476_3760752_-	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	2.3e-45	100.0
WP_001097050.1\|3760744_3761068_-	DUF2190 family protein	A0A291AWX2	Escherichia_phage	8.5e-52	100.0
WP_001136596.1\|3761154_3763182_-\|protease	Clp protease ClpP	K7PGT6	Enterobacteria_phage	0.0e+00	99.2
WP_127446149.1\|3763126_3763462_-\|portal	phage portal protein	A5LH29	Enterobacteria_phage	9.1e-57	99.1
WP_010904538.1\|3763583_3764708_-\|portal	phage portal protein	K7PJP3	Enterobacteria_phage	5.4e-194	99.4
WP_001072975.1\|3764635_3764848_-	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
WP_000934096.1\|3764844_3766947_-\|terminase	phage terminase large subunit family protein	A0A291AWY5	Escherichia_phage	0.0e+00	96.6
WP_000349509.1\|3766946_3767438_-	DUF1441 family protein	A0A291AWV8	Escherichia_phage	1.3e-72	87.2
WP_001303851.1\|3767427_3767706_-	hypothetical protein	NA	NA	NA	NA
WP_001139679.1\|3768112_3768265_-	hypothetical protein	K7PKL2	Enterobacteria_phage	8.9e-20	96.0
WP_000092302.1\|3768252_3768720_-\|lysis	lysis protein	A0A291AWW3	Escherichia_phage	9.4e-76	97.4
WP_000075107.1\|3768716_3769214_-	lysozyme	A0A1B5FP97	Escherichia_phage	7.1e-90	98.2
WP_000284524.1\|3769213_3769429_-\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	4.5e-33	98.6
WP_012578864.1\|3769571_3769970_+	hypothetical protein	H6WZJ8	Escherichia_phage	6.9e-11	83.3
WP_000499454.1\|3770050_3770209_-	DUF3927 family protein	NA	NA	NA	NA
WP_001302581.1\|3770294_3771038_-	hypothetical protein	NA	NA	NA	NA
WP_001097238.1\|3771221_3771911_-	Q antiterminator encoded by prophage CP-933P	I6PDF8	Cronobacter_phage	1.5e-58	48.1
WP_032160865.1\|3771925_3772048_-	YlcG family protein	NA	NA	NA	NA
WP_000750155.1\|3772385_3773345_+	lipid A deacylase LpxR family protein	NA	NA	NA	NA
WP_001028854.1\|3773556_3774222_-	serine/threonine protein phosphatase	Q5TJL8	Enterobacteria_phage	5.0e-131	99.5
WP_001108055.1\|3774218_3774839_-	recombination protein NinG	Q716C3	Shigella_phage	1.6e-94	96.1
WP_000567001.1\|3774831_3775002_-	protein ninF	Q716C4	Shigella_phage	7.9e-25	96.4
WP_001254218.1\|3774998_3775181_-	NinE family protein	Q8H9Z6	Enterobacteria_phage	4.8e-28	96.7
WP_000186844.1\|3775878_3776559_+	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	3.5e-132	99.6
WP_000682316.1\|3776555_3776738_+	DUF1317 domain-containing protein	A0A0P0ZAS9	Stx2-converting_phage	4.1e-27	95.0
WP_000548536.1\|3776710_3776902_+	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	1.1e-25	96.8
WP_023436627.1\|3776912_3777194_+	hypothetical protein	A0A0P0ZE02	Stx2-converting_phage	1.6e-46	97.8
WP_000763363.1\|3777292_3777514_+	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	6.4e-35	98.6
WP_000120056.1\|3777724_3778327_-	hypothetical protein	NA	NA	NA	NA
WP_071525073.1\|3778451_3778637_-	hypothetical protein	NA	NA	NA	NA
WP_000545728.1\|3778569_3778737_+	hypothetical protein	A0A0K2FJ46	Enterobacteria_phage	1.3e-27	98.2
WP_001303849.1\|3778776_3778995_+	excisionase	Q77WA4	Escherichia_phage	3.7e-35	100.0
WP_000533643.1\|3778972_3780043_+\|integrase	tyrosine-type recombinase/integrase	K7P6P6	Enterobacteria_phage	3.9e-202	100.0
3780117:3780131	attR	NA	NA	NA	NA

DBSCAN-SWA_12

4323250 : 4420281

Enterobacteria_phage(26.67%)

plate,tail,integrase,transposase

attL 4349774:4349792|attR 4406468:4406486

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000998048.1\|4323250_4324789_-\|transposase	IS66-like element ISEc8 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.5e-300	100.0
WP_000612591.1\|4324838_4325186_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
WP_001171554.1\|4325182_4325563_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.4e-66	100.0
WP_000803998.1\|4325826_4326090_+	type B 50S ribosomal protein L31	NA	NA	NA	NA
WP_000866436.1\|4326089_4326230_+	50S ribosomal protein L36	NA	NA	NA	NA
WP_001147284.1\|4326299_4326491_-	hypothetical protein	NA	NA	NA	NA
WP_001303810.1\|4326552_4326843_-	hypothetical protein	NA	NA	NA	NA
WP_000389022.1\|4327315_4327858_+	ECP biosynthesis operon DNA-binding transcriptional regulator EcpR	NA	NA	NA	NA
WP_000730972.1\|4327932_4328520_+	common pilus major fimbrillin subunit EcpA	NA	NA	NA	NA
WP_000716386.1\|4328577_4329246_+	fimbrial chaperone EcpB	NA	NA	NA	NA
WP_001131063.1\|4329271_4331797_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_001265657.1\|4331786_4333430_+	fimbrial adhesin EcpD	NA	NA	NA	NA
WP_001301550.1\|4333398_4334109_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_001303809.1\|4334421_4334751_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_001019920.1\|4334998_4335613_-	YagU family protein	NA	NA	NA	NA
WP_000070685.1\|4336030_4336720_+	aldehyde dehydrogenase iron-sulfur subunit	NA	NA	NA	NA
WP_000643340.1\|4336716_4337673_+	xanthine dehydrogenase family protein subunit M	NA	NA	NA	NA
WP_000667043.1\|4337669_4339868_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	A0A0P0I429	Acinetobacter_phage	1.5e-38	25.7
WP_000121344.1\|4339877_4340834_+	molybdenum cofactor insertion chaperone PaoD	NA	NA	NA	NA
WP_000171065.1\|4341012_4342140_-	MFS transporter	NA	NA	NA	NA
WP_001303808.1\|4342281_4343340_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_010917758.1\|4343585_4344488_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001301751.1\|4345190_4345469_-	hypothetical protein	NA	NA	NA	NA
WP_000361969.1\|4345635_4346358_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_000687183.1\|4346456_4347356_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000205213.1\|4348031_4348988_+	hypothetical protein	NA	NA	NA	NA
WP_000016225.1\|4349120_4351454_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	72.5
4349774:4349792	attL	NA	NA	NA	NA
WP_000562750.1\|4351467_4351791_-	DUF5375 family protein	NA	NA	NA	NA
WP_001071227.1\|4351790_4352012_-	hypothetical protein	NA	NA	NA	NA
WP_000973389.1\|4352008_4352566_-	ash family protein	Q7M2A7	Enterobacteria_phage	9.3e-30	64.9
WP_001244581.1\|4352562_4352823_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	1.3e-23	65.1
WP_000968317.1\|4354506_4355058_+	Polarity suppression protein	NA	NA	NA	NA
WP_001185340.1\|4355063_4355336_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_100068595.1\|4355483_4355687_+	hypothetical protein	NA	NA	NA	NA
WP_000350115.1\|4355745_4356312_-	hypothetical protein	NA	NA	NA	NA
WP_000695296.1\|4356311_4356515_-	hypothetical protein	NA	NA	NA	NA
WP_000647286.1\|4356511_4356901_-	hypothetical protein	NA	NA	NA	NA
WP_000999326.1\|4356931_4357564_-	AAA family ATPase	NA	NA	NA	NA
WP_000251694.1\|4357556_4358015_-	hypothetical protein	NA	NA	NA	NA
WP_001303996.1\|4358014_4358632_-	hypothetical protein	NA	NA	NA	NA
WP_000082144.1\|4358604_4359021_-	hypothetical protein	NA	NA	NA	NA
WP_001130487.1\|4359024_4360206_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	2.4e-144	61.3
WP_000246059.1\|4361168_4361912_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000355475.1\|4362735_4363509_+	hypothetical protein	A0A289ZIY5	Serratia_phage	5.0e-50	44.7
WP_000904979.1\|4363566_4364121_-	site-specific DNA recombinase	A0A0F7LA37	Escherichia_phage	2.8e-87	88.4
WP_001115553.1\|4364150_4364561_+\|tail	tail fiber protein	A0A0F7LBW5	Escherichia_phage	2.2e-65	97.6
WP_000344820.1\|4364581_4365025_+\|tail	tail assembly chaperone	A0A0F7LDZ0	Escherichia_phage	7.0e-81	97.3
WP_000805544.1\|4364996_4365590_-\|tail	tail assembly protein	Q9MCR5	Enterobacteria_phage	5.2e-55	61.7
WP_001096963.1\|4365589_4366384_-\|tail	tail fiber protein	K7PH60	Enterobacterial_phage	2.8e-80	92.9
WP_000788819.1\|4366383_4366695_-	hypothetical protein	A0A0M5M1K4	Salmonella_phage	9.7e-29	73.2
WP_000251069.1\|4367646_4367940_-	hypothetical protein	A2SY75	Escherichia_phage	3.7e-46	100.0
WP_000437875.1\|4368058_4368259_-	hypothetical protein	A4KWT7	Enterobacteria_phage	4.3e-30	100.0
WP_001274756.1\|4368359_4369073_+	LexA family transcriptional regulator	A4KWV9	Enterobacteria_phage	3.5e-130	99.2
WP_000708831.1\|4369200_4369584_+	hypothetical protein	A0A0R6PGY5	Moraxella_phage	4.4e-07	36.2
WP_085948178.1\|4369609_4370822_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
WP_001303805.1\|4371149_4371395_+	transcription antitermination protein	J3JZZ6	Escherichia_phage	1.0e-12	90.5
WP_000893282.1\|4372464_4373718_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	3.4e-96	47.2
WP_001285288.1\|4373729_4374833_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
WP_000749881.1\|4375120_4376176_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	7.7e-118	60.9
WP_000174701.1\|4376214_4376616_-	sigma factor-binding protein Crl	NA	NA	NA	NA
WP_000189536.1\|4376673_4377918_-	esterase FrsA	NA	NA	NA	NA
WP_001291990.1\|4378009_4378468_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA
WP_001293009.1\|4378728_4380186_+	cytosol nonspecific dipeptidase	NA	NA	NA	NA
WP_077626217.1\|4380242_4380779_-	peptide chain release factor H	NA	NA	NA	NA
WP_001303804.1\|4380711_4380978_-	hypothetical protein	NA	NA	NA	NA
WP_001059871.1\|4381284_4381737_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001263495.1\|4381746_4382145_-	type II toxin-antitoxin system mRNA interferase toxin YafO	NA	NA	NA	NA
WP_000554757.1\|4382147_4382441_-	type I toxin-antitoxin system antitoxin YafN	NA	NA	NA	NA
WP_001226186.1\|4382492_4383548_-	DNA polymerase IV	NA	NA	NA	NA
WP_001301640.1\|4383618_4384389_-	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA
WP_001303130.1\|4384348_4386088_+	flagellar type III secretion system protein FlhA	NA	NA	NA	NA
WP_000543891.1\|4386905_4387679_-	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	1.2e-19	37.7
WP_000729705.1\|4387864_4388125_+	type II toxin-antitoxin system antitoxin DinJ	NA	NA	NA	NA
WP_001303998.1\|4388143_4388404_+	type II toxin-antitoxin system mRNA interferase toxin YafQ	NA	NA	NA	NA
WP_001225679.1\|4388559_4389300_+	murein L,D-transpeptidase	NA	NA	NA	NA
WP_001301698.1\|4389270_4390038_-	class II glutamine amidotransferase	NA	NA	NA	NA
WP_000284050.1\|4390142_4390721_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	1.1e-14	32.0
WP_000973071.1\|4390960_4393405_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_000532698.1\|4393447_4393921_-	C-lysozyme inhibitor	NA	NA	NA	NA
WP_001118031.1\|4394074_4394845_+	2-oxoglutaramate amidase	NA	NA	NA	NA
WP_000027427.1\|4394962_4396135_-\|transposase	ISAs1-like element ISEc26 family transposase	NA	NA	NA	NA
WP_120795385.1\|4396215_4396401_+	protein YncO	NA	NA	NA	NA
WP_000247943.1\|4396315_4396579_-	hypothetical protein	NA	NA	NA	NA
WP_001145876.1\|4396780_4398541_-	RHS repeat protein	A0A2H4JHK7	uncultured_Caudovirales_phage	1.0e-21	42.3
WP_000420853.1\|4398543_4399680_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_001690273.1\|4400426_4401026_-	sel1 repeat family protein	NA	NA	NA	NA
WP_100199880.1\|4401094_4402402_-	RHS repeat protein	A0A2H4JHK7	uncultured_Caudovirales_phage	6.1e-24	45.6
WP_000509129.1\|4403641_4407874_-	RHS repeat protein	A0A2H4JHK7	uncultured_Caudovirales_phage	2.1e-25	46.1
4406468:4406486	attR	NA	NA	NA	NA
WP_000103125.1\|4407949_4410091_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	4.1e-25	25.0
WP_001142958.1\|4410300_4410819_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_000037399.1\|4411515_4412016_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_000123970.1\|4412050_4412275_+	hypothetical protein	NA	NA	NA	NA
WP_000056994.1\|4412325_4413717_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_000599596.1\|4413807_4414221_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_000393844.1\|4414224_4416075_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_000348794.1\|4416038_4417121_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_001113707.1\|4417145_4418426_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_001080153.1\|4418422_4418947_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_000246434.1\|4418949_4420281_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_13

4858531 : 4917542

Klosneuvirus(12.5%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001162171.1\|4858531_4859884_-\|protease	metalloprotease PmbA	NA	NA	NA	NA
WP_000166270.1\|4859977_4860529_+	ribosome-associated protein	NA	NA	NA	NA
WP_001219792.1\|4860684_4862058_-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA
WP_000853749.1\|4862233_4863232_+	class 1 fructose-bisphosphatase	A0A1V0SKX4	Klosneuvirus	2.1e-69	42.6
WP_000596020.1\|4863264_4864260_-	sugar ABC transporter permease YjfF	NA	NA	NA	NA
WP_001301928.1\|4864246_4865269_-	ABC transporter permease	NA	NA	NA	NA
WP_000265942.1\|4866924_4867881_-	galactofuranose ABC transporter substrate-binding protein YtfQ	NA	NA	NA	NA
WP_000055075.1\|4868190_4868721_+	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	1.2e-55	63.3
WP_000239579.1\|4868800_4869151_-	endoribonuclease toxin ChpB	NA	NA	NA	NA
WP_001223210.1\|4869144_4869396_-	type II toxin-antitoxin system ChpS family antitoxin	NA	NA	NA	NA
WP_001219160.1\|4869607_4869949_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_000060931.1\|4869951_4873731_-	autotransporter assembly complex protein TamB	NA	NA	NA	NA
WP_001269327.1\|4873727_4875461_-	autotransporter assembly complex protein TamA	NA	NA	NA	NA
WP_001301936.1\|4875666_4876305_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_000935036.1\|4876627_4877971_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_000689228.1\|4878049_4878256_-	DUF1107 domain-containing protein	NA	NA	NA	NA
WP_000175287.1\|4878580_4879135_+	YtfJ family protein	NA	NA	NA	NA
WP_000937659.1\|4879197_4880136_-	hypothetical protein	NA	NA	NA	NA
WP_000886884.1\|4880347_4881088_-	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_000589487.1\|4881277_4883221_+	2',3'-cyclic-nucleotide 2'-phosphodiesterase	NA	NA	NA	NA
WP_000084622.1\|4883338_4883719_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000560631.1\|4883807_4884668_+	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA
WP_001301505.1\|4884775_4885741_+	DMT family transporter	NA	NA	NA	NA
WP_000331454.1\|4885848_4886511_+	iron-sulfur cluster repair protein YtfE	NA	NA	NA	NA
WP_000228346.1\|4886555_4887968_-	D-serine/D-alanine/glycine transporter	NA	NA	NA	NA
WP_000211225.1\|4888276_4888897_-	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_001119481.1\|4889114_4889753_+	cell division protein YtfB	NA	NA	NA	NA
WP_000826431.1\|4889887_4891096_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A077SL42	Escherichia_phage	5.4e-208	93.0
WP_000604943.1\|4891103_4891535_+\|transposase	IS200/IS605-like element IS609 family transposase	A0A1S5RHE3	Helicobacter_phage	5.7e-43	59.9
WP_001301745.1\|4892157_4892952_+	DUF2686 family protein	NA	NA	NA	NA
WP_001196062.1\|4893022_4893472_-	50S ribosomal protein L9	NA	NA	NA	NA
WP_000135199.1\|4893513_4893741_-	30S ribosomal protein S18	NA	NA	NA	NA
WP_001296681.1\|4893745_4894060_-	primosomal replication protein N	NA	NA	NA	NA
WP_001216676.1\|4894066_4894462_-	30S ribosomal protein S6	NA	NA	NA	NA
WP_000492914.1\|4894788_4895064_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_001170812.1\|4895192_4895879_-	L-ribulose-5-phosphate 4-epimerase	NA	NA	NA	NA
WP_000949515.1\|4895878_4896733_-	L-ribulose-5-phosphate 3-epimerase	NA	NA	NA	NA
WP_000056760.1\|4896742_4897393_-	3-keto-L-gulonate-6-phosphate decarboxylase UlaD	NA	NA	NA	NA
WP_000776517.1\|4897406_4897871_-	PTS ascorbate transporter subunit IIA	NA	NA	NA	NA
WP_000218362.1\|4897880_4898186_-	PTS ascorbate transporter subunit IIB	NA	NA	NA	NA
WP_001301921.1\|4898201_4899599_-	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA
WP_001295191.1\|4899953_4901018_+	L-ascorbate 6-phosphate lactonase	NA	NA	NA	NA
WP_000133631.1\|4901125_4901881_+	HTH-type transcriptional regulator UlaR	NA	NA	NA	NA
WP_000569696.1\|4901877_4902627_-	esterase	NA	NA	NA	NA
WP_000254636.1\|4902808_4903138_+	biofilm peroxide resistance protein BsmA	NA	NA	NA	NA
WP_000811566.1\|4903286_4903562_+\|protease	protease activator YjfN	NA	NA	NA	NA
WP_001301849.1\|4903678_4905304_-	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA
WP_000943960.1\|4905387_4906551_-	glutathionylspermidine synthase family protein	B2ZXR7	Ralstonia_phage	8.3e-81	43.8
WP_000101670.1\|4906553_4907192_-	DUF1190 domain-containing protein	NA	NA	NA	NA
WP_000547760.1\|4907201_4907600_-	DUF350 domain-containing protein	NA	NA	NA	NA
WP_000012572.1\|4907617_4908277_-	YjfK family protein	NA	NA	NA	NA
WP_000511966.1\|4908327_4909026_-	PspA/IM30 family protein	NA	NA	NA	NA
WP_000220128.1\|4909044_4909446_-	DUF2170 family protein	NA	NA	NA	NA
WP_001293282.1\|4909572_4910304_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_000076303.1\|4910484_4912926_-	ribonuclease R	Q0GXV6	Lactococcus_phage	2.4e-66	32.9
WP_001177639.1\|4912964_4913390_-	nitric oxide-sensing transcriptional repressor NsrR	NA	NA	NA	NA
WP_000527955.1\|4913594_4914893_-	adenylosuccinate synthase	W5S5V7	Pithovirus	2.2e-66	35.9
WP_001089295.1\|4914996_4915194_-	DUF2065 domain-containing protein	NA	NA	NA	NA
WP_001232412.1\|4915275_4916280_-\|protease	protease modulator HflC	NA	NA	NA	NA
WP_000312488.1\|4916282_4917542_-\|protease	FtsH protease activity modulator HflK	A0A1L2CVV0	Pectobacterium_phage	3.6e-05	25.5

DBSCAN-SWA_14

5054421 : 5069086

Enterobacteria_phage(37.5%)

tail,integrase,tRNA

attL 5050262:5050277|attR 5067791:5067806

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5050262:5050277	attL	NA	NA	NA	NA
WP_000918366.1\|5054421_5055837_-	replicative DNA helicase	O80281	Escherichia_phage	8.3e-200	78.1
WP_000235522.1\|5055919_5056903_+	quinone oxidoreductase	NA	NA	NA	NA
WP_000891404.1\|5057068_5057311_-	envelope stress response protein PspG	NA	NA	NA	NA
WP_000543819.1\|5057444_5058482_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_000332269.1\|5058570_5059668_+\|integrase	site-specific integrase	S5MDN5	Escherichia_phage	2.1e-211	99.5
WP_001217541.1\|5059729_5059978_+	DinI-like family protein	A5LH55	Enterobacteria_phage	3.1e-38	98.8
WP_001143816.1\|5060138_5060780_-	DUF1076 domain-containing protein	B6DZC0	Enterobacteria_phage	1.1e-106	99.1
WP_072140863.1\|5060861_5061491_-	DUF1076 domain-containing protein	B6DZB9	Enterobacteria_phage	1.4e-79	93.5
WP_001118000.1\|5061563_5062136_-	DUF1076 domain-containing protein	H6WZN1	Escherichia_phage	2.5e-46	53.2
WP_001023355.1\|5062247_5062517_-\|tail	phage tail protein	A0A0P0ZEF0	Stx2-converting_phage	2.7e-43	96.6
WP_000268962.1\|5062518_5063832_-\|tail	tail fiber protein	A0A0P0ZE15	Stx2-converting_phage	2.8e-77	97.0
WP_001230514.1\|5063896_5064496_-	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZE39	Stx2-converting_phage	5.7e-110	99.0
WP_000008211.1\|5065817_5066354_+	5'-deoxynucleotidase	U5P0T3	Shigella_phage	3.1e-99	98.3
WP_001242740.1\|5066344_5066695_+	hypothetical protein	A0A0P0ZBF8	Stx2-converting_phage	1.6e-56	94.8
WP_000145668.1\|5066691_5066976_+	hypothetical protein	I6S1S6	Salmonella_phage	1.3e-40	83.9
WP_001449563.1\|5066985_5067165_+	hypothetical protein	H9C170	Pectobacterium_phage	1.2e-20	76.3
WP_000829415.1\|5067311_5067509_+	hypothetical protein	K7PH57	Enterobacteria_phage	7.5e-11	68.6
WP_001093918.1\|5067853_5068135_+	hypothetical protein	K7PGU0	Enterobacteria_phage	8.7e-45	98.9
5067791:5067806	attR	NA	NA	NA	NA
WP_000956557.1\|5068552_5069086_-	hypothetical protein	K7PKJ4	Enterobacteria_phage	1.1e-99	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP040573

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

24023 : 76200

Macacine_betaherpesvirus(30.77%)

protease,integrase,transposase

attL 54968:54982|attR 75925:75939

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001034100.1\|24023_27926_+\|protease	serine protease autotransporter EspP	Q9LA58	Enterobacterial_phage	9.5e-238	40.4
WP_071525077.1\|29323_29503_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_001302199.1\|30104_30926_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_000975743.1\|30925_32032_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_000550559.1\|32121_33843_+	phosphoethanolamine transferase CptA	NA	NA	NA	NA
WP_001302181.1\|33916_34915_+	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
WP_001171554.1\|35282_35663_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.4e-66	100.0
WP_000612591.1\|35659_36007_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
WP_000998048.1\|36056_37595_+\|transposase	IS66-like element ISEc8 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.5e-300	100.0
WP_001302198.1\|37970_38186_-	hypothetical protein	NA	NA	NA	NA
WP_001358886.1\|38248_40945_+\|protease	metalloprotease StcE	NA	NA	NA	NA
WP_001302175.1\|41031_41907_+	type II secretion system protein GspC	NA	NA	NA	NA
WP_001449993.1\|41964_43875_+	variant type II secretion system secretin EtpD	NA	NA	NA	NA
WP_000092338.1\|43874_45380_+	type II secretion system ATPase GspE	NA	NA	NA	NA
WP_001173152.1\|45381_46605_+	type II secretion system inner membrane protein GspF	NA	NA	NA	NA
WP_001231211.1\|46635_47070_+	type II secretion system major pseudopilin GspG	NA	NA	NA	NA
WP_000082929.1\|47066_47621_+	type II secretion system minor pseudopilin GspH	NA	NA	NA	NA
WP_000173396.1\|47635_47983_+	type II secretion system minor pseudopilin GspI	NA	NA	NA	NA
WP_000082782.1\|47979_48579_+	type II secretion system minor pseudopilin GspJ	NA	NA	NA	NA
WP_000776550.1\|48575_49553_+	type II secretion system minor pseudopilin GspK	NA	NA	NA	NA
WP_071525076.1\|49591_50764_+	type II secretion system protein GspL	NA	NA	NA	NA
WP_001004187.1\|50750_51263_+	type II secretion system protein M	NA	NA	NA	NA
WP_000096786.1\|51320_52154_+	prepilin peptidase	NA	NA	NA	NA
WP_000971918.1\|52245_52647_+	GspS family T2SS pilot lipoprotein variant EptO	NA	NA	NA	NA
WP_000520917.1\|54561_55053_+	enterohemolysin-activating lysine-acyltransferase EhxC	NA	NA	NA	NA
54968:54982	attL	NA	NA	NA	NA
WP_000217733.1\|55054_58051_+	enterohemolysin EhxA	NA	NA	NA	NA
WP_000987091.1\|58100_60221_+	enterohemolysin T1SS ABC transporter permease/ATPase EhxB	W8CYL7	Bacillus_phage	7.1e-46	30.2
WP_001213545.1\|60224_61664_+	enterohemolysin T1SS ABC transporter subunit EhxD	NA	NA	NA	NA
WP_001303402.1\|61730_61925_+	hypothetical protein	NA	NA	NA	NA
WP_001358890.1\|61954_62239_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_001302186.1\|62239_62437_-	hypothetical protein	NA	NA	NA	NA
WP_010891288.1\|62407_62638_+	hypothetical protein	NA	NA	NA	NA
WP_001066920.1\|62758_63499_+\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	2.0e-24	57.6
WP_000361615.1\|63783_64761_-	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	5.1e-100	58.9
WP_071525074.1\|65073_65262_+	hypothetical protein	NA	NA	NA	NA
WP_000708307.1\|65168_65369_-	hypothetical protein	NA	NA	NA	NA
WP_001248529.1\|65365_65986_-	hypothetical protein	NA	NA	NA	NA
WP_010891291.1\|65982_66666_-	DNA-binding protein	NA	NA	NA	NA
WP_000813634.1\|67124_67343_+	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA
WP_001159868.1\|67344_67650_+	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA
WP_000016989.1\|67650_68457_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	3.7e-56	99.1
WP_077631973.1\|69133_69214_-	AMP nucleosidase	A0A0N7BTS3	Escherichia_phage	1.5e-07	100.0
WP_085948178.1\|69179_70393_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	1.7e-169	99.7
WP_000772446.1\|71396_72563_+	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	7.0e-229	100.0
WP_000817031.1\|72562_73534_+	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	4.8e-175	100.0
WP_001349526.1\|73918_74191_+	hypothetical protein	NA	NA	NA	NA
WP_000273919.1\|74228_75131_+	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_010891292.1\|75134_75440_+	hypothetical protein	NA	NA	NA	NA
WP_000085945.1\|75516_76200_+	DNA methylase	A0A2I7RE86	Vibrio_phage	8.7e-30	37.9
75925:75939	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040572

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP040573

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection