CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040390	Escherichia coli strain A1_136 chromosome, complete genome	4 crisprs	RT,csa3,cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,WYL	0	19	13	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040390_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040390_1

1124125-1124824

Orphan

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

11 spacers

The CRISPR arrays of NZ_CP040390_1

>merge|NZ_CP040390|1|1124125-1124824|PILER-CR,CRISPRCasFinder,CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCGTTTGCTGAGTGTGCATACACACTTGAACATCAGAGTTCCCCGCGCCAGCGGGGATAAACCGCTATCAGTAACAACCTGGTAAATATCGGTTTTGAGTTCCCCGCGCCAGCGGGGATAAACCGTGCACGCCCTGCCGGAATCTCCCCTCGCTCTCGAGTTCCCCGCGCCAGCGGGGATAAACCGAGTAAGCCGGTTGATTATCGCCAGGGATATTAGAGTTCCCCGCGCCAGCGGGGATAAACCGAGCAACAGGTATTTCATATGGCCTGCCGTGCTGAGTTCCCCGCGCCAGCGGGGATAAACCGGCCAGCGGCGCTGAGTACGACGACCTGATTAAGAGTTCCCCGCGCCAGCGGGGATAAACCGTTTGTTTTGATGATTTATCAGTATATGAATTGGAGTTCCCCGCGCCAGCGGGGATAAACCGATTTTTGCGCGGCCTGCATGAAACCAGTGGCAAAGTTCCCCGCGCCAGCGGGGATAAACCGACCGTTGCTACACATATGATCAGGCATGTGCCGAGTTCCCCGCGCCAGCGGGGATAAACCGGACGATGAGACGCCCTGGTGTGCCGCGTTCGTGAGTTCCCCGCGCCAGCGGGGATAAACCGCGTTTAGCTCCGCAATGTTGGATATCACTGATGAGTTCCCCGCACCAGCGGGAATAAACCA

>NZ_CP040390|1|1|1124125-1124763|PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGCTGAGTGTGCATACACACTTGAACATCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTATCAGTAACAACCTGGTAAATATCGGTTTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TGCACGCCCTGCCGGAATCTCCCCTCGCTCTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTAAGCCGGTTGATTATCGCCAGGGATATTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGCAACAGGTATTTCATATGGCCTGCCGTGCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCCAGCGGCGCTGAGTACGACGACCTGATTAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGTTTTGATGATTTATCAGTATATGAATTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTTTGCGCGGCCTGCATGAAACCAGTGGCA
AAGTTCCCCGCGCCAGCGGGGATAAACCG	ACCGTTGCTACACATATGATCAGGCATGTGCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACGATGAGACGCCCTGGTGTGCCGCGTTCGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP040390|1|1|1124125-1124824|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGCTGAGTGTGCATACACACTTGAACATCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTATCAGTAACAACCTGGTAAATATCGGTTTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TGCACGCCCTGCCGGAATCTCCCCTCGCTCTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTAAGCCGGTTGATTATCGCCAGGGATATTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGCAACAGGTATTTCATATGGCCTGCCGTGCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCCAGCGGCGCTGAGTACGACGACCTGATTAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGTTTTGATGATTTATCAGTATATGAATTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTTTGCGCGGCCTGCATGAAACCAGTGGCA
AAGTTCCCCGCGCCAGCGGGGATAAACCG	ACCGTTGCTACACATATGATCAGGCATGTGCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACGATGAGACGCCCTGGTGTGCCGCGTTCGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTTAGCTCCGCAATGTTGGATATCACTGAT
GAGTTCCCCGCACCAGCGGGAATAAACCA

>NZ_CP040390|1|1|1124125-1124824|CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGCTGAGTGTGCATACACACTTGAACATCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTATCAGTAACAACCTGGTAAATATCGGTTTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TGCACGCCCTGCCGGAATCTCCCCTCGCTCTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTAAGCCGGTTGATTATCGCCAGGGATATTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGCAACAGGTATTTCATATGGCCTGCCGTGCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCCAGCGGCGCTGAGTACGACGACCTGATTAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGTTTTGATGATTTATCAGTATATGAATTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTTTGCGCGGCCTGCATGAAACCAGTGGCA
AAGTTCCCCGCGCCAGCGGGGATAAACCG	ACCGTTGCTACACATATGATCAGGCATGTGCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACGATGAGACGCCCTGGTGTGCCGCGTTCGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTTAGCTCCGCAATGTTGGATATCACTGAT
GAGTTCCCCGCACCAGCGGGAATAAACCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040390.1\|WP_001199973.1\|1123114_1123786_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP040390.1\|WP_000254738.1\|1117439_1117775_+\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP040390.1\|WP_001098106.1\|1130965_1132303_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP040390.1\|WP_001551563.1\|1113530_1114832_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP040390.1\|WP_000186450.1\|1110717_1113474_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP040390.1\|WP_000039721.1\|1125461_1126940_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP040390.1\|WP_001551559.1\|1128562_1129348_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP040390.1\|WP_106106683.1\|1134016_1135365_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP040390.1\|WP_001130266.1\|1135499_1136075_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP040390.1\|WP_001551562.1\|1114879_1117114_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP040390.1\|WP_001521165.1\|1133056_1133917_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP040390.1\|WP_001521167.1\|1132280_1133060_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP040390.1\|WP_001071643.1\|1117846_1118638_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP040390.1\|WP_001551560.1\|1126966_1128244_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP040390.1\|WP_000036723.1\|1120590_1121889_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP040390.1\|WP_000109536.1\|1136091_1136352_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP040390.1\|WP_000581937.1\|1117191_1117440_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP040390.1\|WP_000210878.1\|1118865_1120503_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP040390.1\|WP_001551561.1\|1121948_1122821_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP040390.1\|WP_000059301.1\|1129417_1130872_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354

Protein	Function_ID	Function_description	E-value
NZ_CP040390.1\|WP_001199973.1\|1123114_1123786_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
NZ_CP040390.1\|WP_000254738.1\|1117439_1117775_+\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
NZ_CP040390.1\|WP_001098106.1\|1130965_1132303_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.1165e-50
NZ_CP040390.1\|WP_001551563.1\|1113530_1114832_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP040390.1\|WP_000186450.1\|1110717_1113474_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP040390.1\|WP_000039721.1\|1125461_1126940_-\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	2.76431e-108
NZ_CP040390.1\|WP_001551559.1\|1128562_1129348_+\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.56263e-137
NZ_CP040390.1\|WP_106106683.1\|1134016_1135365_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	8.20133e-53
NZ_CP040390.1\|WP_001130266.1\|1135499_1136075_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
NZ_CP040390.1\|WP_001551562.1\|1114879_1117114_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP040390.1\|WP_001521165.1\|1133056_1133917_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	8.34461e-89
NZ_CP040390.1\|WP_001521167.1\|1132280_1133060_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	8.81851e-61
NZ_CP040390.1\|WP_001071643.1\|1117846_1118638_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	9.36315e-160
NZ_CP040390.1\|WP_001551560.1\|1126966_1128244_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	7.75283e-29
NZ_CP040390.1\|WP_000036723.1\|1120590_1121889_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP040390.1\|WP_000109536.1\|1136091_1136352_-\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	4.39108e-42
NZ_CP040390.1\|WP_000581937.1\|1117191_1117440_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP040390.1\|WP_000210878.1\|1118865_1120503_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP040390.1\|WP_001551561.1\|1121948_1122821_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	9.30455e-97
NZ_CP040390.1\|WP_000059301.1\|1129417_1130872_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.6361e-82

>NZ_CP040390.1|WP_001199973.1|1123114_1123786_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP040390.1|WP_001551561.1|1121948_1122821_-|YgcG-family-protein
MRYFILIFTFVCSFVAAQPTIVPSLQQQVTDLTSSLNSQEKKELTYKLESIFNNTQVQIAVLIVPTTKDETIEKYATRVFDNWRLGDAKRNDGILIIVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAQGLELAINALNNQLTSQHQYPANPSEIESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSSVCISAIYLLDLFLFSDKTFSSAVFFFFFTFTTIMVFTCLCVLQKKASGRSYHSDNSGSGGGSSGGGFSGGGGSSGGGGASGRW
>NZ_CP040390.1|WP_000036723.1|1120590_1121889_+|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP040390.1|WP_000210878.1|1118865_1120503_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP040390.1|WP_001071643.1|1117846_1118638_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVIDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP040390.1|WP_000254738.1|1117439_1117775_+|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP040390.1|WP_000581937.1|1117191_1117440_+|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP040390.1|WP_001551562.1|1114879_1117114_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKISGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP040390.1|WP_001551563.1|1113530_1114832_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKALFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASEDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVAGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVACALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNDLHNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>NZ_CP040390.1|WP_000186450.1|1110717_1113474_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG
>NZ_CP040390.1|WP_000039721.1|1125461_1126940_-|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKTWAWSEDAAVMEKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKLLPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFMPVESNAKRYNAMNKGIFKELTKHTDVILKKSYEVMHGELGNADSIQSWSNA
>NZ_CP040390.1|WP_001551560.1|1126966_1128244_-|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPIAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGYWQDTLPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_CP040390.1|WP_001551559.1|1128562_1129348_+|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVNILINNAGICKLNKVLNFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>NZ_CP040390.1|WP_000059301.1|1129417_1130872_+|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWTLLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP040390.1|WP_001098106.1|1130965_1132303_+|MFS-transporter
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISESPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVATATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLAAVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP040390.1|WP_001521167.1|1132280_1133060_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGNSGPDVSLLRSLLGADEQAAAALLLAQRKNGTSMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQYQNPLELIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFITLEQRTENGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAVGKAAIIRKTVAAESPAMQCLQLARAEQQRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NZ_CP040390.1|WP_001521165.1|1133056_1133917_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAATASWQAAQDFSGCTLAHWKIEPQPAVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGADKNATLPSGMQQLNIVPGALPDWLVSIENLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHAECQ
>NZ_CP040390.1|WP_106106683.1|1134016_1135365_-|IS3-family-transposase
MKHSFEVKLAAVNHYLAGHAGIISTAKLFQLSHTSLSHWINLFLLHGPRALDCRHKRSYSPEDKLCVVLYALGHSESLPRVAARFNIPSHNTVKNWIKGYRKSGNEAFIRRRKEKSMTRSDDTHENEANMTPEEMKNELRYLRAENAYLKAMQEHLLEKKPPGAGEKTKVIRSLRCGHCQSDLLKAAGLARSTLYYQLSLQKAKDKYADVKQLIASIFHEHRGCYGYRRIHCELQKRGLKFSGKTVRKLMQQLGLKSPVRLKKYRSYRGNMGLAAENILQRQFKAEAPCEKWVTDITEFRAGGQKLYLSPILDLFNGEIVAWETACRPTEELVKRMLNKGLESLAEGEKPLLHSDQGWHYRIKSYQSDLADKGLVQSMSRKGNCLDNAVMENFFGHLKEEIYYRRDYRNVEELENAVNEYITYWNQKRIKLSLGGLSPVEYRTEHQKAG
>NZ_CP040390.1|WP_001130266.1|1135499_1136075_-|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP040390.1|WP_000109536.1|1136091_1136352_-|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTVQRLINACPAGLFSLTPEGDLRVDYRGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG

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Crispr_ID: NZ_CP040390_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040390_2

1179902-1180418

Unclear

I-E

Consensus_repeat	Method
GTGTTCCCCGCGTCAGCGGGGATAAACCG	PILER-CR
CGGTTTATCCCCGCTGACGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGNCGCGGGGAACAC	CRT

8 spacers

cas2

The CRISPR arrays of NZ_CP040390_2

>merge|NZ_CP040390|2|1179902-1180418|PILER-CR,CRISPRCasFinder,CRT
CGGTTTATCCCCGCTGACGCGGGGAACACGGCTTTAACCACACGAGCAAGTCCTTCGCTGGCGGTTTATCCCCGCTGGCGCGGGGAACACAGTTAACAACCCGCGCCGAACAAGCCCGACAACGGTTTATCCCCGCTGGCGCGGGGAACACTCGCACCGCGTTAATCCGGCAGAAAAACAACACGGTTTATCCCCGCTGGCGCGGGGAACACTTCGCCGCCATCATCCTGTGGTGCCAGTTGACCGGTTTATCCCCGCTGACGCGGGGAACACGCGCCTCGGTTGTTTAGCCATGCTCAGCCCCACGGTTTATCCCCGCTGACGCGGGGAACACCTTTCCACCCAGGCACTGATACTCCACATAAACGGTTTATCCCCGCTGACGCGGGGAACACGATCGCCGGGCGCGGTTACCCGCTGCGAAAATCGGTTTATCCCCGCTGACGCGGGGAACACCTCACGCGAGGCATCGATCGTGATCTGATTGTCGGTTTATCCCCGCTGACGCGGGGAACAC

>NZ_CP040390|2|2|1179902-1180418|PILER-CR
CGGTTTATCCCCGCTGACGCGGGGAACAC	GGCTTTAACCACACGAGCAAGTCCTTCGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTTAACAACCCGCGCCGAACAAGCCCGACAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGCACCGCGTTAATCCGGCAGAAAAACAACA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCGCCGCCATCATCCTGTGGTGCCAGTTGAC
CGGTTTATCCCCGCTGACGCGGGGAACAC	GCGCCTCGGTTGTTTAGCCATGCTCAGCCCCA
CGGTTTATCCCCGCTGACGCGGGGAACAC	CTTTCCACCCAGGCACTGATACTCCACATAAA
CGGTTTATCCCCGCTGACGCGGGGAACAC	GATCGCCGGGCGCGGTTACCCGCTGCGAAAAT
CGGTTTATCCCCGCTGACGCGGGGAACAC	CTCACGCGAGGCATCGATCGTGATCTGATTGT
CGGTTTATCCCCGCTGACGCGGGGAACAC

>NZ_CP040390|2|2|1179902-1180418|CRISPRCasFinder
CGGTTTATCCCCGCTGACGCGGGGAACAC	GGCTTTAACCACACGAGCAAGTCCTTCGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTTAACAACCCGCGCCGAACAAGCCCGACAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGCACCGCGTTAATCCGGCAGAAAAACAACA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCGCCGCCATCATCCTGTGGTGCCAGTTGAC
CGGTTTATCCCCGCTGACGCGGGGAACAC	GCGCCTCGGTTGTTTAGCCATGCTCAGCCCCA
CGGTTTATCCCCGCTGACGCGGGGAACAC	CTTTCCACCCAGGCACTGATACTCCACATAAA
CGGTTTATCCCCGCTGACGCGGGGAACAC	GATCGCCGGGCGCGGTTACCCGCTGCGAAAAT
CGGTTTATCCCCGCTGACGCGGGGAACAC	CTCACGCGAGGCATCGATCGTGATCTGATTGT
CGGTTTATCCCCGCTGACGCGGGGAACAC

>NZ_CP040390|2|2|1179902-1180418|CRT
CGGTTTATCCCCGCTGACGCGGGGAACAC	GGCTTTAACCACACGAGCAAGTCCTTCGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTTAACAACCCGCGCCGAACAAGCCCGACAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGCACCGCGTTAATCCGGCAGAAAAACAACA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCGCCGCCATCATCCTGTGGTGCCAGTTGAC
CGGTTTATCCCCGCTGACGCGGGGAACAC	GCGCCTCGGTTGTTTAGCCATGCTCAGCCCCA
CGGTTTATCCCCGCTGACGCGGGGAACAC	CTTTCCACCCAGGCACTGATACTCCACATAAA
CGGTTTATCCCCGCTGACGCGGGGAACAC	GATCGCCGGGCGCGGTTACCCGCTGCGAAAAT
CGGTTTATCCCCGCTGACGCGGGGAACAC	CTCACGCGAGGCATCGATCGTGATCTGATTGT
CGGTTTATCCCCGCTGACGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040390.1\|WP_000517476.1\|1174710_1175022_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP040390.1\|WP_000246131.1\|1173981_1174692_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP040390.1\|WP_001067858.1\|1180930_1181635_+\|IS6-like-element-IS26-family-transposase	unknown	unknown	gnl\|CDD\|225853
NZ_CP040390.1\|WP_001173673.1\|1175588_1176194_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP040390.1\|WP_001295182.1\|1171714_1172476_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP040390.1\|WP_000219391.1\|1188183_1189089_+\|Mph(A)-family-macrolide-2'-phosphotransferase	unknown	unknown	gnl\|CDD\|270701
NZ_CP040390.1\|WP_000557454.1\|1183803_1184664_+\|aminoglycoside-N-acetyltransferase-AAC(3)-IId	unknown	unknown	gnl\|CDD\|376807
NZ_CP040390.1\|WP_000568924.1\|1172456_1173506_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP040390.1\|WP_000063172.1\|1180514_1180808_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP040390.1\|WP_060579135.1\|1186193_1187321_+\|DUF3883-domain-containing-protein	unknown	unknown	gnl\|CDD\|379021
NZ_CP040390.1\|WP_000372108.1\|1177622_1178531_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP040390.1\|WP_001551550.1\|1176193_1177621_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP040390.1\|WP_001551551.1\|1178782_1179820_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP040390.1\|WP_001551549.1\|1175215_1175539_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP040390.1\|WP_012477590.1\|1181668_1182589_-\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP040390.1\|WP_001330846.1\|1185897_1186143_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040390.1\|WP_000951934.1\|1185700_1185892_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040390.1\|WP_001219242.1\|1173502_1173982_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP040390.1\|WP_001067855.1\|1187357_1188062_+\|IS6-like-element-IS26-family-transposase	unknown	unknown	gnl\|CDD\|225853
NZ_CP040390.1\|WP_000587837.1\|1184676_1185219_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379082

Protein	Function_ID	Function_description	E-value
NZ_CP040390.1\|WP_000517476.1\|1174710_1175022_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP040390.1\|WP_000246131.1\|1173981_1174692_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.32778e-121
NZ_CP040390.1\|WP_001067858.1\|1180930_1181635_+\|IS6-like-element-IS26-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.07441e-69
NZ_CP040390.1\|WP_001173673.1\|1175588_1176194_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP040390.1\|WP_001295182.1\|1171714_1172476_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP040390.1\|WP_000219391.1\|1188183_1189089_+\|Mph(A)-family-macrolide-2'-phosphotransferase	gnl\|CDD\|270701	cd05152, MPH2', Macrolide 2'-Phosphotransferase. MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported as a mechanism for bacterial resistance in clinical samples. MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	9.13554e-123
NZ_CP040390.1\|WP_000557454.1\|1183803_1184664_+\|aminoglycoside-N-acetyltransferase-AAC(3)-IId	gnl\|CDD\|376807	pfam02522, Antibiotic_NAT, Aminoglycoside 3-N-acetyltransferase. This family consists of bacterial aminoglycoside 3-N-acetyltransferases EC:2.3.1.81, these catalyze the reaction: Acetyl-Co + a 2-deoxystreptamine antibiotic <=> CoA + N3'-acetyl-2-deoxystreptamine antibiotic. The enzyme can use a range of antibiotics with 2-deoxystreptamine rings as acceptor for its acetyltransferase activity, this inactivates and confers resistance to gentamicin, kanamycin, tobramycin, neomycin and apramycin amongst others.	2.07265e-76
NZ_CP040390.1\|WP_000568924.1\|1172456_1173506_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP040390.1\|WP_000063172.1\|1180514_1180808_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.07297e-64
NZ_CP040390.1\|WP_060579135.1\|1186193_1187321_+\|DUF3883-domain-containing-protein	gnl\|CDD\|379021	pfam13020, DUF3883, Domain of unknown function (DUF3883). This is a domain is uncharacterized. It is found on restriction endonucleases.	1.07854e-25
NZ_CP040390.1\|WP_000372108.1\|1177622_1178531_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP040390.1\|WP_001551550.1\|1176193_1177621_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP040390.1\|WP_001551551.1\|1178782_1179820_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP040390.1\|WP_001551549.1\|1175215_1175539_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.41878e-52
NZ_CP040390.1\|WP_012477590.1\|1181668_1182589_-\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	2.53757e-08
NZ_CP040390.1\|WP_001219242.1\|1173502_1173982_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP040390.1\|WP_001067855.1\|1187357_1188062_+\|IS6-like-element-IS26-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.30323e-69
NZ_CP040390.1\|WP_000587837.1\|1184676_1185219_+\|AAA-family-ATPase	gnl\|CDD\|379082	pfam13238, AAA_18, AAA domain.	0.000252877

>NZ_CP040390.1|WP_001551551.1|1178782_1179820_+|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEVFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGTSWHDVRLDNQQHIDKALPGRIERRCRDVIRIMLPLVKELAKAS
>NZ_CP040390.1|WP_000372108.1|1177622_1178531_-|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP040390.1|WP_001551550.1|1176193_1177621_-|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVGYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADESLPAVQSASVDVVWMAEQPLSPGQRYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATTAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP040390.1|WP_001173673.1|1175588_1176194_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP040390.1|WP_001551549.1|1175215_1175539_-|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVIGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP040390.1|WP_000517476.1|1174710_1175022_-|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP040390.1|WP_000246131.1|1173981_1174692_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKHVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP040390.1|WP_001219242.1|1173502_1173982_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP040390.1|WP_000568924.1|1172456_1173506_-|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP040390.1|WP_001295182.1|1171714_1172476_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW
>NZ_CP040390.1|WP_000063172.1|1180514_1180808_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQISQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGVRLVSFLPVDNQ
>NZ_CP040390.1|WP_001067858.1|1180930_1181635_+|IS6-like-element-IS26-family-transposase
MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIINATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
>NZ_CP040390.1|WP_012477590.1|1181668_1182589_-|IS4-family-transposase
MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTELGRNLPTKARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSDIREQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASILPSNTTPLIVSDAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPISNLHDMSSSHSKTLGYKRLTKSNPISCQILLYKSRSKGRKNQRSTRTHCHHPSPKIYSASAKEPWVLATNLPVEIRTPKQLVNIYSKRMQIEETFRDLKSPALLQS
>NZ_CP040390.1|WP_000557454.1|1183803_1184664_+|aminoglycoside-N-acetyltransferase-AAC(3)-IId
MHTRKAITEALQKLGVQTGDLLMVHASLKAIGPVEGGAETVVAALRSAVGPTGTVMGYASWDRSPYEETLNGARLDDEARRTWLPFDPATAGTYRGFGLLNQFLVQAPGARRSAHPDASMVAVGPLAETLTEPHELGHALGEGSPVERFVRLGGKALLLGAPLNSVTALHYAEAVADIPNKRWVTYEMPMLGRDGEVAWKTASDYDSNGILDCFAIEGKPDAVETIANAYVKLGRHREGVVGFAQCYLFDAQDIVTFGVTYLEKHFGTTPIVPPHEAVERSCEPSG
>NZ_CP040390.1|WP_000587837.1|1184676_1185219_+|AAA-family-ATPase
MIIWINGPFGAGKTTLAKRLRDRRSKSLIFDPEEIGFVVKETVPMPASGDYQDLPLWRGLTIAAVREIRRNYSQDIIIPMTLVHPDYLTEILDGVRRIDDQLLHIFLTLNEDLLRHRIANQTMHPDPNRNAEIREWRLANVARCLAARERLPCTTRVLDSGAHTSDELAAMVLDGIDGRT
>NZ_CP040390.1|WP_000951934.1|1185700_1185892_-|hypothetical-protein
MAIALMGAGFSATDTSDAVNILYPITMTVQANKAWQASGLKKSFFLPSHKKVRGGEKISYARL
>NZ_CP040390.1|WP_001330846.1|1185897_1186143_+|hypothetical-protein
MQAYRAMVNSYSLSDDSGVMAAAAITHFLFGQAVFSYLNGWSVLIGPGTGLDSTGCKYARDLMGLVAFTAFIVTFLFRGYS
>NZ_CP040390.1|WP_060579135.1|1186193_1187321_+|DUF3883-domain-containing-protein
MSQLSQLRSPAAVQAAIDEFVQLGRTKFLARHGYGKSRDFLVRDPKTGTDCDSKAIAGVAFGKQFPEQGPLTADSFSGGEATVVPALTRLGFRIIRIGEDWSEEEVLATVEDYFDMLRAEAAGEPYNKSEHNQALRQLLNGRSKSSVELKHQNISAVLDALGLPYINGYKPRGNSQLLLRKSVHAYVLEHQQTVGALVDALEEVKLPGDKTYRAALVEPHAREVLVRTPASLRQRLPRKFDYAARDEANRKLGRAGEQWVIGYEQQRLTELGHPELFQRLDWVSDTQGDGAGFDILSFEEDAHERFIEVKTTNGGVGSSFLVSHNELEFSKEAGDQFHLYRVFQFRDGPRLFTLPGDLSQHVHLKPTGTVANSRW
>NZ_CP040390.1|WP_001067855.1|1187357_1188062_+|IS6-like-element-IS26-family-transposase
MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
>NZ_CP040390.1|WP_000219391.1|1188183_1189089_+|Mph(A)-family-macrolide-2'-phosphotransferase
MTVVTTADTSQLYALAARHGLKLHGPLTVNELGLDYRIVIATVDDGRRWVLRIPRRAEVSAKVEPEARVLAMLKNRLPFAVPDWRVANAELVAYPMLEDSTAMVIQPGSSTPDWVVPQDSEVFAESFATALAALHAVPISAAVDAGMLIRTPTQARQKVADDVDRVRREFVVNDKRLHRWQRWLDDDSSWPDFSVVVHGDLYVGHVLIDNTERVSGMIDWSEARVDDPAIDMAAHLMVFGEEGLAKLLLTYEAAGGRVWPRLAHHIAERLAFGAVTYALFALDSGNEEYLAAAKAQLAAAE

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Crispr_ID: NZ_CP040390_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040390_3

1609448-1609536

Orphan

Consensus_repeat	Method
GGTTGTCCAACGGTTGTCCAACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040390_3

>merge|NZ_CP040390|3|1609448-1609536|CRISPRCasFinder
AATTGTCCAACGGTTGTCCAACGGTTGTCCAACGCAAACCCCAGTAATGGCGCGGCTCTCAGCGGAGATTGTCCAACGGTTGTCCAACG

>NZ_CP040390|3|3|1609448-1609536|CRISPRCasFinder
AATTGTCCAACGGTTGTCCAACG	GTTGTCCAACGCAAACCCCAGTAATGGCGCGGCTCTCAGCGGA
GATTGTCCAACGGTTGTCCAACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040390.1\|WP_001519589.1\|1607483_1608179_-\|LexA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224885
NZ_CP040390.1\|WP_025748956.1\|1612697_1613051_+\|DUF2591-domain-containing-protein	unknown	unknown	gnl\|CDD\|378491
NZ_CP040390.1\|WP_072201588.1\|1606760_1607138_-\|antitermination-protein	unknown	unknown	gnl\|CDD\|288317
NZ_CP040390.1\|WP_000006226.1\|1613711_1614074_+\|RusA-family-crossover-junction-endodeoxyribonuclease	unknown	unknown	gnl\|CDD\|182075
NZ_CP040390.1\|WP_060579119.1\|1603575_1604487_-\|DNA-recombinase	unknown	unknown	gnl\|CDD\|367688
NZ_CP040390.1\|WP_001243355.1\|1604876_1605029_-\|host-cell-division-inhibitory-peptide-Kil	unknown	unknown	gnl\|CDD\|310716
NZ_CP040390.1\|WP_000604111.1\|1604483_1604792_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040390.1\|WP_000067728.1\|1608254_1608470_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NZ_CP040390.1\|WP_000638547.1\|1605013_1605145_-\|protease-FtsH-inhibitory-lysogeny-factor-CIII	unknown	unknown	gnl\|CDD\|280268
NZ_CP040390.1\|WP_029701292.1\|1609943_1611380_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274672
NZ_CP040390.1\|WP_029701287.1\|1611770_1612109_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040390.1\|WP_000251073.1\|1608589_1608883_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|336083
NZ_CP040390.1\|WP_000950943.1\|1613050_1613227_+\|protein-ninF	unknown	unknown	gnl\|CDD\|283468
NZ_CP040390.1\|WP_029701290.1\|1611455_1611662_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040390.1\|WP_001254255.1\|1612518_1612695_+\|NinE-family-protein	unknown	unknown	gnl\|CDD\|283078
NZ_CP040390.1\|WP_025748957.1\|1613424_1613715_+\|DUF1364-domain-containing-protein	unknown	unknown	gnl\|CDD\|377777
NZ_CP040390.1\|WP_060579118.1\|1605169_1606138_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173412
NZ_CP040390.1\|WP_001286917.1\|1613219_1613432_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040390.1\|WP_000167595.1\|1606281_1606752_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040390.1\|WP_029701286.1\|1612111_1612522_+\|recombination-protein-NinB	unknown	unknown	gnl\|CDD\|368607

Protein	Function_ID	Function_description	E-value
NZ_CP040390.1\|WP_001519589.1\|1607483_1608179_-\|LexA-family-transcriptional-regulator	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	2.66596e-59
NZ_CP040390.1\|WP_025748956.1\|1612697_1613051_+\|DUF2591-domain-containing-protein	gnl\|CDD\|378491	pfam10765, DUF2591, Protein of unknown function (DUF2591). This bacterial family of proteins has no known function.	1.41125e-24
NZ_CP040390.1\|WP_072201588.1\|1606760_1607138_-\|antitermination-protein	gnl\|CDD\|288317	pfam11438, N36, 36-mer N-terminal peptide of the N protein (N36). The arginine-rich motif of the N protein is involved in transcriptional antitermination of phage lambda. N36 forms a complex with boxB RNA by binding tightly to the major groove of the boxB hairpin via hydrophobic and electrostatic interactions forming a bent alpha helix.	3.4436e-11
NZ_CP040390.1\|WP_000006226.1\|1613711_1614074_+\|RusA-family-crossover-junction-endodeoxyribonuclease	gnl\|CDD\|182075	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed.	1.59268e-40
NZ_CP040390.1\|WP_060579119.1\|1603575_1604487_-\|DNA-recombinase	gnl\|CDD\|367688	pfam03837, RecT, RecT family. The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to RecT.	5.758e-27
NZ_CP040390.1\|WP_001243355.1\|1604876_1605029_-\|host-cell-division-inhibitory-peptide-Kil	gnl\|CDD\|310716	pfam06301, Lambda_Kil, Bacteriophage lambda Kil protein. This family consists of several Bacteriophage lambda Kil protein like sequences from both phages and bacteria. Induction of a lambda prophage causes the death of the host cell even in the absence of phage replication and lytic functions due to expression of the lambda kil gene.	2.78295e-13
NZ_CP040390.1\|WP_000067728.1\|1608254_1608470_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	3.14902e-14
NZ_CP040390.1\|WP_000638547.1\|1605013_1605145_-\|protease-FtsH-inhibitory-lysogeny-factor-CIII	gnl\|CDD\|280268	pfam02061, Lambda_CIII, Lambda Phage CIII. The CIII protein from bacteriophage lambda is an inhibitor of the FtsH peptidase.	2.1015e-09
NZ_CP040390.1\|WP_029701292.1\|1609943_1611380_+\|AAA-family-ATPase	gnl\|CDD\|274672	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. [Mobile and extrachromosomal element functions, Prophage functions].	0
NZ_CP040390.1\|WP_000251073.1\|1608589_1608883_+\|hypothetical-protein	gnl\|CDD\|336083	pfam05269, Phage_CII, Bacteriophage CII protein. This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.	3.87738e-44
NZ_CP040390.1\|WP_000950943.1\|1613050_1613227_+\|protein-ninF	gnl\|CDD\|283468	pfam05810, NinF, NinF protein. This family consists of several bacteriophage NinF proteins as well as related sequences from E. coli.	4.95862e-20
NZ_CP040390.1\|WP_001254255.1\|1612518_1612695_+\|NinE-family-protein	gnl\|CDD\|283078	pfam05322, NinE, NINE Protein. This family consists of NINE proteins from several bacteriophages and from E. coli.	2.29903e-23
NZ_CP040390.1\|WP_025748957.1\|1613424_1613715_+\|DUF1364-domain-containing-protein	gnl\|CDD\|377777	pfam07102, DUF1364, Protein of unknown function (DUF1364). This family consists of several bacterial and phage proteins of around 95 residues in length. The function of this family is unknown.	2.67212e-48
NZ_CP040390.1\|WP_060579118.1\|1605169_1606138_-\|hypothetical-protein	gnl\|CDD\|173412	PTZ00121, PTZ00121, MAEBL; Provisional.	3.16593e-09
NZ_CP040390.1\|WP_029701286.1\|1612111_1612522_+\|recombination-protein-NinB	gnl\|CDD\|368607	pfam05772, NinB, NinB protein. The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.	7.58943e-62

>NZ_CP040390.1|WP_000251073.1|1608589_1608883_+|hypothetical-protein
MVRANKRNEALRIESALLNKIAMLGTEKTAEAVGVDKSQISRWKRDWIPKFSMLLAVLEWGVVDDDMARLARQVASILTNKKRPAATERSEQIQMEF
>NZ_CP040390.1|WP_000067728.1|1608254_1608470_+|helix-turn-helix-transcriptional-regulator
MSNLRKYRESLNISQTTLAKAVGCTQGAIGHWESGRRFPDLKTCRALVECLNKLGAKVSLDDVFPPEHKAA
>NZ_CP040390.1|WP_001519589.1|1607483_1608179_-|LexA-family-transcriptional-regulator
MDGFSTERNNKGMKMKWYELARSRMKELGITQEKLAEELGMTQGGIGHWLRGSRHPSLDEIGVVFKYLGIDNVSFNHDGTFSPVGEYSSAPVKKQYEYPVFSHVQAGMFSPELRTFTKGDAERWVSTTKKASDCAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSGQVFLQPLNPQYPMIPCNDSCSVVGKVIASQWPEETFS
>NZ_CP040390.1|WP_072201588.1|1606760_1607138_-|antitermination-protein
MGLPPTTPPKLTDRRIQMDAQTRRRERRADKQAQWKAANPLLVGVSAKPVNRPILSLNRKPKSRVESALNPIDLTVLAEYHEQIESNLQRIERKNQRTWYSKPRSEMGVTCVGRQKMKLGSKPLI
>NZ_CP040390.1|WP_000167595.1|1606281_1606752_-|hypothetical-protein
MTKSWSVPFPESETEHDGMPVFWRFQATVEEDGIKIFALQYIAFHQTEHYAWLVPAHWIVNFKPAPNQWLQEWKQRRNRYAIKKVAKNAERSFAFPTKKLAIESLLRRKKYHLMRIKQDLAVVSTLVDGMKNIDTSTPDIEYNFGHNQETENWVFY
>NZ_CP040390.1|WP_060579118.1|1605169_1606138_-|hypothetical-protein
MSEVTDLVVIEKANAMTVFQSADQIEEILQKVEREVMSFVPDITTAKGRKEIASLAYKVAQTKTYLDGLGKDLVAELKEIPKLIDANRKTVRDRLDELKAKARQPLTDYEEEQARIKAEEEAKAAAEALAKQIESDHEIAILMDREFDRQREEARLKAEQEKREHEERLKREAEEKARAEAEAKAKAEIEAAARREAEAKAAAERAERERIEAEQRAQREAKEAAERAEREKQAAIEAERRKAQEEAERIRREAEAKEQARIAEEKRIKEEEECRAKDKAHRKEVNNKILADLIKVGASEDVANNIITAIVKGEVFATKITY
>NZ_CP040390.1|WP_000638547.1|1605013_1605145_-|protease-FtsH-inhibitory-lysogeny-factor-CIII
MIYAIAGGARMGAFQLNESLLERITRKLRDGWKRVEVLLCAMK
>NZ_CP040390.1|WP_001243355.1|1604876_1605029_-|host-cell-division-inhibitory-peptide-Kil
MRNEIAINHQMLRAAQNKAVIARFIGDSKMWLEANKAMKSAINLPWYRRK
>NZ_CP040390.1|WP_000604111.1|1604483_1604792_-|hypothetical-protein
MILTLNDKREISQIIASFTDEDYERINSEVDRLCKRCDPISEMLRSYKPDEHTKDAIDWLEDDDCNYQEKAAEWFWDAITERVKAEYAFAIFKRRHIYGEAA
>NZ_CP040390.1|WP_060579119.1|1603575_1604487_-|DNA-recombinase
MSNIVEFVKQQEQLFCGALTEQTVTWAKESQFAIQYFQKNDYLAKTALANPTSAQNAIINVAAIGITLNPASKLAYLVPRDGMVCLDISYMGLLHIAMESGVISWGQAKLVHANDTYESNGLDKAPTHKYNAFGDRGDIVGVYCTVKTPAGDYLTEEMSLAEIEAVRKTSKAAFSDKGPWVNHWNEMARKTVVKRASKFWPKASRLDSAVHVLNEEEGVWTEPVMPHKSEEDIREDERKRQQEITDKAQLLCDEMAQAENMDDLKRYFAEAYRLTSGMKLQQNVQAIYAECKAKLEVASEQTI
>NZ_CP040390.1|WP_029701292.1|1609943_1611380_+|AAA-family-ATPase
MTDNFYAPPHSIEAEQAVIGGLLLDDDSSERVQKVLAMLKPDSFYSRPHKILFEEITRMHREQKPVDGLTLFDELERKSLTVSVGGFAYIAEIAKNTPSAANIVSYAMQVRETAMERYAINRMTEATELLYSRNGMTATQKYEAIQSIFTQLTDHAKTGSRRGLRSFGEVMEDWVSDLEKRFDPSGEQRGMSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALMFSLEMPGDQILEKLVGQKSGVNPNIFYLPATNDADDGYQGDYDGDFNRAIETANRLSEIDLLYIDDTPGLSLAQIVSESRRIKREKGCVGMILVDYLTLMTAEKADRNDLAYGMITKGLKNLAKELDCVVVLLTQLNRALESRTNKRPLPSDSRDTGQIEQDCDYWVGIHREVAFDDSVPPGETELILRLNRHGNTGTVYCIQANGAIYDTDQQSAEMRRREREEPQSKKKGGF
>NZ_CP040390.1|WP_029701290.1|1611455_1611662_+|hypothetical-protein
MAEFMLVAFKCVGVGWILLTFFIVLHSYIRLVNDGKDPWYTLFGAAFVWVIIGVMPVAVAKMAWRFVS
>NZ_CP040390.1|WP_029701287.1|1611770_1612109_+|hypothetical-protein
MKDDESRCQFEESWLRRGGESSDLIRYPENHHEIGSGDISGQYVMDDVQGHWQTWQASRAAIELDIDWPESNDDFWKDGEEGAYAMGHEDGKDKTVIAVMKAIRAAGVKVKE
>NZ_CP040390.1|WP_029701286.1|1612111_1612522_+|recombination-protein-NinB
MKQTIFLRSKQQQQAAINAILETPLDKDKPVTIRITDYKRNLDQNAKFHAMLADIARQVQWCGKWLKPEQWKVLLISGHAVATKQEADVLPGLEGEYVNIRESSAQMSVKRMASLIEYTTAWAIGQGVRFTDRRYE
>NZ_CP040390.1|WP_001254255.1|1612518_1612695_+|NinE-family-protein
MRRQRRSITDIICENCKYLPTKRSRNKRKPIPKESDVKTFNYTAHLWDIRWLRHRARK
>NZ_CP040390.1|WP_025748956.1|1612697_1613051_+|DUF2591-domain-containing-protein
MDYSQLSDFEINKRVAICCGFAPEDCEIAKLGTSIVGVEWDDETGYAIKTVDYCKSPSDAEPIIVENRIGIIPAPENGLWKAAHRKVGSDSTPYHMTQDENPLRAAMIVFLMMQRIQ
>NZ_CP040390.1|WP_000950943.1|1613050_1613227_+|protein-ninF
MLSPSQSIQYQKESVERALTCANCGQKLHVLEVHVCEHCCAELMSDPNSSMYEEEDDE
>NZ_CP040390.1|WP_001286917.1|1613219_1613432_+|hypothetical-protein
MSDYLKWYLCHRWLIKFAVKDWMTADANKLKQRKDYYYARMKENYCSIRTRIFIKKDLQSILQLRGKVNG
>NZ_CP040390.1|WP_025748957.1|1613424_1613715_+|DUF1364-domain-containing-protein
MANLRKEACGRECQVRIYGVCNGNPETTVLAHYRMAGICGTGMKPDDLIGAWACSACHDEIDRRTHNLDNKDARLYHLEGVIRTQSILLKEGKIKS
>NZ_CP040390.1|WP_000006226.1|1613711_1614074_+|RusA-family-crossover-junction-endodeoxyribonuclease
MSEYQFVLPYPPSVNTYWRRRGSQYYISDKGQKYRKDVQQIIRQLKLDIFTKSRLRIKVIADVPDSRRRDLDNILKGLLDSLIHAGFAEDDEQFDDIRVIRGVKVPGGRLGIKITELENV

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Crispr_ID: NZ_CP040390_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040390_4

3634073-3634214

Orphan

Consensus_repeat	Method
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040390_4

>merge|NZ_CP040390|4|3634073-3634214|CRISPRCasFinder
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAGAAATCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAAACAGCGCCGGATGCGGCGTGAATGCCTTATCCGGCCTACAAAAGAAATGCAG

>NZ_CP040390|4|4|3634073-3634214|CRISPRCasFinder
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	AAATCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAAACAGC
GCCGGATGCGGCGTGAATGCCTTATCCGGCCTACAAAAGAAATGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040390.1\|WP_071526520.1\|3640636_3640828_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040390.1\|WP_001550817.1\|3623536_3624598_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|366088
NZ_CP040390.1\|WP_001550823.1\|3642755_3644408_-\|class-I-fumarate-hydratase	unknown	unknown	gnl\|CDD\|185290
NZ_CP040390.1\|WP_000724204.1\|3644515_3645796_-\|dicarboxylate/amino-acid:cation-symporter	unknown	unknown	gnl\|CDD\|224220
NZ_CP040390.1\|WP_001316209.1\|3640787_3640934_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225533
NZ_CP040390.1\|WP_001550818.1\|3624594_3625326_-\|molecular-chaperone	unknown	unknown	gnl\|CDD\|225663
NZ_CP040390.1\|WP_000099850.1\|3637192_3638410_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	unknown	unknown	gnl\|CDD\|235571
NZ_CP040390.1\|WP_001513234.1\|3630295_3630403_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040390.1\|WP_001550821.1\|3639669_3640539_+\|succinate--CoA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|180194
NZ_CP040390.1\|WP_001308496.1\|3630798_3631188_+\|succinate-dehydrogenase-cytochrome-b556-subunit	unknown	unknown	gnl\|CDD\|181900
NZ_CP040390.1\|WP_001181473.1\|3634376_3637178_+\|2-oxoglutarate-dehydrogenase-E1-component	unknown	unknown	gnl\|CDD\|236499
NZ_CP040390.1\|WP_000785834.1\|3628806_3630090_-\|citrate-(Si)-synthase	unknown	unknown	gnl\|CDD\|180164
NZ_CP040390.1\|WP_000254365.1\|3631181_3631529_+\|succinate-dehydrogenase-membrane-anchor-subunit	unknown	unknown	gnl\|CDD\|181901
NZ_CP040390.1\|WP_001235263.1\|3633310_3634027_+\|succinate-dehydrogenase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|235652
NZ_CP040390.1\|WP_000472419.1\|3627850_3628417_-\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP040390.1\|WP_000388207.1\|3642143_3642746_-\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	unknown	unknown	gnl\|CDD\|235662
NZ_CP040390.1\|WP_001550822.1\|3641204_3642110_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NZ_CP040390.1\|WP_020628708.1\|3625340_3627791_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729
NZ_CP040390.1\|WP_001550820.1\|3631528_3633295_+\|succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|181594
NZ_CP040390.1\|WP_001048602.1\|3638503_3639670_+\|ADP-forming-succinate--CoA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234813

Protein	Function_ID	Function_description	E-value
NZ_CP040390.1\|WP_001550823.1\|3642755_3644408_-\|class-I-fumarate-hydratase	gnl\|CDD\|185290	PRK15392, PRK15392, class I fumarate hydratase.	0
NZ_CP040390.1\|WP_001550817.1\|3623536_3624598_-\|fimbrial-protein	gnl\|CDD\|366088	pfam00419, Fimbrial, Fimbrial protein.	0.000407711
NZ_CP040390.1\|WP_000724204.1\|3644515_3645796_-\|dicarboxylate/amino-acid:cation-symporter	gnl\|CDD\|224220	COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and conversion].	9.71609e-118
NZ_CP040390.1\|WP_001316209.1\|3640787_3640934_+\|hypothetical-protein	gnl\|CDD\|225533	COG2986, HutH, Histidine ammonia-lyase [Amino acid transport and metabolism].	4.49849e-08
NZ_CP040390.1\|WP_001550818.1\|3624594_3625326_-\|molecular-chaperone	gnl\|CDD\|225663	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion].	3.60137e-72
NZ_CP040390.1\|WP_000099850.1\|3637192_3638410_+\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	0
NZ_CP040390.1\|WP_001550820.1\|3631528_3633295_+\|succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|181594	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0
NZ_CP040390.1\|WP_001550821.1\|3639669_3640539_+\|succinate--CoA-ligase-subunit-alpha	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	0
NZ_CP040390.1\|WP_001308496.1\|3630798_3631188_+\|succinate-dehydrogenase-cytochrome-b556-subunit	gnl\|CDD\|181900	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit.	5.48862e-83
NZ_CP040390.1\|WP_001181473.1\|3634376_3637178_+\|2-oxoglutarate-dehydrogenase-E1-component	gnl\|CDD\|236499	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed.	0
NZ_CP040390.1\|WP_000785834.1\|3628806_3630090_-\|citrate-(Si)-synthase	gnl\|CDD\|180164	PRK05614, gltA, citrate synthase.	0
NZ_CP040390.1\|WP_000254365.1\|3631181_3631529_+\|succinate-dehydrogenase-membrane-anchor-subunit	gnl\|CDD\|181901	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit.	5.54037e-58
NZ_CP040390.1\|WP_001235263.1\|3633310_3634027_+\|succinate-dehydrogenase-iron-sulfur-subunit	gnl\|CDD\|235652	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	3.48257e-167
NZ_CP040390.1\|WP_000472419.1\|3627850_3628417_-\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	2.40726e-36
NZ_CP040390.1\|WP_000388207.1\|3642143_3642746_-\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	gnl\|CDD\|235662	PRK05986, PRK05986, cob(I)yrinic acid a,c-diamide adenosyltransferase.	2.05403e-116
NZ_CP040390.1\|WP_001550822.1\|3641204_3642110_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	3.89241e-62
NZ_CP040390.1\|WP_020628708.1\|3625340_3627791_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP040390.1\|WP_001048602.1\|3638503_3639670_+\|ADP-forming-succinate--CoA-ligase-subunit-beta	gnl\|CDD\|234813	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta.	0

>NZ_CP040390.1|WP_001235263.1|3633310_3634027_+|succinate-dehydrogenase-iron-sulfur-subunit
MRLEFSIYRYNPDVDDAPRMQDYTLEAEEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA
>NZ_CP040390.1|WP_001550820.1|3631528_3633295_+|succinate-dehydrogenase-flavoprotein-subunit
MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNADGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGALRDASESDVEASLDRLNRWNNNRNGEDPVAIRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNTQRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLYLPESESMTRRSVNMEPKLRPAFPPKIRTY
>NZ_CP040390.1|WP_000254365.1|3631181_3631529_+|succinate-dehydrogenase-membrane-anchor-subunit
MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV
>NZ_CP040390.1|WP_001308496.1|3630798_3631188_+|succinate-dehydrogenase-cytochrome-b556-subunit
MIRNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLAGVLVW
>NZ_CP040390.1|WP_001513234.1|3630295_3630403_-|hypothetical-protein
MRKSYEVGISPKINLCNSVEVLTNSFGTVISGKQV
>NZ_CP040390.1|WP_000785834.1|3628806_3630090_-|citrate-(Si)-synthase
MADTKAKLTLNGDTAVELDVLKGTLGQDVIDIRTLGSKGVFTFDPGFTSTASCESKITFIDGDEGILLHRGFPIDQLATDSNYLEVCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNNPRHREIAAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHEQNASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEISSVKHIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVAMELENIALNDPYFIEKKLYPNVDFYSGIILKAMGIPSSMFTVIFAMARTVGWIAHWSEMHSDGMKIARPRQLYTGYEKRDFKSDIKR
>NZ_CP040390.1|WP_000472419.1|3627850_3628417_-|type-1-fimbrial-protein
MFKGQKTLAALAVSLLFTAPVYAADEGSGEIHFKGEVIEAPCEIHQDDIDKEVELGQVTTSHINQSHHSDAVAVDLRLVNCDLENSNNGSGGKISKVAVTFDSSAKTTGADPILNNTSTGEATGVGVRLMNKDQSNIVLGTATPDIDLAPTSSEQTLNFFAWMEQIDQATPVTPGAVTANATYVLDYK
>NZ_CP040390.1|WP_020628708.1|3625340_3627791_-|fimbrial-biogenesis-outer-membrane-usher-protein
MNIYRLSFISCLVMAIPSALAVEFNLNVLDKSMRDRIDISLLKEKGGIAPGEYFVSVAVNNNQISNGQKIDWKKNGDQTIPCINDLLVDKFGLKPEVRQSLPRLNQCVDFSSRPEILFIFDQASQQLNITIPQAWLAWHSDNWTPPSTWKEGVAGVLMDYNLFASSYRPQDGSNSTNLNAYGTAGINAGAWRLRSDYQLNQTDSDDNHEQSGEISRTYLFRPLPQLGSKLTLGETDFSSNIFDGFSYTGAALASDDRMLPWELRGYAPQISGIAQTNATVTVSHSGRVIYQKKVLPGPFIIDDLNQSVQGTLDVKVTEEDGRVNNFQVSAASTPFLTRQGQVRYKLAAGQPRTSMSHQTENETFFSNEVSWGMLSNTSLYGGLLISGDNYHSAAMGIGQNMLWLGALSFDVTWASSQFDTQQDERGLSYRFNYSKQVDATNSTISLAAYRFSDRHFHSYANYLDHKYNDNDAQDEKQTISLSVGQPITPLNLNLYANLLHQTWWNADASTTANITAGFNVDIGNWRDISISTSFNTTHYEDKDRDNQIYLSISLPFGNGGRVGYDMQNSNHSTTHRMSWNDTLDERNSWGMSTGLQSDRPDNGAQVSGNYQHLSSAGEWDISGTYAANDYSSVSSSWSGSFTATQYGAAFHRRSSTNEPRLMVSTDGVADIPVQGNLDYTNHFGIAVVPLISSYQPSTVAVNMNDLPDGVTVADNVIKETWIEGAIGYKSLASRSGKDVNVIIRNASGQLPPLGADIRQEDSGISVGIVGEEGHAWLSGVAENQQFTVIWGDSQRCSIHLPEHMEDTANRLILPCH
>NZ_CP040390.1|WP_001550818.1|3624594_3625326_-|molecular-chaperone
MTFMKGLPLLLLVASLCSYAALQPDRTRIVFNANDKATSLRVDNRSDKLPYLAYSWLENEKGEKSDDLLVALPPIQRLEPKATTQVRIVKQASTAKLPGDRETLFFYNMREIPPAPEKNSDHAVLQVAIQSRIKVFWRPAALRKKAGEKVELQLQVSQQANQLTLKNPTAYYLTIAYLGRNEKGVLPGFKTVMVAPFSTVNTNTGSYSGRQFYLGYMDDYGALRMTTLNCSGQCRLQAVEAKK
>NZ_CP040390.1|WP_001550817.1|3623536_3624598_-|fimbrial-protein
MSAGKGVLLVICLVFLPLKSALALNCYFGSSGGSVEKSEVIQPFAVPGNAKPGDKIWESDDIKIPVYCDNNTNGNFESEHVYAWVNPYPGVQDRYYQLGVTYNGVDYDASLGKSRIDTNQCIDSKNINIYTPEQIIAMGWQNKICSGDPANIHMSRTFLARMRLYVKIREMPPHDYQSTLSDYIVVQFDGAGSVNEDPTAQNLKYHITGLENIRVLDCSVNFSISPETQVIDFGKFNLLDIRRHTMSKTFSIKTTKSQNDQCTDGFKVSSSFYTEETLVEEDKALLIGNGLKLRLLDENASPYTFNKYAEYADFTSDMLIYEKTYTAELSSIPGTPIEAGPFDTVVLFKINYN
>NZ_CP040390.1|WP_001181473.1|3634376_3637178_+|2-oxoglutarate-dehydrogenase-E1-component
MQNSALKAWLDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQFHSQTREYFRRLAKDASRYSSTISDPDTNVKQVKVLQLINAYRFRGHQHANLDPLGLWQQDKVADLDPSFHDLTEADFQETFNVGSFASGKETMKLGELLEALKQTYCGPIGAEYMHITSTEEKRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAIGEIDELDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGYMSVHQKQQQDLVNDALNVE
>NZ_CP040390.1|WP_000099850.1|3637192_3638410_+|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase
MSSVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLREGNSTGKETSAKSEEKASTPAQRQQASLEEQNNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAKAPAKESAPAAAAPAAQPALAARSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV
>NZ_CP040390.1|WP_001048602.1|3638503_3639670_+|ADP-forming-succinate--CoA-ligase-subunit-beta
MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAVEGK
>NZ_CP040390.1|WP_001550821.1|3639669_3640539_+|succinate--CoA-ligase-subunit-alpha
MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEVLKTVLK
>NZ_CP040390.1|WP_071526520.1|3640636_3640828_-|hypothetical-protein
MNIAFVDLLNATVKRWEASASGNDSKFAVVLIRGLRSVAAIHSGCGHAVKPAVRFRPWLTFKA
>NZ_CP040390.1|WP_001316209.1|3640787_3640934_+|hypothetical-protein
MTVALSKSTKAMFTAYRQVVPFVSQDRVFTPDIAASQKFLEGYAINQK
>NZ_CP040390.1|WP_001550822.1|3641204_3642110_+|LysR-family-transcriptional-regulator
MRGKIPKTELLVTFEVVARHESYTRAAEELALTQSAVFRQVSALEEFLHTPLFSHSKKRIFLNDAGKYYLGIVKETLNKLERDTNTIMTWQPTVKVIELAVNPTFSTHWLIPNLHEFTKLHPDIIVNIHSLANNGDFLNREYDAVIMRENFCAPWAEVEYLFDEEILPVCSGSLLAMSDQKLSVAELLTELPLLHQSTRITGWEEWFALSGVSSPLVNNGPRFDLLSMLIAAVRSNLGVALLPRFAIQHDLDSGDMVIPCDVPIRTGNRFIMTWQEEKSDSPHLQQFREWLLAKSVVPQAM
>NZ_CP040390.1|WP_000388207.1|3642143_3642746_-|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase
MEARISTERHVQRQQKLKEQVDTRVAAAIEKKGILIVFTGNGKGKSTAAFGTVTRAVGHGKTVGVAQYIKGQWDNGEYNLLQPLGVEFHIMGTGFTWETQNRQADIDAAKEVWSESKRMLADKRYDLVVLDELTYMLAYHYLDTEEVIASLQNRPAQQSVIVTGRGCHSQILKMADTVSEIRPVKHAFDNGIQAQPGIDW
>NZ_CP040390.1|WP_001550823.1|3642755_3644408_-|class-I-fumarate-hydratase
MSKPFIWQEPFLQNKDGTEYTLISDQHITVTELDGEEVIKIAPEALTLLARQAFYEASFFLRSAHLQQVASILNDPQASSNDKYVALQLLRNAEVSAKGVLPNCQDTGTATIVASKGQQIWTGGNDAEALSKGIYSTFQENNLRFSQNAPLDMYTEVNTQTNLPAQIDISAVAGNEYHFLCVNKGGGSANKAALYQETKSLLQPEKLTAFLIEKMKSLGTAACPPYHIAFVVGGLSADQTLKVAKLASTKYYDNLPTSGNEQGQAFRDIELEKVLLEASQQFGIGAQFGGKYFAHDIRVIRLPRHGGSCPIAMALSCSADRNIKAKINKHGIWLEKLEHNPGQYIPASLREENHAQHVQLDLNRPLRDVMQDLARLPVGTRVSLSGPIVVARDIAHAKIKARLDSGEPMPDYLKHHIVYYAGPAKTPENMACGSLGPTTGGRMDGYVDTFQAAGGSLVMLSKGNRSQQVTDACHKHGGFNLGSIGGAAALLAQEYVKSLRCLEYPELGMEAVWMMEVENLPAFILVDDKGNNFFSQFEQQHRCASCPAGH
>NZ_CP040390.1|WP_000724204.1|3644515_3645796_-|dicarboxylate/amino-acid:cation-symporter
MKKISLTTMILLALVLGMIIGVVLNNTASPETAKLYAQEISIFTTIFLRLIKMIIAPLVVSTLVVGIAKMGDAKALGRIFSKTLFLFICASLLSIALGLITVNFFMPGTGINFVAHGAETTGVVASEPFTLKVFISHAFPTSIVDAMAHNEILQIVVFSIFLGCSLTAIGEKGSAIVHALDSLAHAMLKLTGYVMLFAPLTVFAAISALIAERGLAVMVSAGIFMGEFYFTMLLLWVLLIGLAIVYVGPCIRRLTRALSEPALLAFTTSSSEAAFPGTLEKLEQFGVSPKIASFVLPIGYSFNLVGSMAYCSFATVFIAQACNIHLSIGEQITMLLILMLTSKGMAGVPRASMVVIAATLNQFNIPEAGLILLMGVDPFLDMGRSATNVMSNAMGAAMVSRWEGEHFGEGCRGKALKPNESNVALP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040390_1	1.1\|1124154\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124154-1124185	32	NZ_CP048306	Escherichia coli strain 9 plasmid p009_B, complete sequence	85745-85776	0	1.0
NZ_CP040390_2	2.1\|1179931\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1179931-1179962	32	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246876-246907	0	1.0
NZ_CP040390_2	2.2\|1179992\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1179992-1180023	32	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246815-246846	0	1.0
NZ_CP040390_2	2.3\|1180053\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1180053-1180084	32	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246754-246785	0	1.0
NZ_CP040390_2	2.4\|1180114\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1180114-1180145	32	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246571-246602	0	1.0
NZ_CP040390_2	2.5\|1180175\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1180175-1180206	32	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246510-246541	0	1.0
NZ_CP040390_2	2.6\|1180236\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1180236-1180267	32	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246449-246480	0	1.0
NZ_CP040390_2	2.7\|1180297\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1180297-1180328	32	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246388-246419	0	1.0
NZ_CP040390_1	1.1\|1124154\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124154-1124185	32	NZ_CP025883	Escherichia coli strain 503440 plasmid p503440_100, complete sequence	74209-74240	1	0.969
NZ_CP040390_1	1.1\|1124154\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124154-1124185	32	NZ_CP025894	Escherichia coli strain 503025 plasmid p503025_100, complete sequence	77020-77051	1	0.969
NZ_CP040390_1	1.1\|1124154\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124154-1124185	32	NZ_CP025868	Escherichia coli strain 504211 plasmid p504211_100, complete sequence	18988-19019	1	0.969
NZ_CP040390_1	1.1\|1124154\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124154-1124185	32	CP043018	Escherichia coli strain 388808_gen plasmid unnamed3, complete sequence	7820-7851	1	0.969
NZ_CP040390_1	1.1\|1124154\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124154-1124185	32	NZ_CP023851	Escherichia coli strain 4/0 plasmid p4_0.2, complete sequence	85863-85894	1	0.969
NZ_CP040390_1	1.1\|1124154\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124154-1124185	32	NZ_AP017612	Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_2, complete sequence	84770-84801	1	0.969
NZ_CP040390_1	1.1\|1124154\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124154-1124185	32	NZ_CP025870	Escherichia coli strain 503829 plasmid p503829_100, complete sequence	91177-91208	1	0.969
NZ_CP040390_1	1.1\|1124154\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124154-1124185	32	NZ_CP028430	Escherichia coli strain RM9131 plasmid pRM9131-1, complete sequence	36203-36234	1	0.969
NZ_CP040390_1	1.1\|1124154\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124154-1124185	32	NZ_CP053233	Escherichia coli strain SCU-306 plasmid pSCU-306-2, complete sequence	88329-88360	1	0.969
NZ_CP040390_1	1.1\|1124154\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124154-1124185	32	NZ_CP019013	Escherichia coli strain Ecol_AZ162 plasmid pECAZ162_2, complete sequence	33813-33844	1	0.969
NZ_CP040390_1	1.1\|1124154\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124154-1124185	32	CP025897	Escherichia coli strain 500465 plasmid p500465_152, complete sequence	147147-147178	1	0.969
NZ_CP040390_1	1.1\|1124154\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124154-1124185	32	NZ_CP019027	Escherichia coli strain Ecol_881 plasmid pEC881_2, complete sequence	57925-57956	1	0.969
NZ_CP040390_1	1.1\|1124154\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124154-1124185	32	NZ_CP019002	Escherichia coli strain Ecol_AZ155 plasmid pECAZ155_2, complete sequence	69838-69869	1	0.969
NZ_CP040390_1	1.1\|1124154\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124154-1124185	32	NZ_CP028433	Escherichia coli strain RM9975 plasmid pRM9975-1, complete sequence	94312-94343	1	0.969
NZ_CP040390_1	1.1\|1124154\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124154-1124185	32	NZ_CP012114	Escherichia coli strain PSUO78 plasmid pPSUO78_2, complete sequence	89288-89319	1	0.969
NZ_CP040390_1	1.1\|1124154\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124154-1124185	32	MK972693	Salmonella phage SI23, complete genome	20077-20108	1	0.969
NZ_CP040390_1	1.1\|1124154\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124154-1124185	32	MK770415	Salmonella phage SF11, complete genome	1521-1552	1	0.969
NZ_CP040390_1	1.1\|1124154\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124154-1124185	32	MK972694	Salmonella phage SE22, complete genome	41165-41196	1	0.969
NZ_CP040390_1	1.1\|1124154\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124154-1124185	32	MK770414	Salmonella phage SE16, complete genome	5417-5448	1	0.969
NZ_CP040390_1	1.1\|1124154\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124154-1124185	32	MK972686	Salmonella phage SF3, complete genome	24871-24902	1	0.969
NZ_CP040390_1	1.1\|1124154\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124154-1124185	32	MK972685	Salmonella phage SE10, complete genome	26090-26121	1	0.969
NZ_CP040390_1	1.1\|1124154\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124154-1124185	32	MK972687	Salmonella phage SE1 (in:P22virus), complete genome	16364-16395	1	0.969
NZ_CP040390_1	1.1\|1124154\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124154-1124185	32	MT740315	Escherichia phage JEP4, complete genome	24063-24094	1	0.969
NZ_CP040390_1	1.1\|1124154\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124154-1124185	32	MK972692	Salmonella phage SE21, complete genome	40301-40332	1	0.969
NZ_CP040390_1	1.1\|1124154\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124154-1124185	32	MF356679	Escherichia phage D6, complete genome	78029-78060	1	0.969
NZ_CP040390_3	3.1\|1609471\|43\|NZ_CP040390\|CRISPRCasFinder	1609471-1609513	43	NC_016160	Escherichia phage HK75, complete genome	28589-28631	1	0.977
NZ_CP040390_3	3.1\|1609471\|43\|NZ_CP040390\|CRISPRCasFinder	1609471-1609513	43	NC_019705	Enterobacteria phage mEpX2, complete genome	29043-29085	1	0.977
NZ_CP040390_3	3.1\|1609471\|43\|NZ_CP040390\|CRISPRCasFinder	1609471-1609513	43	KY979108	Escherichia phage ECP1, complete genome	424-466	1	0.977
NZ_CP040390_3	3.1\|1609471\|43\|NZ_CP040390\|CRISPRCasFinder	1609471-1609513	43	NC_019719	Enterobacteria phage HK633, complete genome	31737-31779	1	0.977
NZ_CP040390_3	3.1\|1609471\|43\|NZ_CP040390\|CRISPRCasFinder	1609471-1609513	43	JF974339	Enterobacteria phage IME10, complete genome	9720-9762	1	0.977
NZ_CP040390_1	1.5\|1124398\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124398-1124429	32	NZ_CP021720	Escherichia coli strain AR_0128 plasmid tig00000793, complete sequence	108177-108208	2	0.938
NZ_CP040390_1	1.5\|1124398\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124398-1124429	32	NZ_CP020051	Escherichia coli strain AR_0118 plasmid unitig_3, complete sequence	58915-58946	2	0.938
NZ_CP040390_1	1.5\|1124398\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124398-1124429	32	KP869108	Escherichia coli O157 typing phage 10, complete genome	36668-36699	2	0.938
NZ_CP040390_1	1.5\|1124398\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124398-1124429	32	KP869107	Escherichia coli O157 typing phage 9, partial genome	36792-36823	2	0.938
NZ_CP040390_1	1.5\|1124398\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124398-1124429	32	NC_019711	Enterobacteria phage HK629, complete genome	30059-30090	2	0.938
NZ_CP040390_1	1.5\|1124398\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124398-1124429	32	NC_007804	Escherichia phage phiV10, complete genome	36258-36289	2	0.938
NZ_CP040390_1	1.5\|1124398\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124398-1124429	32	DQ126339	Enterobacteria phage phiV10, complete genome	36258-36289	2	0.938
NZ_CP040390_1	1.5\|1124398\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124398-1124429	32	MT225100	Escherichia phage Lys8385Vzw, complete genome	29553-29584	2	0.938
NZ_CP040390_1	1.10\|1124703\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124703-1124734	32	KT898133	Aeromonas phage phiARM81ld, complete genome	45655-45686	2	0.938
NZ_CP040390_3	3.1\|1609471\|43\|NZ_CP040390\|CRISPRCasFinder	1609471-1609513	43	NC_005344	Enterobacteria phage Sf6, complete genome	28407-28449	2	0.953
NZ_CP040390_3	3.1\|1609471\|43\|NZ_CP040390\|CRISPRCasFinder	1609471-1609513	43	NC_019715	Enterobacterial phage mEp234, complete genome	30405-30447	2	0.953
NZ_CP040390_3	3.1\|1609471\|43\|NZ_CP040390\|CRISPRCasFinder	1609471-1609513	43	NC_019711	Enterobacteria phage HK629, complete genome	37166-37208	2	0.953
NZ_CP040390_3	3.1\|1609471\|43\|NZ_CP040390\|CRISPRCasFinder	1609471-1609513	43	NC_019769	Enterobacteria phage HK542, complete genome	29172-29214	2	0.953
NZ_CP040390_3	3.1\|1609471\|43\|NZ_CP040390\|CRISPRCasFinder	1609471-1609513	43	NC_019768	Enterobacteria phage HK106, complete genome	32701-32743	2	0.953
NZ_CP040390_2	2.4\|1180114\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1180114-1180145	32	MN855767	Bacteriophage sp. isolate 11, complete genome	31880-31911	5	0.844
NZ_CP040390_1	1.3\|1124276\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124276-1124307	32	NC_016040	Sulfobacillus thermotolerans strain Y0017 plasmid pY0017, complete sequence	37866-37897	6	0.812
NZ_CP040390_1	1.6\|1124459\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124459-1124490	32	NZ_CP006570	Sodalis praecaptivus strain HS1 plasmid pHS1, complete sequence	200247-200278	6	0.812
NZ_CP040390_2	2.2\|1179992\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1179992-1180023	32	NZ_CP045381	Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence	394835-394866	6	0.812
NZ_CP040390_2	2.2\|1179992\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1179992-1180023	32	NZ_CP019631	Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence	62722-62753	6	0.812
NZ_CP040390_1	1.6\|1124459\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124459-1124490	32	NZ_CP047145	Streptomyces sp. HF10 plasmid plas1, complete sequence	69691-69722	7	0.781
NZ_CP040390_2	2.2\|1179992\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1179992-1180023	32	NZ_CP050254	Orbus sp. IPMB12 plasmid pIPMB12, complete sequence	17842-17873	7	0.781
NZ_CP040390_2	2.4\|1180114\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1180114-1180145	32	NZ_AP017656	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence	103191-103222	7	0.781
NZ_CP040390_2	2.7\|1180297\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1180297-1180328	32	NZ_CP036405	Komagataeibacter saccharivorans strain JH1 plasmid p221732, complete sequence	83754-83785	7	0.781
NZ_CP040390_2	2.7\|1180297\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1180297-1180328	32	NZ_CP023037	Komagataeibacter saccharivorans strain CV1 plasmid unnamed1, complete sequence	128632-128663	7	0.781
NZ_CP040390_4	4.1\|3634120\|48\|NZ_CP040390\|CRISPRCasFinder	3634120-3634167	48	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	12111-12158	7	0.854
NZ_CP040390_1	1.1\|1124154\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124154-1124185	32	MK820013	Vibrio phage vB_VpaP_MGD2, complete genome	24310-24341	8	0.75
NZ_CP040390_1	1.4\|1124337\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124337-1124368	32	MN855878	Bacteriophage sp. isolate 336, complete genome	5171-5202	8	0.75
NZ_CP040390_1	1.6\|1124459\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124459-1124490	32	NZ_AP017656	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence	234032-234063	8	0.75
NZ_CP040390_1	1.6\|1124459\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124459-1124490	32	NZ_CP011450	Sphingomonas sanxanigenens DSM 19645 = NX02 plasmid pNXO2, complete sequence	59722-59753	8	0.75
NZ_CP040390_1	1.8\|1124581\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124581-1124612	32	MN855880	Siphoviridae sp. isolate 369, complete genome	5249-5280	8	0.75
NZ_CP040390_1	1.10\|1124703\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124703-1124734	32	MN901520	Halorubrum coriense virus Hardycor2, complete genome	16524-16555	8	0.75
NZ_CP040390_2	2.8\|1180358\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1180358-1180389	32	MG925351	Mycobacterium phage MPlant7149, complete genome	32515-32546	8	0.75
NZ_CP040390_1	1.2\|1124215\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124215-1124246	32	MN340231	Escherichia phage phiv205-1, complete genome	16237-16268	9	0.719
NZ_CP040390_1	1.2\|1124215\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124215-1124246	32	CP000711	Enterobacteria phage CUS-3, complete genome	12689-12720	9	0.719
NZ_CP040390_1	1.2\|1124215\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124215-1124246	32	MH717096	Escherichia phage N7, complete genome	9978-10009	9	0.719
NZ_CP040390_1	1.6\|1124459\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124459-1124490	32	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	162356-162387	9	0.719
NZ_CP040390_1	1.8\|1124581\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124581-1124612	32	NZ_CP016463	Bosea sp. RAC05 plasmid pBSY19_1, complete sequence	542861-542892	9	0.719
NZ_CP040390_2	2.7\|1180297\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1180297-1180328	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	2552746-2552777	9	0.719
NZ_CP040390_4	4.1\|3634120\|48\|NZ_CP040390\|CRISPRCasFinder	3634120-3634167	48	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7391-7438	9	0.812
NZ_CP040390_4	4.1\|3634120\|48\|NZ_CP040390\|CRISPRCasFinder	3634120-3634167	48	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84215-84262	9	0.812
NZ_CP040390_4	4.1\|3634120\|48\|NZ_CP040390\|CRISPRCasFinder	3634120-3634167	48	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	87125-87172	9	0.812
NZ_CP040390_1	1.6\|1124459\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124459-1124490	32	MN850587	Escherichia phage mistaenkt, complete genome	62540-62571	10	0.688
NZ_CP040390_1	1.6\|1124459\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124459-1124490	32	MH791400	UNVERIFIED: Escherichia phage EcSzw-2, complete genome	63164-63195	10	0.688
NZ_CP040390_1	1.6\|1124459\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124459-1124490	32	MK562504	Enterobacteria phage CHB7, complete genome	51394-51425	10	0.688
NZ_CP040390_1	1.6\|1124459\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124459-1124490	32	NC_028808	Escherichia phage SUSP1, complete genome	60791-60822	10	0.688
NZ_CP040390_1	1.6\|1124459\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124459-1124490	32	MH791413	UNVERIFIED: Escherichia phage EcSzw_1, complete genome	62597-62628	10	0.688
NZ_CP040390_1	1.6\|1124459\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124459-1124490	32	NC_028935	Escherichia phage SUSP2, complete genome	58756-58787	10	0.688
NZ_CP040390_1	1.7\|1124520\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124520-1124551	32	MN657072	Psychrobacter sp. strain ANT_P36 plasmid pA36P2, complete sequence	2874-2905	10	0.688
NZ_CP040390_1	1.8\|1124581\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1124581-1124612	32	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	1903726-1903757	10	0.688
NZ_CP040390_4	4.1\|3634120\|48\|NZ_CP040390\|CRISPRCasFinder	3634120-3634167	48	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	15006-15053	10	0.792
NZ_CP040390_2	2.2\|1179992\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1179992-1180023	32	NC_013449	Streptomyces sp. W9 plasmid pCQ3, complete sequence	5026-5057	11	0.656
NZ_CP040390_2	2.2\|1179992\|32\|NZ_CP040390\|PILER-CR,CRISPRCasFinder,CRT	1179992-1180023	32	NC_019307	Streptomyces sp. W75 plasmid pCQ4, complete sequence	11401-11432	11	0.656
NZ_CP040390_4	4.1\|3634120\|48\|NZ_CP040390\|CRISPRCasFinder	3634120-3634167	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3371-3418	11	0.771
NZ_CP040390_4	4.1\|3634120\|48\|NZ_CP040390\|CRISPRCasFinder	3634120-3634167	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4012-4059	11	0.771
NZ_CP040390_4	4.1\|3634120\|48\|NZ_CP040390\|CRISPRCasFinder	3634120-3634167	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4113-4160	11	0.771
NZ_CP040390_4	4.1\|3634120\|48\|NZ_CP040390\|CRISPRCasFinder	3634120-3634167	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3370-3417	11	0.771
NZ_CP040390_4	4.1\|3634120\|48\|NZ_CP040390\|CRISPRCasFinder	3634120-3634167	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4011-4058	11	0.771
NZ_CP040390_4	4.1\|3634120\|48\|NZ_CP040390\|CRISPRCasFinder	3634120-3634167	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4112-4159	11	0.771
NZ_CP040390_4	4.1\|3634120\|48\|NZ_CP040390\|CRISPRCasFinder	3634120-3634167	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3370-3417	11	0.771
NZ_CP040390_4	4.1\|3634120\|48\|NZ_CP040390\|CRISPRCasFinder	3634120-3634167	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4011-4058	11	0.771
NZ_CP040390_4	4.1\|3634120\|48\|NZ_CP040390\|CRISPRCasFinder	3634120-3634167	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4112-4159	11	0.771
NZ_CP040390_4	4.1\|3634120\|48\|NZ_CP040390\|CRISPRCasFinder	3634120-3634167	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3370-3417	11	0.771
NZ_CP040390_4	4.1\|3634120\|48\|NZ_CP040390\|CRISPRCasFinder	3634120-3634167	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4011-4058	11	0.771
NZ_CP040390_4	4.1\|3634120\|48\|NZ_CP040390\|CRISPRCasFinder	3634120-3634167	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4112-4159	11	0.771
NZ_CP040390_4	4.1\|3634120\|48\|NZ_CP040390\|CRISPRCasFinder	3634120-3634167	48	MT230402	Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence	270-317	11	0.771
NZ_CP040390_4	4.1\|3634120\|48\|NZ_CP040390\|CRISPRCasFinder	3634120-3634167	48	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	101195-101242	11	0.771
NZ_CP040390_4	4.1\|3634120\|48\|NZ_CP040390\|CRISPRCasFinder	3634120-3634167	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	208980-209027	12	0.75
NZ_CP040390_4	4.1\|3634120\|48\|NZ_CP040390\|CRISPRCasFinder	3634120-3634167	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	219474-219521	12	0.75
NZ_CP040390_4	4.1\|3634120\|48\|NZ_CP040390\|CRISPRCasFinder	3634120-3634167	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	210308-210355	12	0.75
NZ_CP040390_4	4.1\|3634120\|48\|NZ_CP040390\|CRISPRCasFinder	3634120-3634167	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	191263-191310	12	0.75
NZ_CP040390_4	4.1\|3634120\|48\|NZ_CP040390\|CRISPRCasFinder	3634120-3634167	48	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31250-31297	12	0.75
NZ_CP040390_4	4.1\|3634120\|48\|NZ_CP040390\|CRISPRCasFinder	3634120-3634167	48	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	158-205	12	0.75

1. spacer 1.1|1124154|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048306 (Escherichia coli strain 9 plasmid p009_B, complete sequence) position: , mismatch: 0, identity: 1.0

tttgctgagtgtgcatacacacttgaacatca	CRISPR spacer
tttgctgagtgtgcatacacacttgaacatca	Protospacer
********************************

2. spacer 2.1|1179931|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

ggctttaaccacacgagcaagtccttcgctgg	CRISPR spacer
ggctttaaccacacgagcaagtccttcgctgg	Protospacer
********************************

3. spacer 2.2|1179992|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

agttaacaacccgcgccgaacaagcccgacaa	CRISPR spacer
agttaacaacccgcgccgaacaagcccgacaa	Protospacer
********************************

4. spacer 2.3|1180053|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcaccgcgttaatccggcagaaaaacaaca	CRISPR spacer
tcgcaccgcgttaatccggcagaaaaacaaca	Protospacer
********************************

5. spacer 2.4|1180114|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

ttcgccgccatcatcctgtggtgccagttgac	CRISPR spacer
ttcgccgccatcatcctgtggtgccagttgac	Protospacer
********************************

6. spacer 2.5|1180175|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

gcgcctcggttgtttagccatgctcagcccca	CRISPR spacer
gcgcctcggttgtttagccatgctcagcccca	Protospacer
********************************

7. spacer 2.6|1180236|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

ctttccacccaggcactgatactccacataaa	CRISPR spacer
ctttccacccaggcactgatactccacataaa	Protospacer
********************************

8. spacer 2.7|1180297|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

gatcgccgggcgcggttacccgctgcgaaaat	CRISPR spacer
gatcgccgggcgcggttacccgctgcgaaaat	Protospacer
********************************

9. spacer 1.1|1124154|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025883 (Escherichia coli strain 503440 plasmid p503440_100, complete sequence) position: , mismatch: 1, identity: 0.969

tttgctgagtgtgcatacacacttgaacatca	CRISPR spacer
tttgcggagtgtgcatacacacttgaacatca	Protospacer
***** **************************

10. spacer 1.1|1124154|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025894 (Escherichia coli strain 503025 plasmid p503025_100, complete sequence) position: , mismatch: 1, identity: 0.969

tttgctgagtgtgcatacacacttgaacatca	CRISPR spacer
tttgcggagtgtgcatacacacttgaacatca	Protospacer
***** **************************

11. spacer 1.1|1124154|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025868 (Escherichia coli strain 504211 plasmid p504211_100, complete sequence) position: , mismatch: 1, identity: 0.969

tttgctgagtgtgcatacacacttgaacatca	CRISPR spacer
tttgcggagtgtgcatacacacttgaacatca	Protospacer
***** **************************

12. spacer 1.1|1124154|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to CP043018 (Escherichia coli strain 388808_gen plasmid unnamed3, complete sequence) position: , mismatch: 1, identity: 0.969

tttgctgagtgtgcatacacacttgaacatca	CRISPR spacer
tttgctgagtgcgcatacacacttgaacatca	Protospacer
***********.********************

13. spacer 1.1|1124154|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023851 (Escherichia coli strain 4/0 plasmid p4_0.2, complete sequence) position: , mismatch: 1, identity: 0.969

tttgctgagtgtgcatacacacttgaacatca	CRISPR spacer
tttgcggagtgtgcatacacacttgaacatca	Protospacer
***** **************************

14. spacer 1.1|1124154|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017612 (Escherichia coli strain 20Ec-P-124 plasmid pMRY16-002_2, complete sequence) position: , mismatch: 1, identity: 0.969

tttgctgagtgtgcatacacacttgaacatca	CRISPR spacer
tttgctgagtgcgcatacacacttgaacatca	Protospacer
***********.********************

15. spacer 1.1|1124154|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025870 (Escherichia coli strain 503829 plasmid p503829_100, complete sequence) position: , mismatch: 1, identity: 0.969

tttgctgagtgtgcatacacacttgaacatca	CRISPR spacer
tttgcggagtgtgcatacacacttgaacatca	Protospacer
***** **************************

16. spacer 1.1|1124154|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028430 (Escherichia coli strain RM9131 plasmid pRM9131-1, complete sequence) position: , mismatch: 1, identity: 0.969

tttgctgagtgtgcatacacacttgaacatca	CRISPR spacer
tttgctgagtgcgcatacacacttgaacatca	Protospacer
***********.********************

17. spacer 1.1|1124154|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053233 (Escherichia coli strain SCU-306 plasmid pSCU-306-2, complete sequence) position: , mismatch: 1, identity: 0.969

tttgctgagtgtgcatacacacttgaacatca	CRISPR spacer
tttgctgagtgcgcatacacacttgaacatca	Protospacer
***********.********************

18. spacer 1.1|1124154|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019013 (Escherichia coli strain Ecol_AZ162 plasmid pECAZ162_2, complete sequence) position: , mismatch: 1, identity: 0.969

tttgctgagtgtgcatacacacttgaacatca	CRISPR spacer
tttgcggagtgtgcatacacacttgaacatca	Protospacer
***** **************************

19. spacer 1.1|1124154|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to CP025897 (Escherichia coli strain 500465 plasmid p500465_152, complete sequence) position: , mismatch: 1, identity: 0.969

tttgctgagtgtgcatacacacttgaacatca	CRISPR spacer
tttgcggagtgtgcatacacacttgaacatca	Protospacer
***** **************************

20. spacer 1.1|1124154|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019027 (Escherichia coli strain Ecol_881 plasmid pEC881_2, complete sequence) position: , mismatch: 1, identity: 0.969

tttgctgagtgtgcatacacacttgaacatca	CRISPR spacer
tttgcggagtgtgcatacacacttgaacatca	Protospacer
***** **************************

21. spacer 1.1|1124154|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019002 (Escherichia coli strain Ecol_AZ155 plasmid pECAZ155_2, complete sequence) position: , mismatch: 1, identity: 0.969

tttgctgagtgtgcatacacacttgaacatca	CRISPR spacer
tttgctgagtgcgcatacacacttgaacatca	Protospacer
***********.********************

22. spacer 1.1|1124154|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028433 (Escherichia coli strain RM9975 plasmid pRM9975-1, complete sequence) position: , mismatch: 1, identity: 0.969

tttgctgagtgtgcatacacacttgaacatca	CRISPR spacer
tttgctgagtgcgcatacacacttgaacatca	Protospacer
***********.********************

23. spacer 1.1|1124154|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012114 (Escherichia coli strain PSUO78 plasmid pPSUO78_2, complete sequence) position: , mismatch: 1, identity: 0.969

tttgctgagtgtgcatacacacttgaacatca	CRISPR spacer
tttgcggagtgtgcatacacacttgaacatca	Protospacer
***** **************************

24. spacer 1.1|1124154|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to MK972693 (Salmonella phage SI23, complete genome) position: , mismatch: 1, identity: 0.969

tttgctgagtgtgcatacacacttgaacatca	CRISPR spacer
tttgcggagtgtgcatacacacttgaacatca	Protospacer
***** **************************

25. spacer 1.1|1124154|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to MK770415 (Salmonella phage SF11, complete genome) position: , mismatch: 1, identity: 0.969

tttgctgagtgtgcatacacacttgaacatca	CRISPR spacer
tttgcggagtgtgcatacacacttgaacatca	Protospacer
***** **************************

26. spacer 1.1|1124154|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to MK972694 (Salmonella phage SE22, complete genome) position: , mismatch: 1, identity: 0.969

tttgctgagtgtgcatacacacttgaacatca	CRISPR spacer
tttgcggagtgtgcatacacacttgaacatca	Protospacer
***** **************************

27. spacer 1.1|1124154|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to MK770414 (Salmonella phage SE16, complete genome) position: , mismatch: 1, identity: 0.969

tttgctgagtgtgcatacacacttgaacatca	CRISPR spacer
tttgcggagtgtgcatacacacttgaacatca	Protospacer
***** **************************

28. spacer 1.1|1124154|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to MK972686 (Salmonella phage SF3, complete genome) position: , mismatch: 1, identity: 0.969

tttgctgagtgtgcatacacacttgaacatca	CRISPR spacer
tttgcggagtgtgcatacacacttgaacatca	Protospacer
***** **************************

29. spacer 1.1|1124154|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to MK972685 (Salmonella phage SE10, complete genome) position: , mismatch: 1, identity: 0.969

tttgctgagtgtgcatacacacttgaacatca	CRISPR spacer
tttgcggagtgtgcatacacacttgaacatca	Protospacer
***** **************************

30. spacer 1.1|1124154|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to MK972687 (Salmonella phage SE1 (in:P22virus), complete genome) position: , mismatch: 1, identity: 0.969

tttgctgagtgtgcatacacacttgaacatca	CRISPR spacer
tttgcggagtgtgcatacacacttgaacatca	Protospacer
***** **************************

31. spacer 1.1|1124154|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to MT740315 (Escherichia phage JEP4, complete genome) position: , mismatch: 1, identity: 0.969

tttgctgagtgtgcatacacacttgaacatca	CRISPR spacer
tttgcggagtgtgcatacacacttgaacatca	Protospacer
***** **************************

32. spacer 1.1|1124154|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to MK972692 (Salmonella phage SE21, complete genome) position: , mismatch: 1, identity: 0.969

tttgctgagtgtgcatacacacttgaacatca	CRISPR spacer
tttgcggagtgtgcatacacacttgaacatca	Protospacer
***** **************************

33. spacer 1.1|1124154|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to MF356679 (Escherichia phage D6, complete genome) position: , mismatch: 1, identity: 0.969

tttgctgagtgtgcatacacacttgaacatca	CRISPR spacer
tttgctgagtgcgcatacacacttgaacatca	Protospacer
***********.********************

34. spacer 3.1|1609471|43|NZ_CP040390|CRISPRCasFinder matches to NC_016160 (Escherichia phage HK75, complete genome) position: , mismatch: 1, identity: 0.977

gttgtccaacgcaaaccccagtaatggcgcggctctcagcgga	CRISPR spacer
gttgtccaacgcaaacaccagtaatggcgcggctctcagcgga	Protospacer
**************** **************************

35. spacer 3.1|1609471|43|NZ_CP040390|CRISPRCasFinder matches to NC_019705 (Enterobacteria phage mEpX2, complete genome) position: , mismatch: 1, identity: 0.977

gttgtccaacgcaaaccccagtaatggcgcggctctcagcgga	CRISPR spacer
gttgtccaacgcaaacaccagtaatggcgcggctctcagcgga	Protospacer
**************** **************************

36. spacer 3.1|1609471|43|NZ_CP040390|CRISPRCasFinder matches to KY979108 (Escherichia phage ECP1, complete genome) position: , mismatch: 1, identity: 0.977

gttgtccaacgcaaaccccagtaatggcgcggctctcagcgga	CRISPR spacer
gttgtccaacgcaaacaccagtaatggcgcggctctcagcgga	Protospacer
**************** **************************

37. spacer 3.1|1609471|43|NZ_CP040390|CRISPRCasFinder matches to NC_019719 (Enterobacteria phage HK633, complete genome) position: , mismatch: 1, identity: 0.977

gttgtccaacgcaaaccccagtaatggcgcggctctcagcgga	CRISPR spacer
gttgtccaacgcaaacaccagtaatggcgcggctctcagcgga	Protospacer
**************** **************************

38. spacer 3.1|1609471|43|NZ_CP040390|CRISPRCasFinder matches to JF974339 (Enterobacteria phage IME10, complete genome) position: , mismatch: 1, identity: 0.977

gttgtccaacgcaaaccccagtaatggcgcggctctcagcgga	CRISPR spacer
gttgtccaacgcaaacaccagtaatggcgcggctctcagcgga	Protospacer
**************** **************************

39. spacer 1.5|1124398|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021720 (Escherichia coli strain AR_0128 plasmid tig00000793, complete sequence) position: , mismatch: 2, identity: 0.938

agcaacaggtatttcatatggcctgccgtgct	CRISPR spacer
agcaacgggtatttcaaatggcctgccgtgct	Protospacer
******.********* ***************

40. spacer 1.5|1124398|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020051 (Escherichia coli strain AR_0118 plasmid unitig_3, complete sequence) position: , mismatch: 2, identity: 0.938

agcaacaggtatttcatatggcctgccgtgct	CRISPR spacer
agcaacgggtatttcaaatggcctgccgtgct	Protospacer
******.********* ***************

41. spacer 1.5|1124398|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to KP869108 (Escherichia coli O157 typing phage 10, complete genome) position: , mismatch: 2, identity: 0.938

agcaacaggtatttcatatggcctgccgtgct	CRISPR spacer
agcaactggtatttcaaatggcctgccgtgct	Protospacer
****** ********* ***************

42. spacer 1.5|1124398|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to KP869107 (Escherichia coli O157 typing phage 9, partial genome) position: , mismatch: 2, identity: 0.938

agcaacaggtatttcatatggcctgccgtgct	CRISPR spacer
agcaactggtatttcaaatggcctgccgtgct	Protospacer
****** ********* ***************

43. spacer 1.5|1124398|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NC_019711 (Enterobacteria phage HK629, complete genome) position: , mismatch: 2, identity: 0.938

agcaacaggtatttcatatggcctgccgtgct	CRISPR spacer
agcaactggtatttcaaatggcctgccgtgct	Protospacer
****** ********* ***************

44. spacer 1.5|1124398|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NC_007804 (Escherichia phage phiV10, complete genome) position: , mismatch: 2, identity: 0.938

agcaacaggtatttcatatggcctgccgtgct	CRISPR spacer
agcaactggtatttcaaatggcctgccgtgct	Protospacer
****** ********* ***************

45. spacer 1.5|1124398|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to DQ126339 (Enterobacteria phage phiV10, complete genome) position: , mismatch: 2, identity: 0.938

agcaacaggtatttcatatggcctgccgtgct	CRISPR spacer
agcaactggtatttcaaatggcctgccgtgct	Protospacer
****** ********* ***************

46. spacer 1.5|1124398|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to MT225100 (Escherichia phage Lys8385Vzw, complete genome) position: , mismatch: 2, identity: 0.938

agcaacaggtatttcatatggcctgccgtgct	CRISPR spacer
agcaactggtatttcaaatggcctgccgtgct	Protospacer
****** ********* ***************

47. spacer 1.10|1124703|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to KT898133 (Aeromonas phage phiARM81ld, complete genome) position: , mismatch: 2, identity: 0.938

gacgatgagacgccctggtgtgccgcgttcgt	CRISPR spacer
gacgacgagacgccctggtgcgccgcgttcgt	Protospacer
*****.**************.***********

48. spacer 3.1|1609471|43|NZ_CP040390|CRISPRCasFinder matches to NC_005344 (Enterobacteria phage Sf6, complete genome) position: , mismatch: 2, identity: 0.953

gttgtccaacgcaaaccccagtaatggcgcggctctcagcgga	CRISPR spacer
tttgtccaacgcaaacaccagtaatggcgcggctctcagcgga	Protospacer
 *************** **************************

49. spacer 3.1|1609471|43|NZ_CP040390|CRISPRCasFinder matches to NC_019715 (Enterobacterial phage mEp234, complete genome) position: , mismatch: 2, identity: 0.953

gttgtccaacgcaaaccccagtaatggcgcggctctcagcgga	CRISPR spacer
gttgtccaacgcaaacaccagtaatggcgcggatctcagcgga	Protospacer
**************** *************** **********

50. spacer 3.1|1609471|43|NZ_CP040390|CRISPRCasFinder matches to NC_019711 (Enterobacteria phage HK629, complete genome) position: , mismatch: 2, identity: 0.953

gttgtccaacgcaaaccccagtaatggcgcggctctcagcgga	CRISPR spacer
gttgtccaacgcaaacaccagtaatggcgcgtctctcagcgga	Protospacer
**************** ************** ***********

51. spacer 3.1|1609471|43|NZ_CP040390|CRISPRCasFinder matches to NC_019769 (Enterobacteria phage HK542, complete genome) position: , mismatch: 2, identity: 0.953

gttgtccaacgcaaaccccagtaatggcgcggctctcagcgga	CRISPR spacer
gttgtccaacgcaaacaccagtaatggtgcggctctcagcgga	Protospacer
**************** **********.***************

52. spacer 3.1|1609471|43|NZ_CP040390|CRISPRCasFinder matches to NC_019768 (Enterobacteria phage HK106, complete genome) position: , mismatch: 2, identity: 0.953

gttgtccaacgcaaaccccagtaatggcgcggctctcagcgga	CRISPR spacer
gttgtccaacgcaaacaccagtaatggcgcggatctcagcgga	Protospacer
**************** *************** **********

53. spacer 2.4|1180114|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to MN855767 (Bacteriophage sp. isolate 11, complete genome) position: , mismatch: 5, identity: 0.844

ttcgccgccatcatcctgtggtgccagttgac	CRISPR spacer
gaagccgccatcatcttgtggtgccagttaac	Protospacer
   ************.*************.**

54. spacer 1.3|1124276|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NC_016040 (Sulfobacillus thermotolerans strain Y0017 plasmid pY0017, complete sequence) position: , mismatch: 6, identity: 0.812

tgcacgccctgccggaatctcccctcgctctc	CRISPR spacer
tgcacgccctgccggaagatcccctcacgatt	Protospacer
*****************  *******.*  *.

55. spacer 1.6|1124459|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006570 (Sodalis praecaptivus strain HS1 plasmid pHS1, complete sequence) position: , mismatch: 6, identity: 0.812

gccagcggcgctgagtacgacgacctgattaa	CRISPR spacer
gaccgaggcgcagagaacgacgacctgattat	Protospacer
* * * ***** *** ***************

56. spacer 2.2|1179992|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045381 (Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence) position: , mismatch: 6, identity: 0.812

-agttaacaacccgcgccgaacaagcccgacaa	CRISPR spacer
tcgttga-agcccgcgccgaacatgaccgacaa	Protospacer
  ***.* *.************* * *******

57. spacer 2.2|1179992|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019631 (Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

-agttaacaacccgcgccgaacaagcccgacaa	CRISPR spacer
tcgttga-agcccgcgccgaacatgaccgacaa	Protospacer
  ***.* *.************* * *******

58. spacer 1.6|1124459|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047145 (Streptomyces sp. HF10 plasmid plas1, complete sequence) position: , mismatch: 7, identity: 0.781

gccagcggcgctgagtacgacgac--ctgattaa	CRISPR spacer
gccagcggcgcggactacgacgacatccggct--	Protospacer
*********** ** *********  *.*..*

59. spacer 2.2|1179992|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050254 (Orbus sp. IPMB12 plasmid pIPMB12, complete sequence) position: , mismatch: 7, identity: 0.781

agttaacaacccgcgccgaacaagcccgacaa	CRISPR spacer
tgttaaaaacccccgccgaacaagctcactaa	Protospacer
 ***** ***** ************.*. .**

60. spacer 2.4|1180114|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017656 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence) position: , mismatch: 7, identity: 0.781

ttcgccgccatcatcctgtggtgccagttgac	CRISPR spacer
ttcgccgccatcatcttctggtgcatgtccat	Protospacer
***************.* ******  **. *.

61. spacer 2.7|1180297|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036405 (Komagataeibacter saccharivorans strain JH1 plasmid p221732, complete sequence) position: , mismatch: 7, identity: 0.781

gatcgccgggcgcggttacccgctgcgaaaat	CRISPR spacer
tatcgccgggcgcggctgcccgctgcgtcacg	Protospacer
 **************.*.*********  *

62. spacer 2.7|1180297|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023037 (Komagataeibacter saccharivorans strain CV1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

gatcgccgggcgcggttacccgctgcgaaaat	CRISPR spacer
tatcgccgggcgcggctgcccgctgcgtcacg	Protospacer
 **************.*.*********  *

63. spacer 4.1|3634120|48|NZ_CP040390|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 7, identity: 0.854

aaatcgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gactcgtaggcctgataagacgcgccagcgtcgcatcaggcaccgaac	Protospacer
.* ********************** ****************   *.*

64. spacer 1.1|1124154|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to MK820013 (Vibrio phage vB_VpaP_MGD2, complete genome) position: , mismatch: 8, identity: 0.75

tttgctgagtgtgcatacacacttgaacatca	CRISPR spacer
gtagctgactgtgcgtacacacttgaagtact	Protospacer
 * ***** *****.************   *

65. spacer 1.4|1124337|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to MN855878 (Bacteriophage sp. isolate 336, complete genome) position: , mismatch: 8, identity: 0.75

agtaagccggttgattatcgcca----gggatatta	CRISPR spacer
agtaagcaggatgattatcgccaccatggcgt----	Protospacer
******* ** ************    ** .*

66. spacer 1.6|1124459|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017656 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence) position: , mismatch: 8, identity: 0.75

gccagcggcgctgagtacgacgacctgattaa	CRISPR spacer
gcccgcggcgctgagtgcgacgaccatgctct	Protospacer
*** ************.********  ..*

67. spacer 1.6|1124459|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011450 (Sphingomonas sanxanigenens DSM 19645 = NX02 plasmid pNXO2, complete sequence) position: , mismatch: 8, identity: 0.75

gccagcggcgctgagtacgacgacctgattaa	CRISPR spacer
gcccgcggcgctgagtgcgacgaccatgctct	Protospacer
*** ************.********  ..*

68. spacer 1.8|1124581|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to MN855880 (Siphoviridae sp. isolate 369, complete genome) position: , mismatch: 8, identity: 0.75

atttttgcgcggcctgcatgaaaccagtggca	CRISPR spacer
tgttttgcggggccttcatgaaaccaggcggg	Protospacer
  ******* ***** ***********  * .

69. spacer 1.10|1124703|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to MN901520 (Halorubrum coriense virus Hardycor2, complete genome) position: , mismatch: 8, identity: 0.75

--gacgatgagacgccctggtgtgccgcgttcgt	CRISPR spacer
ccgccgcc--gacgctcgggtgtgccgcgttcgg	Protospacer
  * ** .  *****.* ***************

70. spacer 2.8|1180358|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to MG925351 (Mycobacterium phage MPlant7149, complete genome) position: , mismatch: 8, identity: 0.75

ctcacgcgaggcatcgatcgtgatctgattgt	CRISPR spacer
gacgcccgaggcatcggccgtgatctgatgga	Protospacer
  *.* **********..*********** *

71. spacer 1.2|1124215|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to MN340231 (Escherichia phage phiv205-1, complete genome) position: , mismatch: 9, identity: 0.719

ctatcagtaacaacctggtaaatatcggtttt	CRISPR spacer
acaattacaacaacctggcaaatatcggtctt	Protospacer
 .* . ..**********.**********.**

72. spacer 1.2|1124215|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to CP000711 (Enterobacteria phage CUS-3, complete genome) position: , mismatch: 9, identity: 0.719

ctatcagtaacaacctggtaaatatcggtttt	CRISPR spacer
acaattacaacaacctggcaaatatcggtctt	Protospacer
 .* . ..**********.**********.**

73. spacer 1.2|1124215|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to MH717096 (Escherichia phage N7, complete genome) position: , mismatch: 9, identity: 0.719

ctatcagtaacaacctggtaaatatcggtttt	CRISPR spacer
acaattacaacaacctggcaaatatcggtctt	Protospacer
 .* . ..**********.**********.**

74. spacer 1.6|1124459|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

gccagcggcgctgagtacgacgacctgattaa	CRISPR spacer
gctggcggtgctgaggacgacgacctgcagcg	Protospacer
**..****.****** ***********    .

75. spacer 1.8|1124581|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016463 (Bosea sp. RAC05 plasmid pBSY19_1, complete sequence) position: , mismatch: 9, identity: 0.719

atttttgcgcggcctgcatgaaaccagtggca	CRISPR spacer
gtcattccgccgcctgcatgaaaccaggcgtc	Protospacer
.*. ** *** ****************  *.

76. spacer 2.7|1180297|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.719

gatcgccgggcgcggttacccgctgcgaaaat	CRISPR spacer
cgccgccgagcgcggtcacccgctgcgcgacc	Protospacer
 ..*****.*******.********** .* .

77. spacer 4.1|3634120|48|NZ_CP040390|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 9, identity: 0.812

aaatcgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gttttgtaggcatgataagacgcgccagcgtcgcatcaggcatccggc	Protospacer
.  *.****** ************* ****************  *.**

78. spacer 4.1|3634120|48|NZ_CP040390|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 9, identity: 0.812

aaatcgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gttttgtaggcatgataagacgcgccagcgtcgcatcaggcatccggc	Protospacer
.  *.****** ************* ****************  *.**

79. spacer 4.1|3634120|48|NZ_CP040390|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.812

aaatcgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
attttgtaggcctgataagacgcggcagcgtcgcatcaggcatcgtgc	Protospacer
*  *.*******************  ****************    **

80. spacer 1.6|1124459|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to MN850587 (Escherichia phage mistaenkt, complete genome) position: , mismatch: 10, identity: 0.688

gccagcggcgctgagtacgacgacctgattaa	CRISPR spacer
tctctaaaagctgtctacgacgacctgattaa	Protospacer
 *.   .. ****  *****************

81. spacer 1.6|1124459|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to MH791400 (UNVERIFIED: Escherichia phage EcSzw-2, complete genome) position: , mismatch: 10, identity: 0.688

gccagcggcgctgagtacgacgacctgattaa	CRISPR spacer
tctctaaaagctgtctacgacgacctgattaa	Protospacer
 *.   .. ****  *****************

82. spacer 1.6|1124459|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to MK562504 (Enterobacteria phage CHB7, complete genome) position: , mismatch: 10, identity: 0.688

gccagcggcgctgagtacgacgacctgattaa	CRISPR spacer
tctctaaaagctgtctacgacgacctgattaa	Protospacer
 *.   .. ****  *****************

83. spacer 1.6|1124459|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NC_028808 (Escherichia phage SUSP1, complete genome) position: , mismatch: 10, identity: 0.688

gccagcggcgctgagtacgacgacctgattaa	CRISPR spacer
tctctaaaagctgtctacgacgacctgattaa	Protospacer
 *.   .. ****  *****************

84. spacer 1.6|1124459|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to MH791413 (UNVERIFIED: Escherichia phage EcSzw_1, complete genome) position: , mismatch: 10, identity: 0.688

gccagcggcgctgagtacgacgacctgattaa	CRISPR spacer
tctctaaaagctgtctacgacgacctgattaa	Protospacer
 *.   .. ****  *****************

85. spacer 1.6|1124459|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NC_028935 (Escherichia phage SUSP2, complete genome) position: , mismatch: 10, identity: 0.688

gccagcggcgctgagtacgacgacctgattaa	CRISPR spacer
tctctaaaagctgtctacgacgacctgattaa	Protospacer
 *.   .. ****  *****************

86. spacer 1.7|1124520|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to MN657072 (Psychrobacter sp. strain ANT_P36 plasmid pA36P2, complete sequence) position: , mismatch: 10, identity: 0.688

tttgttttgatgatttatcagtatatgaattg	CRISPR spacer
aagattttgatgatttatcagaagatgttcag	Protospacer
   .***************** * ***  . *

87. spacer 1.8|1124581|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 10, identity: 0.688

atttttgcgcggcctgcatgaaaccagtggca	CRISPR spacer
cgaggtgcgcagcctgcatgaaacctgtgatg	Protospacer
     *****.************** ***...

88. spacer 4.1|3634120|48|NZ_CP040390|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 10, identity: 0.792

aaatcgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctggt	Protospacer
.. ******** ************* ****************  ..*.

89. spacer 2.2|1179992|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NC_013449 (Streptomyces sp. W9 plasmid pCQ3, complete sequence) position: , mismatch: 11, identity: 0.656

agttaacaacccgcgccgaacaagcccgacaa	CRISPR spacer
ccgcctggacccccgccgaacaagcccaacac	Protospacer
   .   .**** **************.***

90. spacer 2.2|1179992|32|NZ_CP040390|PILER-CR,CRISPRCasFinder,CRT matches to NC_019307 (Streptomyces sp. W75 plasmid pCQ4, complete sequence) position: , mismatch: 11, identity: 0.656

agttaacaacccgcgccgaacaagcccgacaa	CRISPR spacer
ccgcctggacccccgccgaacaagcccaacac	Protospacer
   .   .**** **************.***

91. spacer 4.1|3634120|48|NZ_CP040390|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771

aaatcgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. ******** ************* ****************  ..

92. spacer 4.1|3634120|48|NZ_CP040390|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771

aaatcgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. *.****** ************* ****************  ..

93. spacer 4.1|3634120|48|NZ_CP040390|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771

aaatcgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. *.****** ************* ****************  ..

94. spacer 4.1|3634120|48|NZ_CP040390|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771

aaatcgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. ******** ************* ****************  ..

95. spacer 4.1|3634120|48|NZ_CP040390|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771

aaatcgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. *.****** ************* ****************  ..

96. spacer 4.1|3634120|48|NZ_CP040390|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771

aaatcgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. *.****** ************* ****************  ..

97. spacer 4.1|3634120|48|NZ_CP040390|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771

aaatcgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. ******** ************* ****************  ..

98. spacer 4.1|3634120|48|NZ_CP040390|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771

aaatcgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. *.****** ************* ****************  ..

99. spacer 4.1|3634120|48|NZ_CP040390|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771

aaatcgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. *.****** ************* ****************  ..

100. spacer 4.1|3634120|48|NZ_CP040390|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771

aaatcgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. ******** ************* ****************  ..

101. spacer 4.1|3634120|48|NZ_CP040390|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771

aaatcgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. *.****** ************* ****************  ..

102. spacer 4.1|3634120|48|NZ_CP040390|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771

aaatcgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. *.****** ************* ****************  ..

103. spacer 4.1|3634120|48|NZ_CP040390|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 11, identity: 0.771

aaatcgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggtttgtaggcctgataagacgcgacagcgtcgcatcaggcattgatt	Protospacer
.. *.*******************  ****************   * .

104. spacer 4.1|3634120|48|NZ_CP040390|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.771

aaatcgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
taatacaaggcctgataagacgcgccagcgtcgcatcaggcgctgaat	Protospacer
 ***   ****************** ***************.   *..

105. spacer 4.1|3634120|48|NZ_CP040390|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaatcgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

106. spacer 4.1|3634120|48|NZ_CP040390|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaatcgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

107. spacer 4.1|3634120|48|NZ_CP040390|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaatcgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

108. spacer 4.1|3634120|48|NZ_CP040390|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaatcgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

109. spacer 4.1|3634120|48|NZ_CP040390|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 12, identity: 0.75

aaatcgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
cggctgtaggcctgataagacgcgacagcgtcgcatcaggcattgatt	Protospacer
 ....*******************  ****************   * .

110. spacer 4.1|3634120|48|NZ_CP040390|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 12, identity: 0.75

aaatcgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gtctngtaggcctgataagacgcgtcagcgtcgcatcaggcttcaatt	Protospacer
.  * *******************. ***************    * .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1040781 : 1047896

Salmonella_phage(33.33%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000603518.1\|1040781_1041543_+	2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	Q06VL0	Trichoplusia_ni_ascovirus	7.7e-19	31.7
WP_012579081.1\|1042008_1042932_-\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	2.2e-177	99.7
WP_012579082.1\|1043011_1043887_-	class A extended-spectrum beta-lactamase CTX-M-24	A0A1B0VBP7	Salmonella_phage	2.3e-152	99.3
WP_000608644.1\|1044136_1045399_-\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
WP_000256426.1\|1045836_1047255_+	sugar porter family MFS transporter	O13311	Aichi_virus	1.8e-24	26.9
WP_000502112.1\|1047437_1047896_+\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	1.0e-13	32.3

DBSCAN-SWA_2

1134016 : 1188062

Escherichia_phage(47.37%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106106683.1\|1134016_1135365_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	4.3e-73	51.7
WP_001130266.1\|1135499_1136075_-	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA
WP_000109536.1\|1136091_1136352_-	ferredoxin family protein	NA	NA	NA	NA
WP_094158903.1\|1136342_1137614_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_000987944.1\|1137691_1138057_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_001551556.1\|1138372_1140172_+	NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA	NA	NA	NA
WP_001290706.1\|1140171_1141884_+	assimilatory sulfite reductase (NADPH) hemoprotein subunit	NA	NA	NA	NA
WP_001521160.1\|1141957_1142692_+	phosphoadenosine phosphosulfate reductase	NA	NA	NA	NA
WP_000956458.1\|1142956_1143109_+	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
WP_001551555.1\|1143303_1146003_+	CRISPR-associated helicase/endonuclease Cas3	NA	NA	NA	NA
WP_001551554.1\|1146100_1147663_+	type I-E CRISPR-associated protein Cse1/CasA	NA	NA	NA	NA
WP_000029331.1\|1147659_1148196_+	type I-E CRISPR-associated protein Cse2/CasB	NA	NA	NA	NA
WP_000206445.1\|1148210_1149266_+	type I-E CRISPR-associated protein Cas7/Cse4/CasC	NA	NA	NA	NA
WP_001551553.1\|1149276_1150023_+	type I-E CRISPR-associated protein Cas5/CasD	NA	NA	NA	NA
WP_000281438.1\|1150004_1150655_+	type I-E CRISPR-associated protein Cas6/Cse3/CasE	NA	NA	NA	NA
WP_060579132.1\|1150651_1151539_+	type I-E CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
WP_001067858.1\|1151572_1152277_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_000027057.1\|1152748_1153609_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_138585042.1\|1153885_1154290_-	hypothetical protein	NA	NA	NA	NA
WP_001067858.1\|1154266_1154971_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_000301062.1\|1155308_1155737_+	transporter	NA	NA	NA	NA
WP_001551545.1\|1155775_1156120_-	nitrous oxide-stimulated promoter family protein	NA	NA	NA	NA
WP_001272891.1\|1156406_1158968_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	2.7e-31	20.7
WP_001141345.1\|1159073_1159730_+	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	5.0e-51	47.0
WP_001295181.1\|1159780_1160548_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	2.5e-70	56.7
WP_000847985.1\|1160743_1161652_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
WP_001551546.1\|1161648_1162911_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	3.7e-135	61.2
WP_001278994.1\|1162907_1163546_+	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0
WP_001136925.1\|1163550_1164327_+	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_000104457.1\|1164415_1165780_+	GntP family transporter	NA	NA	NA	NA
WP_000562982.1\|1165818_1166055_-	hypothetical protein	NA	NA	NA	NA
WP_001551547.1\|1166065_1167493_-	UbiD family decarboxylase	NA	NA	NA	NA
WP_001237173.1\|1167492_1168086_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_001208066.1\|1168232_1168640_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_000081550.1\|1168760_1169753_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.1e-32	37.6
WP_001272592.1\|1169815_1170955_-	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	1.7e-06	35.6
WP_000254708.1\|1171094_1171721_-	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.7e-36	49.7
WP_001295182.1\|1171714_1172476_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.4e-59	48.0
WP_000568924.1\|1172456_1173506_-\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_001219242.1\|1173502_1173982_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_000246131.1\|1173981_1174692_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000517476.1\|1174710_1175022_-	cell division protein FtsB	NA	NA	NA	NA
WP_001551549.1\|1175215_1175539_-	DUF3561 family protein	NA	NA	NA	NA
WP_001173673.1\|1175588_1176194_-	adenylyl-sulfate kinase	A0A2K9L4R9	Tupanvirus	4.2e-28	38.1
WP_001551550.1\|1176193_1177621_-	sulfate adenylyltransferase subunit CysN	A0A1V0SGC3	Hokovirus	9.7e-31	31.4
WP_000372108.1\|1177622_1178531_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA
WP_001551551.1\|1178782_1179820_+	alkaline phosphatase isozyme conversion aminopeptidase	NA	NA	NA	NA
WP_000063172.1\|1180514_1180808_-	type I-E CRISPR-associated endoribonuclease Cas2	NA	NA	NA	NA
WP_001067858.1\|1180930_1181635_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_012477590.1\|1181668_1182589_-\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	2.7e-175	100.0
WP_000557454.1\|1183803_1184664_+	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA
WP_000587837.1\|1184676_1185219_+	AAA family ATPase	NA	NA	NA	NA
WP_000951934.1\|1185700_1185892_-	hypothetical protein	NA	NA	NA	NA
WP_001330846.1\|1185897_1186143_+	hypothetical protein	NA	NA	NA	NA
WP_060579135.1\|1186193_1187321_+	DUF3883 domain-containing protein	NA	NA	NA	NA
WP_001067855.1\|1187357_1188062_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_3

1339760 : 1381526

Salmonella_phage(53.33%)

holin,tail,integrase,head,terminase

attL 1339498:1339515|attR 1381734:1381751

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1339498:1339515	attL	NA	NA	NA	NA
WP_001138334.1\|1339760_1341158_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_001291429.1\|1341154_1341355_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_001551511.1\|1341351_1342746_-	DEAD/DEAH box helicase	Q3LZN8	Bacteriophage	1.0e-210	73.5
WP_001551510.1\|1342808_1343726_-	hypothetical protein	NA	NA	NA	NA
WP_001551509.1\|1343741_1344026_-	VRR-NUC domain-containing protein	B6SD64	Bacteriophage	8.3e-27	68.2
WP_001551508.1\|1344025_1344220_-	hypothetical protein	NA	NA	NA	NA
WP_001551506.1\|1344455_1345217_-	nucleotide-binding protein	NA	NA	NA	NA
WP_001551504.1\|1345281_1347345_-	hypothetical protein	Q775A3	Bordetella_phage	6.7e-275	67.7
WP_000551014.1\|1347391_1348021_+	hypothetical protein	NA	NA	NA	NA
WP_000769005.1\|1348073_1348622_-	DUF2815 family protein	Q775A5	Bordetella_phage	2.1e-66	65.9
WP_001551502.1\|1348637_1349939_-	DUF2800 domain-containing protein	B6SCX9	Bacteriophage	5.2e-132	55.5
WP_001551501.1\|1349941_1350844_-	hypothetical protein	Q3LZP9	Bacteriophage	6.1e-07	54.4
WP_001551500.1\|1351214_1351784_+	hypothetical protein	K7P861	Enterobacteria_phage	3.2e-38	52.7
WP_001551499.1\|1352159_1352834_-	helix-turn-helix transcriptional regulator	B6SCU0	Bacteriophage	1.8e-59	51.1
WP_000016208.1\|1352975_1353176_+	transcriptional regulator	K7RWG7	Bacteriophage	1.0e-07	50.0
WP_001551498.1\|1353179_1355441_+	bifunctional DNA primase/polymerase	NA	NA	NA	NA
WP_000034494.1\|1355756_1356047_+	hypothetical protein	NA	NA	NA	NA
WP_001551497.1\|1356072_1356495_+	hypothetical protein	Q8W638	Enterobacteria_phage	8.0e-42	65.0
WP_000781776.1\|1357027_1357369_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	2.8e-53	91.9
WP_001194119.1\|1357372_1357849_+	glycoside hydrolase family protein	Q8SBE0	Shigella_phage	2.1e-86	96.2
WP_001551496.1\|1357832_1358357_+	hypothetical protein	K7P6W1	Enterobacteria_phage	2.6e-42	67.7
WP_000162796.1\|1358418_1358991_+\|terminase	terminase small subunit	A0A2H4J480	uncultured_Caudovirales_phage	1.4e-60	69.6
WP_001551495.1\|1358993_1360616_+	hypothetical protein	A0A0M5M1R6	Salmonella_phage	0.0e+00	95.6
WP_001551494.1\|1360615_1362082_+	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	6.0e-262	92.0
WP_136759112.1\|1361972_1362707_+\|head	phage head morphogenesis protein	A0A0M4REK0	Salmonella_phage	5.2e-97	85.1
WP_001551492.1\|1362721_1363942_+	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	9.3e-200	88.0
WP_001066732.1\|1363945_1364452_+	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	3.7e-70	79.9
WP_001551491.1\|1364463_1365405_+	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	1.6e-154	86.6
WP_001107515.1\|1365446_1365668_+	hypothetical protein	A0A0M4RTX5	Salmonella_phage	7.7e-12	68.6
WP_001551489.1\|1365633_1366041_+	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	1.5e-69	94.8
WP_001551487.1\|1366037_1366592_+	hypothetical protein	A0A0M4S631	Salmonella_phage	7.4e-80	83.7
WP_001551486.1\|1366578_1366968_+	hypothetical protein	A0A0M3ULK0	Salmonella_phage	3.3e-66	95.3
WP_001349562.1\|1366942_1367506_+	hypothetical protein	A0A0M4R331	Salmonella_phage	3.4e-80	76.3
WP_001551485.1\|1367509_1368655_+	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	5.2e-160	73.5
WP_000109249.1\|1368665_1369106_+	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	7.0e-57	75.3
WP_000393954.1\|1369109_1369562_+	hypothetical protein	A0A0M4S6U8	Salmonella_phage	4.7e-56	72.7
WP_023141050.1\|1369573_1369750_+	hypothetical protein	A0A2H4J1A2	uncultured_Caudovirales_phage	1.6e-12	70.0
WP_001551484.1\|1369739_1371725_+	hypothetical protein	A0A0M4REK7	Salmonella_phage	3.8e-174	53.3
WP_001298404.1\|1371724_1372312_+	hypothetical protein	A0A0M3ULD5	Salmonella_phage	3.4e-83	88.0
WP_000155119.1\|1372311_1372614_+	hypothetical protein	A0A0M4R5B7	Salmonella_phage	2.2e-49	92.0
WP_072201605.1\|1372616_1373255_+	hypothetical protein	A0A0M4QX01	Salmonella_phage	1.3e-96	87.3
WP_072201604.1\|1373261_1373681_+	hypothetical protein	A0A0M4QX01	Salmonella_phage	4.6e-50	72.9
WP_001551482.1\|1373680_1374016_+	hypothetical protein	A0A0M4RTY3	Salmonella_phage	1.7e-23	71.2
WP_001551481.1\|1374012_1374525_+	hypothetical protein	NA	NA	NA	NA
WP_001551480.1\|1374585_1375338_+	hypothetical protein	A0A0M5M1K7	Salmonella_phage	8.5e-87	65.5
WP_001270631.1\|1375337_1375691_+	hypothetical protein	A0A0M4R339	Salmonella_phage	1.5e-54	88.9
WP_001551479.1\|1375690_1376890_+	hypothetical protein	A0A0M4RD32	Salmonella_phage	4.9e-185	83.6
WP_000049943.1\|1376886_1377567_+	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	1.5e-103	78.8
WP_001551478.1\|1377566_1378361_+	hypothetical protein	K7PH60	Enterobacterial_phage	6.9e-79	91.0
WP_024192484.1\|1378360_1378954_+\|tail	phage tail protein	Q9MCR5	Enterobacteria_phage	7.0e-60	64.9
WP_001174919.1\|1378925_1379366_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	1.5e-51	66.7
WP_077634188.1\|1379368_1379767_-\|tail	phage tail protein	A0A0F7LBW5	Escherichia_phage	8.1e-12	37.3
WP_000904955.1\|1379793_1380108_+	recombinase family protein	A0A1S6L009	Salmonella_phage	1.6e-39	89.9
WP_001039127.1\|1380112_1380958_-	hypothetical protein	NA	NA	NA	NA
WP_001253100.1\|1381259_1381526_-	hypothetical protein	A0A0M3ULK3	Salmonella_phage	2.7e-35	83.0
1381734:1381751	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1595207 : 1634176

Enterobacteria_phage(50.0%)

holin,portal,head,terminase,protease,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001551412.1\|1595207_1596641_-	glycoside hydrolase family 32 protein	F8WPR5	Bacillus_phage	5.3e-29	25.0
WP_001551411.1\|1596856_1597780_+	aminoimidazole riboside kinase	NA	NA	NA	NA
WP_001197021.1\|1597841_1599089_+	MFS transporter	NA	NA	NA	NA
WP_001316510.1\|1599168_1599321_-	hypothetical protein	NA	NA	NA	NA
WP_001163428.1\|1599618_1599819_-	response regulator inhibitor TorI	K7P7V0	Enterobacteria_phage	2.4e-33	100.0
WP_000545716.1\|1599876_1600044_-	hypothetical protein	K7P728	Enterobacteria_phage	9.2e-26	92.7
WP_029701309.1\|1600115_1600400_-	RNA-binding protein	A0A2D1GLL3	Escherichia_phage	9.4e-47	94.7
WP_029701304.1\|1600392_1601184_-	DUF551 domain-containing protein	A0A0H4IU61	Shigella_phage	1.0e-58	51.8
WP_000951706.1\|1601180_1601390_-	hypothetical protein	A0A077SL56	Escherichia_phage	4.2e-36	100.0
WP_029701302.1\|1601391_1602084_-	ead/Ea22-like family protein	A0A088CC42	Shigella_phage	1.2e-82	55.4
WP_029701301.1\|1602070_1602325_-	hypothetical protein	A0A1V0E5L1	Salmonella_phage	3.2e-38	95.2
WP_032153684.1\|1602321_1602489_-	DUF2737 family protein	Q716F2	Shigella_phage	5.0e-24	98.2
WP_029701300.1\|1602485_1602767_-	hypothetical protein	K7P7M4	Enterobacteria_phage	2.8e-43	96.8
WP_000753555.1\|1602783_1603098_-	hypothetical protein	K7PLT4	Enterobacteria_phage	1.2e-50	100.0
WP_032153683.1\|1603109_1603592_-	siphovirus Gp157 family protein	K7P6T5	Enterobacteria_phage	6.1e-78	97.5
WP_060579119.1\|1603575_1604487_-	DNA recombinase	K7PKG9	Enterobacteria_phage	4.1e-168	98.3
WP_000604111.1\|1604483_1604792_-	hypothetical protein	K7PJM4	Enterobacteria_phage	1.1e-53	100.0
WP_001243355.1\|1604876_1605029_-	host cell division inhibitory peptide Kil	A5VWA5	Enterobacteria_phage	4.7e-21	100.0
WP_000638547.1\|1605013_1605145_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	A5VWA4	Enterobacteria_phage	1.4e-16	100.0
WP_060579118.1\|1605169_1606138_-	hypothetical protein	K7P7J7	Enterobacteria_phage	7.7e-56	99.4
WP_000167595.1\|1606281_1606752_-	hypothetical protein	A0A1I9LJN4	Stx_converting_phage	3.7e-88	100.0
WP_072201588.1\|1606760_1607138_-	antitermination protein	A4KWR0	Enterobacteria_phage	3.1e-53	99.1
WP_001519589.1\|1607483_1608179_-	LexA family transcriptional regulator	A0A0N7BTS4	Escherichia_phage	1.3e-129	96.5
WP_000067728.1\|1608254_1608470_+	helix-turn-helix transcriptional regulator	A0A0N7C2U7	Escherichia_phage	8.2e-35	98.6
WP_000251073.1\|1608589_1608883_+	hypothetical protein	K7P6Y2	Enterobacteria_phage	2.8e-46	100.0
WP_060579117.1\|1609063_1609954_+	hypothetical protein	K7PH45	Enterobacterial_phage	1.9e-157	98.6
WP_029701292.1\|1609943_1611380_+	AAA family ATPase	A0A220NRL4	Escherichia_phage	3.3e-273	99.2
WP_029701290.1\|1611455_1611662_+	hypothetical protein	K7P7Y0	Enterobacteria_phage	1.5e-30	95.6
WP_029701287.1\|1611770_1612109_+	hypothetical protein	A0A2I6PIG0	Escherichia_phage	2.3e-31	67.0
WP_029701286.1\|1612111_1612522_+	recombination protein NinB	K7PJW4	Enterobacteria_phage	7.2e-72	99.3
WP_001254255.1\|1612518_1612695_+	NinE family protein	A5VW90	Enterobacteria_phage	4.6e-28	100.0
WP_025748956.1\|1612697_1613051_+	DUF2591 domain-containing protein	K7PH48	Enterobacterial_phage	4.5e-38	73.0
WP_000950943.1\|1613050_1613227_+	protein ninF	A0A220NRM2	Escherichia_phage	2.5e-26	98.3
WP_001286917.1\|1613219_1613432_+	hypothetical protein	K7PK10	Enterobacteria_phage	1.6e-35	100.0
WP_025748957.1\|1613424_1613715_+	DUF1364 domain-containing protein	A0A192Y6R9	Salmonella_phage	1.9e-50	97.9
WP_000006226.1\|1613711_1614074_+	RusA family crossover junction endodeoxyribonuclease	K7P6I9	Enterobacteria_phage	3.5e-62	99.2
WP_000994516.1\|1614070_1614259_+	protein ninH	A5VW84	Enterobacteria_phage	5.5e-27	100.0
WP_021530015.1\|1614255_1614774_+	DUF1133 family protein	A5VW83	Enterobacteria_phage	6.5e-94	98.3
WP_000783734.1\|1615283_1615607_+\|holin	phage holin, lambda family	G5DA93	Enterobacteria_phage	1.3e-52	100.0
WP_000229390.1\|1615590_1616067_+	glycoside hydrolase family protein	G5DA94	Enterobacteria_phage	9.8e-89	100.0
WP_029701281.1\|1616063_1616531_+\|lysis	lysis protein	A0A291AWW3	Escherichia_phage	6.7e-74	95.5
WP_001139680.1\|1616518_1616671_+	hypothetical protein	K7PKL2	Enterobacteria_phage	1.2e-21	100.0
WP_029701280.1\|1616910_1617249_+	hypothetical protein	A0A1W6DXZ5	Salmonella_phage	2.1e-48	88.3
WP_000807788.1\|1617352_1617595_+	DUF2560 family protein	A5VW77	Enterobacteria_phage	1.3e-36	100.0
WP_021566250.1\|1617597_1618038_+	hypothetical protein	C7U0W1	Enterobacteria_phage	3.5e-80	100.0
WP_060579116.1\|1618034_1619447_+\|terminase	PBSX family phage terminase large subunit	Q716H3	Shigella_phage	5.8e-278	99.8
WP_000852333.1\|1619449_1621576_+\|portal	portal protein p19	Q9AYZ9	Salmonella_phage	0.0e+00	99.6
WP_000426735.1\|1621589_1622474_+	hypothetical protein	Q716H1	Shigella_phage	8.1e-145	99.7
WP_060579115.1\|1622485_1623757_+\|head	head protein	Q9AYZ7	Salmonella_phage	7.3e-240	99.5
WP_060579114.1\|1623799_1623985_+	hypothetical protein	Q716G9	Shigella_phage	7.8e-26	98.4
WP_000246750.1\|1623959_1624442_+	packaged DNA stabilization protein p27	Q716G8	Shigella_phage	3.8e-88	100.0
WP_060579113.1\|1624450_1625869_+	hypothetical protein	Q716G7	Shigella_phage	6.6e-274	98.7
WP_021529423.1\|1625871_1626366_+	hypothetical protein	A0A1U9HWQ1	Salmonella_phage	5.1e-32	46.0
WP_029701273.1\|1626365_1627067_+	hypothetical protein	A5VW68	Enterobacteria_phage	3.9e-118	98.3
WP_029701271.1\|1627066_1627522_+	DUF2824 family protein	A5VW67	Enterobacteria_phage	5.2e-87	99.3
WP_029701269.1\|1627524_1628217_+	hypothetical protein	G5DA80	Enterobacteria_phage	3.5e-111	99.1
WP_029701268.1\|1628226_1629615_+	DNA transfer protein	A0A220NR03	Salmonella_phage	8.2e-152	65.1
WP_029701266.1\|1629614_1631612_+	hypothetical protein	Q716G2	Shigella_phage	0.0e+00	98.3
WP_029701265.1\|1631776_1634176_+\|head	phage head protein	A5VW57	Enterobacteria_phage	3.0e-77	90.6

DBSCAN-SWA_5

1883878 : 1893321

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569343.1\|1883878_1884805_+	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	1.3e-23	30.8
WP_000783134.1\|1884809_1885541_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|1885521_1885629_-	protein YohO	NA	NA	NA	NA
WP_001240398.1\|1885688_1886420_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	2.8e-111	99.0
WP_001295431.1\|1886641_1888327_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_001308766.1\|1888323_1889043_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001551352.1\|1889089_1889560_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	5.2e-82	99.4
WP_001295429.1\|1889601_1890063_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
WP_001551351.1\|1890187_1892188_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.7
WP_001551350.1\|1892184_1893321_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	5.0e-163	97.4

DBSCAN-SWA_6

1987156 : 1994891

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001116045.1\|1987156_1988551_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	2.4e-18	31.9
WP_000183029.1\|1988725_1989619_+	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	1.3e-46	42.4
WP_000699453.1\|1989991_1991077_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.6e-100	53.6
WP_001023648.1\|1991076_1991976_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	8.2e-28	34.6
WP_000857507.1\|1992034_1992910_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	8.6e-107	64.1
WP_032139969.1\|1992927_1993338_+	WxcM-like domain-containing protein	NA	NA	NA	NA
WP_001332228.1\|1993324_1993792_+	N-acetyltransferase	NA	NA	NA	NA
WP_001033086.1\|1993784_1994891_+	DegT/DnrJ/EryC1/StrS family aminotransferase	E5ES42	Bathycoccus_sp._RCC1105_virus	5.9e-44	32.6

DBSCAN-SWA_7

2344116 : 2387784

Enterobacteria_phage(58.49%)

portal,tail,capsid,integrase,head,terminase,lysis

attL 2341512:2341525|attR 2361326:2361339

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2341512:2341525	attL	NA	NA	NA	NA
WP_001196928.1\|2344116_2345325_+\|integrase	site-specific integrase	I6R9B6	Salmonella_phage	4.7e-180	74.9
WP_001354056.1\|2345282_2345513_-	hypothetical protein	A0A1P8DTG1	Proteus_phage	2.9e-14	55.7
WP_000488401.1\|2345603_2345882_-	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	1.4e-47	96.7
WP_000763364.1\|2345929_2346148_-	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	1.8e-34	95.8
WP_001386642.1\|2346246_2346528_-	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	5.5e-47	98.9
WP_000548531.1\|2346538_2346730_-	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	7.3e-27	100.0
WP_000682318.1\|2346702_2346885_-	DUF1317 domain-containing protein	A0A0N7CHV0	Escherichia_phage	1.3e-28	98.3
WP_000186804.1\|2346881_2347562_-	YqaJ viral recombinase family protein	A0A0N6WET1	Escherichia_phage	1.3e-131	98.7
WP_000100847.1\|2347558_2348344_-	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000995443.1\|2348349_2348646_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	4.7e-49	99.0
WP_023148105.1\|2348721_2349012_-	hypothetical protein	K7P6H3	Enterobacteria_phage	5.0e-27	85.1
WP_000858975.1\|2349523_2350213_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	2.8e-92	75.0
WP_001067458.1\|2350317_2350548_+	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
WP_001182891.1\|2350617_2351157_+	hypothetical protein	K7PJT7	Enterobacteria_phage	6.8e-62	67.6
WP_001551200.1\|2351243_2352173_+	replication protein	A0A0M5M7Y1	Salmonella_phage	8.0e-111	64.1
WP_000788813.1\|2352169_2352871_+	hypothetical protein	M1FJ72	Enterobacteria_phage	3.8e-129	99.1
WP_000145915.1\|2352867_2353170_+	protein ren	A0A0N6WES4	Escherichia_phage	1.1e-42	95.7
WP_001070450.1\|2353237_2353570_+	SMR family multidrug efflux protein EmrE	NA	NA	NA	NA
WP_001299444.1\|2353617_2353767_+	hypothetical protein	NA	NA	NA	NA
WP_001551199.1\|2353824_2355351_+	recombinase family protein	Q3HQV4	Burkholderia_phage	1.2e-31	31.1
WP_001445652.1\|2355815_2356367_+	Raf kinase inhibitor-like protein YbcL	NA	NA	NA	NA
WP_000881075.1\|2356376_2357174_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001303586.1\|2357290_2357392_+	hypothetical protein	NA	NA	NA	NA
WP_001054342.1\|2357388_2357844_+	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	5.4e-60	66.9
WP_000224916.1\|2357843_2358014_+	hypothetical protein	K7P7K0	Enterobacteria_phage	1.5e-12	67.9
WP_000774479.1\|2358006_2358297_+	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	2.3e-48	95.8
WP_001099655.1\|2358293_2358656_+	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	7.3e-60	97.4
WP_000971071.1\|2358652_2358793_+	YlcG family protein	K7PHH3	Enterobacteria_phage	2.5e-08	69.8
WP_001204777.1\|2358878_2359256_+	antitermination protein	Q777W5	Enterobacteria_phage	7.3e-55	84.2
WP_000780581.1\|2359411_2359936_-	lipocalin family protein	A0A1W6JNX6	Morganella_phage	1.1e-48	54.1
WP_001563769.1\|2360128_2361088_+	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA
WP_000839582.1\|2362358_2362574_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.2e-33	98.6
2361326:2361339	attR	NA	NA	NA	NA
WP_001135296.1\|2362573_2363071_+	lysozyme	M1FJA0	Enterobacteria_phage	1.6e-89	97.0
WP_001228695.1\|2363287_2363470_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_000738421.1\|2363560_2363854_-	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	5.9e-44	90.7
WP_000453587.1\|2364522_2365068_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	1.4e-94	98.9
WP_001027295.1\|2365042_2366968_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.7
WP_000198149.1\|2366964_2367171_+\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001563772.1\|2367167_2368769_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	4.2e-309	99.1
WP_001563773.1\|2368749_2370069_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	4.8e-234	98.9
WP_001563774.1\|2370078_2370411_+\|head	head decoration protein	C6ZCY1	Enterobacteria_phage	2.5e-54	99.1
WP_000063277.1\|2370466_2371492_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	2.7e-192	99.7
WP_000158862.1\|2371533_2371932_+	DNA-packaging protein FI	A0A0K2FIR1	Enterobacteria_phage	1.2e-50	83.3
WP_000752974.1\|2371943_2372297_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	2.9e-61	97.4
WP_000975083.1\|2372308_2372887_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.7e-79	99.0
WP_000683138.1\|2372883_2373279_+\|tail	tail protein	A0A0K2FIF4	Enterobacteria_phage	5.0e-70	99.2
WP_001563775.1\|2373286_2374027_+\|tail	phage tail protein	A0A2I6TC77	Escherichia_phage	2.5e-131	98.8
WP_001563776.1\|2374042_2374456_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	5.4e-67	93.6
WP_000459472.1\|2374437_2374872_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	3.8e-63	98.3
WP_001563777.1\|2374864_2377444_+\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	88.1
WP_001563778.1\|2377440_2377770_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	1.4e-57	98.2
WP_001563779.1\|2377769_2378468_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	4.7e-132	98.3
WP_000194780.1\|2378472_2379216_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.5e-147	96.8
WP_071591506.1\|2379152_2379785_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	8.5e-96	99.0
WP_001563780.1\|2379845_2383325_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	89.9
WP_001563781.1\|2383392_2383992_+	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	8.6e-98	88.4
WP_021561299.1\|2384056_2386456_+\|tail	phage tail fiber protein	A0A0E3M194	Enterobacteria_phage	2.9e-136	57.7
WP_001550853.1\|2386452_2386734_+	hypothetical protein	A0A1X7QHA1	Escherichia_phage	1.2e-17	48.9
WP_001550854.1\|2386743_2387784_+\|tail	tail fiber domain-containing protein	A0A0E3M4A9	Enterobacteria_phage	1.7e-125	67.9

DBSCAN-SWA_8

2514479 : 2527604

uncultured_Caudovirales_phage(28.57%)

capsid,integrase,head,terminase,protease

attL 2501235:2501249|attR 2525039:2525053

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2501235:2501249	attL	NA	NA	NA	NA
WP_023063565.1\|2514479_2515718_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	4.0e-126	52.7
WP_001302637.1\|2516135_2516345_+	AlpA family phage regulatory protein	A0A2H4JB58	uncultured_Caudovirales_phage	1.8e-15	66.1
WP_032300391.1\|2516355_2517171_+	hypothetical protein	NA	NA	NA	NA
WP_075827259.1\|2517103_2517394_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_001113142.1\|2517386_2517707_+	hypothetical protein	NA	NA	NA	NA
WP_023063568.1\|2517713_2518013_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_023063569.1\|2518009_2519827_+	DNA primase phage-associated	Q7M2A8	Enterobacteria_phage	1.1e-127	47.9
WP_024210327.1\|2520114_2520360_+	hypothetical protein	NA	NA	NA	NA
WP_000126638.1\|2520356_2520779_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_126856877.1\|2520744_2520942_+	hypothetical protein	NA	NA	NA	NA
WP_001281836.1\|2521052_2522093_+\|capsid	phage capsid protein	C6ZCY2	Enterobacteria_phage	6.7e-66	42.7
WP_000190775.1\|2522102_2522444_+\|head	head decoration protein	NA	NA	NA	NA
WP_000572593.1\|2522453_2522798_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_001390169.1\|2522865_2523000_+	hypothetical protein	NA	NA	NA	NA
WP_023063570.1\|2522999_2523542_+\|terminase	terminase small subunit	O64316	Escherichia_phage	2.9e-36	48.1
WP_000133431.1\|2523615_2523897_+	hypothetical protein	NA	NA	NA	NA
WP_001334712.1\|2524021_2524216_-	hypothetical protein	NA	NA	NA	NA
WP_000520781.1\|2524976_2525297_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4
2525039:2525053	attR	NA	NA	NA	NA
WP_000934041.1\|2525327_2527604_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.9e-166	42.5

DBSCAN-SWA_9

2773040 : 2825185

Escherichia_phage(36.84%)

holin,portal,tail,capsid,integrase,head,terminase,lysis

attL 2766495:2766509|attR 2793636:2793650

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2766495:2766509	attL	NA	NA	NA	NA
WP_000074983.1\|2773040_2774159_-\|integrase	tyrosine-type recombinase/integrase	Q77Z04	Phage_21	7.7e-84	44.2
WP_000003742.1\|2774127_2774397_-	excisionase	NA	NA	NA	NA
WP_000102155.1\|2774458_2776915_-	exonuclease	V5UQJ3	Shigella_phage	3.3e-103	42.6
WP_001093951.1\|2776992_2777196_-	DUF1482 family protein	NA	NA	NA	NA
WP_000450218.1\|2777192_2777381_-	cell division inhibitor	NA	NA	NA	NA
WP_000935596.1\|2777391_2778246_-	hypothetical protein	A0A0P0ZE80	Stx2-converting_phage	3.6e-65	63.2
WP_000394557.1\|2778776_2779151_-	hypothetical protein	NA	NA	NA	NA
WP_000379564.1\|2779162_2779315_-	DUF1391 domain-containing protein	NA	NA	NA	NA
WP_000787428.1\|2779521_2779929_-	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	9.8e-29	49.6
WP_000912294.1\|2780005_2780233_+	transcriptional regulator	NA	NA	NA	NA
WP_000705383.1\|2780216_2780768_+	hypothetical protein	NA	NA	NA	NA
WP_000020541.1\|2780739_2781780_+	DNA-binding protein	A0A0U2RT81	Escherichia_phage	1.0e-90	87.2
WP_001403041.1\|2781811_2782234_+	replication protein	A0A0U2JGJ0	Escherichia_phage	2.8e-71	89.3
WP_000450706.1\|2782267_2783038_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	1.1e-86	68.4
WP_001141099.1\|2783053_2783446_+	DUF977 family protein	A0A088CBK9	Shigella_phage	1.5e-39	63.3
WP_001266130.1\|2783442_2783739_+	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	1.2e-47	95.8
WP_001209475.1\|2783735_2784197_+	ead/Ea22-like family protein	Q8VNQ2	Enterobacteria_phage	2.6e-38	94.0
WP_000403791.1\|2784174_2784531_+	hypothetical protein	A0A2R2Z307	Escherichia_phage	1.1e-57	98.3
WP_000137947.1\|2784626_2785034_+	hypothetical protein	A0A0N7KZJ2	Stx2-converting_phage	6.1e-23	60.4
WP_001229301.1\|2785035_2785401_+	HNH endonuclease	A0A2R2Z2X9	Escherichia_phage	1.9e-68	99.2
WP_000208092.1\|2785397_2786384_+	hypothetical protein	Q1MVF7	Enterobacteria_phage	1.8e-44	41.5
WP_000786207.1\|2786504_2786684_+	hypothetical protein	NA	NA	NA	NA
WP_000813254.1\|2786942_2787098_+	type I toxin-antitoxin system toxin HokD	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
WP_001309416.1\|2787314_2787566_+	hypothetical protein	NA	NA	NA	NA
WP_001309417.1\|2787632_2787911_+	hypothetical protein	I6PCV7	Cronobacter_phage	6.3e-11	45.3
WP_001265256.1\|2787912_2788971_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.8e-90	48.3
WP_000140038.1\|2788971_2789340_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	2.4e-34	62.8
WP_001064909.1\|2789332_2790022_+	antiterminator	I6PDF8	Cronobacter_phage	7.1e-56	48.1
WP_001309418.1\|2790234_2790432_+	hypothetical protein	S5MQK8	Escherichia_phage	1.7e-26	93.8
WP_000871291.1\|2790801_2791137_-	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	5.2e-44	74.8
WP_001309419.1\|2791382_2791586_+	DUF1737 domain-containing protein	H6WZJ9	Escherichia_phage	2.7e-27	96.8
WP_000284506.1\|2791893_2792109_+\|holin	holin	Q9ZWW2	Enterobacteria_phage	6.9e-34	100.0
WP_001037013.1\|2792113_2793004_+	YdfR family protein	Q08JA0	Stx2-converting_phage	1.2e-108	70.9
WP_001092866.1\|2793040_2793574_+	lysozyme	Q6H9V6	Enterobacteria_phage	6.7e-102	97.2
WP_001322430.1\|2793516_2793732_-	hypothetical protein	Q8VNN9	Enterobacteria_phage	1.1e-23	90.2
2793636:2793650	attR	NA	NA	NA	NA
WP_001446668.1\|2793730_2793913_+	hypothetical protein	NA	NA	NA	NA
WP_001280932.1\|2793927_2794059_+	hypothetical protein	A0A0P0ZG36	Escherichia_phage	2.6e-07	79.1
WP_032142285.1\|2794061_2794529_+\|lysis	lysis protein	Q6H9V3	Enterobacteria_phage	6.7e-66	84.4
WP_000830178.1\|2794839_2795166_+	TonB family protein	H6WZK5	Escherichia_phage	3.7e-39	72.2
WP_001322427.1\|2795288_2795642_-	hypothetical protein	NA	NA	NA	NA
WP_012602757.1\|2795529_2795850_-	hypothetical protein	NA	NA	NA	NA
WP_000235436.1\|2796124_2796634_+\|terminase	terminase	A0A1I9KFT4	Aeromonas_phage	1.6e-12	32.7
WP_001309424.1\|2796605_2798534_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	1.4e-261	66.4
WP_000258993.1\|2798517_2798724_+\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	3.0e-10	55.4
WP_001322425.1\|2798720_2800313_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	4.9e-185	61.1
WP_001253887.1\|2800302_2801751_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	9.9e-100	53.1
WP_000256814.1\|2801787_2802135_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	6.8e-23	59.1
WP_000522603.1\|2802192_2803221_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.4e-116	62.2
WP_000201530.1\|2803272_2803647_+	hypothetical protein	NA	NA	NA	NA
WP_001204533.1\|2803639_2803993_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	1.9e-41	70.1
WP_000974996.1\|2804008_2804542_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	2.5e-56	64.6
WP_000683079.1\|2804538_2804934_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	1.5e-58	82.4
WP_000235048.1\|2804941_2805691_+\|tail	phage tail protein	Q687F6	Enterobacteria_phage	2.7e-125	93.8
WP_001309426.1\|2805709_2806141_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	7.4e-43	68.8
WP_000533401.1\|2806167_2806581_+\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	4.6e-42	82.8
WP_000082417.1\|2806561_2809123_+\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	87.5
WP_000847291.1\|2809119_2809449_+\|tail	phage tail protein	Q687F2	Enterobacteria_phage	2.1e-58	99.1
WP_001309428.1\|2809448_2810147_+\|tail	phage minor tail protein L	H6WZM3	Escherichia_phage	3.2e-128	96.6
WP_000194723.1\|2810157_2810901_+\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	5.0e-148	98.0
WP_122991350.1\|2810846_2811479_+\|tail	tail assembly protein	A0A0P0ZC16	Stx2-converting_phage	1.2e-102	96.7
WP_000559722.1\|2811500_2811842_+	hypothetical protein	NA	NA	NA	NA
WP_000514742.1\|2811822_2815515_+	DUF1983 domain-containing protein	A0A0P0ZCI5	Stx2-converting_phage	0.0e+00	85.7
WP_001233148.1\|2815582_2816182_+	Ail/Lom family protein	H6WZM8	Escherichia_phage	7.7e-107	94.0
WP_000216486.1\|2816333_2819360_+	membrane protein	A0A0K2FIZ6	Escherichia_phage	1.4e-55	54.6
WP_138585047.1\|2819359_2819935_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.2e-101	95.3
WP_000086527.1\|2820032_2820623_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8
WP_000836769.1\|2821002_2821236_-	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	6.4e-33	88.3
WP_120795384.1\|2821304_2821418_-	Rac prophage; protein YnaM	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
WP_001217539.1\|2821844_2822093_-	DinI family protein	A5LH55	Enterobacteria_phage	1.1e-38	100.0
WP_000202563.1\|2822312_2823899_+	peptide chain release factor 3	D0R0F5	Streptococcus_phage	2.4e-30	25.2
WP_001295748.1\|2824291_2824897_+	molecular chaperone OsmY	NA	NA	NA	NA
WP_000490275.1\|2825023_2825185_+	DUF1328 domain-containing protein	A0A0N7CBR2	Salmonella_phage	1.8e-10	64.2

DBSCAN-SWA_10

3056277 : 3129279

Emiliania_huxleyi_virus(11.11%)

protease,tRNA,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001520521.1\|3056277_3057630_+\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_001240896.1\|3057659_3060092_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_000758956.1\|3060213_3060699_+	molecular chaperone Skp	NA	NA	NA	NA
WP_001139287.1\|3060702_3061728_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_000210739.1\|3061832_3062288_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_000565966.1\|3062291_3063080_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_001550626.1\|3063079_3064228_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_001550627.1\|3064224_3064821_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	7.9e-27	40.0
WP_001294781.1\|3064857_3068340_+	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	2.2e-209	37.0
WP_000055748.1\|3068352_3069312_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_001020973.1\|3069409_3071551_+	lysine decarboxylase LdcC	NA	NA	NA	NA
WP_000901098.1\|3071607_3071997_+	VOC family protein	NA	NA	NA	NA
WP_001550628.1\|3072061_3073360_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_000062311.1\|3073408_3073669_-	Rho-binding antiterminator	NA	NA	NA	NA
WP_000417058.1\|3073655_3073856_-	YaeP family protein	NA	NA	NA	NA
WP_001185287.1\|3074021_3074567_+	YaeQ family protein	NA	NA	NA	NA
WP_000635534.1\|3074563_3074986_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_000239188.1\|3074999_3075710_+	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA
WP_001550629.1\|3075740_3076565_-	YaeF family permuted papain-like enzyme	NA	NA	NA	NA
WP_001260708.1\|3076617_3078336_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_000094022.1\|3078446_3079154_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_001202329.1\|3079150_3079555_-	Rcs stress response system protein RcsF	NA	NA	NA	NA
WP_000874224.1\|3079672_3080488_-	methionine ABC transporter substrate-binding lipoprotein MetQ	NA	NA	NA	NA
WP_001294600.1\|3080527_3081181_-	methionine ABC transporter permease MetI	NA	NA	NA	NA
WP_000593994.1\|3081173_3082205_-	methionine ABC transporter ATP-binding protein MetN	G9BWD6	Planktothrix_phage	7.2e-36	40.2
WP_001140178.1\|3082391_3082964_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_000997053.1\|3088715_3089519_+	2,5-didehydrogluconate reductase DkgB	A0A1V0SDE7	Indivirus	5.4e-39	36.2
WP_000648583.1\|3089515_3090430_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001230983.1\|3090670_3091471_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_001550637.1\|3091548_3092319_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000644685.1\|3092365_3093724_-	murein transglycosylase D	A0A2H4J9N7	uncultured_Caudovirales_phage	5.8e-09	36.0
WP_001052732.1\|3093795_3094551_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_001308373.1\|3094584_3095307_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000917883.1\|3095303_3095771_-	ribonuclease HI	J9Q745	Salmonella_phage	1.0e-50	58.7
WP_001308374.1\|3095835_3096567_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	7.6e-40	38.6
WP_001086163.1\|3097105_3097891_+	hypothetical protein	NA	NA	NA	NA
WP_001236629.1\|3098039_3098507_-	hypothetical protein	NA	NA	NA	NA
WP_000908071.1\|3098516_3099431_-	hypothetical protein	NA	NA	NA	NA
WP_000002621.1\|3099474_3099957_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_001563736.1\|3099980_3101333_-	type VI secretion system protein VasL	NA	NA	NA	NA
WP_122989438.1\|3101343_3104778_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_001240537.1\|3104886_3106299_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_001550641.1\|3106303_3107047_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_032179994.1\|3107043_3109863_-	type VI secretion system ATPase TssH	A0A1C3S747	Escherichia_phage	5.9e-80	30.1
WP_001521863.1\|3109871_3110633_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_000246418.1\|3110637_3111969_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_001080149.1\|3111971_3112496_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_001550643.1\|3112492_3113773_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_000348804.1\|3113797_3114880_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_001521865.1\|3114843_3116694_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_001521866.1\|3116697_3117111_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_001550644.1\|3117117_3118593_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_001521869.1\|3118643_3118868_-	hypothetical protein	NA	NA	NA	NA
WP_001550646.1\|3118902_3119403_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_001142958.1\|3120099_3120618_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_001550647.1\|3120827_3122969_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.8e-25	24.8
WP_001077735.1\|3127544_3127922_+	hypothetical protein	NA	NA	NA	NA
WP_024192499.1\|3128142_3129279_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_11

3690372 : 3754477

Enterobacteria_phage(51.56%)

tRNA,transposase,portal,tail,capsid,integrase,head,terminase,protease,lysis

attL 3681552:3681567|attR 3729172:3729187

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3681552:3681567	attL	NA	NA	NA	NA
WP_001550841.1\|3690372_3691443_-\|integrase	tyrosine-type recombinase/integrase	Q9MCR4	Enterobacteria_phage	4.3e-201	99.7
WP_001303849.1\|3691420_3691639_-	excisionase	Q77WA4	Escherichia_phage	3.7e-35	100.0
WP_000545728.1\|3691678_3691846_-	hypothetical protein	A0A0K2FJ46	Enterobacteria_phage	1.3e-27	98.2
WP_071591521.1\|3691778_3691964_+	hypothetical protein	NA	NA	NA	NA
WP_001348592.1\|3692088_3692691_+	hypothetical protein	NA	NA	NA	NA
WP_000763367.1\|3692901_3693123_-	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	2.9e-35	100.0
WP_001386642.1\|3693221_3693503_-	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	5.5e-47	98.9
WP_000548531.1\|3693513_3693705_-	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	7.3e-27	100.0
WP_000682318.1\|3693677_3693860_-	DUF1317 domain-containing protein	A0A0N7CHV0	Escherichia_phage	1.3e-28	98.3
WP_000186804.1\|3693856_3694537_-	YqaJ viral recombinase family protein	A0A0N6WET1	Escherichia_phage	1.3e-131	98.7
WP_001550842.1\|3694533_3695319_-	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	2.4e-148	99.6
WP_001550843.1\|3695324_3695621_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	6.2e-49	99.0
WP_000372937.1\|3695695_3695839_-	host cell division inhibitory peptide Kil	A0A0N7C2U2	Escherichia_phage	1.2e-18	100.0
WP_001198861.1\|3695807_3695972_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q776Q5	Enterobacteria_phage	1.1e-26	100.0
WP_024189690.1\|3696044_3696413_-	DUF2528 family protein	M1FPD2	Enterobacteria_phage	5.0e-64	99.2
WP_001550845.1\|3696595_3696796_-	restriction inhibitor protein ral	K7P7K1	Enterobacteria_phage	1.9e-33	100.0
WP_001550846.1\|3697009_3697591_+	hypothetical protein	K7P6T7	Enterobacteria_phage	4.0e-92	92.2
WP_000216183.1\|3697607_3697916_-	hypothetical protein	A0A075B8K6	Enterobacteria_phage	7.9e-31	70.6
WP_032145726.1\|3697914_3698130_+	hypothetical protein	NA	NA	NA	NA
WP_000076839.1\|3698358_3699258_-	hypothetical protein	NA	NA	NA	NA
WP_000250470.1\|3699387_3700095_-	helix-turn-helix transcriptional regulator	G9L676	Escherichia_phage	2.2e-132	98.7
WP_001180318.1\|3700173_3700401_+	transcriptional regulator	G9L677	Escherichia_phage	7.8e-36	100.0
WP_000438490.1\|3700507_3700807_+	hypothetical protein	A0A0P0ZBJ0	Stx2-converting_phage	2.0e-47	96.0
WP_000185505.1\|3700839_3701739_+	replication protein	A0A0K2FJ31	Enterobacteria_phage	3.8e-174	100.0
WP_001550847.1\|3701735_3702437_+	replication protein P	M1FJ72	Enterobacteria_phage	1.6e-127	98.3
WP_001550848.1\|3702676_3706585_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA
WP_072198841.1\|3706785_3706887_+	hypothetical protein	NA	NA	NA	NA
WP_001053029.1\|3706883_3707339_+	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	3.7e-61	67.5
WP_000224911.1\|3707338_3707509_+	hypothetical protein	K7P7K0	Enterobacteria_phage	9.1e-13	66.0
WP_000774479.1\|3707501_3707792_+	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	2.3e-48	95.8
WP_001099655.1\|3707788_3708151_+	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	7.3e-60	97.4
WP_000971071.1\|3708147_3708288_+	YlcG family protein	K7PHH3	Enterobacteria_phage	2.5e-08	69.8
WP_001204777.1\|3708373_3708751_+	antitermination protein	Q777W5	Enterobacteria_phage	7.3e-55	84.2
WP_000780581.1\|3708906_3709431_-	lipocalin family protein	A0A1W6JNX6	Morganella_phage	1.1e-48	54.1
WP_001563769.1\|3709623_3710583_+	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA
WP_000839582.1\|3711853_3712069_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.2e-33	98.6
WP_001135296.1\|3712068_3712566_+	lysozyme	M1FJA0	Enterobacteria_phage	1.6e-89	97.0
WP_001228695.1\|3712782_3712965_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_000738423.1\|3713055_3713349_-	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	2.0e-44	91.8
WP_001307652.1\|3713711_3713906_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	9.7e-27	96.8
WP_000867489.1\|3714293_3714839_+\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	1.2e-79	83.3
WP_138585052.1\|3714813_3716739_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	98.8
WP_000198149.1\|3716735_3716942_+\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001445654.1\|3716938_3718540_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	3.2e-309	98.7
WP_000123230.1\|3718520_3719840_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	6.9e-233	98.2
WP_001299443.1\|3719849_3720182_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	1.7e-55	100.0
WP_001551189.1\|3720236_3721262_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	7.6e-187	96.8
WP_000158895.1\|3721303_3721699_+	hypothetical protein	A0A2R9YJP4	Escherichia_phage	4.5e-55	93.2
WP_000752996.1\|3721710_3722064_+\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	1.5e-62	99.1
WP_000985116.1\|3722075_3722654_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	7.8e-80	97.9
WP_000683105.1\|3722650_3723046_+\|tail	tail protein	A0A0K2FIF4	Enterobacteria_phage	1.0e-70	100.0
WP_001445656.1\|3723053_3723794_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	4.7e-130	97.6
WP_000479143.1\|3723809_3724232_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	8.2e-71	96.4
WP_000459467.1\|3724213_3724648_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	7.6e-64	99.2
WP_001551188.1\|3724640_3727202_+\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	98.5
WP_000847339.1\|3727198_3727528_+\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	2.8e-58	97.2
WP_001551186.1\|3727527_3728226_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	8.9e-131	97.4
WP_019843054.1\|3728231_3728975_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.2e-149	98.4
WP_000090872.1\|3728911_3729544_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	1.2e-94	97.1
3729172:3729187	attR	NA	NA	NA	NA
WP_019843055.1\|3729604_3733003_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	89.9
WP_001551182.1\|3733070_3733670_+	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	1.0e-98	88.9
WP_094158907.1\|3733734_3736125_+\|tail	phage tail protein	A0A0E3M194	Enterobacteria_phage	9.9e-105	48.5
WP_000654173.1\|3736121_3736403_+	hypothetical protein	A0A1X7QHA1	Escherichia_phage	7.0e-18	50.0
WP_060579084.1\|3736412_3737117_+\|tail	tail fiber domain-containing protein	A0A1X7QGH6	Escherichia_phage	1.2e-58	61.7
WP_001545206.1\|3737127_3737421_+	hypothetical protein	NA	NA	NA	NA
WP_001309429.1\|3737532_3737670_+	hypothetical protein	NA	NA	NA	NA
WP_000240999.1\|3737614_3738283_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000937481.1\|3738339_3738606_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.5e-17	81.8
WP_000799406.1\|3738837_3739701_-	spermidine/putrescine ABC transporter permease PotB	Q6GZ02	Mycoplasma_phage	6.7e-11	28.7
WP_000531594.1\|3739684_3740821_-	spermidine/putrescine ABC transporter ATP-binding protein PotA	Q6GZ03	Mycoplasma_phage	5.5e-29	39.8
WP_000359446.1\|3741070_3742297_+	peptidase T	NA	NA	NA	NA
WP_001295435.1\|3742345_3743467_-	cupin domain-containing protein	NA	NA	NA	NA
WP_000735412.1\|3743542_3745003_-	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
WP_001265481.1\|3745002_3745674_-	two-component system response regulator PhoP	NA	NA	NA	NA
WP_000423742.1\|3745842_3747213_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.2e-107	44.9
WP_001297479.1\|3747216_3747858_-	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_001295972.1\|3747893_3749000_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_000476103.1\|3749053_3749515_-	phosphatase NudJ	NA	NA	NA	NA
WP_000873387.1\|3749524_3750163_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000246191.1\|3750495_3750831_-	DUF1493 family protein	NA	NA	NA	NA
WP_000381622.1\|3750830_3751280_-	hypothetical protein	NA	NA	NA	NA
WP_001522898.1\|3751861_3753112_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	6.5e-23	98.1
WP_000526135.1\|3753307_3753766_+\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	2.9e-13	32.3
WP_000526135.1\|3754018_3754477_+\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	2.9e-13	32.3

DBSCAN-SWA_12

3955805 : 4062349

103

Escherichia_phage(46.43%)

tRNA,transposase,tail,integrase,terminase,lysis

attL 3946701:3946716|attR 3989190:3989205

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3946701:3946716	attL	NA	NA	NA	NA
WP_001314661.1\|3955805_3957038_-	diguanylate cyclase DgcM	A0A127AWB9	Bacillus_phage	3.1e-17	39.5
WP_000387388.1\|3957292_3958276_+	zinc transporter ZntB	NA	NA	NA	NA
WP_001551034.1\|3958753_3960127_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-53	33.1
WP_000662472.1\|3960255_3961191_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	1.7e-145	98.4
WP_001551035.1\|3961242_3962478_-\|integrase	site-specific integrase	A0A0U2JGI6	Escherichia_phage	1.3e-238	98.5
WP_000079604.1\|3962479_3962695_-	excisionase XisR	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
WP_001551036.1\|3962794_3962983_-	DUF1187 family protein	A0A0U2QL97	Escherichia_phage	7.9e-26	95.2
WP_001317028.1\|3962975_3963170_-	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	A0A0U2QQP4	Escherichia_phage	5.8e-32	96.9
WP_001551037.1\|3963226_3964036_-	recombination protein RecT	A0A1P8DTF2	Proteus_phage	4.4e-105	71.1
WP_001551038.1\|3964028_3966680_-	exodeoxyribonuclease VIII	A0A0U2I1R6	Escherichia_phage	0.0e+00	77.6
WP_001314664.1\|3966781_3967057_-	hypothetical protein	A0A0U2QW85	Escherichia_phage	1.3e-40	93.4
WP_001551041.1\|3967131_3967302_-	phage protein	A0A0U2SHB5	Escherichia_phage	9.7e-23	89.3
WP_000560221.1\|3967301_3967523_-	killing protein KilR	A0A0U2RTC4	Escherichia_phage	3.1e-37	98.6
WP_001551042.1\|3967943_3968096_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	6.0e-08	55.3
WP_001551043.1\|3968549_3969026_-	DNA-binding transcriptional repressor RacR	NA	NA	NA	NA
WP_001551044.1\|3969149_3969446_+	toxin YdaS	A0A0R6PH31	Moraxella_phage	1.6e-09	43.5
WP_001551045.1\|3969468_3969891_+	phage protein	A0A0U2RXZ9	Escherichia_phage	5.3e-70	95.7
WP_001551046.1\|3969903_3970761_+	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	3.5e-68	82.6
WP_001551047.1\|3970767_3971514_+	ATP-binding protein	V5UQI5	Shigella_phage	2.4e-110	78.5
WP_001551048.1\|3971536_3972298_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	2.3e-119	93.3
WP_001403739.1\|3972313_3972745_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	4.4e-64	92.7
WP_001551049.1\|3972741_3972963_+	hypothetical protein	NA	NA	NA	NA
WP_000385105.1\|3972938_3974093_+	AAA family ATPase	A0A2H4UTU5	Bodo_saltans_virus	1.9e-13	31.3
WP_001551050.1\|3974067_3976332_+	S8 family peptidase	NA	NA	NA	NA
WP_000940316.1\|3976745_3977345_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	1.6e-107	93.0
WP_001551052.1\|3977344_3977635_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	9.0e-45	85.4
WP_000640136.1\|3977631_3978174_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.4e-75	74.0
WP_000839599.1\|3979455_3979671_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	2.0e-33	98.6
WP_001551053.1\|3979670_3980168_+	lysozyme	A0A1B5FP97	Escherichia_phage	1.4e-90	97.6
WP_001228688.1\|3980384_3980570_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	3.6e-15	96.5
WP_001097895.1\|3980766_3982224_+	Trk system potassium uptake protein TrkG	NA	NA	NA	NA
WP_001291094.1\|3982361_3983153_+	ParB N-terminal domain-containing protein	R4TG31	Halovirus	2.8e-48	40.2
WP_001204037.1\|3983145_3984078_+	hypothetical protein	A0A1B1INP7	uncultured_Mediterranean_phage	1.4e-83	54.9
WP_000126788.1\|3984055_3984265_+	hypothetical protein	NA	NA	NA	NA
WP_001551055.1\|3984268_3985363_+	hypothetical protein	A0A0U2RXW9	Escherichia_phage	1.0e-112	80.2
WP_000625348.1\|3985343_3986645_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	3.6e-149	59.6
WP_001551056.1\|3986647_3988054_+	DUF4055 domain-containing protein	G8C7P4	Escherichia_phage	2.3e-186	69.2
WP_001363932.1\|3988037_3989150_+	hypothetical protein	I6PD76	Cronobacter_phage	7.1e-114	54.5
WP_001551057.1\|3989254_3990019_+	hypothetical protein	G8C7P6	Escherichia_phage	1.8e-79	61.4
3989190:3989205	attR	NA	NA	NA	NA
WP_000918487.1\|3990117_3991257_+	hypothetical protein	G8C7P7	Escherichia_phage	7.4e-159	75.0
WP_000634214.1\|3991479_3991875_+	hypothetical protein	NA	NA	NA	NA
WP_001551058.1\|3991874_3992258_+	hypothetical protein	A0A0P0I456	Acinetobacter_phage	2.2e-14	39.4
WP_001551059.1\|3992258_3992639_+	hypothetical protein	A0A059VF88	Pseudomonas_phage	2.9e-19	44.4
WP_000673077.1\|3992635_3993028_+	hypothetical protein	NA	NA	NA	NA
WP_001551060.1\|3993054_3994017_+	hypothetical protein	A0A059VG08	Pseudomonas_phage	3.8e-55	38.6
WP_122452218.1\|3994167_3994527_+	hypothetical protein	NA	NA	NA	NA
WP_032284309.1\|3994634_3994835_+	hypothetical protein	NA	NA	NA	NA
WP_060579026.1\|3994998_3997497_+\|tail	phage tail tape measure protein	A0A2H4J107	uncultured_Caudovirales_phage	1.7e-86	35.1
WP_077634177.1\|3997500_3998232_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	5.4e-54	48.2
WP_000024051.1\|3998224_3998563_+\|tail	phage tail protein	H6WZM2	Escherichia_phage	4.0e-28	50.0
WP_001152425.1\|3998562_3999261_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	1.9e-128	95.3
WP_032147653.1\|3999266_4000010_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.8e-146	96.3
WP_050436738.1\|3999946_4000555_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	7.1e-100	91.6
WP_001551065.1\|4000615_4004095_+	host specificity protein J	A5LH43	Enterobacteria_phage	0.0e+00	89.5
WP_001228337.1\|4004162_4004762_+	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	1.7e-101	91.5
WP_001551066.1\|4004826_4007202_+\|tail	phage tail fiber protein	A0A1X7QGG5	Escherichia_phage	6.3e-168	69.5
WP_001518417.1\|4007201_4007483_+	hypothetical protein	A0A1X7QHA1	Escherichia_phage	1.4e-18	50.0
WP_001551067.1\|4007492_4008533_+\|tail	tail fiber domain-containing protein	A0A0E3M4A9	Enterobacteria_phage	4.9e-125	67.6
WP_000355602.1\|4008575_4008869_+	hypothetical protein	NA	NA	NA	NA
WP_000968130.1\|4009220_4010078_-	iron/manganese ABC transporter permease subunit SitD	NA	NA	NA	NA
WP_001101728.1\|4010074_4010932_-	iron/manganese ABC transporter permease subunit SitC	NA	NA	NA	NA
WP_000983720.1\|4010928_4011756_-	iron/manganese ABC transporter ATP-binding protein SitB	G9BWD6	Planktothrix_phage	3.8e-11	28.5
WP_000286867.1\|4011755_4012670_-	iron/manganese ABC transporter substrate-binding protein SitA	NA	NA	NA	NA
WP_001295593.1\|4013256_4013691_-	universal stress protein UspF	A0A1W6JNV4	Morganella_phage	1.4e-28	52.8
WP_000837902.1\|4013831_4014965_-	porin OmpN	Q1MVN1	Enterobacteria_phage	4.8e-118	58.8
WP_001551068.1\|4015326_4018851_-	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
WP_001295715.1\|4019124_4019391_+	DUF333 domain-containing protein	NA	NA	NA	NA
WP_001523197.1\|4019387_4019810_-	heat shock protein HslJ	NA	NA	NA	NA
WP_000762229.1\|4019920_4020910_-	D-lactate dehydrogenase	M1I4S0	Paramecium_bursaria_Chlorella_virus	2.5e-70	44.0
WP_001551069.1\|4021117_4023757_+	YdbH family protein	NA	NA	NA	NA
WP_000698145.1\|4023753_4023939_+	YnbE family lipoprotein	NA	NA	NA	NA
WP_001306533.1\|4023946_4024273_+	YdbL family protein	NA	NA	NA	NA
WP_001067519.1\|4024444_4025350_-	transcriptional regulator FeaR	NA	NA	NA	NA
WP_001551070.1\|4025585_4027085_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_000535436.1\|4027143_4029417_-	primary-amine oxidase	NA	NA	NA	NA
WP_001551071.1\|4029664_4031710_-	phenylacetic acid degradation bifunctional protein PaaZ	NA	NA	NA	NA
WP_071591516.1\|4031958_4032924_+	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA
WP_000073393.1\|4032935_4033223_+	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA
WP_001551072.1\|4033231_4033978_+	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA
WP_001189203.1\|4033992_4034490_+	phenylacetate degradation protein PaaD	NA	NA	NA	NA
WP_001551073.1\|4034497_4035568_+	phenylacetate-CoA oxygenase/reductase subunit PaaK	NA	NA	NA	NA
WP_001551074.1\|4035564_4036332_+	2,3-dehydroadipyl-CoA hydratase	NA	NA	NA	NA
WP_001551075.1\|4036331_4037120_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA
WP_019842675.1\|4037121_4038546_+	3-hydroxyacyl-CoA dehydrogenase PaaC	NA	NA	NA	NA
WP_001551077.1\|4038538_4038961_+	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA
WP_001206190.1\|4038960_4040166_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA
WP_000632281.1\|4040192_4041506_+	phenylacetate--CoA ligase	NA	NA	NA	NA
WP_001551078.1\|4041606_4042557_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA
WP_001551079.1\|4042538_4043129_+	phenylacetic acid degradation protein PaaY	NA	NA	NA	NA
WP_060579170.1\|4043459_4048481_+	autotransporter domain-containing protein	NA	NA	NA	NA
WP_001563833.1\|4048688_4049549_+	pyridoxine 4-dehydrogenase	NA	NA	NA	NA
WP_000048949.1\|4049662_4050268_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
WP_001551082.1\|4050468_4054371_+	ATP-dependent RNA helicase HrpA	A0A1V0SIV3	Klosneuvirus	7.6e-54	29.7
WP_001523214.1\|4054655_4054994_+	hypothetical protein	NA	NA	NA	NA
WP_001314706.1\|4054980_4055430_+	hypothetical protein	NA	NA	NA	NA
WP_000343026.1\|4055549_4055927_+	hypothetical protein	NA	NA	NA	NA
WP_060579171.1\|4056042_4056843_+	YdcF family protein	NA	NA	NA	NA
WP_000115969.1\|4057039_4058479_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_000048646.1\|4058520_4059522_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_001306523.1\|4059710_4060241_+	cytochrome b561	A0A0U2QLA7	Escherichia_phage	2.0e-18	43.9
WP_000731833.1\|4060485_4060659_+	periplasmic protein	A0A0R6PKG1	Moraxella_phage	4.4e-07	67.4
WP_001309484.1\|4060730_4060880_-	type I toxin-antitoxin system toxin HokB	NA	NA	NA	NA
WP_085948682.1\|4060979_4062349_-\|transposase	IS3-like element IS150 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	4.8e-112	99.5

DBSCAN-SWA_13

4368205 : 4423165

Enterobacteria_phage(43.4%)

tRNA,holin,portal,tail,capsid,integrase,head,terminase

attL 4383874:4383888|attR 4425146:4425160

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000672359.1\|4368205_4370593_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_001551178.1\|4370607_4371591_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2I2L4E3	Orpheovirus	1.7e-34	37.4
WP_001386830.1\|4371729_4371774_-	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_000124850.1\|4371896_4372253_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_001124225.1\|4372306_4372504_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_001700733.1\|4372600_4373143_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	6.3e-15	32.9
WP_001144202.1\|4373146_4375075_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	9.4e-130	37.3
WP_000877736.1\|4375813_4377556_+	hypothetical protein	NA	NA	NA	NA
WP_001551179.1\|4378037_4378331_-	hypothetical protein	NA	NA	NA	NA
WP_016247637.1\|4378373_4379414_-\|tail	tail fiber domain-containing protein	A0A0E3M4A9	Enterobacteria_phage	3.0e-122	66.1
WP_001518417.1\|4379423_4379705_-	hypothetical protein	A0A1X7QHA1	Escherichia_phage	1.4e-18	50.0
WP_138585055.1\|4379704_4382080_-\|tail	phage tail protein	A0A1X7QGG5	Escherichia_phage	6.3e-168	69.5
WP_094179059.1\|4382144_4382744_-	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	2.8e-101	91.5
WP_000515622.1\|4382811_4386207_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	89.5
4383874:4383888	attL	NA	NA	NA	NA
WP_000090882.1\|4386267_4386870_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	6.2e-88	85.1
WP_024177847.1\|4386806_4387550_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.8e-145	96.0
WP_001560932.1\|4387554_4388253_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	6.8e-131	97.8
WP_000847355.1\|4388252_4388582_-\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	1.5e-56	96.3
WP_106106625.1\|4388578_4391140_-\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	86.3
WP_000459457.1\|4391132_4391567_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_060579045.1\|4391548_4391971_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	3.6e-58	82.1
WP_001577918.1\|4391986_4392727_-\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	6.1e-130	98.0
WP_032244082.1\|4392734_4393130_-	hypothetical protein	A0A0K2FIF4	Enterobacteria_phage	1.4e-69	97.7
WP_021528534.1\|4393126_4393705_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	7.8e-80	99.0
WP_000753019.1\|4393716_4394070_-\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	2.6e-62	98.3
WP_000158899.1\|4394081_4394477_-	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	2.0e-55	92.4
WP_000063260.1\|4394518_4395544_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	3.4e-187	97.1
WP_060579022.1\|4395599_4395932_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	1.4e-54	99.1
WP_000123236.1\|4395941_4397261_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	9.0e-233	98.4
WP_019842487.1\|4397241_4398843_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	2.2e-310	99.4
WP_000198149.1\|4398839_4399046_-\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001027290.1\|4399042_4400968_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.8
WP_000453587.1\|4400942_4401488_-	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	1.4e-94	98.9
WP_001307652.1\|4401876_4402071_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	9.7e-27	96.8
WP_000548594.1\|4402321_4402528_-	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	2.6e-22	80.9
WP_001019207.1\|4402823_4402997_-	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_001443523.1\|4403169_4403325_-	hypothetical protein	NA	NA	NA	NA
WP_071528545.1\|4403472_4403661_-	cold-shock protein	NA	NA	NA	NA
WP_000066495.1\|4403671_4403884_-	cold shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
WP_001071778.1\|4404247_4404745_-	DUF2514 domain-containing protein	NA	NA	NA	NA
WP_001101173.1\|4404741_4405275_-	lysozyme	K7PLY1	Enterobacteria_phage	1.4e-96	93.8
WP_001557934.1\|4405388_4405649_+	hypothetical protein	NA	NA	NA	NA
WP_072201599.1\|4405596_4406148_-	YdfR family protein	Q08JA0	Stx2-converting_phage	1.3e-36	51.1
WP_000839581.1\|4406152_4406368_-\|holin	holin	A5LH82	Enterobacteria_phage	7.9e-30	90.1
WP_000066482.1\|4407120_4407336_-	cold shock-like protein CspB	A0A1W6JNX5	Morganella_phage	2.6e-25	76.5
WP_001589622.1\|4407636_4407849_+	cold shock-like protein CspF	NA	NA	NA	NA
WP_122990953.1\|4407903_4407993_+	hypothetical protein	NA	NA	NA	NA
WP_001589621.1\|4408271_4409024_-	antitermination protein	K7PGU5	Enterobacteria_phage	7.1e-134	97.6
WP_001589620.1\|4409037_4410027_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.7e-194	99.4
WP_001072669.1\|4410034_4410850_-	KilA-N domain-containing protein	U5P4K5	Shigella_phage	8.5e-149	99.3
WP_000767110.1\|4411012_4411408_-	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	5.7e-66	98.4
WP_000210181.1\|4411404_4411731_-	LexA family transcriptional regulator	U5P451	Shigella_phage	9.2e-54	100.0
WP_021518588.1\|4411727_4412381_-	phage N-6-adenine-methyltransferase	S5M7S1	Escherichia_phage	4.3e-127	99.1
WP_001305611.1\|4412380_4412875_-	PerC family transcriptional regulator	A0A291AWV6	Escherichia_phage	1.5e-87	99.4
WP_060579161.1\|4412871_4413813_-	helix-turn-helix domain-containing protein	S5FM81	Shigella_phage	1.2e-135	95.8
WP_071789194.1\|4413802_4413982_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	4.6e-15	68.5
WP_060579163.1\|4414157_4414715_-	hypothetical protein	K7PGU3	Enterobacteria_phage	1.0e-92	93.5
WP_000205494.1\|4414752_4414953_-	cell division protein	NA	NA	NA	NA
WP_000450737.1\|4415050_4415677_+	LexA family transcriptional regulator	K7PM82	Enterobacteria_phage	1.9e-47	48.8
WP_000357060.1\|4416044_4416548_-	hypothetical protein	A0A077K9U2	Edwardsiella_phage	1.2e-31	47.6
WP_120785030.1\|4416749_4416995_+	hypothetical protein	NA	NA	NA	NA
WP_000135680.1\|4417009_4417372_+	hypothetical protein	Q8SBF8	Shigella_phage	8.6e-61	100.0
WP_000081305.1\|4417437_4418262_+	YfdQ family protein	Q8SBF9	Shigella_phage	2.3e-149	98.9
WP_000008178.1\|4418389_4418926_+	5'-deoxynucleotidase	A0A0P0ZCH9	Stx2-converting_phage	2.2e-100	99.4
WP_001242716.1\|4418916_4419279_+	hypothetical protein	K7PH61	Enterobacteria_phage	5.8e-65	98.3
WP_023154558.1\|4419278_4419899_+	DUF551 domain-containing protein	A5LH60	Enterobacteria_phage	2.5e-116	93.2
WP_029402496.1\|4419898_4420147_+	helix-turn-helix domain-containing protein	A5LH59	Enterobacteria_phage	1.7e-31	98.4
WP_053891200.1\|4420343_4421570_+	dNTP triphosphohydrolase	NA	NA	NA	NA
WP_001218280.1\|4421941_4423165_-\|integrase	site-specific integrase	A0A291AWU1	Escherichia_phage	1.5e-234	97.8
4425146:4425160	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040390

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection