CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040503	Actinomyces sp. oral taxon 848 str. F0332 chromosome, complete genome	26 crisprs	WYL,cas4,DEDDh,DinG,cas9,cas1,cas2,csa3,cas3	3	14	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040503_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040503_1

77203-77286

Orphan

Consensus_repeat	Method
CCCGGGCGCCGAAGAGGCGAACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040503_1

>merge|NZ_CP040503|1|77203-77286|CRISPRCasFinder
CCCGGGCGCCGAAGAGGCGAACGTACCGTACGTCCTCGCGCAGTGCGCCCCAGTCCCTCGCCCCGGGCGCCGAAGAGGCGAACG

>NZ_CP040503|1|1|77203-77286|CRISPRCasFinder
CCCGGGCGCCGAAGAGGCGAACG	TACCGTACGTCCTCGCGCAGTGCGCCCCAGTCCCTCGC
CCCGGGCGCCGAAGAGGCGAACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040503.1\|WP_009198734.1\|83644_84544_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|180448
NZ_CP040503.1\|WP_009198733.1\|84751_85141_+\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|377753
NZ_CP040503.1\|WP_009198725.1\|91056_91962_+\|D-isomer-specific-2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240643
NZ_CP040503.1\|WP_009198742.1\|71019_72522_+\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|212667
NZ_CP040503.1\|WP_009198732.1\|85391_86216_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009198745.1\|67818_69609_+\|apolipoprotein-N-acyltransferase	unknown	unknown	gnl\|CDD\|143595
NZ_CP040503.1\|WP_040322665.1\|72704_74645_+\|uracil-xanthine-permease	unknown	unknown	gnl\|CDD\|274468
NZ_CP040503.1\|WP_009198744.1\|69605_70370_+\|polyprenol-monophosphomannose-synthase	unknown	unknown	gnl\|CDD\|133062
NZ_CP040503.1\|WP_009198730.1\|86932_88198_-\|alpha-hydroxy-acid-oxidizing-protein	unknown	unknown	gnl\|CDD\|376451
NZ_CP040503.1\|WP_009198738.1\|76277_76721_-\|FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|379873
NZ_CP040503.1\|WP_009198737.1\|77345_82688_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|137505
NZ_CP040503.1\|WP_009198728.1\|88371_90255_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP040503.1\|WP_040323142.1\|74753_75278_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133380
NZ_CP040503.1\|WP_138587042.1\|90538_91036_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237874
NZ_CP040503.1\|WP_009198746.1\|65221_67822_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|226947
NZ_CP040503.1\|WP_040323141.1\|82694_83096_-\|DUF5360-family-protein	unknown	unknown	gnl\|CDD\|340030
NZ_CP040503.1\|WP_138587212.1\|75489_76263_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133378
NZ_CP040503.1\|WP_009198747.1\|64295_65225_+\|diacylglycerol-kinase-catalytic-subunit	unknown	unknown	gnl\|CDD\|237021
NZ_CP040503.1\|WP_009198731.1\|86238_86745_-\|SRPBCC-family-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_040322667.1\|70443_70800_-\|RNA-polymerase-binding-protein-RbpA	unknown	unknown	gnl\|CDD\|379162

Protein	Function_ID	Function_description	E-value
NZ_CP040503.1\|WP_009198734.1\|83644_84544_+\|oxidoreductase	gnl\|CDD\|180448	PRK06182, PRK06182, short chain dehydrogenase; Validated.	1.08849e-163
NZ_CP040503.1\|WP_009198733.1\|84751_85141_+\|DUF1304-domain-containing-protein	gnl\|CDD\|377753	pfam06993, DUF1304, Protein of unknown function (DUF1304). This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.	4.26423e-24
NZ_CP040503.1\|WP_009198725.1\|91056_91962_+\|D-isomer-specific-2-hydroxyacid-dehydrogenase	gnl\|CDD\|240643	cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases. 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	3.13695e-105
NZ_CP040503.1\|WP_009198742.1\|71019_72522_+\|Hsp70-family-protein	gnl\|CDD\|212667	cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family. HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs.	2.98842e-71
NZ_CP040503.1\|WP_009198745.1\|67818_69609_+\|apolipoprotein-N-acyltransferase	gnl\|CDD\|143595	cd07571, ALP_N-acyl_transferase, Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.	1.69864e-78
NZ_CP040503.1\|WP_040322665.1\|72704_74645_+\|uracil-xanthine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	3.84365e-157
NZ_CP040503.1\|WP_009198744.1\|69605_70370_+\|polyprenol-monophosphomannose-synthase	gnl\|CDD\|133062	cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. This protein family belongs to Glycosyltransferase 2 superfamily.	2.60996e-85
NZ_CP040503.1\|WP_009198730.1\|86932_88198_-\|alpha-hydroxy-acid-oxidizing-protein	gnl\|CDD\|376451	pfam01070, FMN_dh, FMN-dependent dehydrogenase.	1.06173e-159
NZ_CP040503.1\|WP_009198738.1\|76277_76721_-\|FHA-domain-containing-protein	gnl\|CDD\|379873	pfam16697, Yop-YscD_cpl, Inner membrane component of T3SS, cytoplasmic domain. Yop-YscD-cpl is the cytoplasmic domain of Yop proteins like YscD from Proteobacteria. YscD forms part of the inner membrane component of the bacterial type III secretion injectosome apparatus.	1.84797e-21
NZ_CP040503.1\|WP_009198737.1\|77345_82688_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|137505	PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional.	0
NZ_CP040503.1\|WP_009198728.1\|88371_90255_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	4.89559e-99
NZ_CP040503.1\|WP_040323142.1\|74753_75278_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133380	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	4.40902e-19
NZ_CP040503.1\|WP_138587042.1\|90538_91036_+\|hypothetical-protein	gnl\|CDD\|237874	PRK14971, PRK14971, DNA polymerase III subunit gamma/tau.	2.31545e-07
NZ_CP040503.1\|WP_009198746.1\|65221_67822_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|226947	COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair].	2.51278e-158
NZ_CP040503.1\|WP_040323141.1\|82694_83096_-\|DUF5360-family-protein	gnl\|CDD\|340030	pfam17314, DUF5360, Family of unknown function (DUF5360). This is a family of unknown function. It is present in Bacteria and most of the family members are predicted to have 4 trans-membrane regions.	2.84212e-49
NZ_CP040503.1\|WP_138587212.1\|75489_76263_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133378	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	3.31045e-15
NZ_CP040503.1\|WP_009198747.1\|64295_65225_+\|diacylglycerol-kinase-catalytic-subunit	gnl\|CDD\|237021	PRK11914, PRK11914, diacylglycerol kinase; Reviewed.	2.68308e-49
NZ_CP040503.1\|WP_040322667.1\|70443_70800_-\|RNA-polymerase-binding-protein-RbpA	gnl\|CDD\|379162	pfam13397, RbpA, RNA polymerase-binding protein. RbpA is a family bacterial RNA polymerase-binding proteins. RbpA acts as a transcription factor by binding to the sigma subunit of RNA polymerase.	4.59948e-44

>NZ_CP040503.1|WP_009198738.1|76277_76721_-|FHA-domain-containing-protein
MPERFEANEADPTTTSVFKTVGGDSDVNIARRALKPEEQAAIESLPKGSALLIALSGPNSGARFLLNEDRTNAGRHQKSDIFLDDATVSRKHAQFIRSGDEFSVRDSGSLNGTYVNRERVDAHALHTGDEVQIGKFRLTFYEAPATA
>NZ_CP040503.1|WP_138587212.1|75489_76263_-|MerR-family-transcriptional-regulator
MTSAARKPAAAPEAEAVEAQPEGRWPFDVPHDPYLKIGEVQSMLAAEFPLLTLSKIRHYESIELVHPHRTASNQRLFSPADCERLRFILREQRDRYLPLDQIRELLRQLDAGQQPEGTHPGRLRLIDDAAKRPQPGTRLRLTEVADLTGVSVSDVEEMVDAGILAADPRGRLTAQAPDIVRFATMLLGAGFTLRQVRSVRTSAHAHAVLVTNSIATERARKSSVARERAIASATENATVISQLYRALLTENIEVELR
>NZ_CP040503.1|WP_040323142.1|74753_75278_-|MerR-family-transcriptional-regulator
MLFGDPLPDLDYETGYRGPIACRAAGITYRQLDYWDRTGLISPSIRNAHGSGSQRLYSFRDILVLKIVKRLLDTGVSLQQIRLAVAQLESHGVEDLAQITLMSDGASVYECTSDDEVIDLVKGGQGVFGIAVGRVWREVEGTLGELPTERAEEAGAVVVEDELAKRRAAKKRKA
>NZ_CP040503.1|WP_040322665.1|72704_74645_+|uracil-xanthine-permease
MAHPVDRAPSAPTLAVLSIQHVLAFYAGAVIVPLLIAGGLHLNAETTIHLIDADLLTCGVATLIQSVGITRFVGVRLPIIQGVTTTAVAPIIAIGVASARGGDPNSALPTIYGAVIASGLFTFFAAPYFAALVRFFPPVVTGTVLLVMGTTLLSVSASDFVGYATAAPSAASAHGAVPLQPRSLLYAFGTLAAIVLAQRFLRGFLATIAVLIGLVGGTAVAAVLGHLDPKDIDAFKSAGSFAATTPFYFGTPTFAAGAIVSMTIVMAVTMVETTGDVFATGEIVGKRIRKADISAAIRADGLSTLLGGVMNSFPYTCFAQNVGLVRITRVKSRWVAAGAGVVMMILGVLPKAGALVATIPSPVLGGASLAMFANVAWVGMQTIAKADMRDNRNAVIVTTSLGLAMLVTFKPFIAESMPSWARIFFASGMTAGAIAAIALNVLFFHVGRGGGAPVVSAPDGRALTIDEVNTMGRERFVEAFSPLFNTQTWPLERAWESRPFADAEEFRNALEKAILTASQERKLALLRDYPDISRLLEEDDAAAQKVSRDIGSTALGEASPEELERLSTLAEAYAERFGWPLVAYLGPLDTAERLIESGARRLSHSAEQEQVLALSEVIDVAYDRFDMLLADANPVRTAWESKLTGQ
>NZ_CP040503.1|WP_009198742.1|71019_72522_+|Hsp70-family-protein
MRLGIDFGTTRTTVAVADRGNYPLLAFSDRNSDAREYIPSIVALADSGPVYGFEAASLALKGAPHLRSFKRLLSRTDVNQDAEVELGGLTIPLIDVVSGFLTHVAKSVRSAAKPARGELEAVVGIPAHAHSAQRLITLESFRRAGIDVVAMINEPSAAGFEYTHRLTKSLNSRRTRILVYDLGGGTFDASLVAADDKSHEVLGSRGDNNVGGDDFDVALASFALEKSGRGELAADEWQRLLDSARQAKESLYPQSRYVAVDVPGSSSPTSIPVKEFYDLVAPLIESTLATMEPLLTQDEGGASKLPDDVAGLYVVGGGSELPAVGRTLRSRYGRRVHRSPYTAGSTAIGLAIAADPSAGYTLTDRLARGVGVFRDREGGSVISFDPLLGSEQRVSPNEDVTVVRTYRAAHNVGWYRFVEYTRTDAEGVPRGEVVPCGTLAFPFDPALRGGEVDVDDVEVQRTGDGPLIEERYTVDRHGIVEVSIRDVESGYEVTRSLGAR
>NZ_CP040503.1|WP_040322667.1|70443_70800_-|RNA-polymerase-binding-protein-RbpA
MAERSLRGMKIGANSLETDEGVAFVERKQVIYACPSGHEFGVAMATDAEPPATWECRCGAEGLLRDEPATDDKKPAKPQRTHWDMLLERRTEDELKELLRERLELLRAGKLRLRRHHG
>NZ_CP040503.1|WP_009198744.1|69605_70370_+|polyprenol-monophosphomannose-synthase
MKVVVIIPTYNEIESLKPIVGRVRAAVPEADVLVVDDNSPDGTGDLADELASADSHVLVLHRAGKEGLGKAYIAAFSWATDKEYTHVVQMDADGSHRPEQLPLLLERAAMSDRPDLVIGSRYVRGGELEGWPKSREILSRAGNFYIKAWLGLPASDVTAGFRVYRVAFLRRLDLSSVESAGYFFQTDMTDKVHQLGGSIVEMPISFAQREAGESKLSAGIFTESLKRTTSMGAKRRGRQLAGLARRAADKLRGK
>NZ_CP040503.1|WP_009198745.1|67818_69609_+|apolipoprotein-N-acyltransferase
MSGRLAPLGPAALSVGAGVCLWASFAPLHLWPSAVLGVALLVAALRGRGFCASFACGFATGAVFFGLLCDWATEAAGTWIARAGLGGVLALYIGVLALVWQAFLRAWGGCAQATTGTGKAKDPKATAGKAAAAGKACAWKLVPALAVVWVAVEDLQGTWPEGGMPWGKLAFGQVEGPLVHLAPYGSTELVSFAVVALGASLAYAAQNARTRPRRALATAAGVCAALAAAAAIPLGGPPVGSAKVGFVQGNVSRDKSLTGYARAVSVTERLAKQTRKIEGKGAELVLWPESSSDLDPETTPEAHDVIEGAVSRLGVPLVLGIQRYPEDYRYNEYTLWLPGKGLTARYTKLHPVPFGEYIPARGFFRLFTKAVDQVSTDMRAGKGAAVLDVPLRGRRVRIAAPICFEVAYNEIVSESVRKGATLLTVPTNNASFGDSAESRQQFDMTRFRAVETRRTAIQISTMGVSGVVDADGTVREKTGMWTADARVASVGLHTHVTPAVRWGGPIRLACNLAAGATTALALWQTRRLPQLRRLGRRQFGRLRPRLPNLGDEAQGANGPAPDPPAPDSNGRLILSESRTESIGIGNIGNEDNKEER
>NZ_CP040503.1|WP_009198746.1|65221_67822_+|DEAD/DEAH-box-helicase
MNDALDHVDHFVEEYAARGIALDSFQIDACKAVARNRDVLVCAPTGSGKTVVAHFAVELALAKEKRCVYTAPIKALSNQKYSELAELHGEEYVGLLTGDVSVNRDAEILVVTTEVLRNMLFAGSPDIDDVGYVVLDEVHYLADRERGPVWEEVILTLPEHCRLIGLSATVPNTGELAGWLRSVRGKTELVHSTVRPVPLRQEVAVGRKVFRLFGKDGGPLGALVSAIAKLPPDGRGRISDRDRRRIIDLLAERDMLPAIEFIFSRKGCDKAVEALLQRDIALTGRKERAEAAARIAEVRATLSESDRRAVGFDAAARALVRGYGAHHAGVYPAIKELTEKLMEDGLLRIVYATGTLALGIDMPVRTVVVESLQRWDGEGFIDLSATEYTQLIGRAGRRGKDAVGHAVVLAGPDLDPYILADLGSGRVEALLSAFVPSYNTVVNLLARMPYEQARAMMGRSFAQYQRNADLAKLEARLARIRRRISAEEGRLHCDAGDVVEYVRLRAASGRAPKSVRKAAKREYRERVSRSFAQAKNGRLYAVHRDGDVDYVLVLSADRGKLRVIDWYGEISWLREADLGSELRDVGAVSLPVGRRLKDRSTREDLADAIVGQVEERTELGVDRDLLGSWSRFAVGPDADLAAHPCSACPDLAVHLKDAETLLSLDARAAEIEKTSAGFTDSVGREFDATAAALVDVGVLQNHGGAIEPGPGAPTLRKLHLENDLLAYTCLSVLTEGLTPSEFAGWASMFLADDRLGTARPRSPVLTKLARQAVGEAEFLRSVEDRHGIARTRDVTPGCADVFAAWASGASLDECLRASRMAAGDFIAAARRLIDLLGQFALAGEGTWIADVAGLARSRVRRSEVVA
>NZ_CP040503.1|WP_009198747.1|64295_65225_+|diacylglycerol-kinase-catalytic-subunit
MSGPPHARIGLLVNPTSRRGLAERDGIHAARCLRALGFDVVDLTAGSAEEAARMSSAAVASERLDALFAVGGDGTVGIAVDALADSKIPLGILAVGTGNDAARHFGLPRRDVDAALALALDALESKRTFAADVLEVASEAGSRRVMSVVSAGLDADVNRRTNSFSFPRGGARYARGIVSAVANFAPYGFRLEIDGRACSAPATLVSVANTRFFGTGLPIAPSATVTDGLADVVFAAGLSRLQIIDLLHRLALGRHPNHPLVHFVRARRVRIACEPRAGARPPDPMADGDRLGTLPIDVTCLPGAVEVLI
>NZ_CP040503.1|WP_009198737.1|77345_82688_-|DEAD/DEAH-box-helicase
MPSDFSSFPAFSGFSRASRSWFLSAFPSGPTSVQERAWAAIGRGENALVVAPTGSGKTLAAFFSAIDRLMRRSAEDREAKGVRVLYVSPLKALAADVERNLRRPLAGVERAARGLRESGEPDDRGESAELACELGVAEGPGLVREPGEPGESGGEFGIGAAAAPVSGNTRTNPVEETRAIDAALQGPRTSVGMRTGDTPAKERRRLRVNPPDILITTPESLYLMLTSEARKTLGAVSTVIVDEIHSLAGSKRGTHLALSLERLDGLLEEPAQRIGLSATVSPARTVADFLGGSRPVTIVEADSAASPDVAVSVPVADMAAIPPASVAGQMVVSMWPHIERAILDHVLRHRTTVVFVNSRGACERLTAHLNEEYANRFGGAEGSEAAADRFAGSAAAVGSVKSVEAHRQTQGRPGAGRKGLPAGPGAHRQSWGSGDSNYSTPPPETPVIAKAHHGSVSKEQRLAVENELKSGSLRCVVATASLELGIDMGSIDLVLQVAPPPSVASGLQRIGRANHAVGGRPRGAIYPVERTHLVDAAVAAEGMRTGAIEETELVANALDVLAQQTVAAVSVEETPADRWFETVRRAAPYAALPRESFDSVLELLSGAYASADLADFSPRIVWDREAGVLRARPGAQRLAVSFSGTIPDRGMFPVVLPEGAEEAGRRRVGELDEEMVYESRVGDVVTLGTSSWQIREIANDRVVVDHVSGRSSRLPFWRGEGPGRAASAGAAKGAFLREAEASLELASSPEAAGGRRPADNPESSASVRSEPHVSASFLSRLESAGLDENARENLVSLLLEQKAATGAIPSDETLVLERCRDENGSWRFVLHSPMGRRVHEPWAMAIRERIRRVAKIEPQMFASDDGIAFQLPATVGRPPGAELVVFDAEELRRLVTSRIGGTALFAARFRECAARALLTPSSRPGRRTPLWLQRLRAGQLLEASRQFRNFPVSVEAARECLQDVYDLPALAGLMERVEARSVRIVEAETASPSPFAHPLLFGYTGAFLYQEDLPRAERRAHLLSLDPEAIASLVGDGGVGQVLDESVLAEVEAELQRLAPGRRVRRDAEAVADLLRRLGPLTLEGVAARSVGACDDAPPAQEKGDSAAREDAADAADSSQADEKQPRQESESRFPRVGEGSARDGQEEAAASEAVRSLLEELAQSRRVVSVRLGGRECWAGAEDAPALRLALGVDVPEWAAEPGGLPCTSAVSRSPLEDLLLRCARTRARITAAAAAAEFGIGRATAAEALESLAESGSLMRIDDAHWMEASVFARVRNRSLARARAAIEPVRPAALHRLVLERAGIDRPGRGIDALAEAISLMEGVWLPASLWESVVFPARVADYSPGMLDELILSGDVLWQARSGGESGRASSEASRTGKESGRLANDASQTGGEPAKTGGAPVGEIAFFPTDSPLAPVAGAAVSADDVGWEDLWKLAREGAATALSFEPVRACLQPRAAAPKKRRVTSRRSRRYAAFAAARALSTEAQGIDSGGPAQGTQPGNSQLRQSSPGKCPAGVERLEAAMLQTTWRRLRPPRVSAEEAAVAMVESLLDRYGVVSRDIALAAGVPGGMASLTPVLRRMEDAGAVLRGTFVRGLGPVQYAERGTLDALRSFADSPSDADVRAAGEGDSEPAAAVLDFRDPACLMGRGVPWPDPALPSQIGERLAAAPPVGLPDPSRRPGSAVVLVDGEPALYAPENMKALVSYTPETAAFRSALRALTEFLRRAAARDPGIAARKRTVVESVNGVSALERAMGDALAEAGLARDPRGMRFAVGP
>NZ_CP040503.1|WP_040323141.1|82694_83096_-|DUF5360-family-protein
MRVGKPFLLAVDAGLLLYWTAFFLDLIPKEQRFRDYSNPIMQAWNWSFFPLDLSAALLGFLGVYLVRKGRAAGELVVTVGLTLTFCAGFMALSFWSYYGDFNLWWWLPNAALVLAPVVGFLEMSIGKVCGRKA
>NZ_CP040503.1|WP_009198734.1|83644_84544_+|oxidoreductase
MAKIPPAVKAVEKKAILITGASSGMGFAAAKELASQGHSVYGAARRVERMAPLTEYGVHTIELDVTDEEACKDAVGWVVAERGRIDVLVNNAGYGSYGAIEDVEIDEARRQFDVNVFGLAALTKAVLLHMRERRSGTIVNVSSMGGRLVSFMGGWYHATKYAVEALSDALRMEAAEFGIDVVLIEPGGIKTEWADIAADHLAESSKGGAYEQTAVKTAEGMRRQYSGKMMSDPDVVVRAISRAVNAKRPRPRYLVGFGAKPLVAAHAMLPTRAFDWVMKRAVFAPSRRKPRRSQQRRPR
>NZ_CP040503.1|WP_009198733.1|84751_85141_+|DUF1304-domain-containing-protein
MIVAGLIFAAVAALIHIYIFYLESIAWESERARAAFGTGSVEEARTTKFMAFNQGFYNLFLALLAIVGIAAQAAGSSAVGLTLVFAGAASMLAAAAVLFIASAPHRAAALKQGAFPLLAVGSLGLGLML
>NZ_CP040503.1|WP_009198732.1|85391_86216_+|hypothetical-protein
MPTTRINDRETERKMLDVAVSLVHQQGISAELDDLAFEQIVQEAGVPRDSAYRRWPKLHKFYGEVLLELASGTTLPVTESAIAEPAGAIVLDRIEHLGTAQGRRNVVVEMFRVAIGADYDSIVASPEWNTFAALVACHQGIADDGIRDAVAAELAATEDRYVLARARVYAQLSAILGYRLVPPLAGPDGFELMSRAAGAAIMGLVAKIGLGGPAYESPRYLRAFGSTDVAEWRPSTYIMASTIFSFIEPDPRTRWSRARVEDLVMAIAQFASRK
>NZ_CP040503.1|WP_009198731.1|86238_86745_-|SRPBCC-family-protein
MIRNVHERVVDAPIERLDALLDGLGQKGDRLWPTQNWPPMVLDRPVSEGGAGGHGAIRYHVAEYEPGARVRFAFDPATGIDGAHELSLDELSDGRCRMRHVLVGRARGRMRLLFSLAVEPLHDAVVEDMFDNAEREATGTLARPARWSLRVRLLRRLFREGKLATDNK
>NZ_CP040503.1|WP_009198730.1|86932_88198_-|alpha-hydroxy-acid-oxidizing-protein
MVKRQFPKPSEIFDLLHFKTPTLNAKKRRLDNSLTVWDLRKIAKRRTPKAAFDYTDGAAEGELSLRRARRAFQDIEFHPDILHPAEDVDTSCEILGGPSSMPFGIAPTGFTRLMQTEGEIAGAGAAGAAGIPFTLSTLGTTSIEDVKAANPRGRNWFQLYVMRKREISYALVERAKKAGFDTLMFTVDTPVAGARLRDKRNGFSIPPQITLKTVLDAVPRPWWWFDFLTTPKLEFASLKSTGGTVGELLDSAMDPTISHDDLAVIRSMWDGKIVVKGVQTVADAKRLADAGVDGVLLSNHGGRQLDRAPVPFHLLPHVVREVGKDTAVMVDTGIMNGADIVASVALGADFALIGRAYLYGLMAGGRAGVDRTIAILRDELVRTMKLLGVSSIAELEPRHITQLTRYVPVPKLAQHAAESVG
>NZ_CP040503.1|WP_009198728.1|88371_90255_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MDPWQADNEKPRSLPVLQRSVFLLSVISFSHAYFSFTSEPLLTDVSFVCAGGERLCVVGPNGAGKTTLLRLAACELEPDSGKVEAPAFSASPTSGGFDVGLRGFAQGSDAERRSPDAALHVGAGDSERSATVGDSLDSALRRPLGLRERFERLTARMSETPEGLTPAVAEEYDRLAAEMEAFDVWTLESRIGATLAGLGLGGVSRDRPLDSLSPGQRARLALAQTLMVRPPALVLDEPTNHLDSEARAFLSATMRSWAGPVLFTSHDRAFIDDVATGTLDLDVAVWQALARADGGELRGGIHRSGGGYSDYLVEKRRARAAHVEVYESQRAEKRRIEAHARASTSIGHKRAKPRTEVRMAQKFYADRAQKVSSRRINDDARRLEDLDRVEVAKPRTSSLSFAIPPAGPSSGILVSVREAAVPGRLASVSFELSAGERLLLTGANGSGKSTLLRWIAAGAPPTSDSTGSVDAAKGRAYVPQDLPEQPAPEAKASPAAPGAAPNDALGLVPADVWTRGIRELGKGIVQPRCTATPFPLLSAGNRRRVQLALAVARNPRILLIDEPTNFLDLDFIEALENAMTAWDGTLVVATHDEWLIEHWSGKRMHLHPLRRNGYQDPLTIASRRSNG
>NZ_CP040503.1|WP_138587042.1|90538_91036_+|hypothetical-protein
MSLPTSNATAEANEALDRSAARKSAKSPRAAAQTPDAAQPNGSNGQSGSVPAPQATQPPAASPQPAQPQPAQPQPSPTRAVPRTLGPFPIYPNLPRRMKHTPKPPATQQPSDDDDDDDDASRHYGRWRCDRRGRCWVEGRHVRHWRHGHHGHHGHRHWHDEDDDD
>NZ_CP040503.1|WP_009198725.1|91056_91962_+|D-isomer-specific-2-hydroxyacid-dehydrogenase
MAKIVVSVPSQPYAKALDGLAVDVVEWTIDAPCGRTDLDMVVVPAYKPFSALRRLEGNKPALVQLPSIGYDGVEHVIPKGFLVANAAGVHETATAELAVGATIAALRKLPDAVRNQGRRLWHREDAPGLADSTVLIVGAGGVANAIADRLAPFEVDVRRVGRSGRTDSRGTVRAASELADLLPAADVVILAVPLTDATRRMADDAFLSRMRDGAVLVNVARGAVADTEALLRHADRLALVLDVTDPEPLPEDHPLWEKAALITPHAGGASAAFAPRIKALVRRQAERLIAGDQPENVVLRP

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Crispr_ID: NZ_CP040503_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040503_2

434154-434249

Orphan

Consensus_repeat	Method
GCGCCCCTTGCGCAGACCTGTCACGTCGCCTC	CRISPRCasFinder

1 spacers

DinG

The CRISPR arrays of NZ_CP040503_2

>merge|NZ_CP040503|2|434154-434249|CRISPRCasFinder
GCGCCCCTTGCGCAGACCTGTCACGTCGCCTCTTTCTGGCCTAGAACGTCTGCTTCGTTCTGCAGCGCCCCTTGCGCAGACCTGTCACGTCGCCTC

>NZ_CP040503|2|2|434154-434249|CRISPRCasFinder
GCGCCCCTTGCGCAGACCTGTCACGTCGCCTC	TTTCTGGCCTAGAACGTCTGCTTCGTTCTGCA
GCGCCCCTTGCGCAGACCTGTCACGTCGCCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040503.1\|WP_009199812.1\|423817_424531_+\|transcriptional-repressor-LexA	unknown	unknown	gnl\|CDD\|234688
NZ_CP040503.1\|WP_009199833.1\|444886_446560_-\|ribonuclease-J	unknown	unknown	gnl\|CDD\|223668
NZ_CP040503.1\|WP_040323469.1\|431109_432513_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009199815.1\|428024_429524_-\|GTPase-HflX	unknown	unknown	gnl\|CDD\|274455
NZ_CP040503.1\|WP_009199820.1\|432963_433959_-\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NZ_CP040503.1\|WP_009199810.1\|422992_423625_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|184523
NZ_CP040503.1\|WP_009199825.1\|437265_438312_-\|recombinase-RecA	unknown	unknown	gnl\|CDD\|236476
NZ_CP040503.1\|WP_138587064.1\|430630_431104_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009199824.1\|436751_437285_-\|regulatory-protein-RecX	unknown	unknown	gnl\|CDD\|234646
NZ_CP040503.1\|WP_040323581.1\|424910_425888_-\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|133428
NZ_CP040503.1\|WP_009199827.1\|438828_439227_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP040503.1\|WP_040323473.1\|435184_436729_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|237674
NZ_CP040503.1\|WP_050758864.1\|426031_427984_-\|ATP-dependent-DNA-helicase	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|224120
NZ_CP040503.1\|WP_138587065.1\|440564_442016_+\|CapA-family-protein	unknown	unknown	gnl\|CDD\|378215
NZ_CP040503.1\|WP_040323467.1\|422413_422875_-\|transcriptional-repressor-NrdR	unknown	unknown	gnl\|CDD\|234774
NZ_CP040503.1\|WP_009199817.1\|429849_430500_+\|methyltransferase	unknown	unknown	gnl\|CDD\|368316
NZ_CP040503.1\|WP_009199829.1\|439900_440494_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|273139
NZ_CP040503.1\|WP_050758849.1\|439329_439857_-\|CinA-family-protein	unknown	unknown	gnl\|CDD\|334938
NZ_CP040503.1\|WP_009199832.1\|442122_444717_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|224588
NZ_CP040503.1\|WP_009199826.1\|438605_438842_-\|DUF3046-domain-containing-protein	unknown	unknown	gnl\|CDD\|378612

Protein	Function_ID	Function_description	E-value
NZ_CP040503.1\|WP_009199812.1\|423817_424531_+\|transcriptional-repressor-LexA	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	1.68313e-89
NZ_CP040503.1\|WP_009199833.1\|444886_446560_-\|ribonuclease-J	gnl\|CDD\|223668	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair].	0
NZ_CP040503.1\|WP_050758864.1\|426031_427984_-\|ATP-dependent-DNA-helicase	gnl\|CDD\|224120	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair].	1.37208e-138
NZ_CP040503.1\|WP_009199815.1\|428024_429524_-\|GTPase-HflX	gnl\|CDD\|274455	TIGR03156, GTP_HflX, GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). [Unknown function, General].	3.90228e-161
NZ_CP040503.1\|WP_009199820.1\|432963_433959_-\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	1.53497e-81
NZ_CP040503.1\|WP_009199810.1\|422992_423625_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|184523	PRK14125, PRK14125, cell division suppressor protein YneA; Provisional.	1.09681e-11
NZ_CP040503.1\|WP_009199825.1\|437265_438312_-\|recombinase-RecA	gnl\|CDD\|236476	PRK09354, recA, recombinase A; Provisional.	0
NZ_CP040503.1\|WP_138587065.1\|440564_442016_+\|CapA-family-protein	gnl\|CDD\|378215	pfam09587, PGA_cap, Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.	2.43234e-74
NZ_CP040503.1\|WP_009199824.1\|436751_437285_-\|regulatory-protein-RecX	gnl\|CDD\|234646	PRK00117, recX, recombination regulator RecX; Reviewed.	3.82398e-27
NZ_CP040503.1\|WP_040323581.1\|424910_425888_-\|L-lactate-dehydrogenase	gnl\|CDD\|133428	cd05292, LDH_2, A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	8.0441e-147
NZ_CP040503.1\|WP_009199827.1\|438828_439227_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	5.10463e-09
NZ_CP040503.1\|WP_040323473.1\|435184_436729_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|237674	PRK14326, PRK14326, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
NZ_CP040503.1\|WP_009199826.1\|438605_438842_-\|DUF3046-domain-containing-protein	gnl\|CDD\|378612	pfam11248, DUF3046, Protein of unknown function (DUF3046). This family of proteins with unknown function appears to be restricted to Actinobacteria.	8.54161e-24
NZ_CP040503.1\|WP_040323467.1\|422413_422875_-\|transcriptional-repressor-NrdR	gnl\|CDD\|234774	PRK00464, nrdR, transcriptional repressor NrdR.	1.52799e-74
NZ_CP040503.1\|WP_009199817.1\|429849_430500_+\|methyltransferase	gnl\|CDD\|368316	pfam05175, MTS, Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases.	6.26113e-34
NZ_CP040503.1\|WP_009199829.1\|439900_440494_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|273139	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. Alternate names: phosphatidylglycerophosphate synthase; glycerophosphate phosphatidyltransferase; PGP synthase. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharamyces cerevisiae YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. [Fatty acid and phospholipid metabolism, Biosynthesis].	6.64513e-27
NZ_CP040503.1\|WP_050758849.1\|439329_439857_-\|CinA-family-protein	gnl\|CDD\|334938	pfam02464, CinA, Competence-damaged protein. CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation. This Pfam family consists of putative competence-damaged proteins from the cin operon. Some members of this family have nicotinamide mononucleotide (NMN) deamidase activity.	4.89443e-46
NZ_CP040503.1\|WP_009199832.1\|442122_444717_-\|DNA-translocase-FtsK	gnl\|CDD\|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	9.55498e-145

>NZ_CP040503.1|WP_009199820.1|432963_433959_-|diaminopimelate-epimerase
MIIPQLEGRTLTKAHGTGNDFILVPDFAGTLDLPAEAVASVCDRHFGIGADGLIRVARTASVPEMADVARDFPEAEWFMDYRNADGSIAQMCGNGLRVFVHYLRIQGVIDLKPGRSVTVATRGGVKAVSFDGAVYTIDMGEYGLPRGDAGDDTRVAVPGVGERPALSVTMPNPHTVVLLDSAEELAAARLTEAPQYDPVPPEGTNLELVVAEPGDRVSLGGQVDLADQTFSGGQANRADQGLADRSVSPSNPALMRVLERGVGETLACGTGTCAAALAVLLSRGEREGEVRLRSPGGPLTVRIEGGRAFLTGPAVLVAEFSLIGVAGYSGE
>NZ_CP040503.1|WP_040323469.1|431109_432513_-|hypothetical-protein
MTAYSNVPMLVGRLKKAAIDAYMRSSCDSAFTDYEVHDDYYMVSTLVPQGQAAAPSDSQRITRPGDDGEGGGRTNGDSTMKYVHKFNEIRSAIDEVVGPWLDLPDPQRINTEKAKAFGVVGILAADINMQAGAPVGTGELHKALDRVNQKINDMSGATVMSFGLDFIDPLQGAVQGIQEGVAYWGASLAAEQKMFERARYIVLTAIEKSTKVFRGVADNEYQKLNIILQVVNEVVEAFDAFVEPTGLLKHGSTAVKLGLKGMKKVTEEDVKKGAPQNYESAMKAFRSAFKAIANRVELAEGKIQQTLVDNYEVMEVNHERVDMSMKTLSSSEIGKADKLKIDMNHIDDIVNRAMPKVSESLEDAAKRISGVFLSDCVRRDPRVGVGESGPSKQFDQLKVLLYKLLADLAWESRTGTKDFELAVHYIQTQDGQSKAALDSFNEQVSKGSGIRPWDKRPHNVKGGYSIS
>NZ_CP040503.1|WP_138587064.1|430630_431104_-|hypothetical-protein
MTLKRYVVIRTLVVAFALLWMGWLYFSRPEVLADAGGGKSSCHPVAWRYQGENYPLYSGFDASDSERIHEYFGKSVEGLKNEEEYYRRAEENIERSCEIARSDRRMFINVAAVVSVGLFLAVPKPKRAERSERNDSESGPNDSGNAEDSGNAETGGA
>NZ_CP040503.1|WP_009199817.1|429849_430500_+|methyltransferase
MANEHYFSQSPSSDEATVERLVSLRGREYAVATSGGVFSADHVDKGTAVLLHKAPEPDLGPGDLAIDLGCGWGPLTLALCEEAPGADVWAVDVNERALELTRKNAARAGFSPKALAADEALAALGERKIQLIWSNPPVRIGKARLHELLTTWIERLADDGAAYLVIQRNLGADSLRSWMLGQGWGCEKIGSAKGFRVFAVTRTPREGEETAADERG
>NZ_CP040503.1|WP_009199815.1|428024_429524_-|GTPase-HflX
MNESTSGAGSSESRIDLHTAEGTALQAVSHEDAGWSGDALEREERSSLQRIQGLETGISREEGVDVEYRQVRLERVVLVGLWSEGSASQAEDSLRELAALAETAGSKVLDGLIQRRALPDPATYLGSGKAHELADLVASLEADTVIADSELAPSQRRGLEDIVKVKVIDRTALILDIFARHAKSREGKAQVELAQLEYLLPRLRGWGDSMSRQAGGRVAAGAGIGSRGPGETQLELDRRRIRTRMAKLRRDIKRMGPARQQQRAERRRAATPSAVVVGYTNAGKSSLLNRLTGAGVLVENALFATLDPTVRRTQTASGREYTLADTVGFVRQLPTQLVEAFRSTLEEAGEADVLVHVVDASHHDPVGQVKAVRKVLAEVPGTREAREIVVLSKSDLADPVDLAALRSRFPGSIAVSCLTGEGVDELRAAIEEALPQPEIEIAVVVPYSAGALLSRIHDDGELLAPVEYRGEGVFVHARVPADIEAAMRRGGMLSPAETK
>NZ_CP040503.1|WP_050758864.1|426031_427984_-|ATP-dependent-DNA-helicase
MGGTRREGQEKMADAVAEALDGGGHLLVQAGTGTGKSIGYLAPAMEWAVKTDSRVIVSTATLALQRQIIAFDAPKAAEAVREMHGRAPEVALVKGWSNYVCLRKAAGGYPEEDALLSRASGEYGASATGEEVVRLREWAMATDTGDRDDLVPGVSERAWRQVSVAKPECIGAKCPMRGSCFPVLAREAAEEADIVVTNHSMLGVQSTGTPVLPESAAFVVDEAHELADRVTGQLTASISKGDVSSLVRLLRRESILATELENAGDEVTEALDELDEGRLEALPLSLADGLSRMLGELQQAREDVNDLGDKDEAAAAAKALARGRVKALADVVEQLLSDGVGEGALVPWVARDGEGRSSLHVAPLDVSSALADTLFEGKAAILTSATLETGGSFRHIAGAVGFTYPSQGPWKGIDVGSPFDHSRQGILYAAASLPPPGREGIGEAQLREIAELVEAAGGGALGLFTSRRAAETAAEYARERLDTPVLCQGDDQLSTLVRRFAEDDAASLFGTLSLWQGVDVPGRTCRLVLIDRIPFPRPNDPLTQARTKAVVDTGGNGFMSVAATHAALLLAQGAGRLLRRTDDRGVVAILDPRIVTARYGSFLAASLPPMWRTKDPHVARSALRRLAAAPDPARDCAGGSDSAVQTGAET
>NZ_CP040503.1|WP_040323581.1|424910_425888_-|L-lactate-dehydrogenase
MAPAIDPRTGGRGTKVAIIGAGAVGSAVTYASMIQGVARHYAMFDINESRVKAEALDIAQGSQFAPVSTVEGSSDIAVIKDSDVVVITAGAKQKPGQSRLELAGATIDIMKSIVPKAVEQAPDAIYLMVANPVDVVTYAGWKLSGLSDGRFFGSGTVLDSSRLRYLIALACGVAPQNVHAYIAGEHGDSEIPLWSSAMVGAVPLLQWGQTVDGKLLDDGVREAIHHDVVRSAYNIIEGKGVTNYAIGISVASILGSIVRDEHRVLPVSSYLEDWLGISDVCMSVPSIVGRAGVGRRLVPVVTPREYDGLRRSADSIRDVARQFGF
>NZ_CP040503.1|WP_009199812.1|423817_424531_+|transcriptional-repressor-LexA
MMVRRRTALTERQKEVLNALRSELLKNRYAPTIREIADRCGFSSTSSVKYQLDALEDKGYIVRDPRRPRTILLTELGLENTHRRLYADYTSAGIPRGAAAEEPKTSAEDFHVDPSVNVPVVGRIAAGSPILADQVVEEVLPLPRSLTGDGELFMLKVVGDSMVEAAICDGDWVVIRRQPVAENGEIVAAMIEGEATVKVLQRKDGHTLLLPRNSEYRPIPADDAEVLGRVVTVLRSL
>NZ_CP040503.1|WP_009199810.1|422992_423625_-|LysM-peptidoglycan-binding-domain-containing-protein
MSVLRIPADGKRKPATQRGKGARRLQAVGPDARRRCENTRDNRADRTLYDGERSKQEFPAPRLRAVPTAATPDDGKSDDGKAQPAGRLVPLRDRRSSRISPRPRCVYPKTTPAADESVASGAFGVRALRAAFAALACAAMIVMGLVVGSLLLPAERQTVVVQSGDTLWAIAARIDGAPSTPKAVTDIAQLNSLGSRDVKPGQKLVLPRYR
>NZ_CP040503.1|WP_040323467.1|422413_422875_-|transcriptional-repressor-NrdR
MRCPFCRHPESRVIDSRASDDGQAIRRRRQCPRCNRRFTTIETASLQVIKRSGAYEPFSRGKIISGVGKACQGRLVSEDDLARLAQLVEERIRANGASQIEAHEIGLAILEPLRELDTIAYLRFASVYSNYDSLDDFENAIRELRENPPESVK
>NZ_CP040503.1|WP_040323473.1|435184_436729_-|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MSAVELPRTYAIRTLGCQMNVHDSERLAGLLENAGYVPVAVVPEKAARATDAGDEGADVVVVNTCSVRENAATRLFGNLGQLAAVKRERPGMQIAVGGCLAQQMRGGIIEKAPWVDAVLGTHNLDVLPALLERARHNAEAAVEIEESLKVFPSTLPTRRESAFAAWVSISVGCNNTCTFCIVPHLRGKERDRRPGEVLAEVEAVVSEGAIEVTLLGQNVNSYGVGFGDRQAFAKLLRACGEIEGLERVRFTSPHPAAFSDEVIAAMAETPSVMPSLHMPLQSGSDRVLRAMRRSYRSSRFLGILDRVRARMPEAAITTDVIVGFPGETDEDFEATLDVVERSRFASAYTFIYSPRPGTPAADMDNQVDPEVVSDRYRRLVALQERISTEENKAKEGSAVEVLISEGEGRKDAETERVSGRAADNRLVHVALPAGIDAGDRPRPGDMVRAVVTHGAPHHLVADSALAGGLFEVRRTRAGEAWAAHRRRTEQLTAEAEGRAPVSLGMPTIRRRPAP
>NZ_CP040503.1|WP_009199824.1|436751_437285_-|regulatory-protein-RecX
MRQTRSEVMELSRSEWLEKGRAIVIRQLSMMDRSRHQLDEAMAKRGVPEDVRCEILDRYTELGLIDDAHFADALVQTRLAGAGTSRRVIAEELRRKGIDADIVEAAVGAIDDAEELGTATRLALKRLERGGGDRASLQQRVYAALARRGFSHDVCSIALRRANELLGSEDSAASWTD
>NZ_CP040503.1|WP_009199825.1|437265_438312_-|recombinase-RecA
MAAKSEDRAKALDVALSQIDRQFGKGSVMRLGDHVQTKIQVIPTGATSLDVALGVGGLPRGRVIEVYGPESSGKTTVALHAVANAQKNGGIAAFIDAEHALDPEYAKKLGVDTDALIVSQPDTGEQALEIADMLIRSGALDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGALSASGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRLDVRRIETLKEGSEPVGNRTRVKVVKNKMAPPFKQAEFDIMYGQGISREGCIIDMGVDGGIVRKSGAWYTYDGDQLGQGKEKARHFLRDNPEIADEIEGKILAKMGIAPEPDEGKDSQNAADEV
>NZ_CP040503.1|WP_009199826.1|438605_438842_-|DUF3046-domain-containing-protein
MRESEFWANLDWAFPRGRGRSLAQDLFLSELGGASPAEALREGQPPQAVWNAVCQAMDLPESYRFLHRISSGDRGRLP
>NZ_CP040503.1|WP_009199827.1|438828_439227_-|helix-turn-helix-transcriptional-regulator
MTMELRTGVNRKFESAPRVANRPVPTEQALLRRELGEVLREYRQRQGRTLREVSSDARVSLGYLSEVERGQKEASSELLSSICKALNVPLSHVLRLVADRVDFAEGRVPPRMRVPDSVPESLVRSELESARI
>NZ_CP040503.1|WP_050758849.1|439329_439857_-|CinA-family-protein
MPAEDHGPAPAGARGAAAEKVCSAIAEMAERSMTLACAESLTGGALCSAFVEIPGASAVLRGSVTAYAVDLKASILGVDGELLRTKGPVEERVALDMARGVCRIMGADVALATTGVAGPGPADGHAAGTVWVACTGKLGERARLCRFHGGRSDVRAQAVEAAVDLLTELLCMTFR
>NZ_CP040503.1|WP_009199829.1|439900_440494_-|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MSNSHGEDAAKAPLLNIANVLTVIRLALVPVFVVVYLDDAPVRSACAWAVFAAAAFTDKADGHLARSRNLVTDFGKIADSIADKALISSALILLSWHGRLYWWITVIMIGRELFITAMRMTVVKKKVMAAGRGGKIKMFFQSMGIAGLLIPWASFLPGALAKGLLWTSYAMIGVALYYSVASAVEYVAEARKIARGE
>NZ_CP040503.1|WP_138587065.1|440564_442016_+|CapA-family-protein
MPRCVCFHSGKPWFSMGIGSLNRIPFPMRRSGHDRIPIKGNFMTSRMQTFLGRKFVGLSLATAAVTAGALVFVPGYGASGGPNAKPSASSLRRPAAPSGSASGSTSTRPTGTQKPQSSTRFTIASGGDILLHLSVNHHAKTAEGYDYTKLLKAIQPWIEGSDLSLCALEVPIVPPGEKPSNYPAFGSPPQIADSLKAMGWDGCALATNHSMDRGFKGVSSTIDNFERVGLGHAGTARTRDESSKIQYYTVRSGGRDVVVAHLSATTLTNGVPFPKEKEWSWNVVGDQGRRAVKDLVADAKRARKAGASIVVVSMHWGAEYVTQPIAEQKKIGRELADSGEIDLVFGNHSHVAEPVTTLKGGPDGRGMPVVWSMGNTISGQLVENHGYGVVTGLMTTATIEVPAKGKPRVTGLEWTTLAQDQRTFRVFPLAELKKGARPQGMTLSRAEIEAREKTIYPVMATGSQSERTEAPKPQGQLVGNKRK
>NZ_CP040503.1|WP_009199832.1|442122_444717_-|DNA-translocase-FtsK
MSPRVPNNPAKKKPQKAPASKQPQKQQKAEADNAEPRLTGVRRDGVAFLLLGIAVIVALREWFGLSGALGGLIHHLTAGVVGVLSVVVPLLLIAAAVKFFRASTRDTNRRFAIGMGMLVFGVAGLAHIAVDPINPFEDFSGVEGAGGLIGLATGGTLGKLLSPYGAVPLLLLLIVFAVLYMTNTTVRELYGMIRERLRDEPDDEEDAPANRGVSASVPYEQAAAVEESPRPSRLFSRKKKADDGQVPPTEVLPGGDATEVLPGGAGRGKAKAKGGAGATEVIKPVVSSPQKPIDGTEPPSLPAPDISLEPTPGQQLTLDPSIVYQLPSLGDLKAGPPGKERTEANERVVAQLTQVFTDFGIDAQVVGFSRGPTVTQYEVELGPGVKVERITALSNNIAYAVASADVRILSPIPGKSAIGIEIPNVDRETVLLGDVLRSPVAQKADHPLTVGVGKNVRGQFVVANLAKMPHLLVAGATGAGKSSFINSMITSVMMRATPDQVRMILVDPKRVELTIYAGIPHLITPIITNPKKAAEALEWVVKEMDARYDDMAAYHFKNIVDFNEAVKAGTVQSHDPNRKLAPYPYLLVVVDELADLMMVAPRDVEASIQRITQLARAAGIHLVLATQRPSVDVVTGLIKANIPSRLAFMTSALADSRTILDQSGAEKLIGQGDALFMPAGASKPIRLQGAWVDEEEIERVVDHVKAQLSPRYRDDFEEVQEAKKQREEIGEDLEILLQAADLVVTSQFGSTSMLQRKLRIGFAKAGRMMDLLEQYEIVGPSEGSKARDVLVSPEYLDNALAMLRGERQSIFDDDAPAERADAAEGGQSDAVLEGHGVPEAENWHDDEDDPYGEDGEDAWQLTGR
>NZ_CP040503.1|WP_009199833.1|444886_446560_-|ribonuclease-J
MSNLRTPPDLSADTVRIVPLGGLGEVGRNCNVLEYGGKIVVVDCGVLFPEERQPGVDLILPDIDYLRDRVEDIEAIVLTHGHEDHIGAVPYLLKLRPDILLVGSRLTISFVEAKLAEHRIKANSRVVAEGDVEKIGPFEMEFISVNHSIPDALAVFVRTDQGNILITGDFKMDQLPLDGRLTDLRAFARAGEEGVDLFMCDSTNAEVPGFVPSESEIGPVIDDVFARATGQIIVASFSSHVHRVQQVLNAAHAHGRRVAFVGRSMIRNMGIAAELGYLDIPEGVLVDLADMPSLPENERVFMSTGSQGEPMAVLSRIASKSHPKVGAGPGDTVLFASSLIPGNENSVYRLINNLMKLGAKVVHQGNARVHVSGHAAAGELLYCYNILEPAYAMPIHGEVRHQVANGGIAVKTGVPPQNVILAENGSVIDMHDAEVSVVGQVPCHNIYVDGSSIGDITEEELKDRRILAEEGFVAIFAAVETKEKEIVTGPHIQARAVAEDDSVFDEILPDVADALRESLENGADTYQMQQAMRRVIGRWISRKLRRAPIIIPTVVEV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP040503_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040503_3

463440-463541

Orphan

Consensus_repeat	Method
GAGGCTTCGGCCCCCCGCCGCCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040503_3

>merge|NZ_CP040503|3|463440-463541|CRISPRCasFinder
GAGGCTTCGGCCCCCCGCCGCCGGGGCGGGGCATTCCCTGCGCGGGCGCGAACGGATTGTTGCCAGGGCGCGGCGCCTGGGGCTTCGGCCCCCCGCCGCCGG

>NZ_CP040503|3|3|463440-463541|CRISPRCasFinder
GAGGCTTCGGCCCCCCGCCGCCGG	GGCGGGGCATTCCCTGCGCGGGCGCGAACGGATTGTTGCCAGGGCGCGGCGCCT
GGGGCTTCGGCCCCCCGCCGCCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040503.1\|WP_009199848.1\|459479_460517_-\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235113
NZ_CP040503.1\|WP_009199844.1\|455062_457360_-\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|131743
NZ_CP040503.1\|WP_138587067.1\|453129_453309_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009199856.1\|469200_470028_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379120
NZ_CP040503.1\|WP_040323485.1\|472594_473305_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_050758850.1\|465612_466185_-\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_CP040503.1\|WP_009199845.1\|457511_457781_-\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP040503.1\|WP_082903192.1\|464215_464473_-\|YlxR-family-protein	unknown	unknown	gnl\|CDD\|377288
NZ_CP040503.1\|WP_009199842.1\|453378_454647_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP040503.1\|WP_009199854.1\|466256_467162_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009199838.1\|451084_451828_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NZ_CP040503.1\|WP_009199855.1\|467205_468990_-\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236405
NZ_CP040503.1\|WP_009199857.1\|470070_471210_-\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|234737
NZ_CP040503.1\|WP_040323586.1\|458012_459002_-\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_CP040503.1\|WP_009199852.1\|464620_465613_-\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061
NZ_CP040503.1\|WP_009199859.1\|471479_472385_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009199858.1\|471307_471487_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_138587068.1\|459004_459280_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366419
NZ_CP040503.1\|WP_138587066.1\|452648_453089_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009199849.1\|460542_461082_-\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787

Protein	Function_ID	Function_description	E-value
NZ_CP040503.1\|WP_009199848.1\|459479_460517_-\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235113	PRK03287, truB, tRNA pseudouridine synthase B; Provisional.	6.93853e-110
NZ_CP040503.1\|WP_009199844.1\|455062_457360_-\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|131743	TIGR02696, polyribonucleotide_nucleotidyltransferase, guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.	0
NZ_CP040503.1\|WP_009199838.1\|451084_451828_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	8.90865e-87
NZ_CP040503.1\|WP_009199856.1\|469200_470028_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379120	pfam13312, DUF4081, Domain of unknown function (DUF4081). This domain is often found N-terminal to the GNAT acetyltransferase domain, pfam00583 and FR47, pfam08445.	4.59825e-25
NZ_CP040503.1\|WP_050758850.1\|465612_466185_-\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	9.70308e-31
NZ_CP040503.1\|WP_009199845.1\|457511_457781_-\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	3.8364e-53
NZ_CP040503.1\|WP_082903192.1\|464215_464473_-\|YlxR-family-protein	gnl\|CDD\|377288	pfam04296, DUF448, Protein of unknown function (DUF448).	2.8704e-17
NZ_CP040503.1\|WP_009199842.1\|453378_454647_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	1.59937e-93
NZ_CP040503.1\|WP_009199855.1\|467205_468990_-\|proline--tRNA-ligase	gnl\|CDD\|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0
NZ_CP040503.1\|WP_040323586.1\|458012_459002_-\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	3.69345e-108
NZ_CP040503.1\|WP_009199849.1\|460542_461082_-\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	4.88213e-41
NZ_CP040503.1\|WP_138587068.1\|459004_459280_-\|hypothetical-protein	gnl\|CDD\|366419	pfam01019, G_glu_transpept, Gamma-glutamyltranspeptidase.	0.00228705
NZ_CP040503.1\|WP_009199857.1\|470070_471210_-\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	gnl\|CDD\|234737	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase.	0
NZ_CP040503.1\|WP_009199852.1\|464620_465613_-\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	5.4684e-154

>NZ_CP040503.1|WP_009199849.1|460542_461082_-|30S-ribosome-binding-factor-RbfA
MPNPRANRVAERIHEIVASLVTNRLKDPRLELVTVTDVRVTGDLQHATVFYTAYGDQRKLRDAGRALNRAKGNIRSHVGRQLGLRLTPTIEFTADALPETARSLEDALAAARHRDAEIAKSAEGAAPAGDADPYKKPRDVEEGEAADDASDGDALESGEAFEASFESSENDQAEGVDEA
>NZ_CP040503.1|WP_009199848.1|459479_460517_-|tRNA-pseudouridine(55)-synthase-TruB
MPWGEIPRGSFPGDGLAVIDKDPGVTSHDVVGAVRRLAGTKKVGHAGTLDPMATGVLCIGLGRATKLLRYVTGTAKEYEATIRFGIETSTEDAQGELVRARGAREADAAELARAMANLTGEVLQVPSSVSALKVEGRRAYDLVREGREVVLDARPIRVDVFEAVGGPRFAEACGAPVFDLDVRVVCGAGTYVRALARDLGEALGFGAHLTSLRRTRVGPWDVGEAVSVRECADAVEADGQMPVHTLADLCRAMFPALEVSEQAARDLRMGRFADSPFDFLGAKAAASAALAPSAAGRDAPGSGPDGRGSGSAVAVAWSDGTPVALVSRRGGRVKPDLLLTLASEE
>NZ_CP040503.1|WP_138587068.1|459004_459280_-|hypothetical-protein
MTNANHSHCGCGGSAVDAAVAAAIVRGHTAEPPASVEPTSECGCGGHGGCGCGGDGACGCGGGTGERPVVDERIVDLSEGRRDLGLRGLPA
>NZ_CP040503.1|WP_040323586.1|458012_459002_-|bifunctional-riboflavin-kinase/FAD-synthetase
MDVWRKPEDIPSGLVGTAVTIGVFDGVHKGHRAVLRETVRQAKERGLVSVALTFDPHPASVHSAQNVHLVSTLEDRIDRLAAAGIDAVYVQRYTLDYARATPREFFENQLVGELRARVVVVGEDVRFGFRNEGDGAVLAELGEEKGVDVTLVSDLAAPEGRRWSSTWVRELLAAGDVAGAARVLGRRHRIRGEVVHGFQRGRAIGFPTANLAGDDLGEVPADGVYAGWLVRSVEGSCAAEYLPAAISVGTNPHFEGTERTVEVHVLGRSDLNLYGESIAVDFVEYLRPMLSFDSLEGLLGQMDEDLRNTAEILGVPTAGRVDPASVTAV
>NZ_CP040503.1|WP_009199845.1|457511_457781_-|30S-ribosomal-protein-S15
MALKPEQKKQIIAEYATHEGDTGSPEVQVALLSARIKELTEHFRTHKHDHHSRRGLMLLIGQRKRLLAYLAEEDIERYRSLIARLGLRR
>NZ_CP040503.1|WP_009199844.1|455062_457360_-|polyribonucleotide-nucleotidyltransferase
MEGPDVHSSNAVIDNGAFGTRTIRFETGLLARQANGSALAYLDDDTTVFAATTASKAPKEHFDFFPLTVDVEERSYAAGRIPGSFFRREGRPGTEAILAARLIDRPLRPAFKKGMRNEVQVVATVMTINPDEAYDVLAINAASMATSLAGLPFSGPIGGTRMALIDGQWVAFPRWSELKRATFSMAIAGRVVGDDVAIMMVEAQAPEHADAVIKAGGAKPTEAEVAAGMEAAKPVIRTLCEAQSKLVEECGKPVGDFPFFPDYTDEQYEAVEEKIGGRFAPILGIVAKAERDEALNELTESVVEELAEAFPEEEAAIAAAVNAAFKKTMRHHVLTEGVRMDGRTPVEIRTITAEAGVLPRVHGSALFQRGETQILGVTTLNMLKMEQQLDNLSPATSRRYIHHYNFPPYSTGETGRVGSPKRREIGHGHLAEIALESQLPGREEFPYAIRQVSETMGSNGSSSMGSVCASTLSLYNAGVPLKAPVAGIAMGLVSATIDGETKYCTLTDILGAEDALGDMDFKVAGTREYVTALQLDTKLDGIPAAVLDAALGQARDARFAILDLITEAIDGPDEMAATAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGAEISIEDDGTVFIGATDGPSAEAARQAVNAIANPQMPEVGERFVGTVVKTTTFGAFISLAPGRDGLLHISQIRRIVGGKRVENVEDVLNVGDKVEVEIAEIDPRGKVSLHAVVEEEPEAPAEQEEAERPARRERGSRRAPRQRRRSSESSGSTE
>NZ_CP040503.1|WP_009199842.1|453378_454647_-|insulinase-family-protein
MSLTDDGALICRSVLASGVRVLTERVENAHTVSVGFWVGAGSADENEGTLGSTHFLEHLLFKGTASRSAKQLADRIDFLGGNFNAGTGKQLTYYYGHVVEEDLADAVELLADMVASSTLAETDMEMERGVILEELAMYADDASEVAHEQIASLVMGGHPLGRPIGGTSESVLGLDHANLTSHYRQNYRPEELVVTAAGKADHEALCAMVEASLRRAGWDLREGAAPAERRRRAPIEYPESRDLSIERPVEQSAVVVGMPAMTDEDERRYALYTLSTILGGGTSSRLFQEVREKRGLAYSTYSFPGLYHEGGLFGLYAGCSPESAKDVAEIMEGCLEAIAGESVTKMELETSYRRARADHAFSSESVGSRMNQLGQAEIVRGSLISRQEALRRSREVSADDVAAVAAELARAQRSRVTVGPSQ
>NZ_CP040503.1|WP_138587067.1|453129_453309_+|hypothetical-protein
MKDPNIKHLSGYSPTEEKSLDIFGMKFPLDFGAGTHTEYMNDGTQSQDQLADVVVGKAG
>NZ_CP040503.1|WP_138587066.1|452648_453089_+|hypothetical-protein
MAEGERQRHVDRFTKPEAPNDESIREQARKFVSLDGIEGWARDNVNRSLLEWDIEDTKRQRDALPGNKGPGEEYAAEGQARNHERARLRERLEELEKLRGQLGAEEGKPPKQPLLYDPATGQRRNLQRAGRPHLRHAPPNRFCEGL
>NZ_CP040503.1|WP_009199838.1|451084_451828_-|4-hydroxy-tetrahydrodipicolinate-reductase
MTIKVAVVGAAGRMGATVCEAVEAAEDMELTARLDAGDPISSESLGGADVAVEFSVPSASEANTLAILEAGADAVVGTTGWTEESLGRVRETAERLGRSAVIAPNYALSAVLVMSFAEKAAPYFESVEVLEMHHPNKVDAPSGTAISTASRIAKARAEAGVPAGPDATQTDPDGARGARIDGVNVHAVRLRGLNAHEQVMLGNPGEQLVIRQDSFDRSSFMPGVLLAVRSVRGRGGLTWGLDSIMGL
>NZ_CP040503.1|WP_082903192.1|464215_464473_-|YlxR-family-protein
MEMVRVVRRESAVVVDSRGTMQGRGAWVHPDLSCLKRAVRSRAFERALKAAPLDTGAVEELLVPSDGNPSESRDKKAGRDPMGTR
>NZ_CP040503.1|WP_009199852.1|464620_465613_-|transcription-termination/antitermination-protein-NusA
MDIQMNELRIVESELGISVDVIVGAIEDALLHAYQRVPGAVRGARVEMDRNTGKVTVYAPEVDEEGEVIGEFDDTPGDFGRIATSTARSIIAQRLRDAETDRVLGSFKGKQGEVVSGVVQQNPRHDSRDLLVDVGEHEAILRVEEQVPTERFRHGDHIRALVLEVSVGTRGASVRLSRTHPDFARKLFEMEVPEIQDGTVEIVALAREAGHRAKIAVWSDIPDVNAKGACIGHNGQRVRAVTTELGGEKIDIVDYDDDPKAFIAASLSPAKVVRVDILDKAERQARVIVPDGQTSLAIGKEAQNVRLAAKLTGWSIDIRKESDDLDAFDD
>NZ_CP040503.1|WP_050758850.1|465612_466185_-|ribosome-maturation-factor-RimP
MAPSRRTHPGGRRDSRNSRRPHQERRENAEMTESISTALDEVVASRGLYLEAVKIGRGGKNLVVKVVVDLPSGPGGVDSDRLTEVSRDISQRLDDVDLVQGAYTLEVSTPGAERSLREPRHFSRAQGRLVELRTVDGKSVVGRLVSLSGDALNVQVEGSRRSVPMAEVVSGRVKIDMSRAPQSAIEEEED
>NZ_CP040503.1|WP_009199854.1|466256_467162_+|hypothetical-protein
MTSRRLVFGLSALLAVLIIGLLIASGVRFDNQDVEPAPASSQERKRQALAEKSTLIADAAKRLAASSPNSNVFPRVESAASAYASALGGVWRPWPSGAPSGRTNPPVSTSAPANADASFLALKLGELSREAVAAANSAPASQRQTYLSVALDARLQAAGVATHAGGKASCGDVDPVAAGKAAATEEALSGVEAARQWLETDVASLPANQRQAGISRIDSIKAAQSAMISYGAKDRRPAVVALPKLAAGETLRGAALKRSSSALVSGAAKADKPNGEAAVSYACSLYATQEERDSAGTLLKK
>NZ_CP040503.1|WP_009199855.1|467205_468990_-|proline--tRNA-ligase
MSSLFVRTLREDPADAEVASHRLLVRAGYIRRAAPGIYTWLPLGLRVLRKIERIVREEMEAAGSQEVHFPALLPREPYEASGRWSDYGPTLFKLKDRKESDYLLAPTHEELFTLLVKDMYSSYKDLPLSLYQIQTKYRDEARPRAGVIRSREFVMKDAYSFDVDEAGLDASYAAMRSAYQRIFARLGLPFVICSAVSGAMGGSRSEEFLFPCEIGEDAFVRSAGGYAANTEAVTTVPPVEVDSSSFGQPIEIVTPGASTIATLVDAVNEAAPKPDGLWTAADTLKNVVVAAVHPDGKREVIVIGLPGDRDVDMKRVEAALAPAEVEMATPEDLEAYPELVPGYIGPQAVGPQSARPAEAEPPAPRYLLDPHVARGSRWVTGANKPDVHVVGLVYGRDFEADGSIEAAEVRAGDEAPDGSGPLEIAKGIEVGHIFQLGRKYAKALGLSVLDENGKSRTVTMGSYGIGITRVLAALAEENHDGRGLMWPASVAPAHVHIVAAGKDDALYAAAEEIAAGLEADGVEVLLDDRRKVSAGVKFADYELLGVPFGVVVGRGLAEGLVEIRDRAGETIEAPVEQARERIGELVRSALSAQS
>NZ_CP040503.1|WP_009199856.1|469200_470028_-|GNAT-family-N-acetyltransferase
MRSLGSSDAEAVLRFFESRPVDAVLARVAVEDMGLSGHRGIGLFDAANELTGFAWDWGNVIPLGFDAAGLDLLAEELLGKWRSATSMVGPSDQVMGLWERVEGQWGPAREIRRRQHSMVMGERLKTAPDPLVRQAELSDMPIVFPASVAMYIEEVGQDPTAFGNAYERRAEGLVMRGHTFIRTAPAADGVGERVVFKADVGALAGGVAQIQGVWVPPDLRGRGIATSGIAASVALIREKVASTVSLYVNDFNEAAVAVYRKVGFDAVGEWTTIYI
>NZ_CP040503.1|WP_009199857.1|470070_471210_-|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase
MPGLRPELNVLSPRKRTRQIQVGSVAVGGDAPISVQSMTTTKTHDIGSTLQQIAELTAAGCDIVRVACPTDKDASALKIIAQQSRIPVIADIHFQPKYVFAAIEAGCGAVRVNPGNIRKFDDKVADICKAASDCGVSLRIGVNAGSLDPRLLKKYGSATPEALVESAVWEASLFEECGFRDFKISVKHHDVVTMVRAYQMLAERGDWPLHLGVTEAGPAFQGTIKSAAAFGTLLAQGIGDTIRVSLSAPPVEEVKVGSKLLEFMGLRPRKLEIVSCPSCGRAQVDVWTLAESVEEGLKDVKAPLRVAVMGCVVNGPGEAREADLGCASGNGKGQIFVHGQVVETVPEDQIVETLLKYANEMAEEMGEAAEGDKPVVQAF
>NZ_CP040503.1|WP_009199858.1|471307_471487_-|hypothetical-protein
MYENDGAEDHPSILHSVGVPTSVSFFLVSVSLIAGGLSLLAAAVSLAFVKPARAFTHGE
>NZ_CP040503.1|WP_009199859.1|471479_472385_-|hypothetical-protein
MNQVEGEQIRGDGGESVRKGKGGSVQEGGGESLPDREERPTLGSMYGLYRLQGILAFVVPLACLASYYAAYAATGDSSDVAMVLGMALTMLIGQTAAWIASATKARKIGVLGLGRPTAACLVAYCACASFVVVCLAFGTRLFHVRGLDRGAALRLTAPVMVVLLLAAVASALASEPTADGAGKSTPPVRGQPGPPSRQRRGGGPAMPGLRRFVYRRQGLMMLGVVAAITLMPGGVCKKGWMVFIGVLFLSPIALFGLLLVRIVTHSRMKRSNDVARAMPAPTAVFFDGRLRKRDPLRTEHV
>NZ_CP040503.1|WP_040323485.1|472594_473305_-|hypothetical-protein
MDDRADDAFGDLLGVFLRKERKRETQNGSNRLRLKRTGGRGRRMSAIAGKRAAARAEPRTPGWFVRFMLFFQIAMIYFAPFLAILVPKWSGNDAVVDKIATCLFLPVMLLAQMLIFMVTMMRAISSGVFALGYVVSTFLCSYYLCVFAYALSMGGFGGEGSHPPFLRRIGFSFETSMSVAVFSVCFGVFSLLLALATSFCDSPKRSDKGKFVSLVDRPKVSERGTLDGDGSPFISS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP040503_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040503_4

514789-514877

Orphan

Consensus_repeat	Method
GGATCGCCCACGTGTAGAGGGGATCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040503_4

>merge|NZ_CP040503|4|514789-514877|CRISPRCasFinder
GGATCGCCCACGTGTAGAGGGGATCGCCGAAATTCCTCAAAGCCGGGCGTCAGTTCATTTAGGATCGCCCACGTGTAGAGGGGATCGCC

>NZ_CP040503|4|4|514789-514877|CRISPRCasFinder
GGATCGCCCACGTGTAGAGGGGATCGCC	GAAATTCCTCAAAGCCGGGCGTCAGTTCATTTA
GGATCGCCCACGTGTAGAGGGGATCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040503.1\|WP_138587222.1\|509096_509792_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009199902.1\|507561_508662_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009199921.1\|524243_524447_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_040323498.1\|522330_523314_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270329
NZ_CP040503.1\|WP_009199907.1\|510757_511855_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009199920.1\|523801_524218_-\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|239876
NZ_CP040503.1\|WP_009199898.1\|505166_506729_-\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_CP040503.1\|WP_009199916.1\|521578_522328_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224095
NZ_CP040503.1\|WP_009199914.1\|519589_520231_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224095
NZ_CP040503.1\|WP_138587223.1\|513401_514607_-\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_CP040503.1\|WP_009199903.1\|508665_509088_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009199915.1\|520223_521582_+\|betaine/proline/choline-family-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213262
NZ_CP040503.1\|WP_009199919.1\|523501_523783_-\|HPr-family-phosphocarrier-protein	unknown	unknown	gnl\|CDD\|376329
NZ_CP040503.1\|WP_138587072.1\|512277_512973_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_138587224.1\|524443_526066_-\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|223362
NZ_CP040503.1\|WP_009199908.1\|511858_512281_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009199906.1\|510346_510754_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009199900.1\|507081_507330_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_040323610.1\|515813_519365_-\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|274008
NZ_CP040503.1\|WP_040323497.1\|515074_515434_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040503.1\|WP_138587224.1\|524443_526066_-\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	gnl\|CDD\|223362	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].	2.70582e-129
NZ_CP040503.1\|WP_009199919.1\|523501_523783_-\|HPr-family-phosphocarrier-protein	gnl\|CDD\|376329	pfam00381, PTS-HPr, PTS HPr component phosphorylation site.	8.08713e-15
NZ_CP040503.1\|WP_040323498.1\|522330_523314_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270329	cd13611, PBP2_YehZ, Substrate-binding domain YehZ of an osmoregulated ABC-type transporter; the type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein YehZ of Clostridium sticklandii is predicted to be involved in uptake of compatible solutes such as choline, L-proline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. YehZ belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.35188e-154
NZ_CP040503.1\|WP_009199920.1\|523801_524218_-\|nucleoside-diphosphate-kinase	gnl\|CDD\|239876	cd04413, NDPk_I, Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that are most essential for catalysis.	5.90881e-68
NZ_CP040503.1\|WP_009199898.1\|505166_506729_-\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_CP040503.1\|WP_009199916.1\|521578_522328_+\|ABC-transporter-permease	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	1.18915e-48
NZ_CP040503.1\|WP_009199914.1\|519589_520231_+\|ABC-transporter-permease	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	7.43732e-47
NZ_CP040503.1\|WP_040323610.1\|515813_519365_-\|chromosome-segregation-protein-SMC	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0
NZ_CP040503.1\|WP_138587223.1\|513401_514607_-\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	7.59745e-161
NZ_CP040503.1\|WP_009199915.1\|520223_521582_+\|betaine/proline/choline-family-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213262	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter. OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	7.46448e-146

>NZ_CP040503.1|WP_138587223.1|513401_514607_-|signal-recognition-particle-docking-protein-FtsY
MYYVVGAIVLLCLVAVAGLAIKKRGERRRPEIPTTPKPPAIEGPEGEAEEALAPDAAGAVQAEVREPETGEAESGEADLAEVEPEEITAAPIEAPESVPSRMQRLRARLARSGGFGNALLKILSRGDLSPADWEEIEDTLLMADVGLEATTQIMDNLKKRTKVEGTRDPERVKAILREELLELIDPAADRSLHLERIDGDPASILMVGVNGTGKTTTVGKLARVLVAEGSRVLLGAADTFRAAAADQLQTWGERVGVDVVRSDREGADPASVAFDAIDKGRETDVDVVLVDTAGRLQNKSGLMDELGKIKRVMSKRVPVNEVLLVLDATTGQNGMRQAEVFAEVTGITGIVLTKLDGTAKGGIVISVQRELGVPVKFVGLGEGVDDLAPFDAEGFVDALTA
>NZ_CP040503.1|WP_138587072.1|512277_512973_+|hypothetical-protein
MKARMNNREWQEIQRVLAGGSGDCGILGSLAPFGLWSNGALTAEAVSLFKGFAERTGRVTVHRRNRFETEACQAWFGQSRAGTIMIDDGEGLIFQECRPGAFPMLLLPFLRIGPLPLAKADVAAVKSRPVTSLLADAEVEGEDERLADSLHEAAPDVSRAVIDGDWLLWSVAVTELRESSPRTSDALVVLVTPGGFLGFLPHASDPDALIAMPLRSATIWEALTQMIAPAC
>NZ_CP040503.1|WP_009199908.1|511858_512281_+|hypothetical-protein
MVHLTLPDQWSWRNRLPIDGGLVRKAVGPPGAFKIEPNLILEEISHPGVSLEDWTRQALSKLKRDFPSLRLIDVAQTHLGGVTAHVIWATRTFEFSTTQIEYLLLTEESGVILVFTCSSADFSRLSETFAKCAQSLEAIP
>NZ_CP040503.1|WP_009199907.1|510757_511855_+|hypothetical-protein
MASIDTEFKADLARIEMRLYDLAKLANTLDECFNDIGGVQKRIKISFLGDTASEAEKKVYNYSSDLQDARDDINTYKGYVRDLYDSLTSVKSELDSILADAQNGQLDISGFKITEPEKPGEDSDDKSDSDYKNKKELFNSLKNRSKDIRTTESQAHASFQANCKLFLRGTIDPLAEYYESEISVKIGGSPSVLKRAIDEVQPDIPDDVDSHPNIANATKGFGLTEKAVSIADEVFGFIPGGGVAKTLLKGAGKLSGVLDIGVNVLQGIDAFSAGYQEQYSMASENPENSPLERTLQATLRGTWETGPHVLNVAAGVGGEALSPFGSLLLGTVTEQEGKPLLDSAEGVVESGINSIGIPDWLDWTD
>NZ_CP040503.1|WP_009199906.1|510346_510754_+|hypothetical-protein
MSHDLLKIDFPQIYHAVSISNDIKETVCSLRLPFSSGFDRSQHYDSEVSRVFNKMLRILCEDLNELNINLKTGAQDIENADEGERQKYRFPWQETPGSRSKPDPMHPQPTEPYPGERGGDWTSTPGERNDRERYM
>NZ_CP040503.1|WP_138587222.1|509096_509792_+|hypothetical-protein
MNATEWREIQRVLAGVKGAPGVLDALAPFGLWADGALTPEALGLFRGFAERRGGVTARLRSRSGLVACQAWFSQSRAGTIMIDDGEALVFQQCAPGFFPVFLRGFLRIAPLPLAKSEGAVIEIETVTRLLEAKEDNGGLEGDDERLADSLREAAPEVSRAVVDGDWRLWSVTAGRVREGRRSAGDALVVLATPHGSLGVLPGGRNASIAAVVPLRSSTIWEVLTRMIAPAC
>NZ_CP040503.1|WP_009199903.1|508665_509088_+|hypothetical-protein
MPCVTLPEKWSWRNGPLVAGQDVKEARGPAGSFGVEPSLILNEVRHPGVPLGKWLRNTLKEIERDLPSLHVIDVAQTRLGDVAADVIWATRSLAVNLTQVEYLTLTESSGIILLFTCSSADFAALNEEFARCAQSLETEA
>NZ_CP040503.1|WP_009199902.1|507561_508662_+|hypothetical-protein
MVTIDTEFKSDLASIQQHINDLDSKATTLNDCVSDFSGVRKRVNSAWPSGKTADAADVEMYNYAADLEDACNDIKTYKGYVQSLYDALTPVKDELEAMRGNAEDNDLEIKNNVIQEPEKPGNGASNGDKKDYDFKVRVFNRLKERSKKARDDEASAHSTFQSSCKGVLKAEIDPMAEYYRTPGVLMTGGPPSILSRAVDQAEPEIRDEPKTFSKLGDYAKAIGMPEKVVSIADQFADIVPDGGVGEQVLKGFGKLTGFADIGLNALQGLDTFVHSYQEQKETSSHNPENSPLEVEIQSTMRGAWEANPNFLNAAAGLVGDAGGPLGSFLLGEAAEMAGSGSHWLFDSTAENVINHFGVLDCVDWTD
>NZ_CP040503.1|WP_009199900.1|507081_507330_+|hypothetical-protein
MGAYNPELSPKERLVQSLARGRWKAAPYGAKISIDIASLTAGEALTPAGAFALGQIGGILVDVAHKAVDSKVEENIDAVQWD
>NZ_CP040503.1|WP_009199898.1|505166_506729_-|signal-recognition-particle-protein
MFNTLSDRITGSFKSLRSKGRLSASDVEETISQIRRALLDADVALPVVRSFTAAVREKATGAVASKALNPGQQVVKIVNDELVEILGGETRELDLSRRPAVIMLAGLQGAGKTTLAGKLGRWLRTERNRKVLLVASDLQRPNAVNQLQVVGGQAGVDVWAPEPGNGVGDPVAVARSGLARAEEYGYDVVVVDTAGRLGIDEEMMRQAIDIRAAVNPNEVLFVIDAMIGQDAVATANAFQDGVGFTGVVVSKLDGDTRGGAALSVRGVTGVPIMFASTGEKLTDFEQFHADRMASRILDMGDVLTLIEQAERTWDEQQQAELAEKMSEGSFTLDDFLVQMRQLKRMGSMKKIMGMLPGMGQYREALEAFDESSVGRIEAIVQSMTPAERADVKILNGSRRQRIARGSGTTVQEINSLVERFEQARKMMQQVSRGGGVPGMPGMGGMTGIGGGGRKAKRAAKKKSANKKGRSGNPAKRAAQEREQNQQGQKGKGSSFGVGASRSAGQPGGNPDFEDLARFLK
>NZ_CP040503.1|WP_040323497.1|515074_515434_-|hypothetical-protein
MFILILVVIAILAVVGLLYGMILSSRQEDVRGWVAESVSNWRSENLGVEDFEVQMNDASLGELFAAFPEDETAYYTPEDVSSQINRVVDAEKGAVAQVKPRLPKVKTAKATRARRVKSA
>NZ_CP040503.1|WP_040323610.1|515813_519365_-|chromosome-segregation-protein-SMC
MHLKSLTLRGFKSFATATTLRFEPGINCVVGPNGSGKSNVVDALAWVMGEQGAKNLRGGNMADVIFAGTSKRPALGRAEVSLTIDNSDGVLPIDYTEVTISRTLFRSGGSEYAINGTSCRLLDIQELLSDTGMGREMHVIIGQGKLDEVLKAGAEDRRGFIEEAAGVLKHRRRKEKALRKLESMSGSLARIEDLSAELRRQLGPLARQAEAARKAQVMQAEARDARARLLADDLAQQQARVESHEVDESKLSERRAAGRARVGDAQARLARLEAEAAAASPELAALVERWEKAASLEERFRSLRQLAGERQRSLASAARPFHGERPDDIVRRADRARTEEDELRARAATAQDALTAAISEREEAEDAEHRAERERAALAKAAADKREDAARMAGQISAASSRVEALEAEKRRAGESLEAAKRRADQAKAEVAQLEQDIVAGAQAEDPLTERHEANSAELSAAAAALEAARSRLLEARSQTASWEAKAQALKEALAPEDATAWAWGNCAGIDGLVRESLAVDGGWEAAVEAALAGAAGGLAAESLDSAVDALRAAREAEAGRLHLVHPGGARRESAERLVREAVAAAGLGPDRAVAAGDVVRASGSSADAIASFLAEYALARDLEAARLLIRAGAPAAATLAGDVIDREFARGGEVSRASTLARRAAFESAEREAEKARREGETAEEGVRRCQERLARARSEHEKTGAELAARDSREAAAAARLGVLRQSLSASRSEAESNASRLDALDVELGSKREELEILSARRDAVQADPDDLAERVVRAAESQRAAHERTRECRHRETEARLALRTGEERLRAVAGRADALMKSAQALAERIEREERQARRRERAAELAGRVAEWASRALAVAQRVRESTEKRRKSGEEARELRNSALKAVRRELEKANAALRELEDTAHRHELLRAETRMRYEQLASKSLEELGVEAPVLIEEFGPHRPIPLDEGVEVPYVREEQEKRLKKAESGMARLGKINPLALEEHAALEERQKYLAGQLADLKRTREDLLGIVRTIDRRVQEVMASAIEDVSERFADVFARLFPGGEGRLVLTDDDVLTAGVEIEARPPGKRVKRLSLLSGGERSLTAVAFLVAIFMARPSPFYVMDEVEAALDDVNLSRLIEIFSELQSSSQLLVVTHQKRTMETADTLYGVTMREDGVSTVVSQRLRDVSPA
>NZ_CP040503.1|WP_009199914.1|519589_520231_+|ABC-transporter-permease
MVSFILERRDQILFAAWQHFSLVTQCLLLATVIGTVVAALSYRSSLFTSLTNNVSAIGLTIPSFALIGLLIAPAGFGVLPAVVVVTFYAALPILRNALVGFSGVDRNTVEAARGQGMSKSATFLKVELPLAWPVILAGMRVSAQMSMGIAAISAYVLGPGLGGYIFSGLSRLGGANSFESVLTGVVAIILLAFILDGLLVLLGRLTISRGINV
>NZ_CP040503.1|WP_009199915.1|520223_521582_+|betaine/proline/choline-family-ABC-transporter-ATP-binding-protein
MSENNSANPILGTDSATDDPSITGATIILEEVTKDYGGAQPAVDHLTLEIPAGQTVMFVGPSGCGKTTTLKMINRLIEPTSGRIVINGDDVTQMNGDKLRRHIGYVIQAGGLLPHMTVAENIAIVPKLLGWDKKRISERVDELLDLVSLEPSEYRSRYPKELSGGQQQRVGVARALAADPPVLLMDEPFGAVDPITRQRLQDELIHIQSELHKTVVFVTHDFDEAIKLGDWIVIFNVGGQIMQYDTPDQILANPANEFVEDFIGSGAGLRQLGLARVSAVQLKEAVRARPGEDTREVAKRIRDAKVRHAVVLDLKERPVGWVTPKQLLRTDRVKTKYSDEFPLVGASSSLDDALDAMLVAGSTEALVHGKRGRFLGLITVNTVIRAMEEISSKNPEDTPDAPMGHNAGASTEDADSEDADSEDESQASGSSPAAEAEAPEADATLENSGESV
>NZ_CP040503.1|WP_009199916.1|521578_522328_+|ABC-transporter-permease
MTKARKKVNGLTWRSLLVQPIALLIILIVMLTWRNTADLSETERVTLAPAQLQKLTLEHLNLTVVSAVIVLALAIPIGIILTRKPFRRLSTPVMVLANIGQAAPTVGLVVLFAFWLDFGYKAALASLVVYAFLPVLKNTMVGLRAVDPKLVEAARGMGMSSPAILAKVELPLAVPVMLAGIRTALVLLVGSATLATFVKGGGLGLLITTGVNLSLTRVLVFGSLLVAVLALAVDWAARVVEFVFYPKGL
>NZ_CP040503.1|WP_040323498.1|522330_523314_+|glycine-betaine-ABC-transporter-substrate-binding-protein
MRAKRKGALALLTACLMSLTACGLQPSTSGIKPVGPGKIKPIPGAKGTKVTVGSKAFTEQLILGKIAVYTAEASGFDVVDMTSVPGSQPARQLMVNGKTNLGWEYTGTAWLTYMGHTRGMADQKAQWKAVSDQDRSNGITWGKPSKLNNTYALAVREEYAKEKGIEKLSDIAKLAPADRTLCVDAEFNSRTDGLNPLLSKYGIPRGSSNGVPEQNVSVMDTGTIYTATDRGSCNFGEVFSTDGRIKSLNLRVLKDDLGFFPAYNVSPIYATSLVKKFPKLRAYFDQMAPLLTDDEMREMNLKVDVEGQDPSKVARDWLVSKGFITRK
>NZ_CP040503.1|WP_009199919.1|523501_523783_-|HPr-family-phosphocarrier-protein
MSDKSTGYSREVVVTDDGGLHVRPAAQLAQLVKTLGGNVFIDGVSADSATELMAAGFREGQKVTVSSPNPDKREAVDAIADRIAGGLANARWE
>NZ_CP040503.1|WP_009199920.1|523801_524218_-|nucleoside-diphosphate-kinase
MDSQRIFILVKPDGVERGLVGEILGRIEAKGYKLEDLRFMRAKEEVLRVHYAHLADKPFFPEIVRYMTRGPVVAAIFSGANVIEGVRALAGATNPTQAVPGSIRGDLAREWGHGNIENLIHASDSDENAEKEISLWFN
>NZ_CP040503.1|WP_009199921.1|524243_524447_+|hypothetical-protein
MEGTPIVPRIPGSEGSLGPLSRLLLEASALGVGRVLPPPHRRSTAPGVHAGAAGYRMRTLRADARRH
>NZ_CP040503.1|WP_138587224.1|524443_526066_-|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase
MRGFPGEGELQGGEGMGSALKREPDEQTRDEEAARLAREAAEDEEFDAAVKAIVSSGLVAGPDPSVVADVVADDSKPGPPPDAVAEAERIALDGAVDAVYRSILTRAPEHKVQPSLERVRKALAMLGNPERAFRSIHITGTNGKTSTARMIEALLRERGLRTGRFTSPHLTSVRERMAIDGAAISREDFLAVWEEVNPVVELVDRESTAAGGPRMSFFEVFTVMAYAAFANAPVDVAVVEVGMGGLWDATNVIEADVAVILPVAMDHERWLGHTIEEIAREKVGIVKPGSFVVSAEQEDSVAQIVMDATREAKARLVAEGPSLHLVSRETAVGGQLVTLQTPAARYEDVPLALKGEHQARNAAIALAAAEAFFGGGAFAADVVEHAFMSVSSPGRLEIVRSSPTVVVDAAHNPHGAQATADALREYFPGRLVGVVGMMADKDVEGFLGVLEPVLDAVVVTDIASDRAMDADELADIAGGVFGDGRVFVERNLAEAIDRAAGLAESDDGAPMASPAVVVLGSIQLVAAARTLMGKPGADGA

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Crispr_ID: NZ_CP040503_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040503_5

588692-588776

Orphan

Consensus_repeat	Method
GCTCCCCGCGCGGCTAGAGGCTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040503_5

>merge|NZ_CP040503|5|588692-588776|CRISPRCasFinder
GCTCCCCGCGCGGCTAGAGGCTGGCGACGGACTACGGCTCGCAGGAGCTCCTGCCGAGAACCGCCCCCGCGCGGCTAGAGGCTGG

>NZ_CP040503|5|5|588692-588776|CRISPRCasFinder
GCTCCCCGCGCGGCTAGAGGCTGG	CGACGGACTACGGCTCGCAGGAGCTCCTGCCGAGAAC
CGCCCCCGCGCGGCTAGAGGCTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040503.1\|WP_009199979.1\|590319_590979_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP040503.1\|WP_138587227.1\|591112_592120_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270412
NZ_CP040503.1\|WP_009199971.1\|580747_581656_+\|acyl-CoA-thioesterase-II	unknown	unknown	gnl\|CDD\|224857
NZ_CP040503.1\|WP_009199973.1\|583622_584312_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|239942
NZ_CP040503.1\|WP_009199968.1\|577374_577827_-\|PTS-glucose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|376324
NZ_CP040503.1\|WP_009199974.1\|584525_586052_-\|putative-ATP-binding-membrane-protein	unknown	unknown	gnl\|CDD\|206743
NZ_CP040503.1\|WP_009199987.1\|597518_598214_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009199986.1\|596302_597265_+\|fructokinase	unknown	unknown	gnl\|CDD\|238572
NZ_CP040503.1\|WP_050758854.1\|593668_594751_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP040503.1\|WP_083786193.1\|576956_577388_+\|very-short-patch-repair-endonuclease	unknown	unknown	gnl\|CDD\|238136
NZ_CP040503.1\|WP_009199988.1\|598210_599059_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213197
NZ_CP040503.1\|WP_009199969.1\|577830_578067_-\|PTS-transporter-subunit-EIIB	unknown	unknown	gnl\|CDD\|238130
NZ_CP040503.1\|WP_009199964.1\|573025_575581_+\|aminopeptidase-N	unknown	unknown	gnl\|CDD\|274121
NZ_CP040503.1\|WP_009199975.1\|586063_587638_-\|GTPase-domain-containing-protein	unknown	unknown	gnl\|CDD\|206648
NZ_CP040503.1\|WP_050758855.1\|594882_596274_+\|sugar-porter-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340917
NZ_CP040503.1\|WP_009199970.1\|578292_580455_-\|4-alpha-glucanotransferase	unknown	unknown	gnl\|CDD\|376788
NZ_CP040503.1\|WP_009199978.1\|589661_590339_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP040503.1\|WP_009199989.1\|599055_599493_-\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP040503.1\|WP_009199972.1\|581759_583442_-\|energy-dependent-translational-throttle-protein-EttA	unknown	unknown	gnl\|CDD\|236992
NZ_CP040503.1\|WP_009199983.1\|592802_593648_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187578

Protein	Function_ID	Function_description	E-value
NZ_CP040503.1\|WP_009199979.1\|590319_590979_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.5208e-62
NZ_CP040503.1\|WP_138587227.1\|591112_592120_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270412	cd13694, PBP2_Cysteine, Substrate binding domain of ABC cysteine transporter; the type 2 periplasmic binding protein fold. This subfamily comprises of the periplasmic-binding protein component of ABC transporter specific for cysteine and its closely related proteins. The cysteine-binding domains belong to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.91506e-100
NZ_CP040503.1\|WP_009199971.1\|580747_581656_+\|acyl-CoA-thioesterase-II	gnl\|CDD\|224857	COG1946, TesB, Acyl-CoA thioesterase [Lipid metabolism].	4.06871e-59
NZ_CP040503.1\|WP_009199973.1\|583622_584312_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|239942	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.	1.1469e-15
NZ_CP040503.1\|WP_009199968.1\|577374_577827_-\|PTS-glucose-transporter-subunit-IIA	gnl\|CDD\|376324	pfam00358, PTS_EIIA_1, phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1.	4.82945e-39
NZ_CP040503.1\|WP_009199974.1\|584525_586052_-\|putative-ATP-binding-membrane-protein	gnl\|CDD\|206743	cd11383, YfjP, YfjP GTPase. The Era (E. coli Ras-like protein)-like YfjP subfamily includes several uncharacterized bacterial GTPases that are similar to Era. They generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain.	8.63377e-27
NZ_CP040503.1\|WP_009199986.1\|596302_597265_+\|fructokinase	gnl\|CDD\|238572	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.	1.72824e-52
NZ_CP040503.1\|WP_050758854.1\|593668_594751_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	3.00646e-27
NZ_CP040503.1\|WP_083786193.1\|576956_577388_+\|very-short-patch-repair-endonuclease	gnl\|CDD\|238136	cd00221, Vsr, Very Short Patch Repair (Vsr) Endonuclease. Endonucleases in DNA repair that recognize damaged DNA and cleave the phosphodiester backbone. Vsr endonucleases have a common endonuclease topology that has been tailored for recognition of TG mismatches.	2.33403e-38
NZ_CP040503.1\|WP_009199988.1\|598210_599059_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213197	cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A. This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	9.31004e-44
NZ_CP040503.1\|WP_009199969.1\|577830_578067_-\|PTS-transporter-subunit-EIIB	gnl\|CDD\|238130	cd00212, PTS_IIB_glc, PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	1.04884e-18
NZ_CP040503.1\|WP_009199964.1\|573025_575581_+\|aminopeptidase-N	gnl\|CDD\|274121	TIGR02412, Aminopeptidase_N, aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).	0
NZ_CP040503.1\|WP_009199975.1\|586063_587638_-\|GTPase-domain-containing-protein	gnl\|CDD\|206648	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases). Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions.	3.19353e-12
NZ_CP040503.1\|WP_050758855.1\|594882_596274_+\|sugar-porter-family-MFS-transporter	gnl\|CDD\|340917	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily. This subfamily includes bacterial transporters such as D-xylose-proton symporter (XylE or XylT), arabinose-proton symporter (AraE), galactose-proton symporter (GalP), major myo-inositol transporter IolT, glucose transport protein, putative metabolite transport proteins YfiG, YncC, and YwtG, and similar proteins. The symporters XylE, AraE, and GalP facilitate the uptake of D-xylose, arabinose, and galactose, respectively, across the boundary membrane with the concomitant transport of protons into the cell. IolT is involved in polyol metabolism and myo-inositol degradation into acetyl-CoA. The XylE-like subfamily belongs to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.16803e-123
NZ_CP040503.1\|WP_009199970.1\|578292_580455_-\|4-alpha-glucanotransferase	gnl\|CDD\|376788	pfam02446, Glyco_hydro_77, 4-alpha-glucanotransferase. These enzymes EC:2.4.1.25 transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan.	1.35552e-151
NZ_CP040503.1\|WP_009199978.1\|589661_590339_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.86213e-56
NZ_CP040503.1\|WP_009199989.1\|599055_599493_-\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	2.55651e-18
NZ_CP040503.1\|WP_009199972.1\|581759_583442_-\|energy-dependent-translational-throttle-protein-EttA	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0
NZ_CP040503.1\|WP_009199983.1\|592802_593648_+\|SDR-family-oxidoreductase	gnl\|CDD\|187578	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs. TMR is an atypical NADP-binding protein of the SDR family. It lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Proteins in this subgroup however, are more similar in length to the classical SDRs. TMR was identified as a reducer of triphenylmethane dyes, important environmental pollutants. This subgroup also includes Escherichia coli NADPH-dependent quinine oxidoreductase (QOR2), which catalyzes two-electron reduction of quinone; but is unlikely to play a major role in protecting against quinone cytotoxicity. Atypical SDRs are distinct from classical SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	4.55089e-87

>NZ_CP040503.1|WP_009199975.1|586063_587638_-|GTPase-domain-containing-protein
MMVDNERVKTPHNRSDLADLIARTISALDNARLPLDLPGSMQLNDARKRLRTQLAARILPHLRTDGLPTVTVLGGSSGAGKSTIFNSLLGEDISPASVIRPTTRTPVISVHPKDTKVMEDHAIAEMGRVVVTDKAIPGLILVDAPDLDSVDANNREISRRLLDAADFWLFVTTASRYGDALAWQTLVDANERGMSTAIVLNRVSLEALPKIRADLTERLDAVDMGEVPLLIVPDAGPRDSRLDPDDVTEIRDWLHVIASTRVGEVLVEKMSEAMLPDLRRQLIELSEAVEMQANSVQSLADRAKAEAEQPMSKLASNARSGRYGQGAPTTSWLTFASTGGVLDSLVAGEKPRVSDGRKKSQRDAAAKTVFEGVRGAIEVGFSQAVVTLQGKIDKSWREDMVNTEEYRDEAAKRIDTSEITKDVVEQWLEDLAKAVAAVPENPWFTREGTAALLGSAAGGVNGAETALRTVGLGEALRPARESLAVRLEDGISRVVDAYTSVLDEIPVGNGRQLRLRASEYRDRV
>NZ_CP040503.1|WP_009199974.1|584525_586052_-|putative-ATP-binding-membrane-protein
MNDHAQDSAGATQPDGVFEETPAYGQSPLSREPAMRGVAERIAKLREAIDAGGDAFDPWVAARANEELQAVEARAWAGFGVTVAALAGGTGGGKSTLFNAITGLNFADPGELRPTTEEASACVWNADADAVLDMIGVRPSRRIDYHSILTTGKHDLDSLVLLDLPDHDSVQIGNSVLVDQVLPQVDVLIWVLDPQKYADHLIHESYLAAMRERRDHMIVILNQVDTIPESVVDTLLADVKVLLDRDGLGNVPVYPTSALYRIGLEPIRAKLREAVEGTEAVVATAQAELDAIRRRLSVSVGTREPDVRGEALRRVNRSLYEATGAPAVVQSLRQAGYSLGQTAIANADQPAASMVVATRDAWIAHVRSGLPDRWQEAVTEVIPEPERIRRTIGATIRKVETPKVPRFGALALVALGFILGVAGIVCAALGIPVGAPAARIAFGVAGVVCAAAGWFFGRRAHISAAEKAALAYGDIAMAALYDSAKKLLVDPVAKVLERHREVRESLQV
>NZ_CP040503.1|WP_009199973.1|583622_584312_-|single-stranded-DNA-binding-protein
MSNETYITVRGYAGADPVAYDNGNGLTTVVARVGVTARIRDRETHRYRDGTTSWYSVRCYGDLGLNVSRSVRRGTPVLVRGRLVERAWTAKDGAERTDLSIIADALGVELSSGVATFVKVRHTSVDSNGRPVPEARLEGMSGGAAAAAAPKIAAEGQAPGTSTVVRGGFSAAGKSDPESPFDGVEQAPSFAGRSGGAERDPYDSAPSPCDAEQFAASADPAGVLEKVAS
>NZ_CP040503.1|WP_009199972.1|581759_583442_-|energy-dependent-translational-throttle-protein-EttA
MAEYIYQMIHAYKRVGDKTILDDVTMAFYPGAKIGMVGPNGAGKSTILKIMAGLDEPSNGEARLSPGYSVGILLQEPPLDDDKTVLENVELGRADMIGKLRRFNEIGEEMADPDADFDTLMEEMGKLQTEIDAAGAWDLDAQLQQAMDALRCPPPDAPVNVLSGGERRRVALCRLLLEQPDLLLLDEPTNHLDAESVLWLEQHLAQYPGAVIAVTHDRYFLDHVASWIAEVDRGRLYPYEGNYSTYLETKEKRLEVQGKKDAKLAKRLKDELEWVRSSAKGRQAKSKARLERYEEMAAEAERTRKLDFEEIQIPPGPRLGSIVLEATKLKKGFDGRVLIDGLSFSLPRNGIVGVIGPNGVGKTTLFKTVVGLEPLDAGDLKIGETVQISYVDQTRGGIDPEKTVWQVVSDGLDYIQVGNVEMPSRAYVSAFGFKGPDQQKKAGVLSGGERNRLNLALTLKQGGNLLLLDEPTNDLDVETLSSLENALLQFPGCAVVITHDRWFLDRVATHILAYEGTDEDPAAWYWFEGNFESYEKNKIERLGPEAARPHAVTYRKLTRD
>NZ_CP040503.1|WP_009199971.1|580747_581656_+|acyl-CoA-thioesterase-II
MASFLSIPETDVEPLAKVLGTLRLQRLGGKRYRGESLPQMSKRIYGGQVLAQATMVAADTLPADDDRLAHSITAAFLRPGRIDQPLFFEVTELNDGRSFSTRNVNALQDDHIIFTARISAQLHQPGPSFGEEQPDAPAPETLESSVDFFAAMNTPWGHIVSTTNSLDMRHVGGFIFTAPAKERTNRHLIWFKSRSAMPKGSSKLLQRAMLGYAADQFMLEPVMRATGIYWAHPEASMATLDHSIWWHRNFDLSDWILAELVSPSAQNGRGLTIAKFFQGGKHIATMSQEGMVRLRNVTHTEE
>NZ_CP040503.1|WP_009199970.1|578292_580455_-|4-alpha-glucanotransferase
MTDNAPDRSLLCELAEALGVATEYWGYDGNLKAVSDDTLIKVFAALGVDAGSTDLAWRALADIRLRPWREVVPACSVVRAGVEGKVAVHVPHGESATAEVELEDGRIRALAQAEDFTEPREVDGTLVGQASFVVPPDLPLGYHILRARVGDADSVGSLHSAPLVVAPQRLDSPAERGMTGWGVMTQLYSVRSRDSWGIGDTADLKEMCSLFGDLGGDFVLINPLHSAEPVGHMTPSPYLPVTRRFFNPIYIRPEDIHEVGYMPGARRALVELAGEKVKESSTKDETIDRDASWAAKLQALEVIYSFGRSEARQRAFERFRAAEGQGLEDFAFWCALREKYGEAFPEEFAHPDTPQASRERRELSGRVDFYAWLQWIIDAQLSEAQRDAVESGMGLGIFHDLAVGVHRMGSDVWSLPRAFAQGVAVGAPPDMYNQHGQDWSQPPWRPDALRDMAFAPLRDMVRTVLRHAGGLRVDHVMGLFRLWWIPEGNDPANGTYVRFDHEAMVGILMLEAYRAGAVVVGEDLGNVEPWVRGYLAERGILGTSVLWFETYGDGTFKQPWDLRRETLVTVDTHDLPPAAGYLALEHVDLRSRLGVLTEPVDKVRDDAERERERMLARLREHGLIGEEATEQEIVEAMHRYIAKSPGELLAIALVDAVGERRAQNVPGTNNEYSNWRVPLADGANEVVLIEDLSGNSRLNSLIDAFTTQLYESRGRPEPRS
>NZ_CP040503.1|WP_009199969.1|577830_578067_-|PTS-transporter-subunit-EIIB
MSEKAEAILAGIGGKGNVKDIEACITRIRVEVVDPAQVDEAALREAGAFGVVLQDSVVQVVVGPEADQLSETLESLRK
>NZ_CP040503.1|WP_009199968.1|577374_577827_-|PTS-glucose-transporter-subunit-IIA
MSIAVYAPVSGTVAALTTVPDPVFSAGIVGPGWAVDPFPGGLTVLSPCTGVVKKATPHAYIIVTPEGHNVLVHLGVDTVKLKGQGFLSLVGDGREISAGQPIAVWNTSVAQKAELSICTPVLCMGKMLPTRLSLQAEAKIEAGKPLFTID
>NZ_CP040503.1|WP_083786193.1|576956_577388_+|very-short-patch-repair-endonuclease
MPADSWASSEQTRRSMQANRSRDTGPELAVRQLLHMRGMRYRVDMRPDSSIRRKADIVFTRIKVAVFIDGCFWHGCPTHFTAPKAHAEYWQEKIGKNRRRDADANERLADAGWTVLRFWEHEDPGDVADAIETEVKRARLSRS
>NZ_CP040503.1|WP_009199964.1|573025_575581_+|aminopeptidase-N
MPGTNLTRDEAAKRSSQIQTDSYRIYLDLATGSETTFVSITEIDFTAEAGASTFLDIVAESVNKAVLNGNVLDVNAFADSRFPLDDLAPNNTVRIEATMNYSRTGEGLHRYVDPADGEVYLYSQFEVADARRVFACFEQPDLKADFSLTVDAPDSWTVLSNSPSPEPVATREGIFTWPFTPTERISTYLVSIIAGPYASVKGDVYHSVDGREIPLGIWARKSLVEYVDADEIYEVTKQGFEFYEANYGFPYPFRKYDQIFCPEYNAGAMEHPGNVTLVESYIFRTKPTGALIDRRVITILHEQAHMWFGDLVTMKWWDDLWLNESFAEFMSHLAAVKNTRWKDAWVTFLASEKSGAIQQDLLPSTHPVAADIRDIEDVLVNFDQITYGKGASVLKQLVAWVGLEEFLAGVRSYIAKYAWGNATLADLLAELEATSGRDLSRWTKVWLQEAGANVLSPEIVEKGDVVESFAIRQESDGRSSLRPHRIGVGGFDVIDGKLTRTFSAELDIDGALTEVPELAGAKRPALLLVNDEDLAYAKIRLDEKSLATAVEHLDAFEDRLARTSVVFAAWDMCRDGLMSATDYANIVLKALPDETDGTVLRFILGQLATAVTVYSAPANRETLHNAVASRIFEILEGAEPGSDNQLQVASAAMRLAKTEEQLDRIAGWLEGEGLPEGYVVDAEVRWGIVIALAAAGRIGEAEIAEEYAKDSTSYGQIFSAQARGALPDPAVREKVWKEITGDFESNTVQRNLALGSRRATPESLVPYGARYYEDARAQWDNHSVEIARNMLEYAFPIVLAGRTDLGVDIVALGEKWLEDNKDAAPACVRLVSESVDSAQRAVRAQAVDAGK
>NZ_CP040503.1|WP_009199978.1|589661_590339_-|amino-acid-ABC-transporter-permease
MRNSGIEVLWQGRNFLRLLEGLWTSVSIALLALAISIFFGLFVGIAMTSKRRFLRFLTRAYLEFVRFMPQLVLLFVVYFSLATHTGVNLGGFTTAVIVFSVWGSAEMGDLVRSAVQSIPAHQYASGFALGMTKAQVNLNVILPQTVRRLLPLTINLANRMIMTTSLVVLIGVTEVLKVGQQIIDANRFAYPKAALWVYGAIFLLYFAVCYVISQFSKYLERKWNK
>NZ_CP040503.1|WP_009199979.1|590319_590979_-|amino-acid-ABC-transporter-permease
MNSQVLREYLPYFLEGALVTVRVAAVGIAASLAIGLVCAIIRYLDVPVAKRAVGLYIELSRNTPLIVQLFFIYYGLPKAGVVLSSEASAIIGLSFLGGGYMAEAFRSGFDSVGTIQWESAQSLGMTRVNAMVYVIVPQALSRSVAALVANVIFLVKETSVVSVVALNDLVYVAREKIGNDYDTTEALFLLVAFYIAIILPVSLAGAYLERRARRAEFGN
>NZ_CP040503.1|WP_138587227.1|591112_592120_-|transporter-substrate-binding-domain-containing-protein
MLVFVLAYFGARSLTSKDASDDASGGTSEGTKGAGGSSVKPVGARTPEQIKAAGTVRIGVFGDKAPFGYTDSDGTNVGYDVEYAKRIAKDLGVKLELVPVVADSRVEYLTSGKVDVILANFTVTPERAEKVDFAKPYMKVSLGAVSRKDAPITSESQLSGKKILVVKGTTADSYIQAKHPDWKPAKYDQYSDVYNALADGRGDVWVTDNTEALAFSRQGENKDKFVTGITQLGPVDTIAGAVQKGNAPLRNWLNKELETLGKEKFFHKAYEKTLAPVYGDSAKPDELVVEGGEVDGAGKGEESGKGQESASPKGAAGAAGSEAPDSAAESQAAGK
>NZ_CP040503.1|WP_009199983.1|592802_593648_+|SDR-family-oxidoreductase
MTIAIAGATGNIGRATALSLIDSGVDDVRLLVRSAAKIPDELKGLPYAVCTYADDEAALAALKGVDALLMVSAKESPRRVADHRAFIDAASRARVGSIVYTSFLGAAPEAIFTHARDHFFTEEHIKASGIDWTFLRDSFYLEFFAALLASGEIRGPAGDGACAGVSRSDVARVAAAVLADPGAHAGKTYDLTGPEAFTMAEAARIGTEVSGNPVEYIDETIEQAWASREPYGVPQWEVAAWITTYTAIRAGQLDVVTDSVEKITGRAPLSLSEVLTQQRAS
>NZ_CP040503.1|WP_050758854.1|593668_594751_+|alpha/beta-hydrolase
MRFSLNPAIDRLRDLRTSRKERRARKRERIKTRSRPYRVLRGTGVFLLRSFVAVTAASLIFNAVSQPPEYLEATTGHTVKVGSADVHYEKWGGTGQAVVLLPGFAGSSVAYDYAGPKLAAKGYAVYAVDLPGFGYTRGGDARDIRRQADLVAGFSKKMGLDRPIVVGHSMGASVAGGVGLWHPQSTGGVIFADGDGLDIQVPRRIPGWMAKSPYITSLYRIGSRWTWLDQKIFKRSCGSTCTMFDGEKGKGFTKRITRPLTSRSAERIISDTMKEFTILHLTPKQIQSISVPSSIIWGSEDVSGGYLVRTRQNLGNPPERIIRGAGHQVMLSHPDEFASSVDSLTRQMLENKRAAQHSRS
>NZ_CP040503.1|WP_050758855.1|594882_596274_+|sugar-porter-family-MFS-transporter
MSSRPISAPRERVNALVIRSAVVAAIGGLIFGFDTAVISGANDALEDRFKLDDFGIGLTVAIATVGTIFGALIGGRLADRYGRKNLLFAIGILYVLGSLGTAVAWTHAVLLAFRFVGGIGVGLSSVCAPIYTAEIAPARIRGRLVGLVQFNIVLGILLAYLSNYIIQQTITDPMEAWRWMLGVMVVPSAIFLLLLFSVPETPRWLMSRGRDKEAVEISRRLCSTRAESEEQIAEIRQQLAADRTKGSLSDFFSRRYRKVVFFAFIIAMCNQLSGINAILYYAPKVLEKAGASEDQRYLMSVAVGVMNLIATMAALTVIDKIGRRSLMIVGSIGYLLSLGFLTGVMFMYEGHFDSTSSMLVLVGLLFFIAAHAFGQGSVIWVFISEIFPNKVRGLGQSFGSLTHWVFAAITTFAFPTVIGSWGGGFAFLIFFVCMCGQLFWVLKMMPETKGVPLEEMESKLGLK
>NZ_CP040503.1|WP_009199986.1|596302_597265_+|fructokinase
MTTANKPVLCLGEALIDVVIRGEESAEHVGGSPLNVASVLANLDRPALIGAWWGKDRHGKLIEDFAAEHKVGVVPGSNGAFKTSLAYALLDELGRARYEFDLTWEVPPLPHPGDIAHLHTGSLAATLEPGGSAVLQAVKDFSAQGTVSYDPNARPAIMESPEKVIGRIEEIVALSDVVKASDEDLAWLYGKETPVEEVMRRWSKLGPGLVVVTRGPWGSYARLAAERDMLVVDPLTIDVVDTVGAGDSFMGGLLSGLLDAGFLGSIEAKARLREARWSEILPALHRGTVTSGLTVSKAGAYAPSATEVADVVKSDPKLAS
>NZ_CP040503.1|WP_009199987.1|597518_598214_-|hypothetical-protein
MNVWTIAKIGVKETLRRPLALFLVFLLPLVFYLVRLNVQWQAIRLLAIGVGWAVATLSLFSGVVSSQLDKRLCVMGARPSVLFAGRHLAQAGIGLAVSCVYFAVVATTQDVVRLPAVGLLLVTTVLVCVPLGALMSFAVARELEGALALLSIMALQLLVDPDGSKAKLLPLWSTRKISAYAIGAEDAGALREGMLHFLFVFALCALAAWGASVMRLGIVRASGLPAAAQES
>NZ_CP040503.1|WP_009199988.1|598210_599059_-|ATP-binding-cassette-domain-containing-protein
MSEDRALETEGWALRLERGLAGAGIDGRRARRLAEEAVAEANDYALPPEEVYGPAEAYARELARAARAAVREERRPDESRSGAPVLRLRDVSKRYGRKTVVRDVSLELRSGQIGAIVGANGSGKSTLLKICAGLVRATSGSVERVENVGYVPQAGGLSPLLTASEHFRLFGSLDGKNERESLVAGTRLAQSLGWRPNRKLGAARLSGGTQQKLNVVLGGINRPRLILLDEPYQGFDQGTYTDFWEQLFSWREAGAGVLVVTHILHDLDGVDWTCELHPQEES
>NZ_CP040503.1|WP_009199989.1|599055_599493_-|PadR-family-transcriptional-regulator
MDVKTQQWLHGFLDFCLLGLIDAQRDYGRGLAERLARSGFGEIPGGTLYPALVRMERQGLIAASKEPSVAGPPRKYYETTAKGREAFRELVETWEQFKAAVEATVDGKAIPREAIVRQATIRGDEATGREEACRDEPIGREGDWR

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Crispr_ID: NZ_CP040503_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040503_6

597361-597510

Orphan

Consensus_repeat	Method
CGCCGGCCGCCGGACGTCGCCCC	CRISPRCasFinder

2 spacers

DEDDh

The CRISPR arrays of NZ_CP040503_6

>merge|NZ_CP040503|6|597361-597510|CRISPRCasFinder
CGCCGGCCGCCGGACGTCGCCCCTTCGCTCGGCGCCACACATCTTTGACGCCGGCCGCCGGACGTCGCCTCGCCGCCCGGCGGCCAAGGCTTCCCTAGCCGTTCAGTTGGAACTTTCTCTCGCTGCGTCCCAGCCTTCCGACGTCGCCCC

>NZ_CP040503|6|6|597361-597510|CRISPRCasFinder
CGCCGGCCGCCGGACGTCGCCCC	TTCGCTCGGCGCCACACATCTTTGA
CGCCGGCCGCCGGACGTCGCCTC	GCCGCCCGGCGGCCAAGGCTTCCCTAGCCGTTCAGTTGGAACTTTCTCTCGCTGCG
TCCCAGCCTTCCGACGTCGCCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040503.1\|WP_009199979.1\|590319_590979_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP040503.1\|WP_009199992.1\|604139_604886_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225767
NZ_CP040503.1\|WP_009199993.1\|605382_606210_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_050758868.1\|608501_609326_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224312
NZ_CP040503.1\|WP_009199983.1\|592802_593648_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187578
NZ_CP040503.1\|WP_009199987.1\|597518_598214_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009199991.1\|602466_604086_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|184957
NZ_CP040503.1\|WP_009199986.1\|596302_597265_+\|fructokinase	unknown	unknown	gnl\|CDD\|238572
NZ_CP040503.1\|WP_009199976.1\|588063_588708_+\|oligoribonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235429
NZ_CP040503.1\|WP_009199978.1\|589661_590339_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP040503.1\|WP_009199975.1\|586063_587638_-\|GTPase-domain-containing-protein	unknown	unknown	gnl\|CDD\|206648
NZ_CP040503.1\|WP_009199988.1\|598210_599059_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213197
NZ_CP040503.1\|WP_050758854.1\|593668_594751_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP040503.1\|WP_009199995.1\|606555_608277_-\|DUF2326-domain-containing-protein	unknown	unknown	gnl\|CDD\|227612
NZ_CP040503.1\|WP_138587227.1\|591112_592120_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270412
NZ_CP040503.1\|WP_050758855.1\|594882_596274_+\|sugar-porter-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340917
NZ_CP040503.1\|WP_138587226.1\|588765_589650_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP040503.1\|WP_083786194.1\|608263_608518_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009199990.1\|599719_602140_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP040503.1\|WP_009199989.1\|599055_599493_-\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609

Protein	Function_ID	Function_description	E-value
NZ_CP040503.1\|WP_009199979.1\|590319_590979_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.5208e-62
NZ_CP040503.1\|WP_009199992.1\|604139_604886_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|225767	COG3226, COG3226, Uncharacterized protein conserved in bacteria [Function unknown].	2.93009e-18
NZ_CP040503.1\|WP_050758868.1\|608501_609326_-\|hypothetical-protein	gnl\|CDD\|224312	COG1394, NtpD, Archaeal/vacuolar-type H+-ATPase subunit D [Energy production and conversion].	0.00203926
NZ_CP040503.1\|WP_009199983.1\|592802_593648_+\|SDR-family-oxidoreductase	gnl\|CDD\|187578	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs. TMR is an atypical NADP-binding protein of the SDR family. It lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Proteins in this subgroup however, are more similar in length to the classical SDRs. TMR was identified as a reducer of triphenylmethane dyes, important environmental pollutants. This subgroup also includes Escherichia coli NADPH-dependent quinine oxidoreductase (QOR2), which catalyzes two-electron reduction of quinone; but is unlikely to play a major role in protecting against quinone cytotoxicity. Atypical SDRs are distinct from classical SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	4.55089e-87
NZ_CP040503.1\|WP_009199995.1\|606555_608277_-\|DUF2326-domain-containing-protein	gnl\|CDD\|227612	COG5293, COG5293, Predicted ATPase [General function prediction only].	7.55868e-50
NZ_CP040503.1\|WP_009199991.1\|602466_604086_-\|MFS-transporter	gnl\|CDD\|184957	PRK14995, PRK14995, SmvA family efflux MFS transporter.	1.26044e-84
NZ_CP040503.1\|WP_009199986.1\|596302_597265_+\|fructokinase	gnl\|CDD\|238572	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.	1.72824e-52
NZ_CP040503.1\|WP_009199976.1\|588063_588708_+\|oligoribonuclease	gnl\|CDD\|235429	PRK05359, PRK05359, oligoribonuclease; Provisional.	6.98062e-100
NZ_CP040503.1\|WP_009199978.1\|589661_590339_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.86213e-56
NZ_CP040503.1\|WP_009199975.1\|586063_587638_-\|GTPase-domain-containing-protein	gnl\|CDD\|206648	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases). Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions.	3.19353e-12
NZ_CP040503.1\|WP_009199988.1\|598210_599059_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213197	cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A. This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	9.31004e-44
NZ_CP040503.1\|WP_050758854.1\|593668_594751_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	3.00646e-27
NZ_CP040503.1\|WP_138587227.1\|591112_592120_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270412	cd13694, PBP2_Cysteine, Substrate binding domain of ABC cysteine transporter; the type 2 periplasmic binding protein fold. This subfamily comprises of the periplasmic-binding protein component of ABC transporter specific for cysteine and its closely related proteins. The cysteine-binding domains belong to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.91506e-100
NZ_CP040503.1\|WP_050758855.1\|594882_596274_+\|sugar-porter-family-MFS-transporter	gnl\|CDD\|340917	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily. This subfamily includes bacterial transporters such as D-xylose-proton symporter (XylE or XylT), arabinose-proton symporter (AraE), galactose-proton symporter (GalP), major myo-inositol transporter IolT, glucose transport protein, putative metabolite transport proteins YfiG, YncC, and YwtG, and similar proteins. The symporters XylE, AraE, and GalP facilitate the uptake of D-xylose, arabinose, and galactose, respectively, across the boundary membrane with the concomitant transport of protons into the cell. IolT is involved in polyol metabolism and myo-inositol degradation into acetyl-CoA. The XylE-like subfamily belongs to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.16803e-123
NZ_CP040503.1\|WP_138587226.1\|588765_589650_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.4583e-139
NZ_CP040503.1\|WP_009199990.1\|599719_602140_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	2.22654e-88
NZ_CP040503.1\|WP_009199989.1\|599055_599493_-\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	2.55651e-18

>NZ_CP040503.1|WP_009199986.1|596302_597265_+|fructokinase
MTTANKPVLCLGEALIDVVIRGEESAEHVGGSPLNVASVLANLDRPALIGAWWGKDRHGKLIEDFAAEHKVGVVPGSNGAFKTSLAYALLDELGRARYEFDLTWEVPPLPHPGDIAHLHTGSLAATLEPGGSAVLQAVKDFSAQGTVSYDPNARPAIMESPEKVIGRIEEIVALSDVVKASDEDLAWLYGKETPVEEVMRRWSKLGPGLVVVTRGPWGSYARLAAERDMLVVDPLTIDVVDTVGAGDSFMGGLLSGLLDAGFLGSIEAKARLREARWSEILPALHRGTVTSGLTVSKAGAYAPSATEVADVVKSDPKLAS
>NZ_CP040503.1|WP_050758855.1|594882_596274_+|sugar-porter-family-MFS-transporter
MSSRPISAPRERVNALVIRSAVVAAIGGLIFGFDTAVISGANDALEDRFKLDDFGIGLTVAIATVGTIFGALIGGRLADRYGRKNLLFAIGILYVLGSLGTAVAWTHAVLLAFRFVGGIGVGLSSVCAPIYTAEIAPARIRGRLVGLVQFNIVLGILLAYLSNYIIQQTITDPMEAWRWMLGVMVVPSAIFLLLLFSVPETPRWLMSRGRDKEAVEISRRLCSTRAESEEQIAEIRQQLAADRTKGSLSDFFSRRYRKVVFFAFIIAMCNQLSGINAILYYAPKVLEKAGASEDQRYLMSVAVGVMNLIATMAALTVIDKIGRRSLMIVGSIGYLLSLGFLTGVMFMYEGHFDSTSSMLVLVGLLFFIAAHAFGQGSVIWVFISEIFPNKVRGLGQSFGSLTHWVFAAITTFAFPTVIGSWGGGFAFLIFFVCMCGQLFWVLKMMPETKGVPLEEMESKLGLK
>NZ_CP040503.1|WP_050758854.1|593668_594751_+|alpha/beta-hydrolase
MRFSLNPAIDRLRDLRTSRKERRARKRERIKTRSRPYRVLRGTGVFLLRSFVAVTAASLIFNAVSQPPEYLEATTGHTVKVGSADVHYEKWGGTGQAVVLLPGFAGSSVAYDYAGPKLAAKGYAVYAVDLPGFGYTRGGDARDIRRQADLVAGFSKKMGLDRPIVVGHSMGASVAGGVGLWHPQSTGGVIFADGDGLDIQVPRRIPGWMAKSPYITSLYRIGSRWTWLDQKIFKRSCGSTCTMFDGEKGKGFTKRITRPLTSRSAERIISDTMKEFTILHLTPKQIQSISVPSSIIWGSEDVSGGYLVRTRQNLGNPPERIIRGAGHQVMLSHPDEFASSVDSLTRQMLENKRAAQHSRS
>NZ_CP040503.1|WP_009199983.1|592802_593648_+|SDR-family-oxidoreductase
MTIAIAGATGNIGRATALSLIDSGVDDVRLLVRSAAKIPDELKGLPYAVCTYADDEAALAALKGVDALLMVSAKESPRRVADHRAFIDAASRARVGSIVYTSFLGAAPEAIFTHARDHFFTEEHIKASGIDWTFLRDSFYLEFFAALLASGEIRGPAGDGACAGVSRSDVARVAAAVLADPGAHAGKTYDLTGPEAFTMAEAARIGTEVSGNPVEYIDETIEQAWASREPYGVPQWEVAAWITTYTAIRAGQLDVVTDSVEKITGRAPLSLSEVLTQQRAS
>NZ_CP040503.1|WP_138587227.1|591112_592120_-|transporter-substrate-binding-domain-containing-protein
MLVFVLAYFGARSLTSKDASDDASGGTSEGTKGAGGSSVKPVGARTPEQIKAAGTVRIGVFGDKAPFGYTDSDGTNVGYDVEYAKRIAKDLGVKLELVPVVADSRVEYLTSGKVDVILANFTVTPERAEKVDFAKPYMKVSLGAVSRKDAPITSESQLSGKKILVVKGTTADSYIQAKHPDWKPAKYDQYSDVYNALADGRGDVWVTDNTEALAFSRQGENKDKFVTGITQLGPVDTIAGAVQKGNAPLRNWLNKELETLGKEKFFHKAYEKTLAPVYGDSAKPDELVVEGGEVDGAGKGEESGKGQESASPKGAAGAAGSEAPDSAAESQAAGK
>NZ_CP040503.1|WP_009199979.1|590319_590979_-|amino-acid-ABC-transporter-permease
MNSQVLREYLPYFLEGALVTVRVAAVGIAASLAIGLVCAIIRYLDVPVAKRAVGLYIELSRNTPLIVQLFFIYYGLPKAGVVLSSEASAIIGLSFLGGGYMAEAFRSGFDSVGTIQWESAQSLGMTRVNAMVYVIVPQALSRSVAALVANVIFLVKETSVVSVVALNDLVYVAREKIGNDYDTTEALFLLVAFYIAIILPVSLAGAYLERRARRAEFGN
>NZ_CP040503.1|WP_009199978.1|589661_590339_-|amino-acid-ABC-transporter-permease
MRNSGIEVLWQGRNFLRLLEGLWTSVSIALLALAISIFFGLFVGIAMTSKRRFLRFLTRAYLEFVRFMPQLVLLFVVYFSLATHTGVNLGGFTTAVIVFSVWGSAEMGDLVRSAVQSIPAHQYASGFALGMTKAQVNLNVILPQTVRRLLPLTINLANRMIMTTSLVVLIGVTEVLKVGQQIIDANRFAYPKAALWVYGAIFLLYFAVCYVISQFSKYLERKWNK
>NZ_CP040503.1|WP_138587226.1|588765_589650_-|ATP-binding-cassette-domain-containing-protein
MAPRSGADRHADASSPGSASPADVARAEAASADKGEAARTPALSVRDVVKVYDGDFTALDGVSFDVARGEVIVVVGPSGCGKSTLLRTLNGLEPIQGGVIEFNGEKVPSKSLPWNLLRQRIGMVFQSYELFPHLNVLENLLLGPSKVLGEKRAESARRAGELLKRVGLLDKAESFPRQLSGGQKQRVAIVRALMMKPEILLLDEVTASLDPEMVREVLDVVLELARDGMTMVIVTHEMGFARAIADRVIFMDAGKIVEESAPKEFFSHPATERAKKFLDIFSYEEIAGEWCSSL
>NZ_CP040503.1|WP_009199976.1|588063_588708_+|oligoribonuclease
MNNPIVWIDCEMTGLDLNVDELVEVAVVITDSELNPVDEGIDVLIRPSDAAVEHMGDFVRQMHTASGLIEEWKNGLTLEEAREQVLAYIRRHIPEAQKAPLGGNSVGTDKAFLEKYMPDVVAHLHYRLIDVSSLKELAKRWYPRTYFAAPEKTGNHRALGDIYDSIDELHYYRDALMPAGDGLTTDEARSLGTRYAGTTARLVAKANAAGSPRG
>NZ_CP040503.1|WP_009199975.1|586063_587638_-|GTPase-domain-containing-protein
MMVDNERVKTPHNRSDLADLIARTISALDNARLPLDLPGSMQLNDARKRLRTQLAARILPHLRTDGLPTVTVLGGSSGAGKSTIFNSLLGEDISPASVIRPTTRTPVISVHPKDTKVMEDHAIAEMGRVVVTDKAIPGLILVDAPDLDSVDANNREISRRLLDAADFWLFVTTASRYGDALAWQTLVDANERGMSTAIVLNRVSLEALPKIRADLTERLDAVDMGEVPLLIVPDAGPRDSRLDPDDVTEIRDWLHVIASTRVGEVLVEKMSEAMLPDLRRQLIELSEAVEMQANSVQSLADRAKAEAEQPMSKLASNARSGRYGQGAPTTSWLTFASTGGVLDSLVAGEKPRVSDGRKKSQRDAAAKTVFEGVRGAIEVGFSQAVVTLQGKIDKSWREDMVNTEEYRDEAAKRIDTSEITKDVVEQWLEDLAKAVAAVPENPWFTREGTAALLGSAAGGVNGAETALRTVGLGEALRPARESLAVRLEDGISRVVDAYTSVLDEIPVGNGRQLRLRASEYRDRV
>NZ_CP040503.1|WP_009199987.1|597518_598214_-|hypothetical-protein
MNVWTIAKIGVKETLRRPLALFLVFLLPLVFYLVRLNVQWQAIRLLAIGVGWAVATLSLFSGVVSSQLDKRLCVMGARPSVLFAGRHLAQAGIGLAVSCVYFAVVATTQDVVRLPAVGLLLVTTVLVCVPLGALMSFAVARELEGALALLSIMALQLLVDPDGSKAKLLPLWSTRKISAYAIGAEDAGALREGMLHFLFVFALCALAAWGASVMRLGIVRASGLPAAAQES
>NZ_CP040503.1|WP_009199988.1|598210_599059_-|ATP-binding-cassette-domain-containing-protein
MSEDRALETEGWALRLERGLAGAGIDGRRARRLAEEAVAEANDYALPPEEVYGPAEAYARELARAARAAVREERRPDESRSGAPVLRLRDVSKRYGRKTVVRDVSLELRSGQIGAIVGANGSGKSTLLKICAGLVRATSGSVERVENVGYVPQAGGLSPLLTASEHFRLFGSLDGKNERESLVAGTRLAQSLGWRPNRKLGAARLSGGTQQKLNVVLGGINRPRLILLDEPYQGFDQGTYTDFWEQLFSWREAGAGVLVVTHILHDLDGVDWTCELHPQEES
>NZ_CP040503.1|WP_009199989.1|599055_599493_-|PadR-family-transcriptional-regulator
MDVKTQQWLHGFLDFCLLGLIDAQRDYGRGLAERLARSGFGEIPGGTLYPALVRMERQGLIAASKEPSVAGPPRKYYETTAKGREAFRELVETWEQFKAAVEATVDGKAIPREAIVRQATIRGDEATGREEACRDEPIGREGDWR
>NZ_CP040503.1|WP_009199990.1|599719_602140_-|serine/threonine-protein-kinase
MRRLGSRYILDERIGKGAQGEVWIGRASSEGSQDTVPEVYAFKILRTDLAEEPGFVERFIKERSTLLRVSSPYVIGVHDFVVEGTTLALVMDYVPGGDLRGYLKESGPLPPAEAAQLGASVAEGLSAVHNAGILHRDVKPANILLDFSTTPMTPRVVDFGIARIIDVAGASHLTGVIGTPLYMSPEVLSGEVPGTQADVYSLGIVLYEVVCGVTPFVGSISELLGQHMHRTPGRPGGVPDRMWGLIASMLVKTPDKRPTATDVARELRAMASELENVPAATKLAKPPPSTPSTELADMGVSPAAGHYPQAAFASASPHFSASSPASYIPNRSSQSAPEAASSYAGPYTVPYSRTQTGAYGSQTQTGAYGSQTFPFTPQTAGDARGPGRSRRRKKRSKKTIALVSLLSVALVGAGVWGISMLTHEEKTPEWYVANLPAGKKFVEEHRISKAYKVAVSPNRSLVAANAVSDWTLYSLSGTGTSKIAKKDCYDNKSGFWNNSSFLCHTGNSATVIRSNGNIYKPPGPSSHNLVGTDGEITVMISDDNSGDLVGIDSSGKEVWRALGKYSEAIVQNGFILSYDTEKKSLRILSVASGEVLKSKDAEDDFESLSDNPHPLGFGIDAGTKAFYQVESGSYTIWDEKGERKFGGKAKVTTNNWVISSPNVSPEDLKDLFEASPATEAVNIRGESDIRVARVDGANCRVEIDGVRFRVPKVNDQSRCYVDILGLSGDDDTLLLESSNASDERRHWKTGTVARDNEGKGKVVAYSLSSGNELWRADGSFVALLGGNRMAIRPNSDEIILGTVRDE
>NZ_CP040503.1|WP_009199991.1|602466_604086_-|MFS-transporter
MTEKVERLQSTTDEGIRSAGSEGARPKAGSAPTQSLSTARRWMATVVLSASVLVITMDMTILNIALPDLAKDLKPSATQQLWIVDVYSLVLAGLLISWAAVGDRWGRKRMLMLGYAIFGVASLLVFFADSPGIVIAVRAFLGVGGAMIMPTTLSLIRVIFTNSKERATALSIWAAVSGLGSAIGPLLGGYLLEHFSWHSAFLVNVPLMAAAVIAGMLLLPESRVEKPGKLDPLAVVLSLVGMTLLVWSIKEFGDKASLLLPAPWIAFAIAAVALGAFARRCLRSDEPLLDLALFRNRQFSAGILAALGTTFSLLAAILLISQWLQLVQGDTPVQAGIHLIPAAVAGAVASIAAPPLSRVFGARAVLAGGLAVAGLGMVYVGLRGAGLSMAAVMAALVLVGSGTGTLAIASAMVMGGSPEDRAGNAGALEETSYELGGVMGVAVLGSVSALVYKAEIVADPLFSQLREYSADVANQAKESLGAAVTIANETNIPELAERAGAAFTRSFEVTGAVGGALMIAVAAAVFFLTPKGTKITGSH
>NZ_CP040503.1|WP_009199992.1|604139_604886_-|TetR-family-transcriptional-regulator
MKGNGQPRSARGQPPKAEGEAPEAGGKGKREFAQEGSSAKERGPVGERLDRLCSLTSRKRDPEARRRAILNAAIDVIVEKGAAALTHRAVAARAGVSLGSTTKYFSSIEDLRENAMDALVREMDAGVDAFESELEACDDVESYCIGLAYEYLRDVRQVRADVALLNAGARDDGLREIALRNPDRLIAALAPHFGAERAMALELCLEGAVVHSALRSTPIDKEVIERIFRGIISAPWPGQTEARERRAL
>NZ_CP040503.1|WP_009199993.1|605382_606210_+|hypothetical-protein
MERNRSQPGRSARRARFGREAKEETDTMATDTAIKGAWAGASASTAWAKSKRGEGTRTGVRAAARAGAGVGAPRRDWVPLIDAATTRVVPLGFIFYLLATTLYLFYWGQPLGTTEMWARTLLWNVWPWLGLMCLALTWAWASRKDPRHTWLRRLMNRAPLFGKKAAILGAALGLMFLLQAAANDVELALDLQAGPQGETGVVCTEFKEWPSYKNGDAKTTFVLRHANGRDETFEFTSRLGVWDDGPRGSIKRLCSSQESFTLWRWARTGVIADVE
>NZ_CP040503.1|WP_009199995.1|606555_608277_-|DUF2326-domain-containing-protein
MFLYELGSSNCRFKTLRFHEGMNVLLADKTQGSKLGDSRNGAGKTSFVRILRYLLGGRLDDSLKSAELAHFSFWGDLEMENAVDDLTRGVADVKRIERAVKPQTKVRVDGVSTSIDAWKLDVGQLFRLPADANRPTVGQLVSQLVRDYFGDPLKTFAAESAWESGARIGYLLGFTPEILAKAGEASALEKNRKALKKAIAEGALGNVSMNEPELRARLAKLRQRRLRLESKLSGFRVDEQYAEHQAEADRLTQAIRDLNDEGLVLEQRKRDLELAMQEERPTASSADMAKQLETMYVEIGIVLPDVVARRFEEVADFHSSVVRNRRLYLESERVSVLDRLKAIEAERRALDRRRADVMNLLNDSMALETFRNAERELAEVDSTVADLERRLELVQSVNDAGLRLRSITAEAEASVRTEMAEREEFIEEAISLFQQLGEEIYDDRDVSLLIDANKGILKVTPEIDGDASSGIRGVKTFLLDVVCLVMAIKAGRAPRILVHDSLLFDSMDDRQVASCLNIGARLADDVGFQYIVTLNSDRLQAAEAEGFDRRDYAIDPVLTDAGEDGGLFGFRFK
>NZ_CP040503.1|WP_083786194.1|608263_608518_-|hypothetical-protein
MLLPTKGIRPERALLTLGAKLLSLLDSPTTVSGLWERFSRETRSGHAGGAITFDWFAMALSMLFAIRAVAWNASDQLVRHHVSV
>NZ_CP040503.1|WP_050758868.1|608501_609326_-|hypothetical-protein
MGSLGDGGCDGIAENGSILYACYGQRAVTNLDQKTKKKLEDDFTRAYAFWPEFRVWRFVTNASFGPASTDSLLKLRKSHGPDSKRPIALELWKAPDDLWWNAVSKLAWDQLDEIIPGSPHAQNVELDDLVELIEMLEGVEGGDVDHLLEDIRPVSSTKMDFNRLPRTTRTEFDEGRLLSLRIDKWFAGQPDPGLRDAKARRFRQIYEEARRVTSDVREIVRRVYVALGGPDFDMWTKRANAVYAVTVYFFDSCDIFEEPPADFSIGETGDVASD

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Crispr_ID: NZ_CP040503_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040503_7

628527-629459

TypeII

Consensus_repeat	Method
TGAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	PILER-CR
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	CRISPRCasFinder
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	CRT
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	PILER-CR

14 spacers

cas2,cas1,cas9

The CRISPR arrays of NZ_CP040503_7

>merge|NZ_CP040503|7|628527-629459|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
TGAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGCTGTCGCGCATCGTCGCAGCGTACAGCTTGAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGCAAGCTTATAAGAGTCAACAAAATGTTGAGAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGCGCACACCGTCGAACACGCCCGCCTTCTCGAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGCCACTGACCAAAGCGGTCTCCTTGTCCCAGAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGCACCTTGTGCGCAACCTCGTGTACGAGAGGAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGCTCTAATTGGACGCGTACGCCAGACGTTGGAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGCGAGCGGGTTATATTGATCGAACCTTTCAGAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGCTTCATTCGCAGCAGGGCCGCCTCGTTCAGAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGCTGAGTTGATTCTCAATCACGGGCCTTTAGAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGCACAGTCATACAGGCTCGCTTTGAGCAACGAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGCCGAAAATCCTCCATCGCGGCCCGCTGCCGAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGCATGTTCCTGCCGGGAAGGGTCAGGTGTTGAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGCCTACGGACGGGACGGGGCTCTGCCTGCTGAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGCCATGTTCTATAGCGGTGCGAAGGTCGAGGAAGTCTACCAGGGGACAGACAACTGACCAGCCCGC

>NZ_CP040503|7|1|628527-628691|PILER-CR
TGAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	TGTCGCGCATCGTCGCAGCGTACAGCT
TGAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	AAGCTTATAAGAGTCAACAAAATGTTG
AGAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGCGCACACCGTCGAACACGCCCGCCTTCTCGAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGCCACTGACCAAAGCGGTCTCCTTGTCCCAGAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	ACCTTGTGCGCAACCTCGTGTACGAGAG
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	TCTAATTGGACGCGTACGCCAGACGTTG
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	GAGCGGGTTATATTGATCGAACCTTTCA
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	TTCATTCGCAGCAGGGCCGCCTCGTTCA
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	TGAGTTGATTCTCAATCACGGGCCTTTA
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	ACAGTCATACAGGCTCGCTTTGAGCAAC
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	CGAAAATCCTCCATCGCGGCCCGCTGCC
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	ATGTTCCTGCCGGGAAGGGTCAGGTGTT
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	CTACGGACGGGACGGGGCTCTGCCTGCT


>NZ_CP040503|7|7|628528-629395|CRISPRCasFinder
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	TGTCGCGCATCGTCGCAGCGTACAGCTT
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	AAGCTTATAAGAGTCAACAAAATGTTGA
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	GCACACCGTCGAACACGCCCGCCTTCTC
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	CACTGACCAAAGCGGTCTCCTTGTCCCA
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	ACCTTGTGCGCAACCTCGTGTACGAGAG
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	TCTAATTGGACGCGTACGCCAGACGTTG
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	GAGCGGGTTATATTGATCGAACCTTTCA
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	TTCATTCGCAGCAGGGCCGCCTCGTTCA
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	TGAGTTGATTCTCAATCACGGGCCTTTA
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	ACAGTCATACAGGCTCGCTTTGAGCAAC
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	CGAAAATCCTCCATCGCGGCCCGCTGCC
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	ATGTTCCTGCCGGGAAGGGTCAGGTGTT
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	CTACGGACGGGACGGGGCTCTGCCTGCT
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC

>NZ_CP040503|7|1|628528-629459|CRT
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	TGTCGCGCATCGTCGCAGCGTACAGCTT
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	AAGCTTATAAGAGTCAACAAAATGTTGA
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	GCACACCGTCGAACACGCCCGCCTTCTC
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	CACTGACCAAAGCGGTCTCCTTGTCCCA
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	ACCTTGTGCGCAACCTCGTGTACGAGAG
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	TCTAATTGGACGCGTACGCCAGACGTTG
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	GAGCGGGTTATATTGATCGAACCTTTCA
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	TTCATTCGCAGCAGGGCCGCCTCGTTCA
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	TGAGTTGATTCTCAATCACGGGCCTTTA
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	ACAGTCATACAGGCTCGCTTTGAGCAAC
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	CGAAAATCCTCCATCGCGGCCCGCTGCC
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	ATGTTCCTGCCGGGAAGGGTCAGGTGTT
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	CTACGGACGGGACGGGGCTCTGCCTGCT
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	CATGTTCTATAGCGGTGCGAAGGTCGAG
GAAGTCTACCAGGGGACAGACAACTGACCAGCCCGC

>NZ_CP040503|7|2|628784-629395|PILER-CR
	TGTCGCGCATCGTCGCAGCGTACAGCT
TGAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	AAGCTTATAAGAGTCAACAAAATGTTG
AGAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGCGCACACCGTCGAACACGCCCGCCTTCTCGAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGCCACTGACCAAAGCGGTCTCCTTGTCCCAGAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	ACCTTGTGCGCAACCTCGTGTACGAGAG
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	TCTAATTGGACGCGTACGCCAGACGTTG
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	GAGCGGGTTATATTGATCGAACCTTTCA
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	TTCATTCGCAGCAGGGCCGCCTCGTTCA
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	TGAGTTGATTCTCAATCACGGGCCTTTA
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	ACAGTCATACAGGCTCGCTTTGAGCAAC
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	CGAAAATCCTCCATCGCGGCCCGCTGCC
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	ATGTTCCTGCCGGGAAGGGTCAGGTGTT
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC	CTACGGACGGGACGGGGCTCTGCCTGCT
GAAGTCTATCAGGGGGAAGGAGAACTGATTCCCAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040503.1\|WP_009200003.1\|616291_617191_+\|YggS-family-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|143483
NZ_CP040503.1\|WP_009200013.1\|623879_627242_+\|HNH-endonuclease	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|375896
NZ_CP040503.1\|WP_009200002.1\|613027_615997_+\|DUF3516-domain-containing-protein	unknown	unknown	gnl\|CDD\|378795
NZ_CP040503.1\|WP_009200007.1\|619411_620476_-\|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl\|CDD\|179579
NZ_CP040503.1\|WP_009200027.1\|638220_638784_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372273
NZ_CP040503.1\|WP_040323650.1\|629844_630117_-\|AT-hook-motif-protein	unknown	unknown	gnl\|CDD\|227214
NZ_CP040503.1\|WP_050758856.1\|617278_618190_-\|lipoate--protein-ligase-family-protein	unknown	unknown	gnl\|CDD\|223173
NZ_CP040503.1\|WP_009200006.1\|618143_619277_-\|branched-chain-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|237363
NZ_CP040503.1\|WP_009200021.1\|632009_633506_+\|mannitol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223324
NZ_CP040503.1\|WP_050758857.1\|627243_628158_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP040503.1\|WP_138587076.1\|620704_621655_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_050758858.1\|628157_628478_+\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
NZ_CP040503.1\|WP_138587228.1\|636474_637059_-\|DUF218-domain-containing-protein	unknown	unknown	gnl\|CDD\|225500
NZ_CP040503.1\|WP_009200030.1\|640245_640764_-\|acetolactate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|183365
NZ_CP040503.1\|WP_009200017.1\|630157_631153_-\|SPFH-domain-containing-protein	unknown	unknown	gnl\|CDD\|259800
NZ_CP040503.1\|WP_009200022.1\|633732_634605_+\|patatin-family-protein	unknown	unknown	gnl\|CDD\|132847
NZ_CP040503.1\|WP_009200026.1\|638006_638216_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009200029.1\|639082_640114_-\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235491
NZ_CP040503.1\|WP_009200023.1\|634700_636305_-\|low-temperature-requirement-protein-A	unknown	unknown	gnl\|CDD\|377704
NZ_CP040503.1\|WP_138587077.1\|622895_623264_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040503.1\|WP_009200003.1\|616291_617191_+\|YggS-family-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|143483	cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.	5.43807e-77
NZ_CP040503.1\|WP_009200013.1\|623879_627242_+\|HNH-endonuclease	gnl\|CDD\|375896	pfam18470, Cas9_a, Cas9 alpha-helical lobe domain. This is an alpha-helical lobe domain found in Cas9 proteins. Cas9 enzymes adopt a bilobed architecture composed of a nuclease lobe containing juxtaposed RuvC and HNH nuclease domains and a variable alpha-helical lobe likely to be involved in nucleic acid binding. Amino acid residues located in both the nuclease and alpha-helical lobe clefts are highly conserved within type II-A Cas9 proteins.	4.05866e-105
NZ_CP040503.1\|WP_009200017.1\|630157_631153_-\|SPFH-domain-containing-protein	gnl\|CDD\|259800	cd03402, SPFH_like_u2, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model summarizes an uncharacterized family of proteins similar to stomatin, prohibitin, flotillin, HflK/C (SPFH) and podocin. The conserved domain common to the SPFH superfamily has also been referred to as the Band 7 domain. Many superfamily members are associated with lipid rafts. Individual proteins of the SPFH superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease, and in cancer invasion and metastasis. Mutations in the podocin gene give rise to autosomal recessive steroid resistant nephritic syndrome.	1.11787e-115
NZ_CP040503.1\|WP_009200007.1\|619411_620476_-\|3-isopropylmalate-dehydrogenase	gnl\|CDD\|179579	PRK03437, PRK03437, 3-isopropylmalate dehydrogenase; Provisional.	0
NZ_CP040503.1\|WP_009200027.1\|638220_638784_-\|hypothetical-protein	gnl\|CDD\|372273	pfam12724, Flavodoxin_5, Flavodoxin domain. This is a family of flavodoxins. Flavodoxins are electron transfer proteins that carry a molecule of non-covalently bound FMN.	1.53803e-09
NZ_CP040503.1\|WP_040323650.1\|629844_630117_-\|AT-hook-motif-protein	gnl\|CDD\|227214	COG4877, COG4877, Uncharacterized protein conserved in bacteria [Function unknown].	2.51649e-12
NZ_CP040503.1\|WP_009200002.1\|613027_615997_+\|DUF3516-domain-containing-protein	gnl\|CDD\|378795	pfam12029, DUF3516, Domain of unknown function (DUF3516). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is typically between 460 to 473 amino acids in length. This domain is found associated with pfam00270, pfam00271.	0
NZ_CP040503.1\|WP_050758856.1\|617278_618190_-\|lipoate--protein-ligase-family-protein	gnl\|CDD\|223173	COG0095, LplA, Lipoate-protein ligase A [Coenzyme metabolism].	5.80224e-44
NZ_CP040503.1\|WP_009200006.1\|618143_619277_-\|branched-chain-amino-acid-aminotransferase	gnl\|CDD\|237363	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional.	0
NZ_CP040503.1\|WP_009200021.1\|632009_633506_+\|mannitol-dehydrogenase-family-protein	gnl\|CDD\|223324	COG0246, MtlD, Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism].	2.83265e-176
NZ_CP040503.1\|WP_050758857.1\|627243_628158_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	5.91405e-75
NZ_CP040503.1\|WP_050758858.1\|628157_628478_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.45675e-17
NZ_CP040503.1\|WP_009200030.1\|640245_640764_-\|acetolactate-synthase-small-subunit	gnl\|CDD\|183365	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed.	3.50975e-85
NZ_CP040503.1\|WP_009200022.1\|633732_634605_+\|patatin-family-protein	gnl\|CDD\|132847	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.	1.28894e-81
NZ_CP040503.1\|WP_009200029.1\|639082_640114_-\|ketol-acid-reductoisomerase	gnl\|CDD\|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0
NZ_CP040503.1\|WP_009200023.1\|634700_636305_-\|low-temperature-requirement-protein-A	gnl\|CDD\|377704	pfam06772, LtrA, Bacterial low temperature requirement A protein (LtrA). This family consists of several bacteria specific low temperature requirement A (LtrA) protein sequences which have been found to be essential for growth at low temperatures in Listeria monocytogenes.	4.43287e-61
NZ_CP040503.1\|WP_138587228.1\|636474_637059_-\|DUF218-domain-containing-protein	gnl\|CDD\|225500	COG2949, SanA, Uncharacterized membrane protein [Function unknown].	2.52481e-46

>NZ_CP040503.1|WP_050758858.1|628157_628478_+|CRISPR-associated-endonuclease-Cas2
MADDPMWCMVLFDLPTKTAAQRREYAAFRNLLLDNGFVRTQYSVYARYSPAGILASRIVSSIKGAVPPQGEVRILHVTDRQWAATLRFFNATEEAVENEPEQLAFF
>NZ_CP040503.1|WP_050758857.1|627243_628158_+|type-II-CRISPR-associated-endonuclease-Cas1
MSNRWRIIDCSSLKGKIQTARGAVKILKDDHPPSSVPTADVAVVLIGMSATFSVAALHRLLSEDIAVLFCDWKGVPEGAAFSWSSHGRVGARHRAQACLSIPRQKNAWGRIIRAKVEGQAAVLREYNRVDTTELRSLAREVRSGDPGNIEARAARLYWQALWGEESFRRHPGLGSGESCRNSHLDYAYTVLRGHGIRAVLGAGLSPTIGLFHHGRSNNFALVDDIIEPFRPAIDSSVSRLAPNADMKDPEVRKHLVAAADQRFLPDGRRISAALDELAQHFGQYIEGELNTLPVPSWTGPIRSW
>NZ_CP040503.1|WP_009200013.1|623879_627242_+|HNH-endonuclease
MNAMKQYNAGIDVGINSVGFAAIEVDSKGLPLNILNNMVVLHDSGVDPGTAKTGATRLANSGTARRTRKLIARRRKRLQKLDRYIEVQGWPLVDFSSLPDPYTPWKIRAKLTQDRLEGEEQGRGLSIALRHMARHRGWRNPYEGVESLHSPKEASKQFKDLKDRVTKVSGVIFDEDATPAEVVCDIGLSPKQRLRSAPSAKYKEGATLADEPVGGKSKEGLLGGKLMQSDNANELRKIGIVQGLSNEKVNEIIDQVFASESPKGQAGKRAKKDELPGQEQYVRALRAHLAFQRFRIVAAVANLRILEAEPKHERLLSQSEKDKVIEFLMSADGDDGVTWSDVAEELGIERECLSGTAKRGADGERPSSFPPTNSTNISIVRSKVKPLIEWWRKASDDEQATLVTALSNADELTDDQPSAETVRQFLSSPDEQSQEKIDKISLPKGRAAYSVNSLERLTRRMLKDSVDLFEARKREFGVDNNWTPTPDSIGEPVGNPAVDRVLKIVNRWLLAVTRKWGPPKVVNIEHVRVGFTSAAQTRKYEEENKTNRERNLAILEELRDKFGTSGKIRREDITRFAALRRQNCQCAYCGEAITFFDCEMDHIVPRKGPGSTNTRNNLVAICERCNKSKSNMPFSLWAQNCDIPGVSVEAVIDRVRTWIKDPELNPKQYNNFKKDVIERLRKTVDDDAIDNRSIESVAWMATELADRIGSHFRTAGANTKVRVYRGWLTSEARKASGFEGKINLIGGRGKTRLDRRHHAMDAATIALMRQSVAQTLVERASIRESDRLRRVVSSSWKDYRGADRDKQFSYGSWLNSMNALAELFNRAIDADGIPVTQNLRLRLGNGEAHDATIRSLEKKRVGASWTIGEIDRASTPQLWLALTRQEDFDQNDGLPANASRELRVKNHWFHAEENVTLFPTKSAAIAVRGGYAEIGNTIHHARLYKLPGKKLTYGMIRVFAIDLLCAWHTDLFSSPLLPESISLRTAETKVRRAVEDGAAMYIGWLVDGDEIVLDPETKAFKSNKIGEYLCEFPGTKRWKVDGFPDKEKLRLRPLQLAGEGLPEDVSAGTEEILGPKGNGWRVAINALFKSSQLVVVRRTALGMVRKLSRRHLPLTTRLRG
>NZ_CP040503.1|WP_138587077.1|622895_623264_+|hypothetical-protein
MEEFESSGKRVSSDAYEDSGAYGESDESAGDEAEGRRVASTSMSSTQKFQPAGAGPQAGSGLQPAGGVHPSGAGGQFGGGLNLLDMSNTPVVRETTMPLSHALPHPPPPTSTVRNASSLFCS
>NZ_CP040503.1|WP_138587076.1|620704_621655_-|hypothetical-protein
MSSSGVDYSAQGQGPSQPTYGASSDFGTGMPFGLDGTPRKSFLTSKAGLAVISVVAVIAIAAAIIFLPKLMKDDKEESTGKSSPSTSTTTSPRSKSPDPHKPTDDESTPASTVAPSKPTRPALTGTFKEYQGDGPQTIDIQKPQGSRPVLLYFEVNPTSNYGLFLFEAEDAGGSETERFGGMVKDEKATGTFPLDAFANGKQTSKIKVTAPGPWMIRVYPISSIPTISQGATIAGNSYETFLYRGGEASATFKYVGNTSKGRITGTLWPTDGSSKANSFIKEQKAAVEKDVTIPAKTSESLILIDTTGGNWSLEIP
>NZ_CP040503.1|WP_009200007.1|619411_620476_-|3-isopropylmalate-dehydrogenase
MTSIDLAVIPGDGIGPEVVAEGLKVLDAVCEALGGPEIATHTYDLGARRYLATGETLTDADLEDIKGRDAILLGAIGDPRVPSGVLERGLLLKLRFALDHYVNLRPNRHYPGVPTPLADPGGIDFLVVREGTEGLYCGNGGVVRQGTPHEIATEVSVNTAYGVERVVRYAFAKAQARPRKKLTYVHKHNVLVNAGGLWRRVVEEVGAEYPDVAVDYMHVDAATIFLVTDPARFDVIATDNLFGDILTDEAGAITGGIGLAASGNINPEKAFPSMFEPIHGSAPDIAGKQIADPTATIASVALMFDHLGLAEHARAIEDAIESDMAARASAAEAGAPLKRSTSDVGNAVATLVRG
>NZ_CP040503.1|WP_009200006.1|618143_619277_-|branched-chain-amino-acid-aminotransferase
MSYTDLELASMEAVPAADDLVGTWDARPNPHPASDAEREGVLAAPGFGKRFSDHMAHAVWTPDKGWHDFRIEAYGPLSLDPAGAVLHYGQETFEGLKAYRHEDGSIWTFRPTYNAARLNHSNRRLAIPELEHEAFIGSLVNLVRQDAAWVPNTPGSSLYLRPFIFASEAFLGVRAAERYEYLAVASPSGAYFTNGFQPIDVWVEREFHRAGPGGMGDAKTGGNYASSLLPKTIAHEGGYDEVMFLDAATDTNIDELGGMNVFVVMSDGSIRTPKLTGNILAGCTRSSILQLLRDDGADVREETLALADVLAGIESGAVAEMFACGTAAVITSIGSLSGKDFRVEIPGNKVTRTIYDRITGIQLGKVEDRHGWLYRLA
>NZ_CP040503.1|WP_050758856.1|617278_618190_-|lipoate--protein-ligase-family-protein
MERSKTATVGSIGSLSRAAEPGVARISRPGADRFSKAGVARLPEADGAAGLPSRFDLLESRPLSVALNLALDHAVAESVAGGVRPAAVRLWNWSETAAVIGSSQSLSNEIDVEAAKKRGIALARRASGGGTMYMDPARAVAYSVIVPSAALSGLSLRESYALCDSWVLRALKEMGVPAFYMPINDIATLDGKIGGAAQRRLAGGATIHHAVMSWEIETEQLLAVTRLFRPDTGARGTKSAQKKVVGIRSYVDAAREDVIDALRQSLARGRTVRRAKYRPDELIAAESLAKAKFADPAWLARIP
>NZ_CP040503.1|WP_009200003.1|616291_617191_+|YggS-family-pyridoxal-phosphate-dependent-enzyme
MNENGGKGTGGVETSRVDANGGRAGGVETNGVNWSGQETSFEGISRPDVSEIAGRWESLRDKVAAAASRAGREENAVSILLAAKFQEPERVAAALRAGGSLIGHNYIQQLEEGERALTELGAPFHRVHVIGHVQANKAGKAIRAADCIETVDSPKLAARLDRLQGERISAGELRKDGSPLGPFDVMIQVNSAGSESQHGVDPSGVVDLAGAVADLPNLRLVGLMLIGANTDDVAAVAASHARVRELRDAVQAAGVASCTELSMGMTGDMEIAIAEGSTEVRIGTAVFGPRPIMKQNRSR
>NZ_CP040503.1|WP_009200002.1|613027_615997_+|DUF3516-domain-containing-protein
MARDTVAALALPTPAPQEPRETDVAVPMPSLWQSCGVTNEKPDAPALNLALDRLEDAFGFTPDGDAVYEEFSNWAESTGRPLYPHQEEALLAAVSGDNLIVSTPTGSGKSMVALAAIFTALAHGRSAYYTAPLKALVSEKFFELIAAFGAHNVGMVTGDSSINAGAPIVCATAEIVANIALRDGDAADIGVLIADEFHFYGDPQRGWAWQVPLLELASTQHVLLSATLGDTSFLAEDLSKRTGRNTSVVDRAERPVPLAFSYSREPLGEVVLELVHTHRAPVYVVHFSQKEAVSQAQALLPINLTTKAERELIAKEIGDFRFGPGFGKTLSKLLRSGIGVHHAGLLPRYRRLVERLTQAGRLKVVCGTDTLGVGINVPIRTVLLTSLSKFDGTRSRHLSAREFHQIAGRAGRAGFDTAGDVVVQAPEYEIENAKALEKAAGDPKKLKKLVRKKAPEGVVLWGEKTLAHLQNAAPEKLASQMRVNHAMILNLLQRPGDSVAAAVRLLTDNHEPKTESNPLLRRAVEIYETLRSAGVLVHHDVQWQAAHPGESAVDFAREVPSDFALNSPLAPFALAALDLLERESPDYPLDVVSVVEAVQENPMQVLYAQERAARGEAIGRMKAAGMGYEERMAEADSITWPRPLAELLEGALAVYRQTNPWVDGYDLTPKSIVREMVEHAETFSEFVSRYDLARSEGVLLRYLSDVYKALRQTVPLEARTDEVDEITQWLGTLVRSVDSSLLDEWEALADGRVTPEEAARMSGEAEGGLDEVAFGADENGAAAFTRNRHAFKAAVRNAAFRRVEAVQFEDLESLDRLDGEPAWTESSRFGDAGSQVGDEGGEAEAVGGAAGATRSEAQDARSEAGDEGSRATPANREAGPVWDGDAWMDATDPYFDVYESVGIDSHARGNEFFRVQEQVDAADLAEAGVPREVAEALVEGKRPGRLWIVTQVFDDGESDGGWGFRAFVDLDECDELGAAKLRVVHVGEL
>NZ_CP040503.1|WP_040323650.1|629844_630117_-|AT-hook-motif-protein
MPPEKGKRAAAGKGAETKRKQLLLRLDPAVHEAIAKWAADDLRSVNAQIEIILRRALVEAGRDPRPKPMRGRGRPRKEPDDEAGQADGKT
>NZ_CP040503.1|WP_009200017.1|630157_631153_-|SPFH-domain-containing-protein
MKHRRSAKPRESAKLPESAKLQAEAAEFRARVHIDEKIVWSAGSGPAFLAAVGLLAALAGFIYLIVVGAIDSADGIVVSGAIKIAIGTVGVIVVCLLGTCFYIVSPGETSVRQFFGKYIGTVRRTGLVLIPPLTYGKRVSVKVHNFETYELKVNDLDGNPVNIAAIVVWQVADTARAVFAVEQYEAFIKAQAESALRHVATTHPYDGPGPGETSLRGGTDLVSSELAEEVAARVALAGLEIIEVRISSLAYAPEIAQAMLQRQQAGAVIAAREQIVEGAVSMVDQALKRLEDSDIVVLDDERRAQMVSNLLVVLCSDQRTQPVVNAGSLYT
>NZ_CP040503.1|WP_009200021.1|632009_633506_+|mannitol-dehydrogenase-family-protein
MTSTFGTSTQSSVAASLASAFLAPTYDRSAVTSGIVHFGLGNFHRAHQAMYLDRLMSEGEALDWGICGVGVMPSDKRMRDVMQNQDGLYTLVLKHPDGTLEPKVIGSIHEYLYAPDDPSKVLDKMTDAGTRIVSLTVTEGGYNIDDATGEFNTENPAAKHDAEHPDKPTTAFGFIVEALRRRRDAGIPPFTVMSCDNLPGNGSIAKAAVLAQAKLTDPELEAWIRANVAFPNGMVDRITPVTTPEDVEMVRERYGIEDAWPVTAEPFAQWVLEDKFTLGRPPFEDAGVQLVDDVVPYELMKLRLLNASHQSLAHWGRLLGFEFAHDAAADPDVAAFTRAYLEKEALETLLPVPGIDLPQYVDTLFERFTNASIADTLARLAQDASDRMPKFVLPTVRDNLKENRSIKLGAAMCAAWALGMEGKAEDGSEIVVDDQQGDRLVALAARERDGEDTAVISDEAVFGELGSDPRFVEAFTEALRAIRADGARAVMKHLVAED
>NZ_CP040503.1|WP_009200022.1|633732_634605_+|patatin-family-protein
MATGTALIFEGGGMRGTYTAALVAAMIESGVEVPWVGGISAGATHTANFLARDAWRARACFVELAKDPKIGGPISFIRGKGYFNSDYIYHQTTAPGELLPYNWEAYSASSTPFKIGSFDCATGKTVYWGRDDVKDNSDFTTRCQASSSIPIAMPMVQLDGTAYLDGAIGETGGFAVDAARADGYERFLVVMTRPRGYRKGPVRAPAAIYQKIFKKYPAVVEAILKRPERYNATLDELEQLQAEGKAYLYYPETMPVSNGERNAVRIQAAYEEGMQQARRDLPAIKEFLAG
>NZ_CP040503.1|WP_009200023.1|634700_636305_-|low-temperature-requirement-protein-A
MSESIVGTGRRLDVHPGRKQEVTTLELLFDLVYILALAQLSEHLLKNLDWRGVLETLVLLLAVFCVWSLTVYDSTTVLIRSRAVYPIVVAAMLVSLVMNTAIGGAFGGSPWMFVAPMLVVQFGRTFVARRMDVYEALRRQRTAVAIWLGFSSLLWVAGCFASREQRLWLWLAAALIDLAGRWTQHPLPRFDRSELSRVPFDLGHQVRRCRLFFIVCLASGFLAVGNAMKRHLDAPLSIAVGLLSLTAIVCLWYIYFWRTAVIDGLISGESGHSTNGIGLGLLVAEGQQMLAAGIVAFTAGMEMAVGQPRERISASVGLLLGWGPALCLIALWFVFVKRKVRPEGLNFACLTMLGVGVLLALLRPAGAIAVIEVAIVAVCACLVYGNGVGKMRPFEQADSKDSQDPGDSLRLGDWTDPKAVRLDGREQKPNSGEGNLGGRDGELEGRAPKLAHGGSKLADRASKLADEGRKLADRDDRTDSRGLKKGDRMLDDRMLDGHGLRFDGSTSDKRIVRPTTRVQGREPGDPERGRRSTG
>NZ_CP040503.1|WP_138587228.1|636474_637059_-|DUF218-domain-containing-protein
MTTSTDDSVVTVNSVPSEAKADCILILGASVRANRKPSPMLLKRLERGLELYRKKAAPKVLVSGDNATVAYNEVKVMREWLQAKGVPPQDIFEDHAGFSTYESMYRARDVFKVKRMIVVTQRYHLARAIYTGDALGLKVWGVAANGNNYSGQIKRDMREWVARVKDLGKTVYKPEPRFLGPALPISGDGRATMG
>NZ_CP040503.1|WP_009200026.1|638006_638216_-|hypothetical-protein
MRDENLGLKLNGTTKFGRVRPGGFARLEKKLGADGADLESLAEETVNAVLGNLEAMRDRHSDVVRTRLD
>NZ_CP040503.1|WP_009200027.1|638220_638784_-|hypothetical-protein
MSIAVVYNTVTGFSRTYAEWIAQDLEADLLSWDEAKGMNLAAYRLVVYGAGVRMSAVRGFKDFRRKIKRDGLYGTGRVIVFATGGTPVHPDRDWRSPAATLTKEELARGTFPFFYFEGGIAYDGLNWPEKTLLKIFSKRVQRHRHRGEWAEAVANGIVEGYDHTDRKAVTPLVEEARRILASEQACG
>NZ_CP040503.1|WP_009200029.1|639082_640114_-|ketol-acid-reductoisomerase
MAEIFHDADADLSLIQSKKVAIIGYGSQGHAHALNLRDSGVEVVVGLREGSKSIAKAEEQGLEVASVADAVAQADVVMVLAPDQSQRAIWANDIEPNLKEDAAVFFAHGFNVHYGYIKPGPTHDVCMVAPKGPGHTVRRLFEEGRGVPSLVCVEQDASGQAFELALSYAAAIGAARAGVIKTTFREETETDLFGEQAVLCGGVSQLIQYGFETLVEAGYQPEMAYFEVCHEMKLIVDLINEGGLTKQRWSCSDTAEYGDYVSGPRVIRPDVKDHMKEVLADIQNGSFAKRFIDDQDAGAPEFLELRAKGMAHPIEKTGQEIRKLFAWNNSNLDKDYTDGEAAR
>NZ_CP040503.1|WP_009200030.1|640245_640764_-|acetolactate-synthase-small-subunit
MSTRHTLSVLVENKPGVLTRVAALFARRAFNIHSLAVGETEDPRISRMTVVVDAAELPIEQVTKQLNKLVNVLKIVEPDPAAAVERQLLLVKVSANDSSRANVLQIVDLFRAHVVDVVPDAVTVEATGSDAKVEAFLTALEPYGIREIVQSGAVAITRGARSLSERVAAELN

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Crispr_ID: NZ_CP040503_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040503_8

829069-829152

Orphan

Consensus_repeat	Method
CATTGTCACTGCAGGCACGGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040503_8

>merge|NZ_CP040503|8|829069-829152|CRISPRCasFinder
CATTGTCACTGCAGGCACGGGGGTACGCGCCGCCCGCCACTGGTCGAGCTGGAATCCGGTTAATTGTCACTGCAGGCACGGGGG

>NZ_CP040503|8|8|829069-829152|CRISPRCasFinder
CATTGTCACTGCAGGCACGGGGG	TACGCGCCGCCCGCCACTGGTCGAGCTGGAATCCGGTT
AATTGTCACTGCAGGCACGGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040503.1\|WP_083786202.1\|829227_831660_+\|glycoside-hydrolase-family-32-protein	unknown	unknown	gnl\|CDD\|350134
NZ_CP040503.1\|WP_138587091.1\|834913_835456_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009200072.1\|825524_825986_+\|exonuclease-SbcCD-subunit-D	unknown	unknown	gnl\|CDD\|378837
NZ_CP040503.1\|WP_009200073.1\|824777_825497_+\|exonuclease-subunit-SbcD	unknown	unknown	gnl\|CDD\|273178
NZ_CP040503.1\|WP_009200071.1\|826041_829062_+\|SMC-family-ATPase	unknown	unknown	gnl\|CDD\|223496
NZ_CP040503.1\|WP_050758873.1\|839233_841657_-\|bifunctional-metallophosphatase/5'-nucleotidase	unknown	unknown	gnl\|CDD\|236505
NZ_CP040503.1\|WP_009200074.1\|824161_824653_+\|phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|225145
NZ_CP040503.1\|WP_009200062.1\|834051_834258_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP040503.1\|WP_040323670.1\|831842_832316_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009200076.1\|822251_823286_+\|ribosome-small-subunit-dependent-GTPase-A	unknown	unknown	gnl\|CDD\|206747
NZ_CP040503.1\|WP_009200057.1\|835475_836168_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237865
NZ_CP040503.1\|WP_138587090.1\|833155_833425_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009200056.1\|836282_839120_-\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NZ_CP040503.1\|WP_083786203.1\|820686_822255_+\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|235037
NZ_CP040503.1\|WP_009200082.1\|818628_819078_-\|mycothiol-system-anti-sigma-R-factor	unknown	unknown	gnl\|CDD\|274904
NZ_CP040503.1\|WP_009200081.1\|819074_819725_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|131992
NZ_CP040503.1\|WP_009200079.1\|820113_820602_+\|DoxX-family-membrane-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_138587236.1\|823282_824158_+\|histidinol-phosphatase	unknown	unknown	gnl\|CDD\|273949
NZ_CP040503.1\|WP_009200067.1\|832447_832636_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_138587092.1\|841875_843384_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040503.1\|WP_083786202.1\|829227_831660_+\|glycoside-hydrolase-family-32-protein	gnl\|CDD\|350134	cd18622, GH32_Inu-like, glycoside hydrolase family 32 protein such as Aspergillus ficuum endo-inulinase (Inu2). This subfamily of glycosyl hydrolase family GH32 includes endo-inulinase (inu2, EC 3.2.1.7), exo-inulinase (Inu1, EC 3.2.1.80), invertase (EC 3.2.1.26), and levan fructotransferase (LftA, EC 4.2.2.16), among others. These enzymes cleave sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic nucleophile and a glutamate acts as the general acid/base; a conserved aspartate residue in the Arg-Asp-Pro (RDP) motif stabilizes the transition state. These enzymes are predicted to display a 5-fold beta-propeller fold as found for GH43 and CH68. The breakdown of sucrose is widely used as a carbon or energy source by bacteria, fungi, and plants. Invertase is used commercially in the confectionery industry, since fructose has a sweeter taste than sucrose and a lower tendency to crystallize. A common structural feature of all these enzymes is a 5-bladed beta-propeller domain, similar to GH43, that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	2.03885e-122
NZ_CP040503.1\|WP_009200072.1\|825524_825986_+\|exonuclease-SbcCD-subunit-D	gnl\|CDD\|378837	pfam12320, SbcD_C, Type 5 capsule protein repressor C-terminal domain. This domain is found in bacteria and archaea. This domain is about 90 amino acids in length. This domain is found associated with pfam00149. SbcD works in complex with SbdC (SbcDC) which is a transcription regulator. It down-regulates transcription of arl and mgr to inhibit type 5 capsule protein production. It acts as part of the SOS pathway of bacteria.	3.1525e-05
NZ_CP040503.1\|WP_009200073.1\|824777_825497_+\|exonuclease-subunit-SbcD	gnl\|CDD\|273178	TIGR00619, Nuclease_SbcCD_subunit_D, exonuclease SbcD. All proteins in this family for which functions are known are double-stranded DNA exonuclease (as part of a complex with SbcC homologs). This complex functions in the initiation of recombination and recombinational repair and is particularly important in regulating the stability of DNA sections that can form secondary structures. This family is likely homologous to the MRE11 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	9.43059e-33
NZ_CP040503.1\|WP_009200071.1\|826041_829062_+\|SMC-family-ATPase	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	1.18954e-63
NZ_CP040503.1\|WP_009200074.1\|824161_824653_+\|phosphoribosyltransferase	gnl\|CDD\|225145	COG2236, COG2236, Predicted phosphoribosyltransferases [General function prediction only].	2.8715e-44
NZ_CP040503.1\|WP_009200062.1\|834051_834258_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	2.82754e-10
NZ_CP040503.1\|WP_009200076.1\|822251_823286_+\|ribosome-small-subunit-dependent-GTPase-A	gnl\|CDD\|206747	cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases. YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain.	8.91795e-77
NZ_CP040503.1\|WP_050758873.1\|839233_841657_-\|bifunctional-metallophosphatase/5'-nucleotidase	gnl\|CDD\|236505	PRK09419, PRK09419, multifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase/5'-nucleotidase.	1.91549e-129
NZ_CP040503.1\|WP_009200056.1\|836282_839120_-\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NZ_CP040503.1\|WP_083786203.1\|820686_822255_+\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	2.85426e-136
NZ_CP040503.1\|WP_009200082.1\|818628_819078_-\|mycothiol-system-anti-sigma-R-factor	gnl\|CDD\|274904	TIGR03988, antisig_RsrA, mycothiol system anti-sigma-R factor. Members of this family are the anti-sigma-R factor RsrA, which contains a CXXC motif as a thiol-disulphide redox switch. It interacts with sigma-R. It regulates and is regulated by the mycothiol system, which occurs in many actinomycetes. [Transcription, Transcription factors].	4.30576e-21
NZ_CP040503.1\|WP_009200081.1\|819074_819725_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|131992	TIGR02947, putative_RNA_polymerase_sigma_factor, RNA polymerase sigma-70 factor, TIGR02947 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and (with the exception of a paralog in Thermobifida fusca YX) one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria and each gene examined is followed by an anti-sigma factor in an apparent operon.	6.55034e-94
NZ_CP040503.1\|WP_138587236.1\|823282_824158_+\|histidinol-phosphatase	gnl\|CDD\|273949	TIGR02067, his_9_HisN, histidinol-phosphatase, inositol monophosphatase family. This subfamily belongs to the inositol monophosphatase family (pfam00459). The members of this family consist of no more than one per species and are found only in species in which histidine is synthesized de novo but no histidinol phosphatase can be found in either of the two described families (TIGR01261, TIGR01856). In at least one species, the member of this family is found near known histidine biosynthesis genes. The role as histidinol-phosphatase wsa first proven in Corynebacterium glutamicum. [Amino acid biosynthesis, Histidine family].	6.82172e-79
NZ_CP040503.1\|WP_009200057.1\|835475_836168_+\|hypothetical-protein	gnl\|CDD\|237865	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional.	0.0099391

>NZ_CP040503.1|WP_009200071.1|826041_829062_+|SMC-family-ATPase
MRLRRLTVSGIGPFADTFSIDFDALTAGGLFLLEGPTGSGKSTIIDAVVWALYGGVAGGRDSTDARMRSTHASPSRESFVDLVFSVEAGTFRVRRTPQWTKAGNKNPTNASAKLWRLSESAVEAQQFDAGEILEAKPAGTGAEIARLVGLSREQFLQTIVLPQGKFADFLTLDSTKRTALLEQVFDTSAYRRVAELLKERAAAAQSKVDSARGEWASSVEGLATALKLEGEAKAELAEAADAAGDPADAVRTAALAAAAVLRAEEESESAEEESALAAKRARERAVAAQEAADLASRLQKRSRLLACRDRLRAEEPEIDKLDESLAAHALAAGVASFLAAFDRAKAELGQAERRFALLDASDRSPHDVDAATLESQTALLETMTSLTGRLTELAAVEKELAASRRERTAAREVLRRAQEKVAAARAQASALPQAILRVEERLTAEEAEASRVESMELEAASLAKAAARFADLDRARSASKEANAAAAFEEARLLRDEQTLAWTASMSAIIAGGLSEGEACPVCGSTEHPAPAPPSNVKATREDVEDAEKGAAAARGLLAETEKRAVRAQAEVASAEADLKGLTRESVASALERTRSELASARRAQRKAAASQVELRDLRERSEAAGSSLSAAQSEQAAAEARIAGLDAAVERAQARIVPELAGYETISERLKAHVERANAQRRLVEAVRELLGARGQLDAREGELSAALSEAGFADATAARKAFMPREAAEAARTRVAEHRQASHDVARDLAAPEIAELTGDEAPDVEGTARLAEEAAETSRAAQRRAAVANERSLGARAQLGVVSEREEAWARLQSSAGPVLRLANLANAGSDSITKIPLATFVVRHRFEQILDRANERLADISLGRYQLARSDEKERGSREIITGLSVTVIDRDGEADGAAKRSPRSLSGGETFYVSLALALALADVVRAENGGIALETLLIDEGFGSLDEDTLGLVMSTLTGLARDGRAVGLVSHVAEMKKMIAERVTVRPLGDGSSRVEIRC
>NZ_CP040503.1|WP_009200072.1|825524_825986_+|exonuclease-SbcCD-subunit-D
MRYSGSPVAFSFSETAPKSSILLHIDGKRVETEIVPAPVWREVRTLAGSFEDLLARAPHEPADAFFRIVVTDPSRPANMAARIYGAFDNVLELRHTPEGGLRSHERADSIAAMAPLDILSSFMAAAGNRDLTGEERAILAEAWEAARLDGKRR
>NZ_CP040503.1|WP_009200073.1|824777_825497_+|exonuclease-subunit-SbcD
MLVLHTSDWHLGRSLHRADLSPAFEMWSSHVVDLVKERRIDAVLILGDVYDRAVPPTSAVELFDRTLAELAELTTVVLTSGNHDSPQRLGFGSSLMRPNVHIRTDARRCGRPVEIVGRDGNRVFVYPIPYLDPDVERRRLAPSDPTSGDDGAAEPLGRSHEAVLAAALKLVSADVRSRPQDAGAFIVMAHAFISGGKPADSERDISVGGVDSAPSGLFRLGEDGPGPLSYVALGHLHSP
>NZ_CP040503.1|WP_009200074.1|824161_824653_+|phosphoribosyltransferase
MTDEREILTWDEFGEACRDLAGSVWDSGFRPDIIVCVARGGLLPAGSIGYALDIKSLLVLNVEFYTGIGTTLLDPRLVDPVPDNHGMAGKRVLIVDDVADSGRTLKFVHEICEQYASEIRTAVLYEKPRTVLKCEYVWKRTDRWIAFPWSALPPVNSQKNSEA
>NZ_CP040503.1|WP_138587236.1|823282_824158_+|histidinol-phosphatase
MRMSLTRVNDDLAFASSIIDRVDSVTLRHFQTEDFSAQTKEDFSPATGVGREADRIIRAMLGRSRSRDAIYGEEHGGILLRSARRWIIDPIDGTKNFVRGVPVWGTLLALEEEGEIVVGIVSAPSLGRRWWAAKGVGAFTGKSWVGARRLRVSEVSDLAEASMSYSSLKGWADRGQLRAFLRLAQRVWRSRAYGDFWSFMLVAEGAVDLACEPELELFDMAALVPIVTEAGGSFTSLHGEPGPWGGCALATNGALHPEVLEILGSIRDEDAVGEGAPNLSASAARSQSGHN
>NZ_CP040503.1|WP_009200076.1|822251_823286_+|ribosome-small-subunit-dependent-GTPase-A
MRRDIGTDDPRVRVRPGKGSRPRTKIRPDYSSARTAEVVGVDRGRYRLVLADGLAVTAVKARELGRGSVVVGDRVRVTGDVSGKKDTLARVVSVEARASRLLRSTEEGNGRERCIVANAQQLAIVTALADPPPKTGMIDRCLVAAYDAGMEPLLVLTKADLASPDRLLDSYGALGLRVVVVDLGPRRDLEARRLEEGDAEASGLEALRKALAGVETVLVGHSGVGKSTLINALVPDADRATGEVNAVTGKGRHTSTSAVSLALPGGGRIIDTPGVRSFGLAHVSPQDVLRGFTDLAAIAENCPRGCEHGWDSPECALSEQTDLRLIARTASFRRLLAACTEDWS
>NZ_CP040503.1|WP_083786203.1|820686_822255_+|3-phosphoshikimate-1-carboxyvinyltransferase
MTHERSASAQRRAPHPISAQQASAAAQPSESRQPSARHSSSPGPRAVWTAPQPSGPVRANVSLPGSKSLTNRYLLAAALGEEPAVIRRPLISRDTALMAQALAAMGAGVEGDGAAIVVTPGPLRGAHVDVGLAGTVMRFVPPIALFARGDVVFDGDEAARTRPIAPLVRALEQLGGQIAHSTSASGQAALPMTVKGKGTVTGGTVEIDASASSQFVSALLLAAPRMERGLDIRHTGRRIPSAPHIAMTVDVLREAGIAVRAIDRSGRSGGLSPSVEPSPCNGSDARGGLGAEPADPPGQPTRWTVEPGIPRIGDVTVEPDLSNAGPFLAAAMATGGETILDWPDSRQPGAAYRELFEAMGARTRAADGRLALRGPATIAPLDADMHDVGELVPTVAAVAAFANGPSALRNIGQLRGHETDRLAALVAELTKVGATAQIEGDDLLIEPGPPKPATIETYADHRMATFGAILGLRIPGLRVANVETTAKTFPQFVDMWEDLAAGAEDVAPAPLGDIFGHAGLGA
>NZ_CP040503.1|WP_009200079.1|820113_820602_+|DoxX-family-membrane-protein
MSILRAVARPLLAAPFIVSGADALARPKAHRERAQRLAPVASKFGVELDETTSDSAIRSLGAVFAVAGVALAAGKFPRAAGAVLAAAQVPVALANNPVWSGKGKDRKERLTELTGLLGAAGLVGGALLAAADRDGKPSLSWRRQANRRHKEALKAARANRAQ
>NZ_CP040503.1|WP_009200081.1|819074_819725_-|sigma-70-family-RNA-polymerase-sigma-factor
MTTETTIPEAEGPDADRAAEFDVAGETQAERSRRFESEALPFLDQLYGAAMRLTRNPQDAEDLVQETYAKAFAAFHQYRPGTNLKAWLYRILNNTFISNYRKAQRQPKQADVAEVEDWQEYDASTHASSGLQSAEAEAIENLPDSEIRDALAQLPEDRRLAVYLADVEGFSYQEISEIMDTPIGTVMSRLHRGRRQLRDLLTDYARDLGYGKKETK
>NZ_CP040503.1|WP_009200082.1|818628_819078_-|mycothiol-system-anti-sigma-R-factor
MRSDEEIAKAVEEILRAKSDRSLQDAGAGGAEGLAGAGDGPDGFRDRADGSGNGRDGVGGPCGAAGSFLEGSCEEVADHLFELLDAQMPLEAAARLRRHCETCPHCSELAEAEIHVREIVKRSCCAESAPVSLRMRVTNQIAVYRSTTA
>NZ_CP040503.1|WP_083786202.1|829227_831660_+|glycoside-hydrolase-family-32-protein
MRKVAFPQANRPSSDPPPGVAAERRTRGDVFAPCPRVRSPGGILPFVQSCPFPNSPASTNVETYITTTWEEQVVKSFKKEPRAALSLAAAFLLPFTSAGCFSSEGASRPASAASSSRAQTGQTDGSSNRSSSTPSAGASASPNPEAASAQTPANSTAVSPPVDANDPWRPLTHYTPKGNWMNDPNGLVYHKGEYHLFYQYNPKGSDWGNMSWGHAVSSDLVHWKEQGVAIPGTDQYGVFSGSAVVDARNTSGFGTADNPPMVAIWTRNDNASGIQSQSLAYSTDNGRTWTLHNGGAPVLDVKSKSFRDPKVFWDEKTKRWTMVLVKADEHKVSFYSSPNLKDWKFESDFGPVGDVSSVWECPDLFPMKVEGESGKTRWVLTVNTSPSAQYFVGDWDGKTFKADSSRTYTGKEGKTLADFEDDAYGSWTTSGSAFGNGPSHATGRDISGYVGSGYVNSYGSGDSDTGTLTSPEFTINANRLNMLIGGGSHPYSSVEGSQHTSVNVVVEGKVVATATGNDSAKMFWQSLDLKKWRGKKARVVIEDKNTSSHWGHITVDQIVLSDTPAFNESVPKVDYGHDYYASVTWEGAPDGKRYAVGWMSNWTYAKEVPTKTWRSAMSTVRELKLRKANGKERLVFSPVSSLNSLRTGGEFKKSDVTIEQGTTPLDAAASGKSLDISLTLDPLKAKESGISVLADATQDARGKTQGTRIGYDAAKQQIFVDRSNSGEVGFSPAFPGRSVADFKPGKDGLVHLRVIVDSSSVEVFADDGKLALTETVYPAAGADKVSLFAAGGEAKARSLSVWHLGSYRQG
>NZ_CP040503.1|WP_040323670.1|831842_832316_-|hypothetical-protein
MRIYIPATGVDIGRDALLPRTVHAVTDELRDLLPGDVEEVLEAVAMNAATDESLRVLAALAASGETVYPLRVVIAAEIEEKKTAHVEGEDILPTALQLVEPVGWEDVVSFHVDDAKAANDVVLAIGGDAAALERVTDDEDLMWFDVEERGRLIEYFG
>NZ_CP040503.1|WP_009200067.1|832447_832636_-|hypothetical-protein
MTAEKRAASGGEPHRRDRKQGTGDGAEENGDGAEESRLRRMKRLFPLRKRRQGNAAGSSGRT
>NZ_CP040503.1|WP_138587090.1|833155_833425_-|hypothetical-protein
MRQVFGHAVGRRIRFGREAAMSLLLCLGGALEAEVARILSKSDPVVGIARRCADRAEVVTAAEAGVGSVAVLREWDLKLSKVSIDVELL
>NZ_CP040503.1|WP_009200062.1|834051_834258_+|helix-turn-helix-domain-containing-protein
MAKFLTIADVAEYLNVSVGQVRTLIKTGELPAIQVGGRGQWRIEDDRLNEYISRGYANTREKIESSRH
>NZ_CP040503.1|WP_138587091.1|834913_835456_+|hypothetical-protein
MSHSPTTYILCGFACAWTAAVSWTKPIPHIAADAPLSNSNFRLAAVAFCASAATLACAWFAISYVGLAHARRGRRSAFVAFARRFGSPSVKRAVGLLAPGAAAKPKRPRRSAGEERGRARSGPSEARMVTVLPGGRPWAMAARNLPGEASRSGIASHTQLWFEANCTTLSSPTFFAPAKS
>NZ_CP040503.1|WP_009200057.1|835475_836168_+|hypothetical-protein
MSTLATKSPRPANTPGRGTPAVSEPPEATKLSISERAPVSAKSTGPAEPTGQKERAGQIVVGRPPSQLLAPSPAPEEGIPRSFPHTTPERPWDRLSVAARKPAKTAWDEEAPRLDAELPPDAPKGTSLIGSIVILVVEVLLGHRPATALRHWLAPEVYGPVARRAGLAIRIKGRAPWTCRPRILKVLANKPLARVIEAAAAVYDGQRVRAACLRMEFLRGRWKVVALEIA
>NZ_CP040503.1|WP_009200056.1|836282_839120_-|preprotein-translocase-subunit-SecA
MGKFINRILRAGEGRTLKKLEAIKKQVNALEPTFEDMTDEELRGQTEQFKERIADGETLDELLPEAFATVREAARRTIGQRPYDVQIMGGAALHLGNIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLASYQSELMGRIHRFLGLTTGCILTGQDSDERRKEYAADITYGTNNEFGFDYLRDNMAWQTSDLVQRGHNFVIVDEVDSILIDEARTPLIISGPAEGDADKWYSEFARLALRMRKDTDYEVDEKKRTVGILEPGIDKVEDLLGIDNLYESLNTPLIGYLNNAIKAKELFVRDKDYIVRDGEVLIVDEHTGRVLPGRRYNEGMHQAIEAKEGVEIKAENQTLATITLQNYFRLYDKLSGMTGTAETEAEEFASTYKLGVVPIPTNMPMIREDKVDYVFPSRKSKLKAIVEDIKERYEVGQPVLVGTTSVEKSEELSKLLCDARVPHQVLNAKQHEREAAVVAEAGRKGSVTVATNMAGRGTDIMLGGNPEHRAVAALKSRGLDPEKTPDEYEAAWPQALKEAEEAVAEEHDEVVELGGLYVLGSERHESRRIDNQLRGRSGRQGDPGESRFYLSLEDDLMRLFATGIAQRALNPSIYPEDEPLEFKIISKSIERAQTSIESRNAEIRKNVLKYDDVMNEQRNVVYAERRRILEGEDLEAMVEGFLDYVVEDIVGVHTQSDAPDEWDLDKAWIELKGFYRPGFTVEELIDEVGGVSKLEREHVLDELKTDIHTNYRDREEEVGEDAMRELERQVILNVLDRKWREHLYEMDYLKEGIGLRAMAQRDPLVEYKSEGYDMFQAMNDGIKEESVRYLFNFELPSEREEREAAIVSAESAAQAAAEAEAAQRELAAEMAAQTAAQSARSRVDAEKVLGIKTPKRSRAVSYSAASEDGTVKTTDESGKSVRRAAPRGSEGSSDGMNRAQRRAAARRRKH
>NZ_CP040503.1|WP_050758873.1|839233_841657_-|bifunctional-metallophosphatase/5'-nucleotidase
MSTKKRLTTSAAAAAACMLLVQAAPANAAQTAQNPAGLHGGIVADGTGRGGGGSGSPSPSASDGAGADPAGPTAPGRPGSSSAGGSPTPSGDSFDLTVMATTDVHGHAYNWDYFRDQPYPQGRVRKLGMARAATIIENARKSKPEGSVLVVDNGDAIQGTPLTYVAAKRPQLLQGRTHPMAEAFNNVGYDAQALGNHEFNYGLDVLRSYGAQLKAPLLGANVVKAGTETPAFTPYTLIDRTIGGKRVKIGVVGLVTPGVRVWDRAVVDGKLEFRDPVVTAQKYVPQMKARGADVVVALVHSGLDAEGVAWNPALLQENVAGSVASKVNDVDVVVGGHSHVDIPSKVFRAPDGDPVLFTQPTYWAQSVSQVTLPLKANENGRGYKVSWPRTDSQIGALAQAKYADQVADSPTFAANKKLKADHEATVAYVNTVVAQSKERLTSATSHYEDTPILDFVGYVMADNVRRGLKGTKYEGLPVVAQTSPFSRTAVFPKGNVTIKDIAGLYVFDNTLGGVLVTGRELKDYLEHSARYFVQVPEGSTFDPSKVNAKYDGATRGIPDYNYDALTGLRYRIDVSKPVGSRIVGLSYPDGRPLGDGDKLILAVNNYRQNGGGGFPHMGGNARVVYDEQQEIRQLLIDYAQNAKTIDPAVFFERNWEVVTSSSAAPAPSASVRPSDVAPSASAAPSRPASSGPADPSDAAPSGSPAPSASGAASSASNGASSDSKASSGSDALPSARGARGGEDSDGRQEARNPRRSADPVADRRRTFNQKLAATGLDARALALAGLLAAAAGWVAIRRRQASLRRRP
>NZ_CP040503.1|WP_138587092.1|841875_843384_-|hypothetical-protein
MSAEYRDLPKLVGKLKLAAIDAYIGSSSNFSLDKSSNCYVLSGKLGSLDMSISMSRPNADGTGGGEFASPERTERSGYKELFDQIRKRVDKIVKPWMDLPNPYSDSFNGKINEYREKVAAVLSETSIEGLDPTTKTTDVSTVKLQSFDKIAPGRMRTLLKGMNDYAPALEGSAFNTFRATFVTSMPSVIGNLALLARVHGETLLAEQLFLKQLRKKVVEAVEKATDAFEEIAEEEDGVSFDMLLNILIWGCMAATIPGGGAAATARLAGGASVPLAVLKDVRSLKGSKTAKKATFEADNFEEMMKEFKRAFEEIGDDFKAAEEAVDENLRYNMKLVLEDRARHGYTDTFFHLTPAPIQDAAGATRMDENAVNQMTVGDGATGGYMSQIAAELEKAAKALTGISMVDLVRRKHNIGMGPTGPGGAFAELRQVLYELLQDLRWKVDEGNVNLRAAMRDFQESDASSQKALDAVASNVAQGSGMDPWDHKKQKEENLRPHSNGNV

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Crispr_ID: NZ_CP040503_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040503_9

929604-929803

Orphan

Consensus_repeat	Method
CCCTTCGCGCGGGGACAGCAC	CRT

3 spacers

The CRISPR arrays of NZ_CP040503_9

>merge|NZ_CP040503|9|929604-929803|CRT
CCCTTCCCGCGGGGACAGCACGCCAAAGGTATGACGCGCGGTGGACGGTTGGCCGGCCCCATTCGCGCGGGGACAGCACAGCGCGGCATTGCCGGCGCGCATCAAATCTGCGCCTTCGCCCTCCGCGCAGGGACAGCACTGTCTTCGTGAACGGCAACATGACACGCACGCAGCCTTCACCCTTCGCGCGGGGACAGCAC

>NZ_CP040503|9|2|929604-929803|CRT
CCCTTCCCGCGGGGACAGCAC	GCCAAAGGTATGACGCGCGGTGGACGGTTGGCCGGCC
CCATTCGCGCGGGGACAGCAC	AGCGCGGCATTGCCGGCGCGCATCAAATCTGCGCCTTCG
CCCTCCGCGCAGGGACAGCAC	TGTCTTCGTGAACGGCAACATGACACGCACGCAGCCTTCA
CCCTTCGCGCGGGGACAGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040503.1\|WP_138587096.1\|939871_940456_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_064230674.1\|918414_920070_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378910
NZ_CP040503.1\|WP_009198518.1\|941657_942371_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009198534.1\|927380_928637_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP040503.1\|WP_009198532.1\|928752_929541_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP040503.1\|WP_009198522.1\|939163_939589_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009198519.1\|941211_941661_+\|C5-O-methyltransferase	unknown	unknown	unknown
NZ_CP040503.1\|WP_040322607.1\|933524_934073_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|182015
NZ_CP040503.1\|WP_009198540.1\|921619_923443_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283837
NZ_CP040503.1\|WP_040322606.1\|936043_936385_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009198529.1\|932898_933528_-\|anti-sigma-factor	unknown	unknown	gnl\|CDD\|378389
NZ_CP040503.1\|WP_009198527.1\|934196_935879_-\|redoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239310
NZ_CP040503.1\|WP_040322612.1\|920927_921530_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374742
NZ_CP040503.1\|WP_009198545.1\|917230_918073_+\|SMP-30/gluconolactonase/LRE-family-protein	unknown	unknown	gnl\|CDD\|369882
NZ_CP040503.1\|WP_040323095.1\|936573_938115_-\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NZ_CP040503.1\|WP_009198523.1\|938402_939164_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_040322614.1\|920607_920925_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009198546.1\|916602_917256_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224473
NZ_CP040503.1\|WP_009198536.1\|926370_927201_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NZ_CP040503.1\|WP_138587095.1\|924016_926374_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|223650

Protein	Function_ID	Function_description	E-value
NZ_CP040503.1\|WP_064230674.1\|918414_920070_-\|hypothetical-protein	gnl\|CDD\|378910	pfam12671, Amidase_6, Putative amidase domain.	3.01766e-18
NZ_CP040503.1\|WP_009198534.1\|927380_928637_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.14221e-29
NZ_CP040503.1\|WP_009198532.1\|928752_929541_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	4.81745e-66
NZ_CP040503.1\|WP_040322607.1\|933524_934073_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|182015	PRK09646, PRK09646, ECF RNA polymerase sigma factor SigK.	1.64207e-41
NZ_CP040503.1\|WP_009198540.1\|921619_923443_-\|hypothetical-protein	gnl\|CDD\|283837	pfam06259, Abhydrolase_8, Alpha/beta hydrolase. Members of this family are predicted to have an alpha/beta hydrolase fold. They contain a predicted Ser-His-Asp catalytic triad, in which the serine is likely to act as a nucleophile.	1.13962e-20
NZ_CP040503.1\|WP_009198529.1\|932898_933528_-\|anti-sigma-factor	gnl\|CDD\|378389	pfam10099, RskA, Anti-sigma-K factor rskA. This domain, formerly known as DUF2337, is the anti-sigma-K factor, RskA. In Mycobacterium tuberculosis the protein positively regulates expression of the antigenic proteins MPB70 and MPB83.	1.37975e-13
NZ_CP040503.1\|WP_009198527.1\|934196_935879_-\|redoxin-domain-containing-protein	gnl\|CDD\|239310	cd03012, TlpA_like_DipZ_like, TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.	4.92017e-57
NZ_CP040503.1\|WP_040322612.1\|920927_921530_-\|hypothetical-protein	gnl\|CDD\|374742	pfam16708, LppA, Lipoprotein confined to pathogenic Mycobacterium. This is a family of lipoproteins found only in pathogenic mycobacteria. These pathogenic lipoproteins may play a role in host-pathogen interactions. Lipoproteins localized to the cell-envelope of pathogenic bacteria are major determinants of virulence. The proteins are localized to the cell-surface via an N-terminal lipidation carried out by a transferase - pro-lipoprotein diacylglyceryl transferase Lgt - which attaches a diacylglyceride molecule to a sulfur atom from a crucial cysteine, and a consecutively acting lipoprotein signal peptidase LspA that cleaves the signal peptide just before the modified cysteine. When the peptidase is inactivated the pathogen has difficulty in replicating inside macrophages.	0.00212222
NZ_CP040503.1\|WP_009198545.1\|917230_918073_+\|SMP-30/gluconolactonase/LRE-family-protein	gnl\|CDD\|369882	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region. This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyze diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE.	4.04405e-66
NZ_CP040503.1\|WP_040323095.1\|936573_938115_-\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP040503.1\|WP_009198536.1\|926370_927201_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	4.30982e-86
NZ_CP040503.1\|WP_009198546.1\|916602_917256_+\|hypothetical-protein	gnl\|CDD\|224473	COG1556, COG1556, Uncharacterized conserved protein [Function unknown].	1.68598e-32
NZ_CP040503.1\|WP_138587095.1\|924016_926374_-\|FtsX-like-permease-family-protein	gnl\|CDD\|223650	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	1.30365e-06

>NZ_CP040503.1|WP_009198532.1|928752_929541_-|response-regulator-transcription-factor
MAEQIDVLMVEDEAALAASTVEYLNLSQIKACAVGSAEEALPAVSKLDPRLILLDVNLPGASGFEFCRRLRKDRDTPVVFISARTGEDDQILALTLGGDDYIVKPYSLALLVAKVRRALARSASGSAGGREAGVYDDGWLAVDLESSRVSVDGAEIPLAAMEFDLLAYLVANRGRVVEKRELLNKVWGGAVTGDGTLAVHVRRLRRRIEPDPDNPVYICTVWGRGYRFREGGASLKAGETPTRAGEAPARAGERPAKAGETL
>NZ_CP040503.1|WP_009198534.1|927380_928637_-|HAMP-domain-containing-histidine-kinase
MKGAVAAVVLAAAAALAILFGSEPAKGFKSDVVPANELVEAVEKSWPDARAADARTGRRFPRVTVVGDDGSLVYSRGRRIDGDRDAMRTGAVGFELVAGGRHVGRMWIYNGWVEKEEEARRAALRLAGGTILAVASFCLLVVAVSRRRLLRPFKQLSFFAREVAQGNLDVPLRMDRNNVFGPFTEAFDIMRDELGRARRAEAAAKESKKQLVAELGHDIRTPVASIAATAELLEAMEASESKREKIEVIRHKAGQIEELMADVARANSEEIASLRVTPVPVGSEDVERWLRAADADEAMADFSLPHCLVSVDRLRMRQVFDNVVANSRKYAGTPIEVTASVDEHFLLIVVRDRGPGVDRGEIEAILGKGVRGSNVKGVPGEGLGLYTSSCLMERMGGALSCRLADPGFAVVLEIPLAR
>NZ_CP040503.1|WP_009198536.1|926370_927201_-|ABC-transporter-ATP-binding-protein
MSATENRNAVREKNNDTAQSERKTSHSKDVIVTKKLSKTFSHKGTQQHVLKNLDLTIRRGGFTVIMGPSGAGKSTLLYALSGMDKPSLGSVVFDGEDLTELSQDKLAVFRRTHCGFVFQQINLLDSMSLTDNAMAPGLLVGKRKAVAARVDALFDLVDVDEATRKKFPGMVSGGEGQRAAIVRALVNEPDVVFADEPTGQLNSENSLRILDLFSRVNRAGQTVAMVTHDLNSALRGDRILYLRDGTIQGELNLGAFETADKDRRDRLAAFLEEMGW
>NZ_CP040503.1|WP_138587095.1|924016_926374_-|FtsX-like-permease-family-protein
MTMRRMFLKRSLRRSAGQFVIVGLLVAIASAMLHLAAVLILQYPATLDDATAKLNTEHIFILLENEKGARDAERIARDDGRVKDHILLQTLRAGATFEYDGKEQISAVTIVEQDKDTRIGRSGVVAEDSKRHADPIWLPYSFKTAGGYELGDPFAITVGEVKHRYHIQGFHQNPVSGVLGSIQVEFRMKASEAAALASAPGMNRVWQLRALVKDVSQADDVAAEISSKVTKAAVQSGTASPVLVSVGWKLLSSVLMIPANVLIFSFILFAAIVASVVAVIVRFAIRSVIVREMPALGTQKALGFRSGHIARLLALPFAIVALAASLAGAAVGVALFPAIRQLVESQSGLQWSPKVGVVGVGAAAGAMLAVVGVTALAVARKVRRIPPVEALRGGEATHSFHSNHLPLRKARGPLTLVLGVKSALQARAQTIMVVIVIAMVAFASVFSVALYSALFKDSRKVVGIFIGDRQDVTVSVLKGRSVEAVRKDLGAMPGVERVQIFDNTRNADVSGRTVSLSVADSYPSSKGSRSVYKGRYPKSANEISLGGKFAKSLGVDVGDEVTVDFQGGKATYLVTGLTQTVVRMGMVASVTIDGAKRMNAAYQPKYATAVLKEGQNIDAFVGKVRTEMKGRYDYVVNSYAISESYVAPYLAMSKTMSFAIFGVAGLVTMLVIGLVVGSAMVRSRRTFGVLKAAGFTNAQLMRQMLACYLPPVAIGGAIGIAIGSVTAIPLFEGLLRSLGVERLDAEMPVPMVAGLGMALLVITALLVMLLARKTRTVTSRELLTE
>NZ_CP040503.1|WP_009198540.1|921619_923443_-|hypothetical-protein
MVSFHELERWSGAPLDSAASEASGLAKRYKDVGDQILDINNADLSGEFVEAEMRRRRALADDASDVSAAYQEAQTDFEQLAQAVSKLVIQAKKVSSIIHAAGGVLTSDGKVRNIDPNCQINLDELMTSGASLLNEETDPGRRLQRFVNVCLQKGKDLLNAAGDLYDSLAHIKKMAVGPKPEIFGWGVKKPNSKWGVEEVNDWWTAMSVEDQKKIIKEHPDWIGNLDGIPTMARHKANVLRLEAERDAVNRRVEELERELKEKQREERKAAKEVRDNSPWNRQGPRHELSDDDPLSPDRRSKELRALLQRRAELNALSLKFPCPKSPAELDALLDKSSADYSLMAFDSPKDGHLRAAVGIGDVDHAKHLQVHTPGMNSSVYGSIVQSDGRWGGGIRDMDTVLKAARAETAADHGESGEGVAGVYNLNYDAPSMGESLNPDRSVLGSKQADIGARKLAGLCDGLQATHAGDPHMVVTGHSYGSTVAGKALRQTTAPDDFIAYGSPGFEAVTNSELNMVPGHTSIGGAEDDKVAWSGWHQSFGPSTPEPHNNLDYEHFSTDKATDADGVHYSGSKGHSEYMNNAENGQMRTSVKNIASVVAGNGIYFPER
>NZ_CP040503.1|WP_040322612.1|920927_921530_-|hypothetical-protein
MNSDVTPTRVSSLSIVEERRQTIGLLLSFYDMLSKEFGVGEWKPMKVQAQVEESLRMNCPVGYSSEYYALAVAGPLAPENWDAALARMEALAKPLGFGPARKDPPGRNGGRSAFFTRRDGARIEIGYKTNSFIRIETGCAKGEVYEGWPAGTEAVPERLRTTGRHEDGDPPETWAPYSPPGSPSAAPTSSFVATQTKGKE
>NZ_CP040503.1|WP_040322614.1|920607_920925_-|hypothetical-protein
MVDRLRYDPQVVDSMLWKFDSAVEQVRESKGESEIAASAGAFVGGGLEGKAEQAARSVAEGRSDYLLRLGAYKEALLKVKSKVEGADADSADGFKRPPRGRNEIV
>NZ_CP040503.1|WP_064230674.1|918414_920070_-|hypothetical-protein
MKRRIRHVSAIASFLSLISVAPAVADVGASGPVSSSAGKSIGLRVGEDPTPAPGNSGSSAGSPGDSQGGADGSQGNTNTPKRSYGVRGYLVTRKAPARSIAGFKTTRDSYRFAIDGREYTLEATPQYTNPSAALARFKTTHAASIAKIRAHFKLPDLSEQTATQYVNALSDQVMAANTPVSSDEIFAVADFSSTLAAPADNAKTEQVLPKLVYATKTKNVSAIIRTGGILDSTIPAASKKNVTLTQKLDSMTGGLKMNPGGSQPSPSATPTIPDGSQPSPSATPTSPDGSQPSQSASPTAPNGEQTSPSAAPSSPDGSQPSQSASPTAPNGEQQQTSPSATPSNPDGSQPSQSASPTAPNGEQQQTSPSTTPAAPTQPQTKKLTVPNVDAAVAYAKKYAFTPNTQQYKYFEHADCTNFASQILAAGGQPTDAYWHPHPWGNSTRHTYSWAVANAFARHWGLNQGTTSWTEFASRVHRGSFVALAYSNGKVYHTAFVTEQADVVSDEYGTYRTFAIAQHTRNYEGWVHGNGLASVWKQRGYWITAEGDSNGQ
>NZ_CP040503.1|WP_009198545.1|917230_918073_+|SMP-30/gluconolactonase/LRE-family-protein
MEKTTQITDVVAFHGEGPAWHASWGGLRIVDMLAGDILTIGSDGSVDRLPTGSSVAAFVRPRAGGGYVVGVERGIALADSAFGAPVPQAEMWADPGVRMNEGGVDLSGRLYAGSMPYDKTPGGAKLYRIGADGAVDVVLDSVTTSNGIDFTADGRFAYYNDTATGGTSVFDVDESGSLVNRRLFHDGDGGRPDGLCVDSEGNVWCAMNRVGKVRLYSPEAEVLGEWELPVRGVTAVTLGGEDLRDVFITTSRETADEPGAGAVFHMRAEVAGQPLRAFAG
>NZ_CP040503.1|WP_009198546.1|916602_917256_+|hypothetical-protein
MKAAKSAREEIFRRIRAAGPIPVPEIPRDYRTRGDGSDVVAEMEEKLVDYTAKVTHAATAADVPAAIAEALSDAASVVVPPGLDPAWAEAAGKGREIHVDEPPLTNAELDRIDAVVTASRVAVALSGTIMLDGAPDMGRRAISLVPDTHVVVLKASDIKATVPEAVAVLGENPTRPTTWIAGPSATSDIELVRVDGVHGPRNLRVIIVDDGEDNSNN
>NZ_CP040503.1|WP_009198529.1|932898_933528_-|anti-sigma-factor
MTERDDIAFGTPEAELLGAAAFDGEPLQPPANVKAELMARISSGGSENARADVVELPRRRTWVRRLAGAAAAVFLAAGGFAAGRAWTMRGMSDETKFNALNQASDYSQTSHKMADGHTIRLVWSYKEHSAALVMPAGMQIPRGKAVQAWSVKGRRMTSMGMYPSGSKARYAFLSAMPDEGESVMLTMEPASGSSAPSSDMVADIPMGKK
>NZ_CP040503.1|WP_040322607.1|933524_934073_-|sigma-70-family-RNA-polymerase-sigma-factor
MHDAHDDLDRLLVAVAKGDGEAFGLLYDRAAGHLLALIRRIVVDADLAEDVLQEAFWQVWKRASSFDPAKGSAKAWLAVLARRRAIDCIRSNESRRLREASSAKFDVECDSVAEAVFSRERRGEVARAVADLDQPVRSCIDAVFFQSMTHVQAAQALNMPLGTLKTHIRNGIAQLREVVEDR
>NZ_CP040503.1|WP_009198527.1|934196_935879_-|redoxin-domain-containing-protein
MFSQILIGLFGGLITGVSPCILPMLPIIFLAGATGASSDGKSPSRKYPLLVTLGLVVSFTAVTLLGSTVLSLLGLPQDFIRWAGVAFLALIGVSLMIPKVEEWLEKPFARIRMKQVDKRSNGFVFGLVLGTAYVPCAGPVLAAISVAGSTGRVGAETAALAISFAVGVAVPLFFFALAGRGVTERIKGYRKRQRGIRMAAGGAMIALAAGIVFDLPARIQRALPDYTANLQRAADEYLHDEQSGKFTCSPDSAELADCGPQPEITGIAAWFNTPGGRALEHKVPAGGVRLVDFWAYSCINCQRSAPGIEKLYKAYRDYGLQVIGIHSPEYAFEKVPENVKGGAQKLGITYPVAVDSDLKTWSAFDNHYWPAHYLVDAQGKVRHIHYGENGEARTERLIRELLAKQNPGKKLPDPVFSDKDDSKADAARAEEANPETYLFPDRARYYDGKVPFAEGTVDYGQSSDPKPGKFNLSGKWTADGESAAPASEGASVKLGLHSRRVYLVASGKGEITYTFQGRSYTRKVEGIPNAIDLLPGDAAKRGTLTVTASGGVRLHSFTFG
>NZ_CP040503.1|WP_040322606.1|936043_936385_+|hypothetical-protein
MARKFFASTALASVALVAGLGLAACGADDQPSDKMSTTQNEKMSDKDKTSGDDKMSDKDKTTGKDTMTDKDKPSDKDKMTDKDKPSDKDKTTDGSMKDKGTDGSTKNGSMTDG
>NZ_CP040503.1|WP_040323095.1|936573_938115_-|lysine--tRNA-ligase
MTTNETPAAAPQNDDLPGQISVRLAKRQKMIDEGIEPYPVELPVTTTIPELREKYGSLEAGVELADVAVGIAGRVMLSRSSGKIAFATLQDGPGNRIQVLLSLANVGEEAFARFKADVDLGDHLFVEGYIGTSKRGELSVFARSWRIASKAIRPLPKVYTNADGEDVTLSEESRVRMRHLDLIMRPAARDMVRLRAGVTKSLRANFDDRGYLELETPMLQTIHGGAAARPFITHINAYNQDLYLRIATELYLKRAVVGGVDKVFEINRNFRNEGADSSHSPEFTAIEAYEAYATYDTMAELTQSLVQRACLDTLGTTTVALSDGTEYELGGQWARIDLYTSISEAVGEEVTVETPREKLEAIADRHGISVAPYWVAGKIAEEIFEELVGSKLWEPSFVLDFPEDTSPLTRPHRSKPGLTEKWDLYVRGIELATAYSELADPVIQRERLVAQSLEAANGDPEAMQLDEEFIEALEQGFPPCGGMGMGVDRLLTAMTGLGIRETITFPFVRPQGK
>NZ_CP040503.1|WP_009198523.1|938402_939164_-|hypothetical-protein
MQASANVIVPQKAWDDLRSFLAGDGLHEGGMAELARLGFFEDGCLTDVARKLVAPYREPVGHVELLMNEGGIRRNAVAWIDENRESCVAQTLDDSVALSSYETAEFPVVMVDLLDVGPRPVAHPTATTRVPKEWVLGLLEPSEGEPSEGGAGADSASGPSVKSPVGSVRDRLADEMSTFWPEVRESLREGDWKLWAVYSRPATETAGTRGSVCVLDTSKGYFRVVFDGDSAVIRPAASLQVWCALAYVIAPAA
>NZ_CP040503.1|WP_009198522.1|939163_939589_-|hypothetical-protein
MITLPFDWRQVDASDDPEMEVLAHGPMTGYGYAPTVIVRRLPHLEGGPEAGMSAMLEGGMREDPTHRIIDVGETVLAGYPAAVAVFTYCIEQKSLTQILYFATPDELPSGYVLALIAATPDFGPMAGVFADIVASFQPEGF
>NZ_CP040503.1|WP_138587096.1|939871_940456_-|hypothetical-protein
MTKTLETVAREFAEEIKSTIVKALPVKTTNLDVRLSEKDGTGRVVLETSEPIELSCDHRPLLYLAIKYRFTLNGTHSFLKVESSSFCVLPSKSGNPLFRYEYLDAPSDSTPSAHLHVHGHRDEIVKLLYVSERSRSNRAQSSNAREKGLMDPKKVKHLAELHFPLGGPRSRSSTNCRIKPMKRKGRSMLFSFNR
>NZ_CP040503.1|WP_009198519.1|941211_941661_+|C5-O-methyltransferase
MHLTLPDSWQVRDVPDEYQAAKYIAMGPRGYLGYSPSAVVTYEEGVSGTLDDWAAAMIEESSQTIPGLHVIDVGGLEIAGHPAIVHALSMTVETVNVTQMQFALLTGGRRSARRPGYVVTVTCASADLPTIGDSLIDMATSFEPSGGEQ
>NZ_CP040503.1|WP_009198518.1|941657_942371_+|hypothetical-protein
MSSDTISVVFPTDEWEALKDLLDGEGAPLDLMGDLEQRGFLENGALSQSAAKLLQAYQQAAGAVRLYVCDAGVVREARTWVAKDRSVLLDITDGEVTVLRRQEPGQFPLTLLEMLGIGPRPRLPEGALPGFSARIIRDLLRPSDSDRNAKARDDLAETLRGVWPAASEAIKKDDWRLWLIQSFDVAVGEPQARTTVCVLDTSAGMVGITVDDDTAVPVAVTSLEVWRAVAAAIAPWS

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Crispr_ID: NZ_CP040503_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040503_10

969013-969162

Orphan

Consensus_repeat	Method
CTGATGCTCACTGCCCGCGGGGAACAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP040503_10

>merge|NZ_CP040503|10|969013-969162|CRISPRCasFinder
CTGATGCTCACTGCCCGCGGGGAACAAGGTGTGAAGAGGAAAGTGCGCCCAGAGGGGTTGAACTGATTCTCACTGCCCGCGGGGAACAATGTGGCCAATCGCAATTCGGACGTGAATAAGGATGTCATGCTCTCTGCCCGCACGGAATAA

>NZ_CP040503|10|9|969013-969162|CRISPRCasFinder
CTGATGCTCACTGCCCGCGGGGAACAA	GGTGTGAAGAGGAAAGTGCGCCCAGAGGGGTTGAA
CTGATTCTCACTGCCCGCGGGGAACAA	TGTGGCCAATCGCAATTCGGACGTGAATAAGGAT
GTCATGCTCTCTGCCCGCACGGAATAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040503.1\|WP_138587099.1\|970365_970758_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009198495.1\|962364_964062_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|366353
NZ_CP040503.1\|WP_050758781.1\|955311_955899_-\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223707
NZ_CP040503.1\|WP_009198492.1\|966101_967337_+\|homoserine-O-acetyltransferase	unknown	unknown	gnl\|CDD\|234678
NZ_CP040503.1\|WP_040322593.1\|977649_978003_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_083786123.1\|957899_959315_-\|D-alanyl-D-alanine-carboxypeptidase/D-alanyl-D-alanine-endopeptidase	unknown	unknown	gnl\|CDD\|200042
NZ_CP040503.1\|WP_040323087.1\|959318_959819_+\|inorganic-diphosphatase	unknown	unknown	gnl\|CDD\|376376
NZ_CP040503.1\|WP_009198479.1\|975940_977650_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283837
NZ_CP040503.1\|WP_009198499.1\|959894_961088_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP040503.1\|WP_009198485.1\|971095_971983_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379248
NZ_CP040503.1\|WP_009198480.1\|975326_975944_-\|DUF4853-domain-containing-protein	unknown	unknown	gnl\|CDD\|374393
NZ_CP040503.1\|WP_083786172.1\|952232_955232_-\|ATP-dependent-zinc-metalloprotease-FtsH	unknown	unknown	gnl\|CDD\|273520
NZ_CP040503.1\|WP_009198483.1\|972823_974716_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009198503.1\|955852_956908_-\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|238950
NZ_CP040503.1\|WP_009198493.1\|964638_965925_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|225428
NZ_CP040503.1\|WP_009198481.1\|974864_975053_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009198477.1\|979007_980441_-\|DUF4357-domain-containing-protein	unknown	unknown	gnl\|CDD\|376177
NZ_CP040503.1\|WP_009198502.1\|956907_957888_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274833
NZ_CP040503.1\|WP_009198488.1\|969594_970293_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227511
NZ_CP040503.1\|WP_138587100.1\|972215_972827_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040503.1\|WP_009198495.1\|962364_964062_-\|C40-family-peptidase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	1.42846e-20
NZ_CP040503.1\|WP_050758781.1\|955311_955899_-\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	2.14296e-92
NZ_CP040503.1\|WP_009198492.1\|966101_967337_+\|homoserine-O-acetyltransferase	gnl\|CDD\|234678	PRK00175, metX, homoserine O-acetyltransferase; Provisional.	1.16236e-167
NZ_CP040503.1\|WP_083786123.1\|957899_959315_-\|D-alanyl-D-alanine-carboxypeptidase/D-alanyl-D-alanine-endopeptidase	gnl\|CDD\|200042	TIGR00666, D-alanyl-D-alanine_carboxypeptidase_DacB, D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family. In E. coli, this protein is known as penicillin binding protein 4 (dacB). A signal sequence is cleaved from a precursor form. The protein is described as periplasmic in E. coli (Gram-negative) and extracellular in Actinomadura R39 (Gram-positive). Unlike some other proteins with similar activity, it does not form transpeptidation. It is not essential for viability. This family is related to class A beta-lactamases. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	1.68437e-47
NZ_CP040503.1\|WP_040323087.1\|959318_959819_+\|inorganic-diphosphatase	gnl\|CDD\|376376	pfam00719, Pyrophosphatase, Inorganic pyrophosphatase.	8.85717e-80
NZ_CP040503.1\|WP_009198479.1\|975940_977650_-\|hypothetical-protein	gnl\|CDD\|283837	pfam06259, Abhydrolase_8, Alpha/beta hydrolase. Members of this family are predicted to have an alpha/beta hydrolase fold. They contain a predicted Ser-His-Asp catalytic triad, in which the serine is likely to act as a nucleophile.	1.81821e-19
NZ_CP040503.1\|WP_009198499.1\|959894_961088_-\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.78544e-56
NZ_CP040503.1\|WP_009198485.1\|971095_971983_-\|hypothetical-protein	gnl\|CDD\|379248	pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat.	3.7017e-05
NZ_CP040503.1\|WP_009198480.1\|975326_975944_-\|DUF4853-domain-containing-protein	gnl\|CDD\|374393	pfam16145, DUF4853, Domain of unknown function (DUF4853). This family consists of uncharacterized proteins around 220 residues in length and is mainly found in various Actinomyces species. The function of this family is unknown.	6.23568e-43
NZ_CP040503.1\|WP_083786172.1\|952232_955232_-\|ATP-dependent-zinc-metalloprotease-FtsH	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP040503.1\|WP_009198503.1\|955852_956908_-\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|238950	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.	5.61483e-55
NZ_CP040503.1\|WP_009198493.1\|964638_965925_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|225428	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism].	0
NZ_CP040503.1\|WP_009198477.1\|979007_980441_-\|DUF4357-domain-containing-protein	gnl\|CDD\|376177	pfam18755, RAMA, Restriction Enzyme Adenine Methylase Associated. An alpha+beta fold domain associated with restriction enzymes across prokaryotes and fused to JAB deubiquitinases, and chromatin proteins in a wide range of eukaryotes. The domain is predicted to function as a modified-DNA reader domain.	2.33363e-06
NZ_CP040503.1\|WP_009198502.1\|956907_957888_-\|hypothetical-protein	gnl\|CDD\|274833	TIGR03883, DUF2342_F420, uncharacterized protein, coenzyme F420 biosynthesis associated. A phylogenetic tree of the DUF2342 family (TIGR03624) consists of two major branches. One of these branches, modeled here, is observed almost entirely to be found in coenzyme F420 biosynthesizing species of the Actinobacterial, Chloroflexi and Archaeal lineages. The few organisms having genes within this family and lacking F420 biosynthesis may either have an undiscovered F420 transporter, or may represent F420-to-FMN revertants. This family includes a Chloroflexus Aurantiacus protein whose crystal structure has been determined (PDB:3CMN_A). This has been annotated as a putative hydrolase, but the support for that assertion is untraceable. There is no cofactor present in the structure.	5.77201e-74
NZ_CP040503.1\|WP_009198488.1\|969594_970293_-\|hypothetical-protein	gnl\|CDD\|227511	COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton].	0.000523119

>NZ_CP040503.1|WP_009198492.1|966101_967337_+|homoserine-O-acetyltransferase
MPINLPNFLVGHPPLDHVTDAEPIGDFDTGYYPRPRLTIPVTGAWREGDDPGERRFADIGPVELELGGRLPNVRMAYETWGKLNEDASNAILLCHALTGDSHATSRDGKSGWWKDIVGPGLAIDTDRYFVVCPNVLGGCQGTTGPADLAPDGRPWGPRFPEATIRDMCAAEAKLADLLGVERWALVAGASFGGNRTMEWAASFPERVGAIAVLVSGPASTAEQVAFAHFQLKAVQGDPKWRGGNYYDAPEGDGPAFGLGFAREIAHLTYRCAPELDTRFSRNAQEGEDPLHGGRYAVESYLDYHAYKLAMRFDANSYLVITRSFMTHDIGRGRSGVDKVLENMTIPALVVEVDSDRLFYPKDMRMLAAALPGCKGVATVHSRHGHDGFLIENDQVTAILREFLGELNEGRA
>NZ_CP040503.1|WP_009198493.1|964638_965925_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MTDKKWGFDTLQIHAGQTPDSDYGSRALPIHQTTSFVFPDAETAAGRFALTTPGNIYTRITNPTQAVLEERLAALEGGAAALLVASGQASEFYTFLNLAQAGDEIVASPSLYGGTYNLLKVTLAQVGIVVRFVENPDDPESWRALVNDRTRALYGESIPNPKGDILDIEALSEIAHQNGIPLVVDNTIGTPYNVRPFEHGADIVVESTTKFLSGHGTSLGGAIIEKGDFDWANGKFPLLSEPDESYNGLTFASIGPGAFVTRIRAVLLRDTGAVVSPFNAFLLAQGLETLSLRVERHLSNAKAVVEFLDRHEGVESVRHSSLVSSPYYELAQKYAPRGAGSVFTFEIKGGADAGKRFIEALKLFSNVANVGDVRSLAIHPASTTHSQMTEEELLAAGITSGTVRLSIGIESIEDILADLDQAIAAATA
>NZ_CP040503.1|WP_009198495.1|962364_964062_-|C40-family-peptidase
MSIRKWYKGASGAIALALSAAVVLPARADDGGDADIAASKEAEQRTKADISNTEARLTQIGVKANKLKVGAAKAEAASIAAQQRLSTSIGEAMGAQDAVDSADKQVDAARRQLSGISTSIYKHGARAVAGGRFSLGAADYRQAREKARAYRILANKTNRDLQRFKSARFEAATLQKKADDKAAAEKDVAHKADEASAEASRVASNAETEIRTISAERDRLISKLAAQKGTTAELVRRQQDEKEAAAKAEAEQESQRVVQTANERALRAASQEAAEQTSPQQADGQQAGPQQAESSSAAQAAPAAEGGEKPAAADPSASQAAGSQAASQPTPAQEKAPAPEKPSGQEQAPAAPAAREKAPRAEAREQSQASKRAEAERQRQAQAAAQRRAQAAAAQRQAQQAAAEKQAAAQKAAEQRAAAQAAAQKQAQERAAAEAARQKQAQAGGGSSSAVGAQIVAYARQFAGVRYVWGGTNPSSGWDCVGFTHYVYAHFGRETPRRTGSYLGQFWKGYKVVPASQRQPGDLMWWPGHTGIYTGNNMHIAAWNPSMGTQERKVWGSPVYLRIVG
>NZ_CP040503.1|WP_009198499.1|959894_961088_-|MFS-transporter
MTVPHDPPTGGTTPARALVVSSAALFTDMLVHGLAVPVLPRLPAVVGAGSAATGVLFASYAAAMIVATLFAGRVVDRHGPRTPLLIGLGGLAAATLLFATGGPYWLLMVARLAQGIAGGMSWVAALCLIAATTPMEKRGQSMGVALSTITLGVLVGPPLAGLLVEHFGTASPFLFAAAVAVVDGAMRIILVKGSPRVTDDVAGPLAVLRVPGSFSIVLAVVVGAAVLSGVEPVLPVHLKASSLTVGLLFGLAVLASITANPIVGRFVAAVSPRLFVGSGVVAAATALVVIGAADEMWQTSAGMVLLGASSALLLTPSTTLISQQGSRSVPPTLGGSFALYNLAYAGGLAGGPLLTGFAVQRAGFAAAMAVAATVLAGLGIVAVARLPRSLQEPVDLA
>NZ_CP040503.1|WP_040323087.1|959318_959819_+|inorganic-diphosphatase
MEFDVTIEIPKGNRNKYELDHHTGRIRLDRMLFTSTRYPDDYGFIDDTLGEDGDPLDALVLLDEPTFPGCVIRCRALGMFRMRDEKGGDDKVLCVPAGDQRASWRTEIDDVSEFHRLEIQHFFEVYKDLEPGKSVEGAHWVGREEAEAEIKASFQRALDEHYYDHC
>NZ_CP040503.1|WP_083786123.1|957899_959315_-|D-alanyl-D-alanine-carboxypeptidase/D-alanyl-D-alanine-endopeptidase
MRTPSSVARRAMAAGPCETCIVKRMTVLATALAVALGGYVVADAYDVTPGFLTTRPTESEALPYPSVSSASAPEALPTWKEDAKVDNAAVTSALGSLAASPEAHGHVSVVVADAASGKTIAQLEPDTPRAPASNMKIVTAAVALRVLGPETTLKTTAKIEGKRLYLVGGGDALLGAGGANPAAVNGRAGIGELADKAADAARKAGVTEVVVDSSLFSGPQRNPSVTGGNASFVMELRPLAVNQSRNSGKAYTANPDVQAGQAFAKELAARGVPVSGSVRRGQAPKQAREAASVESAPVRDLVDFMLKHSDNTTAEILGHLIAVKSGEPASFEGAGRATLADLKKIGVKASGVVIDDNSGLSPKNRLSASLLNEIVGKVASCYGCALESIASGFPVSALDGTLDDRMHGSAAAGKVRAKTGTLSNAASLSGFLETKNGRLLTFSILIDGIPDGSFTSARHAIDGFVVSLAGA
>NZ_CP040503.1|WP_009198502.1|956907_957888_-|hypothetical-protein
MLRWRRKGGVGDGACSIAGDTVVSMATINPEMSRSVARWLSGAGPSVSATQARAVVDQLHSQARRAPEIVADVTGLSEAAAAAQEIPVFVVDRAGWAKAAADSAGGLLGPALAAGTGKLADFFGSAELALGASVLAARVLGQYDPLAKRLLLVAPNAAAFAAKYSLDRRDLSLWISVHELTHAAQFAAAPWIVDYLVSRLRSLLEQDDVDFESGSAAEAMSMMSLLEGHAEFVMNAVPLSLMPSKRRLVSSMERRRAAKNPLKSALSKAFGLDLKAAQYRRGSAFVDAVVDVVGHAGFNKVWESPLHAPTPEEIDAPSAWIQRVGA
>NZ_CP040503.1|WP_009198503.1|955852_956908_-|tRNA-lysidine(34)-synthetase-TilS
MGGPNPALARTRRAVEEAFGAAGVGAGSSVLLAVSGGSDSMALAQAAVFVCRREGIVASSLTVDHGWREGSADEAASVRSALEAMGVESAGVARVESKGGGGLESAARAARYAALAEAARSMPGRAAVVCGHTADDQAETVLMGLGRGSGPRSIAGMPAVGACPGAPDVPLVRPFLGLRRADLRQALASEGVEWVEDPTNDVDSPVRAADGSLLRRAAVRHRCMPALEDSLGPGVVEALARTAAMIREDLSALDGFAEEIDAKLGAEPSVRELAGLPPALRTRILRRRAIDGGARPGELTSWHIATLDSLVSRRRGRSSLDLPGMRVTIDEGRITFDGAVPANREENCGSS
>NZ_CP040503.1|WP_050758781.1|955311_955899_-|hypoxanthine-phosphoribosyltransferase
MGQFQRIGRRTVEAADMGGDLEKILLTAEQIDARLAQLAAQIDEEYRGRDLLLVGVLRGAVMTMADLSRKIRIPLEMDWMAVSSYGSGTKSSGVVRILKDLDTDIQGRNVLIVEDVIDSGLTLSWLRSNLLSRGPESVRIATTLRKPEAAKVAIDVDYVGFDIPNEFVVGYGLDYAERYRHLPFVGTLAPHVYGG
>NZ_CP040503.1|WP_083786172.1|952232_955232_-|ATP-dependent-zinc-metalloprotease-FtsH
MQIEAESAEERADESNGDEPGRAEQSTGGSGRTDADAPRRRSAGASRPERGSADGVKNGQKETPKDAKDRKKRSMRRMFTAFFFVGVVASGLWLFFGGEHFSAVKTSEGISLLKGKQVERVQITEGTQQVRLWLSQPTKATDEKGKSHDVGKRVQFSYVEPQAEQIARLTEQAKPKLGYDSIVPQASIWSSILTMAVPMLIIIVAFMILLPRMQSGMGAFGRIKDRKQLDPDKPDVTFNDVAGEDEAVAELREITEFLTAPERFHALGAEIPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISASEFVEMFVGVGASRVRDLFNKAKENAPAIVFVDEIDAVGRGRGVGIGGGNDEREQTLNQLLVELDGFDSHSNVILIAATNRPDVLDPALLRPGRFDRQISVDAPDLRGREAILKVHAKGKPFAPDVDLAMVARRTPGYTGADLENILNEAALLAARFGRRAIGVPDVDEAIDRVMAGPQRRSRPMNDQDKLLTAYHEAGHALTAAALHNADPVTKVTILPRGRALGYTMVLPTEDRYSVSRNDLLDQLTYAMGGRVAEEIVFHDPTTGASNDIQKATSIARSMVTEYGMSAEVGIIRLAAEDADPLERTMGGGGEVHSDGMVSAIDVEARGLVENAHREAWAILAQNRGILDILASRLMEKETVLESELKEIFADVVKAPVRERWHVFEVPAELLAATEIPPIEIRSPQPVKGRHAAAPVDSDTPAAPSPAAPAPSAPVSSDAPSAAANAGGSAAAVPEGAPAMPAASAIPEGDGEPEEAAVKPLTVGEPGTVLSPSVPAAPSAQSPDPLGDVPIPEVSADAAPGAPLDSSTPNLPGDPKLPDSPADAAPDSLSDPASSNPANEAGSSDARDGLPATEQLPKVDPLSATDRLPKVDPLSATDRLPKVDPLSATDRLPKVDPLSGPSPLSSSASPDLLSAPGDPLSAPSPLEPRSGHSRTAADRPLSGASPEDPADDADSDRGAGPSGKAEPNDG
>NZ_CP040503.1|WP_009198488.1|969594_970293_-|hypothetical-protein
MSDFAGAGDHLCAVVEGQVRCWAGNSYAQSTGEVGSPPGDVYPKDSRPAALPEKADTVTASEGSSCARGLSGSVYCWGTNRRGELGVAADIGRHAPHSVVKVPLPRPAVKLFDRRTATSCAGLDDSSVYCWGGIRAPDGAYAPGPVRLATGTNITDMSGKIALTAAGRLVYVEPGPYNPATRSIPAALTALDARGRVVAISGHPHGIDCWVTATGAAYCLNTDKQTVQIAQY
>NZ_CP040503.1|WP_138587099.1|970365_970758_-|hypothetical-protein
MKIFKPHASGGQYGGSVFLVKRFLGVFGLVVCVVAALTGSVSPEGDRLNTYRSDFASVSVGKYQLCLKTKDREAYCFSPLLVKGNRWNSGEPISLAPSGKDAKKVFYTGDHFCVIDTDDDLKCTGLNDRR
>NZ_CP040503.1|WP_009198485.1|971095_971983_-|hypothetical-protein
MSVDHVGDVTSLKRDTDNLCFLGRKGDVRCLGPNDMGQISPNFDISYFHQPTTIALPGPASSIAVGRRHGCAIVDGSVHCWGNDAYGQASGVGREPELHVHYRYGLKAAVRVNLPEGIKQVHASNETTCARGDSGSVYCWGKNRFGEVGVPDGIDVESGQSVAKVPLPQPAVKLLDERGGKTCALLADASIHCWGSFQGSRKPIPTGPVALKVSTRLQEISGQMGMASDGKLVFIDFRPFDPRDGFIKTRLTPIDTFGKVKSYSGSYRSLQCWVLVSGAAYCRDERGRTTQIGQY
>NZ_CP040503.1|WP_138587100.1|972215_972827_-|hypothetical-protein
MKTLTESLEANLEADLKDIYGRAATVSHADSANIRQDIKETCDKYQSMFSAIKGGSLASDAAQAGELDRKEATTANAMSVLVQKVGHIPVIGEVISTGYALQPSVEFNDHVKNVYQEHNADNANTSADVSTISRRMLSHVIVNNVSGWQNELNTFNNGIDDEDSRFMDRNGNWLIKIDPNTGKFEGDRLRVQQYNRFLLSWRP
>NZ_CP040503.1|WP_009198483.1|972823_974716_-|hypothetical-protein
MTWSDVPGEEALPNLKDSGEGILQLGKGIANAGAAMQDTQVIAVGGEVEGWTGLAATAHQGQATFLQKAIQKAIDLHPKIPALLDKYVQEHAKTRSAITGLQHDWDEARTVHLRRIAELAIQLKAGLYPGDDDEYEKDRAKADEACEKTQKEVKAKYEAAVRSLNELAKSTGDSIFGLAESFAPKLRVAGEGNGSIDRNNLGVELFGGSGGVLAAQARWEDARADADKAAKVFLTKDGKLKGNISQKDLDSFNAAYGERMAKDPFFANAFAWRFGANNAIKLVSQLDGSHGAFPQETVQATRTSIGSAIILGTGGIRKGLSEEESSVWNAWNSGAKYLTSSDGTLIDESRDKYLDDLKKAGNKRWIGGANLDNAGASGYMLISGTIANSAQTHSELALGDPFLNGPHAIGRDIVKWDYENPQEANNYHSDIYTPKTTTWDPVHNMLVAMDGNPDAARTFLASDGPYEIAESGDGKQPVKYPISMTRYLVGNRHFVPLSGTTEALYVDRGKTLANLLDEVSSDKTHKESSLVARDYLQGYTDGLKRSDATFKGQDAFGYGNVELREKAGDILKEYSKDLASELKGYTGVPGAPHGNRQNGEYSLSLTKAGTTALFEGKSDFSRTSELVNPQ
>NZ_CP040503.1|WP_009198481.1|974864_975053_-|hypothetical-protein
MSDLSFDRDRAGITAKGHWTDSDTFISIGFGYAELEGECDVVKDPVLEDSEHLFRACLHFVN
>NZ_CP040503.1|WP_009198480.1|975326_975944_-|DUF4853-domain-containing-protein
MRAARTRRWFVLALILGLTAGCAEDMSKPGAGELLGQGSKDYWDRQTIEDYQRKTIPAIEEFMRRLLADGGGQHYAAEGANELTLCETKTDGREYMSAVYETQVSVPPTKIRAIAKETIEKAGLKIEQQDDERDNATGFGWSDSKNGGFLMLSAHPTKGISFHFVSGCRPSATKIDDPPPLKGVPTVPFTPQQETPSPSAASPSS
>NZ_CP040503.1|WP_009198479.1|975940_977650_-|hypothetical-protein
MTSWRDAIEWRQDRLKVQLEPLRARRKQLIEAYEKLQSMEMTVTSRGLTADAILYALQQFEARISYLINDVSETMMVMAQMADGVWTVQTLILECKQKAKTHGLEIRDGRLMSDSGQSEDEFASAAAELKPMIKGVLENADSIDEAYYTRLTAVADGSYKSSEEGFSTSPGLPDLPQKGWTMGESAAWWSGLTDSEKESMVREHPELIGNRDGIPMEWRDKANRARLPQEIAEMKSNVAEAKSRMDKAESTVGKDSLEYLNATNDYNRYRKKLGDLEGLQKILEKNDSDVASNPSKTRQSLIYLDTKSSSRVQAGVALGDVDRAKTVQMVVPGMNNTVGDNMDGLINDAQKVRNTTFEESRNHSSSAGIHDKGDIATVAWMYRTPQNAEVATTDLAEKAAPKMDRFMEGVQTSRQAMGVPKAEINVGAHSYGSTMAGIAVGKVREGTVHNIALYGSPGSGVQDVREYNIDGQTYVSSVNTNDYVQGIGPDGSFGKDPMEMRGFKHLANNPENDSQCKYIPTGAGSGVTKFCSKGDDNPFGRHSEYLKTGTGSLKDISRIMGGMEPEGEK
>NZ_CP040503.1|WP_040322593.1|977649_978003_-|hypothetical-protein
MSDIYIVDAEYYMLASGAGELVQNPGTGDVETPVREAARGIPGASSVSASERAGEAIDSRCRSLMADIGQFKSDVEEAIKSMAGTDQESAAAMDRILEHVKGYPKAKPGSKGKARIV
>NZ_CP040503.1|WP_009198477.1|979007_980441_-|DUF4357-domain-containing-protein
MVLYALANGRIAPAQAVRPRGSIAAEVLGAIRESILEVVDVPLLPVMWEESDAAGKHGQSLVAIDQDGTVVMVNLRQRLTSVDLYEVVSRSGRYAHTGPVDMAQVYSKGAKEFGPDWEEFRSGRPPLGGVSPRLIVIALDIDEDVLPVFSTLSERVQLLSASIFDTNGVRQVSIEACRKRGSGPSADETVEFLPAPDVESGEETKPRRRGRAREAQEFQPTLTIPATPRFTAFPGHIDSQDDADVTDPAQTLIVEAVEAPLAEQPQPVDAEAGDRPTGRRSRRSAHREQGQGAAREDEKPDQQQDQQADQSAQEDPFNQMKIPVIPAWRVTEDGADETPTYISARYDQEVKRPRTEQLLWEKSAPKRDGKRRQPQTFSETTAANASSDAVARAAERELLTPAGRLVAIASRSVTPLTLEIWKNGSPTMATLTSTGTLLLGHTSYQDPSKAAAEVLGRNDVNGWQLWKTREGRLLGEL

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Crispr_ID: NZ_CP040503_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040503_11

983625-983711

Orphan

Consensus_repeat	Method
AGACGCTCCCGGGGCGCCGGGCATTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040503_11

>merge|NZ_CP040503|11|983625-983711|CRISPRCasFinder
AGACGCTCCCGGGGCGCCGGGCATTGCAGGCGGCGTAGCCGTGGACCGTTTTAGCGTTCTAGACGCTCCCGGGGCGCCGGGCCATTG

>NZ_CP040503|11|10|983625-983711|CRISPRCasFinder
AGACGCTCCCGGGGCGCCGGGCATTGC	AGGCGGCGTAGCCGTGGACCGTTTTAGCGTTCT
AGACGCTCCCGGGGCGCCGGGCCATTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040503.1\|WP_009198481.1\|974864_975053_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_138587099.1\|970365_970758_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009198483.1\|972823_974716_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_040322593.1\|977649_978003_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009198474.1\|984154_986272_-\|ferrous-iron-transport-protein-B	unknown	unknown	gnl\|CDD\|223447
NZ_CP040503.1\|WP_040322589.1\|994239_995568_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379114
NZ_CP040503.1\|WP_009198472.1\|986882_989603_-\|pyruvate,-phosphate-dikinase	unknown	unknown	gnl\|CDD\|236446
NZ_CP040503.1\|WP_009198468.1\|992330_993824_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238624
NZ_CP040503.1\|WP_009198469.1\|991713_992157_+\|YjdF-family-protein	unknown	unknown	gnl\|CDD\|378596
NZ_CP040503.1\|WP_009198485.1\|971095_971983_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379248
NZ_CP040503.1\|WP_082902951.1\|986268_986493_-\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|214896
NZ_CP040503.1\|WP_009198480.1\|975326_975944_-\|DUF4853-domain-containing-protein	unknown	unknown	gnl\|CDD\|374393
NZ_CP040503.1\|WP_009198479.1\|975940_977650_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283837
NZ_CP040503.1\|WP_009198471.1\|989899_990298_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009198476.1\|980487_983559_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP040503.1\|WP_009198475.1\|983738_984158_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_083786122.1\|995572_996187_+\|RloB-domain-containing-protein	unknown	unknown	gnl\|CDD\|379341
NZ_CP040503.1\|WP_009198477.1\|979007_980441_-\|DUF4357-domain-containing-protein	unknown	unknown	gnl\|CDD\|376177
NZ_CP040503.1\|WP_009198470.1\|990294_991233_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|339675
NZ_CP040503.1\|WP_138587100.1\|972215_972827_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040503.1\|WP_009198474.1\|984154_986272_-\|ferrous-iron-transport-protein-B	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	1.15321e-165
NZ_CP040503.1\|WP_040322589.1\|994239_995568_+\|ATP-binding-protein	gnl\|CDD\|379114	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system. Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.	4.2004e-26
NZ_CP040503.1\|WP_009198472.1\|986882_989603_-\|pyruvate,-phosphate-dikinase	gnl\|CDD\|236446	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional.	0
NZ_CP040503.1\|WP_009198468.1\|992330_993824_-\|amidohydrolase-family-protein	gnl\|CDD\|238624	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	2.1935e-71
NZ_CP040503.1\|WP_009198469.1\|991713_992157_+\|YjdF-family-protein	gnl\|CDD\|378596	pfam11208, DUF2992, Protein of unknown function (DUF2992). This bacterial family of proteins has no known function. However, the cis-regulatory yjdF motif, just upstream from the gene encoding the proteins for this family, is a small non-coding RNA, Rfam:RF01764. The yjdF motif is found in many Firmicutes, including Bacillus subtilis. In most cases, it resides in potential 5' UTRs of homologs of the yjdF gene whose function is unknown. However, in Streptococcus thermophilus, a yjdF RNA motif is associated with an operon whose protein products synthesize nicotinamide adenine dinucleotide (NAD+). Also, the S. thermophilus yjdF RNA lacks typical yjdF motif consensus features downstream of and including the P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the S. thermophilus RNAs might sense a distinct compound that structurally resembles the ligand bound by other yjdF RNAs. On the ohter hand, perhaps these RNAs have an alternative solution forming a similar binding site, as is observed with some SAM riboswitches.	2.41047e-36
NZ_CP040503.1\|WP_009198485.1\|971095_971983_-\|hypothetical-protein	gnl\|CDD\|379248	pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat.	3.7017e-05
NZ_CP040503.1\|WP_082902951.1\|986268_986493_-\|ferrous-iron-transport-protein-A	gnl\|CDD\|214896	smart00899, FeoA, This entry represents the core domain of the ferrous iron (Fe2+) transport protein FeoA found in bacteria. This domain also occurs at the C-terminus in related proteins. The transporter Feo is composed of three proteins: FeoA a small, soluble SH3-domain protein probably located in the cytosol; FeoB, a large protein with a cytosolic N-terminal G-protein domain and a C-terminal integral inner-membrane domain containing two 'Gate' motifs which likely functions as the Fe2+ permease; and FeoC, a small protein apparently functioning as an [Fe-S]-dependent transcriptional repressor. Feo allows the bacterial cell to acquire iron from its environment.	3.71335e-07
NZ_CP040503.1\|WP_009198480.1\|975326_975944_-\|DUF4853-domain-containing-protein	gnl\|CDD\|374393	pfam16145, DUF4853, Domain of unknown function (DUF4853). This family consists of uncharacterized proteins around 220 residues in length and is mainly found in various Actinomyces species. The function of this family is unknown.	6.23568e-43
NZ_CP040503.1\|WP_009198479.1\|975940_977650_-\|hypothetical-protein	gnl\|CDD\|283837	pfam06259, Abhydrolase_8, Alpha/beta hydrolase. Members of this family are predicted to have an alpha/beta hydrolase fold. They contain a predicted Ser-His-Asp catalytic triad, in which the serine is likely to act as a nucleophile.	1.81821e-19
NZ_CP040503.1\|WP_009198476.1\|980487_983559_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.86576e-79
NZ_CP040503.1\|WP_009198477.1\|979007_980441_-\|DUF4357-domain-containing-protein	gnl\|CDD\|376177	pfam18755, RAMA, Restriction Enzyme Adenine Methylase Associated. An alpha+beta fold domain associated with restriction enzymes across prokaryotes and fused to JAB deubiquitinases, and chromatin proteins in a wide range of eukaryotes. The domain is predicted to function as a modified-DNA reader domain.	2.33363e-06
NZ_CP040503.1\|WP_009198470.1\|990294_991233_-\|hypothetical-protein	gnl\|CDD\|339675	pfam16264, SatD, SatD family (SatD). This family consists of uncharacterized proteins around 220 residues in length and is mainly found in various Streptococcus species. The function of this family is involved in acid resistance.	3.74282e-05
NZ_CP040503.1\|WP_083786122.1\|995572_996187_+\|RloB-domain-containing-protein	gnl\|CDD\|379341	pfam13707, RloB, RloB-like protein. This family includes the RloB protein that is found within a bacterial restriction modification operon. This family includes the AbiLii protein that is found as part of a plasmid encoded phage abortive infection mechanism. Deletion within abiLii abolished the phage resistance. The family includes some proteins annotated as CRISPR Csm2 proteins.	2.64089e-19

>NZ_CP040503.1|WP_009198476.1|980487_983559_-|FAD-binding-oxidoreductase
MDSVIDTAGLLDRLQRTVAGGADAGARRRAEYSTDASNYRIPPLVVAFPKDADDVAAALAAAREFGVPITGRGGGTSCAGNSIGGGIVLDFSRHMNAILDIDPEARVARVQPGVVMSELQKAAAPFGLRFGPDPSTQNRATFGGMIGNNACGPHAVAFGRTADNVAGMDVTLADGRRMKAGEGGLGYEAVPELARLVDENLATIRVQFGRFKRQVSGYSLEHLLPENGRNLAKFLVGSEGTLGLLTAAEVRLVPVEASPALVVLGYPDMASAADDVPALLAHRPLAVEGMDARLVDVVRRAKGGVPPLPKGGGWLMVEVGEEGGADAMSRARALAGSASSTAVDIRPAGPEAARLWQIRADGAGLGGRTPAGNQAWPGWEDSAVPPERLGEYLRALEALMKGYGLDGLMYGHFGDGCVHVRIDFPLESRRGTETFRRFMEEAADLAAGFGGSLSGEHGDGRARSELLERMYGPDVVALFERVKGVFDPECLLNPGVLVRPDRIDEHLRRPGAKPIPYAGGFRFADDGGDMARAVHRCTGVGNCRASRFDLGAFMCPSYEATRDEKDVTRGRARVLQDVARGGVLAWDSPEVLDSLDLCLACKACSRDCPTGIDVARYRSEALYRAYRGKLRPVVHYALGRLPLWARMVTKVPVVARIANAVMRLGPLRRLAFRLVGVDPRRAMPGFETRRFSRSEEARSVRKEARSLRAAFRKSWKKGLRGIPDESGIPDEKRGSAPERGKALARTSGLAGEATVGESTAGESDAKPRYVALWADSFSETLDARGARAAVSVLQEAGYTVLLPPDETCCGLTWITTGQLDAAKRKLDSLLGALAPFAANGIPIVGVEPSCTAVLRSDMEDLLAGDPRVDLVKEMTFTLAELLSAPKPFGPGENWSMPDLTGLEVVAQPHCHHYSVMGWAADEALLLSAGAELTKVTGCCGLAGNFGMEKGHYDVSVRIAGARLLPTLERANPDAVFLADGFSCRTQAEQLSASRGIHLAELIRDGIAVRRHMSDEGRIPARSR
>NZ_CP040503.1|WP_009198477.1|979007_980441_-|DUF4357-domain-containing-protein
MVLYALANGRIAPAQAVRPRGSIAAEVLGAIRESILEVVDVPLLPVMWEESDAAGKHGQSLVAIDQDGTVVMVNLRQRLTSVDLYEVVSRSGRYAHTGPVDMAQVYSKGAKEFGPDWEEFRSGRPPLGGVSPRLIVIALDIDEDVLPVFSTLSERVQLLSASIFDTNGVRQVSIEACRKRGSGPSADETVEFLPAPDVESGEETKPRRRGRAREAQEFQPTLTIPATPRFTAFPGHIDSQDDADVTDPAQTLIVEAVEAPLAEQPQPVDAEAGDRPTGRRSRRSAHREQGQGAAREDEKPDQQQDQQADQSAQEDPFNQMKIPVIPAWRVTEDGADETPTYISARYDQEVKRPRTEQLLWEKSAPKRDGKRRQPQTFSETTAANASSDAVARAAERELLTPAGRLVAIASRSVTPLTLEIWKNGSPTMATLTSTGTLLLGHTSYQDPSKAAAEVLGRNDVNGWQLWKTREGRLLGEL
>NZ_CP040503.1|WP_040322593.1|977649_978003_-|hypothetical-protein
MSDIYIVDAEYYMLASGAGELVQNPGTGDVETPVREAARGIPGASSVSASERAGEAIDSRCRSLMADIGQFKSDVEEAIKSMAGTDQESAAAMDRILEHVKGYPKAKPGSKGKARIV
>NZ_CP040503.1|WP_009198479.1|975940_977650_-|hypothetical-protein
MTSWRDAIEWRQDRLKVQLEPLRARRKQLIEAYEKLQSMEMTVTSRGLTADAILYALQQFEARISYLINDVSETMMVMAQMADGVWTVQTLILECKQKAKTHGLEIRDGRLMSDSGQSEDEFASAAAELKPMIKGVLENADSIDEAYYTRLTAVADGSYKSSEEGFSTSPGLPDLPQKGWTMGESAAWWSGLTDSEKESMVREHPELIGNRDGIPMEWRDKANRARLPQEIAEMKSNVAEAKSRMDKAESTVGKDSLEYLNATNDYNRYRKKLGDLEGLQKILEKNDSDVASNPSKTRQSLIYLDTKSSSRVQAGVALGDVDRAKTVQMVVPGMNNTVGDNMDGLINDAQKVRNTTFEESRNHSSSAGIHDKGDIATVAWMYRTPQNAEVATTDLAEKAAPKMDRFMEGVQTSRQAMGVPKAEINVGAHSYGSTMAGIAVGKVREGTVHNIALYGSPGSGVQDVREYNIDGQTYVSSVNTNDYVQGIGPDGSFGKDPMEMRGFKHLANNPENDSQCKYIPTGAGSGVTKFCSKGDDNPFGRHSEYLKTGTGSLKDISRIMGGMEPEGEK
>NZ_CP040503.1|WP_009198480.1|975326_975944_-|DUF4853-domain-containing-protein
MRAARTRRWFVLALILGLTAGCAEDMSKPGAGELLGQGSKDYWDRQTIEDYQRKTIPAIEEFMRRLLADGGGQHYAAEGANELTLCETKTDGREYMSAVYETQVSVPPTKIRAIAKETIEKAGLKIEQQDDERDNATGFGWSDSKNGGFLMLSAHPTKGISFHFVSGCRPSATKIDDPPPLKGVPTVPFTPQQETPSPSAASPSS
>NZ_CP040503.1|WP_009198481.1|974864_975053_-|hypothetical-protein
MSDLSFDRDRAGITAKGHWTDSDTFISIGFGYAELEGECDVVKDPVLEDSEHLFRACLHFVN
>NZ_CP040503.1|WP_009198483.1|972823_974716_-|hypothetical-protein
MTWSDVPGEEALPNLKDSGEGILQLGKGIANAGAAMQDTQVIAVGGEVEGWTGLAATAHQGQATFLQKAIQKAIDLHPKIPALLDKYVQEHAKTRSAITGLQHDWDEARTVHLRRIAELAIQLKAGLYPGDDDEYEKDRAKADEACEKTQKEVKAKYEAAVRSLNELAKSTGDSIFGLAESFAPKLRVAGEGNGSIDRNNLGVELFGGSGGVLAAQARWEDARADADKAAKVFLTKDGKLKGNISQKDLDSFNAAYGERMAKDPFFANAFAWRFGANNAIKLVSQLDGSHGAFPQETVQATRTSIGSAIILGTGGIRKGLSEEESSVWNAWNSGAKYLTSSDGTLIDESRDKYLDDLKKAGNKRWIGGANLDNAGASGYMLISGTIANSAQTHSELALGDPFLNGPHAIGRDIVKWDYENPQEANNYHSDIYTPKTTTWDPVHNMLVAMDGNPDAARTFLASDGPYEIAESGDGKQPVKYPISMTRYLVGNRHFVPLSGTTEALYVDRGKTLANLLDEVSSDKTHKESSLVARDYLQGYTDGLKRSDATFKGQDAFGYGNVELREKAGDILKEYSKDLASELKGYTGVPGAPHGNRQNGEYSLSLTKAGTTALFEGKSDFSRTSELVNPQ
>NZ_CP040503.1|WP_138587100.1|972215_972827_-|hypothetical-protein
MKTLTESLEANLEADLKDIYGRAATVSHADSANIRQDIKETCDKYQSMFSAIKGGSLASDAAQAGELDRKEATTANAMSVLVQKVGHIPVIGEVISTGYALQPSVEFNDHVKNVYQEHNADNANTSADVSTISRRMLSHVIVNNVSGWQNELNTFNNGIDDEDSRFMDRNGNWLIKIDPNTGKFEGDRLRVQQYNRFLLSWRP
>NZ_CP040503.1|WP_009198485.1|971095_971983_-|hypothetical-protein
MSVDHVGDVTSLKRDTDNLCFLGRKGDVRCLGPNDMGQISPNFDISYFHQPTTIALPGPASSIAVGRRHGCAIVDGSVHCWGNDAYGQASGVGREPELHVHYRYGLKAAVRVNLPEGIKQVHASNETTCARGDSGSVYCWGKNRFGEVGVPDGIDVESGQSVAKVPLPQPAVKLLDERGGKTCALLADASIHCWGSFQGSRKPIPTGPVALKVSTRLQEISGQMGMASDGKLVFIDFRPFDPRDGFIKTRLTPIDTFGKVKSYSGSYRSLQCWVLVSGAAYCRDERGRTTQIGQY
>NZ_CP040503.1|WP_138587099.1|970365_970758_-|hypothetical-protein
MKIFKPHASGGQYGGSVFLVKRFLGVFGLVVCVVAALTGSVSPEGDRLNTYRSDFASVSVGKYQLCLKTKDREAYCFSPLLVKGNRWNSGEPISLAPSGKDAKKVFYTGDHFCVIDTDDDLKCTGLNDRR
>NZ_CP040503.1|WP_009198475.1|983738_984158_-|hypothetical-protein
MRLRALRKSARSDVGQASDAGGLARRASAPKGSGASVSEESRSRVSLESGGGAGGALEGPRGAVTQRILEQIRMGRTVRAISAATGVSEVFVSTLLEHYDRLGMLDDAGSLCSSGLGACHTKDVSDEVRVACAGCPLVI
>NZ_CP040503.1|WP_009198474.1|984154_986272_-|ferrous-iron-transport-protein-B
MSCPRCGSEGHSHATATLSIDPSTEPTIALVGNPNVGKSTLFNQLTGARQRVVNAPGTTVQVASGNWHKAKIKVLDLPGTYSLIATSPDEQVVSDTIACAPGTITDREKTRGIDLVLVLLDGSSLTRSLYLLGQVGQTGQPVAAVVTMTDVAVENGDVIDYDALSRTLGIPILPMDPRSSKDYERLEEMVTEAIRTRPHIRGIDPDPGAPGYIGHVGCDCCEPKPKSTSKKKKKAAVSRMHAEELGRADTLFSWVDSVEKSFHESRAEPERLSRSDKLDRLLLNPLVGLAIFFSLMWLLFKTAGEWVSPLQDRFEDFFSKTDPGAISVANGVVWLLKKVGLNDTWFQQLTVGGIVNGLGVVASFFPLMFVIYAAFSVLEDSGYMARAAFLGDRLMRKIGLDGRVILPLIMGFGCNLPSLAAVRTLPSARQRLVTVLITPYTSCAARVTIYLMIARIFFRGHVATIVFSMYLLSAVLIVLAAWVLKFFITKDEKAAPLMLVLPAYQIPRLLIMLKMTFRRSWAFVTGAGKIIVAMTAVVWLMGAIPVGAGDKGFADPELAMEDSLYGKTAQVLVPAFKPTGFGEWHMTGALMTGFVAKETVISSVVTSYNLDPDADAGDAEDDGSDLGKLPKLVSQSLTESAGSGYQGLAAFAFLVFVLAYTPCLATVAEQAKLIGAKKATAAVGVQLAVAWLLAVGIFQIGKLFL
>NZ_CP040503.1|WP_082902951.1|986268_986493_-|ferrous-iron-transport-protein-A
MNLRECPQHKALRLTHVNLPRRNLLRMQELGVRPGTEVVVTQHAGFGGVVLNIGGARVAVDHRSALRIRAEVVS
>NZ_CP040503.1|WP_009198472.1|986882_989603_-|pyruvate,-phosphate-dikinase
MTKYVYAFTEGDRDMKDLLGGKGANLAEMVKLGLPVPPGFTITTDACRAYLAAGESPETLDVEVTSHLRNVEQEMGKRLGDKNDPLLVSVRSGAKFSMPGMMETVLNIGLNDESVQGLAAQSGNERFAWDSYRRLIQMFGKTVQDIDGDKFADILHKLQADKGYSGDLDMTADDLKHLVKEFKKVVKDETGEDFPQDPRKQLDLAVEAVFRSWNTERARLYRRRERIPNELGTAVNVCTMVFGNMGETSGTGVCFTRDPSTGHSGVYGDYLVNAQGEDVVAGIRNTLSLADLERLDKKSYDELRAIMNKLETHYRDLCDIEFTIQQGKLWMLQTRVGKRTPAAAFRVATQLVDERLITSDEAVTRVTGDQLTSLLFPQFDKNAEKKVLTKGMPASPGAAVGEIVLNNEQAASRVAAGASVILVRRETNPDDLAGMVAASGVLTARGGKTSHAAVVARGMGRCCVVGAEDLAVDEEAGTVHVKSRGVTLKAGDVVAIDGTTGEVFQGEVPVVDSPVMTYITHGLDAALSTGLDADTEELVRAVDRILTQADEKRNLAVRANADTPEDAERARSFGAQGVGLCRTEHMFLGDRRKLIESVILADTAEEQEEAFDALRPLQKGDFVGIFTAMDGLPVTVRLIDPPLHEFLPDLTELSVELAVKAARGEEVTEHEKRVLEAVKANHEQNPMLGLRGVRLGLKIRGLFKLQIRAIAEAAVECKKKGLDPRPEIMVPLIGSERELQIVRDDAERIIGKVEKENGVELDIPIGNMIELPRAALEADHIAVESDFFSFGTNDLTQTTWGFSRDDVEASFFNEYFDYGIFGISPFETIDASGVGQLVETGVTRGRAAKPGLKCGVCGEHGGDPASIHLFDKLGLNYVSCSPFRVPVARLESGRAAISNESAGTGR
>NZ_CP040503.1|WP_009198471.1|989899_990298_-|hypothetical-protein
MTVAIVLLSLTVSVVFGWAAVEGVMRLAKVRGGAGPRPSSGGHRATVLRERPAQPRVLRGGAWIGALERLAITGAILARQPEMVAAVVAVKGLGRWADLQTNPALTERFIIGTLASYVAAGACGYVGLALMG
>NZ_CP040503.1|WP_009198470.1|990294_991233_-|hypothetical-protein
MFAVTIDQRSSRSVGDRVPELLELLEEACAGNPPIAGFDRTVGDEVEGLFDDAAGVVAAVRAALAMGDWHIGLGIGSVESVGRNVREARGSAFVAAREAVERAKVSGEVEVRQGADVNISPLALEASQVVFQLLGALLADRTDAQREVSDLFDAGLTGREAAAALGVSPSAVSQRRTASRYDLETRGWAVLNELLGRIGDEVDARLDVEQKAKTKGESLARLGAERGVAKDGRAVARGNESSDVGALERSTAGKSLAAREQGPAGGAVPAAGKEVLAHATPAAREQAPAARTASAVPEKASASRKKQGDSRL
>NZ_CP040503.1|WP_009198469.1|991713_992157_+|YjdF-family-protein
MSAQFTLFFDGHLWVGVYEVDDGESARAARVVFGKEPSAAELHEFVREHGAELVRRAHGAVPVVEKGADAGEAGGGAGKTNPKRAQRMAAKAMRESGVSTKAQEALKADMESRGEERASARRSERKRAADEAYARRRAKARQRHRGR
>NZ_CP040503.1|WP_009198468.1|992330_993824_-|amidohydrolase-family-protein
MTEQPADHSASAPRTPTLPRTPSAQQTVRWTTPPTDGGERLDGRSVALVSADRVLTGKRGQAGGSLEVLGGADDAGARAAGRGGAILVRGREILAAGTAAELEGRLSELVPDVEPRKVVRLDLPGATLMPGLIETHDHLPTSGTDVEYPDYGPHEVARLTLNAARAARELLSEGVTSVQSLGARHYVDVALRDAVDAGDLRGPRIVASGPQITTTGGHAHHAGGAADSVDEIRRQVRRHHLMGVDTIKAMATGGFTTGGSAPWFAQFTVEELRVMFDEAHRLGKWTAAHAHGVQGIERAVRAGVDYVAHASFVSAAGRTEFDPRLADEMANAGVYVDCTIVAGLPGFIASDPSYAPPARLLWEHGVRIVAGHDAGIPGSPQRAYVGGLQALEEVGLPRNEVLLAATSRAAAGIGRAGVAGVLAAGFEADFIAVAGDPRQDLSVLHNLRLVAARGREFRPDRVEGLPAREVPAKPIGPAVTLAEWRERSVRLARHPEV
>NZ_CP040503.1|WP_040322589.1|994239_995568_+|ATP-binding-protein
MLLDFSISNYKCFAKEAHLSFVRPSLKTQVPRDGQSWTDVAYQVAAVYGANASGKSTLLEALTRFSSSIAGSDVRLFQPHASRLAANEPTVYSANFTQDGVRYTYAVEAHPWGISRESLHSYPRGTRKHVFTRSQEKGGELVVKAAADLRGPTAEVRKVTTSHDLFLASSHRYQHKTLAAVARGLRLDSAARIVSHDESDRSTRIRWIMTQMAKSEEWQSITNEAARMADLGIKRIELREKDIPPEILDHVRALFLTLKDEEDEDVELPDELLASLRRSLVFIHSGRDGGEFELGLEAQSDGTITWLASLIPAIDALRSGRLLIVDELDASLHPGLARALVELFKSPTYNQSGAQILFSTHDVSLLGNSPVRLLEPGEIWFCEKDPDGGSELVSLLDYDNREGNNNQRRYLAGKFGAIPNVDLSRLLKRSLGRAPTVSRKSA
>NZ_CP040503.1|WP_083786122.1|995572_996187_+|RloB-domain-containing-protein
MARGMRRSTQSRSQRRSFLIVTNGALTENSYLSALKSHMRKSKSLRKSVSMKIQPIEGDPMTLLRKVTAPKATNSGYDEIWIVVDHDGADRTEFLRCCAKKSTKKQKVIGVVSIPCFEVWLVAHYEQIRNYQNQIEAQRHYVQLAGLEQDKQKSLPEDFPWDGIDAACERSRLKGVKLPDVNAQGPCPSTTMPHLISALGLRNT

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Crispr_ID: NZ_CP040503_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040503_12

1234963-1235057

Orphan

Consensus_repeat	Method
TAGGCCGGTTCCGGCGCACTGTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040503_12

>merge|NZ_CP040503|12|1234963-1235057|CRISPRCasFinder
TAGGCCGGTTCCGGCGCACTGTAAGCGGACTGCCCATAGGCCGGTTCCGGCGCACTGTAAGCGGACTGCCCATAGGCCGGTTCCGGCGCACTGTA

>NZ_CP040503|12|11|1234963-1235057|CRISPRCasFinder
TAGGCCGGTTCCGGCGCACTGTA	AGCGGACTGCCCATAGGCCGGTTCCGGCGCACTGTAAGCGGACTGCCCA
TAGGCCGGTTCCGGCGCACTGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040503.1\|WP_009198218.1\|1233426_1234188_-\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|223704
NZ_CP040503.1\|WP_009198214.1\|1239483_1240464_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP040503.1\|WP_138587122.1\|1238180_1239467_-\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|376643
NZ_CP040503.1\|WP_009198213.1\|1240494_1246470_-\|fibronectin-type-III-domain-containing-protein	unknown	unknown	gnl\|CDD\|380078
NZ_CP040503.1\|WP_138587120.1\|1224382_1225558_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009198221.1\|1229831_1231412_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP040503.1\|WP_009198209.1\|1248510_1249758_-\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NZ_CP040503.1\|WP_009198216.1\|1235757_1238181_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376628
NZ_CP040503.1\|WP_009198205.1\|1252768_1253686_-\|DUF4261-domain-containing-protein	unknown	unknown	gnl\|CDD\|379456
NZ_CP040503.1\|WP_138587119.1\|1221612_1222518_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009198223.1\|1226975_1228439_-\|alanine:cation-symporter-family-protein	unknown	unknown	gnl\|CDD\|376500
NZ_CP040503.1\|WP_009198226.1\|1223400_1224024_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP040503.1\|WP_083786110.1\|1250701_1252318_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|367155
NZ_CP040503.1\|WP_009198227.1\|1222727_1223339_-\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|319790
NZ_CP040503.1\|WP_138587121.1\|1231411_1233424_-\|FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|366133
NZ_CP040503.1\|WP_040323033.1\|1228912_1229656_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009198210.1\|1247059_1248481_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009198203.1\|1254208_1254760_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|225804
NZ_CP040503.1\|WP_040322530.1\|1225562_1226648_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_083786171.1\|1249754_1250699_-\|queuosine-precursor-transporter	unknown	unknown	gnl\|CDD\|376842

Protein	Function_ID	Function_description	E-value
NZ_CP040503.1\|WP_009198218.1\|1233426_1234188_-\|serine/threonine-protein-phosphatase	gnl\|CDD\|223704	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms].	4.27562e-47
NZ_CP040503.1\|WP_009198214.1\|1239483_1240464_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	2.55463e-95
NZ_CP040503.1\|WP_009198216.1\|1235757_1238181_-\|hypothetical-protein	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	7.39687e-23
NZ_CP040503.1\|WP_009198213.1\|1240494_1246470_-\|fibronectin-type-III-domain-containing-protein	gnl\|CDD\|380078	pfam17963, Big_9, Bacterial Ig domain. This entry represents a wide variety of bacterial Ig domains.	6.89191e-06
NZ_CP040503.1\|WP_083786171.1\|1249754_1250699_-\|queuosine-precursor-transporter	gnl\|CDD\|376842	pfam02592, Vut_1, Putative vitamin uptake transporter.	2.04652e-59
NZ_CP040503.1\|WP_009198221.1\|1229831_1231412_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.21694e-78
NZ_CP040503.1\|WP_009198209.1\|1248510_1249758_-\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	1.49652e-170
NZ_CP040503.1\|WP_138587122.1\|1238180_1239467_-\|DUF58-domain-containing-protein	gnl\|CDD\|376643	pfam01882, DUF58, Protein of unknown function DUF58. This family of prokaryotic proteins have no known function. Caldicellulosiruptor saccharolyticus PepX, a protein of unknown function in the family, has been misannotated as alpha-dextrin 6-glucanohydrolase.	1.12617e-19
NZ_CP040503.1\|WP_009198205.1\|1252768_1253686_-\|DUF4261-domain-containing-protein	gnl\|CDD\|379456	pfam14080, DUF4261, Domain of unknown function (DUF4261). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 80 amino acids in length.	3.21501e-11
NZ_CP040503.1\|WP_009198223.1\|1226975_1228439_-\|alanine:cation-symporter-family-protein	gnl\|CDD\|376500	pfam01235, Na_Ala_symp, Sodium:alanine symporter family.	8.11109e-177
NZ_CP040503.1\|WP_009198226.1\|1223400_1224024_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.83608e-07
NZ_CP040503.1\|WP_083786110.1\|1250701_1252318_-\|HNH-endonuclease	gnl\|CDD\|367155	pfam02720, DUF222, Domain of unknown function (DUF222). This family is often found associated to the N-terminus of the HNH endonuclease domain pfam01844. The function of this domain is uncertain. This family has been called the 13E12 repeat family.	3.44315e-18
NZ_CP040503.1\|WP_009198227.1\|1222727_1223339_-\|HAD-IA-family-hydrolase	gnl\|CDD\|319790	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive. This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.22942e-31
NZ_CP040503.1\|WP_138587121.1\|1231411_1233424_-\|FHA-domain-containing-protein	gnl\|CDD\|366133	pfam00498, FHA, FHA domain. The FHA (Forkhead-associated) domain is a phosphopeptide binding motif.	9.73726e-13
NZ_CP040503.1\|WP_009198203.1\|1254208_1254760_-\|AAA-family-ATPase	gnl\|CDD\|225804	COG3265, GntK, Gluconate kinase [Carbohydrate transport and metabolism].	1.17715e-67

>NZ_CP040503.1|WP_009198218.1|1233426_1234188_-|serine/threonine-protein-phosphatase
MRELNEDSLFASSPVFVVADGMGGHSAGEVASRTAVDAFASLDGRDFVSAGELEERIALAARTVRGLASETGIPGTTLTGLVLGIEGGFPYARVFNIGDSRTYHLSGMAFIQVTKDHSEVQELIDAGVADGNNWGRRNVITRALGGHSGSDVGADVFLVPLSMGDRFVLCSDGLSSVVSNERISEVARYMEDPQETAQTLVQKALGAGGSDNVTVVVVDIVDCGPQLPSGNIEEETVTAARRIVGDDTVPRRG
>NZ_CP040503.1|WP_138587121.1|1231411_1233424_-|FHA-domain-containing-protein
MYITRAQAKSGDVLAVVAPHGAMMVQGATPSQAEWLWEAIRSGSTFQQLVEALGFGVRPSRQIPAFAIAVSEGEHLRVALRGAFRACDRDGNVLGTGMETPTWNEAFIDRMADLVLDAGPGAGVGRPEGLPFADGIAATSALLLAFVPGHPEIRGAAADSRAKEAAAYGAAGSSPAPGGYGAADQGAEAAPAPQAVQEAADVSKEPAEAEAKEEGPLPANPIDALEKTRMPLDEPTLDAVNGADDVASAGSPEKADEPSAEAPFFIDSVPGDFHTPQAEEEKTEWQDAAPVEAEAPAPVEAEGPAAQTPAAEDGATEEEEAIPAEELEEIAANLSSAGEVGDQAPEEDVPEEQPRFPIESRFPMADQLDESEDAAQAAFSPVQAAEGPEQEPTDAAEESAEPAEEPARRTPRPWEVADEAPSAEEPTAPEPAGDAVEAAEEPEAPVEGPAGWDGQPREEAPRDDEGAQGARPEPSFPSVAADAAAAGASAEDYDAETVVGEQSAQEQERVQAESPQAMVLAVLCQNGHLNPPHGKVCRICSGPLGGEPNWYPRPSLGEIWVSTGLNVPLDADIIIGRKPASAPEPGRPRAHLVPVPSPDQQISRTHCEIRVDNWDVRLVDRNSNNGTYVLRPNERPIRISPTEPFFLRVSDVIDIGEGVTIQMLGPRSGV
>NZ_CP040503.1|WP_009198221.1|1229831_1231412_-|serine/threonine-protein-kinase
MSAGRRPATPPKIPNARYLSYLGSGGFADVYLYDQQVPHREVAIKVLRRGVTEQQKLAFRAEANLMARMSSHPSVVSVHGAGETEDGRMYLIMEYCPPPHLGKLLRMRPLPVTFALEVGIQIAGAVETLHRAGIVHRDIKPSNILMTPYQHPVLTDFGIATRMGDTTQAEGFSVPWAPPEQATGEGEAAPAVDVYSLAATIYTLVAGRAPFEIVDGDNSEIAVINRVLRSPLPKTGRTDAPDELERVLATAMAKDPKQRYQSVREFATALQFIQAEQLHQRPTDMNVQGEGEEWQESSTVDEDATRQAVRTISPIDDENTRDVPRRVGRHSIEVDRGAGVVFAVDSADVASAGRRHSYYGAPIGDDELEDAPPPEASGAKRTFAAFLRKPVARFSIAAVVVLIVTLSVVYFMNRGKGETIKPSPSASETTKMDPGAEQPQGVTKLKGTVSNGRVTFTWENPDPHDGDMYLYKAPFVAGEGKVEATEKTSVTVAARPVETCITVQVRRVGVSNESKAVSACVVTSGQ
>NZ_CP040503.1|WP_040323033.1|1228912_1229656_-|hypothetical-protein
MALEIEFCGEVYKIDPGDTFTIGRVGTLAIEDNPFLHRNFLVIESHNGLWWVSNVGSRIAVTVAETTGMLQSWIGPGSQIPLVVPNMSLVFTAGPTTYEIDMTVPDTMYEVSSTGREDVGETTMGQVTLTPSQRLLILALAENWLRRVGTGPSDIPRSEEAAQRLGWTQTRFNRKLDNVCEKLDRLGVRGLRGGKGVHATYRRARLVEYAVASQLVTADDLTLLDEEFQTNQRQKAAEGSRRSRRRG
>NZ_CP040503.1|WP_009198223.1|1226975_1228439_-|alanine:cation-symporter-family-protein
MDKLTELISTTNNWITTHILVVMLIGAGIYFTIRTGFVQIRLFGQMVKQVFDSRDVDGDGISSFQAFAIGIASRVGTGNIAGVAIAVTLGGPGAVFWMWLVAFLGMATAFIEATLAQLFKIRWHDGTFRGGPAFYIQRGLGSRKWGVVFALFLICSFGVSFEMVQANTIADTLKTQFEVNPWVTAAILLVLCGPIVYRGLKAVAKASEIVAPLMAIVYIGLAAAVVVMNLDKVGPTFSLIVENAFGLRETLGGLAGSMTAAMMNGVRRGLFSNEAGEGSAPNAASTAHVTHPAKQGLIQSAGVFVDTILVCSATAFILFNADPEALKPYWTSPDPAGADMTIAALKSTLGAWAGPVMVVLICVFAGSSVIGNFAYAEVNMDFLTKGKAWGDKLLKAIVIVSIVLGSVAELKLVWNFADLTMTGMALINIVSIVMLGKWAFGALQDYLRNRERPFVATGNPSMPGELPTDIWVHGGTDSPSGSPATVH
>NZ_CP040503.1|WP_040322530.1|1225562_1226648_-|hypothetical-protein
MRGLRIFFAVVVLIALPACSLSTSAGPTPSSTSPHSTKGNGPTVGTDPKATLGEAEIQGSEFRLFTGKVWVGFTAPNGYAVSRAKQEDVKLVGLTSSSDSKTNLMFSHLSSATSLPSADSVAATLRTKQFTNIEARYDIQNLGDFKAVAAQATIQTGYVAIVVVADFEGYLWSATINAPDAATADELLKTVRALKPVNAGSRTSPSTAASRHVDPLKASVSGRTYTVDVNGAKIVMRMPDGFVPSKPSAEGLLGFEDQQNSGRNVSFYIDRKGFTTDPTQILAKMRENGGMKDIEHMKTVPEVQKVAGYPAGAILVKSTNGTISRIYIVNVNGVMIQLVVNSGKAETEIPALLQVVEDATS
>NZ_CP040503.1|WP_138587120.1|1224382_1225558_-|hypothetical-protein
MIVVFAAAMCLTACASEPKKEMSFGMSAAPTRTASPTPSPTPVPTATATKKAQSQGQGLPLGSASVTNGVLTVGTGSGRVTMNVGPSMRVFERTYAETGVAGVESSSNPNVKLSLFPTETAVSNTTAEQLTKIVQSRGSTSVRPVQTASLGNVKAVAVDAKTRVGHLSRVYLLRIEDGVWNLTVVAPTQKELNALLKAAETFNFAGPQGSGGSDMVAGVGGDGRSDSQSGGDPQEEKLSVLSRDGKLRGGVKGGQYNLQTPSGVISFPMPSKMTLTERDEDDEDAIGIEANGASLLFEVGDEEEYHSGEDLADEWASKEDDDASGEYLGQTTIAGLPAVAARHITESGDFRYLYVVEFNGTYLNVMVEGEKRSAATVNMLLNTVRHAKAGR
>NZ_CP040503.1|WP_009198226.1|1223400_1224024_-|TetR-family-transcriptional-regulator
MAVPKISAPTVRQHREIVKTKLVDAAERLLRESGPDALSAAAVAAEVGIARNSIYRYVDSVDDLRLLTLARYIPRWREAIFSQIDAEAPPVVRLRQFAVASLRQSNESSHGWLMSLMHARGRPARSDGASGERAAVAEDVADIHAMADDFLREQWEELGVENPRMWTGFTRMLLLEAFAQVEAGEDLTDVAGALGESVAALGQAAEK
>NZ_CP040503.1|WP_009198227.1|1222727_1223339_-|HAD-IA-family-hydrolase
MHALLFDLFGLFISEQSRTSFETLARTVGVEPDVLLPAYRGKNRVEYDAGAIGSREYWARISAETGVDIDWQAALAADLAALGVKDEAMVSFARGLNRSGLTMGMLSNIPCDFVGWTRWHNPWIDELFDPVLFSCRLRLAKPDEEVFAVALARLSQSAGRKLAPEDVLFVDDSPKNVEAAKKLGFLGHCFENLEALSAKIESI
>NZ_CP040503.1|WP_138587119.1|1221612_1222518_-|hypothetical-protein
MGSASFAEGGAPTLRVTLTPNARTVETGDNVVYTVEFSCASTDANCDGAVLTVDVPRFANPDGAVNSEVAPVLAAATNTTGVVAPPTIAPEASFAASSATQASAKASTTVDGSADLSILKSGHIVPPVKGVEVTYTLRASYAAAMDATGKYTGVPAVGHVNADDVVVYDVLPHLGDRGVGPAASNARGSQWQPRLAGPVAVADSDVPWDKVKIQYSTSENACRGEATAQGAARAAGPAGCVDDWTDSPASFGDVRAVRAEFANRATRSGPMTRRPACGPSSPTDRPRVRCPLEPLRPSSSA
>NZ_CP040503.1|WP_009198216.1|1235757_1238181_-|hypothetical-protein
MPANRLRYMDLGVLVVMLVAASMTWGPVFGDLSGYVAAVGGIAVGVAVAWAGYAARLTPWLTAVFGVACYLLFGGAIALRPVAAAGWLPNSEVLQMLMVQTIKGWKDLLTLTPPAAAFVGPTVLPYLACLVAALICGSLALRASRPEWGVIPVGLVVILGILFGSRQAPLARWIGVTVGLIGLVWCSRVIERRRVVAVSAAEAGEKASRRRRNGAFALAGAGAVAALVFAPALTDSQARYAVRDHVVPPLNVREYPSPLSDFRSYNDQHASETLFSVSGLKKDERVRLATLDVYDGIVYNVSTDPKKGFRRIGPDVSLENPPAKSRPSKLSISVGKYSGVWVPGGGLLTHLKFAGDRAKKLQDDLYYSPSEQTALTVTPLRDGDSYRIVDLVRPAPSDRQLEGHAFGAVPMEENTNVPNAVAAKTQKILKGTMSPIQQARAIEQHLKNNGFYAGGEQSPSRPGHRNQRIQAFLEAEYMQGDDEQYAVAMALMARSAGMPARVVMGFYPDSHRDGTINIKGRDAHVWVEINFDGYGWVMFDPTPPRDKKLQTQEPKPKPNPRPIVIQPPDPLDQPVELTPTNQNDDDRKKDEDAGVSRWLFYIATGLGITLLIVGPFVAVLAAKALRTRRRRTKGRPDERAAGAWEDVLDVARDGRVSIDARMTRSEQASAVTDAVAKALSGKKAPAGKKAPAGKAEVDSAPIVETARRADASVFGSGDIGDTSLTATWRSAEEAKSVIRRASTRRSRFSLKSFGARRKSKPPRAGGGRRWKQAKTFKASGPHEQGERGSAGSVYPPKRPNEKEGTHE
>NZ_CP040503.1|WP_138587122.1|1238180_1239467_-|DUF58-domain-containing-protein
MKESGARRPLRAGASRLRRAAASAADALRRLGERASGLPGVRRAIPVLRVVTGFGWAVLVLAILAWHYGRQRHWMELVCLAVLLGVAWIVAVAWTIGKVSYKVDLTLASSRVVSGETAVGELTVANTAARPCPSSVVEVPVGATVAQFGVPILSGDRAFNEIFTIPTHRRGVIPVGPVRSVRGDGLGLLRREQVWVERQDLYVHPKTVNVGSSSIGFIRDIEGAATHDLSSNDVAFHALRDYIPGDDRRNVHWKTTARIGKLMVRQFEETRRAHLLIVFDDDARSWASESEYELGVSVAASIGAAVLRERRELSFVSQLGPLPTSSPRPFLDGLTLLDARPGVVRLRDLARVAMDKTPNASVIALVTGSLVDVAEIHSGYAILPVNARTFALRADELGKTARSLIAGLPLVTVPRLDDLPLALRKAVT
>NZ_CP040503.1|WP_009198214.1|1239483_1240464_-|MoxR-family-ATPase
MTQQQEQVTEQNAAWFAETFGRIVSNVGRALLGKDDVIRLALTTMFAGGHLLLEDAPGTGKTALARSIAATVQGTHSRIQFTPDLLPSDITGVTIYDQKTGEWNFHKGPIFASIVLADEINRASPKTQSALLEVMEESRVTVDGVAHETGRPFMVIATQNPVEQAGTYPLPEAQLDRFLVKTSVGYPQSAAGVEILKGAASPDRSKDLPPVISTSAVDEMSRRAANNFASEAVLGYVQNLVEATRASKDVRVGVSTRGAISMVRAARVCALSQGRNYVLPDDVKALAHVVWDHRLVLDPDAEFAGATREAVVERALEEVPAPTLRK
>NZ_CP040503.1|WP_009198213.1|1240494_1246470_-|fibronectin-type-III-domain-containing-protein
MSLPRSRDLTRDLTRDAPRPRRRGLSKRTQRLVSTGATAAILLAYGAAIAASQGIDRAELSLNDGGVWVTNQSSRTLGHVNYPSQSIDASDRTKTDKFDVLQEEDTVLYRNMEAGTLAAVDPAKSLIGTEQQLGTVDGVGLGGGTIGLIDSKAGKVWTTGFKSLPGFSPEAAEPTTEGVEDGTMAVGKDGSVHVVSAKEKVLRTMQAEGSAFTRIEHKFPDELASVKGLQISSVGDKPVVLDPDSGKLLLPDGKLVSLGDSNGLRLQEPGPNSSDALVASSTSLYRVSLDDGAVTQKAADPDNPNARGSAAPPVLHQGCAYAAWANTGRFVRDCDGNADDVSRPAEKLEASKSVRFRTNRKIIVLNDVANGNVWLPDKDMVLVNDWNNINQSEDVDDDKKEDSSDLNTQQQDPNRTDENHPPKAENDSFGVRPGRSTTLPVTFNDNDEDGDILTVKALSQPSFGTVRPGRNGQALQIDVPEGATGSTSFTYEADDGRGGKATATVNVSVHPFSQNAPPVQRINTSAKLSSGGTTTLQVLGDWIDPDGDQIYLKSAAGTKGLNASFRETGSVSISDLGQGAGVRNVNLVVSDGQADTNGSVVVEVTDGVNQPPRANGDLVRVVAGESTTVDPLANDTDANGDLLKLVSLGPSPQGLTAKASSDQSTVTVSASKPGTYYQTYFVSDGPTSSMGIIRVEAVERDANSTPIAENDIAMLPAGGQSLVDVLSNDSDPGGGVLTLQSVQTEPGSKLVVSPYNHEHARVSAPAGLDAPETFTYTVSNGSQTATGRVKVIPVPAADAQAPPVLADDQLVVRAGDVGSVRVLANDRSPGNLKMTVLPNLQSNAQKDQGEVFLSDNVVRFRAGKKPGSVKVVYTVQDSLGHTESATVNITVTAADAEKDSPPIPKNITARAVVGEKLNITVPLDGIDPEGDSVELVGPGESPKLGLAEVGGDSLKYTAGKPGTDSFQYIVRDTYGKTATARVRVGVVPAPKTNQPPNAVADQVRVRPGTKVSVPVTQNDSDPDSGDTPKLVAGSAKSRAKGLKVSERRNEVIVKTPKTAGSYPVSYRITDGRGGFAEGLLTVNVSPDAPALAPIARDDSVSRDKAFGKDKVRVDVLANDTDPDGDVYDEKVESDDEGVTVNSDKSLTIKTSDKARIVLYKVKDSTGMESAAVVRVPPARQTEPVVDTSKTIVAEAGKPKKIKINDYILTRSGRSVIMTDPSKVAASVGWNGDPLYTDERTITFTSQSDFSGPTMITLEVTDGKDRNDGSGLVRTLQLPVEVKPSGNRPPEFTPTPVQVEAGSTKPVSANLAAMTTDQDRGDDPKDFTYKVVKAPKGIDAKVSGSVLSVKADAESQPGSAGAVEVSIDDGHNSVKGQVPVTIVKTDRPLIQVASYEETVKAGTTAKVDVSKFAVNPFPDKPLSIAGQPTVSSKVGGVKASSSGTVVSVSIPHDVTGEIYVSYQLMDATGLPERSVRGQFKLSVLGKPSPVQILGARVTNKNSATVMWKVIDFNGSPVTDVVVRDVTQGDEKHCGAVTQCQLDGRTLGIDHVFEVTAYNAVGASTPTRSAPVLMDIVPNRPAGLTATPGDGSVTFSWNRVSSDGSPVTALTLNVAPGQSVQLAPGATSATVRVPNGTSVQATLVATNRQGQSEPSAPSAPVTPFGRPGAFSASVENTSVNKSGSDGRGQATVRWTSAPSNGRPIESYTVQASTGESVTVAGNKNSVVMDIGYSSQPVSFTVTAYNSKNPNSSTAASAGSVRILGSLSAPAGGRIEATGTSGEVSITNAPRGSATNGWRESELVYEYSTNGGGSWNRINGGGQIVRGLPNGQSVKLQFRARTVSENRTSLVSSSNAVVPYGRPTPPDAFSCGWEEPGDDDVVCTWSGGSHNGSSGEYTITGSGIKKSKSVDFSKNSVKIDDVGMRPVRYCIRVSQSSPQEIDSDERCNDLMPGERVGMYSVAWRSDPGGALGGRLPREALALPPEAVAFRTPRA
>NZ_CP040503.1|WP_009198210.1|1247059_1248481_+|hypothetical-protein
MGFIDWAFDVAAAHPDLTGALIDLDGEWLDILLPDGRTFRFRPGQMIDKSKPEPVRRKLLDRLISIGVARAESAPSESGPSASARFESDASDASVESDASAPEAGAAFDRSSGSEFFDEAPPEDEPSAVAAERLGPLDASSGESVLAHIMPIVRSADYFVASHDHARDDSMIYVPLTPFVGAGIAIDGRDLITPMYFSDAERLGLPTDIVGFFQQALMHLRTSDLTNGQPSVQVQPGTLAGAQIFEFAGPPSYQSSWFMDVEMALTVAESLSSVHDDGLALFVPASRDLAFVVMADDPHLAPLFQYLSRAAADAESIYPLPHVVTGDGWSEWIPMNDHPAARILSKIRARSRAAIYSVQEREMRTWPNDFGRLAPFEVIRDGALTSSATRWTSLDGFGSVPDAEYIDFVRQKSPHPWDAEASDRVRLRTQVARDVWHEGLSPMHNVWPPRWNVSGFPDDAQMAALKEASTREF
>NZ_CP040503.1|WP_009198209.1|1248510_1249758_-|tRNA-guanosine(34)-transglycosylase-Tgt
MTFEIRARLDAHPLARTGVLATPHGDIATPAFVPVGTKATVKAVAPEAIADVGAQAVLANAYHLYLQPGSDIVDEAGGLGKFMNWPGPTFTDSGGFQVLSLGSGFKKVLSEEFSGSPHADGTVAPWKERLADVDDDGVWFRSHLDGSRHRFTPEVSMRIQYELGADVIFAFDELTTLLNSRAYQEEALERTRRWALRCLAAHRALTAEREGKPYQQLFGVVQGAQYEDLRRKAARDLGAMEADGQRFDGFGIGGALEKENLGTIVGWVSQELPEDRARHLLGISEPDDFFAAVEAGADTFDCVNPSRVARNAAIYSPDGRFNLTRAQFRRDFNPLVPGCGCYTCTHYSRAYLHHLYKAKEMLFSTLATIHNEHFTVQLVDGIRAAIETGDYADFKEETLGRFYAGKWGRSAGEKQ
>NZ_CP040503.1|WP_083786171.1|1249754_1250699_-|queuosine-precursor-transporter
MGRERRLNARRSRVQASRRVRAALHSTRTTERFDVSVSNRPPWWQRGANPASRTEVPVLKEFSVSHRHVRRGYFDIVAVCFVAFLLLSNIAATKLIGVDIAVGGFSWHLVFDGGAILFPLTYILGDVLSEVYGFRRARRVIVTGFVVQILASLTFWLVQIAPADPDYKNQAAFEAVLGQVPRFVAASLLGYLAGQLLNSLVLVKIKKAFGEKRLWVRLLGSTVVGEAADTAVFCLIAWTGNAGWATIFNLMLVGFAYKVGVEAVFLPLTYAVIGFVKKTDPAYAESSAEEQASCGERVSCEEGVSKADGKEIAK
>NZ_CP040503.1|WP_083786110.1|1250701_1252318_-|HNH-endonuclease
MTLDDVDVAGVLCPAGVALSQGFAYAGGGGRVSDRGRKSGVGESVNGLKADISILAGLDVSKVSDEELLAGAEALAGLASRLGAVRGRWLVAIGERGSWRASGERTLVRWNEKASGQSPAAAAREIARAQSLGEELPVMAAALESGEVFAEHVDGVRRVFSTPALRESLRREGVQEEIVRWARRSAPREFERRLRARALREDPAMGVAAEKDEAAREKVVFSPSGWGMRVSGWLSSETSALVDTALSALMGRKGADDARTLPERRAGALVELASVRLDEGTLAAGARIRPHLSVHVPLATFIRLENAAGGCPALDANDSPEGSLSMFKSGVAATGSVDARGVGAVEAGGVNDGVNRDASRRCVETGGQGRAGACLEKVRRQRKKLGPLLAVIPSAIDLKALAGAEPAAFDDGTALSMTQLARLACDSSVGRIVFSATGEVLDAGRSKRLFTPGQTRAVIARDRTCRYPGCTETIPHGQIHHALPWKRGGATDLANAVLLCWHHHALVHREMTTIAHHDGGFVFTRPDGTIIGTRRHGV
>NZ_CP040503.1|WP_009198205.1|1252768_1253686_-|DUF4261-domain-containing-protein
MTEFPVSMIHPDAPEMLSATALFTAPIDLEAAAARVGTLWNESIASEWEEGGSILRFALRDVVVLLSPVPGEAVPERGRLPAHGFHVALTCFAPMQDVGGFGAGAGGFGPGADGLRRENGGSGGEFGDRAVEAGGSGIPGFTGEEIAELEGLPREIGLRRRALTAHVVLTEVADALMREKSAVGLFRPELGVVQPPRMTVELADLLSKGQAPIPLWVGIRVSKPDLVYGRTLGLPLFGHLDLEVVGSLHSEEEVYAMLSNVVDYLLSADAFLLPGQSIGYRDGKDLAVSQAVSPADRAAVLHIGF
>NZ_CP040503.1|WP_009198203.1|1254208_1254760_-|AAA-family-ATPase
MSESDIPHLPAPPRAKGPVNIVVMGVAGSGKTTIGMMLAGKLGYVYAEGDEFHTQANRDKQASGLPLDDADRQPWLEAIRDWMRAENAVGHSTVVSCSALKRKYRDTLRENGARTVFAHVAPPKDLNAERMEKRRGHFMNPSLLSNQYATLERLEDDELGFVVDNPGTPEEVFVETYTRLADL

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Crispr_ID: NZ_CP040503_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040503_13

1253754-1253833

Orphan

Consensus_repeat	Method
CGCCACTTCGACAAGCCGCCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040503_13

>merge|NZ_CP040503|13|1253754-1253833|CRISPRCasFinder
CGACACGTCGACAAGCCGCCACTTCGACAAGCCGCCGGCACTTCGACAGCCCGCCAACGACATTTCGACAGCCCGCCAAC

>NZ_CP040503|13|12|1253754-1253833|CRISPRCasFinder
CGACACGTCGACAAGCCGCCACT	TCGACAAGCCGCCGGCACTTCGACAGCCCGCCAA
CGACATTTCGACAGCCCGCCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040503.1\|WP_009198196.1\|1259604_1260210_+\|acyltransferase	unknown	unknown	gnl\|CDD\|153250
NZ_CP040503.1\|WP_009198209.1\|1248510_1249758_-\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NZ_CP040503.1\|WP_009198214.1\|1239483_1240464_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP040503.1\|WP_009198216.1\|1235757_1238181_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376628
NZ_CP040503.1\|WP_009198213.1\|1240494_1246470_-\|fibronectin-type-III-domain-containing-protein	unknown	unknown	gnl\|CDD\|380078
NZ_CP040503.1\|WP_083786171.1\|1249754_1250699_-\|queuosine-precursor-transporter	unknown	unknown	gnl\|CDD\|376842
NZ_CP040503.1\|WP_009198193.1\|1261622_1262213_+\|NAD(P)H-dehydrogenase	unknown	unknown	gnl\|CDD\|225158
NZ_CP040503.1\|WP_009198192.1\|1262216_1263203_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274646
NZ_CP040503.1\|WP_083786108.1\|1260641_1261409_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP040503.1\|WP_138587122.1\|1238180_1239467_-\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|376643
NZ_CP040503.1\|WP_009198205.1\|1252768_1253686_-\|DUF4261-domain-containing-protein	unknown	unknown	gnl\|CDD\|379456
NZ_CP040503.1\|WP_083786111.1\|1234232_1235837_-\|FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|238017
NZ_CP040503.1\|WP_040323027.1\|1255779_1256922_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340882
NZ_CP040503.1\|WP_083786110.1\|1250701_1252318_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|367155
NZ_CP040503.1\|WP_009198197.1\|1257918_1259172_+\|threonine-ammonia-lyase-IlvA	unknown	unknown	gnl\|CDD\|236318
NZ_CP040503.1\|WP_009198191.1\|1263255_1264014_-\|twin-arginine-translocase-subunit-TatC	unknown	unknown	gnl\|CDD\|376413
NZ_CP040503.1\|WP_009198210.1\|1247059_1248481_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009198202.1\|1254891_1255575_-\|adenylate-cyclase	unknown	unknown	gnl\|CDD\|143629
NZ_CP040503.1\|WP_009198198.1\|1257312_1257681_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378968
NZ_CP040503.1\|WP_009198203.1\|1254208_1254760_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|225804

Protein	Function_ID	Function_description	E-value
NZ_CP040503.1\|WP_009198196.1\|1259604_1260210_+\|acyltransferase	gnl\|CDD\|153250	cd07988, LPLAT_ABO13168-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.	1.31766e-60
NZ_CP040503.1\|WP_009198209.1\|1248510_1249758_-\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	1.49652e-170
NZ_CP040503.1\|WP_009198214.1\|1239483_1240464_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	2.55463e-95
NZ_CP040503.1\|WP_009198216.1\|1235757_1238181_-\|hypothetical-protein	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	7.39687e-23
NZ_CP040503.1\|WP_009198213.1\|1240494_1246470_-\|fibronectin-type-III-domain-containing-protein	gnl\|CDD\|380078	pfam17963, Big_9, Bacterial Ig domain. This entry represents a wide variety of bacterial Ig domains.	6.89191e-06
NZ_CP040503.1\|WP_083786171.1\|1249754_1250699_-\|queuosine-precursor-transporter	gnl\|CDD\|376842	pfam02592, Vut_1, Putative vitamin uptake transporter.	2.04652e-59
NZ_CP040503.1\|WP_009198193.1\|1261622_1262213_+\|NAD(P)H-dehydrogenase	gnl\|CDD\|225158	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only].	5.79461e-24
NZ_CP040503.1\|WP_009198192.1\|1262216_1263203_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	5.44668e-141
NZ_CP040503.1\|WP_083786108.1\|1260641_1261409_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.64301e-11
NZ_CP040503.1\|WP_138587122.1\|1238180_1239467_-\|DUF58-domain-containing-protein	gnl\|CDD\|376643	pfam01882, DUF58, Protein of unknown function DUF58. This family of prokaryotic proteins have no known function. Caldicellulosiruptor saccharolyticus PepX, a protein of unknown function in the family, has been misannotated as alpha-dextrin 6-glucanohydrolase.	1.12617e-19
NZ_CP040503.1\|WP_009198205.1\|1252768_1253686_-\|DUF4261-domain-containing-protein	gnl\|CDD\|379456	pfam14080, DUF4261, Domain of unknown function (DUF4261). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 80 amino acids in length.	3.21501e-11
NZ_CP040503.1\|WP_083786111.1\|1234232_1235837_-\|FHA-domain-containing-protein	gnl\|CDD\|238017	cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).	3.9793e-09
NZ_CP040503.1\|WP_040323027.1\|1255779_1256922_-\|MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.2489e-53
NZ_CP040503.1\|WP_083786110.1\|1250701_1252318_-\|HNH-endonuclease	gnl\|CDD\|367155	pfam02720, DUF222, Domain of unknown function (DUF222). This family is often found associated to the N-terminus of the HNH endonuclease domain pfam01844. The function of this domain is uncertain. This family has been called the 13E12 repeat family.	3.44315e-18
NZ_CP040503.1\|WP_009198197.1\|1257918_1259172_+\|threonine-ammonia-lyase-IlvA	gnl\|CDD\|236318	PRK08639, PRK08639, threonine dehydratase; Validated.	0
NZ_CP040503.1\|WP_009198191.1\|1263255_1264014_-\|twin-arginine-translocase-subunit-TatC	gnl\|CDD\|376413	pfam00902, TatC, Sec-independent protein translocase protein (TatC). The bacterial Tat system has a remarkable ability to transport folded proteins even enzyme complexes across the cytoplasmic membrane. It is structurally and mechanistically similar to the Delta pH-driven thylakoidal protein import pathway. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N- and C-termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N-terminus and the first cytoplasmic loop region of the Escherichia coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon.	5.15005e-53
NZ_CP040503.1\|WP_009198202.1\|1254891_1255575_-\|adenylate-cyclase	gnl\|CDD\|143629	cd07891, CYTH-like_CthTTM-like_1, CYTH-like Clostridium thermocellum TTM-like subgroup 1. This subgroup contains the triphosphate tunnel metalloenzyme (TTM) from Clostridium thermocellum (CthTTM) and similar proteins. These are found primarily in bacteria. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. These enzymes are members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily, which have a unique active site located within an eight-stranded beta barrel.	1.37701e-43
NZ_CP040503.1\|WP_009198198.1\|1257312_1257681_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|378968	pfam12840, HTH_20, Helix-turn-helix domain. This domain represents a DNA-binding Helix-turn-helix domain found in transcriptional regulatory proteins.	4.71772e-12
NZ_CP040503.1\|WP_009198203.1\|1254208_1254760_-\|AAA-family-ATPase	gnl\|CDD\|225804	COG3265, GntK, Gluconate kinase [Carbohydrate transport and metabolism].	1.17715e-67

>NZ_CP040503.1|WP_009198205.1|1252768_1253686_-|DUF4261-domain-containing-protein
MTEFPVSMIHPDAPEMLSATALFTAPIDLEAAAARVGTLWNESIASEWEEGGSILRFALRDVVVLLSPVPGEAVPERGRLPAHGFHVALTCFAPMQDVGGFGAGAGGFGPGADGLRRENGGSGGEFGDRAVEAGGSGIPGFTGEEIAELEGLPREIGLRRRALTAHVVLTEVADALMREKSAVGLFRPELGVVQPPRMTVELADLLSKGQAPIPLWVGIRVSKPDLVYGRTLGLPLFGHLDLEVVGSLHSEEEVYAMLSNVVDYLLSADAFLLPGQSIGYRDGKDLAVSQAVSPADRAAVLHIGF
>NZ_CP040503.1|WP_083786110.1|1250701_1252318_-|HNH-endonuclease
MTLDDVDVAGVLCPAGVALSQGFAYAGGGGRVSDRGRKSGVGESVNGLKADISILAGLDVSKVSDEELLAGAEALAGLASRLGAVRGRWLVAIGERGSWRASGERTLVRWNEKASGQSPAAAAREIARAQSLGEELPVMAAALESGEVFAEHVDGVRRVFSTPALRESLRREGVQEEIVRWARRSAPREFERRLRARALREDPAMGVAAEKDEAAREKVVFSPSGWGMRVSGWLSSETSALVDTALSALMGRKGADDARTLPERRAGALVELASVRLDEGTLAAGARIRPHLSVHVPLATFIRLENAAGGCPALDANDSPEGSLSMFKSGVAATGSVDARGVGAVEAGGVNDGVNRDASRRCVETGGQGRAGACLEKVRRQRKKLGPLLAVIPSAIDLKALAGAEPAAFDDGTALSMTQLARLACDSSVGRIVFSATGEVLDAGRSKRLFTPGQTRAVIARDRTCRYPGCTETIPHGQIHHALPWKRGGATDLANAVLLCWHHHALVHREMTTIAHHDGGFVFTRPDGTIIGTRRHGV
>NZ_CP040503.1|WP_083786171.1|1249754_1250699_-|queuosine-precursor-transporter
MGRERRLNARRSRVQASRRVRAALHSTRTTERFDVSVSNRPPWWQRGANPASRTEVPVLKEFSVSHRHVRRGYFDIVAVCFVAFLLLSNIAATKLIGVDIAVGGFSWHLVFDGGAILFPLTYILGDVLSEVYGFRRARRVIVTGFVVQILASLTFWLVQIAPADPDYKNQAAFEAVLGQVPRFVAASLLGYLAGQLLNSLVLVKIKKAFGEKRLWVRLLGSTVVGEAADTAVFCLIAWTGNAGWATIFNLMLVGFAYKVGVEAVFLPLTYAVIGFVKKTDPAYAESSAEEQASCGERVSCEEGVSKADGKEIAK
>NZ_CP040503.1|WP_009198209.1|1248510_1249758_-|tRNA-guanosine(34)-transglycosylase-Tgt
MTFEIRARLDAHPLARTGVLATPHGDIATPAFVPVGTKATVKAVAPEAIADVGAQAVLANAYHLYLQPGSDIVDEAGGLGKFMNWPGPTFTDSGGFQVLSLGSGFKKVLSEEFSGSPHADGTVAPWKERLADVDDDGVWFRSHLDGSRHRFTPEVSMRIQYELGADVIFAFDELTTLLNSRAYQEEALERTRRWALRCLAAHRALTAEREGKPYQQLFGVVQGAQYEDLRRKAARDLGAMEADGQRFDGFGIGGALEKENLGTIVGWVSQELPEDRARHLLGISEPDDFFAAVEAGADTFDCVNPSRVARNAAIYSPDGRFNLTRAQFRRDFNPLVPGCGCYTCTHYSRAYLHHLYKAKEMLFSTLATIHNEHFTVQLVDGIRAAIETGDYADFKEETLGRFYAGKWGRSAGEKQ
>NZ_CP040503.1|WP_009198210.1|1247059_1248481_+|hypothetical-protein
MGFIDWAFDVAAAHPDLTGALIDLDGEWLDILLPDGRTFRFRPGQMIDKSKPEPVRRKLLDRLISIGVARAESAPSESGPSASARFESDASDASVESDASAPEAGAAFDRSSGSEFFDEAPPEDEPSAVAAERLGPLDASSGESVLAHIMPIVRSADYFVASHDHARDDSMIYVPLTPFVGAGIAIDGRDLITPMYFSDAERLGLPTDIVGFFQQALMHLRTSDLTNGQPSVQVQPGTLAGAQIFEFAGPPSYQSSWFMDVEMALTVAESLSSVHDDGLALFVPASRDLAFVVMADDPHLAPLFQYLSRAAADAESIYPLPHVVTGDGWSEWIPMNDHPAARILSKIRARSRAAIYSVQEREMRTWPNDFGRLAPFEVIRDGALTSSATRWTSLDGFGSVPDAEYIDFVRQKSPHPWDAEASDRVRLRTQVARDVWHEGLSPMHNVWPPRWNVSGFPDDAQMAALKEASTREF
>NZ_CP040503.1|WP_009198213.1|1240494_1246470_-|fibronectin-type-III-domain-containing-protein
MSLPRSRDLTRDLTRDAPRPRRRGLSKRTQRLVSTGATAAILLAYGAAIAASQGIDRAELSLNDGGVWVTNQSSRTLGHVNYPSQSIDASDRTKTDKFDVLQEEDTVLYRNMEAGTLAAVDPAKSLIGTEQQLGTVDGVGLGGGTIGLIDSKAGKVWTTGFKSLPGFSPEAAEPTTEGVEDGTMAVGKDGSVHVVSAKEKVLRTMQAEGSAFTRIEHKFPDELASVKGLQISSVGDKPVVLDPDSGKLLLPDGKLVSLGDSNGLRLQEPGPNSSDALVASSTSLYRVSLDDGAVTQKAADPDNPNARGSAAPPVLHQGCAYAAWANTGRFVRDCDGNADDVSRPAEKLEASKSVRFRTNRKIIVLNDVANGNVWLPDKDMVLVNDWNNINQSEDVDDDKKEDSSDLNTQQQDPNRTDENHPPKAENDSFGVRPGRSTTLPVTFNDNDEDGDILTVKALSQPSFGTVRPGRNGQALQIDVPEGATGSTSFTYEADDGRGGKATATVNVSVHPFSQNAPPVQRINTSAKLSSGGTTTLQVLGDWIDPDGDQIYLKSAAGTKGLNASFRETGSVSISDLGQGAGVRNVNLVVSDGQADTNGSVVVEVTDGVNQPPRANGDLVRVVAGESTTVDPLANDTDANGDLLKLVSLGPSPQGLTAKASSDQSTVTVSASKPGTYYQTYFVSDGPTSSMGIIRVEAVERDANSTPIAENDIAMLPAGGQSLVDVLSNDSDPGGGVLTLQSVQTEPGSKLVVSPYNHEHARVSAPAGLDAPETFTYTVSNGSQTATGRVKVIPVPAADAQAPPVLADDQLVVRAGDVGSVRVLANDRSPGNLKMTVLPNLQSNAQKDQGEVFLSDNVVRFRAGKKPGSVKVVYTVQDSLGHTESATVNITVTAADAEKDSPPIPKNITARAVVGEKLNITVPLDGIDPEGDSVELVGPGESPKLGLAEVGGDSLKYTAGKPGTDSFQYIVRDTYGKTATARVRVGVVPAPKTNQPPNAVADQVRVRPGTKVSVPVTQNDSDPDSGDTPKLVAGSAKSRAKGLKVSERRNEVIVKTPKTAGSYPVSYRITDGRGGFAEGLLTVNVSPDAPALAPIARDDSVSRDKAFGKDKVRVDVLANDTDPDGDVYDEKVESDDEGVTVNSDKSLTIKTSDKARIVLYKVKDSTGMESAAVVRVPPARQTEPVVDTSKTIVAEAGKPKKIKINDYILTRSGRSVIMTDPSKVAASVGWNGDPLYTDERTITFTSQSDFSGPTMITLEVTDGKDRNDGSGLVRTLQLPVEVKPSGNRPPEFTPTPVQVEAGSTKPVSANLAAMTTDQDRGDDPKDFTYKVVKAPKGIDAKVSGSVLSVKADAESQPGSAGAVEVSIDDGHNSVKGQVPVTIVKTDRPLIQVASYEETVKAGTTAKVDVSKFAVNPFPDKPLSIAGQPTVSSKVGGVKASSSGTVVSVSIPHDVTGEIYVSYQLMDATGLPERSVRGQFKLSVLGKPSPVQILGARVTNKNSATVMWKVIDFNGSPVTDVVVRDVTQGDEKHCGAVTQCQLDGRTLGIDHVFEVTAYNAVGASTPTRSAPVLMDIVPNRPAGLTATPGDGSVTFSWNRVSSDGSPVTALTLNVAPGQSVQLAPGATSATVRVPNGTSVQATLVATNRQGQSEPSAPSAPVTPFGRPGAFSASVENTSVNKSGSDGRGQATVRWTSAPSNGRPIESYTVQASTGESVTVAGNKNSVVMDIGYSSQPVSFTVTAYNSKNPNSSTAASAGSVRILGSLSAPAGGRIEATGTSGEVSITNAPRGSATNGWRESELVYEYSTNGGGSWNRINGGGQIVRGLPNGQSVKLQFRARTVSENRTSLVSSSNAVVPYGRPTPPDAFSCGWEEPGDDDVVCTWSGGSHNGSSGEYTITGSGIKKSKSVDFSKNSVKIDDVGMRPVRYCIRVSQSSPQEIDSDERCNDLMPGERVGMYSVAWRSDPGGALGGRLPREALALPPEAVAFRTPRA
>NZ_CP040503.1|WP_009198214.1|1239483_1240464_-|MoxR-family-ATPase
MTQQQEQVTEQNAAWFAETFGRIVSNVGRALLGKDDVIRLALTTMFAGGHLLLEDAPGTGKTALARSIAATVQGTHSRIQFTPDLLPSDITGVTIYDQKTGEWNFHKGPIFASIVLADEINRASPKTQSALLEVMEESRVTVDGVAHETGRPFMVIATQNPVEQAGTYPLPEAQLDRFLVKTSVGYPQSAAGVEILKGAASPDRSKDLPPVISTSAVDEMSRRAANNFASEAVLGYVQNLVEATRASKDVRVGVSTRGAISMVRAARVCALSQGRNYVLPDDVKALAHVVWDHRLVLDPDAEFAGATREAVVERALEEVPAPTLRK
>NZ_CP040503.1|WP_138587122.1|1238180_1239467_-|DUF58-domain-containing-protein
MKESGARRPLRAGASRLRRAAASAADALRRLGERASGLPGVRRAIPVLRVVTGFGWAVLVLAILAWHYGRQRHWMELVCLAVLLGVAWIVAVAWTIGKVSYKVDLTLASSRVVSGETAVGELTVANTAARPCPSSVVEVPVGATVAQFGVPILSGDRAFNEIFTIPTHRRGVIPVGPVRSVRGDGLGLLRREQVWVERQDLYVHPKTVNVGSSSIGFIRDIEGAATHDLSSNDVAFHALRDYIPGDDRRNVHWKTTARIGKLMVRQFEETRRAHLLIVFDDDARSWASESEYELGVSVAASIGAAVLRERRELSFVSQLGPLPTSSPRPFLDGLTLLDARPGVVRLRDLARVAMDKTPNASVIALVTGSLVDVAEIHSGYAILPVNARTFALRADELGKTARSLIAGLPLVTVPRLDDLPLALRKAVT
>NZ_CP040503.1|WP_009198216.1|1235757_1238181_-|hypothetical-protein
MPANRLRYMDLGVLVVMLVAASMTWGPVFGDLSGYVAAVGGIAVGVAVAWAGYAARLTPWLTAVFGVACYLLFGGAIALRPVAAAGWLPNSEVLQMLMVQTIKGWKDLLTLTPPAAAFVGPTVLPYLACLVAALICGSLALRASRPEWGVIPVGLVVILGILFGSRQAPLARWIGVTVGLIGLVWCSRVIERRRVVAVSAAEAGEKASRRRRNGAFALAGAGAVAALVFAPALTDSQARYAVRDHVVPPLNVREYPSPLSDFRSYNDQHASETLFSVSGLKKDERVRLATLDVYDGIVYNVSTDPKKGFRRIGPDVSLENPPAKSRPSKLSISVGKYSGVWVPGGGLLTHLKFAGDRAKKLQDDLYYSPSEQTALTVTPLRDGDSYRIVDLVRPAPSDRQLEGHAFGAVPMEENTNVPNAVAAKTQKILKGTMSPIQQARAIEQHLKNNGFYAGGEQSPSRPGHRNQRIQAFLEAEYMQGDDEQYAVAMALMARSAGMPARVVMGFYPDSHRDGTINIKGRDAHVWVEINFDGYGWVMFDPTPPRDKKLQTQEPKPKPNPRPIVIQPPDPLDQPVELTPTNQNDDDRKKDEDAGVSRWLFYIATGLGITLLIVGPFVAVLAAKALRTRRRRTKGRPDERAAGAWEDVLDVARDGRVSIDARMTRSEQASAVTDAVAKALSGKKAPAGKKAPAGKAEVDSAPIVETARRADASVFGSGDIGDTSLTATWRSAEEAKSVIRRASTRRSRFSLKSFGARRKSKPPRAGGGRRWKQAKTFKASGPHEQGERGSAGSVYPPKRPNEKEGTHE
>NZ_CP040503.1|WP_083786111.1|1234232_1235837_-|FHA-domain-containing-protein
MNRVSADPPGRYILPRDLMKKRELMSNERVFYQPAGKRRRTTSRILSLLIVVAELGASALPIVDADFPPPGEKPMPYVACVGLIVVFIAGNCYYVAKRGTLPGLTSLGVVAVRMRDGGNAGAFAIQKYAVEAAVTLATLVVGLPFILHFTSDRFGRTWFDRIGGIIYVDTRRPIEDDDEFDVPSAASAQLAQSAGSPMAAPLQGAPSGMSAAEPSADPYAQAPGLVGPGFSRVVDQRQAPSPAYGQSAYSAPEPAYGQSAYSAPEPAYGQSAYSAPEPAYGQSAYSAPEPAYDLRYEAPAQNAPSGAGAEYSAPGYPAPETSQFAPQSQPSDSEEGRMSRRARSNRAQAQARIAERLDEYGISPAAEASPPVADSSPRQPRSTRSPRHAVSPPAAGSAAEAPASAGPGSLDETRIIERVSGSREPATVRLMFDDGVTHVLRGTVVLGRNPVVDPSWPSAVPMPVADLQKSVSKTHVALTLMPGGVRVDDLRSTNGTIVVSPDGQPVPVQPNHPVLATDGASVVFGGRRVRVTFQ
>NZ_CP040503.1|WP_009198203.1|1254208_1254760_-|AAA-family-ATPase
MSESDIPHLPAPPRAKGPVNIVVMGVAGSGKTTIGMMLAGKLGYVYAEGDEFHTQANRDKQASGLPLDDADRQPWLEAIRDWMRAENAVGHSTVVSCSALKRKYRDTLRENGARTVFAHVAPPKDLNAERMEKRRGHFMNPSLLSNQYATLERLEDDELGFVVDNPGTPEEVFVETYTRLADL
>NZ_CP040503.1|WP_009198202.1|1254891_1255575_-|adenylate-cyclase
MSDSDDVDLQFEFERKFLVRALPGDVVRHGSKQVIVQAYVFAVDGYAVRVRISFPGRSVECPAFDEATDYLGAYERRLLTGLLADAEGEASASMAVKSPAVQGERYEMESSLDLAVATQIIRRCPTVILKNRYSLWYDEDGWEFDVFAGQNEGLIVAECERLAPVVDLKIPEFCVTEVSDDMRFTNDYLSKEPWRHWGPMYAVELAARGPHFMKMDGNGGGPGKGAG
>NZ_CP040503.1|WP_040323027.1|1255779_1256922_-|MFS-transporter
MRLLSFSTLFVIGTDTFLTAPLLPLLQREFGVSVSRSGWLVSAYALGYALFALIAGPISDRLDRRKVLLAGLVGFGVFTAACGCTWGFWSLFATRSLAGVAAAFVAPQIWASIPVTVPPKAIVKTMGYATAGLAIAQVVGIPIASFLSSMGWRIPFFAIAASSAVLWTILYKGFPNVAPAASGGRLFAPYAHVARSRPLLMSLIAYLLFQTGNFTALSFIGSWLAKDFGADQNAIGTAMIIIGLGNAVGSLTGSRLVARLGERRSLLFGIIALGAIYLGTAFVSNMWVAVIVLAVAMLVGGFLFPVLMSELQSHTDLARGTVSSLASAAMYAGATIGGAIGGYLLSRFTGYSGVAVFTVVAYAVSLGVYALGGAFKRDSE
>NZ_CP040503.1|WP_009198198.1|1257312_1257681_+|helix-turn-helix-transcriptional-regulator
MGKEKLHHPAQDAIKLDGVLSALSDPIRRDILRKIASNGPQVCGDFDYDVAPSTMSYHCKVLRESGLVHTEAIGKHRQLTRRDEAIEALFPGLLESVGLPPGKGRWPEHTEHHEDAEPQKRP
>NZ_CP040503.1|WP_009198197.1|1257918_1259172_+|threonine-ammonia-lyase-IlvA
MDNQLPTGVDVVVAAQTLGSTIRRTPLDMSLRLSGIRNQDILLKREDIQVGRSYKARGAYNFISSLSAEEREAGVVCASAGNHAQGVAFACRQLKIHAKVFLPSTTPRQKRARIADIGGRWIEQVIVGTTFDEASAAAQEYAREHGATYVHPFDDPRTIAGQGTVVKEIFEQASAPPAAVVVPVGGGGLLAGTAIWLHTFHPEVKVIGVEPEGAPSMRAALDAGHPVTLPHIDGFADGTAVARAGDITFEIARQFVDEIVVVPEGALCTEMLELYQVEGIIAEPSGALASAAVARFLPDLPDGPVACVVSGGNNDVSRYADIVERSSVYEGLRHYFLVTFPQKPGALRHFLDGVLTDGEDIVLFEFTKKNNRETAPALVGIEIQEPERIGELLARMEESPLSIEKLEPDSPVFSFLL
>NZ_CP040503.1|WP_009198196.1|1259604_1260210_+|acyltransferase
MGLKKFVAKTYMRFSRWTCVTDPLPEKVVLIGAPHTSNWDGFFMVMAFWSIDRDYKFLVKESLMKNPLTRPLIRLAHGIAVNRSSSNGIVGSIVEEAKNSDEFALVIAPKGTRANREYWKSGFYRICLETGLPLQLGFVDRQRREYGWRHSIVLTGDVEADMEKIRSFYEGKLGKRPQYSNVPRLRAEDDVEARERLLGGI
>NZ_CP040503.1|WP_083786108.1|1260641_1261409_+|TetR/AcrR-family-transcriptional-regulator
METSPSMHSQAASAKQARFAEPSARPKRGKASGDKRRTDTRARLAAATVEIIDASGWPSVTLGAVAKACSISIPAMYKHFPDKAALFEAAQEEMSGRLGALADAAAHESPVDSIFDVGERLIAYSEEHPNLLEFAFFGPSSNNTSAVDAGAGARWELLAFVHREIGRLVESQPLPPWRSADEAGRDLFVSLWSFIQGYSKLVTSGTVRHRSAFLKAALRSVLSITTAQTSDEEAPSPAEGAQAAQAKGGDCADKK
>NZ_CP040503.1|WP_009198193.1|1261622_1262213_+|NAD(P)H-dehydrogenase
MSHTLVVYGHPYDKSFNHAILEAVTAGLGKAGKKYKVIDLHADGFDPNYSTEELSLYKDGGTADPLVTEYQKLVDGADSLIVLSPIWWSYLMPNVKGFFDKVMKKPWAYIDTKTGLKGKLQHISKSWVITTAIAPKWYLRLFAGNPIKGTFISTVMKSLGLRNVRWTHFGQINKQGGGRHEKFLREIREQAEKFGG
>NZ_CP040503.1|WP_009198192.1|1262216_1263203_-|LLM-class-flavin-dependent-oxidoreductase
MTVYSLLDLAFVGPRETPSDAFTRSVLLAQRAERLGFERIWYAEHHNMPTIASSAPAVLISHVAARTSKIKLGAGGVMLPNHAPLIVAEQFGTLEALYPGRIGLGLGRAPGTDPRTLRALRRDPNAAENFPDDVAELRGYLADATVIPGVNANPGRGSKVPLYILGSSLFGAQLAAALGLPYAFASHFAPEMLEQAINVYRARFRPSEQCAQPYVIAAANFIVADEEEAAKVQHAEVLRRRVRMFAKGAEEISDADLDAYIASGKADQIVGMLKYTAVGTGEDAKRFLDGFEATTGADEVMLVNLSPGTAQAERGLDLLAQAVVRSAR
>NZ_CP040503.1|WP_009198191.1|1263255_1264014_-|twin-arginine-translocase-subunit-TatC
MSLASHLSELRSRFIRSLAGVCVGAVVGWFLYEPVLDFILEPLTELEDSRTQINFQTIGAGFDLKMRVSLWIGAIVSSPWWIYQVGAYIGPGLKRNEKAYGAAFGCVGVALFAAGAFSAVRMAPHAVRILQSFVPDGSYSLLEAGSYVTFYIRLVIAFGISFLVPEVLTALNFLGLLSARRMLGAWRWAVVLAFVFAAIANPLPSPWPMTVQAFVLIALYLAAVLISWVNERIRARGRSGERTVLTGERARE

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Crispr_ID: NZ_CP040503_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040503_14

1284221-1284309

Orphan

Consensus_repeat	Method
GCTCGCCCCGCGGCATGTCGGATGCTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040503_14

>merge|NZ_CP040503|14|1284221-1284309|CRISPRCasFinder
GCTCGCCCCGCGGCATGTCGGATGCTGCTCTGATGGCTATCCAATGGGGTAACTGGGTTCAGCTCGCCCCGCGGCATGTCGGGTGCTGC

>NZ_CP040503|14|13|1284221-1284309|CRISPRCasFinder
GCTCGCCCCGCGGCATGTCGGATGCTGC	TCTGATGGCTATCCAATGGGGTAACTGGGTTCA
GCTCGCCCCGCGGCATGTCGGGTGCTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040503.1\|WP_083786105.1\|1292689_1293700_+\|Fe2+-enterobactin-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|236806
NZ_CP040503.1\|WP_138587247.1\|1293845_1294832_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|376439
NZ_CP040503.1\|WP_083786106.1\|1278273_1279302_-\|HesA/MoeB/ThiF-family-protein	unknown	unknown	gnl\|CDD\|238386
NZ_CP040503.1\|WP_009198174.1\|1274772_1276203_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009198168.1\|1280481_1280733_-\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|340452
NZ_CP040503.1\|WP_138587245.1\|1272859_1273702_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009198170.1\|1279320_1280274_+\|molybdopterin-converting-factor	unknown	unknown	gnl\|CDD\|238451
NZ_CP040503.1\|WP_009198176.1\|1274199_1274547_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009198161.1\|1287043_1288006_-\|sce7725-family-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_138587124.1\|1291034_1292471_+\|NAD-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|223358
NZ_CP040503.1\|WP_009198152.1\|1296078_1296900_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP040503.1\|WP_040322515.1\|1271911_1272724_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_138587123.1\|1288012_1288894_-\|sce7726-family-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009198165.1\|1282418_1284161_+\|HtaA-domain-containing-protein	unknown	unknown	gnl\|CDD\|367875
NZ_CP040503.1\|WP_138587246.1\|1284513_1284867_-\|excalibur-calcium-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|377566
NZ_CP040503.1\|WP_138587248.1\|1294999_1295992_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|227119
NZ_CP040503.1\|WP_009198162.1\|1285950_1287051_-\|RES-family-NAD+-phosphorylase	unknown	unknown	gnl\|CDD\|378053
NZ_CP040503.1\|WP_009198159.1\|1289078_1290521_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|366166
NZ_CP040503.1\|WP_009198167.1\|1280734_1281871_-\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
NZ_CP040503.1\|WP_083786107.1\|1276775_1278365_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238089

Protein	Function_ID	Function_description	E-value
NZ_CP040503.1\|WP_083786105.1\|1292689_1293700_+\|Fe2+-enterobactin-ABC-transporter-substrate-binding-protein	gnl\|CDD\|236806	PRK10957, PRK10957, iron-enterobactin transporter periplasmic binding protein; Provisional.	1.97624e-145
NZ_CP040503.1\|WP_138587247.1\|1293845_1294832_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	3.82313e-81
NZ_CP040503.1\|WP_083786106.1\|1278273_1279302_-\|HesA/MoeB/ThiF-family-protein	gnl\|CDD\|238386	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). .	1.71887e-86
NZ_CP040503.1\|WP_009198165.1\|1282418_1284161_+\|HtaA-domain-containing-protein	gnl\|CDD\|367875	pfam04213, HtaA, Htaa. This domain is found in HtaA, a secreted protein implicated in iron acquisition and transport.	5.33779e-43
NZ_CP040503.1\|WP_009198168.1\|1280481_1280733_-\|MoaD/ThiS-family-protein	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	1.02298e-11
NZ_CP040503.1\|WP_009198152.1\|1296078_1296900_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	2.00578e-125
NZ_CP040503.1\|WP_009198170.1\|1279320_1280274_+\|molybdopterin-converting-factor	gnl\|CDD\|238451	cd00886, MogA_MoaB, MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.	5.52694e-45
NZ_CP040503.1\|WP_138587248.1\|1294999_1295992_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|227119	COG4779, FepG, ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism].	1.27936e-86
NZ_CP040503.1\|WP_009198159.1\|1289078_1290521_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	2.93822e-08
NZ_CP040503.1\|WP_138587246.1\|1284513_1284867_-\|excalibur-calcium-binding-domain-containing-protein	gnl\|CDD\|377566	pfam05901, Excalibur, Excalibur calcium-binding domain. Extracellular Ca2+-dependent nuclease YokF from Bacillus subtilis and several other surface-exposed proteins from diverse bacteria are encoded in the genomes in two paralogous forms that differ by a ~45 amino acid fragment, which comprises a novel conserved domain. Sequence analysis of this domain revealed a conserved DxDxDGxxCE motif, which is strikingly similar to the Ca2+-binding loop of the calmodulin-like EF-hand domains, suggesting an evolutionary relationship between them. Functions of many of the other proteins in which the novel domain, named Excalibur (extracellular calcium-binding region), is found, as well as a structural model of its conserved motif are consistent with the notion that the Excalibur domain binds calcium. This domain is but one more example of the diversity of structural contexts surrounding the EF-hand-like calcium-binding loop in bacteria. This loop is thus more widespread than hitherto recognized and the evolution of EF-hand-like domains is probably more complex than previously appreciated.	3.05307e-15
NZ_CP040503.1\|WP_009198162.1\|1285950_1287051_-\|RES-family-NAD+-phosphorylase	gnl\|CDD\|378053	pfam08808, RES, RES domain. This presumed domain contains 3 highly conserved polar groups that could form an active site. These are an arginine, glutamate and serine, hence the RES domain. The domain is found widely distributed in bacteria. The domain is about 150 residues in length.	7.87714e-15
NZ_CP040503.1\|WP_138587124.1\|1291034_1292471_+\|NAD-dependent-malic-enzyme	gnl\|CDD\|223358	COG0281, SfcA, Malic enzyme [Energy production and conversion].	8.90171e-174
NZ_CP040503.1\|WP_009198167.1\|1280734_1281871_-\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	3.07853e-159
NZ_CP040503.1\|WP_083786107.1\|1276775_1278365_-\|hypothetical-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	1.999e-16

>NZ_CP040503.1|WP_009198165.1|1282418_1284161_+|HtaA-domain-containing-protein
MHNNRVPRRTRRSLATATVLTAAAALAAAPLFSASAFAAHESAPGSISRLEPAKPAQLTGSAEWGLRQSFRSYIKTGPAHGSWELLDGATGEFNFPVDDGQSITAETPGTITFKGGVHFTGHDGQLDITIANPVVKFTGPDTADLLLNVKSKAMGAADVTDYGQIEFAKLSNITIQHDGEKKLTVKAPKVVLTAKGAQGFANFYKEGTELDPFSFEINETAAPSPSPTPTPNPTDPAPSPTDPSPSPTPSSTDPAPSPTPSPTDPAPSPTPSPTNPAPSPTDPAPSPTDPAPSPTPSPTNPAPSPTDPAPSPTDPAPSPTPTPDPSPKPPADNSQKPIADPCLADDACNLYFADQFPASIAKLGMKIPAGGEVIAGDWDGNGVSTVAIRNGENYTFYDSNRSDAKTTTATFPGTGSGQVLVADFNGDKKDDIAVKNGNVFSIKYNATASGAADAAVPYGKAEDYGLAGDWDGDGKATLGVRRGYTNLLRDTLTGGEADRTFAYGRNDDVAYVGDWNGDGKDTVSVRRGAILFVKNALSGGDADTSFTYGRASDKLVVGDWTGTGKDTVAVVREQAKGGLG
>NZ_CP040503.1|WP_009198167.1|1280734_1281871_-|GTP-3',8-cyclase-MoaA
MNTTSVPTPVRASPVVHLGLPRLRASGAATADRPRVPELIDRFGRVARDLRVSLTDKCNLRCTYCMPPEGVQPAPGERILTDAEVVRLVRIAVERLGVREVRFTGGEPLLRKGLEEIVAATSSLCTDVGTPVETSLTTNALGLRHRARRLKEAGLTRVNISMDAADRETYAALTRRDRFDDAVAGARAAAEAGLLPVKVNAVLVRGVNDAQAVRLVAEALASGYELRFIEQMPLGPSGQWTRSGMVAAEEILGRLEGAFELVARPGTERGSSPAELWDVAPGKVDGVEHPGGTVGVIASITRPFCGDCDRTRLTADGQVRSCLFAREETDLRSLLRTGADDDTIADAWRAAMWGKQPGHGVDDPSFLQPSRTMSAIGG
>NZ_CP040503.1|WP_009198168.1|1280481_1280733_-|MoaD/ThiS-family-protein
MTVNLRYFAAVAEAAGVTEESVSLPAGATVGDLRAALIAARGAGFARQLAVSALLIDGAHADDAALLPSGAVRADVLPPFAGG
>NZ_CP040503.1|WP_009198170.1|1279320_1280274_+|molybdopterin-converting-factor
MRIAVITVSDRTFSGQRKDVSGPLAVRLLADFGEVEGPAVVRDGVESVQAAIRKVVDSGADAILTVGGTGITSRDLTPEATEPLLARRLIGVEDLLRDNPRVPTAALSRGVAGVIEGDGHRVFILNAPGSTGGVRDAVSAVGPLLGHIVDQLADGDHPAPHKAATIAIQNRGRSDGSDAEAIVAGVTAEPIDMEALAAAVDDPSAGAIVTFCGQVRNHDDARPVVSIDYEAHPEAGNVVRKIAADVAAGSGACKIAVLHRTGGLRVGEIALGAAVSASHRKEALRVLEAVIERVKLRLPIWKRQEFADGSAEWTGQA
>NZ_CP040503.1|WP_083786106.1|1278273_1279302_-|HesA/MoeB/ThiF-family-protein
MRAFRFASRMWAVLARVLCDALRRDAPLFFITLRKAMPDRHRRAATLTWRAARSARRVTGSARRVTGSARRQRLRVLRISACCDARRYHGGMSLRPAVEPESVLDNRQRTRYSRQILLHGEDGQARLAAARVLVVGAGGLGSPALMYLAAAGVGTIGIVDDDVVDLSNLHRQVIHDSTAIAMPKAVSAAMKIEALNPDVDVIVYPERLTEENAAQLMFGYDVVLDGSDNFFTRYAVDAACSELSIPEVWGSILRYSAQISVFWTGGRARQFGVKEPGVCLRDLFPSPPPPRGDVELRRGRRDWKFVRPGRLDHGGRGRQAHNRRRQTSSGNRAGARRPEQPI
>NZ_CP040503.1|WP_083786107.1|1276775_1278365_-|hypothetical-protein
MAGEAVKLITGVGKPLLGTVLALDALNNRYETISLVGRPDRPAPLKGERLMNACGVPSRSERGGLGSDTFGSNGLGSNAPRSHLAEPGAQWPRGSELDASETLVPGMPGASMPKVREPEFDPSETLLPGADMAWANASREPEPEFDPSETWVPGAGAPRVREPEFDPSETWVPGASMPGAGLPGVDPSETLVPGAGASKAPKPELEASESLIPQAGETGAFVFETNAPEARVSEQGDAAKAAASESGPAKSDPAQLGSTESRPVESGAAGSGAHEPGDVDSSSPQVRVSEPSVPGPSASRMPAPEANASEARASEPGAAQSRSRRAQSRGAIRSESDAARSRQGAAESKPGTAQSKPSAAVPEADALQTKPGAAQTEPGVTRLRPRAAQPESGAAQAKSGVAQPGPGTVTPKPDAARPNGHDVDVPEANVREVAVRLAQGAKMLDVRESHERAICAIRPSTHIPLADVLADPSAAAKRLPDEPVYVYCLGGVRSMQAAKALAAEGVEVINVAGGLKQWWLYVDPSMPRY
>NZ_CP040503.1|WP_009198174.1|1274772_1276203_-|hypothetical-protein
MAYDPKKECDYEDVPELVGYLKRSAIDAYMISENSGITSHCTIMDDRYVVSFPIPLVGSSDRDIARPGMDGQGGGEVLGSGSDGGDADRTSEFDKIRWSIDKIVEPWKQLPDPKDVDNEIEKWITAVSPLAKEPKTVGNKSTGGGTIFTNLDQAGKALGNMSGEVIHKVEAFVAKLASVTGGLHDKTMVLGGALNSEMKMFEETRTSVVKALQEGIKVFNAVASNGEKGFKVSLEIVSTTIDAALIFTVPEVAIEKKVLQTSPKALQSLKSSQDATVDNKEVADYESAKNKLESAFDAINKSVTKAEEGVKDMLIGNMDSMAESGHREYYDVTLDPIDSSAIEPAPDLNVDYGKAKGVCRKFGDVRTSVIEAKDSLPRVSMFTCLLRSGVIGIGSYGPAHVFSDLNVRIEKLLKNLADDIENEAKNFDLAVEAIVSEDAQARSRLQETVDYIKGNPGDPWAESKPAPQRVKGNTIV
>NZ_CP040503.1|WP_009198176.1|1274199_1274547_+|hypothetical-protein
MAQAHGCSGLGSDLGSSQSSSLSALPLFDLPFDDPIPFEGPPSPEELLSLNDLLSPEDPLSLEGSLPLEGLGLGTDRKTTAKAISKETMSTLRSRRASWQSRWISLLILSFASIL
>NZ_CP040503.1|WP_138587245.1|1272859_1273702_-|hypothetical-protein
MNVDLKKGWAWPGKLAGVKRRSRLVRVVLALVSFVVAGCKINGAVEFQANGDVKFDFTFEDSRDSMAKIEQTCEGVRTIFVTKNRFVDSPKVEDVTPAGGHLTCRVTSDKPFKGKMKLTERDGKYHFKYYGAHDDDDTDMSDFKTRIVVSMPGKVTRSSLGKVQGNKVILEDLDFLTYGVEITAEKEAAGPASSSGLPGKKADASSLAGGFPVWAWAAVGTGALVVIAGLAFVAGRRRGAVEVFSDGSPFRPIGSSVGRGSASEGGGEDPVSSPFDVRGV
>NZ_CP040503.1|WP_040322515.1|1271911_1272724_-|hypothetical-protein
MKRQPLFYLLTCVLLALFTTSCRIEATVNMHVDGTATTVVEFEDSDGMMQKVNQTCADLRVHFKQAGKFAENAKMEDVTSPGGRLRCRSTSNEQLGENLKLIDNGKTYSFIYPDSNKGKQEYKGIKARTTIVMPGKIIRRTKGAIEGNKVIIDGLDYLTSGFSIVSEKSDEASKPIDSSSPTKRADSSSSSVGPPAWAWAAVGTGALVVIAVLAFIAGRRRGAAKAAAGNWRDGMLAGGGYVPPSGGGTSPHQQVFGDGSGQGSQGHIPM
>NZ_CP040503.1|WP_138587246.1|1284513_1284867_-|excalibur-calcium-binding-domain-containing-protein
MTSERDSCKSQLDNAKQASQNSQRSSAVTQTLGGSGTAGDSGASSGGAGASGASGASGGSDSSGGSGYGTGRSSGGSAYYPNCAAARAAGVAPLYRGQPGYRPGLDRDNDGVACERR
>NZ_CP040503.1|WP_009198162.1|1285950_1287051_-|RES-family-NAD+-phosphorylase
MPEEYCCPNCFDDSGIAEDLIPIIINNLDSTDLPSCCSFCKDTRGPFVPPSCLKQWFDLVIDCYTIDSFGKSLVDIISSDWGVLSSLETSVAKRLLESISGGDYEVNKKFSPRVELAEDENGDLTFLREETWDALREEVMHKNHWFHDNELQLEYLANAFQNVAFSEAEESSWYRCRIARSGATYQLKDMGAPPRDKVKYGRVNPSGIQCLYLASDTETAIAEVRPHAGETVYVAEGRGKLEGIVDLCNPRSRVSPFTLQSSSEIMKVRNGLSFLRHLGVELSSPVQPSSSSYEYIPSQYLCEFIKYKGFNGILYKSSVCSTGKNLALFNPNWCNNFTNLRSYQISTFSVSICEKNSLCRFNMSIE
>NZ_CP040503.1|WP_009198161.1|1287043_1288006_-|sce7725-family-protein
MYYPYLRGKQFELLALRECAKISPSGFVPIIEPVRQPLNRLKQTLADLSEADTDAIVIANPKYGDYRDKKDEITNLLTNLPQGKSKLYFGILLTSEISEDEIESLITTYNRQNIALIHYGFKNWSYLTKNAEINDSAQFNIFIEGFSGSLYRRRYLNSNRRILIRDGFQRKRNAEYKDPNVEQFSELHVTYQDYSMSGYGDFLTIGDAYSEGGGPAYAVAIHLTYIDPDQDDEMFVQHFVSDTNDTPTDPAKKFAEALRKLVEKLDCSDSCFEETAAVAEFRKLHEGKHFPGLGYVKKLSIMHHIETLAKYGSEKGDVNA
>NZ_CP040503.1|WP_138587123.1|1288012_1288894_-|sce7726-family-protein
MDQNQLSILRRLFSTVVVHEFGRKASSPLFARLVKRLNLPPGCSPQTSVSNLFETGFKILKTSGLRDEYVYRSAIAQKILIGRHSLNTATMLNELRVGTAKADVVVLNGTSTVYEIKSERDSLVRLENQLNNYRQVFAHVNVVTSENHLDTLRRIVPKGVGIIVLSSRFSLRVDQEAVKTTEMMSSDMIFNVLRTREAKKVLENLGICPPKVPNTQVRGCMQEIFMGVDPIAVHDQMVQVLRRSRSQSALTDFVELIPRSLLASALATKPDKRSRERIIEAVNTPLIKAIDWK
>NZ_CP040503.1|WP_009198159.1|1289078_1290521_-|alpha/beta-fold-hydrolase
MYDATFSLPGHTMIEHSLSVPLDRFGALSRFAADEVAAIPEKIELFAREYVRHGNEKLPRLVYFQGGPGFGGPRMAPIGSWLDTALNHYRVVLLDERGTGRSHPIEAQAVSAVGPTPVQAAFISCFRQDSIAADAEDLRLAFGGDPWSVLGQSFGGFVVTACLSQAPQGLSEAFVTAGLPSVDGRADDVYRLTYAQTDVRNREFFDRYPGDESVAWSVAKHLADVEERLPTGERLTPGRFRQIGICLGRSYGLEQLHFLLEDPFWTVRGARRLRPQFLDRIGAQVSLAPAPLYGVMHEAIYAQASTGATAWSADRIRGEFPQFRLPDVAAGAAAESELEAEGRGFRFTGEHMYPWQMREDPALAPIADAADALAADPSLRRLYDAEALAANGAAAERGVRAGRGGSATNGAAAGHDATGVRRVPAAAWVYKRDMFVPYSISMETARLAGFRTLVSDTFHHDGLHSGGPQMILKLIEAVRG
>NZ_CP040503.1|WP_138587124.1|1291034_1292471_+|NAD-dependent-malic-enzyme
MAMPSPSYTVTLRVSVPAHPRATQHLVEAVADAGGLVTGIDTVESLEKHLIVSVTCDCVNTAHVQEVRGNIEMMVGTVVEEVSDATMQAHIDGKISVELKNPLRTRQDLARVYTPGVARVCKAIHKNTAEARRLTVKGNAVAVVTDGTAVLGLGDIGPEAALPVMEGKAALFKRFGDVDAWPVCLDTKDTEEIISIVKAIAPVYGGINLEDISAPRCFEIEERLREELDIPVFHDDQHGTAIVTLSALINALKLVGKRIENARIVVSGVGAAGSAIIRLLMLHGATDVIGCGRNGALGPFREEANPHRNWLAQNTNPRGFQGSLKEALAGADVLIGVSSGNILTGDDIATMADDAIVFAMANPTPEVDPIAAGRHAAIVATGRSDFPNQINNVLVFPGLFRGMLDAGASKIDDEMLRQAAIAVADVVSDEERNANYIIPGVFDPRVVDKVADAVVRYVTGKEPRHKKKSKRDKAGNAK
>NZ_CP040503.1|WP_083786105.1|1292689_1293700_+|Fe2+-enterobactin-ABC-transporter-substrate-binding-protein
MTSRLSRVLAALLLTLTTFLSACSSDSKDATSSDGASNSSGAESGTWPRKIKHEKGELTLKSKPKRIVSTSVTLTGTLLAIDAPVKASAATTPSNITDNKGFFSQWSSIAKKKGVDVLYPNLKFDKEALIAANPDLVVIASSGADSAIDHYKEIAAQYPTIVVDYSKQTWQELSKQLGEATGQEANAKKATADFDKYVADAAKKIKAPEGNAAVVSYNGPGKEQGVAKKSGPQSRLLEKLGFRIVEAPADLEARKDKRGDFSFVTHENLTKAVNPQTVFLLTGDQKTESSFLADPVVANMPAVKSKQVYGLGSTSFRIDYYSGKQMIDAVVKRLGG
>NZ_CP040503.1|WP_138587247.1|1293845_1294832_+|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MPWAALSTGLLVALAAASIATGSRLVPLHEVWDALFDFDPKNDAHLVVRELRLPRTFAAIMAGACLGLAGALAQSLTRNPLAEPGTLGISQGAASGVIVGLFFTSASHVAVYVWFAFIGAALTGALVHRLGRAETAGTNPTRLILAGAALSIVLWALNTILLLAQPAWVQQIYRNWALGSLAGRGWDNLPVLIACLAAGAAASFALAPSLNAATLGADMSKALGVKPRATPALTNLAIIVLAGGATAAAGPVVFVGMACPHAARALAGTDHRRLLPFSALLGATATLASDTLGRIVVYPGEVGVGAMTSIIGAPFFVWLVRRGKVLGL
>NZ_CP040503.1|WP_138587248.1|1294999_1295992_+|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MEATRSALVVGAAAAALLAAVGLVHIGTGSTPIGAEEIVKVLFGHSGDEQTVRIVETVRLPRFVAALAVGAALGAAGAVFQSVSRNPLGSPDVIGFTTGAATGGIVSVAVLAGEARETAFAATCGGMATATAVYLLARRAGHSTGYQLVLVGIGVSSFLTAVNSLLLAYGDAEQTALASMWLSGSLNARTWEQALVVAVAVVLLVPALCGMSRRLDILEMGDDQATQAGIRPERLRVAAMLAAVALTSTAVAATGPIAFVALAAPQAVARLTRSGRLHIFTSALMGSTMLTASDVASMRVPVGVDVPVGLATALIGGVYLLWLIARSPTV
>NZ_CP040503.1|WP_009198152.1|1296078_1296900_+|ABC-transporter-ATP-binding-protein
MDGVKRTKGGAGNPLVGRGLHLAYGNTTVSRELDVEVPAQSFTAVIGPNACGKSTLLRALSRLLEPREGTVLLDGREIASYPAKKVARRLGLLPQSSNAPHGITVRDLVARGRFPHQSFFRQWSAKDDAAVDAALAATRTLELADRAVDSLSGGQRQRAWIALVLAQETPLLLLDEPTTYLDIAHQLEVLDLCRSLHESGDFTLVTVLHDLNLAFRYATHLIVMKEGRIAATGAPAEIVTAELIDEIYGISCMCIPDPHTGLPLVVPLDARQT

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Crispr_ID: NZ_CP040503_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040503_15

1340427-1340505

Orphan

Consensus_repeat	Method
ATCTTCAGCCCAATCCGACCGACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040503_15

>merge|NZ_CP040503|15|1340427-1340505|CRISPRCasFinder
ATCTTCAGCCCAATCCGACCGACCCCAATCCCGCCCGACCGATCTCAATCCAATCGATCTCAGCCCAATCCGACCGACC

>NZ_CP040503|15|14|1340427-1340505|CRISPRCasFinder
ATCTTCAGCCCAATCCGACCGACC	CCAATCCCGCCCGACCGATCTCAATCCAATC
GATCTCAGCCCAATCCGACCGACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040503.1\|WP_009198114.1\|1335414_1336350_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NZ_CP040503.1\|WP_009198104.1\|1344216_1345053_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|379293
NZ_CP040503.1\|WP_138587251.1\|1326592_1327927_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP040503.1\|WP_138587129.1\|1336425_1338225_+\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|223897
NZ_CP040503.1\|WP_040322506.1\|1330177_1332652_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368712
NZ_CP040503.1\|WP_138587252.1\|1353210_1353777_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|234637
NZ_CP040503.1\|WP_050758767.1\|1356006_1356354_-\|membrane-protein-insertion-efficiency-factor-YidD	unknown	unknown	gnl\|CDD\|376620
NZ_CP040503.1\|WP_050758766.1\|1356350_1356842_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235126
NZ_CP040503.1\|WP_009198111.1\|1339018_1340362_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP040503.1\|WP_009198094.1\|1353881_1354568_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|224760
NZ_CP040503.1\|WP_009198115.1\|1332772_1335313_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270875
NZ_CP040503.1\|WP_009198118.1\|1328016_1329579_-\|CCA-tRNA-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|131739
NZ_CP040503.1\|WP_082902995.1\|1356864_1357002_-\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|366117
NZ_CP040503.1\|WP_083786104.1\|1341864_1343181_-\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NZ_CP040503.1\|WP_040322503.1\|1340618_1341572_+\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234948
NZ_CP040503.1\|WP_040322501.1\|1354794_1355967_-\|membrane-protein-insertase-YidC	unknown	unknown	gnl\|CDD\|234941
NZ_CP040503.1\|WP_009198120.1\|1325078_1326500_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NZ_CP040503.1\|WP_050758768.1\|1338214_1338925_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009198089.1\|1357390_1359166_+\|chromosomal-replication-initiator-protein-DnaA	unknown	unknown	gnl\|CDD\|234667
NZ_CP040503.1\|WP_009198117.1\|1329654_1330185_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239645

Protein	Function_ID	Function_description	E-value
NZ_CP040503.1\|WP_009198114.1\|1335414_1336350_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	2.52964e-147
NZ_CP040503.1\|WP_040322501.1\|1354794_1355967_-\|membrane-protein-insertase-YidC	gnl\|CDD\|234941	PRK01315, PRK01315, putative inner membrane protein translocase component YidC; Provisional.	1.77466e-107
NZ_CP040503.1\|WP_138587251.1\|1326592_1327927_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.94733e-28
NZ_CP040503.1\|WP_009198104.1\|1344216_1345053_-\|ParA-family-protein	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	1.86608e-74
NZ_CP040503.1\|WP_040322506.1\|1330177_1332652_+\|hypothetical-protein	gnl\|CDD\|368712	pfam06030, DUF916, Bacterial protein of unknown function (DUF916). This family consists of several hypothetical bacterial proteins of unknown function.	0.000158618
NZ_CP040503.1\|WP_138587252.1\|1353210_1353777_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	3.85469e-65
NZ_CP040503.1\|WP_050758767.1\|1356006_1356354_-\|membrane-protein-insertion-efficiency-factor-YidD	gnl\|CDD\|376620	pfam01809, Haemolytic, Haemolytic domain. This domain has haemolytic activity. It is found in short (73-103 amino acid) proteins and contains three conserved cysteine residues.	2.3666e-36
NZ_CP040503.1\|WP_050758766.1\|1356350_1356842_-\|hypothetical-protein	gnl\|CDD\|235126	PRK03459, rnpA, ribonuclease P; Reviewed.	3.0297e-12
NZ_CP040503.1\|WP_009198111.1\|1339018_1340362_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	7.45311e-122
NZ_CP040503.1\|WP_009198094.1\|1353881_1354568_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|224760	COG1847, Jag, Predicted RNA-binding protein [General function prediction only].	1.60846e-31
NZ_CP040503.1\|WP_009198115.1\|1332772_1335313_+\|serine/threonine-protein-kinase	gnl\|CDD\|270875	cd13973, PK_MviN-like, Pseudokinase domain of the peptidoglycan biosynthetic protein MviN. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. This family is composed of the mycobacterial protein MviN and similar proteins. MviN is an integral membrane protein that is essential for growth and is required for cell wall integrity and peptidogylcan (PG) biosynthesis. It comprises of 14 predicted transmembrane (TM) helices at the N-terminus, followed by an intracellular pseudokinase domain linked through a single TM helix to a carbohydrate binding extracellular domain. Phosphorylation of the MviN pseudokinase domain by the PG-sensitive serine/threonine protein kinase PknB recruits a forkhead associated (FHA) domain protein FhaA, which modulates local PG synthesis at cell poles and the septum. The MviN pseudokinase forms a canonical receptor kinase dimer.	3.0273e-23
NZ_CP040503.1\|WP_009198118.1\|1328016_1329579_-\|CCA-tRNA-nucleotidyltransferase	gnl\|CDD\|131739	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase. [Protein synthesis, tRNA and rRNA base modification].	0
NZ_CP040503.1\|WP_082902995.1\|1356864_1357002_-\|50S-ribosomal-protein-L34	gnl\|CDD\|366117	pfam00468, Ribosomal_L34, Ribosomal protein L34.	2.13801e-08
NZ_CP040503.1\|WP_083786104.1\|1341864_1343181_-\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	7.70062e-75
NZ_CP040503.1\|WP_040322503.1\|1340618_1341572_+\|D-alanine--D-alanine-ligase	gnl\|CDD\|234948	PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed.	4.36498e-90
NZ_CP040503.1\|WP_009198120.1\|1325078_1326500_-\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	4.34602e-48
NZ_CP040503.1\|WP_138587129.1\|1336425_1338225_+\|N-6-DNA-methylase	gnl\|CDD\|223897	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	1.36083e-08
NZ_CP040503.1\|WP_009198089.1\|1357390_1359166_+\|chromosomal-replication-initiator-protein-DnaA	gnl\|CDD\|234667	PRK00149, dnaA, chromosomal replication initiator protein DnaA.	0
NZ_CP040503.1\|WP_009198117.1\|1329654_1330185_+\|NUDIX-hydrolase	gnl\|CDD\|239645	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.	1.01958e-47

>NZ_CP040503.1|WP_009198111.1|1339018_1340362_+|PLP-dependent-aminotransferase-family-protein
MSDKQRNADRASANRAAVATGTRLDPWYNTYADRALGMRQSEVRSLFAVANRPEVVSLAGGMPNIEGLPLEFLAEMSSRLLRDRGASILQYGSGQGSDELREMIVEVMRPDGIRGHADDVVVTTGSQQALDLISQIFINPGDVVLAEAPSYVGALGTFRAYQANVVHVPMDAEGLVPEELVRVIDELEAEGRPIKFLYTIPNFHNPGGVCLSAERRPRIAEICQRRHILVVEDNPYGLLGFDGDPIPAIQSINPDGVVYLGSFSKTFAPGYRVGWALAPTAVAARLILANENALLCPSTFAQLSINEYLRTYDWYQQVKEYREMYHERGRAMQEALEEYMPMCSWNSPEGGFYTWVKLPEGLDAQAMLPRAVTNLVAYVSGTAFYADGQGRDHMRLSFCYPTPERIREGVQRLAAVVRAEAELVDMFGLRGGDGTKPSPGEFAWPRV
>NZ_CP040503.1|WP_050758768.1|1338214_1338925_+|hypothetical-protein
MADKAEEARAEEAGTEAEGQPRYALVFATARWCEPAVPMRAIFDELVRDLERRVVEARRSVASLTNGNLPVSNASPPAGSNSLLTSAFSRIAGVRAVVLDVDEVDAVFASRADDAASGRPPDPAFELDPLISPAFAETIDFVPMIVLMREGNRSTEDRNRATEGRNGLTDNQNRLTNSQNRPTEERHPLQKEPNSGVNRREAEGGELVRFAGQLPKLHIRDRILEALGNDLLSPAA
>NZ_CP040503.1|WP_138587129.1|1336425_1338225_+|N-6-DNA-methylase
MSESSASDARKARGAFFTPAPIARFIVDWAVRRAGDSVLDPSCGDAAFLAPAATKLLELSSVRQVAACVRKPATGEGCARKEKEIRGEGPVGEKSAGREAEVSEAVPREIRVDGVDVDPPSAAAARERVVALGAHAHVQVADFFAIPAEARYDAVVGNPPYVRYQGFAGASRTAGREAALRAGVSLTALASSWAPFVVHACQFLVRGGRLGFVLPAELLSVNYAAPVRRFLFDSFSGIELVLFESRVFDEAQADVVLLLAEGYGGSTSHAAVRQVRDERDLAAASPRPRAARHDGMWAPASPEAKWTELLAPATALANLDELRDSSALTPLSEWGAVKLGAVTGNNGYFTLSPSRARELGLDRRDLLRISPAGSSHLRGMSLTSKALAILGEEGRGTLLFRPRTPLSAAARRYIRTGSETGVDLAYKCRVRDPWYIVPLPAVPDLFLTAMNAETPRLVANSARVHHLNSVHGVCLAEELRRLGTELLPLASLNSASRLSAELSGRSYGGGILKLEPGEARRWLVPSPTLVSERLEELRSIKASVARVLRRGELSRATEMVDAALGLASAKPGSAEPGGLFAAAAALSRRRMHRGRKLGR
>NZ_CP040503.1|WP_009198114.1|1335414_1336350_+|thioredoxin-disulfide-reductase
MTEKVHDVVIVGSGPAGWTAAIYTARAGFEPLVVAGALEAGGALMNTTEVENFPGWPDGIMGPDLMDKFQAQAQKFGASVEYEDATELQLEGDVKTVVTDSSTYKAKAVILALGSAYRKLGLEGERLYSGKGVSYCATCDGFFFKDKEIAVVGGGDSALTEALFLTRFGSRVHLIHRRDQFRASKVLADRVAADPKIEIHWNKTVSELSGGETLESATLADTVTGETSVLPVAGLFVAIGHDPRTALVRDEVALDGAGYILVEEPSTRTNVPGVFAAGDAVDHTYRQAITAAGSGARAALDAQAYLEDLHD
>NZ_CP040503.1|WP_009198115.1|1332772_1335313_+|serine/threonine-protein-kinase
MNSFAQAGQVIAGRYRLTEPFPEQPPYPGVRAWNAVDTLLGTSLRILALDPSNPNASEVLDAARRSSLIDDPHVVRIISVGEDPAAHYVATEIPLGTPLSAYLHGVPFSPDQAQALTGEVASALNSARARGVRHLQLTPQHIRVGVLGEVFIDGLGVEAALANLRADSMSSSQADRMESRGITVLLARLLTGDGKSKADAVLRSAAENGSLPGALRSTCTRELRGLGALSPADLVRELAPWGAVEPSEFPSASASSKTASPAAEPVAAEGSSDRAPAEADADRGDREGEPSVAGPAASDETGSAQGDIDPLSDESVKSSGMKPKWSSLGAFAEEHPEAVDPSATAIFRPEDFGDAPEGDYVSIADGPEDEVSEDKTIETAAARDKETAEGKKAPQGKKAPQGKKKTQGGKKKSAQGKKKAGGGSVAAAQQAELPQTQVELPQTAVSLQATEPSEPQQAAGAPDPAADAAQAPGKPSGSSADDGAAFAQETERKADAGNGDATLAGQVAEKHANNHAAAEANRAEVVKGNGKGKSSAGETEDASEMPPSFLPHSGNAAGAATVRMPVSSGGQASASARTPPGQAPSQNHAAPAGQTAPAAQEEPWLLGAQPEEPLPSGNLAGEEIDRPLYNPSKVVVALALVLILVVGAWAVFKFFSPTSVSTTKPTATKSLEPTKAPSGAKKPTESPTKKEDPDKLPEPKVSSVSLLNPYGAQMEPSTVNEQDNPSQIRYLTDRKPSTSWQSWWYGDASYNGNKEGIGLAIKLSGKSKVSSIKIESKLSGGKVEWRNSSESSPNSGDVVAEGGLKPGLTLSASEPVATDTVVLWFPELSKESAKKYRLDISEITVE
>NZ_CP040503.1|WP_040322506.1|1330177_1332652_+|hypothetical-protein
MIDVKDTSRKTGAGDSKAADKAKAADNAKGGRREGRWVSALLAALVCLSGAFAAPASGAFAAPASGAFAAPRAHPASSPRPASIAHAAPSAHGASGERLSNAGASSGRSATSNARSESAPARIGRPASTVPAERKAQPTVRITSVGSPILQPNENLSVSAEVKNPGSTPITVSSSKLTAQKNVPGSRSQVLAFLHGSGSARGSAGMETLVERKDSVVVPAGSTATLTFTVRRFMLPWGATDEDWGPRGVEVSATIGERQAKDRSIVVMAPTVQVTPMPTAALVPLTSAPAEIASNPSVKSQAEHRTPTIPERIPRAVKELSAPGVTLALDPLIADVAGADLTKALASFSRERATQLILTAPGDSDVAARMHGCDDAGELDSCAKAYLDAERALATRVSDDISARLNIDAPRTDIALLPPQTDSLTATGLASAGGGPAVLSGNQTPIKGKGTTPSARMRLPGTSTAALASDTAMSAAFSGTLPENADADSTPSGSETLDALDARQLVLGLSAATYRERPSTSRVTLIEGDRAGMPYLGQGDPAKASTDSALSPENMGETVRALMSAPWVAPTTVSGAFDQSPSTVARSSLPEYRSPTGMLTRKELERIDSARKNFDAIVEISGNKALLNQTVTARAYSLTGVAWRASRDSRTEVLKAYEADGRIFLRSIAAERSSTINIISTKSEIPIHVGNSLPVSVTVWVELHSRDPRLKAGKKVKATLAPSSSTKVLIPVKAFGSGNVTADVRILNEAGASVGVTKSLQTRVRSDWENIGTGVFLAFFLTLLIVGTVKSLRKGRRSRSFSPEEVRKARREAAARAAAAKEAT
>NZ_CP040503.1|WP_009198117.1|1329654_1330185_+|NUDIX-hydrolase
MSTSAPRPSPTGRHRRKRTPRAVSAIHHPYPVVNETSAGGVVLSVKDGWAYVAVIARRNRGGRLEWCLPKGHLEGTETPEEAAVREVSEETGIFGRVLTHLASIDYWFSGADRRVHKVVHHFLLEALSGFLTTENDPDQEAEKVEWVRIDKVGSRLAYPNERRIVAAARAILSGRD
>NZ_CP040503.1|WP_009198118.1|1328016_1329579_-|CCA-tRNA-nucleotidyltransferase
MNPSYEPIHNAATTGVNRRALLLAQGHKTLGSLPPAIDELGSIFADAGHEVSLVGGPVRDAFLGLPIHDFDLTTSAPPEITERLLSSWGAATWDVGREFGTIGSVRDGVTAEVTTYRSDSYEVGSRKPKVDFGRTLEGDLSRRDFTVNAMAVRLPELELVDPCGGLDDLVGGVLRTPVTAVQSFDDDPLRIMRAARFAAQLGFDVGEDVVSAMAEMAERLAIVSAERIRAELERLMLSPAPRRGIELLVYTGVADVVLPEIAQLRETVDEHKRHKDVYEHTLTVVDQAIALEDPASKEEYEAYLLGGELEGPDLTLRLAALFHDVGKPRTRRFEKDGSVTFRAHDVVGARMAAKRMAALRFDKQTEKDVARLVELHLRAFGFSEAGWTDSAVRRFVRDAGDLLPRLMRLIRADVTSQNRRKVGRLQAGNDELAARIRDLAEQEALDAIRPDLDGARIMEILGLKPGPEVGAARNYLLELRLDEGPLGEEEAERRLLAWWSERSSGVKDSVPAAGSAPGEP
>NZ_CP040503.1|WP_138587251.1|1326592_1327927_-|MFS-transporter
MFQAGLASLFFFSPQSMTSAAGVAAAIVVMFGPYSLVGPFFGPLLDRWRRRQILLCGNAVRCLLALCVAAATWGSAGIGIVYTLTLCALGLSRFLLSCLSAGLPSVVGERELLTANSVVPTLGGLAMGIGAVAGFLIRVFLPEGSSRDVASLFVAALLYLAASGLASLLRPDQLGPKREELESQPASPSFRSTVRDLVDAAAYLTRRRTPALALATMSLHRFVYEMEFIMIILVSRNLLADPSDADAGLAYFGTLGGAMVAGQFVAVVLTPIAHEKIAPWQWVVTCLIGGSAGQATFVLAPRTGTLAVGAFLVGLGVQGAKIAVDTIVQSDASDAYRGRAFALYDVLFNLGVCAAAGVGLVALPDVGWSRDVQTALFALVWVLAFLFFWAMARLGGSPRDAGPAAGKPVPPGGETSPRATGSELGKGKACPRAGKANPQTAEEV
>NZ_CP040503.1|WP_009198120.1|1325078_1326500_-|AI-2E-family-transporter
MASQDEEPLPGSQTASPEQEPSKSAEADGGSGGNVESTARKVLAEHSAQDQGRTLPAGMKALIVFSLATFGCIGLHEVSNLFGPAFFALTLVLTVRPIHRWLIRKGLPPWLSAIFTMTALFGFLLGMVGLTVWSLIDLPDTLKSYSGSFKGLVQNVVDLAEKYNLSSGKLSKDLLDNLDFDKIVTAVTTVLEYLTSAGSLLGMISLSMLFITVDTMTMKFRSKIVYEHDSHFHDALEGFEGRVRQYWIVSSIFGAIVAVVNGIVLAFLHVPMPAAWAIFSFVTNYIPNIGFVIGLVPPALMGLLDSGWLTALWVVIAYSVINSVIQGIFQPKITGDAVGLSTTVTFLSLLFWTVVIGPLGAILAVPLTLFAKALLIDSSVQTRWLEVFIIPESEAKKRYDSGFYDVENPTDDDFVDFMSAELDEHSQSERPKTGLRRSKVRLGHKSAPESGDSGGSRSSASSSAKAAQDEHSR
>NZ_CP040503.1|WP_040322503.1|1340618_1341572_+|D-alanine--D-alanine-ligase
MSGPLTVAILAGGLTHEREVSLHSGRRLAAVLSEAGMHVKVLDVDANLLQSLKSMQPDVVWPLIHGSTGEDGSLQSLLELVGVPYVGTPPAACRIASDKAVAGAVLSTAGLNVPDSVTIPQKLFREVGVGQVLDLIKARFDFPLVVKPAQGGSALGVTIVASAAGLPRAMVDCFAYDERARVEQYIEGAEVAVSVVQTGSEPRALPPVEIAADGPYDYDARYFAGRAEYFVPARLSEEDTAAVKEAAERAHLVLGLRYLSRTDIILDDAGRAWILDVNVAPGMTETSLFPQAATADALESDTTVDDLYVEILNAALT
>NZ_CP040503.1|WP_083786104.1|1341864_1343181_-|ParB/RepB/Spo0J-family-partition-protein
MHSTSAVERKTSVRAFDQAGAVEFSEEVPSVDVRQNRTKDSKSSASRDSSTSGTTQGEQETADSATRPVAASADASSRVDSSGEDGHSSRAEVSEARDDVDAAVDVENRAVDEDGNDKSELGGGNGPVESDAGQTGGAGHAQNEQGEADEGLVEVPGATYAELPLDQIIPNTRQPRNVFDEEELEELAASIREVGVLQPVIVRPLAAPIPGQSKARYELIMGERRWRASELAGIETVPAIIRHTQDEDLLRDALLENLHRAELNPLEEAAAYQQLLEDFQCTQEELSRRIVRSRPQISNTLRLLKLPPLVQRRVAAGVLSSGHARALLGLSDPGAMERLAQKIVSEGLSVRQVEEIVALGDEPTASPASGRRRARRYGPELGELSSRLADRFDTRVKVEMGAKKGSIKIDFASIDDLNRILGVLSPGETGVDITEQKR
>NZ_CP040503.1|WP_009198104.1|1344216_1345053_-|ParA-family-protein
MKRLDAIGGSKFRVPASTRIIAIANQKGGVGKTTTAVNIAAALAQGGLNVLVVDDDPQGNASTALGARRDENVATLYDVLVGNVTMRDAMQPTEKLENLFVVPSSINLSLVDVELADQDDRMTRLRDTLREGLAATAAEGAPFDYVFIDCPPSMSLLPINALIAAKEVLIPVQTEYYALEGLTQLLHTIEGASASHNPELRVSTILLTMSSKNTNLSAEVAENVRDYFPEQTLETEIPRSVRIAESPSYGETVITFAPRSSGAIAYLAAAHELANRAE
>NZ_CP040503.1|WP_138587252.1|1353210_1353777_-|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MLEREGELRGLLGPRELKRLWTRHLLNSMAILDFIPFEAKVVDVGSGAGFPGVVAAIVRKDLRLVLVDSMERRARWLNDVVKDLSLPNVEVVHARSEDLVGKVDADTVTARAVAALRKLLPWTMPLLKGGGSLLALKGARVDEEIDDAIHLLRKYRAKWADVHVVIPFGTTEETRVLEVRKKQTNRHR
>NZ_CP040503.1|WP_009198094.1|1353881_1354568_-|single-stranded-DNA-binding-protein
MADRAELVKKLNDEGDFGADYIEELLNIADLDGDIEIGVEADRASVAVVTEGVADRRLKRLIGQGGEVLDALQELTRLAVQAKTGERSRLMLDIADYRESHRQEVAAIAREAVASVLANGEPVSLAPMNPFERKVVHDVAAAAGLASDSEGLGNARHVIVSEAAAADESLEEGESSEEGAVSDSAPSGSDDVVSAGVADDASVDIAGESTDPIDGENAGKSSASSATK
>NZ_CP040503.1|WP_040322501.1|1354794_1355967_-|membrane-protein-insertase-YidC
MDTILFPLMWVIAWIMEILRRVFVAFGLPDGAGAAWVLSIIGLTVVVRLLVLPLYNKQIRSSRQAQVIQPEVQKIQKKYKGKKDMVSRRRMQEEMQAVYRKHGTSPFATCLPMLVQMPILFALYRVISAFPGISSGRREALGPITKELATDFEKSTVFGAPLATNFRTAASTNSQIVIGVLVLIMSATMFYTQHQLMRKNMPESALDKSNPMYRTQQIMMYGMPIMYIFMGGVLQVAVLVYWVAGNIWNLCQQAWFIRNNPTPGSQAYKERQKRLREKRERKGLSKEEIEKLESEDAARAGGRVQPLGKERSKKAAAKAANRALHNDADDSDVDEADSDKPEEVRGKDGLTEAERARRRYERRQAERARAKNKAANRKKRVQQNQKKRNF
>NZ_CP040503.1|WP_050758767.1|1356006_1356354_-|membrane-protein-insertion-efficiency-factor-YidD
MSFLTRFLSWPIRAYQRWLSPGFPARCRYAPTCSQYALESLRIHGVLKGTLLGVWRVLRCNPWSKGGVDRVPPKGRWPSKPLDVDELHALYEREDAEAALVGDRRGGEVCSASQA
>NZ_CP040503.1|WP_050758766.1|1356350_1356842_-|hypothetical-protein
MRRSAEFAQAFRGVRGGSARLLVAIGADPSGFDRSGADSISSVTDLPPKVGFVIPRSVGNSVVRHRLCRQLRHLMRTRVQILRPGELVSVRVFPPAKGASSQDLAADLDRCIASVRHKESLREGRREPLDESMEGSIGGKGRNEVLPVSAPTDTGNSSESGER
>NZ_CP040503.1|WP_082902995.1|1356864_1357002_-|50S-ribosomal-protein-L34
MTKRTFQPNNRRRAKVHGFRKRMSTRAGRAILAARRRKGRRSLSA
>NZ_CP040503.1|WP_009198089.1|1357390_1359166_+|chromosomal-replication-initiator-protein-DnaA
MSDGNPAKDAWNAATELLRADGSLSDSQAAFVRMAHPLAWVDEIFMIAVGSEFVKTWIEEHVSETMTSMLSNILGRSVRIVISVDPSVNESQPVGTMASSIAPSAVAPSVLAASEDPLPASSLTMPSLAPSSLASSGVEAEEGDASDSATSDYSQPRYPGMSRSSEHSFSETAKYRESSTDVEAGYARPRPRHLDTSGSGDEPLLPSKPDESHESFTQGIRYVDQTTIAEEALAKRPDTAARSQKARINPRYTFDNFVIGDNNRFATATSLAVAESPGTTYNPLFLYSDSGMGKTHLMHAIGNYALNLFPSIKVRYVSAEEFTNAFINSVRDGHQAEFKNQFRTVDILLIDDIQFIGGRDSTVEEFFHTFNALTNSNKQIVITSDVSPNLLNGFEERMLSRFNSGVTANIDRPNLETRIAILEKKAHSDGFTVPREVNEYIATHMLTNVREMEGALRRVTAFADLSKQTISLGLAEMILKDLIANPDAIEITATLIMSQTAGYFDISIEEMISTDRSRVLVSARQVAMYLCREMTELSLPKIGHLFGKRDHTTVMHACRKIDKQMAERQTTYNQVSELTSRIKQAAQQASL

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Crispr_ID: NZ_CP040503_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040503_16

1443461-1443555

Orphan

Consensus_repeat	Method
GGAGGCGGCAGACAAAAGGGGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040503_16

>merge|NZ_CP040503|16|1443461-1443555|CRISPRCasFinder
GGAGGCGGCAGACAAAAGGGGAGGCAGCCGATGACGGGAGGCGGCGGACAAAAGGGGAGGCAGCCGATGACGGGAGGCGGCGGACAAAAGGGGAG

>NZ_CP040503|16|15|1443461-1443555|CRISPRCasFinder
GGAGGCGGCAGACAAAAGGGGAG	GCAGCCGATGACGGGAGGCGGCGGACAAAAGGGGAGGCAGCCGATGACG
GGAGGCGGCGGACAAAAGGGGAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040503.1\|WP_009197976.1\|1452780_1453080_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_040322982.1\|1451392_1452271_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270324
NZ_CP040503.1\|WP_138587256.1\|1437702_1438551_+\|VTC-domain-containing-protein	unknown	unknown	gnl\|CDD\|143622
NZ_CP040503.1\|WP_009197985.1\|1444310_1444565_+\|glutaredoxin-like-protein-NrdH	unknown	unknown	gnl\|CDD\|131249
NZ_CP040503.1\|WP_009197981.1\|1448836_1449835_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213262
NZ_CP040503.1\|WP_138587135.1\|1448111_1448549_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009197995.1\|1437106_1437688_+\|DUF4956-domain-containing-protein	unknown	unknown	gnl\|CDD\|379819
NZ_CP040503.1\|WP_082903008.1\|1444943_1447181_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|236179
NZ_CP040503.1\|WP_138587134.1\|1433441_1434947_-\|putative-C-S-lyase	unknown	unknown	gnl\|CDD\|224090
NZ_CP040503.1\|WP_009197980.1\|1449831_1450497_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224095
NZ_CP040503.1\|WP_009197984.1\|1444641_1445046_+\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	unknown	unknown	gnl\|CDD\|179603
NZ_CP040503.1\|WP_138587136.1\|1452451_1452784_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_050758813.1\|1441050_1441896_+\|VTC-domain-containing-protein	unknown	unknown	gnl\|CDD\|143622
NZ_CP040503.1\|WP_009198003.1\|1432284_1433445_-\|cystathionine-gamma-synthase	unknown	unknown	gnl\|CDD\|235983
NZ_CP040503.1\|WP_009197993.1\|1438558_1440070_+\|carbohydrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|379528
NZ_CP040503.1\|WP_009197988.1\|1441892_1443458_+\|carbohydrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|379528
NZ_CP040503.1\|WP_009197990.1\|1440451_1441036_+\|DUF4956-domain-containing-protein	unknown	unknown	gnl\|CDD\|379819
NZ_CP040503.1\|WP_009198004.1\|1430825_1432304_+\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|273233
NZ_CP040503.1\|WP_009197979.1\|1450493_1451174_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224095
NZ_CP040503.1\|WP_083786100.1\|1435933_1436533_-\|DUF4190-domain-containing-protein	unknown	unknown	gnl\|CDD\|379388

Protein	Function_ID	Function_description	E-value
NZ_CP040503.1\|WP_138587256.1\|1437702_1438551_+\|VTC-domain-containing-protein	gnl\|CDD\|143622	cd07750, PolyPPase_VTC_like, Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) proteins VTC-2, -3 and- 4, and similar proteins. Saccharomyces cerevisiae VTC-1, -2, -3, and -4 comprise the membrane-integral VTC complex. VTC-2, -3, and -4 contain polyP polymerase domains. For S. cerevisiae VTC4 it has been shown that this domain generates polyP from ATP by a phosphotransfer reaction releasing ADP. This activity is metal ion-dependent. The ATP gamma phosphate may be cleaved and then transferred to an acceptor phosphate to form polyP. PolyP is ubiquitous. In prokaryotes, it is a store of phosphate and energy. In eukaryotes, polyPs have roles in bone calcification, and osmoregulation, and in phosphate transport in the symbiosis of mycorrhizal fungi and plants. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.	3.08588e-29
NZ_CP040503.1\|WP_009197985.1\|1444310_1444565_+\|glutaredoxin-like-protein-NrdH	gnl\|CDD\|131249	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.	1.20254e-33
NZ_CP040503.1\|WP_009197981.1\|1448836_1449835_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213262	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter. OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	2.80175e-126
NZ_CP040503.1\|WP_009197979.1\|1450493_1451174_+\|ABC-transporter-permease	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	2.38389e-47
NZ_CP040503.1\|WP_009197995.1\|1437106_1437688_+\|DUF4956-domain-containing-protein	gnl\|CDD\|379819	pfam16316, DUF4956, Domain of unknown function (DUF4956). This family consists of uncharacterized proteins around 220 residues in length and is mainly found in various Bacteroides species. The function of this protein is unknown.	3.42893e-63
NZ_CP040503.1\|WP_082903008.1\|1444943_1447181_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|236179	PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit alpha; Validated.	0
NZ_CP040503.1\|WP_138587134.1\|1433441_1434947_-\|putative-C-S-lyase	gnl\|CDD\|224090	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism].	3.05261e-167
NZ_CP040503.1\|WP_009197980.1\|1449831_1450497_+\|ABC-transporter-permease-subunit	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	4.28206e-35
NZ_CP040503.1\|WP_009197984.1\|1444641_1445046_+\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	gnl\|CDD\|179603	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI.	1.56283e-82
NZ_CP040503.1\|WP_050758813.1\|1441050_1441896_+\|VTC-domain-containing-protein	gnl\|CDD\|143622	cd07750, PolyPPase_VTC_like, Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) proteins VTC-2, -3 and- 4, and similar proteins. Saccharomyces cerevisiae VTC-1, -2, -3, and -4 comprise the membrane-integral VTC complex. VTC-2, -3, and -4 contain polyP polymerase domains. For S. cerevisiae VTC4 it has been shown that this domain generates polyP from ATP by a phosphotransfer reaction releasing ADP. This activity is metal ion-dependent. The ATP gamma phosphate may be cleaved and then transferred to an acceptor phosphate to form polyP. PolyP is ubiquitous. In prokaryotes, it is a store of phosphate and energy. In eukaryotes, polyPs have roles in bone calcification, and osmoregulation, and in phosphate transport in the symbiosis of mycorrhizal fungi and plants. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.	2.93326e-29
NZ_CP040503.1\|WP_009198003.1\|1432284_1433445_-\|cystathionine-gamma-synthase	gnl\|CDD\|235983	PRK07269, PRK07269, cystathionine gamma-synthase; Reviewed.	4.51686e-166
NZ_CP040503.1\|WP_009197993.1\|1438558_1440070_+\|carbohydrate-binding-domain-containing-protein	gnl\|CDD\|379528	pfam14262, Cthe_2159, Carbohydrate-binding domain-containing protein Cthe_2159. Cthe_2159 from Clostridium thermocellum is the first representative of a novel family of cellulose and/or acid-sugar binding beta-helix proteins that share structural similarities with polysaccharide lyases.	2.20384e-60
NZ_CP040503.1\|WP_009197988.1\|1441892_1443458_+\|carbohydrate-binding-domain-containing-protein	gnl\|CDD\|379528	pfam14262, Cthe_2159, Carbohydrate-binding domain-containing protein Cthe_2159. Cthe_2159 from Clostridium thermocellum is the first representative of a novel family of cellulose and/or acid-sugar binding beta-helix proteins that share structural similarities with polysaccharide lyases.	9.74313e-68
NZ_CP040503.1\|WP_009197990.1\|1440451_1441036_+\|DUF4956-domain-containing-protein	gnl\|CDD\|379819	pfam16316, DUF4956, Domain of unknown function (DUF4956). This family consists of uncharacterized proteins around 220 residues in length and is mainly found in various Bacteroides species. The function of this protein is unknown.	3.51605e-59
NZ_CP040503.1\|WP_009198004.1\|1430825_1432304_+\|L-serine-ammonia-lyase	gnl\|CDD\|273233	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form. This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein. [Energy metabolism, Amino acids and amines, Energy metabolism, Glycolysis/gluconeogenesis].	0
NZ_CP040503.1\|WP_040322982.1\|1451392_1452271_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270324	cd13606, PBP2_ProX_like, Bacterial substrate-binding protein ProX of ABC-type osmoregulated transporter and its related proteins; the type 2 periplasmic-binding protein fold. This group includes periplasmic substrate-binding component of ABC transport systems from gram-negative and -positive bacteria that are involved in uptake of osmoprotectants (also termed compatible solutes) such as betaine, choline, proline betaine, carnitine, and L-proline. To counteract the efflux of water, many microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.41261e-126
NZ_CP040503.1\|WP_083786100.1\|1435933_1436533_-\|DUF4190-domain-containing-protein	gnl\|CDD\|379388	pfam13828, DUF4190, Domain of unknown function (DUF4190). This integral membrane domain is functionally uncharacterized. One of the membrane helices contains two GXXG motifs that are usually associated with dimerization.	1.70501e-15

>NZ_CP040503.1|WP_009197988.1|1441892_1443458_+|carbohydrate-binding-domain-containing-protein
MKKNLRKKFAAVALTAGVALGGCKVGSSQASEVGAASNSIASGSSAGSAKFAATDGDGLKTLDSLRSASEKSVPSGDVYSTTVTAAKATVESVMAENQKPHADSNDAQYDAASATKISLNGASASVEGSGAAASEGKVTISSAGTYVLSGKFTGQILVTAADFDKVKIVLDGAEISSSTDAAIRVKSADEAVVIAAEGTVNSVSDTSKYADSSGPTAAIASSADLTLGGAGALNVTGNGNDGVSSSDGLVILGGKINVKAADDAVRGQDYVVIAGGTLSLQAKGDAVKADNETASGRGYVLMTGGNVTASAGSDAIDATSDVVLAGGSTKVAKSQEGVEGATILLAGGSAAITSSDDGLNATGGDSPWLSVTGGDWTVNAQGDGFDSNGAGYMSGGKMTVWGPTNGGNGAIDAESGLTMAGGALFAAGSQGMDQAPATSSAQASIKVTGQASKGSTFAVFDSNGKQIASYTLVKNAGSFVFSSPDIVKGKKYTIKVDGEQVVTATAGDYDENRMSMPGGRR
>NZ_CP040503.1|WP_050758813.1|1441050_1441896_+|VTC-domain-containing-protein
MRTANVVGESFARPPEISLDELAASASLLTRIDRKYLLQADVAADLVASLAASGARALTIDGQSAFGYLSDYDDTPDFSLYRAAATKRGRRFKLRSRVYLDSGMHFLELKTRSGRGHNVKDRLRLEDVPVGVCAAIRLGRSVKRPDLLVRPEVREWLAERLADRGIAGTRREALRVAASLTPAARSVYTRSTLCLPEGSRLTADRDLVLCAPSGDARVEVPGVVVETKSAGRASAADRWLWSNGHRPLRISKYALGVASIHPELPSNRWNRAMKRLGDERT
>NZ_CP040503.1|WP_009197990.1|1440451_1441036_+|DUF4956-domain-containing-protein
MDVRLFALDIAAICALAFALYYPRHRRKDLAVALVGVNIGVLAVTTALATATVGAGLGLGLFGVLSIIRLRSSELSQVEVAYYFAALAIGLIGGLGSGMPFAAASALIGGIVFALAVVDSRRVMSGSRHMAMVVDRAIGDADELARFIEARTGMAVREVSVVRLDYVNDSTTVDVRCGGKAAVESARPRNLRAA
>NZ_CP040503.1|WP_009197993.1|1438558_1440070_+|carbohydrate-binding-domain-containing-protein
MTGKIQRHAAAVLAVAGLALAGCGDGKSNPSGSKSTSKGSSIVGSGETDGLKILDSLRSVSGKKVPTGGDIYASSVKPNGATPEAVMAENQKPHADSNDADYKESSATTIQLDGTPKVSGKGASATQDAVTIKQDGAYVLSGSFNGTVTVEAPDTAKVKIVLKNANISSSKDSAIRVKTADEAVVIAAEGTSNSLSDTSSYAGNAKGPSAALASSADLTVGGKGELKVTGNANDGISSSDGLVVTGGKISVSAPDDAVRGQDYVVIAGGTLDLNGKGNGIKSENETKSGRGYVLVTGGDLTINGGSSNAVNAKTEIVIAGGNIKIAGSKEGIEAAHVLLAGGKADVKTTDDGINATGVRPWLSVSGGEWRLDTGGDGFDSNGAAYIGGGKMTIYGPTDTRAASLDAETGLEIDGGTLFAAGPSGMDETPSSGSSQTAIKVDAAVKAQTAVTVVESGGKELAKHTPTKDVSSIFFSSADIAKGKEYKIVVDGHEIAKAKAGEFK
>NZ_CP040503.1|WP_138587256.1|1437702_1438551_+|VTC-domain-containing-protein
MAGEAEVKSSSKRDGFELLGLPEISLRELSARAELLKRTDRKYLVPDRTVVEMVGFLCDIGACALTIDGLQTFGYLSDYYDTLDFALYRAAATKRRRRFKLRSRVYLDSGLHFMELKTRSGRGQNVKDRLRLEDVRSKDYFYRGDPAEPLKRSEVLRWAAKLLVRRGVTATHREGFRTLASLVPSSRSYYRRSTLCLPDDSRLTIDQGLVLAGAGEVSGFEFPEVVVETKSSGRTSDVDRWLWSRGIRPSRVSKYAIGTAIVHPELPANRWHSTMTKLGIRR
>NZ_CP040503.1|WP_009197995.1|1437106_1437688_+|DUF4956-domain-containing-protein
MNYPLFAVDLTAIGALAFALYYPRHRRKDLAVALLGVNIGVFAVTTALSTATVGAGLGLGLFGVLSIIRLRSTELSQVEVAYYFAALAIGLIGGMGEGMSLGIAALLIAAIILALAVADSKLVMTGSSHMTLVVDRALSNPEELARYIERRTDMKVREVSIVKLDYVNDSTMVDVRCSKGRAQIRETKSLRAA
>NZ_CP040503.1|WP_083786100.1|1435933_1436533_-|DUF4190-domain-containing-protein
MVSQLCLCTPSRYYELALRGRSRRRASGAIRIAARPETSRERGAMSLPNENQQQGSLSNENSQQVSSPNENHQADSQGLPQPQTPNFPQNQGPFPQGQVPPPAAYGGRQPVASGMNPLAIASLACSLLGIVTALLGIASLALLLPIVGVILGHVALNDIRKTGKGGKPEAIAGTIIGYIAAILAVLVITILKGIADILG
>NZ_CP040503.1|WP_138587134.1|1433441_1434947_-|putative-C-S-lyase
MSKPTGTAFRAAHCVRRRRLKPHRCFDDREKGVQVTKEFDFDSFIDRENTESLKWDARERRGYPETVLPMWVADMDHRTAPAVVRALHERVAHGIFGYTSPDASYFEAVASWQSRRFGWEVDPMSIVAAGGVIPALTHAVRAFTEPGDGVVIEEPVYYPFRSIVENNGRTAVNAPLVRNGQGRYIRDLAVLEATFVASGARTMILCNPHNPVGRVWTREELLGLADLAAKLDVLVLADEIHADLTYPGIRTTPFSSLPGMSNRTVTFTSPSKSFNLAGLQLANIVVPDRKRRQDFIRESNAAGYSEPNALGLAACRAAYNEGEEWLDAFREHMAENLEFLAAALEEIDGIELVEPEGTYLPWLDCRKLIHNLGIEAGELDEFMVNEADLWLDDGAIFGDEGLGYTRINIACPRSTLKEAVDRLRRAVEAQSVSDEPTSAPATATFETASIDSEASAGSEAPDDSGATADSASPTDAEAPGDPQEASQTRQDEDAERAERDS
>NZ_CP040503.1|WP_009198003.1|1432284_1433445_-|cystathionine-gamma-synthase
MSAHAEPSRREAEPSRREKAPRRAETVLAHIGTSSDPGTGALTAPIYLSTAYAHPGLGASTGYDYTRTANPTRDVLQSALAQIEGGTAGFATSSGMAAAELVVSLAAPGSRIVAAEDIYGGTYRYFDELARTGVYDVDFAIGEQGLCAALSKPADLVFIETPTNPMMVEIDIERIVDMGRRAGAIVAVDNTFYTPIFQRPLESGADVVLHSATKYLGGHNDVLAGAVIVSREDLAEKLAARLNMTGATLGPFDSWLLMRGMKTLALRMERHQDNARKVAAALEESPLIDRVHYTGRGGMLSFVPNESVDMPKVLESVRLFTFAESLGGVESLITCPAVQTHADVPRERRMGYGLTDDLLRLSVGLEHWRDLVDDLLGALEVSIRRR
>NZ_CP040503.1|WP_009198004.1|1430825_1432304_+|L-serine-ammonia-lyase
MAPLHGLPDGPAAVVSGQISAEEASRPLSVRDMFRVGIGPSSSHTVGPMRAGLHFAEHLRIPARAKLGRIVVELMGSLGATGKGHSTDRAVMLGLAGHSPESVPIDVVDAIMGDVERTGVLSVAGAGEVGFAAERDILFLPGKILPFHVNSLTVRALAEDGAVLGERTYYSVGGGFVMEECGDAERASETRPLAAAWDCPAASPPPYPYSSAAQLLGHCEREGLRISDVVKANELALMGEEELLAALDGIVAAMRESIEAGCTTTGLLPGILKVRRRAPRLLADLRARQASDDGDELAGMDWINLYALAVNEENAAGHRVVTAPTNGAAGVIPAVLAYYIRRKGGSAECVRRFLLTASAVGGLIKTNASIAGAEVGCQGEIGSACAMAAAGLAEALGGQPQQVENAAEIAMEHCLGLTCDPVGGLVQIPCIERNAIAAVKAINAARMALWGDGRHAVSFDAVIETMRQTGEDMLSKYKETSRGGLAVNVVEC
>NZ_CP040503.1|WP_009197985.1|1444310_1444565_+|glutaredoxin-like-protein-NrdH
MSVTVYTKPSCVQCNATKRALAKAGLAYREVDLTQDAEALETVKAMGYQSAPVVFAEGDHWSGFRPDKIKALTAAARESAAVTA
>NZ_CP040503.1|WP_009197984.1|1444641_1445046_+|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI
MAKLVYFSSATNNTERFVKKLGMPACRIPLRPKEGPLRVDEEYVLVVPTYGGGNAKGAVPKQVIKFLNDEHNRSLIRGVISGGNMNFGAAYGLAGDIVAAKCHVPHMYRFELLGTPLDVARVREGLEKFWQQAR
>NZ_CP040503.1|WP_082903008.1|1444943_1447181_+|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha
MPRAAHVQIRIARDALGRGPGSRRFGEVLAASTLTDTGEESYEDPNLDYHALNAKLNLYDANGLIQFDADRAAARQYFLQHVNKNTVYFHDLEEKMEYLVKEGYYEKEVLDQYPFDFVKSLYKAAYAKKFRFPTFLGAFKYYTSYTLKTFDGTRYLERYEDRVCMVALTLARGDQDLAVDLMEEIISGRFQPATPTFLNAGKAARGELVSCFLLRIEDNMESIARGINSALQLSKRGGGVALNLSNLRELGAPIKRIQNQSSGVNPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLGVVIPDVTFELAKNNEDMYLFSPYDVERVYGVPFTEISVSEKYREMVDDKRIRKSKINARAFFQTLSEIQFESGYPYIVFEDTVNAANPIKGKVTMSNLCSEILQVSEASEYNPDLSYAHVGKDISCNLGSMNIAKAMDSPDLGKTVETAVRALTAVSDMTDIRSVPSIERGNAMSHSIGLGQMNLHGYLGRERVFYGSEEGLDFTNMYFYTVLFHAIRASMEIARERGERFAGFEDSTYATGEFFDKYVEGAWEPTTPKVRELFANVHIPTSEDWAALREDVRRYGMYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRKEGKIGRVYYPAPYMTNDNLEYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFYPDTVTTRDVNRNYIYAWRKGIKTLYYMRIRQQALEGTEVAGCVSCML
>NZ_CP040503.1|WP_138587135.1|1448111_1448549_+|hypothetical-protein
MAAVVVDDLEYRKLYDRLDRVASTAHEQFNLDLDVEFHAHDIMQGRKSWGCFRGQVHEAVVLYRAAARAVRESGALLTIEGSMNLNRRVRGVQIELLGQFFANSVRSKIGNGCPKQARGLAGPRQSTPRPAVRRASSLVRPFILM
>NZ_CP040503.1|WP_009197981.1|1448836_1449835_+|ATP-binding-cassette-domain-containing-protein
MIEFESVGKTYPGGAVAVESFTYTVPKHRTVVLVGSSGSGKTTLLRMVNRMVDPTSGRVLIDGVDVREADPVKLRRSIGYVLQDGGLLPHRTVADNVATVPILNGTPRREARSAALELLERVGLDPELGARYPAQLSGGQRQRVGVARALAAEPEILLMDEPFGAVDPIVRRELQDELVRLQGEIGKTVVFVTHDVEEAFRLCDEVVVLGEGGKIAQSGTPEEILAAPANDFVRTFVGGTKSNQTLRVRQVAGRSVAVGEDGRQVGVIEGLDGLVGGKGARDDDAREQDSRGREAQPRLPHALEAARSSLRKAKARWRLGGKSGDSAEGGPV
>NZ_CP040503.1|WP_009197980.1|1449831_1450497_+|ABC-transporter-permease-subunit
MSWLGENWRWVGELLRAHLFIALPATALAVLVSVPIGRFAHRFPKVGGVILSGATLTYAIPSLPLLVAVPLVIGTPLRSPLTIIAALGLYGMALLVRTASDAFSSVDQTVIDGATAVGHSRRTLLWTVELPLAVPVLVSGIRVVAVSTVGLVTIGALVGIPSVGTLLTDGFQRGITAEVVTGVVATVALALAVDGLVVLLGRLLTPWTRAGKAPGAKGEQA
>NZ_CP040503.1|WP_009197979.1|1450493_1451174_+|ABC-transporter-permease
MNYFLSALRWLADSANWRGPSGIGARLLEHMILTLGVVGIAAAIALPIGIVVGHTRRGAGFVGAVVGSARSIPTLGLLTIFGLIFGIGLDAPIIALVILAIPSLLAGAYSGIQAIDPAVPAAATAIGMSPAQVVFRVELPLALPVIVGGLRATVLQVVSTATLAAYVADWGLGRFLFAGLRSHNYPLMLGGSLAVIALAIVCELLLSALQRATARRAAPAHAASKE
>NZ_CP040503.1|WP_040322982.1|1451392_1452271_+|ABC-transporter-substrate-binding-protein
MLGAVALAVGCSNADPLRRSDGKDRAGETIVVGSQDYYSNEIIAEIYAQALEAKGYKIERQMKIGQREVYMPEVRSGSIDVFPEYTGNLLQYIDSKASVTAPEPVYRALEKKLPRELTVLNQAPAADQDSYVVTAKFASENGIRTIGDLAKVKGRLVLGGNSELESRPYGPKGLKSAYGVDVSFTPIEDSGGPLTIKSLREGRAQVVDLYSGNPELSTGEFVVLQDPKNLFLSSHVVPLVSSKLPVRAARILDRVSAKLTSEDLRAMGARSVKSGQPASKIAKDWLKGKGLG
>NZ_CP040503.1|WP_138587136.1|1452451_1452784_+|hypothetical-protein
MGTQFALTLGDQTEAARSVNESAADFADLLKRFGEELEGGLSSLAFSAIATFGEGIGKWFEAAKPFPEGLVNYSKALAAVDSTTAEADRKSTQEFCAVYEEIAALMGGDE
>NZ_CP040503.1|WP_009197976.1|1452780_1453080_+|hypothetical-protein
MSERTFKYSESSLVELTTMVENMSANVEDLISTARKKTDGQIGGWSRESSSRQAQIAFDQRLGNRTESLTQALDEAANALGDIKDLAHNTEVRNVAVMD

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Crispr_ID: NZ_CP040503_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040503_17

1549249-1549391

Orphan

Consensus_repeat	Method
GGGGCGGCGTATGAACGGCGGGCGGTTGCCCGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040503_17

>merge|NZ_CP040503|17|1549249-1549391|CRISPRCasFinder
GGGGCGGCGTGCGGACGGTGGATGGTTGGCCGTGTGGACGGCGGGGGCGGCGTATGAACGGCGGGCGGTTGCCCGTGTGGATGACGGGGCGGTTGCCCGTGTGGACAGCGGGGCGGTGTATGAACGGCGGGCGGTTGCCCGTG

>NZ_CP040503|17|16|1549249-1549391|CRISPRCasFinder
GGGGCGGCGTGCGGACGGTGGATGGTTGGCCGTG	TGGACGGCGGGGGCGGCGTATGAACGGCGGGCGGTTGCCCGTGTGGATGACGGGGCGGTTGCCCGTGTGGACAGC
GGGGCGGTGTATGAACGGCGGGCGGTTGCCCGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040503.1\|WP_009197876.1\|1550500_1550773_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_050758755.1\|1534236_1535052_-\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|237171
NZ_CP040503.1\|WP_009197882.1\|1544001_1545531_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009197867.1\|1556819_1557701_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009197870.1\|1553933_1554320_-\|phage-holin-family-protein	unknown	unknown	gnl\|CDD\|377198
NZ_CP040503.1\|WP_009197873.1\|1552233_1552572_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_138587143.1\|1535319_1538115_-\|flippase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|377103
NZ_CP040503.1\|WP_009197881.1\|1545527_1546181_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_050758756.1\|1532116_1533871_-\|DUF2079-domain-containing-protein	unknown	unknown	gnl\|CDD\|370724
NZ_CP040503.1\|WP_009197883.1\|1543677_1543914_-\|heavy-metal-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|238219
NZ_CP040503.1\|WP_009197866.1\|1557977_1558985_+\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP040503.1\|WP_009197869.1\|1554543_1555599_+\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|179559
NZ_CP040503.1\|WP_083786093.1\|1555754_1556573_-\|YwiC-like-family-protein	unknown	unknown	gnl\|CDD\|379525
NZ_CP040503.1\|WP_009197872.1\|1552917_1553712_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NZ_CP040503.1\|WP_040322437.1\|1550760_1551408_+\|DUF4853-domain-containing-protein	unknown	unknown	gnl\|CDD\|374742
NZ_CP040503.1\|WP_009197885.1\|1541156_1543472_-\|cadmium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783
NZ_CP040503.1\|WP_138587260.1\|1546366_1546972_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP040503.1\|WP_009197878.1\|1547670_1549224_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|236452
NZ_CP040503.1\|WP_138587144.1\|1538530_1540846_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223021
NZ_CP040503.1\|WP_009197877.1\|1549440_1550358_-\|fructosamine-kinase	unknown	unknown	gnl\|CDD\|225547

Protein	Function_ID	Function_description	E-value
NZ_CP040503.1\|WP_009197870.1\|1553933_1554320_-\|phage-holin-family-protein	gnl\|CDD\|377198	pfam04020, Phage_holin_4_2, Mycobacterial 4 TMS phage holin, superfamily IV. These proteins are predicted transmembrane proteins with probably four transmembrane spans. The 1.E.40 is represented by the mycobacterial 4 phage holin, but it also contains many cyanobacterial. proteobacterial and firmicute proteins. Holins are encoded within the genomes of Gram-positive and Gram-negative bacteria as well as in those of the bacteriophage of these organisms. The primary function of holins appears to be transport of murein hydrolases across the cytoplasmic membrane to the cell wall where these enzymes hydrolyze the cell wall polymer as a prelude to cell lysis. When chromosomally encoded the enzymes are therefore autolysins. Holins may also facilitate leakage of electrolytes and nutrients from the cell cytoplasm, thereby promoting cell death. Some may catalyze export of nucleases.	3.22634e-18
NZ_CP040503.1\|WP_050758755.1\|1534236_1535052_-\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	4.45023e-05
NZ_CP040503.1\|WP_009197869.1\|1554543_1555599_+\|histidinol-phosphate-transaminase	gnl\|CDD\|179559	PRK03321, PRK03321, putative aminotransferase; Provisional.	6.13825e-137
NZ_CP040503.1\|WP_009197872.1\|1552917_1553712_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	7.00758e-45
NZ_CP040503.1\|WP_138587143.1\|1535319_1538115_-\|flippase-like-domain-containing-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	5.97768e-30
NZ_CP040503.1\|WP_138587144.1\|1538530_1540846_-\|hypothetical-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	1.81087e-15
NZ_CP040503.1\|WP_050758756.1\|1532116_1533871_-\|DUF2079-domain-containing-protein	gnl\|CDD\|370724	pfam09852, DUF2079, Predicted membrane protein (DUF2079). This domain, found in various hypothetical prokaryotic proteins, has no known function.	1.60142e-36
NZ_CP040503.1\|WP_009197883.1\|1543677_1543914_-\|heavy-metal-associated-domain-containing-protein	gnl\|CDD\|238219	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.	4.86611e-12
NZ_CP040503.1\|WP_009197866.1\|1557977_1558985_+\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	4.0738e-79
NZ_CP040503.1\|WP_083786093.1\|1555754_1556573_-\|YwiC-like-family-protein	gnl\|CDD\|379525	pfam14256, YwiC, YwiC-like protein. The YwiC-like protein family includes the B. subtilis YwiC protein, which is functionally uncharacterized. This domain family is found in bacteria, and is approximately 130 amino acids in length. There is a single completely conserved residue G that may be functionally important.	2.53643e-30
NZ_CP040503.1\|WP_009197885.1\|1541156_1543472_-\|cadmium-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP040503.1\|WP_138587260.1\|1546366_1546972_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	6.16602e-42
NZ_CP040503.1\|WP_009197878.1\|1547670_1549224_-\|adenylosuccinate-lyase	gnl\|CDD\|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
NZ_CP040503.1\|WP_040322437.1\|1550760_1551408_+\|DUF4853-domain-containing-protein	gnl\|CDD\|374742	pfam16708, LppA, Lipoprotein confined to pathogenic Mycobacterium. This is a family of lipoproteins found only in pathogenic mycobacteria. These pathogenic lipoproteins may play a role in host-pathogen interactions. Lipoproteins localized to the cell-envelope of pathogenic bacteria are major determinants of virulence. The proteins are localized to the cell-surface via an N-terminal lipidation carried out by a transferase - pro-lipoprotein diacylglyceryl transferase Lgt - which attaches a diacylglyceride molecule to a sulfur atom from a crucial cysteine, and a consecutively acting lipoprotein signal peptidase LspA that cleaves the signal peptide just before the modified cysteine. When the peptidase is inactivated the pathogen has difficulty in replicating inside macrophages.	2.88311e-06
NZ_CP040503.1\|WP_009197877.1\|1549440_1550358_-\|fructosamine-kinase	gnl\|CDD\|225547	COG3001, COG3001, Uncharacterized protein conserved in bacteria [Function unknown].	7.0276e-36

>NZ_CP040503.1|WP_009197878.1|1547670_1549224_-|adenylosuccinate-lyase
MITLGPLDGRYRETVAPLTAFLSEAALNRARIAVEVEWLIFLSQNEVFPGAPVVSEADVAYLRAIPQKFGEAEIAEHAAIEAETKHDVKAVEYLIKRRMEAAPDVVGPNTALPSLTEMVHALCTSEDVNNLAYALCIKGAVTDVWFPAALKLHDALAELAHAHADLPMLSRTHGQTATPTTVGKEMAVFAHRLSRQLRRIASADYLGKINGATGTFGAHVAALPDVDWPALSRAFVEGLGLVWNPLTTQIEPHDWQADLFSDVVHANRIAHNLATDMWTYISLDYFHQNLAAQGTTGSSTMPHKVNPIRFENAEANLEVSSALFETLAETLVTSRLQRDLTDSTTQRNIGVAFGHSLLALDNLVRGLAGVDPNPQRLAEDLDASWEVLGEPIQQAMRAAGLGGATGMGNPYERLKELTRGRKVTAEDMREAIASLGMPDDVAARLAALTPAGYTGLAARLVGFLDGAAYFSGAGHFAGATQPHPGDAGHPDGAAQPSQAGHAAPAERGEASEPDGHL
>NZ_CP040503.1|WP_138587260.1|1546366_1546972_-|DedA-family-protein
MNDLGGLGAASLIALENLFPPLPSEVILPLAGFTAGTGSANFTLLGAILWCTAGSVVGAWALYGVGALLGRERTRKLMGKLPLVKTSDIEKTEAFFDRRGTWTVFFGRMIPIFRSLISIPAGVTRMGFWKFTALTTAGSAVWNTILIWAGHALGSNWTKVEGYVGILTKVTIVVCLLGGALWVALRIRSNRRKREAVPAEN
>NZ_CP040503.1|WP_009197881.1|1545527_1546181_-|hypothetical-protein
MDENYEDYRIDVGYRMAIAPWRARSYIEGGKEDFCGFAIDAAQVSGVTEVGDFIDLFCGAIAPAQFSPSEPIRILEVPANPFVQASRAVGALHPDALPVAILKYLAQIKVLHALQGQGAPLAYALSVFRGDLENTEMIPFPDECPPMLEHIAPEDWQEELEYFPATKSPNGLGASWTDEDRTGRTEPLNRGRRTANLDKAGETVKIKNTNPTSEGAQ
>NZ_CP040503.1|WP_009197882.1|1544001_1545531_-|hypothetical-protein
MSVVYQLAVTPWQANRYLSEGAEDFCGFAVDAASVEDVRDAGCLRELLLCKVNKANFPADEPLHILKAPIDPFVHTRRAVGPLHPDAFLGGVTEDAPYDPSGVVSAGGATAELLWIEPGRLTRGSELWRFRPGDPNPELAAVYHGVAWGWENARTGEFVAAKPSKLMGPVVKREWGTAAVDVETDGGKPTAVTLVSPQKPPESGFERLSTGLWAKRIEYRDGLNVYENYLSALARGVPVRVTRLANSPNGMEALGFALLVDAPYAIGNRVLRICPGAFFCVMPMDEMEKAVAREGRPETWDVSTFPAVTTLSLRERSNYDVDSLLKDIHALIENVAPEGWRTCTLIVQIVGGQFRYGGNFFIPASADPFEAAPPSGAGSEASSSEDRSASADDGAHRGPGSRRARSGRPRRPVYGGVVEEISLLPSAVLEYLGQIKKLAATPERGAPLAFTLQASASGETKLNVTYEETPPLVESITPQAWAAEMEAFPRPNPPEWASRLTDPGDDGGL
>NZ_CP040503.1|WP_009197883.1|1543677_1543914_-|heavy-metal-associated-domain-containing-protein
MTFDRTIELGVTGMTCEHCVSHVTEELKALPDVVNVSVTLAKGGTSKVLVYTNADIPDATLKEAIDEAGGYEVESIVR
>NZ_CP040503.1|WP_009197885.1|1541156_1543472_-|cadmium-translocating-P-type-ATPase
MQPGADPARSSADPARPQTEVELAVTGMTCASCVARVEKKLNKIPGVTAIVNLATEKAHVEWADAAGPSDADLVGTVEKAGYGATVLRRITTDDAGERTVQASEAARGAEEAAARAASARVADLRRRFWAALVLSTPIVAVSMAPAWQFPGWQWAVGALSLPVAFWCGWPFLKAAWRAGRHGSTTMDTLVALGILASMGWSAWALLWGGAGRIGYTMGMTGIHGLGHSGTPHLYFESAAFIVTFLLLGRWLESRSRRSAGDALRSLLDLAPTTATRVRREGGGVVEETIDAAELEVGDEFLVRPGETVATDGLVVEGESAVDASLLTGESIPVDVGPGSKLTGGAVNTFGALTVRAVRVGEETTLARMGRLLTEAQTGKAPVQRLADKVSAVFVPAVIAIAAIAFATRLALGNPLEMALASAITVLVVACPCALGLATPTALLVGSGRASRLGILIKGPETLESAHGVQTIVLDKTGTLTTGTMAVSAVRPAEGVGERELLAAAAGVERGSEHPIAKAIVALAHERGIEPKAVESVAARAGNGVEGILDGRRIAAGTARWLAEEGVEGASGLGGEPGASVVGVALEGSLLGAFDIRDAVRPESAAAVAELKSLGLHPVLATGDNEAAASAVAAEVGIDDVRAGILPEGKVGIVEELRAAGQKVAMVGDGVNDAAALAGADLSIAMGSGADVAKEAADITVVSSDIRSVGAAIRISAQTLRIIKENLAWAFGYNVVAIPVAVAGFIVPGIAAAAMASSSVIVVANSLRLRRA
>NZ_CP040503.1|WP_138587144.1|1538530_1540846_-|hypothetical-protein
MAHSSRKPMGTRTLIAGVIIILVTALTAFITPSNADVNAAIAISSPTLTRTDANGDPLTTAEASHPMLVGDHASLSFAWDAAKANIAPGQSMKIGIPASFRTLEPGSQADLTIDAAGKQTAIGQCKLGRNEVDCAFDKTVDSLKARGYAAPKGKVSLRLTALAPTASPVAFTINGGQYKLAIPGGSVRERSKGYNPHTFAKVTPALTSESRSVFWTVSFGADYVAERLRETGQHMRPDGATHSTVTITDTIGPGQKFADPSKWALYHRGSAGDKEVRDVRVTGGAGTDYTTAYGDFDMSVSINGSTATVSITGPWRGQTNYGIAYPTVPDKGRITPNFAYVNTAGLGKTKIVKAAAAKYTDPFASSGLVDAQHGSFTVTSRATGPHAEAIPRRVAFPVTARYELPAGTTASDYPSWNPPGTLAADKRSGTFSLAAGIGQKVDAGSKFPAGTKITVTQNSSAALGAPEGVRWGDPSYTVDGDKGNSFVVKANTVHGVAVSTEVLSPPSDVKPTPKPSPSTPAPSPSASAPEPNPSSPTPNPSTSAPEPGPSTPTPSPSATSLASDPTTPPEPTPTAPSSHPTPSPTETMPSKPVETPKPSSEPTGTAEPSPSPTTASPTEEPSPTPSESPTASPSESPSPSESTEPSPTDAPSAKASPSAAPSSPSVVVPPISPSAPAATPSPTDSQSPSGDPGAANPNGGQPSGKGKPRVRRPGSSINSPIVGTPVALPTMARAAEERPLIKTGLDMGTGVVFSVSLSLVGTGLVIRRYFS
>NZ_CP040503.1|WP_138587143.1|1535319_1538115_-|flippase-like-domain-containing-protein
MDDNLTNTTPRRPVLLVDEETRWLRRPRDLVSAVITLLAIVGVMVVTVYGSSTALAVIRDVRTATSGIITSILFMPVNALEGLIGFFLPAALIIDMAWHRRWRTLATGALAVASAAAFTYGLLWLFSRYFPLSPITGQLSDSLVEQTYFKLIPYVAVVSAILTVAGSGKRAKTTRWGWPLLSLVLVLSVLQGNQTLPGALITALLGVLCGLMWRYIAGDVPDRATGADLVKLVRRAGVDAQLVVRIDRLPDDAALTAWLAPAHGDLGHIDRYGIDQIHRILQKAGESFEGAPPKPKGAKAASPESEQQADDPQGADDPRRADGPRRADDRLESEENRQTPEPAPGFGPISRSAKAASQRLRPADDVDPLALRNELLASYHPPLSGEASRNYIVVDSSGNPHHASFFDADQQIVGVLQSSWQRLVLTTTARQAEKTIDGAMDRFALMELASASAGLAPDRGLAVAGSDSSKVVILEVDGSTALSDIEPNEIPDEALDDVWDILQDAHRRGFSHGDVRAGVTALKGGRARLLHWENGRLAASEMERRIDMAQAMAMMAGIVGVERAIASASRCLPRDQIVSLAPILQKAIVPSETMAKFTEKKQLERLRDRLTEQVPEVAEVTPTQLYRFSVKTVVTVSLGLAAVYILVVSVNFNELRSTLASANPLWMLFAFVAGLFTYIGAAMTLRAYTSEPLNAKDTVMVQVAASLVTLVAPAGIGPAALNLRFLQKRRVSTPVALATVTLVQLAQFVTTIILLIGISLATGKIGSLSMPSGAVIVAIAIGVLAVAALFLVKPLRRWAAKKVRPTIDQVWPRLVWLATHPSRIAYGFAGSTVQTIAFVACFGGSLAAFGYNLPIVTLALAYLLSNSLGSVVPSPGGIGPVETALTTGLTVAGVPTSIAVSTAVLYRLLTFWGRVPLGWLALRMITKREVI
>NZ_CP040503.1|WP_050758755.1|1534236_1535052_-|LPXTG-cell-wall-anchor-domain-containing-protein
MTQSHSRSKRVLPRHIIATLAISGASVAGMAAPSFAGETPQTPDAHGTAGAAVNEALAKTQLANLPQADDGTPRDGEDKRTPPGDGEADKGGNENGNGGQDNNGQGGNGQAGDNGNDGNGGGQAGDNGNDGNGGGQAGDNGQGDNSTPSPSTPSGQPSSGSPSAQDPKSPGDPSQSGTSSPSDNKVPGLNTGTPQKTGAENGGDHGVAPNQQDPGASVPVVPSPRVGSGQKGSVSGTQLPRTGASVTTLAAVAVAAAGTGGVLVARRRRAY
>NZ_CP040503.1|WP_050758756.1|1532116_1533871_-|DUF2079-domain-containing-protein
MTSSEETSPESLDPIAGPSPEAVPGAEPESNLQTGSDRETEPARQTGSGQETQPDHQTDSDPAAEPNLESHPDPEAEPDAESCAGPESRVPQQSAGPSKDGAPVAAVAPSRAVAHILAWSIAALSAFAYVLYSQLQWRTFATPSWDLGIFTELAKQYSQFDAPTVDIKGPEFNLLGDHFHPLLVLLGPVYKLFPSGLTLLVLQDLLFALGSVPITLLAVKRLGKSLGAVVGIGYAMSWGLWSAVESQFHEIAFAVPLLAYGLARWLDTKGNSRSALVAVGLLVFVKEDLGLTACAVGLVFLWQAWGAAARTDDRFAIRSRASLKKALSSPQGKAGARLAAWGLAWTLLAILVILPIFNPEGGWEYTNRLAQNDAVASNFLLRFFLPATKYATLLLLALATGLVGLVSPYVWIMLPTLFWRFAGNVEHYWGWHWHYSAILVPIAAIALIDACSRWRGTYRARAAAACVALASNVGVAWFGPIGQLVDGRTPFSVTEEQARAGRDAVEALGTGHNVVANLPMLAYSVPGNRVYWEGTYGKAKIDAVIFAPSNSTGGLPADVWAEQKFGGRWKLVYSRLNYQVAVRQ
>NZ_CP040503.1|WP_009197877.1|1549440_1550358_-|fructosamine-kinase
MNASFTKRASKQATAAEAAGLADLARAARAGGAPAVRLLRATATSLDTARLSAVTASPAAAEEFGRRLAATHAFCPEGSRVFGQAPAGLVNADGSASDGVMGAAALPLVGPGLSRRFGEFYAQDRLLPYLADARRNGSIGAEGTAVLERLAERLNDGEFDAPQPASVGADAALLHGDLWAGNVMWASRESAEIAAEGLAAADEAAESFGVAEKTGSMRNRRDDVVGVLIDPACHGGHAESDLAQLTVFGAPFIDRIYSAYNEASPLADGWRERVGLHRLHILIVHAALFGGGYGRQTVDEARRYI
>NZ_CP040503.1|WP_009197876.1|1550500_1550773_+|hypothetical-protein
MNPISTRHQGEIAAEAFVDLASLEAAAQHSKEASGSGALGKDPMDADSGFQQVTPEDSKTRVTGHSGYLVDGSKAQEQIAKVIVAKGWTL
>NZ_CP040503.1|WP_040322437.1|1550760_1551408_+|DUF4853-domain-containing-protein
MDAVKAGRRIRFALLAVVLGLAGCSSDATPSTEPTAGKKADPFDFNSRPYYYGKKPFKDRVDIRTADADLRAALGRVRGRIDAEFGKQDWTWIKEPVNVFYGCADGKNEGGEYNNAQGKTYGIPMDKFSRIHKIFKEEVEPLGFTTVVEISDKGDKSFDYYNEGDGGYINMGMTREEVFGMWYTTGCRPAPAGSTPDPDGRLDTPTPSESATASP
>NZ_CP040503.1|WP_009197873.1|1552233_1552572_+|hypothetical-protein
MRYTTGRRPFPKDASAANVGRAEAEASGARGSVGADADGVDALNSGRPGGTDWRLGNAESFGPSIGEPKVGRHSEAASPDGKPTSTSNAPNATEQERDAGDGWTSRWPMADD
>NZ_CP040503.1|WP_009197872.1|1552917_1553712_-|MerR-family-transcriptional-regulator
MGENMQELTVGQVADLVGISVRTLHHWDEIGLVTPSWRSWSGYRLYTREDVERVQRVCLYRETGMALARIAELLDDPGLDELAHLARQRELLLERISHLRQKVSAVDQIMETMKMGTNLDPAQKAEHFGGWDPAWQEEAQAKWGDTPEWRQSEAVKAKMTPQDWFRVGRDTQALEQSLGQAKRDGVKPGSDRANELAEAHRASLGTWFDVTHSKHVLIARGYVMDDRFRQYYDEIEPGLTDWLKSIIDENARANGVDPTTATWQ
>NZ_CP040503.1|WP_009197870.1|1553933_1554320_-|phage-holin-family-protein
MRYLVRAAINALGLWLCVLFVPGISLHGLGNNRDIALYLLAGGAVLGVVNCLVRPILVILSIPLYILTLGLFFLIVNAAMLRLTATLTAGFDIGVTVTTWVAAIMGGILLSLFNTFTDAMLPEEYRRR
>NZ_CP040503.1|WP_009197869.1|1554543_1555599_+|histidinol-phosphate-transaminase
MSKQQWFRPEILGLPAYVPGKKGANTDVVKLSSNENPFPALPAVQAAVSAAVGDLNRYPDMFATGLVHDISWFHKWVDDGVVVGNGSTSLIEKILQAVVTPGGEVVLPWRSFEAYPIAVQAAGGAAVKVPLNADGSHNLPGLLSAVTERTRALLLCSPNNPTGVALKHTDLAAFLAKVPERVPVLLDEAYIDFVDMDDAVRSDELLREHPNLIVLRTFSKAYGLAGIRVGYGLGHPEMIAGLRAIGTPFGVNALAQIAASAALHSQEEVRARCGVIVQERKNLVAALAAHDIAVPASQANFVWLAGFGEALENACLDEGVTVRRFGQEGVRVSVGETEGSLRLLRAVASIL
>NZ_CP040503.1|WP_083786093.1|1555754_1556573_-|YwiC-like-family-protein
MTSTTVGKSSPGASRNKRRKRRNARLWIPQYHGAWAMVTIPPLVGVVEGGFRPVEIVVFALWFVGYFLFYSATVWLKSRCKKRYFPPVRLYGLIVAALGLASLVGAPYLWRWALVFSPLVAIAAWEAWKRDERSLISGLDTIAAACLMIPVMFDIAGDGAPGFAASPRAWLLTALFFGYFAGTLFYVKTNIRERDSNVYLAASVLWHASWAAAAFVLAWRGEVGWIHAAVWLAIAIRAVVVPLLARAGRPVSVKAIGFGEVFTSLAFVLTVF
>NZ_CP040503.1|WP_009197867.1|1556819_1557701_-|hypothetical-protein
MSSAPDNPWLDQGSSQWPEQPPESRRPLYFLVFAAGVLLLTLMAVFYIKVIRDGRDAADPDKDPKATSTTADAPSTAKTTTLNANGSLEEAREAVSQLREKSSCTAKDDAKSLTVFIQAAKKEDKLNKERKLATSTLAALSKNCGAEYTVDLTKQMKKSTSEVSDLVSDRSWWHLASPAPSGAKDVTEFTTGKHNIRCKFDDDDESVSCSIYIYDYPSPDGCENKTATYHLSQAKEATADCNSALNSSIQVAYGSTVSHNGIWCSISQEQGITCTSELSGKGFQLKRAAARLF
>NZ_CP040503.1|WP_009197866.1|1557977_1558985_+|MoxR-family-ATPase
MAMKEMASGDISAADLARSADLLERIHGTFRGRVVGQDALYTALVTSLLARGHVLLESVPGLAKTTAATTIASAMSGTFSRIQCTPDLMPNDIVGTQMYSYETGTFTTQLGPVHANVVLLDEINRSSAKTQSAMLEAMQEGQTSIGGAVYELPRPFTVMATQNPIEEEGTYVLPEAQMDRFLMKEVLTYPKPAEEVEILTRTATGTFNRRRGENPVTTEDVLFLQNTVQRVYVDDAIKKYVVAIVNTTRGGGPRPIQGLMENIRVGASPRGGLSLMQVGQALALQAGRNYVIPDDVKQLRHAVLRHRLVRTFDALANDVTPEALIDMVFNAVPTP

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Crispr_ID: NZ_CP040503_18

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040503_18

1600469-1600554

Orphan

Consensus_repeat	Method
GGCGCGTCTGGCGGCTCAGCTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040503_18

>merge|NZ_CP040503|18|1600469-1600554|CRISPRCasFinder
GGATCGGCCGGCGGCGCGTCTGGCGGCTCAGCTGGCGGCGGGCACTCGTACGGATCGGCCGATGGCGCGTCTGGCGGCTCAGCCGG

>NZ_CP040503|18|17|1600469-1600554|CRISPRCasFinder
GGATCGGCCGGCGGCGCGTCTGG	CGGCTCAGCTGGCGGCGGGCACTCGTACGGATCGGCCGAT
GGCGCGTCTGGCGGCTCAGCCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040503.1\|WP_040322956.1\|1604636_1605464_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009197834.1\|1588086_1589250_-\|YbdK-family-carboxylate-amine-ligase	unknown	unknown	gnl\|CDD\|237408
NZ_CP040503.1\|WP_009197833.1\|1589271_1590042_-\|C26-family-cysteine-hydrolase-domain-containing-family	unknown	unknown	gnl\|CDD\|181035
NZ_CP040503.1\|WP_009197821.1\|1603806_1604583_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133022
NZ_CP040503.1\|WP_009197816.1\|1608533_1609172_-\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
NZ_CP040503.1\|WP_009197823.1\|1601578_1603495_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283837
NZ_CP040503.1\|WP_009197817.1\|1607453_1608491_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP040503.1\|WP_009197837.1\|1584103_1584532_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226231
NZ_CP040503.1\|WP_138587147.1\|1590417_1591968_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009197831.1\|1592076_1592901_-\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|223635
NZ_CP040503.1\|WP_083786090.1\|1609882_1610659_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP040503.1\|WP_009197826.1\|1597118_1599422_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378373
NZ_CP040503.1\|WP_009197818.1\|1605874_1607275_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349921
NZ_CP040503.1\|WP_009197813.1\|1610481_1611207_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|272861
NZ_CP040503.1\|WP_009197836.1\|1584771_1587654_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225844
NZ_CP040503.1\|WP_009197830.1\|1593028_1594291_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP040503.1\|WP_009197815.1\|1609309_1609810_+\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NZ_CP040503.1\|WP_009197829.1\|1594367_1595507_+\|diacylglycerol-kinase-catalytic-subunit	unknown	unknown	gnl\|CDD\|224513
NZ_CP040503.1\|WP_009197812.1\|1611203_1611917_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP040503.1\|WP_009197828.1\|1595677_1596625_-\|prephenate-dehydratase	unknown	unknown	gnl\|CDD\|237013

Protein	Function_ID	Function_description	E-value
NZ_CP040503.1\|WP_009197834.1\|1588086_1589250_-\|YbdK-family-carboxylate-amine-ligase	gnl\|CDD\|237408	PRK13517, PRK13517, glutamate--cysteine ligase.	1.14263e-134
NZ_CP040503.1\|WP_009197833.1\|1589271_1590042_-\|C26-family-cysteine-hydrolase-domain-containing-family	gnl\|CDD\|181035	PRK07567, PRK07567, glutamine amidotransferase; Provisional.	2.95849e-66
NZ_CP040503.1\|WP_009197821.1\|1603806_1604583_-\|glycosyltransferase	gnl\|CDD\|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	9.84952e-24
NZ_CP040503.1\|WP_009197816.1\|1608533_1609172_-\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	1.10703e-115
NZ_CP040503.1\|WP_009197823.1\|1601578_1603495_+\|hypothetical-protein	gnl\|CDD\|283837	pfam06259, Abhydrolase_8, Alpha/beta hydrolase. Members of this family are predicted to have an alpha/beta hydrolase fold. They contain a predicted Ser-His-Asp catalytic triad, in which the serine is likely to act as a nucleophile.	3.8045e-23
NZ_CP040503.1\|WP_009197817.1\|1607453_1608491_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	2.58281e-16
NZ_CP040503.1\|WP_009197837.1\|1584103_1584532_-\|hypothetical-protein	gnl\|CDD\|226231	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown].	7.3277e-08
NZ_CP040503.1\|WP_009197812.1\|1611203_1611917_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.5483e-75
NZ_CP040503.1\|WP_009197831.1\|1592076_1592901_-\|HAD-family-phosphatase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	5.41626e-45
NZ_CP040503.1\|WP_083786090.1\|1609882_1610659_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	6.82711e-11
NZ_CP040503.1\|WP_009197826.1\|1597118_1599422_+\|hypothetical-protein	gnl\|CDD\|378373	pfam10060, DUF2298, Uncharacterized membrane protein (DUF2298). This domain, found in various hypothetical bacterial proteins, has no known function.	0.00671093
NZ_CP040503.1\|WP_009197818.1\|1605874_1607275_-\|amidohydrolase	gnl\|CDD\|349921	cd05672, M20_ACY1L2-like, M20 Peptidase aminoacylase 1-like protein 2-like, amidohydrolase subfamily. Peptidase M20 family, aminoacylase 1-like protein 2 (ACY1L2; amidohydrolase)-like subfamily. This group contains many uncharacterized proteins predicted as amidohydrolases, including gene products of abgA and abgB that catalyze the cleavage of p-aminobenzoyl-glutamate, a folate catabolite in Escherichia coli, to p-aminobenzoate and glutamate. p-Aminobenzoyl-glutamate utilization is catalyzed by the abg region gene product, AbgT. This subfamily includes Staphylococcus aureus antibiotic resistance factor HmrA that has been shown to participate in methicillin resistance mechanisms in vivo in the presence of beta-lactams. Aminoacylase 1 (ACY1) proteins are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	1.41266e-123
NZ_CP040503.1\|WP_009197813.1\|1610481_1611207_-\|ABC-transporter-permease	gnl\|CDD\|272861	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family. The seed members for this model are a paralogous family of Mycobacterium tuberculosis. Nearly all proteins scoring above the noise cutoff are from high-GC Gram-positive organisms. The members of this paralogous family of efflux proteins are all found in operons with ATP-binding chain partners. They are related to a putative daunorubicin resistance efflux protein of Streptomyces peucetius. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.	8.30372e-26
NZ_CP040503.1\|WP_009197836.1\|1584771_1587654_-\|hypothetical-protein	gnl\|CDD\|225844	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane].	0.00326269
NZ_CP040503.1\|WP_009197830.1\|1593028_1594291_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP040503.1\|WP_009197815.1\|1609309_1609810_+\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	3.44729e-59
NZ_CP040503.1\|WP_009197829.1\|1594367_1595507_+\|diacylglycerol-kinase-catalytic-subunit	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	1.13006e-37
NZ_CP040503.1\|WP_009197828.1\|1595677_1596625_-\|prephenate-dehydratase	gnl\|CDD\|237013	PRK11898, PRK11898, prephenate dehydratase; Provisional.	1.30073e-99

>NZ_CP040503.1|WP_009197826.1|1597118_1599422_+|hypothetical-protein
MVLRSARQTILVAVALLAVLAGVCAPARAGTGGAARAGKPMAEGGGKGPVVVVGFSGVSWTDVTRKAAPHLYEFGKKAAVSNIVVRTVHETACPVEGWTALGAGQRTIDDGCRLPTVAGKAPARWARLKEANSSSSYKAKIGALGEALKGHSALAVGPGAALALAKPNGRLVGGYAALAPLPVSGEDGDVGGAARAYARSDADVTMIDLGAVRYPGNELSENHPVEAPGIAQRLREYFTPEGAAPEAVRQQISYIDARFGLLVKQIRKKTPNATVLVANVADAESSRPHLGYFAAAGPRMGGPALATSDSTRQPGLVQVTDIMPTLVGWLGAGPQARGNAIGSAITTAKASDGEANIARLDAEHTRAQVTRSLSGSFYVLLAALSAAILLMWARRNSYRWTETNERFFLQLSALTAALPVSTLLVNLIPWWRMSNPLVSLLMGVVLIAAVLALIALHGKSPFAPFAVIGGVTVATLALDVLLDGIWHGYPLQLAALLGMQPLVGWRFYGFSNNAVAMFVAGLVLVLAWHSSRAARKKSVAVILGAGALAVLLDGSAKFGADFGGPPVIVVGLGVLATMVAGKRLTWLRFGAVLASAVAVSFVFALFDYLQPAPKRSHLGKFVGSFFDGGGLAIVWRKVTQIFGGNALFIPVALAIVAAICAVAWLLAKRGRFARFRIEDEIVRRSVVSLVSALVVAALLNDSGVTMPAVGLIVAAPLWFVATLRRGEGATAGQGDAAMQEGAAAVQEEESVTQESAAQEAGRTATPR
>NZ_CP040503.1|WP_009197828.1|1595677_1596625_-|prephenate-dehydratase
MSATKQAPLRFSFLGPAGTFTYAALKQVAPPDSIEIPALDVPMALRLVRSGEADYAVVPIENSVEGGVNATLDALTDGSALQIKAEMLVPITFSLAVRPGTRREDIRAISTHSHAWAQCRGWIAERLGPVVHVPATSTAAGAKTLAESDSPGFEAALCPPATVKLMGLESLSDDVADNPGAVTRFIMVGLPGPQPERTGADKTTLLVQLPHDEAGALLSMLEQFSARGINLSRIESRPIGDSLGRYAFSIDAEGHLCDERIQAVLIGLHRVCPQVVFLGSYPSASGERIRPRPGTSDADFQAGREFVERLLAGRA
>NZ_CP040503.1|WP_009197829.1|1594367_1595507_+|diacylglycerol-kinase-catalytic-subunit
MTWHWWLILALALAALGLSLHNRASIGALRSRLVHANAAATGILPQKNAETGERTVAVVVNPTKIGDMRDLRAVVEQAAADAGYSATRWYGTTPDDPGAGQTRAALAEGPAVVIAAGGDGTVRTVAGQLAGTDVPLGILPLGTGNLLARNLNLPLGSSLSNLAMVALTGRPQRIDVGRIGAPEPTEGELAQIADMGPDARPFAGREPFLVIAGMGFDADVMNDADHGLKHAMGWGAYLVSGFKFMRRSRVNATVVAGDGSNSFRVEARSILFANCARLPAGFVLAPDARIDDGWLDLVLVDTKGWIFGWGDVMRRMGLQGIGVRRTILPSAGTIDLRRMRSATVTADRPELVEADGDALGYATKVTAEIDPLALTVHVL
>NZ_CP040503.1|WP_009197830.1|1593028_1594291_-|serine--tRNA-ligase
MIDIRFVRENPDAVRESQRRRGNDEASVDALLAADEARRSALQAFETARASQKELSRSIGKASPEERPAVLAEAKALAERVKELEAAANGAEQEYLQANAAIQNIVLEGVPAGGEEDYEVLKHVGEPRVFDFEPKDHLDVAEALDAIDMARGTKVSGSRFYYLKGVGARLELALLTMAVDQAEAAGFTMMTTPTLVNPDIMAGTGFLGAHSDEIYYLPADDQYLVGTSEVALAGYHKDEIVDLSNGPLRYAGWSSCYRREAGSYGKDTRGIIRVHQFNKVEMFSYCRLEEAEEEHRRFLAWEEEMLAKVELPYRVINTAAGDLGSSAAQKFDCEAWLPTQNRFMEVTSTSNCTTFQARRLGIRERFDGETRTAATLNGTLATTRWLVALFENHQRPDGSLYIPEALRPYLGGRESFEPVA
>NZ_CP040503.1|WP_009197831.1|1592076_1592901_-|HAD-family-phosphatase
MKSLAEAVEESGLPGAGPDLFVALDIDGTVLRHNNTLSPRVGEAIAAHMRAGTRICLATGRGIYGTREALDKVGIADGLAVCSNGAITLDLARDEAFNVHTFDPSRQVAALHAELPEALYAVESLDEPRRLTAHFPDGELTGPSVVVPIDELAVPDATRLTVRYPGMGAGELMDAVHAAGLRGVEYAIGWTAWLDVSPEGVSKAAALEDVRQSCGAAPSSTLAVGDGGNDVEMLGWAGLGVAMGDAGPSVKQAADAVTTGVDADGLALVLELLL
>NZ_CP040503.1|WP_138587147.1|1590417_1591968_+|hypothetical-protein
MKLYALTTPQGVFNAMVNSTSTPDDFVNIDEKIAALKLAAIDAYMYYYSWERKGDHYEPSMNNITEMPSIFDVLDHPPRVTRPGSDGEGGGDWSCSNWDIGKKVFGAWNDKSYGDAFEHIRTRIHDAIAPWKPSFPTHWSIQAEADAGWQAISEISTGSVKYRKIVDKGGTDGDSEETTSPETPGLVEAFDGVKTDCNTMKGNFADSIKLNFYDNLRGVTNNLRDAAIYWNSSLNAEAAIFKEVRKSVSKVIDDARSACETLASGGNPPSLIATLKLVDAVAKMATAAGQEHPDPGSVTSAATETAIATIELNDSMEVDIEGDGQGAKAGDYDDVLKFVESSLKSVSEKMRRAESAIEKSINSKLDEMSGGGKSSYDLQFEPVTDSSEFTKVDDATLKRLSTNRLPTISGHLRTCADKIMSVSMSNVVIRNVNCGYGAHGPSGGFEEMRETLGNLLRDLAWEVENGAANIETGRKLTESADEDNRNAFDQKLRDIADKKDKRSDIKMGHGHRWDLS
>NZ_CP040503.1|WP_009197833.1|1589271_1590042_-|C26-family-cysteine-hydrolase-domain-containing-family
MTNTPSIVQTAQPFLLAVCRMPGAIADDELETIIDWGRLDPNSGIETISLVDEDAVDPASLDLSRYSGVIITGSPFGFGQDENRKSREHQVMEHRILALSKRLVEEDVPTLGICFGLQAIVKALGGELVEGYGEDLQAPRMTLTPEAAGDPLTADMPQVFYGYTGHAEAVGDVPGDGVVLATGDYCRVQMVRWGENVYGTQFHPEITREGMRIRINTYGDTYYPADERAAVIARCDAAEVAESNRLITKFVARYSS
>NZ_CP040503.1|WP_009197834.1|1588086_1589250_-|YbdK-family-carboxylate-amine-ligase
MSIAFRDSERSTVGLEWEVQIVDPKTLKLGHNAKWILAEVRRRGCSLVKGEMHQNMLEFVSRKRVSVAECAADMEEAIDAALPYAEELGVGFSGGGSHPFAHPSDQPVSETARYRELVERTRYWGRQMVIFGTHVHVGVEDRRKVAPIHNFLSAKIGHLLGISAASPYWDDVDTGYADNRAMMFQQLPTAGLPMHLNSWGDLERIAGDLVDVGAIREYNEIRWDVRPSPGFGTIEVRACDSATNLAEIRAIAAFVHALVETASRELDAGRPLLSLPFHLLETNKWRGARYGAHAELVESADGECAPLAETLPDLLAWIEPAAEFLGCAEDLAAVPELIASPAADRLRAAAGPDGDLKAVAAHALAEFNAGRPIQPDPIGADPTAENP
>NZ_CP040503.1|WP_009197836.1|1584771_1587654_-|hypothetical-protein
MAAHARRFGAWAVLFLFALTVFAVAPRSAQAAKGANAAGASSRQLAQKQAERERSAGAANGAPSANRAAAGSRGAAPASGAQAAAKGGKRRTVVVVTGGVRWDQLDHARAPNLAQLGASGAMANLVPLATRGAPCPVDTWLAFSAGRQISERAISTTPTCAQPPVAAGDVLPNWDRYTRALAATDQKARLGRFAESLHKAGVTTHSIGDGGAYVLANGSGDVPANHTPNPLTVKELGEETARSAAKYDLTIVDADAESYASDQERDAARQLFQEQRKELENDQQPTPTPTDGIGPENPTPPDTVDGSTLQPDRRAFSAINTLRVESILERVPAGTRVVIMSAVDIDTYSYMQLFVMADVSTKGRIIPVGLAGSDSVRHEGLIQMLDVVPTLFEWAGADRTGIAGSPISVARTADACEQSQPCYTNRVDELADQSLHANKMRTFRGEFIQYMTWAAIGYFLLSLFFFARRFYASTLGRRRAYAKLWQWLGLTLSALPLASLVANYFGWWSASRPYVALFGGSWIGAAAVAAAVLPLARLHSLAPLTVVSCSTAALVAIDAATGSELMADSPVGFNLLTAARFYGIGNEAYALLASGALIGLAFLGVWLRRWGRFAAGGVVLFIGLAIGAIDALPSMGADFGGVLSFVPALGLLVLMVAKLRLSWRRLLVVGTVTMGAAVAIAVVDWMRPAEARTHLGRFVQSVVDGDLLAVVGRKLSTNIRLLSASTHRWVVLAALLLFFLCLIHLVRVPKNPDGAGGALPRAGGTLSRVSDAPSRVSGVPSPAGDVSSPAGDALSSATDRAEADAGAAVRVETAVAAQPEWTGTAQEGGRTERTETGASGEEALGEDAIEGRSKLRRAIAWCHMWAELVWLRLREWARRTRIRAEESWSLRPLEGRTFEGLRLGLISLGVCMALAFGLNDSGIVLPGMAAILVIPGIAVAAVKDREGGRREVGGNEPAEA
>NZ_CP040503.1|WP_009197837.1|1584103_1584532_-|hypothetical-protein
MNYQLRAVTIRTNNSLEGMTQIGNLWTDIMNGKFNLDLPPNGTIISRYSNYESDESGNYDLSVMAVKKDFVEQLEAEAKKGRFRVYRGETDDGDVAAATELAWQRVWNDTQSGELKRAFTVDYELSEIESGKTTCTVYIALP
>NZ_CP040503.1|WP_009197823.1|1601578_1603495_+|hypothetical-protein
MKWSDITDWEESTLETEYQQLCIREKEAEDWGREILELNKSTSWQGDARKAADKRVEEIDQDVAQFIVNLRAMKTATSTMQQGMGAVQGLVRDAKAHAEGSGLTIYSDGTVEDTSGTDWGDVALSTAMNPLSYALPGAGTLISAGTSYEMNKAARQKAVDECADRVDEAVKKANEIDEAYSQALSDIEEGKVKPEGSLKHTVDGPLPMPQDTSDTRAVAEWWDSLSREEQERLADEEPDRIGNLDGVDAWARDRANRHRLDRDYEDLNSRKESNEKKVADYEKWKASAAIGVPAPCSADEYNRAKSELDRQAELDKLKTALKQGAQYNGTSQLLLYDPVEPGENQDQLHAAVTVGDVDKADNVAVHVGGLTTSVDNNVVGYTAEMANVAGTAGGNTASVMWFGYDPPQAGAGSNGLFTVSETERAAAGGADLSHFLEGLHDSRQGSGEGGDPRITALGHSYGSTTLGYALTQVRDGVVDAGVFYGPPGVPAKDVSDFNVPSDSVYVMKNDQDIIGAVPNNGPMGAAPGSDMTQLSDPTEVPGIQHIEGNHGIDPGTGLVTGILGPIAGAGYEGYQDHVNYFDSTNYQDADTQKEIHKYLRQQGLPETDENVRAEIQRRQQENATSQQREVSKVVNGTK
>NZ_CP040503.1|WP_009197821.1|1603806_1604583_-|glycosyltransferase
MTTSEQRVAVVIPAKDEQDRIAATIRAARAIPHVDLVVVVDDGSEDDTQKAARDAGATVVRHSINRGKASAMETGAQVAAMRDTEGRPPRLLLFLDADLGDTAVEASPLVAPVLEGKADFTVAALPPQEGAGGFGLVTGAAFKAIKRTTGWEPRQPISGQRCMTREAFMAALPLASGWGVETGMTIDLLVAGFTVQEVVCDLKHRASGNNFAGQLHRADQYKGVAKAVLARRLRRIHVPHGKRNSASKPYEPYNAYKG
>NZ_CP040503.1|WP_040322956.1|1604636_1605464_-|hypothetical-protein
MAPKKPRAAVAFVERPFEGLSAEAELVAMREILPLATLPATTTEEYGSADVVLTTILPSMAGALRRADGVLLVAAQTVMSSGDASRDIAARIIDGIELPDGQALQVSDLPEPGPRLQDVVASFGELELHEIPSFWMTEEDAAKPENKEALEDSRSQLVPMRAVDGVRDAFWCRMSREFVRWVRPEPRDAVLDGLARLRAADDFSFDDSRFVGAFRALGLIIPVWELPKGAEADELAAPMAEFAPKLDAAIAASDPLTPEEKRARAGIVSRQVTLR
>NZ_CP040503.1|WP_009197818.1|1605874_1607275_-|amidohydrolase
MRDLSKPTVPSDAIQRRFAEETQARKAAAGPAASLADGEGSPAELREALAAAVEGLASEIVALSHAVHDNPEVGYEERFAVSAVADLLRAHGIEPEVGVYGMETALRAEFTGAAGNANSTGASGSAGNADSPAPAIAILAEYDALPGIGHGCGHNVMAGNSVGAFLALHELERRRPGSVPGRVVLQTTPAEECSTAKEVLAVRGMLDGIDAAVQTHSYSYDLTHQTWLGVRRIRAIFTGVPAHAASQPFMGRNALDAATLALTGFGLLRQQILPMDRLHAIVVDGGDVPNIVPERTEISLLARSKYPETLKDLVARVEDVLRGAALMTGTGLEIVTSETTNEMPVRTNGPLTRAWVRSQRERGRDPLPAGVVTETIAAGTDFGNVSVRIPGIHPLIKVADSDVALHTREMAAAAGSPSGDAAATDGAYGLASVALDYLHDAEFRAAVRRDFEEAGGVIDVEHFWDE
>NZ_CP040503.1|WP_009197817.1|1607453_1608491_-|alpha/beta-fold-hydrolase
MTAEIPPAPASVRPPSPSDILSIRTDCLGPTWVATSFALSEDDGGSPPGRPDVAVLVHEADAGDLAQKSGAAALYLPGFLDSFFHVEQAAAFREAGIPLAGLDMRRCGRSVRSNASRDDLRDIYVREEEIGLAIGRLRSLGAGRIALIGHSTGGLQAALWAADNPGTVDAVVLNSPWLDHNGGAFERGPLTRFIDRVGARRPRLVFSPLFLRYARALHTDFGGEFSFDPRHKPLRRAVARMGFIRTVRRAQARIAAGDVKIDVPLLVAHSDASSRRPRFPSRDDVAVRDAVLGVEDMKRLAPLLSERVDMLEIPGGRHDLALSAKPAREAYTRGVVDWVRKTLGL
>NZ_CP040503.1|WP_009197816.1|1608533_1609172_-|uracil-phosphoribosyltransferase
MRTQIIEHPLVAHKLTLLRDRNTPSPVFRQLVDELVTLLAYEATRDVAVREIDVVTPVAPTKGLSLAYPRPILVPILRAGLGMLEGMSKLLPTAEIGFLGMKRDETTLEAHTYANRLPDDLSGRQCYVVDPMLATGHTLIDAVNYLLERGARDVTCVCLLAAPEGLRNLEEAIGDRADVTIVSAALDERLNENGYIVPGLGDAGDRLYGIVD
>NZ_CP040503.1|WP_009197815.1|1609309_1609810_+|nucleoside-deaminase
MRCAKPRAAQGAPGHNGGVHEIEREWIGRAMELADRAALAGDVPVGALVVRGSAVLGVGWNTREARNDPAGHAEIAALREAAQAVGDWRLEGCDLYVTLEPCTMCAGAIVASRVARVVFGAWDPKAGAAGSVRDVLRDARLNHRVEVVGGVREDECSRQLRAFFGR
>NZ_CP040503.1|WP_083786090.1|1609882_1610659_-|TetR/AcrR-family-transcriptional-regulator
MARGPVERNAAHLGGRGVARGGGVPRSDGPLLDQSGHRRGIRSRRAQLGFAHPEAEDGVTRGRRRGSPATREQILDAARKVFDERGFRAASLRAVARTANVDPALVHYYFDSKVQLYTQSVGIGINPERVLAEVITPGRRGLGRRLMAFLTDLWESEVAQFVVESARENPALARQYAGVIVEQWRRAADILGFPHGIVREESLAQAIAVVAGVVTSKYLLELEPATSLTREQAIRVYGDLLQGVIDAAAAAEDPEAKK
>NZ_CP040503.1|WP_009197813.1|1610481_1611207_-|ABC-transporter-permease
MTLAIAARVARQLRHDPRTLALVTFVPSILVWLVHQIFDGEEPISSQVEMTLLAMFPLLLMFLLTAVATVRERSGGTLERLMAAPIRKMDVIGGYALAYGVLAIGQSSLLTAVCYWGLDMQLKGGIAWMLLVSLTTAMLGIALGLLASAVSRSEFQAVQFMPIVVVPQVLLCGLLGPREDMAGWLEGLSNAMPLTWAVEALQEVAEFPDLTGHYWTSLAIVAAFAAAALSLASLTLRRRTE
>NZ_CP040503.1|WP_009197812.1|1611203_1611917_-|ABC-transporter-ATP-binding-protein
MNEAIVIDDLEVTRGSRRVLKGVSISLEKGSITGLLGPSGSGKSTLIRSIAGVQKVESGTVTVLGRPAGSFAARASLGYMTQASAAYKDLTVRENVAHWARIARAPASAADEMISQLRLTDRAHALAADISGGQASRLSLACTMVGDPPVLLLDEPTVGLDPVLREEIWDLIRKRAAAGTTVLVSSHVMDEAQRCDSLVFIREGSILATGTADDILEETATSSMDAAFLALAKEQAE

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Crispr_ID: NZ_CP040503_19

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040503_19

1605766-1605851

Orphan

Consensus_repeat	Method
GAGCGAATGGCCCGGCTCGCAAGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040503_19

>merge|NZ_CP040503|19|1605766-1605851|CRISPRCasFinder
GAGCGAATGGCCCGGCTCGCAAGCGCAGGGCGTCAAAGGCGCCGGTTGGACGCCGTCTCGGAGCGAATGGCCCGGCTCGCAATCGC

>NZ_CP040503|19|18|1605766-1605851|CRISPRCasFinder
GAGCGAATGGCCCGGCTCGCAAGCGC	AGGGCGTCAAAGGCGCCGGTTGGACGCCGTCTCG
GAGCGAATGGCCCGGCTCGCAATCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040503.1\|WP_040322956.1\|1604636_1605464_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009197831.1\|1592076_1592901_-\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|223635
NZ_CP040503.1\|WP_009197824.1\|1600045_1601488_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237537
NZ_CP040503.1\|WP_138587148.1\|1612826_1613903_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009197816.1\|1608533_1609172_-\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
NZ_CP040503.1\|WP_009197830.1\|1593028_1594291_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP040503.1\|WP_009197817.1\|1607453_1608491_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP040503.1\|WP_009197812.1\|1611203_1611917_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP040503.1\|WP_138587147.1\|1590417_1591968_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_138587149.1\|1613915_1614212_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009197821.1\|1603806_1604583_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133022
NZ_CP040503.1\|WP_083786090.1\|1609882_1610659_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP040503.1\|WP_009197826.1\|1597118_1599422_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378373
NZ_CP040503.1\|WP_009197818.1\|1605874_1607275_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349921
NZ_CP040503.1\|WP_009197813.1\|1610481_1611207_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|272861
NZ_CP040503.1\|WP_009197823.1\|1601578_1603495_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283837
NZ_CP040503.1\|WP_009197815.1\|1609309_1609810_+\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NZ_CP040503.1\|WP_009197829.1\|1594367_1595507_+\|diacylglycerol-kinase-catalytic-subunit	unknown	unknown	gnl\|CDD\|224513
NZ_CP040503.1\|WP_009197807.1\|1614208_1614799_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274698
NZ_CP040503.1\|WP_009197828.1\|1595677_1596625_-\|prephenate-dehydratase	unknown	unknown	gnl\|CDD\|237013

Protein	Function_ID	Function_description	E-value
NZ_CP040503.1\|WP_009197831.1\|1592076_1592901_-\|HAD-family-phosphatase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	5.41626e-45
NZ_CP040503.1\|WP_009197824.1\|1600045_1601488_+\|hypothetical-protein	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	5.25908e-06
NZ_CP040503.1\|WP_009197816.1\|1608533_1609172_-\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	1.10703e-115
NZ_CP040503.1\|WP_009197817.1\|1607453_1608491_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	2.58281e-16
NZ_CP040503.1\|WP_009197812.1\|1611203_1611917_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.5483e-75
NZ_CP040503.1\|WP_009197821.1\|1603806_1604583_-\|glycosyltransferase	gnl\|CDD\|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	9.84952e-24
NZ_CP040503.1\|WP_083786090.1\|1609882_1610659_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	6.82711e-11
NZ_CP040503.1\|WP_009197826.1\|1597118_1599422_+\|hypothetical-protein	gnl\|CDD\|378373	pfam10060, DUF2298, Uncharacterized membrane protein (DUF2298). This domain, found in various hypothetical bacterial proteins, has no known function.	0.00671093
NZ_CP040503.1\|WP_009197818.1\|1605874_1607275_-\|amidohydrolase	gnl\|CDD\|349921	cd05672, M20_ACY1L2-like, M20 Peptidase aminoacylase 1-like protein 2-like, amidohydrolase subfamily. Peptidase M20 family, aminoacylase 1-like protein 2 (ACY1L2; amidohydrolase)-like subfamily. This group contains many uncharacterized proteins predicted as amidohydrolases, including gene products of abgA and abgB that catalyze the cleavage of p-aminobenzoyl-glutamate, a folate catabolite in Escherichia coli, to p-aminobenzoate and glutamate. p-Aminobenzoyl-glutamate utilization is catalyzed by the abg region gene product, AbgT. This subfamily includes Staphylococcus aureus antibiotic resistance factor HmrA that has been shown to participate in methicillin resistance mechanisms in vivo in the presence of beta-lactams. Aminoacylase 1 (ACY1) proteins are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	1.41266e-123
NZ_CP040503.1\|WP_009197813.1\|1610481_1611207_-\|ABC-transporter-permease	gnl\|CDD\|272861	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family. The seed members for this model are a paralogous family of Mycobacterium tuberculosis. Nearly all proteins scoring above the noise cutoff are from high-GC Gram-positive organisms. The members of this paralogous family of efflux proteins are all found in operons with ATP-binding chain partners. They are related to a putative daunorubicin resistance efflux protein of Streptomyces peucetius. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.	8.30372e-26
NZ_CP040503.1\|WP_009197823.1\|1601578_1603495_+\|hypothetical-protein	gnl\|CDD\|283837	pfam06259, Abhydrolase_8, Alpha/beta hydrolase. Members of this family are predicted to have an alpha/beta hydrolase fold. They contain a predicted Ser-His-Asp catalytic triad, in which the serine is likely to act as a nucleophile.	3.8045e-23
NZ_CP040503.1\|WP_009197815.1\|1609309_1609810_+\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	3.44729e-59
NZ_CP040503.1\|WP_009197829.1\|1594367_1595507_+\|diacylglycerol-kinase-catalytic-subunit	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	1.13006e-37
NZ_CP040503.1\|WP_009197830.1\|1593028_1594291_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP040503.1\|WP_009197807.1\|1614208_1614799_+\|hypothetical-protein	gnl\|CDD\|274698	TIGR03648, Na_symport_lg, probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.	0.000295708
NZ_CP040503.1\|WP_009197828.1\|1595677_1596625_-\|prephenate-dehydratase	gnl\|CDD\|237013	PRK11898, PRK11898, prephenate dehydratase; Provisional.	1.30073e-99

>NZ_CP040503.1|WP_040322956.1|1604636_1605464_-|hypothetical-protein
MAPKKPRAAVAFVERPFEGLSAEAELVAMREILPLATLPATTTEEYGSADVVLTTILPSMAGALRRADGVLLVAAQTVMSSGDASRDIAARIIDGIELPDGQALQVSDLPEPGPRLQDVVASFGELELHEIPSFWMTEEDAAKPENKEALEDSRSQLVPMRAVDGVRDAFWCRMSREFVRWVRPEPRDAVLDGLARLRAADDFSFDDSRFVGAFRALGLIIPVWELPKGAEADELAAPMAEFAPKLDAAIAASDPLTPEEKRARAGIVSRQVTLR
>NZ_CP040503.1|WP_009197821.1|1603806_1604583_-|glycosyltransferase
MTTSEQRVAVVIPAKDEQDRIAATIRAARAIPHVDLVVVVDDGSEDDTQKAARDAGATVVRHSINRGKASAMETGAQVAAMRDTEGRPPRLLLFLDADLGDTAVEASPLVAPVLEGKADFTVAALPPQEGAGGFGLVTGAAFKAIKRTTGWEPRQPISGQRCMTREAFMAALPLASGWGVETGMTIDLLVAGFTVQEVVCDLKHRASGNNFAGQLHRADQYKGVAKAVLARRLRRIHVPHGKRNSASKPYEPYNAYKG
>NZ_CP040503.1|WP_009197823.1|1601578_1603495_+|hypothetical-protein
MKWSDITDWEESTLETEYQQLCIREKEAEDWGREILELNKSTSWQGDARKAADKRVEEIDQDVAQFIVNLRAMKTATSTMQQGMGAVQGLVRDAKAHAEGSGLTIYSDGTVEDTSGTDWGDVALSTAMNPLSYALPGAGTLISAGTSYEMNKAARQKAVDECADRVDEAVKKANEIDEAYSQALSDIEEGKVKPEGSLKHTVDGPLPMPQDTSDTRAVAEWWDSLSREEQERLADEEPDRIGNLDGVDAWARDRANRHRLDRDYEDLNSRKESNEKKVADYEKWKASAAIGVPAPCSADEYNRAKSELDRQAELDKLKTALKQGAQYNGTSQLLLYDPVEPGENQDQLHAAVTVGDVDKADNVAVHVGGLTTSVDNNVVGYTAEMANVAGTAGGNTASVMWFGYDPPQAGAGSNGLFTVSETERAAAGGADLSHFLEGLHDSRQGSGEGGDPRITALGHSYGSTTLGYALTQVRDGVVDAGVFYGPPGVPAKDVSDFNVPSDSVYVMKNDQDIIGAVPNNGPMGAAPGSDMTQLSDPTEVPGIQHIEGNHGIDPGTGLVTGILGPIAGAGYEGYQDHVNYFDSTNYQDADTQKEIHKYLRQQGLPETDENVRAEIQRRQQENATSQQREVSKVVNGTK
>NZ_CP040503.1|WP_009197824.1|1600045_1601488_+|hypothetical-protein
MGPGGADTLSADPKELATEAGNAQDCAAKSQRMRTENTAGSISGKISGGKAASTVKTTSEHLSNELKDIEHQLSDYSDDVVATMRTIEQTDQDEAGMYRGMIPPGDAGGLAEGIGAGAGAGAVDGGAAGGSGAAIGGGHSYGSAGGASGGSAGGGHSYGSADGASGGSAGGGHSYGSANGGAGQLFGSPGASGMSSLLDGAGGGSVVGGHSYGSTESGQIVGSHGGHNSTGALSGIHSLMSGDSDSFSSHAGGSHPAPMPRVEGSGDPAPMPHAETSGNAAPMPHVESQDGKILPSVEQGHSYGSQLSGSGSSHGGSLGPAPMPQVETPGDPAPMPNAGGTGNPVPMPTSEGSGNPVFTSHGSVHSATNSSGSFTPTPMPHAAPSGDPVAMPHVETSGNPAPMPRIEPSDPPVFTRGGGADYGPRIPGVGADGGSFAPSPMPHVENPGNAVPLPSTQGSDVPAPMPRVHGSGGSSSAATA
>NZ_CP040503.1|WP_009197826.1|1597118_1599422_+|hypothetical-protein
MVLRSARQTILVAVALLAVLAGVCAPARAGTGGAARAGKPMAEGGGKGPVVVVGFSGVSWTDVTRKAAPHLYEFGKKAAVSNIVVRTVHETACPVEGWTALGAGQRTIDDGCRLPTVAGKAPARWARLKEANSSSSYKAKIGALGEALKGHSALAVGPGAALALAKPNGRLVGGYAALAPLPVSGEDGDVGGAARAYARSDADVTMIDLGAVRYPGNELSENHPVEAPGIAQRLREYFTPEGAAPEAVRQQISYIDARFGLLVKQIRKKTPNATVLVANVADAESSRPHLGYFAAAGPRMGGPALATSDSTRQPGLVQVTDIMPTLVGWLGAGPQARGNAIGSAITTAKASDGEANIARLDAEHTRAQVTRSLSGSFYVLLAALSAAILLMWARRNSYRWTETNERFFLQLSALTAALPVSTLLVNLIPWWRMSNPLVSLLMGVVLIAAVLALIALHGKSPFAPFAVIGGVTVATLALDVLLDGIWHGYPLQLAALLGMQPLVGWRFYGFSNNAVAMFVAGLVLVLAWHSSRAARKKSVAVILGAGALAVLLDGSAKFGADFGGPPVIVVGLGVLATMVAGKRLTWLRFGAVLASAVAVSFVFALFDYLQPAPKRSHLGKFVGSFFDGGGLAIVWRKVTQIFGGNALFIPVALAIVAAICAVAWLLAKRGRFARFRIEDEIVRRSVVSLVSALVVAALLNDSGVTMPAVGLIVAAPLWFVATLRRGEGATAGQGDAAMQEGAAAVQEEESVTQESAAQEAGRTATPR
>NZ_CP040503.1|WP_009197828.1|1595677_1596625_-|prephenate-dehydratase
MSATKQAPLRFSFLGPAGTFTYAALKQVAPPDSIEIPALDVPMALRLVRSGEADYAVVPIENSVEGGVNATLDALTDGSALQIKAEMLVPITFSLAVRPGTRREDIRAISTHSHAWAQCRGWIAERLGPVVHVPATSTAAGAKTLAESDSPGFEAALCPPATVKLMGLESLSDDVADNPGAVTRFIMVGLPGPQPERTGADKTTLLVQLPHDEAGALLSMLEQFSARGINLSRIESRPIGDSLGRYAFSIDAEGHLCDERIQAVLIGLHRVCPQVVFLGSYPSASGERIRPRPGTSDADFQAGREFVERLLAGRA
>NZ_CP040503.1|WP_009197829.1|1594367_1595507_+|diacylglycerol-kinase-catalytic-subunit
MTWHWWLILALALAALGLSLHNRASIGALRSRLVHANAAATGILPQKNAETGERTVAVVVNPTKIGDMRDLRAVVEQAAADAGYSATRWYGTTPDDPGAGQTRAALAEGPAVVIAAGGDGTVRTVAGQLAGTDVPLGILPLGTGNLLARNLNLPLGSSLSNLAMVALTGRPQRIDVGRIGAPEPTEGELAQIADMGPDARPFAGREPFLVIAGMGFDADVMNDADHGLKHAMGWGAYLVSGFKFMRRSRVNATVVAGDGSNSFRVEARSILFANCARLPAGFVLAPDARIDDGWLDLVLVDTKGWIFGWGDVMRRMGLQGIGVRRTILPSAGTIDLRRMRSATVTADRPELVEADGDALGYATKVTAEIDPLALTVHVL
>NZ_CP040503.1|WP_009197830.1|1593028_1594291_-|serine--tRNA-ligase
MIDIRFVRENPDAVRESQRRRGNDEASVDALLAADEARRSALQAFETARASQKELSRSIGKASPEERPAVLAEAKALAERVKELEAAANGAEQEYLQANAAIQNIVLEGVPAGGEEDYEVLKHVGEPRVFDFEPKDHLDVAEALDAIDMARGTKVSGSRFYYLKGVGARLELALLTMAVDQAEAAGFTMMTTPTLVNPDIMAGTGFLGAHSDEIYYLPADDQYLVGTSEVALAGYHKDEIVDLSNGPLRYAGWSSCYRREAGSYGKDTRGIIRVHQFNKVEMFSYCRLEEAEEEHRRFLAWEEEMLAKVELPYRVINTAAGDLGSSAAQKFDCEAWLPTQNRFMEVTSTSNCTTFQARRLGIRERFDGETRTAATLNGTLATTRWLVALFENHQRPDGSLYIPEALRPYLGGRESFEPVA
>NZ_CP040503.1|WP_009197831.1|1592076_1592901_-|HAD-family-phosphatase
MKSLAEAVEESGLPGAGPDLFVALDIDGTVLRHNNTLSPRVGEAIAAHMRAGTRICLATGRGIYGTREALDKVGIADGLAVCSNGAITLDLARDEAFNVHTFDPSRQVAALHAELPEALYAVESLDEPRRLTAHFPDGELTGPSVVVPIDELAVPDATRLTVRYPGMGAGELMDAVHAAGLRGVEYAIGWTAWLDVSPEGVSKAAALEDVRQSCGAAPSSTLAVGDGGNDVEMLGWAGLGVAMGDAGPSVKQAADAVTTGVDADGLALVLELLL
>NZ_CP040503.1|WP_138587147.1|1590417_1591968_+|hypothetical-protein
MKLYALTTPQGVFNAMVNSTSTPDDFVNIDEKIAALKLAAIDAYMYYYSWERKGDHYEPSMNNITEMPSIFDVLDHPPRVTRPGSDGEGGGDWSCSNWDIGKKVFGAWNDKSYGDAFEHIRTRIHDAIAPWKPSFPTHWSIQAEADAGWQAISEISTGSVKYRKIVDKGGTDGDSEETTSPETPGLVEAFDGVKTDCNTMKGNFADSIKLNFYDNLRGVTNNLRDAAIYWNSSLNAEAAIFKEVRKSVSKVIDDARSACETLASGGNPPSLIATLKLVDAVAKMATAAGQEHPDPGSVTSAATETAIATIELNDSMEVDIEGDGQGAKAGDYDDVLKFVESSLKSVSEKMRRAESAIEKSINSKLDEMSGGGKSSYDLQFEPVTDSSEFTKVDDATLKRLSTNRLPTISGHLRTCADKIMSVSMSNVVIRNVNCGYGAHGPSGGFEEMRETLGNLLRDLAWEVENGAANIETGRKLTESADEDNRNAFDQKLRDIADKKDKRSDIKMGHGHRWDLS
>NZ_CP040503.1|WP_009197818.1|1605874_1607275_-|amidohydrolase
MRDLSKPTVPSDAIQRRFAEETQARKAAAGPAASLADGEGSPAELREALAAAVEGLASEIVALSHAVHDNPEVGYEERFAVSAVADLLRAHGIEPEVGVYGMETALRAEFTGAAGNANSTGASGSAGNADSPAPAIAILAEYDALPGIGHGCGHNVMAGNSVGAFLALHELERRRPGSVPGRVVLQTTPAEECSTAKEVLAVRGMLDGIDAAVQTHSYSYDLTHQTWLGVRRIRAIFTGVPAHAASQPFMGRNALDAATLALTGFGLLRQQILPMDRLHAIVVDGGDVPNIVPERTEISLLARSKYPETLKDLVARVEDVLRGAALMTGTGLEIVTSETTNEMPVRTNGPLTRAWVRSQRERGRDPLPAGVVTETIAAGTDFGNVSVRIPGIHPLIKVADSDVALHTREMAAAAGSPSGDAAATDGAYGLASVALDYLHDAEFRAAVRRDFEEAGGVIDVEHFWDE
>NZ_CP040503.1|WP_009197817.1|1607453_1608491_-|alpha/beta-fold-hydrolase
MTAEIPPAPASVRPPSPSDILSIRTDCLGPTWVATSFALSEDDGGSPPGRPDVAVLVHEADAGDLAQKSGAAALYLPGFLDSFFHVEQAAAFREAGIPLAGLDMRRCGRSVRSNASRDDLRDIYVREEEIGLAIGRLRSLGAGRIALIGHSTGGLQAALWAADNPGTVDAVVLNSPWLDHNGGAFERGPLTRFIDRVGARRPRLVFSPLFLRYARALHTDFGGEFSFDPRHKPLRRAVARMGFIRTVRRAQARIAAGDVKIDVPLLVAHSDASSRRPRFPSRDDVAVRDAVLGVEDMKRLAPLLSERVDMLEIPGGRHDLALSAKPAREAYTRGVVDWVRKTLGL
>NZ_CP040503.1|WP_009197816.1|1608533_1609172_-|uracil-phosphoribosyltransferase
MRTQIIEHPLVAHKLTLLRDRNTPSPVFRQLVDELVTLLAYEATRDVAVREIDVVTPVAPTKGLSLAYPRPILVPILRAGLGMLEGMSKLLPTAEIGFLGMKRDETTLEAHTYANRLPDDLSGRQCYVVDPMLATGHTLIDAVNYLLERGARDVTCVCLLAAPEGLRNLEEAIGDRADVTIVSAALDERLNENGYIVPGLGDAGDRLYGIVD
>NZ_CP040503.1|WP_009197815.1|1609309_1609810_+|nucleoside-deaminase
MRCAKPRAAQGAPGHNGGVHEIEREWIGRAMELADRAALAGDVPVGALVVRGSAVLGVGWNTREARNDPAGHAEIAALREAAQAVGDWRLEGCDLYVTLEPCTMCAGAIVASRVARVVFGAWDPKAGAAGSVRDVLRDARLNHRVEVVGGVREDECSRQLRAFFGR
>NZ_CP040503.1|WP_083786090.1|1609882_1610659_-|TetR/AcrR-family-transcriptional-regulator
MARGPVERNAAHLGGRGVARGGGVPRSDGPLLDQSGHRRGIRSRRAQLGFAHPEAEDGVTRGRRRGSPATREQILDAARKVFDERGFRAASLRAVARTANVDPALVHYYFDSKVQLYTQSVGIGINPERVLAEVITPGRRGLGRRLMAFLTDLWESEVAQFVVESARENPALARQYAGVIVEQWRRAADILGFPHGIVREESLAQAIAVVAGVVTSKYLLELEPATSLTREQAIRVYGDLLQGVIDAAAAAEDPEAKK
>NZ_CP040503.1|WP_009197813.1|1610481_1611207_-|ABC-transporter-permease
MTLAIAARVARQLRHDPRTLALVTFVPSILVWLVHQIFDGEEPISSQVEMTLLAMFPLLLMFLLTAVATVRERSGGTLERLMAAPIRKMDVIGGYALAYGVLAIGQSSLLTAVCYWGLDMQLKGGIAWMLLVSLTTAMLGIALGLLASAVSRSEFQAVQFMPIVVVPQVLLCGLLGPREDMAGWLEGLSNAMPLTWAVEALQEVAEFPDLTGHYWTSLAIVAAFAAAALSLASLTLRRRTE
>NZ_CP040503.1|WP_009197812.1|1611203_1611917_-|ABC-transporter-ATP-binding-protein
MNEAIVIDDLEVTRGSRRVLKGVSISLEKGSITGLLGPSGSGKSTLIRSIAGVQKVESGTVTVLGRPAGSFAARASLGYMTQASAAYKDLTVRENVAHWARIARAPASAADEMISQLRLTDRAHALAADISGGQASRLSLACTMVGDPPVLLLDEPTVGLDPVLREEIWDLIRKRAAAGTTVLVSSHVMDEAQRCDSLVFIREGSILATGTADDILEETATSSMDAAFLALAKEQAE
>NZ_CP040503.1|WP_138587148.1|1612826_1613903_+|hypothetical-protein
MADVKVDLDSLGYLSGSYRGLSDTVSSAQTYQSTHINLNASGKVSGVSTAVLDQAKKVEDALTTWLSDTEKATSGSADCVDDCVRSYQENERVSAELFDGHYTPADVASARSGASSTASGKLTTPAAQKTFATVFNAIGMVGNSISPSYWLGTAADAVLDLILGQGEHDPFAAIGNTIAGDWEPFSVASDALSKMSDYFKELGTETKNYWNNVDPDWDGGASDAASDALGKMGTSFDDASERLTKFSSSYNAVAVGVYDTADTLAGLLRTLADWGIAAVASAAAGTATFETVVGPIVGYVAAGAAVLKVLSTVREIFDVLGKVWDFVTLFTGQCSLWLGLVHGSGDPLTIYKPSFSEQ
>NZ_CP040503.1|WP_138587149.1|1613915_1614212_+|hypothetical-protein
MTNQDNPKPVLPSIPAGSPMDDALRGSLRKMKNDADPQIRRLIDDILAGKRTMRDLAATEWFGRRVREARPNLEAIRKEVEKLEKEPGAADRITEKPE
>NZ_CP040503.1|WP_009197807.1|1614208_1614799_+|hypothetical-protein
MKAESGARDARPQDDDGRESRGASETEAPGAVPSSGRTGRSRLALSVVAVIVGIPGFVAAGAGFPNVKTVAFGATSLIIASVIGCFALVWKANRRDAIMSAMLLAGALGLAFTAVYALIHYREIHEISIRGDSSPSARKQALALICGPVMVGLWFLLLGLGAMRKARKKGGGDKREPEARERQKQEQGTEENRRQS

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Crispr_ID: NZ_CP040503_20

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040503_20

1617423-1617504

Orphan

Consensus_repeat	Method
CGACGTCCCCTCGTTCGCCGGGGCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040503_20

>merge|NZ_CP040503|20|1617423-1617504|CRISPRCasFinder
CGACGTCCCCTCGTTCGCCGGGGCCGAACAGGGGAGTCTTCGGCCGCCGCGTATTCGACGTCTCCTCGTTCGCCGGGGCCGA

>NZ_CP040503|20|19|1617423-1617504|CRISPRCasFinder
CGACGTCCCCTCGTTCGCCGGGGCCGA	ACAGGGGAGTCTTCGGCCGCCGCGTATT
CGACGTCTCCTCGTTCGCCGGGGCCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040503.1\|WP_009197800.1\|1622582_1623554_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP040503.1\|WP_040322945.1\|1628488_1628845_-\|glyoxalase	unknown	unknown	gnl\|CDD\|319911
NZ_CP040503.1\|WP_009197794.1\|1629109_1630171_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_138587150.1\|1618332_1619211_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP040503.1\|WP_050758752.1\|1620072_1621464_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP040503.1\|WP_009197807.1\|1614208_1614799_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274698
NZ_CP040503.1\|WP_009197816.1\|1608533_1609172_-\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
NZ_CP040503.1\|WP_009197817.1\|1607453_1608491_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP040503.1\|WP_009197812.1\|1611203_1611917_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP040503.1\|WP_009197798.1\|1623757_1624885_+\|3-dehydroquinate-synthase	unknown	unknown	gnl\|CDD\|341474
NZ_CP040503.1\|WP_083786090.1\|1609882_1610659_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP040503.1\|WP_138587149.1\|1613915_1614212_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009197813.1\|1610481_1611207_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|272861
NZ_CP040503.1\|WP_138587148.1\|1612826_1613903_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009197815.1\|1609309_1609810_+\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NZ_CP040503.1\|WP_009197803.1\|1619380_1619989_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP040503.1\|WP_009197797.1\|1624911_1627980_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378390
NZ_CP040503.1\|WP_009197801.1\|1621741_1622581_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP040503.1\|WP_009197806.1\|1614895_1617364_-\|HAD-IC-family-P-type-ATPase	unknown	unknown	gnl\|CDD\|319795
NZ_CP040503.1\|WP_009197805.1\|1617583_1618336_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223912

Protein	Function_ID	Function_description	E-value
NZ_CP040503.1\|WP_040322945.1\|1628488_1628845_-\|glyoxalase	gnl\|CDD\|319911	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a streptomycin resistance protein.	7.883e-17
NZ_CP040503.1\|WP_138587150.1\|1618332_1619211_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.73599e-74
NZ_CP040503.1\|WP_050758752.1\|1620072_1621464_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.67078e-28
NZ_CP040503.1\|WP_009197807.1\|1614208_1614799_+\|hypothetical-protein	gnl\|CDD\|274698	TIGR03648, Na_symport_lg, probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.	0.000295708
NZ_CP040503.1\|WP_009197797.1\|1624911_1627980_-\|hypothetical-protein	gnl\|CDD\|378390	pfam10101, DUF2339, Predicted membrane protein (DUF2339). This domain, found in various hypothetical bacterial proteins, has no known function.	3.65746e-12
NZ_CP040503.1\|WP_009197817.1\|1607453_1608491_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	2.58281e-16
NZ_CP040503.1\|WP_009197812.1\|1611203_1611917_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.5483e-75
NZ_CP040503.1\|WP_009197798.1\|1623757_1624885_+\|3-dehydroquinate-synthase	gnl\|CDD\|341474	cd08195, DHQS, Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol condensation. The binding of substrates and ligands induces domain conformational changes. In some fungi and protozoa, this domain is fused with the other four domains in shikimate pathway and forms a penta-domain AROM protein, which catalyzes steps 2-6 in the shikimate pathway.	1.69945e-145
NZ_CP040503.1\|WP_083786090.1\|1609882_1610659_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	6.82711e-11
NZ_CP040503.1\|WP_009197800.1\|1622582_1623554_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	3.65862e-75
NZ_CP040503.1\|WP_009197813.1\|1610481_1611207_-\|ABC-transporter-permease	gnl\|CDD\|272861	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family. The seed members for this model are a paralogous family of Mycobacterium tuberculosis. Nearly all proteins scoring above the noise cutoff are from high-GC Gram-positive organisms. The members of this paralogous family of efflux proteins are all found in operons with ATP-binding chain partners. They are related to a putative daunorubicin resistance efflux protein of Streptomyces peucetius. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.	8.30372e-26
NZ_CP040503.1\|WP_009197816.1\|1608533_1609172_-\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	1.10703e-115
NZ_CP040503.1\|WP_009197815.1\|1609309_1609810_+\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	3.44729e-59
NZ_CP040503.1\|WP_009197803.1\|1619380_1619989_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.01857e-64
NZ_CP040503.1\|WP_009197801.1\|1621741_1622581_-\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	8.33574e-09
NZ_CP040503.1\|WP_009197806.1\|1614895_1617364_-\|HAD-IC-family-P-type-ATPase	gnl\|CDD\|319795	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7. This subfamily contains P-type ATPase transporters of unknown function, similar to Streptococcus pneumoniae Exp7. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids. They are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle. A general characteristic of P-type ATPases is a bundle of transmembrane helices which make up the transport path, and three domains on the cytoplasmic side of the membrane. Members include pumps that transport various light metal ions, such as H(+), Na(+), K(+), Ca(2+), and Mg(2+), pumps that transport indispensable trace elements, such as Zn(2+) and Cu(2+), pumps that remove toxic heavy metal ions, such as Cd(2+), and pumps such as aminophospholipid translocases which transport phosphatidylserine and phosphatidylethanolamine.	0
NZ_CP040503.1\|WP_009197805.1\|1617583_1618336_-\|ABC-transporter-permease	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	1.50423e-05

>NZ_CP040503.1|WP_009197806.1|1614895_1617364_-|HAD-IC-family-P-type-ATPase
MTSAQSLTDVKEPSGVQGLTGSEVAQRIQQGKVNTLPPRSGRSALDIVRANVFTRVNALLGVLFVLVMTTGSWVNGAFGLLIIANSAVGIVQELRAKHTLDSLAVVGEAHPTVRRNGKETQIERDEVVEDDVVVVGPGEQIVVDGAVVESAYLEVDESLLTGESDPIAKKPGDEIMSGSFVASGTGAYRATKVGADSYAAKLTAEAAKFSLVHSELQSGIDKILKAITWVLVPLGILTVISQTRIEQNDWRQVVIKVTGALVPMIPEGLILTTSVAFALGVVRLGMRKCLVNELPAIEGLARVDVVCADKTGTLTENAMSFGRVETIGSHSQDEALEALRQLGAADDSPNSSMTAIIEGVGRPQAAWEVSERQPFTSAKKWSGISFAAGEGSAARNVVLGAPDILAPDVARAQEIASTGLRVLLLGYAQTNVTAHDAPGEVDPLALVVLEQKVRPDAADTLEFFHSQGVQVKVISGDNADSVGAVTRSLGMDSGQPVDARTILEADFNKVVNERQVFGRVTPQQKRAMVSALQSAGHTVAMTGDGVNDVLALKDADLGVAMGSGTAATRSVAKIVLLDDKFATLPYVVREGRRVLGNIERVANLFLTKTVYSAIIAMLTVIFAVKAPFQPIHVTITGWFTIGVPAFILSLPPNNERARPGFVRRVLGFGFPAGALVAIPSFITYTIALRSATQAQASTAALLALIVSSTWVLAIVARPYEWWKIALIVLPLVGYGLIFSVSALQKTFMLDSSNLGVMALAAAVGGCGAVAIELLWWFTPGHPAYWMPKAERYAAAAQRRIEREALRQERAQRQESTQRHEDA
>NZ_CP040503.1|WP_009197807.1|1614208_1614799_+|hypothetical-protein
MKAESGARDARPQDDDGRESRGASETEAPGAVPSSGRTGRSRLALSVVAVIVGIPGFVAAGAGFPNVKTVAFGATSLIIASVIGCFALVWKANRRDAIMSAMLLAGALGLAFTAVYALIHYREIHEISIRGDSSPSARKQALALICGPVMVGLWFLLLGLGAMRKARKKGGGDKREPEARERQKQEQGTEENRRQS
>NZ_CP040503.1|WP_138587149.1|1613915_1614212_+|hypothetical-protein
MTNQDNPKPVLPSIPAGSPMDDALRGSLRKMKNDADPQIRRLIDDILAGKRTMRDLAATEWFGRRVREARPNLEAIRKEVEKLEKEPGAADRITEKPE
>NZ_CP040503.1|WP_138587148.1|1612826_1613903_+|hypothetical-protein
MADVKVDLDSLGYLSGSYRGLSDTVSSAQTYQSTHINLNASGKVSGVSTAVLDQAKKVEDALTTWLSDTEKATSGSADCVDDCVRSYQENERVSAELFDGHYTPADVASARSGASSTASGKLTTPAAQKTFATVFNAIGMVGNSISPSYWLGTAADAVLDLILGQGEHDPFAAIGNTIAGDWEPFSVASDALSKMSDYFKELGTETKNYWNNVDPDWDGGASDAASDALGKMGTSFDDASERLTKFSSSYNAVAVGVYDTADTLAGLLRTLADWGIAAVASAAAGTATFETVVGPIVGYVAAGAAVLKVLSTVREIFDVLGKVWDFVTLFTGQCSLWLGLVHGSGDPLTIYKPSFSEQ
>NZ_CP040503.1|WP_009197812.1|1611203_1611917_-|ABC-transporter-ATP-binding-protein
MNEAIVIDDLEVTRGSRRVLKGVSISLEKGSITGLLGPSGSGKSTLIRSIAGVQKVESGTVTVLGRPAGSFAARASLGYMTQASAAYKDLTVRENVAHWARIARAPASAADEMISQLRLTDRAHALAADISGGQASRLSLACTMVGDPPVLLLDEPTVGLDPVLREEIWDLIRKRAAAGTTVLVSSHVMDEAQRCDSLVFIREGSILATGTADDILEETATSSMDAAFLALAKEQAE
>NZ_CP040503.1|WP_009197813.1|1610481_1611207_-|ABC-transporter-permease
MTLAIAARVARQLRHDPRTLALVTFVPSILVWLVHQIFDGEEPISSQVEMTLLAMFPLLLMFLLTAVATVRERSGGTLERLMAAPIRKMDVIGGYALAYGVLAIGQSSLLTAVCYWGLDMQLKGGIAWMLLVSLTTAMLGIALGLLASAVSRSEFQAVQFMPIVVVPQVLLCGLLGPREDMAGWLEGLSNAMPLTWAVEALQEVAEFPDLTGHYWTSLAIVAAFAAAALSLASLTLRRRTE
>NZ_CP040503.1|WP_083786090.1|1609882_1610659_-|TetR/AcrR-family-transcriptional-regulator
MARGPVERNAAHLGGRGVARGGGVPRSDGPLLDQSGHRRGIRSRRAQLGFAHPEAEDGVTRGRRRGSPATREQILDAARKVFDERGFRAASLRAVARTANVDPALVHYYFDSKVQLYTQSVGIGINPERVLAEVITPGRRGLGRRLMAFLTDLWESEVAQFVVESARENPALARQYAGVIVEQWRRAADILGFPHGIVREESLAQAIAVVAGVVTSKYLLELEPATSLTREQAIRVYGDLLQGVIDAAAAAEDPEAKK
>NZ_CP040503.1|WP_009197815.1|1609309_1609810_+|nucleoside-deaminase
MRCAKPRAAQGAPGHNGGVHEIEREWIGRAMELADRAALAGDVPVGALVVRGSAVLGVGWNTREARNDPAGHAEIAALREAAQAVGDWRLEGCDLYVTLEPCTMCAGAIVASRVARVVFGAWDPKAGAAGSVRDVLRDARLNHRVEVVGGVREDECSRQLRAFFGR
>NZ_CP040503.1|WP_009197816.1|1608533_1609172_-|uracil-phosphoribosyltransferase
MRTQIIEHPLVAHKLTLLRDRNTPSPVFRQLVDELVTLLAYEATRDVAVREIDVVTPVAPTKGLSLAYPRPILVPILRAGLGMLEGMSKLLPTAEIGFLGMKRDETTLEAHTYANRLPDDLSGRQCYVVDPMLATGHTLIDAVNYLLERGARDVTCVCLLAAPEGLRNLEEAIGDRADVTIVSAALDERLNENGYIVPGLGDAGDRLYGIVD
>NZ_CP040503.1|WP_009197817.1|1607453_1608491_-|alpha/beta-fold-hydrolase
MTAEIPPAPASVRPPSPSDILSIRTDCLGPTWVATSFALSEDDGGSPPGRPDVAVLVHEADAGDLAQKSGAAALYLPGFLDSFFHVEQAAAFREAGIPLAGLDMRRCGRSVRSNASRDDLRDIYVREEEIGLAIGRLRSLGAGRIALIGHSTGGLQAALWAADNPGTVDAVVLNSPWLDHNGGAFERGPLTRFIDRVGARRPRLVFSPLFLRYARALHTDFGGEFSFDPRHKPLRRAVARMGFIRTVRRAQARIAAGDVKIDVPLLVAHSDASSRRPRFPSRDDVAVRDAVLGVEDMKRLAPLLSERVDMLEIPGGRHDLALSAKPAREAYTRGVVDWVRKTLGL
>NZ_CP040503.1|WP_009197805.1|1617583_1618336_-|ABC-transporter-permease
MNMQLKALWSLYRRQLSTTVFYLPILVFTMFLPIMLFFMFGAFQEYSDNPAGDGNYAAKAMIGMCVYGAGMASATIGAQVGVERAQGWTRQLALTPVEPVTNFVNKLLLSITSALFSILAVLAVGCATTAEGPTRMWALSPILTLLGSLSTAAMGIMVGCLLRSDGAYGVILGGFAILAFFGDNFIPLDSMPSFFRDVAPFTPLYGITMIARWPLLQGTFEWTWAAGVAAWTVVFGIVSVRRMRTDTARR
>NZ_CP040503.1|WP_138587150.1|1618332_1619211_-|ATP-binding-cassette-domain-containing-protein
MVSAPTLSIENLVKAFGDVEAVRGVSLSISPGEVVAFLGPNGAGKTTTLDIVLGLSKPTSGAVALFGAAPRRAIKAGRVSAVLQTGGLLLDHTVENLVRMVADTFPNPLPWREVMDRTNLNEIAKRRVRKCSGGEQQRVRMALALLPDPSLIVLDEPTTGMDVTARRRFWDSMHAEAERGKTIVFATHYLAEAEMYAERTVIMNRGKIVADGPTNEIRGSFGAQTVTGRFPTKEAAKAAQASIGGRLEETSVSVTGPDVLALNRAMLDLPEIIGISVTDVSLEEAFEELTGE
>NZ_CP040503.1|WP_009197803.1|1619380_1619989_-|response-regulator-transcription-factor
MTIRIVVADDQALVRGAIAMMLDLEEDIEVVAQAGNGREAIEAVACGDVDVVLADVEMPVMDGIAAASRIRKEHPDVKILMVTTFGRPGYLRRAMEAGASGFVVKDAPSDSLASAVRKVMAGQRVVDPDLAAESLAASSNPLTEREQDVLRATSDGGTTADVSRSLFLSQGTVRNYLSSAIHKTGARTRAEAVVIARDNGWL
>NZ_CP040503.1|WP_050758752.1|1620072_1621464_-|two-component-sensor-histidine-kinase
MGRAGPFAVAPRRQERKRRPEGGLMEAQEVDGKRKADAHAIGDTRIDASTRTTDGEAAADAPRSSNEPRNALSANDANASRKKLADWARAHPKGLTMVYANVWLLFTLIPIIQGLLAENGIKKYLFLTLIVTFDIVYFRVWLVYPSVPTSERGFSPGLLDTIAALIALETMAAFFADGGNVQLLIFVSSVIAYTTSGRARALALAGLLVLGALQTILLVRLGKTSLQEGVTSFALLCVLTITFYAVGGTIAFQKELEIKNKRIKQLTQEAERERIGSDLHDILGQTLTAIALKTQLSARLLDMPDQRERTRRELLQAAALSHQALADVRAVVRDARRLRPDEEILAARELLCAAGITPVIRGEPVEVSEQAERVVAHVVREAVANVVHHAAATRCVIATWASGVRIEDDGVRLLDDAPKPTVKALASGLAGLDQRVREAGGVLSYGRLKRGWAVEARFDGGEP
>NZ_CP040503.1|WP_009197801.1|1621741_1622581_-|ABC-transporter-permease
MSAKKPSQEASAAHPGTTTGRPIRAARPAPSRRPLHGLWPLLRHQFRHTVLYPSNLGFALLLPVIMYFMFGAFQSYSSAWRGHSNVSAQVMFSMGAYGATMAAASIAAGVGIERASGWSRQLALTPTTSATYLVNKILLALASALLSLLGLMAVGFLCGAKAEGPMWVAVPGLIIFGSLVTANMGLALGYLFRSDAAYAIIGGGSAIFAFLAGVWVPLDNMPEFFRDFAPYTPMYGLFHFSQWPLKDAPFNWAWIVNIAVWTAFFAAIAIRRIRKDTAR
>NZ_CP040503.1|WP_009197800.1|1622582_1623554_-|ABC-transporter-ATP-binding-protein
MSTASSPARRTSRDHASGVEPALVVEDVHKSFGKVRAVDGVSFTVDRGEIVALLGPNGAGKTTTLDMVLDLSRPDAGSISVFGGNPRKAIDDGRLSALLQSGGLLREYTVYEIVAMVSGMLTASRPIGEILERTNLTEIAKRQIGKCSGGEQQRVRFALALLSNPEFIILDEPTAGMDVNARRHFWEAMHAEAEGGTTIIFATHYLAEAEAFAPRTIIMNRGKIVADGGTAQIRHNFGTQHIKLTFDTQENLAAASAYMARRATVSRSTETLSISGPDTVALVREVIAFPGISSISITDQSLEEAFEQLTDVGDEAAVSPKES
>NZ_CP040503.1|WP_009197798.1|1623757_1624885_+|3-dehydroquinate-synthase
MENTEFRVELVRLVDESYPVVVGRGLEGSVAEFLADKHPDRRAAVITDSNVASLAAEGLLSSFGSRPAELVVFPAGEASKTREVKERVEDELIARGFGRDTVIVALGGGVVTDLAGFVAATFTRGVPYVSLTTTLLGAADAAIGGKTAVDTPAATNLIGAFHQPAAVFIDLDRWLTLSDRQIREGLGETVKHACIADAVFFEALEDAFVERGLSPAEFVRDDALAELTARRNCEIKRDFVTSDVHEGNRRMGLNLGHTIGRALETAAGYTLNHGECVAIGLALQSRLGERLGYCSPSDVARIEALLRAIGLPTKIPEEVPVDRIMEAMAHDKKGKAGAIRFVFQDGVGRLVVHDGGSYARPVAAEDVRAFLQSQV
>NZ_CP040503.1|WP_009197797.1|1624911_1627980_-|hypothetical-protein
MDTPHKQGQDADGAIEALVARFDLLLGKLDSISSSMARIEDAVVPAPPLVGVGPTEARDDAASHDRASLEAAPPEAAAFEETADRTGPEQGAGRPGDTRLPDGASRPGDADQAGGKDREGDRTSADAKIGGLSFPETTAYVAVPGSHARPDAITARYVVETPHDPYLEGSAASAASAASASAASGSAVSAASANESCEFPDDAPAVETAGGEPVDVQAAGGEPIDAGQTGEGRVEPAEGGISGWGVDGPFDKWANYRGGSVGEAAAPPFGNEGPAFEAPPAGPIERPAFEAPPAKQSLWKRIGGEKQLGRYLLSLAASLLILMAAASLVALLWNAVPHYVKILIIGVVAAALTGVGTWLSLRPGSNKVAAATVMGTGGGLGFVAIIGGVLLGGTIPPEAAILLLTAWSIVLILLAGKARTFFAALIVGAGGIVTVILARTFAYDNLAQAPKATWAIFLYVASLTLVCGFVARKEASYKLRTAYAAIALAVTAAGLAATPYVVAATVSPVSSSAALLATLAWTLGVYAMVSHWAIAAWPVYSDALCAGWFAGCLAAVQVFSAMRNAPLPTDDEPWALLALLGAVVAATLVVSFLPLNARSSAYAGLSASATAVTLGVADLFIVRGSSLERDVHPALQLIVVGAVALSAVPTVRRRSAEHAVIMPATLLLFEIQRPGGTAREFLSLLAAAITVGVVLVVSSRASNRPVLIASSWALAVAVVGAVPVHLLRLASAAGLQDEWRLVLHIALVNLAVALLIYAGLPTSKFTPTELLCGKGRGERPPFTRVIVMQTVDRGNPKVVVKPTTMLLLTPVCICLGVLCYECLAVLLVRDAASPPAKAVFLATLLALNMALTWMAWPAAGNVVGSAVVAANTTIGVVGGFFLFGGVSGGSSVFGTIAFLTAGIVCVLIGFIARGKALRIYGLGLIMVMVLRFAIADMAGQNSLVRIVSLLVAGLVCFGLSLAYARFSSIFDGGDEGDRRADGGDQAGGSANAYGYGPSADAAAPAPRGPEFGEGSSYSVEIG
>NZ_CP040503.1|WP_040322945.1|1628488_1628845_-|glyoxalase
MELAKAAHNRIDFVEFPAPDREALRQAQEFYTRTFGWKYQKWGEDYIDTADSGVGSGLASDEPTSAPLAVVYVVDLEHTRKEVERNGGVIVRDIFSFPGGRRFHFKDPAGNELAAWSE
>NZ_CP040503.1|WP_009197794.1|1629109_1630171_-|hypothetical-protein
MSKEANNDSPTPFSGLGLIQEGQALAERIEGQSWVSPSLNSLSPGGGSGSFSMGPVELLSSLGASWLLDHLSPLKDWLDQLASDPTQTENFAQAWNSVADSLQSNADDLLRSIHADVSPLDGTTVSTYSDLQSDVAKHVDLAGTCSHALSTGLTVASNLVVTVHNTISEAIGEIVSSVVDRSDEFAVSLQTTMPKVITEVSSLSLEWANKMRRNLDDLLNSTQELAKMTKETEDLFKRLHTAMASVNGGNNNDPSSDSSPHSSDRVSIGESAEQENAPAAEEAGASGASENAAESGSGGLGGGQSMREGIDAGRQSLGSLDSEAGPDAETDRGTLDPDDDGGRPFVPKGRHSL

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Crispr_ID: NZ_CP040503_21

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040503_21

1621517-1621602

Orphan

Consensus_repeat	Method
CCGCCGGCGTGCCCCCGGGCGCAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040503_21

>merge|NZ_CP040503|21|1621517-1621602|CRISPRCasFinder
CCGCCGGCGTGCCCCCGGGCGCAGGCCATGATCGCGTCAAGGAAACTGACGGCCGCTTTCTCCGCCGGCGTGCCCCCGGGCGCAGG

>NZ_CP040503|21|20|1621517-1621602|CRISPRCasFinder
CCGCCGGCGTGCCCCCGGGCGCAGG	CCATGATCGCGTCAAGGAAACTGACGGCCGCTTTCT
CCGCCGGCGTGCCCCCGGGCGCAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040503.1\|WP_040322945.1\|1628488_1628845_-\|glyoxalase	unknown	unknown	gnl\|CDD\|319911
NZ_CP040503.1\|WP_040322940.1\|1632049_1632997_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|277331
NZ_CP040503.1\|WP_009197794.1\|1629109_1630171_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_138587150.1\|1618332_1619211_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP040503.1\|WP_050758752.1\|1620072_1621464_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP040503.1\|WP_138587151.1\|1631099_1631519_-\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|376829
NZ_CP040503.1\|WP_009197806.1\|1614895_1617364_-\|HAD-IC-family-P-type-ATPase	unknown	unknown	gnl\|CDD\|319795
NZ_CP040503.1\|WP_009197813.1\|1610481_1611207_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|272861
NZ_CP040503.1\|WP_009197797.1\|1624911_1627980_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378390
NZ_CP040503.1\|WP_009197812.1\|1611203_1611917_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP040503.1\|WP_009197798.1\|1623757_1624885_+\|3-dehydroquinate-synthase	unknown	unknown	gnl\|CDD\|341474
NZ_CP040503.1\|WP_009197800.1\|1622582_1623554_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP040503.1\|WP_138587149.1\|1613915_1614212_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009197805.1\|1617583_1618336_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223912
NZ_CP040503.1\|WP_138587148.1\|1612826_1613903_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009197803.1\|1619380_1619989_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP040503.1\|WP_009197807.1\|1614208_1614799_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274698
NZ_CP040503.1\|WP_138587261.1\|1630489_1630924_-\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|376829
NZ_CP040503.1\|WP_009197793.1\|1630163_1630481_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009197801.1\|1621741_1622581_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925

Protein	Function_ID	Function_description	E-value
NZ_CP040503.1\|WP_040322945.1\|1628488_1628845_-\|glyoxalase	gnl\|CDD\|319911	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a streptomycin resistance protein.	7.883e-17
NZ_CP040503.1\|WP_040322940.1\|1632049_1632997_-\|hypothetical-protein	gnl\|CDD\|277331	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	4.77256e-37
NZ_CP040503.1\|WP_138587150.1\|1618332_1619211_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.73599e-74
NZ_CP040503.1\|WP_050758752.1\|1620072_1621464_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.67078e-28
NZ_CP040503.1\|WP_138587151.1\|1631099_1631519_-\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|376829	pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding family. This is a family of DNA-binding proteins. Members of this family form homodimers which bind DNA via a tweezer-like structure. The conformation of the DNA is changed when bound to these proteins. In bacteria, these proteins may play a role in DNA replication-recovery following DNA damage.	0.000238505
NZ_CP040503.1\|WP_009197806.1\|1614895_1617364_-\|HAD-IC-family-P-type-ATPase	gnl\|CDD\|319795	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7. This subfamily contains P-type ATPase transporters of unknown function, similar to Streptococcus pneumoniae Exp7. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids. They are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle. A general characteristic of P-type ATPases is a bundle of transmembrane helices which make up the transport path, and three domains on the cytoplasmic side of the membrane. Members include pumps that transport various light metal ions, such as H(+), Na(+), K(+), Ca(2+), and Mg(2+), pumps that transport indispensable trace elements, such as Zn(2+) and Cu(2+), pumps that remove toxic heavy metal ions, such as Cd(2+), and pumps such as aminophospholipid translocases which transport phosphatidylserine and phosphatidylethanolamine.	0
NZ_CP040503.1\|WP_009197813.1\|1610481_1611207_-\|ABC-transporter-permease	gnl\|CDD\|272861	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family. The seed members for this model are a paralogous family of Mycobacterium tuberculosis. Nearly all proteins scoring above the noise cutoff are from high-GC Gram-positive organisms. The members of this paralogous family of efflux proteins are all found in operons with ATP-binding chain partners. They are related to a putative daunorubicin resistance efflux protein of Streptomyces peucetius. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.	8.30372e-26
NZ_CP040503.1\|WP_009197797.1\|1624911_1627980_-\|hypothetical-protein	gnl\|CDD\|378390	pfam10101, DUF2339, Predicted membrane protein (DUF2339). This domain, found in various hypothetical bacterial proteins, has no known function.	3.65746e-12
NZ_CP040503.1\|WP_009197812.1\|1611203_1611917_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.5483e-75
NZ_CP040503.1\|WP_009197798.1\|1623757_1624885_+\|3-dehydroquinate-synthase	gnl\|CDD\|341474	cd08195, DHQS, Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol condensation. The binding of substrates and ligands induces domain conformational changes. In some fungi and protozoa, this domain is fused with the other four domains in shikimate pathway and forms a penta-domain AROM protein, which catalyzes steps 2-6 in the shikimate pathway.	1.69945e-145
NZ_CP040503.1\|WP_009197800.1\|1622582_1623554_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	3.65862e-75
NZ_CP040503.1\|WP_009197805.1\|1617583_1618336_-\|ABC-transporter-permease	gnl\|CDD\|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	1.50423e-05
NZ_CP040503.1\|WP_009197803.1\|1619380_1619989_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.01857e-64
NZ_CP040503.1\|WP_009197807.1\|1614208_1614799_+\|hypothetical-protein	gnl\|CDD\|274698	TIGR03648, Na_symport_lg, probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.	0.000295708
NZ_CP040503.1\|WP_138587261.1\|1630489_1630924_-\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|376829	pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding family. This is a family of DNA-binding proteins. Members of this family form homodimers which bind DNA via a tweezer-like structure. The conformation of the DNA is changed when bound to these proteins. In bacteria, these proteins may play a role in DNA replication-recovery following DNA damage.	0.000248424
NZ_CP040503.1\|WP_009197801.1\|1621741_1622581_-\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	8.33574e-09

>NZ_CP040503.1|WP_050758752.1|1620072_1621464_-|two-component-sensor-histidine-kinase
MGRAGPFAVAPRRQERKRRPEGGLMEAQEVDGKRKADAHAIGDTRIDASTRTTDGEAAADAPRSSNEPRNALSANDANASRKKLADWARAHPKGLTMVYANVWLLFTLIPIIQGLLAENGIKKYLFLTLIVTFDIVYFRVWLVYPSVPTSERGFSPGLLDTIAALIALETMAAFFADGGNVQLLIFVSSVIAYTTSGRARALALAGLLVLGALQTILLVRLGKTSLQEGVTSFALLCVLTITFYAVGGTIAFQKELEIKNKRIKQLTQEAERERIGSDLHDILGQTLTAIALKTQLSARLLDMPDQRERTRRELLQAAALSHQALADVRAVVRDARRLRPDEEILAARELLCAAGITPVIRGEPVEVSEQAERVVAHVVREAVANVVHHAAATRCVIATWASGVRIEDDGVRLLDDAPKPTVKALASGLAGLDQRVREAGGVLSYGRLKRGWAVEARFDGGEP
>NZ_CP040503.1|WP_009197803.1|1619380_1619989_-|response-regulator-transcription-factor
MTIRIVVADDQALVRGAIAMMLDLEEDIEVVAQAGNGREAIEAVACGDVDVVLADVEMPVMDGIAAASRIRKEHPDVKILMVTTFGRPGYLRRAMEAGASGFVVKDAPSDSLASAVRKVMAGQRVVDPDLAAESLAASSNPLTEREQDVLRATSDGGTTADVSRSLFLSQGTVRNYLSSAIHKTGARTRAEAVVIARDNGWL
>NZ_CP040503.1|WP_138587150.1|1618332_1619211_-|ATP-binding-cassette-domain-containing-protein
MVSAPTLSIENLVKAFGDVEAVRGVSLSISPGEVVAFLGPNGAGKTTTLDIVLGLSKPTSGAVALFGAAPRRAIKAGRVSAVLQTGGLLLDHTVENLVRMVADTFPNPLPWREVMDRTNLNEIAKRRVRKCSGGEQQRVRMALALLPDPSLIVLDEPTTGMDVTARRRFWDSMHAEAERGKTIVFATHYLAEAEMYAERTVIMNRGKIVADGPTNEIRGSFGAQTVTGRFPTKEAAKAAQASIGGRLEETSVSVTGPDVLALNRAMLDLPEIIGISVTDVSLEEAFEELTGE
>NZ_CP040503.1|WP_009197805.1|1617583_1618336_-|ABC-transporter-permease
MNMQLKALWSLYRRQLSTTVFYLPILVFTMFLPIMLFFMFGAFQEYSDNPAGDGNYAAKAMIGMCVYGAGMASATIGAQVGVERAQGWTRQLALTPVEPVTNFVNKLLLSITSALFSILAVLAVGCATTAEGPTRMWALSPILTLLGSLSTAAMGIMVGCLLRSDGAYGVILGGFAILAFFGDNFIPLDSMPSFFRDVAPFTPLYGITMIARWPLLQGTFEWTWAAGVAAWTVVFGIVSVRRMRTDTARR
>NZ_CP040503.1|WP_009197806.1|1614895_1617364_-|HAD-IC-family-P-type-ATPase
MTSAQSLTDVKEPSGVQGLTGSEVAQRIQQGKVNTLPPRSGRSALDIVRANVFTRVNALLGVLFVLVMTTGSWVNGAFGLLIIANSAVGIVQELRAKHTLDSLAVVGEAHPTVRRNGKETQIERDEVVEDDVVVVGPGEQIVVDGAVVESAYLEVDESLLTGESDPIAKKPGDEIMSGSFVASGTGAYRATKVGADSYAAKLTAEAAKFSLVHSELQSGIDKILKAITWVLVPLGILTVISQTRIEQNDWRQVVIKVTGALVPMIPEGLILTTSVAFALGVVRLGMRKCLVNELPAIEGLARVDVVCADKTGTLTENAMSFGRVETIGSHSQDEALEALRQLGAADDSPNSSMTAIIEGVGRPQAAWEVSERQPFTSAKKWSGISFAAGEGSAARNVVLGAPDILAPDVARAQEIASTGLRVLLLGYAQTNVTAHDAPGEVDPLALVVLEQKVRPDAADTLEFFHSQGVQVKVISGDNADSVGAVTRSLGMDSGQPVDARTILEADFNKVVNERQVFGRVTPQQKRAMVSALQSAGHTVAMTGDGVNDVLALKDADLGVAMGSGTAATRSVAKIVLLDDKFATLPYVVREGRRVLGNIERVANLFLTKTVYSAIIAMLTVIFAVKAPFQPIHVTITGWFTIGVPAFILSLPPNNERARPGFVRRVLGFGFPAGALVAIPSFITYTIALRSATQAQASTAALLALIVSSTWVLAIVARPYEWWKIALIVLPLVGYGLIFSVSALQKTFMLDSSNLGVMALAAAVGGCGAVAIELLWWFTPGHPAYWMPKAERYAAAAQRRIEREALRQERAQRQESTQRHEDA
>NZ_CP040503.1|WP_009197807.1|1614208_1614799_+|hypothetical-protein
MKAESGARDARPQDDDGRESRGASETEAPGAVPSSGRTGRSRLALSVVAVIVGIPGFVAAGAGFPNVKTVAFGATSLIIASVIGCFALVWKANRRDAIMSAMLLAGALGLAFTAVYALIHYREIHEISIRGDSSPSARKQALALICGPVMVGLWFLLLGLGAMRKARKKGGGDKREPEARERQKQEQGTEENRRQS
>NZ_CP040503.1|WP_138587149.1|1613915_1614212_+|hypothetical-protein
MTNQDNPKPVLPSIPAGSPMDDALRGSLRKMKNDADPQIRRLIDDILAGKRTMRDLAATEWFGRRVREARPNLEAIRKEVEKLEKEPGAADRITEKPE
>NZ_CP040503.1|WP_138587148.1|1612826_1613903_+|hypothetical-protein
MADVKVDLDSLGYLSGSYRGLSDTVSSAQTYQSTHINLNASGKVSGVSTAVLDQAKKVEDALTTWLSDTEKATSGSADCVDDCVRSYQENERVSAELFDGHYTPADVASARSGASSTASGKLTTPAAQKTFATVFNAIGMVGNSISPSYWLGTAADAVLDLILGQGEHDPFAAIGNTIAGDWEPFSVASDALSKMSDYFKELGTETKNYWNNVDPDWDGGASDAASDALGKMGTSFDDASERLTKFSSSYNAVAVGVYDTADTLAGLLRTLADWGIAAVASAAAGTATFETVVGPIVGYVAAGAAVLKVLSTVREIFDVLGKVWDFVTLFTGQCSLWLGLVHGSGDPLTIYKPSFSEQ
>NZ_CP040503.1|WP_009197812.1|1611203_1611917_-|ABC-transporter-ATP-binding-protein
MNEAIVIDDLEVTRGSRRVLKGVSISLEKGSITGLLGPSGSGKSTLIRSIAGVQKVESGTVTVLGRPAGSFAARASLGYMTQASAAYKDLTVRENVAHWARIARAPASAADEMISQLRLTDRAHALAADISGGQASRLSLACTMVGDPPVLLLDEPTVGLDPVLREEIWDLIRKRAAAGTTVLVSSHVMDEAQRCDSLVFIREGSILATGTADDILEETATSSMDAAFLALAKEQAE
>NZ_CP040503.1|WP_009197813.1|1610481_1611207_-|ABC-transporter-permease
MTLAIAARVARQLRHDPRTLALVTFVPSILVWLVHQIFDGEEPISSQVEMTLLAMFPLLLMFLLTAVATVRERSGGTLERLMAAPIRKMDVIGGYALAYGVLAIGQSSLLTAVCYWGLDMQLKGGIAWMLLVSLTTAMLGIALGLLASAVSRSEFQAVQFMPIVVVPQVLLCGLLGPREDMAGWLEGLSNAMPLTWAVEALQEVAEFPDLTGHYWTSLAIVAAFAAAALSLASLTLRRRTE
>NZ_CP040503.1|WP_009197801.1|1621741_1622581_-|ABC-transporter-permease
MSAKKPSQEASAAHPGTTTGRPIRAARPAPSRRPLHGLWPLLRHQFRHTVLYPSNLGFALLLPVIMYFMFGAFQSYSSAWRGHSNVSAQVMFSMGAYGATMAAASIAAGVGIERASGWSRQLALTPTTSATYLVNKILLALASALLSLLGLMAVGFLCGAKAEGPMWVAVPGLIIFGSLVTANMGLALGYLFRSDAAYAIIGGGSAIFAFLAGVWVPLDNMPEFFRDFAPYTPMYGLFHFSQWPLKDAPFNWAWIVNIAVWTAFFAAIAIRRIRKDTAR
>NZ_CP040503.1|WP_009197800.1|1622582_1623554_-|ABC-transporter-ATP-binding-protein
MSTASSPARRTSRDHASGVEPALVVEDVHKSFGKVRAVDGVSFTVDRGEIVALLGPNGAGKTTTLDMVLDLSRPDAGSISVFGGNPRKAIDDGRLSALLQSGGLLREYTVYEIVAMVSGMLTASRPIGEILERTNLTEIAKRQIGKCSGGEQQRVRFALALLSNPEFIILDEPTAGMDVNARRHFWEAMHAEAEGGTTIIFATHYLAEAEAFAPRTIIMNRGKIVADGGTAQIRHNFGTQHIKLTFDTQENLAAASAYMARRATVSRSTETLSISGPDTVALVREVIAFPGISSISITDQSLEEAFEQLTDVGDEAAVSPKES
>NZ_CP040503.1|WP_009197798.1|1623757_1624885_+|3-dehydroquinate-synthase
MENTEFRVELVRLVDESYPVVVGRGLEGSVAEFLADKHPDRRAAVITDSNVASLAAEGLLSSFGSRPAELVVFPAGEASKTREVKERVEDELIARGFGRDTVIVALGGGVVTDLAGFVAATFTRGVPYVSLTTTLLGAADAAIGGKTAVDTPAATNLIGAFHQPAAVFIDLDRWLTLSDRQIREGLGETVKHACIADAVFFEALEDAFVERGLSPAEFVRDDALAELTARRNCEIKRDFVTSDVHEGNRRMGLNLGHTIGRALETAAGYTLNHGECVAIGLALQSRLGERLGYCSPSDVARIEALLRAIGLPTKIPEEVPVDRIMEAMAHDKKGKAGAIRFVFQDGVGRLVVHDGGSYARPVAAEDVRAFLQSQV
>NZ_CP040503.1|WP_009197797.1|1624911_1627980_-|hypothetical-protein
MDTPHKQGQDADGAIEALVARFDLLLGKLDSISSSMARIEDAVVPAPPLVGVGPTEARDDAASHDRASLEAAPPEAAAFEETADRTGPEQGAGRPGDTRLPDGASRPGDADQAGGKDREGDRTSADAKIGGLSFPETTAYVAVPGSHARPDAITARYVVETPHDPYLEGSAASAASAASASAASGSAVSAASANESCEFPDDAPAVETAGGEPVDVQAAGGEPIDAGQTGEGRVEPAEGGISGWGVDGPFDKWANYRGGSVGEAAAPPFGNEGPAFEAPPAGPIERPAFEAPPAKQSLWKRIGGEKQLGRYLLSLAASLLILMAAASLVALLWNAVPHYVKILIIGVVAAALTGVGTWLSLRPGSNKVAAATVMGTGGGLGFVAIIGGVLLGGTIPPEAAILLLTAWSIVLILLAGKARTFFAALIVGAGGIVTVILARTFAYDNLAQAPKATWAIFLYVASLTLVCGFVARKEASYKLRTAYAAIALAVTAAGLAATPYVVAATVSPVSSSAALLATLAWTLGVYAMVSHWAIAAWPVYSDALCAGWFAGCLAAVQVFSAMRNAPLPTDDEPWALLALLGAVVAATLVVSFLPLNARSSAYAGLSASATAVTLGVADLFIVRGSSLERDVHPALQLIVVGAVALSAVPTVRRRSAEHAVIMPATLLLFEIQRPGGTAREFLSLLAAAITVGVVLVVSSRASNRPVLIASSWALAVAVVGAVPVHLLRLASAAGLQDEWRLVLHIALVNLAVALLIYAGLPTSKFTPTELLCGKGRGERPPFTRVIVMQTVDRGNPKVVVKPTTMLLLTPVCICLGVLCYECLAVLLVRDAASPPAKAVFLATLLALNMALTWMAWPAAGNVVGSAVVAANTTIGVVGGFFLFGGVSGGSSVFGTIAFLTAGIVCVLIGFIARGKALRIYGLGLIMVMVLRFAIADMAGQNSLVRIVSLLVAGLVCFGLSLAYARFSSIFDGGDEGDRRADGGDQAGGSANAYGYGPSADAAAPAPRGPEFGEGSSYSVEIG
>NZ_CP040503.1|WP_040322945.1|1628488_1628845_-|glyoxalase
MELAKAAHNRIDFVEFPAPDREALRQAQEFYTRTFGWKYQKWGEDYIDTADSGVGSGLASDEPTSAPLAVVYVVDLEHTRKEVERNGGVIVRDIFSFPGGRRFHFKDPAGNELAAWSE
>NZ_CP040503.1|WP_009197794.1|1629109_1630171_-|hypothetical-protein
MSKEANNDSPTPFSGLGLIQEGQALAERIEGQSWVSPSLNSLSPGGGSGSFSMGPVELLSSLGASWLLDHLSPLKDWLDQLASDPTQTENFAQAWNSVADSLQSNADDLLRSIHADVSPLDGTTVSTYSDLQSDVAKHVDLAGTCSHALSTGLTVASNLVVTVHNTISEAIGEIVSSVVDRSDEFAVSLQTTMPKVITEVSSLSLEWANKMRRNLDDLLNSTQELAKMTKETEDLFKRLHTAMASVNGGNNNDPSSDSSPHSSDRVSIGESAEQENAPAAEEAGASGASENAAESGSGGLGGGQSMREGIDAGRQSLGSLDSEAGPDAETDRGTLDPDDDGGRPFVPKGRHSL
>NZ_CP040503.1|WP_009197793.1|1630163_1630481_-|hypothetical-protein
MQVDPSALSGHAAKIAEISTSVGGSTSALTSTSLTGQAFGDLCSFLVSPFELAKKEADAVITASAAAIDVTVSDLRTTANSYETADSESTRGFRKLGEILGGTNV
>NZ_CP040503.1|WP_138587261.1|1630489_1630924_-|YbaB/EbfC-family-nucleoid-associated-protein
MVFEDFSGADSARRHLDAQIAAAEAKLQRAKELETKVRNLKGSASSRRGEVSVTVDSSGGLSDLKLTDAATAMTASDLAGLILETFHKAHRKVTESYVDIVNDEFGKDSPTARAAADEAWGRVTTDVADEDDNKKAVSNLWRRR
>NZ_CP040503.1|WP_138587151.1|1631099_1631519_-|YbaB/EbfC-family-nucleoid-associated-protein
MNGADSARRHLDTQIAAAEAKLQRAKELETKVRNLKGSASSRRGEVSVTVDSSGGLSDLKLTDAATTMTASDLAGLILETFHKAHRKVTESYVDIVNDEFGKDSPTARAAADEAWGRVTTDVADEDDNKKAVSNLWRRR
>NZ_CP040503.1|WP_040322940.1|1632049_1632997_-|hypothetical-protein
MGEQAAAAGSTASAPKASVVRQGDASDRPFSPPAQDAVSLGDGDPRRLRILHLSDIHLLAWQRRKLAWIEKLAGEDPDLLILTGDSIAHSAAVAPLLRTLSVFAGLPGLFVFGSNDYYPPRPKNPFTYFKAPSSHSHGGKVRELPWPEMRAGFESFGWIDLNNRRTALTVNGIDVDAVGVDDPHIGLDKFPAVRTRPPGSKPRITIGLAHAPYARALDAMVDDGCSLVFAGHTHGGQVCVPGKGALVTNCDLPTTLVAGLYRWPDAGQVIRRDGAAVATHPGAWVNVSAGLGASPFAPVRLACRPEAIVLDVVFP

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Crispr_ID: NZ_CP040503_22

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040503_22

1766140-1766225

Orphan

Consensus_repeat	Method
CCCCAACCCGCCCGCGCGGCGTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040503_22

>merge|NZ_CP040503|22|1766140-1766225|CRISPRCasFinder
CCCCAACCCGCCCGCGCGGCGTCGTGGCCGCGTCGATCCGGGTCAAGCAGGCCCCCGAGGAACCCCAACCCGCCCGCGCGGCGTCG

>NZ_CP040503|22|21|1766140-1766225|CRISPRCasFinder
CCCCAACCCGCCCGCGCGGCGTCG	TGGCCGCGTCGATCCGGGTCAAGCAGGCCCCCGAGGAA
CCCCAACCCGCCCGCGCGGCGTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040503.1\|WP_040322371.1\|1757954_1758329_+\|cold-shock-domain-containing-protein	unknown	unknown	gnl\|CDD\|239905
NZ_CP040503.1\|WP_009197650.1\|1768019_1768940_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP040503.1\|WP_009197642.1\|1777405_1777906_-\|regulatory-protein,-FmdB-family	unknown	unknown	gnl\|CDD\|225210
NZ_CP040503.1\|WP_009197661.1\|1759105_1760341_+\|mannose-6-phosphate-isomerase,-class-I	unknown	unknown	gnl\|CDD\|185085
NZ_CP040503.1\|WP_009197652.1\|1766856_1767735_+\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|366353
NZ_CP040503.1\|WP_138587163.1\|1763923_1765153_-\|phosphoserine-transaminase	unknown	unknown	gnl\|CDD\|235103
NZ_CP040503.1\|WP_009197666.1\|1753847_1754588_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP040503.1\|WP_009197659.1\|1762431_1763808_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP040503.1\|WP_138587165.1\|1778947_1779142_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009197655.1\|1765270_1765993_+\|metal-dependent-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224240
NZ_CP040503.1\|WP_009197660.1\|1760570_1762070_+\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NZ_CP040503.1\|WP_009197649.1\|1769381_1769699_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223095
NZ_CP040503.1\|WP_009197665.1\|1754774_1755530_-\|PspA/IM30-family-protein	unknown	unknown	gnl\|CDD\|224755
NZ_CP040503.1\|WP_050758743.1\|1758312_1759104_+\|DUF3027-domain-containing-protein	unknown	unknown	gnl\|CDD\|378605
NZ_CP040503.1\|WP_083786084.1\|1755563_1757660_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377378
NZ_CP040503.1\|WP_009197646.1\|1770329_1775498_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380141
NZ_CP040503.1\|WP_083786083.1\|1776678_1777311_-\|SAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|212159
NZ_CP040503.1\|WP_138587164.1\|1775641_1775875_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009197640.1\|1778315_1778933_-\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|274270
NZ_CP040503.1\|WP_040322366.1\|1776148_1776598_-\|large-conductance-mechanosensitive-channel-protein-MscL	unknown	unknown	gnl\|CDD\|376605

Protein	Function_ID	Function_description	E-value
NZ_CP040503.1\|WP_040322371.1\|1757954_1758329_+\|cold-shock-domain-containing-protein	gnl\|CDD\|239905	cd04458, CSP_CDS, Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.	6.49396e-16
NZ_CP040503.1\|WP_009197650.1\|1768019_1768940_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	1.05077e-24
NZ_CP040503.1\|WP_009197642.1\|1777405_1777906_-\|regulatory-protein,-FmdB-family	gnl\|CDD\|225210	COG2331, COG2331, Uncharacterized protein conserved in bacteria [Function unknown].	5.51239e-24
NZ_CP040503.1\|WP_009197661.1\|1759105_1760341_+\|mannose-6-phosphate-isomerase,-class-I	gnl\|CDD\|185085	PRK15131, PRK15131, mannose-6-phosphate isomerase; Provisional.	9.55738e-92
NZ_CP040503.1\|WP_009197652.1\|1766856_1767735_+\|C40-family-peptidase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	4.91592e-22
NZ_CP040503.1\|WP_138587163.1\|1763923_1765153_-\|phosphoserine-transaminase	gnl\|CDD\|235103	PRK03080, PRK03080, phosphoserine transaminase.	1.74656e-131
NZ_CP040503.1\|WP_009197666.1\|1753847_1754588_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.64453e-80
NZ_CP040503.1\|WP_009197659.1\|1762431_1763808_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.13674e-71
NZ_CP040503.1\|WP_009197655.1\|1765270_1765993_+\|metal-dependent-transcriptional-regulator	gnl\|CDD\|224240	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription].	2.09882e-42
NZ_CP040503.1\|WP_009197660.1\|1760570_1762070_+\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	7.69949e-120
NZ_CP040503.1\|WP_009197649.1\|1769381_1769699_-\|hypothetical-protein	gnl\|CDD\|223095	COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis].	0.00167209
NZ_CP040503.1\|WP_009197665.1\|1754774_1755530_-\|PspA/IM30-family-protein	gnl\|CDD\|224755	COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms].	9.0602e-18
NZ_CP040503.1\|WP_050758743.1\|1758312_1759104_+\|DUF3027-domain-containing-protein	gnl\|CDD\|378605	pfam11228, DUF3027, Protein of unknown function (DUF3027). This family of proteins with unknown function appears to be restricted to Actinobacteria.	3.27438e-114
NZ_CP040503.1\|WP_083786084.1\|1755563_1757660_-\|hypothetical-protein	gnl\|CDD\|377378	pfam04536, TPM_phosphatase, TPM domain. This family was first named TPM domain after its founding proteins: TLP18.3, Psb32 and MOLO-1. In Arabidopsis, this domain is called the thylakoid acid phosphatase -TAP - domain and has a Rossmann-like fold. In plants, the family resides in the thylakoid lumen attached to the outer membrane of the chloroplast/plastid. It is active in the photosystem II.	1.77693e-09
NZ_CP040503.1\|WP_009197646.1\|1770329_1775498_+\|hypothetical-protein	gnl\|CDD\|380141	pfam18741, MTES_1575, REase_MTES_1575. Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase and wHTH.	5.90753e-11
NZ_CP040503.1\|WP_083786083.1\|1776678_1777311_-\|SAF-domain-containing-protein	gnl\|CDD\|212159	cd11614, SAF_CpaB_FlgA_like, SAF domains of the flagella basal body P-ring formation protein FlgA and the flp pilus assembly CpaB. FlgA is a putative periplasmic chaperone that assists in the formation of the flagellar P ring; CpaB is a protein invoved in the assembly of the flp pili, which are bacterial virulence factors mediating non-specific adherence to surfaces; these proteins appear to contain a single SAF domain. This intermediate family also contains the SAF domains of sialic acid synthetases and type III antifreeze proteins, which also share the same extensive core structure.	9.79978e-08
NZ_CP040503.1\|WP_009197640.1\|1778315_1778933_-\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|274270	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism. [Central intermediary metabolism, One-carbon metabolism].	5.57444e-26
NZ_CP040503.1\|WP_040322366.1\|1776148_1776598_-\|large-conductance-mechanosensitive-channel-protein-MscL	gnl\|CDD\|376605	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL.	1.44699e-37

>NZ_CP040503.1|WP_009197655.1|1765270_1765993_+|metal-dependent-transcriptional-regulator
MSHLVDTAEMYLKAVYELEEEGIPPLRARLVERLEQSKPTVSETVARLERDGLMHVKNNRVVALTEEGKRQATRVMRKHRLAERLLLDVLGMPWSDVHEEACRWEHVMSDAVEERLETLLEHTDVDPYGNPIPGIEGVTSSAVQSDLHSVKDRVARGDLGEAVIVRIAEGVQTDPDFLGRLSAAGIVPGARVRIEDDGGRVTIAASGGGERPGEEESNKGAQRGREVKLSDWQQAHLFAR
>NZ_CP040503.1|WP_138587163.1|1763923_1765153_-|phosphoserine-transaminase
MNIEIPSELLPREGRFGSGPSRPRIGLPASLGGAEGLVGTSHRQAPVKALVRRIREGLAEFFDAPAGYEVILGNGGASLVWDAIAFTGVRRRAQAAVFGEFTRKAAAAAARAPWTDCSTVEAAAGEVALCDDGAAHRGRDGAEAGATGGGAAAEGLAAGLSRPSLPGADGLADTAEPEAVDAYMYAHNETSTGAMSPVRRFGRGQALTFVDATSSAGGVAVDVGETDLYYFSPQKCFGAEGGLWLALASPAALARFEKLAGERYVPDILNLHLAAANSRADQTLNTPSIVNLAILASQIDWMLESGGLAAMDARCRRSSGILYEWAERSDFAAPFVSPQWRSPVVVTIDIDEAIPADALRRVLRANGILDVDPYRSLGRNQLRVATFPNVEADDVEALTACVDYVAERM
>NZ_CP040503.1|WP_009197659.1|1762431_1763808_+|MFS-transporter
MGRTFASLKHRNYRIWFFASLIGNIGTWMQFIAQDWIVLAELTKDNAFAVGLVSALQLTPTMLFLPFTGLLVDRFDRRKILLMTQGALALLAAGLGALVLTGEVQVWHVAVFAFASGTAASVDMPSRAVFVSELVPAEDLPNAVGLNSTSFNLGRLVGPGASGLLIAAVGSGWVFLVNAATFGFTIAAVLAVRPSEYFTNSAGQGEPAREADSSASRRGRFREGLRYIRQRPDLAVIFVVAGTVSCLCMNYQLTSAAMARTVFGLEAGEYGILGSLLGAGSLGGALLAARRSRAPRVRTVAVAAALCGVTALVNAVMPTYASYAVSLVFVGFTALLLFTSANTAVQVSTAPEIRGRVMSLYQTVMIGTAPIGLFIAGWVCENVSPRWGVGIGAVAAFVVVLAAFVWGRRHWGVEVRYSFTPRPRVEIIGPVERERLREQELAREVASAQDRHTPGVVL
>NZ_CP040503.1|WP_009197660.1|1760570_1762070_+|NCS2-family-permease
MRDWCDVSTSQTTSDSASGSRQGVLDRYFHLNERGTSVWREIRGGVVTFFAMAYILVLNPIILSGTDSAGKYLGGGSKPDAAAIVAGTALVAGLMTILMGTVSNFPLALAAGLGLNSMVAGTIVKIPGMTWADGMGVIVIEGIVIVFLVLTGLREAIFRAVPKFLRTAISVGIGLFVTFVGLVNAGIVHKGGEGETALVFGVNGSVSTWPLVVFTLGLALTVVLMIRHVKGAILIGIVSTTVLAVAVEAVRHVGPHSGDNPGGWGLTVPSLKGSPVQTPDFSTLGEFSIAGPFAKIGVVAVVVLAFSVMLADFFDTMGTMVAVGAEGDLLDDAGNPPNTQRILLVDSLAAIAGGAGGVSSNTSYIESSTGVADGARTGLASVVTGVAFLLSTFFAPLAALVPNEAAAPALVAVGFLMMQQVAKIDWTDLGIAIPAFLTIVFMPFGYSITVGIGVGFICHCMVETARGRARKIHPLMWLVSALFVVYFLLDPIQRMLGLI
>NZ_CP040503.1|WP_009197661.1|1759105_1760341_+|mannose-6-phosphate-isomerase,-class-I
MLELRGRARPYQWGSTSAIPGLLGKPPAEGPVAEVWLGAHPDGPASVGVGTSIVDDSQLYPSRVPPGPPSQSLAEWIAQDPQAALGESVVERYGTSLPYLLKVIAPAEPLSLQVHPSIEQAEEGFAAEEAAGVPRSAPDRNYKDRNHKPELAYALTTFEALAGFRARRRIGEVLKGLDAPLAQRLRAVLGMGGVRGAFEYLLREQTRPSPEEVAEVAEACAARPAADSPSARADRVAAMLSERYPGDPGVVASLLMNPVTLNPGEALFLSAGTVHAYLSGVAVEIMAASDNVLRAGLTHKHVDVPELLAVLNSSASPPTRIAPERVNAAVSTFYAPVDDFELSEIRLRDANTRVRVRGIGPRTVLCLRGAAQLEAGGRVRSVIAGQAVFVPASDGQLTMRGIGHLVQAAVP
>NZ_CP040503.1|WP_050758743.1|1758312_1759104_+|DUF3027-domain-containing-protein
MISMPSAVVNPTSSAGKEKILFKAVEAARAALEDVANPEEIGEHAGVVVEAERLLTHAFACLKAGYRGWFWTVTVSRIPRSSRVTVNEVALRPGPDALLAPEWVPWSDRVEPSDVSPTDRLPYNADDSRLEPGFEQTGEDADQIDPFEMGLGRPRVLSKEGRDAAFTRWYKGDSGPDNPGTRQAQANCSTCGFLMPMGGSARLLFGVCANEWSPFDGKVVSFDHGCGAHSETDVSAEDQERMWDPAEPVVDEADMELAAGVRS
>NZ_CP040503.1|WP_040322371.1|1757954_1758329_+|cold-shock-domain-containing-protein
MPTGRVKFFDEKKGFGFIAGDDGTEVFFSGSALPVGSRVKAGTRVEFSVADTRRGPQALTVAPKAKVESLARKNRRKPEEMVAIIEDLIKILDKASNQLRHGRYPDGGRRIASALRRLADDFDA
>NZ_CP040503.1|WP_083786084.1|1755563_1757660_-|hypothetical-protein
MAGENQTVKKTNRHCPMRRLLAPSIALAGLVAVPAALAAPAFAEEPEELKSTVTDTAGVISNEKALRDALASTQDKTHKSVYIVFVKNFGSKTTDTWARDAFRKSGLSRSDSLIAVATETHRFSLFAGGSGYSVAELRKALDGSGVYDKWRSGDWAGGAKSVVSNLEENALKKEEADSEGAGESKGSGISGSTAALLIGVPAVGAGAAGGVYVWRRRKKGKELEAKNAEDLASLSKRAARQLLETDDGVRGAAAELEFARAEFGVEATKQFAEALASAQDSMQKAFVVRQELDDDIPETPQQQWEMNQRILALTASARESITAQEQGFQNLRNLSARVDQHLAELQTRADELDGQRDILVAEIDNLALTYSQAALATLRTYPDQIATLVTSARSSIASGRHSASEGKRNEAVAFARMAEETLGHAAAKAEEIKKAHGSLDDAFQKVHAALASISSDVVDAKRLGAGNPVIAAKQADAEKAIAAHSNGDVDPIKALSELAAAEDALDAALVDVRNADEIRKRKEEASQRNRGIAQQTIDRVEKIEGYGRYADQKARTLLATARENIAKGDSAQSPDAKDDYYKAAVSAADRAEDRVMDLRERDSHRYDYDARDGGGIGRTMGGMLAGMVLGSLFNGGNDDRHGGGFSTGSFFGGDSDDGGFSLGSFFGGDSDDGGGFDFGSGDGGGFDFDFGSGDGGSF
>NZ_CP040503.1|WP_009197665.1|1754774_1755530_-|PspA/IM30-family-protein
MAEKQTILGRITQLAKANINALLDRAENPQKMLDQMVRDYTNSIAEAQDAVAVTVGNLRLAQADYQEDVKASREWGQKALAASNKAEQMRLAGNEQDAAKFDNLAKIAISKQMASEKEAKDAEPLIASQEEVVAKLKDGLDQMRSKLDELKTKRNQLVARAKTAEAQNRVQDAISSINVLDPTSELGRYEDQIRRQEALAQGKAEVAVSSLDQQFAELEDHSQDIEIEARLAALKSGDAPAQIEARDFNAY
>NZ_CP040503.1|WP_009197666.1|1753847_1754588_-|response-regulator-transcription-factor
MTDSKLPEATVLVVDDEPSIRELLSASLRFAGFDVLSAADGKEALDHQAGAHLDLAVLDVMLPDMDGFTILRKLRERDAELPVLFLTARDDVKDKIQGLTVGGDDYITKPFSLEEVVARIRAVLRRTHPSDADAAVLTYGDLELNEETYDVRRAGQIVELSPTEFKLLRYLLINAERVVSKMQILDHVWDYNWNGEVSIVESYISYLRRKIDSAEALGITDPEEAKAIVPLIHTKRGIGYVLRNTK
>NZ_CP040503.1|WP_009197652.1|1766856_1767735_+|C40-family-peptidase
MTGRHSLNREVALSALNSPAGRSVAAAMAVGTMLGVALPSANADEGSANADLAPVTDLSADETITDTSAVKAPADANWQLEQVQVQDAQASDQPATAFQVSVQKKATPVAAQPAAAQQAGGTAQKAAGSQESGNAQGNIQQTNATITRGARPAAVNNVRQQQAAAPAAQAAPVAHTASGSGSSVLSTAMSYVGSPYRWGGTTPSGWDCIGFVRYVYGKFGVSIGGYTTSVLSAGTRVPYSQAQPGDILYWPGHVGIYAGNGQNVGAWNPSMGTRVGPNSWVGGTPTVIRVLH
>NZ_CP040503.1|WP_009197650.1|1768019_1768940_+|universal-stress-protein
MITVAYQHDNVVVCGVDGSDASFNALKWAAQEAKMRNAVLEILCCHQEPTYPGHRGNAGLTEDDARKVIDKALEKTADVGVDVQTSLEADDPTSALLARSKKVARVVVGARGGSGGFADRLLGSVASALSARAFCAAVVVPSTAARDVLPVEHIVCGVDGSETSKIALGLAVREAARWKAKLSCVSAINLSGSMWVPGPGYHQEVLDDVRAGLKDTVMKAAEGYDIDAHCHVIEGNPAALLAEFSTAVDMLVVGTRGRGGFAGLLLGSTSQAILHHSVCPTIIVPRRTSENEDAPWGNVPWSRTAK
>NZ_CP040503.1|WP_009197649.1|1769381_1769699_-|hypothetical-protein
MNGGSKQDDESLTAKLARLEKRVNDLEERLKRAEKYNELSQKTITSLLSTTKQLSLSGKELAHALDKLMDTTGKTLGAIHPLIPYLEKIRDREQMDEDLRRLFEK
>NZ_CP040503.1|WP_009197646.1|1770329_1775498_+|hypothetical-protein
MSPFFKRSRKNDKAAPAAESPAPSPEAAEADENRPSVSERAERSGKRSFIARKPREMKEPDLFAEAQPAPADDVDGPSRSERISRAYSDWHRELAVVADEAAVPIRAGDPAVVDLTHPHPTGASQLYSGKPTLLTSVIREESAQREAQAHLASLRTRMEGLSEQYGYAPVTLAIGHISWTELPAASSQGREKGGSPGASSGKALGRDAVEQMAIGAARADMHDVALGEELSGRPGAGGGAADDANGGDGGKGSTGNGEADVCDVAGAGSPGGGASEAHDDSPRPFGSASGDLANMPGKLASAPGERGKALEALESATFESTEELAATRSADSVEDGTSGSDAAAPKIREMYEAGLMRSARLDEAGPDDAYITLTARCDVNPTVLRALRSHGMTAEEGSRLRAMAADVARHEAAIAYLRELGRVYLPGFSYEDGALLGSFTHPGLVLLADLEAMKPYIETSGIMAALAGDEETRRLTALPLPPAEMRDRSPEAERGAGDRDPAELAVIEAIASGRSIVVDAPPGSQAVGTLAAIVADAAASGRSILYIPGRASSARALVDEMGRLGLGDLVLDFSDLDTVARRIRTGMRLRGDEEDPADVLELRARLVAVRRELSEYVASLHDVDPQWGHSVHSLLERLARLTEGKGAPRSRVRLDSDTVHALRGELSHVQAQLEDASELGAFVGMADSPWAGADIHTAAAGEEAMALAKKLASKTIPAVKAQAERAAEETGLSVAETFEDWREQIEMLRGISHSLDIFLPQIFERSVQDMVIATASKEWRESHGEEMKGSERRRLTKQAKDYVRPGAVSHDLHRDLITVQRQREVWKRYSAEASWPKLPEGMTQIRESEREAGGQLEELEGILPGRKLRMMPMGELLDFLLSLSMDEGTMSRLPRANELVAKLKAEGFGGVVKDFSERGVRTEQIPAELDLIYSASLFEQLVGRSPALSRTTPANLAVLAAEVRRLDREHTETLAGPVSRAVVRIMRETISKRREDTLKLDDQLERYSTGALRDAIATYPRLVQASRPVWVIPSMITAEFVPPMPWADIVIMDEQDAGGLSSAVSMLMRGRQIVVMGNLRRARAEGGDSTIAAFADILPVCELPTLRAQHDELATQTLREQGYADVLELVPSAKRGRKPSLVLVEGRGVPNPQSGMVEGPQVEVDAAVDAVVDHVLTRPGESLAVVCVSPAHAVRIREALARLAADSPQLAEFVSKGGVEPFAVLELTQTGGLRRDSIILTVGLGKTVHGRVLHTFGPLSTAGGLTGLVDAMEAARSELKIVSSLGPGEIGADRLSTPGPRLLEKLIDRADGREVPLDPSSSDEPIGALLTDLRDRLVRAGYAVASDFGFDDGVRIPLVAGDVELPGTWRVAVLVDDEAYVNEPSVRRRDRYWLERLESRGWAVIRTFSTSLFIDPEGQASLVVNAIKRARALELSDSVRVPVLGDEWAAPADGPGGEAVTGGKVVTEGEVVTSDENVAGGETIPGGETVTGGAALPRDPNWAEKLRNEAAVKRGPRPDVAKGLSLAAYTDDQLDEMVTWIAADGAERSRPEFVDALRKELGIEGRGMQVDTILGHVVDRSGLAVGLGLGDSGSDALSDSGPSPDAVSRLSGSSSSSEALSEAGSLPAPGSRSSSAAPQRSSEAAQHSSESALRSPEVSQRSPYSADPASEASSKTVSEGARSPSDSSKAASEAGRSASSASQSAPGAGRSASRSASRGKRK
>NZ_CP040503.1|WP_138587164.1|1775641_1775875_+|hypothetical-protein
MAGQSQAPKRKRRAAVRLSRVDAERLARGEIANPEEALHLNDLRETRSLQREESAVAARDANERRLLGDRPPHFGTL
>NZ_CP040503.1|WP_040322366.1|1776148_1776598_-|large-conductance-mechanosensitive-channel-protein-MscL
MIEGFKKFIMRGNVIELAVAVVIADAFSPIVNNLVGKVINPTIGGLFGKPNFNNIGEFHVGDATVQPGTVLTALIAFLLIAAAVYLALVFPMNKLNERMAKRKGLNAEEAEVSDEVRLLTEIRDALAGGGYMNGGGAAGGGYTGGGYRQ
>NZ_CP040503.1|WP_083786083.1|1776678_1777311_-|SAF-domain-containing-protein
MNLSRIRATLWKLRHMLLAVAVLTSLAAILSTIRGLAPATVSVVVAKKDLTPGTALGSSNLTIAEVSAELAPEGLTRSLEDLNERVLITSVPKGAPVTRKMTLSDDFLASAPEGTEIAPVVADVGGADKLLTPGRTVALYAPPGEHSKAREAVKIVDKATIVGVGPKNESTSFVSDSSHTSVLYVAVPQNTISLVIGYGSTMPMRVVVVR
>NZ_CP040503.1|WP_009197642.1|1777405_1777906_-|regulatory-protein,-FmdB-family
MPTYSYRCTECGNEFDVRQSFSDEPLKVCEACGGSLRKLFNSVGIVFKGSGFYHNDARSSSGTLHSKNSEGREASDSAGSRSGESASSENGNSGSHSGNANAHSQDAGSQSGSADSGRAAGSAGASTSTSASTSTGTSTSKRRGADPASGKRGTGSPSPKKVGSPA
>NZ_CP040503.1|WP_009197640.1|1778315_1778933_-|5-formyltetrahydrofolate-cyclo-ligase
MITKTVTLPNVADLDVEDAKQELRKVARKNRSKRSLQAREDFASTWVDTALDFLGDAQVVAAYVSIKEEPPTLALCDAIVASGKRLLLPKLGPGLTRAWGWYTGAHDLDVLAPGRPPEPSGEALGPEALSQVDALLVPALLIGRGGTRLGQGGGWYDRILKQIKDDARVGAMVYPDEVVDMELPQDEMDMRIPFVVLPEYWTSTE
>NZ_CP040503.1|WP_138587165.1|1778947_1779142_+|hypothetical-protein
MTTLGKDREIFGETRDVGTAEGPRCEACQVAVAPDERGTTPQSHCRKPLPTLKNPLRKYGEILC

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Crispr_ID: NZ_CP040503_23

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040503_23

1843318-1843410

Orphan

Consensus_repeat	Method
CCGACTGGCCTCCTTCGGTGCGGGTGGTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040503_23

>merge|NZ_CP040503|23|1843318-1843410|CRISPRCasFinder
CCGACTGGCCTCCTTCGGTGCGGGTGGTCGGCAAAGCCCAGGCCGATCCCGGCCCGCTCTCACCCGACTGGCCTCCTTCGGTGCGGGTGGTCG

>NZ_CP040503|23|22|1843318-1843410|CRISPRCasFinder
CCGACTGGCCTCCTTCGGTGCGGGTGGTCG	GCAAAGCCCAGGCCGATCCCGGCCCGCTCTCAC
CCGACTGGCCTCCTTCGGTGCGGGTGGTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040503.1\|WP_138587172.1\|1832901_1833636_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009199531.1\|1852003_1852873_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_082903057.1\|1846400_1847369_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379142
NZ_CP040503.1\|WP_009199527.1\|1854496_1855477_-\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238493
NZ_CP040503.1\|WP_009199537.1\|1844620_1846240_-\|trypsin-like-serine-protease	unknown	unknown	gnl\|CDD\|273938
NZ_CP040503.1\|WP_009199545.1\|1834685_1839155_-\|putative-DNA-helicase-related-protein	unknown	unknown	gnl\|CDD\|235906
NZ_CP040503.1\|WP_040323373.1\|1831909_1832128_-\|DUF2249-domain-containing-protein	unknown	unknown	gnl\|CDD\|370777
NZ_CP040503.1\|WP_050758808.1\|1841747_1842437_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235825
NZ_CP040503.1\|WP_040322872.1\|1841418_1841751_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_138587173.1\|1850917_1851751_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223390
NZ_CP040503.1\|WP_040322874.1\|1839388_1840120_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP040503.1\|WP_009199542.1\|1840361_1840877_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009199538.1\|1843644_1844454_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|274729
NZ_CP040503.1\|WP_082903056.1\|1842686_1843265_-\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NZ_CP040503.1\|WP_040322866.1\|1847564_1848272_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_138587174.1\|1852991_1853252_-\|DUF1540-domain-containing-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009199528.1\|1853595_1854483_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|369792
NZ_CP040503.1\|WP_040322877.1\|1833822_1834542_+\|MgtC/SapB-family-protein	unknown	unknown	gnl\|CDD\|224204
NZ_CP040503.1\|WP_040322878.1\|1832477_1832879_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380361
NZ_CP040503.1\|WP_040322862.1\|1855749_1857558_+\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237029

Protein	Function_ID	Function_description	E-value
NZ_CP040503.1\|WP_082903057.1\|1846400_1847369_-\|hypothetical-protein	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	6.61969e-16
NZ_CP040503.1\|WP_009199527.1\|1854496_1855477_-\|isochorismatase-family-protein	gnl\|CDD\|238493	cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).	7.84203e-57
NZ_CP040503.1\|WP_050758808.1\|1841747_1842437_-\|hypothetical-protein	gnl\|CDD\|235825	PRK06547, PRK06547, hypothetical protein; Provisional.	7.93532e-21
NZ_CP040503.1\|WP_009199545.1\|1834685_1839155_-\|putative-DNA-helicase-related-protein	gnl\|CDD\|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	1.60198e-13
NZ_CP040503.1\|WP_040323373.1\|1831909_1832128_-\|DUF2249-domain-containing-protein	gnl\|CDD\|370777	pfam10006, DUF2249, Uncharacterized conserved protein (DUF2249). Members of this family of hypothetical bacterial proteins have no known function.	1.82335e-15
NZ_CP040503.1\|WP_009199537.1\|1844620_1846240_-\|trypsin-like-serine-protease	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	2.62467e-48
NZ_CP040503.1\|WP_138587173.1\|1850917_1851751_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	5.01915e-101
NZ_CP040503.1\|WP_040322874.1\|1839388_1840120_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	1.78295e-06
NZ_CP040503.1\|WP_009199538.1\|1843644_1844454_+\|alpha/beta-hydrolase	gnl\|CDD\|274729	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	2.10596e-17
NZ_CP040503.1\|WP_082903056.1\|1842686_1843265_-\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	9.07914e-16
NZ_CP040503.1\|WP_009199528.1\|1853595_1854483_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	4.18714e-55
NZ_CP040503.1\|WP_040322877.1\|1833822_1834542_+\|MgtC/SapB-family-protein	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	2.307e-44
NZ_CP040503.1\|WP_040322878.1\|1832477_1832879_+\|cupin-domain-containing-protein	gnl\|CDD\|380361	cd02233, cupin_HNL-like, Granulicella tundricola hydroxynitrile lyase (GtHNL) and related proteins, cupin domain. This family includes archaeal, eukaryotic, and bacterial proteins homologous to hydroxynitrile lyase from Granulicella tundricola (GtHNL), a novel class of HNLs that does not show any sequence or structural similarity to any other HNL and does not contain conserved motifs typical of HNLs. HNLs comprise a diverse group of enzymes that vary in terms of their substrate specificity, enantioselectivity and the need for a co-factor. In plants, they catalyze the reversible cleavage of cyanohydrins, yielding HCN and aldehydes or ketones. Also included in this family is TM1010 from Thermotoga maritima, a protein of unknown function. Some but not all members of this family have N- or C-terminal carboxymuconolactone decarboxylase domains in addition to the cupin domain. Members of this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	1.63398e-45
NZ_CP040503.1\|WP_040322862.1\|1855749_1857558_+\|methionine--tRNA-ligase	gnl\|CDD\|237029	PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.	0

>NZ_CP040503.1|WP_082903056.1|1842686_1843265_-|flavodoxin-family-protein
MRAASAGQPLDLQAAERPAVGKDLQRVEGGRMPRKYLFINASAKKDGSTVECGTALLEGLESEQIHLVDYRIGFFGQSFDDDEFDAVLEKMLAADVIVLGSPVYTETMSAAARTLLERLETHPRAEELSGREFAYFIQGYGPTRLAVESTTASVRNAVEPRGARFLGAASDMVELAELREAIDSQEAEASHE
>NZ_CP040503.1|WP_050758808.1|1841747_1842437_-|hypothetical-protein
MPESYPIRVSSAEAPRFIRTLTDKHRRAGEHRRTAEPASGTPTDSGKPTASGTPTDSGTPTDSTASRPTFVVAIDGKSGAGKTTLAGKLEKELCEEGIAAAAIEVESFIGGWNGLIDGVEAVASRILEPVRSRGSATARTWDWNRGAWADEVRIPQSGPVDVLILTGCGAASAPCRPFVDVSVWVELDEERRRERVARREGDPGRWWLMWAEQEDLLPRSGAPDVVVAD
>NZ_CP040503.1|WP_040322872.1|1841418_1841751_+|hypothetical-protein
MTPWRWTAYCLFTFALAVLAFRFAVDPPHVLAVGVAVVVLGVLALVFALNSENNGGPLSSRGNDVLAALGWAGGVIGLAFFPPQPSWAWVVATIGLLTAMQRYAGRQWYG
>NZ_CP040503.1|WP_009199542.1|1840361_1840877_-|hypothetical-protein
MSDEDLSAADFSRVLSKLPEGLPISDGYDARRSGSDRLLAEENWYSSPKQSMVSWYEDLESPDGSARKRRSLEARVGWNRSTSPQGMLWIAEALGEDTATLNEAVEEASRRKRLTSQCSAIRRSIPWARIAELLAAHREETQGHFKKGAKSLAKGAGSKLTGWLSGRRRDC
>NZ_CP040503.1|WP_040322874.1|1839388_1840120_-|hypothetical-protein
MPKRLVRAATVMALLVALTACESSGSSNGKKSHSHTPTQTASTAVSSQASGTTSPSTSSAPSTAPTSGESKAATPTPTSTEASEAPTSAPAPPSPRAHQSPSEPPSSPQSTGAFTTSVECTPVSGAESPVSKVVFRGNGTKYSARFVYEDGVGTPPDTLGYVVTLFGEDGANGVLSAGHLNGKKVFPVEDDNFVVIEHGYLTIVEAYTRIPGITRPFSWYAEVKDTDNTIATCGTKTTAVPVD
>NZ_CP040503.1|WP_009199545.1|1834685_1839155_-|putative-DNA-helicase-related-protein
MSEGMHGFKDEQLSVLATWNLIEQFSPEPIPEPTGRKRRSRRNGRRRQGEDWRAQLELPSSALGETPDDAAEDADLPVRFHRYQGTEAHRGKGRNGGQAPLPDYQVLDLRPGMMLPWQEIADADAFEGQWRHTVYLGCFTAENIARELESIFVDSTDNLAVARGMSACATVQLDSLGRVLPETAVLSSAAWGVGRARDPGPIVPWWFLGFDAGSKELVNSIRTFEARRSSDGHPSPQTSDSLAELVAIAQSAAGVTRIPSLARPAVRIKSVRVREPGTPGAHGLPPDVGEEDSLNSPFLDEIALASDLIRRDDAGMALSRFLSPDRAVNTARRHDMRKRSAAIDARLSASRIPAGRWPADPALHLSRNQQFAVNRAMHELSDRGGILAINGAPGTGKAAVVREILAGNVVERARRLSRLRDPRDAFTGAIHTWEDGASRREVPQLKPELTGFETVVVSAGPTDTLAEEFLSPSFVAKKWRSGDAFFKGLAAYVNRGRVAAASRPEGRLVTAGSGRKASADAPASAQSRNSLFAGLPMNDSLLIDSTALSNAGFPLPSVSSEDAGGSLPPIDIASFAPKQAPGGASLLSNAKLAVKQSAFHMGKTDSSSAEASSDPAFSFASAAASSAGSRLSGASAIAASASPAGFGFPAAAGASTDAAAPEDSALPTETDAPTETDTPTSDTPTNENATADAAQIGATVDATEVESAPSADSATSTAPGSNAPYSPTQEPASAEADPAGNPAAAGLDVPAASAPPADSALSAASAAPAPSSDSPNQGSLPGVASAQSAASPSSAASAQSAASALSAPSAQSAASALSAASPLSAASAQSAASAFSAPSASSPDSPAVLGLGEESGAPAAGDRESAAAFPSADRPSDREASAPGAWAMVAAQLDTKAQQAAFRRDYWFADGAAGVAGMNAILEEQTIRRDNLRLADWANACAAYAEVEKKVEALLRQRVDAERRRDTLAQLPTRLARAEDAVYVAVAELREAEASVPELIDAAASSERELRAASALVQSQRREEPGLFRRIGSGGGAKRDWQARYDELSAREAAAAEADGLARAALAQAEELVRARAHRVSAIQQELIQIRADIPRLTRQCEEDRRLWGKSYPGAPQSEAEREQNTPWLDVELDEARSELFLAALKLHAAFLRAAAEFTHPGLDAATDVVAGNCPHNLEPEKLTAAWQLLFLAVPLVCTTFTAAARMFHSIGREAFGWLAVDEAAEVRPQMAVGTLARARRTIAIGDPLRLEPTVAVPMKTSMSIASMYGTAQWLAPGASVQTLADRVSSYGTTLRTGERADGEPSAGLWVGIPLRVQSHCSEPMHSILNAIAYDGSLFAGAGGSPTSIPQSAWIDIPADNPGSHVQPLEIDAVRKILDKLRPEGVSADRIFIVTPFAQVARELEMLSSIHWPGLRTGTIQRMPRGRSEVVILVLGGDPDRAAAKVRVTKNPNLITAAVGRAKDRLYVIGDRSAWSQYPYLDVVSDLLG
>NZ_CP040503.1|WP_040322877.1|1833822_1834542_+|MgtC/SapB-family-protein
MKSRKGAPMGNFDLHNLPDQIVAVVATFVLCLLLGVERQFHQKNAGVKTHVLVGLGSCLFTLVSAYGFTPSDAAGLDRSRIAAQIVSGIGFLGAGVIFVNNDTVKGLTTAATVWVSAAMGMACGAHMIPVAIVVLLLHYALIFLLGPLSNRLPSSHHNNRTVIEYESGHGVMRRILLTATRHGYRATVNSTSSITTEEGPGMRVVMRFEGPYPQDALIRALSEVEGVQAVDVVEPGDLD
>NZ_CP040503.1|WP_138587172.1|1832901_1833636_+|hypothetical-protein
MTGAMEIGGRAMRKLAESGWVAAPSAAAALTEAGLPLPDVGYLAEAFDKTVWKAAEDAARGLAERFQTARFFDATEFEPLLVPDPSRFDVRVPAPEGVRADQPEVLKPDFLDERIGEGVNACEEADAWTLFVAATSPAGLAMGSYDDVAGAPSEVFTVEGFDTRSLMIRQLWCALTFQCGREMPDSERREAWTFTVFAGEAPVSGSVVSGTVLHGQVRQRLGKPTRGISSARVRPAVRIAGASG
>NZ_CP040503.1|WP_040322878.1|1832477_1832879_+|cupin-domain-containing-protein
MVNAQIFPRGDRLPEGTFTGAAYLYPLEDNDLLNAGAVTFEPGARNNWHAHPVAQLLVVTAGEALYKEEGKPAVRVRTGESAYTPAGVRHWHGAVPDAEMTHVAVTLKGPDGPVEWGRPVTDEEYAQAAAEAV
>NZ_CP040503.1|WP_040323373.1|1831909_1832128_-|DUF2249-domain-containing-protein
MLDVHAIPHFVRHAAILGALASLNPGFALTIKAGHLPAPLLAQVEQLPGSFAYEVLVNGPEFWLVKITRESL
>NZ_CP040503.1|WP_009199538.1|1843644_1844454_+|alpha/beta-hydrolase
MARLATYISGCGGSTAIVALHGVTDNGPSLAGIAQRWNGERRVALVDSLGHGLSPRLTDAELADPLGASVEAAIDVVEEQAGYAASGKVALLGHSMGGAIATAAAAVRPDLVEALVLEDPAWLTEEQAAAYKAGAQAEIARLDRIAANPADAVRQAVNDHPSRAVGELGAWATAKGQVDRALVAVGVVGLTAPRTQLAAGIAVPCLLMTGDQPGALFTEEEIASILAVGNPLLRATTVTGAGHCIRRDQPEAFYRAVEAFLGSLPSSGA
>NZ_CP040503.1|WP_009199537.1|1844620_1846240_-|trypsin-like-serine-protease
MSEKDAEGQFRPQNVEPTQSLPRYAAEGFGAAYQRPAYQAEDPSASGSAEPAFPRPQDCQERQGAGYLDPRARLGEPTFSGQATGGLPATEGLPAHARAGFSGQSADGNAFGQQFGEDFSTHQSMSGYPSGAAAPASTKRKRHKWSTAALVASMLSGMVLGGVLGGLAGMAIEERENQSSAQSVQPNSPQTKQPPQGQVPDQAPVDDAGEGTSGAAKGKRVNSAPGVVLVNSALNGGEGAGTGVVVDKSGVVVTNYHVVQASTTVTVTDPNTNDQYEAEVVGHNAAQDVAVLKIKNPSKKLKAASIAKKAANSGDTVYAVGNGHGQGYLTKLQGTVTALNRSITAQSASNNESKNKLTGLIQTDADVVSGYSGGPLMNADNQVVGINTAASTGKTSEEINGYAIPISKVMETVKEIRNGETDDGNIIGRNAALGVSVRSVGGANQDGQAPQQDPDIPEAPAGVSGAQVTGLVKGSGAEKAGIVKGDVITAIEGKAVENSSELAKTVQKKKVGDKVKLSVTGADGAQREVEVTLGKASVN
>NZ_CP040503.1|WP_082903057.1|1846400_1847369_-|hypothetical-protein
MRANDAPRAEPQEAQEGAAAPSWLTNASLRPEEDVQSPRSSIAAAIFCVFALIAIGLVGLTTAFSQSSASPKVESVVNRSTSFAATPSTPKASAPPSPTARKTPNFYQPASPEPTPTPTNGVTGLARITTTYGRETMRGAAMILDSSGIIATNYHIVNHPSPTFSVYIPEKGSTHSARLIGYSPLTDVAILKVDGLPPLTPITPAAKPPAPGDPAVMFGFPDSESRATAASGHVQTGVARNRGTTTIDNFTYDGMSFLVSCHMVPGYSGGPTVNPKTGQTLGMNARYYIDSKVQAESIAISDVMRVKTEVLGGKPTKDTVVK
>NZ_CP040503.1|WP_040322866.1|1847564_1848272_-|hypothetical-protein
MSDKDNRTNSADFEAHGPTGASRPFGSSELPGAPKAGDAAGVSDAPSATAPLPTAEAAPVDATSDHADSAEAADSSAPAVGEKKKAKRRWPTRALAAAGVAGIVVGGATMAGVNALTNDSSHGNSSWNSGAGKAGNGKPQPPSGNMPQPPDGGGGPQPPSDGQGGNQQDSGNQGSSGKKSSKWGKNATKNKQNQQQKGSDGQQDSSQTQGTDGQSSGGADSSGGTDSSGGQTPTG
>NZ_CP040503.1|WP_138587173.1|1850917_1851751_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MRPPIVLAATPIGNDGDASARLRGELEKADVVAAEDTRRLLNLAGRLGIAVRGRVLSFHEHNEADRAPVLLGLAREGKRVVVVSDAGMPSVSDPGYRLVALAACSGVDVEVVPGPSAVLAALAVSGLATDRFCFEGFLPRKAGELAAAIRGLKSEGRTMVFFESPRRLGAALRAMCEGFGSDRPACVCRELTKVHQEIARGSLGELAERFSGEVLGEIAVVVAGAPRKEADVEASVAEVLALADAGLRLKDAAAHVARRVGLRKKDLYDAAAAARAV
>NZ_CP040503.1|WP_009199531.1|1852003_1852873_+|hypothetical-protein
MNPNLSLFPGRTSVDQEVWDARKRSCAHRLLNGAGQAMLVAYREEPALNLTAVAHGIAADGSLVVATAEPVLVEALANRDVCAMDVRVSIEKESPDPTVEIVASAVHFLGTARWLSLEETTEAVAAGVLPDDVAAIASAPRGCLAVVSMERVLLHDAAGVTPVSWEEVCRQHHEAEAEAAGGGDLFADSFGELVGLDVLSSFGYDAVNELFGAVTLGIVPGALLARQPVRIGCEHVQTAVLCVDIDRAGLTLMRVSREEAVTAFVPFAASIVRGDELAREIGRLIELGS
>NZ_CP040503.1|WP_138587174.1|1852991_1853252_-|DUF1540-domain-containing-protein
MMAQTLVSTCAATACSFNNGGCTVAMTMGERGCATFAKLDARRSVAANGLVGACQRLECVHNSDLVCTAASIDVTADAACAAFEAR
>NZ_CP040503.1|WP_009199528.1|1853595_1854483_-|Cof-type-HAD-IIB-family-hydrolase
METHAPHPASAGLRAEAGPLRPEAVKLARSLRLVVCDMDGTLLDEDSRIPDDFWPLLDAMRERGIAFIPASGRQYATLAAMFSQELAGMPIIAENGSFVVQDGREVHSSTLAKSVVVGIVDRSRSLGRKELGVVVCGKRSAHVESTDPHFLENVEKYYVVNQVVDDLTAVDDDVLKVELFDARDAKKFALPLVQDFADSHDVVVSGENWADVMAKGTNKGAALRALQRSLGISPAQTAAFGDYLNDYEMMAEAELSFAMANGHPDLLAAARFTAPSNAEHGVPTTLKALLNSDAA
>NZ_CP040503.1|WP_009199527.1|1854496_1855477_-|isochorismatase-family-protein
MAETRALIIVDVQPTFCEGGALAVEGGNATAERIADFVTENADEYAMIVTTQDWHVNPGSHFSEDPDFIDTWPPHALAGTAEAELHEAVASLPIDAAVKKGEYEAAYSGFEGRDADGRFLEEILRAAEIEEVDVVGIAESHCVKETALDALKAGWPTRVLSDLTVPVSEELGIAARTEMDEAGVEQVASMSAFGFYEEGEDAPIPGDDASLAGAIGGDAYGSLYGSDGGYADGIDADAYGEEGTLRDGDPHSDGGDRYGDLDEDGEEPDLATRLTAGLGAGLSLSSEADDVDLDDFDIDIDEEIDFSDDADETDFDFSDIDDAPTL
>NZ_CP040503.1|WP_040322862.1|1855749_1857558_+|methionine--tRNA-ligase
MSHILSAVAWPYANGPRHIGHVAGFGVPSDVFSRYMRMRGEDVLMVSGTDEHGTPILVAAEAEGKTPKQLADENNRIIVEDLVALGLSYDLFTRTTSVNHEHVVQSMFEVCRDNGYMIVQQQNVAIDPVTGNTLPDRYIEGTCPICGSEGARGDQCDVCGNQLDPQDLIDPVSKVSGQAPRFEVTDHYFLDVPALAEKLGEWLDDVEATGEWRPNVIVFSKHLLEDVRPRAMTRDISWGIPVPGWEDQPNKRLYVWFDAVIGYLSASVEWARRRAAAGKGTAEDWRKWWNDPEALSYYFMGKDNIVFHSQIWPAELLAYNGEGSRGGEPGKLGRLNLPTQVVASEFLTMEGKKFSSSKNVVIYVRDVLSRYQPDALRYFISIAGPESSDADFTWAEFVRRNNSELVAGWGNLVNRTAAMIAKNFGEIPTPGQPEEVDAELLDAVRNGFATVGESIANHGQRAALTEIMRLVGEANAYVAKTEPFKLKAPEQRERLATVLHTLAQAVWDLNTMMSVFLPHSSNAIDRVFGGKGDLAPMPRLEEAEDLDGGDPYPIITGDYSSVRPWAPSEVAPGTPVAKPTPVFAKLDEAVVAEELERLGIEA

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Crispr_ID: NZ_CP040503_24

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040503_24

1860149-1860240

Orphan

Consensus_repeat	Method
AAGCCCGGATCTTGATAGCCGCCTTG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP040503_24

>merge|NZ_CP040503|24|1860149-1860240|CRISPRCasFinder
AAGCCCGGATCTTGATAGCCGCCTTGTTGCGGGTAACCGCCTTGCTGCGGATAACCCTGCTGCTGGAAGCCCGGATCTTGATAGCCGCCTTG

>NZ_CP040503|24|23|1860149-1860240|CRISPRCasFinder
AAGCCCGGATCTTGATAGCCGCCTTG	TTGCGGGTAACCGCCTTGCTGCGGATAACCCTGCTGCTGG
AAGCCCGGATCTTGATAGCCGCCTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040503.1\|WP_138587176.1\|1862827_1863652_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009199508.1\|1871683_1872565_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224582
NZ_CP040503.1\|WP_050758838.1\|1870916_1871171_+\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|197713
NZ_CP040503.1\|WP_009199525.1\|1857563_1858523_+\|TatD-family-hydrolase	unknown	unknown	gnl\|CDD\|238635
NZ_CP040503.1\|WP_009199527.1\|1854496_1855477_-\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238493
NZ_CP040503.1\|WP_138587272.1\|1864431_1865586_+\|DUF348-domain-containing-protein	unknown	unknown	gnl\|CDD\|226111
NZ_CP040503.1\|WP_040322846.1\|1871185_1871482_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009199531.1\|1852003_1852873_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_138587177.1\|1868980_1870840_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP040503.1\|WP_009199522.1\|1859369_1859930_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_138587173.1\|1850917_1851751_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223390
NZ_CP040503.1\|WP_138587273.1\|1865664_1866690_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase	unknown	unknown	gnl\|CDD\|234708
NZ_CP040503.1\|WP_009199519.1\|1861123_1862740_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223021
NZ_CP040503.1\|WP_009199528.1\|1853595_1854483_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|369792
NZ_CP040503.1\|WP_040322860.1\|1858519_1859212_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_138587174.1\|1852991_1853252_-\|DUF1540-domain-containing-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_040322866.1\|1847564_1848272_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009199513.1\|1867979_1868984_+\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	unknown	unknown	gnl\|CDD\|235110
NZ_CP040503.1\|WP_040322852.1\|1866926_1867940_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_040322862.1\|1855749_1857558_+\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237029

Protein	Function_ID	Function_description	E-value
NZ_CP040503.1\|WP_009199508.1\|1871683_1872565_-\|ABC-transporter-permease	gnl\|CDD\|224582	COG1668, NatB, ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism].	7.27483e-17
NZ_CP040503.1\|WP_009199527.1\|1854496_1855477_-\|isochorismatase-family-protein	gnl\|CDD\|238493	cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).	7.84203e-57
NZ_CP040503.1\|WP_138587272.1\|1864431_1865586_+\|DUF348-domain-containing-protein	gnl\|CDD\|226111	COG3583, COG3583, Uncharacterized protein conserved in bacteria [Function unknown].	1.95821e-24
NZ_CP040503.1\|WP_050758838.1\|1870916_1871171_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197713	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor.	3.1557e-14
NZ_CP040503.1\|WP_138587177.1\|1868980_1870840_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	1.22583e-158
NZ_CP040503.1\|WP_138587173.1\|1850917_1851751_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	5.01915e-101
NZ_CP040503.1\|WP_138587273.1\|1865664_1866690_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	5.67741e-100
NZ_CP040503.1\|WP_009199519.1\|1861123_1862740_-\|hypothetical-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	4.77801e-10
NZ_CP040503.1\|WP_009199525.1\|1857563_1858523_+\|TatD-family-hydrolase	gnl\|CDD\|238635	cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.	9.25521e-85
NZ_CP040503.1\|WP_009199528.1\|1853595_1854483_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	4.18714e-55
NZ_CP040503.1\|WP_009199513.1\|1867979_1868984_+\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	gnl\|CDD\|235110	PRK03188, PRK03188, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.	1.48262e-94
NZ_CP040503.1\|WP_040322862.1\|1855749_1857558_+\|methionine--tRNA-ligase	gnl\|CDD\|237029	PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.	0

>NZ_CP040503.1|WP_009199522.1|1859369_1859930_-|hypothetical-protein
MRLSGAGKTPLSQAAPGLAFFLTSALVGVVSLFLPMCDFDEKHDMPDEISDMTLLKALGHSEFTTVGLFISIAAIFVVLGFSLTAFVTGGKLTSIQTAGRAGVTAGVAFVVGRIVDFIKMKRDDFPFDQLGMGFILFTVVGVFMLITGFVVQNTADRIEAESKASDFDAAAVHGQGPASEADQSEP
>NZ_CP040503.1|WP_040322860.1|1858519_1859212_-|hypothetical-protein
MHDYPSSPPPKPRRACGHGASPAAYRVASPPTREYTRAPVLIAETDAFFQPPASRSRKMQLFFAATSSLSCIAIVAGMFLDYITDAEPLTFLDVVAELWVQSLVLVAVLVVAVAVAASLCSPGGYGERSAATAIAGAGAVIACGRIVDLASFGIVAALGQDASVGPGLWTMFGGALILFGAGAMARSNATYGWADDSSDPLWRTVWAQSKAVAAGLSKPRRKAEGDRRAV
>NZ_CP040503.1|WP_009199525.1|1857563_1858523_+|TatD-family-hydrolase
MGGNRKKRRTYPDVPERLASAIVDNHTHLPVRGDRDYAALSFDVASGVEEGAGEDSQGSIPWHVARMEAAGVRGAITCGCDIPTLQPTVALAERWPSLSAAIGIHPNEAPLHRGITEESPDGMAHGLDPWHRDLSLEDAVAEVAALAVSADVVAIGETGLDFYRTAAAGRAAQEEAFRMHIELAKDLDLPMQIHDREAHAECMRILRECGAPERTVFHCFSGDREMAEVCAENGWHASFAGPISYPANEALREAFMALPEELILVETDAPYLAPVPWRGHPNAPYASAYTARFMADLRGADEASWCEALDRNARRVYGV
>NZ_CP040503.1|WP_040322862.1|1855749_1857558_+|methionine--tRNA-ligase
MSHILSAVAWPYANGPRHIGHVAGFGVPSDVFSRYMRMRGEDVLMVSGTDEHGTPILVAAEAEGKTPKQLADENNRIIVEDLVALGLSYDLFTRTTSVNHEHVVQSMFEVCRDNGYMIVQQQNVAIDPVTGNTLPDRYIEGTCPICGSEGARGDQCDVCGNQLDPQDLIDPVSKVSGQAPRFEVTDHYFLDVPALAEKLGEWLDDVEATGEWRPNVIVFSKHLLEDVRPRAMTRDISWGIPVPGWEDQPNKRLYVWFDAVIGYLSASVEWARRRAAAGKGTAEDWRKWWNDPEALSYYFMGKDNIVFHSQIWPAELLAYNGEGSRGGEPGKLGRLNLPTQVVASEFLTMEGKKFSSSKNVVIYVRDVLSRYQPDALRYFISIAGPESSDADFTWAEFVRRNNSELVAGWGNLVNRTAAMIAKNFGEIPTPGQPEEVDAELLDAVRNGFATVGESIANHGQRAALTEIMRLVGEANAYVAKTEPFKLKAPEQRERLATVLHTLAQAVWDLNTMMSVFLPHSSNAIDRVFGGKGDLAPMPRLEEAEDLDGGDPYPIITGDYSSVRPWAPSEVAPGTPVAKPTPVFAKLDEAVVAEELERLGIEA
>NZ_CP040503.1|WP_009199527.1|1854496_1855477_-|isochorismatase-family-protein
MAETRALIIVDVQPTFCEGGALAVEGGNATAERIADFVTENADEYAMIVTTQDWHVNPGSHFSEDPDFIDTWPPHALAGTAEAELHEAVASLPIDAAVKKGEYEAAYSGFEGRDADGRFLEEILRAAEIEEVDVVGIAESHCVKETALDALKAGWPTRVLSDLTVPVSEELGIAARTEMDEAGVEQVASMSAFGFYEEGEDAPIPGDDASLAGAIGGDAYGSLYGSDGGYADGIDADAYGEEGTLRDGDPHSDGGDRYGDLDEDGEEPDLATRLTAGLGAGLSLSSEADDVDLDDFDIDIDEEIDFSDDADETDFDFSDIDDAPTL
>NZ_CP040503.1|WP_009199528.1|1853595_1854483_-|Cof-type-HAD-IIB-family-hydrolase
METHAPHPASAGLRAEAGPLRPEAVKLARSLRLVVCDMDGTLLDEDSRIPDDFWPLLDAMRERGIAFIPASGRQYATLAAMFSQELAGMPIIAENGSFVVQDGREVHSSTLAKSVVVGIVDRSRSLGRKELGVVVCGKRSAHVESTDPHFLENVEKYYVVNQVVDDLTAVDDDVLKVELFDARDAKKFALPLVQDFADSHDVVVSGENWADVMAKGTNKGAALRALQRSLGISPAQTAAFGDYLNDYEMMAEAELSFAMANGHPDLLAAARFTAPSNAEHGVPTTLKALLNSDAA
>NZ_CP040503.1|WP_138587174.1|1852991_1853252_-|DUF1540-domain-containing-protein
MMAQTLVSTCAATACSFNNGGCTVAMTMGERGCATFAKLDARRSVAANGLVGACQRLECVHNSDLVCTAASIDVTADAACAAFEAR
>NZ_CP040503.1|WP_009199531.1|1852003_1852873_+|hypothetical-protein
MNPNLSLFPGRTSVDQEVWDARKRSCAHRLLNGAGQAMLVAYREEPALNLTAVAHGIAADGSLVVATAEPVLVEALANRDVCAMDVRVSIEKESPDPTVEIVASAVHFLGTARWLSLEETTEAVAAGVLPDDVAAIASAPRGCLAVVSMERVLLHDAAGVTPVSWEEVCRQHHEAEAEAAGGGDLFADSFGELVGLDVLSSFGYDAVNELFGAVTLGIVPGALLARQPVRIGCEHVQTAVLCVDIDRAGLTLMRVSREEAVTAFVPFAASIVRGDELAREIGRLIELGS
>NZ_CP040503.1|WP_138587173.1|1850917_1851751_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MRPPIVLAATPIGNDGDASARLRGELEKADVVAAEDTRRLLNLAGRLGIAVRGRVLSFHEHNEADRAPVLLGLAREGKRVVVVSDAGMPSVSDPGYRLVALAACSGVDVEVVPGPSAVLAALAVSGLATDRFCFEGFLPRKAGELAAAIRGLKSEGRTMVFFESPRRLGAALRAMCEGFGSDRPACVCRELTKVHQEIARGSLGELAERFSGEVLGEIAVVVAGAPRKEADVEASVAEVLALADAGLRLKDAAAHVARRVGLRKKDLYDAAAAARAV
>NZ_CP040503.1|WP_040322866.1|1847564_1848272_-|hypothetical-protein
MSDKDNRTNSADFEAHGPTGASRPFGSSELPGAPKAGDAAGVSDAPSATAPLPTAEAAPVDATSDHADSAEAADSSAPAVGEKKKAKRRWPTRALAAAGVAGIVVGGATMAGVNALTNDSSHGNSSWNSGAGKAGNGKPQPPSGNMPQPPDGGGGPQPPSDGQGGNQQDSGNQGSSGKKSSKWGKNATKNKQNQQQKGSDGQQDSSQTQGTDGQSSGGADSSGGTDSSGGQTPTG
>NZ_CP040503.1|WP_009199519.1|1861123_1862740_-|hypothetical-protein
MSTQYPPQNATVVGQIGKDSTDQQAYSSPFAGHESPAAPEPKASSGKTSIAALVGGIGALLAVIGLFLPYFKDDRGNLSWLNSGDYKGSMGPFSLTLAVGIVAVVAVIIPSLMKKSPKAGGLAAGLAQTLAGVVTVSNWAVNFQPAKFSDEASRGIGFWLIGIGGIILVLGGLLTLISGLRAGADSDARPDGSYLSAPYTNQESTLAPPAGATGQPLPGDQNRTGQFPPAQPYGQPYSTQPPFERQAPFAQSAGSSYTGAPPMSAQSAQETRWPASAPSAPSASPQFTQGGYGSPAAQPYGGNQPAQPYTQQPYGANPPAQAYGQAQPTQPYGQPSSFQSPGAPQKQPNDPQQPFNNQQAPGSQQAPFGQPEAPRPQPQASSGQPQFNQPQFGQAQFGQAPNNAPTQSQPAQGQQIQPEQSQPMQGQQSEPTQNGQEPQAPQSEPSPQETSPQSEHAPQAEATSETDGAPQTDNAPQTDNAPQTGGAPQAGGMPTEGTQSPAQAQSPQQGAPASSPSPSEAAPSPQNDGEAWPSKPDQ
>NZ_CP040503.1|WP_138587176.1|1862827_1863652_-|hypothetical-protein
MTSNFPSSPNATPTGPFAPSNQPIPDPSAPFGIDALDLYATSGRKNTLNIVTAALSGVGATILIAGCFFPYYGFNWRDSSSSSDSNPDKNTLAAFGGGYFFLYIFFAIVVFAFLALVLRRHKTGASQWVPCTACLMTSGAVLAISIGEKRTTFRQAREYSYSPRLGFWLILAAGLLLLACGILGIVLATKATPKMIGVAYLRQSSDKSPSDFAGDPRTVGNVFAAEGARPQPSYGQNPQGPGNERTGPHIGSSPAGRSSGTPSSSFRPPYGRMD
>NZ_CP040503.1|WP_138587272.1|1864431_1865586_+|DUF348-domain-containing-protein
MSQSLLHPDSPLGYLVRPFTENEEEAHAAAAAEAPVPEAPVEAAPVDALVDEELASVGATSTKKNRFSLFSRSRAAVVAVVAAASGIGGIAAGTLSVANENDAHRLDATAGVAQLAPVQEKAAKATFTVSVDGQKRTVTTTKPTLLGALADAGITVDGDDKVSQEMSAPVADGSTVTITRVEKKTVTEDVADAHKSSKVDDSSLAKGSTEVKTKGVDGVTANTYEVTYENGKETERTLVVSSVKVARVDEVVSVGTKEAPPTKTVTTGDGGTAEVPSATAAPAPAGSAQQIASSMMGSYGWGGDQFSCLVKLWTKESNWNSHALNSYSGAYGIPQALPGSKMASAGADWQTNPATQIKWGLGYIKGRYGTPCGAWGHSQSTGWY
>NZ_CP040503.1|WP_138587273.1|1865664_1866690_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase
MASTLGIRPTKTLGQNFVHDAGTVRRIVREAGVRPGDVVLEVGPGLGSLTLALLEAGAAVCAVEIDPVLAGALESTVAARMPEAVERLAVANLDAMDVKAPSNLPIPRLLRSEEGRAHGRAESAPETAELEPGSVDFAGETARTGRLPEKPERFVASTRNLAEPSRLVANLPYNVAVPIFLGLLEALPSIQAATVMVQAEVADRLAASPGSRTYGVPSAKASWYGEAARGAKISRNVFWPIPNVDSALVNFKRHGALPWLPADVAGRGAFADVAREDVFAVIDAAFAQRRKTLRAALATWAGSAARAEDLLVFAGIDPKARGEQLGIAEFAAIARAAGALA
>NZ_CP040503.1|WP_040322852.1|1866926_1867940_+|hypothetical-protein
MDRAMHEFWVRAERRIDASLALIMASMLWLVVLPLTVMLTDLEWSRLTVVLMLASIPICCTALWPLKTGLMTVRAIEERDGEEVARWRETLVPPAEPQLVKERLRRVHYPMLAVIAGAGAFTAAISLNRWAHAQTSGMSNFSLGVALGAVGVALGACVLMFAGKIRPRSLLLGLILVGWAIPAGGGAASLAVIVGRQDLESALAVRTLTTVSYVIFGLIGMLVSLLLFALWLAWLGKFVSGKSLEVNHLARAVPVFPEGRGAESAAESEFDAEDLDVIENALSVPGSVHAAVMATLLTTLATVGRAIAETNETAVVTVLGAIAACCASLALYLAVKV
>NZ_CP040503.1|WP_009199513.1|1867979_1868984_+|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase
MQEVRVVTPSKVNLALRVGSARPDGFHPLDTVFEALDVHDEVIVRRSDSLSLRMEGEGADALPEDSTNLAFRAARALRERFGAPGLGAEMTVRKAIPVAGGMAGGSADAAGALVALNALWGLGLSSADLMSLGSELGSDVPFCIMGGIAHGTGRGEILAPVYPGRGHAWVLLTNPVGLSTPAVFRELDRIAESAEGAGAVAREAAETERPGSVAAGVAGPGRAAEADVAENPASTRELREAVARGDLQATAALMANDLQAPAFSLRPDLEDVVERASRFGATAILSGSGPTVALLAFDPAHADRLAMRAAIEFPKLRAVRANGPAAGACVAEAK
>NZ_CP040503.1|WP_138587177.1|1868980_1870840_+|ATP-binding-cassette-domain-containing-protein
MMAHLLGAQAIGLEYPNSVVLESASLGIEEGDRIGVVGRNGGGKSSLLRILAGTLDPTEGFVTRRGGVRIGVLEQDDTLDADATVGHTLVGEAAEHEWASDPKIRDVIAGLVGDLDWQARVGTLSGGQRRRLGLAALLIGEWDVLMLDEPTNHLDVEGITWLARHLKNRWPKNVGGLLVVTHDRWFLDEVATSMWEVHDGVVEPFEGGYAAYVLQRVERDRIAAAAESKRQNLMRKELAWLRRGAPARTSKPRFRIEAANRLIADVPPVRDSVELTRMAVARLGKDVVDLEEAGVRYGDRDVLREITWRIAPGERTAILGANGAGKSTLLGLVAGSIAPTSGSVKRGKTVRIGILDQRFSALDEVGGDLVRQVLARYKTSYAVGEREMSPAQLLERLGFSRDCLSSRVCELSGGQKRRLQLLLVLLSEPNVLILDEPSNDVDTDMLAAMEDLLDSWPGTLIVVSHDRYLVERVTDRQYAIFDGRLRHLPGGVDEYLELSDAAKAGSEGDAPKKSAGVGAPKAPGKNAGSAKTDGGSAAGQNGAELSGAERRAAEKEVNSIDRRLAKLADKVAQVHARMAEHDQSDYVGLRKHADDLRVLEAEVAELEDRWLELSEKLND
>NZ_CP040503.1|WP_050758838.1|1870916_1871171_+|helix-turn-helix-transcriptional-regulator
MFRVLGNESRLLLLSLVSHENRPVSALAEAAKMSQPLTSQHLRILRDAGLLEADRRGKEVIYRIADHHVEHVVRDAIAHARENA
>NZ_CP040503.1|WP_040322846.1|1871185_1871482_+|hypothetical-protein
MSTDDPHAHHTVAEHAHGEGCGHEAVQHGDHVDYVHDGHRHALHGDHYDDHQEVAEHTVAEHAHGEGCGHEAVQHGDHVDYVHDGHRHAQHGDHYDEH
>NZ_CP040503.1|WP_009199508.1|1871683_1872565_-|ABC-transporter-permease
MILSLIFKREFTRLLGSKAIQVSTGIVVALMFIGGAIGGYFLRKNGVDTTPPEVTGNGADGNPFGFAMGSLGNSLLMVMLFTGIGVLGAGVVEEKASRVVEILLTTVKPRVLLLGKILGIGAGMLVVFAAYMVGIVGGLGLAGLLPDLGTLGKLGVWTFLPTFLAWIVVGYLTASGLTGALASTVSRQEDLGGVQTPIIFGLTIPIYTAMYYIPTQPDSTASEVMSFIPFVSPPTMIMRTALGGVPAWQQLVAFAVNIAFIPLLAALAGKIYENSILRTGERVKIVKALRGSN

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Crispr_ID: NZ_CP040503_25

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040503_25

1949015-1949098

Orphan

Consensus_repeat	Method
GATGGTCTCGCCTGCGCGCGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040503_25

>merge|NZ_CP040503|25|1949015-1949098|CRISPRCasFinder
GATGGTCTCGCCTGCGCGCGGGCCGTGCTCTAGTCCGATGTTTGGGTATGTTCCTGTTACGGATGGTCTCGCCTTCGCGCGGGC

>NZ_CP040503|25|24|1949015-1949098|CRISPRCasFinder
GATGGTCTCGCCTGCGCGCGGGC	CGTGCTCTAGTCCGATGTTTGGGTATGTTCCTGTTACG
GATGGTCTCGCCTTCGCGCGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040503.1\|WP_009199430.1\|1941949_1943215_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379306
NZ_CP040503.1\|WP_009199427.1\|1945703_1946228_+\|DUF664-domain-containing-protein	unknown	unknown	gnl\|CDD\|368218
NZ_CP040503.1\|WP_138587276.1\|1937898_1938120_-\|GNAT-family-acetyltransferase	unknown	unknown	unknown
NZ_CP040503.1\|WP_050758804.1\|1956601_1957441_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227511
NZ_CP040503.1\|WP_009199414.1\|1954198_1955632_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP040503.1\|WP_083786157.1\|1941576_1941768_-\|CopG-family-transcriptional-regulator	unknown	unknown	unknown
NZ_CP040503.1\|WP_138587183.1\|1938797_1939091_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_040323330.1\|1950054_1950864_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|316372
NZ_CP040503.1\|WP_009199408.1\|1962668_1963265_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|376808
NZ_CP040503.1\|WP_009199428.1\|1943790_1945662_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_040322816.1\|1946341_1947919_-\|DUF5129-domain-containing-protein	unknown	unknown	gnl\|CDD\|375028
NZ_CP040503.1\|WP_009199435.1\|1938291_1938765_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224216
NZ_CP040503.1\|WP_040323329.1\|1952880_1953681_-\|methyltransferase	unknown	unknown	gnl\|CDD\|225852
NZ_CP040503.1\|WP_009199432.1\|1939867_1941406_+\|alpha-amylase	unknown	unknown	gnl\|CDD\|236518
NZ_CP040503.1\|WP_009199409.1\|1961052_1962546_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP040503.1\|WP_050758805.1\|1955715_1956435_-\|aminodeoxychorismate-synthase	unknown	unknown	gnl\|CDD\|180660
NZ_CP040503.1\|WP_083786155.1\|1957706_1960769_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|224037
NZ_CP040503.1\|WP_009199433.1\|1939144_1939552_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_050758806.1\|1949374_1949716_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378427
NZ_CP040503.1\|WP_009199419.1\|1951094_1952741_+\|DUF5129-domain-containing-protein	unknown	unknown	gnl\|CDD\|375028

Protein	Function_ID	Function_description	E-value
NZ_CP040503.1\|WP_009199430.1\|1941949_1943215_+\|ATP-binding-protein	gnl\|CDD\|379306	pfam13635, DUF4143, Domain of unknown function (DUF4143). This domain is almost always found C-terminal to an ATPase core family.	2.14319e-41
NZ_CP040503.1\|WP_009199427.1\|1945703_1946228_+\|DUF664-domain-containing-protein	gnl\|CDD\|368218	pfam04978, DUF664, Protein of unknown function (DUF664). This family is commonly found in Streptomyces coelicolor and is of unknown function. These proteins contain several conserved histidines at their N-terminus that may form a metal binding site.	8.34011e-09
NZ_CP040503.1\|WP_050758804.1\|1956601_1957441_-\|hypothetical-protein	gnl\|CDD\|227511	COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton].	4.29658e-17
NZ_CP040503.1\|WP_009199414.1\|1954198_1955632_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.82597e-58
NZ_CP040503.1\|WP_040323330.1\|1950054_1950864_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|316372	pfam13847, Methyltransf_31, Methyltransferase domain. This family appears to have methyltransferase activity.	2.6125e-27
NZ_CP040503.1\|WP_009199408.1\|1962668_1963265_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|376808	pfam02525, Flavodoxin_2, Flavodoxin-like fold. This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) EC:1.6.99.2. These enzymes catalyze the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species. This enzyme uses a FAD co-factor. The equation for this reaction is:- NAD(P)H + acceptor <=> NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy. The family also includes acyl carrier protein phosphodiesterase EC:3.1.4.14. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP. This family is related to pfam03358 and pfam00258.	2.0102e-52
NZ_CP040503.1\|WP_040322816.1\|1946341_1947919_-\|DUF5129-domain-containing-protein	gnl\|CDD\|375028	pfam17173, DUF5129, Domain of unknown function (DUF5129).	1.01893e-61
NZ_CP040503.1\|WP_009199435.1\|1938291_1938765_-\|hypothetical-protein	gnl\|CDD\|224216	COG1297, COG1297, Predicted membrane protein [Function unknown].	0.00589364
NZ_CP040503.1\|WP_040323329.1\|1952880_1953681_-\|methyltransferase	gnl\|CDD\|225852	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism].	3.00388e-14
NZ_CP040503.1\|WP_009199432.1\|1939867_1941406_+\|alpha-amylase	gnl\|CDD\|236518	PRK09441, PRK09441, cytoplasmic alpha-amylase; Reviewed.	0
NZ_CP040503.1\|WP_009199409.1\|1961052_1962546_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	2.57563e-99
NZ_CP040503.1\|WP_050758805.1\|1955715_1956435_-\|aminodeoxychorismate-synthase	gnl\|CDD\|180660	PRK06696, PRK06696, uridine kinase; Validated.	5.48145e-11
NZ_CP040503.1\|WP_083786155.1\|1957706_1960769_+\|AAA-family-ATPase	gnl\|CDD\|224037	COG1112, COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair].	2.5384e-28
NZ_CP040503.1\|WP_050758806.1\|1949374_1949716_-\|hypothetical-protein	gnl\|CDD\|378427	pfam10400, Vir_act_alpha_C, Virulence activator alpha C-term. This structure is homo-dimeric, and the domain here is the C-terminal half of the structure, often associated with PadR upstream, (pfam03551), which is a transcriptional regulator.	3.46581e-10
NZ_CP040503.1\|WP_009199419.1\|1951094_1952741_+\|DUF5129-domain-containing-protein	gnl\|CDD\|375028	pfam17173, DUF5129, Domain of unknown function (DUF5129).	9.28502e-38

>NZ_CP040503.1|WP_040322816.1|1946341_1947919_-|DUF5129-domain-containing-protein
MGGISAVLAFIFNILIVPALIITLPIVAMWPSHGGHHPTVEVRDEAGVLQADSLIKEIQKLTFRKKVHVAVLTVSGTYIDNLNDEVLKYARDHSDTDVPWISPSVPDYWNNGLVILAVAPDGRKVGCYFGEDVKVPLESQADIQNAAKEQYRNADWQGGTVSMAKEAADVIGGASSGNRTLSQVVRGIFVVLGVAWLCYGLWRGYAARRRAREALGHYSQVTHDYATTEHYASAIPEDEPHGAQVMERYRWFRNEYEKTARDWKALEGVCGAKWFAMKTLRQAKSLKERSAALDSLDNVIANTATFLSMSSGWEQVWANEQGPVLEDLGSLDALCAKIDHADVALTTEETKGWVRTQHQKLSKISYELETGQTKPSAALDELDRIAEQTKVRATRLARQAIEADTSSYAAQRRQRFNDSLSSTRRAGYSGSWFYDGRRGNYRPHSTIRLNPSSPALFAVDSSEGSFGGSGSSSSFDSISDLVVGYSSASSYVPASSGSSSSSGSSFSSGGFSSSSFSGAGSSSSF
>NZ_CP040503.1|WP_009199427.1|1945703_1946228_+|DUF664-domain-containing-protein
MNLSDLLIDSLSRSRQRFDRALSGVAVEQANTQPTPKTAPRVDSLSWLAWHTAREIDFQIALIAGVQPVWITAGHKERFALDLPDDTEDWHHTPELAAKVVVSDISVLASYLDDAYAWANDYLRGLKEGDFAKVIDDSWDPPVTLAARLVSIVDDAAQHSGQAVYTRRLLGLPG
>NZ_CP040503.1|WP_009199428.1|1943790_1945662_+|hypothetical-protein
MDLTTADDAYLHLKEVAAKLIESLSLGREEFLVCERLLMRGNGIEQVLLGLKQNVNLVNDMIRELEPFASLESISRAQATLKLYCQGNTNLLRFLPDYKEDLSSSLAILGLLLLYSKDSSSSLANAKGYVRAISRACSEGFVPEEKWKSAEAVARGSSMAEVAQKEGVARETVRYRLSGLYPLVTIRKVKEAWRIVKMTQDKGDLDEGNDSQTEAAAPGNEGSDETDETVRKEEDSGVKGDTAGEGGDTARKNDEAPRESDATAGKGAAQESAKKRRKGKNSSRKGDDETSSYAQGRGSVARDPIAMSLAVRRARDDSDARAAKRDELWDLALRTANSEGGVAPEADQRHAAKGEPSEASPKPERREEGPPGGLPPVKERKVTRRNGGRTFSDEDCWAAVVEYMSLDDRTHSGGDYARYSRDIDGMPALITVKGRLGLHWAELAETANRLLAGRIRPDEEEWARDVMTPRKWENYVRKARGSGASRRFAIELVKQCIAERGPYITHVIYTDWAEERGNTPSHALVSISGMSWNSLVKAAGGYSGRRNIGMWTKEEILKLVALYIKQEKSRGEEPSIEGYSSWVRKQTVPLPNIVLVTKRVGSWVEAVKRASRYLRTDDRPLLQ
>NZ_CP040503.1|WP_009199430.1|1941949_1943215_+|ATP-binding-protein
MAAQKNYLPRVADRMVEESLGYSGGVLLEGVRACGKTMTGRRHASSEVALDSGLPQLRAALDVDPSLVLAGEAPRLIDEWQVEPSLWNLVRREIDSRRAPGQFILTGSAVPAEDAARHSGAHRLSRIRLRPMTLFERGLGDGSVSLAGLFDGHDPKPTLDSGTSVREALDALVHGGWPGDRNLTVRQAQRHLRDYVDDIINIDVGRLDGEPRRDPLRMRAFIRSLARHVSTEASFATIAKDVSGQSLSAETAVAYMNALKRLFIVEEQPAWAPHLRSRYAVRTSPKLHFVDPALAAAATATSSARLMEDLGTAGQWFESQAVQHLRVFAEPLGGRVFHFRDKSGREADIVVELDDGRWAAFEVKLGQRQIPAAQTSLAAFVDDVDTKRTPPAEFTAVVTADGPTMTLPDGSVTFPLRALRP
>NZ_CP040503.1|WP_083786157.1|1941576_1941768_-|CopG-family-transcriptional-regulator
MRLSKEDERLLTLFAEEDGISRQEATIRAIHGAAARRGHERRVKEASVRIRNRYANVLERLGL
>NZ_CP040503.1|WP_009199432.1|1939867_1941406_+|alpha-amylase
MGNNDRANNERASDVVNPLLLQAFAWDMAPDSSHWRLLARNAEFLAACGVSSIWLPPAYKGHAGVKDVGYGVYDMYDLGEFDQKGAVPTKYGTKDEYLAAVAALHAAGVSVVADVVLNHRMGGEAVETVRATPVDPGDRRRPIGEVEEIQAWTRYKFPGRGGAYSDFTWDWTCFNGSDWDETRGISGVWLFEGKQWNENVDDEFGNYDYLMGCDVDVADPKVRAELDRWGRWYVETADIDGLRLDAVKHIGADFFADWLPELRKATGRALPAVGEYWSHDVGELKEYLEAVPSTSLFDVPLHFHLHAASNSNGDVDLSRLFEGTLVDADPARAVTFVENHDTQPGQSLASTVQSWFKPSAYAVILLREAGTPCVFWGDLFGTPETGDLPAVAELPLLMTMRRALAHGPQHDAFDAPDVVGFAREGDDAHPGSGLAAVLSDRLAGAKRLYVGARHAGKKWVSVVGGHEPVVVGDDGVVELSVSDGGLSVYVPESAKPMLDGAEEYRLRVGSGN
>NZ_CP040503.1|WP_009199433.1|1939144_1939552_-|hypothetical-protein
MTGKEEIELRERQPLWPAWLSWVLSIAGTLILAFAALSGGAAILFWKFESECPEATVDCVYVVRRPGLLFLGIFALVSVAITLRKMVRAMRKRDVREMRTVLVLLSVTLALALSILGVPFLDALFDDPYFPPPGG
>NZ_CP040503.1|WP_138587183.1|1938797_1939091_-|hypothetical-protein
MHPGETFCIPARLSADPDESRTFIGDSGDPDDLRDPGDPGDLRDLGDPGDPIPRMSLRQRKEDSRGPPAGRSARRLRKGLGSRTQRVLPQFGGALRR
>NZ_CP040503.1|WP_009199435.1|1938291_1938765_-|hypothetical-protein
MTEKQEKELRERQPSWTARRIRALSVAGVFILVGAAISGGVAIFTWQYKDLCPEGGECKTLVWRPGLLFLGIYALACAAITLWKMIRAMRKREVRQLRTALALLAVTFSLILAVWCTLLIDNSSYKRHEYRPSSDDLCEVYDCNPSSSTPPTEESSK
>NZ_CP040503.1|WP_138587276.1|1937898_1938120_-|GNAT-family-acetyltransferase
MGMAMLQNALRRALAASESLCATCVLIHCRDAAAKSFYTHHVDALASPADPLQLVVPMKRIEALLVEQGQDGR
>NZ_CP040503.1|WP_050758806.1|1949374_1949716_-|hypothetical-protein
MRRWLTSPLEEEKAKDPFIARVFFAGSLSRAETERILDERERQAKEKLQSLKALGRPVDDLPSALRDATLRKGVLDAEAELTWIQETRGILERHSPQSPPKDPSSLPTPAEGP
>NZ_CP040503.1|WP_040323330.1|1950054_1950864_+|class-I-SAM-dependent-methyltransferase
MGALEHRYTHGHGPAVLEGHARRGALDSAAYLLPRLHPGMDLLDVGCGPASITADLAEFVAPGRVVALDASPLAIEAARATLAARGLLGGVELAVGDTLALPFEDGAFDVVHAHQVLQHVDDPVAALKEMRRVVRPGGTVAVRDAVYSAMSWFPQPEGMDLWLSAYMATARANGGEPDAGSRLLSWARRAGLAHVTASASSWCFAAERDRSWWSATWAERCFSSFGPRACELGLATAADLQAMAEGWRQWGASDDGWFAVVHGEILADV
>NZ_CP040503.1|WP_009199419.1|1951094_1952741_+|DUF5129-domain-containing-protein
MRRFFALFVDRFLSLLLFAVKVTAGLALVLVFPGFCVYWFAAGGSFHPSVEVRDEAGVLLGKPLVKEIEGLTLDKRVDIVVLTLPGPLSGSLDGAVLDYAHRQPDPTALLENPVPYPERFRDGLVILAVSPEGRKVGCYFGEDVQLSMDDQKDIQNAAKDQFRRSDWRGGVLSMAREYADAANSGAWETIGMFALAGVVSIGGAVWLFLYFRSGLKAFKNVRAARDYYSRVVRDYDSIGRYADLIPEDSSYGAEAIARYRAFCKEYARFPRIAEDFVGGFSGPDWFRKCAATSAKAFRKRAFALDSQGRAVVKAAELLTMSPGWKDIWTNEVGRVMEDAERILRLRESIGRLSYSEPHSVRAPFFEDAQELDAWVSVRLARLEALVLELETGETGPSDALEELDRMSDEIHDRAERLIRAAFRIGLSRRGNRILEREEGDLFRESYEQESSPSNEESYSGSWKVNGVSGSYNPYTTIRPAFDFPPPRPSNVGKTPLTFALILGAILTVVVRIVKAVFDDDSSDSSSGSSFSGSSSSGSSSSSGSSSSF
>NZ_CP040503.1|WP_040323329.1|1952880_1953681_-|methyltransferase
MNDVQQTLFFPLMGRADAARRWPDLFPDPWAEHAMGIREAEGSAAQQLGTFPAAVYGLRHLLTIREINAYLKDHPGAAVVNIGCGLDRIVHEIADADSLVYNVDFPEVIETRERWVEPHAREVALPYSATDHRWMDHVDACKGLVAIAAGVFYYFEVDEVKALVREMGARFPGSRLCYDAESPWVTAGSEKNIRRNGTPDARMPFRVKDPFSARTWSDRIDDVRVEFDFSSYLPAPKRAKLPRGIRFAFRFFRVFKGMYEVVITFK
>NZ_CP040503.1|WP_009199414.1|1954198_1955632_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MSNFERRLDARLVVSVAAVGITCFAGVVVETALNIAFPALMKEFGVTTAVVQWVTTAYLLVLSAIMPISSFLTRRFRNKTLFLAAMAVFIAGTAVCAAAPHFILLVVGRILQGIGAGIALPLMFNIVLQQAPVGKLGVMMGFATLIIAIAPAVGPSFGGFLVEAFGWRSIFLVLLPFLGLSLVLGALTVRQARDVEKVGFSPVQFLLVAAGFTALVVAVNAASESAWTSPKTLGLLALAFALLAGFTWISRRSDTPLLRVRIFTDRTYSLSLAYAVLIQAAVLALGYLIPYFAQVAKSVGSFAAGCLLLPGCIIGAILTPFGGRLLDRFGAKRPILAGAAVGVATLACFAAFGAEGSAVRLAFIYVFFPICQGLSLSNSMTHGLRSLPEDLQADGNAAFNTVQQLGGAVGTAVAAAIVNSAQAGSSGDVVAGTTAGAQTAFYVLLGAGAAAFAAALGVFLRPRRGQAEKRSRSGLID
>NZ_CP040503.1|WP_050758805.1|1955715_1956435_-|aminodeoxychorismate-synthase
MAQLPQPAHSMGRPLPSRRRVSLQPEEPPAPRWRASDMRAFFDVVFSLCGRHSDRPGIIAADGRGGSGKTSLASKLAAAAPGSEVLHIDDLDWNEPLFRWDHLLVAALSELRSSGSLDFTPPAWPRHGRKGSIAVAAGAPFVVVEGTGAGMRAVADLIDVSIWVQTDDDAAEERGIRRDTEEGTNSDAEESVRFWHWWMAGERAFFAADRPWERAHLIVSGERLPGLADNEIAWAEGPI
>NZ_CP040503.1|WP_050758804.1|1956601_1957441_-|hypothetical-protein
MAVLAAGRRHSVACTAEGRAVAAGYRRGGECAVDEWTDIVAVAAGNVHTATNTGRSHTIGLRADGSVAATGWNEHGQCDVDIWSDVVAISAGWRRTLAVRGDGAVLALGSNEEGQCDVEGWSDVSATACGDWHSLGLRRDGAVLAAGNNRYGQCDVEGWSDVVAVGAGCLHTVGLREDGTVVAAGWNRLGQCDVEDWSRVTAVAAGSRHTVALLTDGTVRAIGDNRDKQCNVQSWRRIVAIAAGSGHTLGLRDDGRVLAAGRNEYGQCDVGSWRAIRMP
>NZ_CP040503.1|WP_083786155.1|1957706_1960769_+|AAA-family-ATPase
MQHNRRGVAMVDPDRYLILAPPINGGEIVDKTKEVRRCSLLDRKVQVEYANCRTPYPYNHPNARLLEYSHEIRIEPEEQLRVRGRGWGGSLTAALFTDVWDREYSWVRIVSHDRAYTYPADAVEIVSSAAADGRAAEVRRYWKDVVKLLGPENWTRKGHERLDFIDPDSALAAYLNGVNGETQYPDQPVILPFNGNEDQRDAVAKALRNRISVIDGPPGTGKTETILNIVANLLQHSKLTAGIVSFSNAAVDNVRDKLDEAGLGFAAARLGNKRMVAEFLRGQESRMRALANWKAGRTVRSGGGETRVDSEASDGARQAGGHQIDGSKAAGRDDGPEGAEPSAAEPNGGGRNVDSEIAEAESRLVGIWRASRELAEVRRSIEECTLEFSHFERRMRGERFADLDGLPLLRKSSDKIVKYLAETAVRAELPGGLSGIVGRIRRHFEYGSLKSLDPRDADVVLRLQRAFYTQSLEELEERKRNLEETLARADEESVRKRHKALSRQALDGALRRRYRGAARESFDDEGLRRQTKDLLREYPVVLTTCHSIRSNLAEGTLLDWLIIDEATLTDVLSAALALSRARNVVVVGDLKQLAPVLDKKWAKALPAPPAPAYDVGKFSILESVKELYGESLPQTMLREHFRCAPEIIGFCNGMFYGGQLIPLADGPGEAAGPPLAMFKTAPGNHHRHIARGAVKGRYNQREIDVVMRETLAECGISPADLNVRRGSDLEVGFAAPFRLHADRLDQALEGAFGGRADGEAGGGWLSETVHKFQGRGARTMVFSTVLDESRDGRRALSFADDPRLVNVAVSRAKERFVLVTDDGEMRGSVNISALADYIRYQCPDQVVESRIVSVFDLLYRKHSERLAKFASGLRGKSKYKSENIMFTLLKDLLGESKYEGWLDVVFQVRLRDLVPDLTLLSERQRKFVRSTSAVDFVVYHAVTRRALLAIEVDGTAFHEDKPLQLRRDGIKESILRLCGVKVLSFQTNGSDEEGRMRQELDRVLAEGLPSSCGVPVGRSA
>NZ_CP040503.1|WP_009199409.1|1961052_1962546_+|glutamine-synthetase
MLEADPLALNPNPLVQDLGKPAEKFTRADILRFVRERDMPMLNLRYVGGDGRLKTLNFAIQSAAHLERVLTMGERVDGSSLFDFVDAVSSDLYVVPQLRTAFLNPFNPIPSLDIMCGFYDVNGDPLASAPQQVLRKAQDALEDATGCRLEALGELEYYLFSAEESLFPVEPQRGYHEASPFSKWEEVRTEALYHLAQMGCSVKYAHAEVGNFVADGVQAVQQEIEFLPVDVVRAADQMALAKWVVREVAHSHGIEVSFSPKIAVGQAGSGMHFHTRLMKDGVNQFSEGAGLTDAARRVIGGYLLHAASLTAFGNTVPTSFLRLVPRQEAPTAICWGDRNRSVLVRVPLGWQNLDDRMFRDANPQEGPAGALPNDSQTVELRSPDGSANVHLLLAGVTVAARIGLTDPAMLDYANSRHVSGDASQTVELEQLPTSCAEAARRLLAQRSAYEERGVFPAGLVDAWAQKLIDLGDETLREDIAEKRVRVEDLVKRYFHVG
>NZ_CP040503.1|WP_009199408.1|1962668_1963265_+|NAD(P)H-dependent-oxidoreductase
MKVLVNVFHPNLSASTVNEAWVERLEGEPEVTVRKIYELYPDGKIDVAAEQEALLAHDRIVFQHPFYWYSTPPLMKQWLDQVLTYNWAYGPKGRALEGREWVSAISTGGPAESYRAGGYNNFSMSELMKPLQQTANLVHLKFLPAFIFNGAVQATPADVEESAERLAKHILDPLLDPEKRLAALNEKMDGEGVELHVD

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Crispr_ID: NZ_CP040503_26

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040503_26

2411361-2411525

Orphan

Consensus_repeat	Method
AGGACGCCGCCCTCTCACGGCGGTAACGCGGGTTCAAATCCCGCTGGGGGTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040503_26

>merge|NZ_CP040503|26|2411361-2411525|CRISPRCasFinder
AGGACGCCGCCCTCTCACGGCGGTAACGCGGGTTCAAATCCCGCTGGGGGTACGAGTATGTGCGATTTATTCGCGCCTGCTCAACGGCATTGCCCCTATCGTCTAGTGGCCTAGGACGCCGCCCTCTCACGGCGGTAACGCGGGTTCAAATCCCGCTGGGGGTAC

>NZ_CP040503|26|25|2411361-2411525|CRISPRCasFinder
AGGACGCCGCCCTCTCACGGCGGTAACGCGGGTTCAAATCCCGCTGGGGGTAC	GAGTATGTGCGATTTATTCGCGCCTGCTCAACGGCATTGCCCCTATCGTCTAGTGGCCT
AGGACGCCGCCCTCTCACGGCGGTAACGCGGGTTCAAATCCCGCTGGGGGTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040503.1\|WP_009198938.1\|2405476_2406376_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP040503.1\|WP_009198943.1\|2402522_2403125_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225767
NZ_CP040503.1\|WP_040322708.1\|2417664_2419062_+\|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl\|CDD\|235490
NZ_CP040503.1\|WP_009198933.1\|2412569_2413463_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|377396
NZ_CP040503.1\|WP_009198932.1\|2413473_2414634_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP040503.1\|WP_138587206.1\|2409353_2411021_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_009198921.1\|2422219_2422903_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP040503.1\|WP_009198924.1\|2419140_2419797_+\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314
NZ_CP040503.1\|WP_009198922.1\|2421315_2422242_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_CP040503.1\|WP_009198947.1\|2399406_2400534_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|224747
NZ_CP040503.1\|WP_009198941.1\|2403346_2403733_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319923
NZ_CP040503.1\|WP_009198934.1\|2411627_2412419_-\|LD-carboxypeptidase	unknown	unknown	gnl\|CDD\|132883
NZ_CP040503.1\|WP_050758792.1\|2415431_2416259_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040503.1\|WP_040322711.1\|2407727_2409230_+\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_CP040503.1\|WP_009198923.1\|2419993_2421316_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|236486
NZ_CP040503.1\|WP_009198944.1\|2400906_2402379_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NZ_CP040503.1\|WP_009198939.1\|2403881_2405480_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226089
NZ_CP040503.1\|WP_009198937.1\|2406359_2407448_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133378
NZ_CP040503.1\|WP_009198926.1\|2416772_2417558_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP040503.1\|WP_009198949.1\|2397896_2399120_+\|arginine-deiminase	unknown	unknown	gnl\|CDD\|234949

Protein	Function_ID	Function_description	E-value
NZ_CP040503.1\|WP_009198938.1\|2405476_2406376_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	7.90227e-82
NZ_CP040503.1\|WP_009198943.1\|2402522_2403125_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|225767	COG3226, COG3226, Uncharacterized protein conserved in bacteria [Function unknown].	2.88764e-11
NZ_CP040503.1\|WP_040322708.1\|2417664_2419062_+\|3-isopropylmalate-dehydratase-large-subunit	gnl\|CDD\|235490	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit.	0
NZ_CP040503.1\|WP_009198933.1\|2412569_2413463_-\|DMT-family-transporter	gnl\|CDD\|377396	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ. DMT_YdcZ is a family of putative inner membrane exporters from both Gram-positive and Gram-negative bacteria.	7.53675e-30
NZ_CP040503.1\|WP_009198932.1\|2413473_2414634_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.68637e-61
NZ_CP040503.1\|WP_009198921.1\|2422219_2422903_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0.00306567
NZ_CP040503.1\|WP_009198924.1\|2419140_2419797_+\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	6.57583e-121
NZ_CP040503.1\|WP_009198922.1\|2421315_2422242_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	7.31211e-41
NZ_CP040503.1\|WP_009198947.1\|2399406_2400534_+\|serine/threonine-protein-kinase	gnl\|CDD\|224747	COG1834, COG1834, N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism].	7.06509e-15
NZ_CP040503.1\|WP_009198941.1\|2403346_2403733_-\|VOC-family-protein	gnl\|CDD\|319923	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	8.12702e-44
NZ_CP040503.1\|WP_009198934.1\|2411627_2412419_-\|LD-carboxypeptidase	gnl\|CDD\|132883	cd07062, Peptidase_S66_mccF_like, Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that MccF is involved in microcin degradation or sequestration in the periplasm.	7.61641e-44
NZ_CP040503.1\|WP_040322711.1\|2407727_2409230_+\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_CP040503.1\|WP_009198923.1\|2419993_2421316_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|236486	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated.	0
NZ_CP040503.1\|WP_009198944.1\|2400906_2402379_+\|MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.27189e-129
NZ_CP040503.1\|WP_009198939.1\|2403881_2405480_-\|hypothetical-protein	gnl\|CDD\|226089	COG3559, TnrB3, Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane].	2.7337e-55
NZ_CP040503.1\|WP_009198937.1\|2406359_2407448_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133378	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	3.15279e-16
NZ_CP040503.1\|WP_009198926.1\|2416772_2417558_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	4.27526e-41
NZ_CP040503.1\|WP_009198949.1\|2397896_2399120_+\|arginine-deiminase	gnl\|CDD\|234949	PRK01388, PRK01388, arginine deiminase; Provisional.	0

>NZ_CP040503.1|WP_138587206.1|2409353_2411021_+|hypothetical-protein
MRLARRIFWIRGPREWFRKPPKDPRPSRTRKYAVRRGIMQRVLVRELASALQNEANFSDGGRAEWAQGLPALSPVHFGELPSQMRLVFQEPKSRLFRRKLPRFLKLRAGTRGLASDDLKLLGDVVPNGAAVPSSWIIACTKGNVVPRSMAVASGEKCDGDKHDGGELHEGGGPPKDSGPLEGRPNDGGSSESHVRPAADRRESVERYVAGVVAWCERALEAGDEIELPRIVEMALSDATVGYAFGSYEEEIPIDDLCGEGLRTQLDRIAERLIGLPGLEWWSEGFDPASYTWHEEVPGSSTVRVERPGGVPAGSAGLAATSGAAEWGSRAPTICGAAWFPSSETEWPVLHSYRDLSASRFDREMWEDSVVDGRTCTEQWFGDDAGDCDVARLDRGVLAEGDGSRIASIHAPEDWMRLVARFPARLTPDVKAGWQGDAEGQMYTVDWQAARREIDGVYVSVAGALRSAFAPLALKDVLNLEGSTAVADSAALEGNPALDDSADLGDFATLKGSETVRNKENGEAGESHGCDPQTPLTMMTGWTPGSILWLNRPGVS
>NZ_CP040503.1|WP_040322711.1|2407727_2409230_+|glutamate--tRNA-ligase
MAITNAAGSDIRVRFCPSPTGAPHVGMVRTCLFNYAYARHVGGTFVFRIEDTDAARDSEDSFDAIVDSLTWMGLEWDEGVGVGGPHGPYRQSERGEIYRDVAAKLLAGGYAYESFSTPEEVEERHRAAGRDPKLGYDGFDRGLTEEQKAEYRAEGRKPVIRMRMPDADVSFTDLVRGEIVFKAGSVPDYVIVRANGDPLYTLTNPVDDAMMEITDVLRGEDLLSSTPRQIVLYRALEELGVAKFTPRFGHLPYVMGEGNKKLSKRDPQSNLLLHRERGVIPEGLLNYLALLGWAISPDNDVFTKDEMVAAFEIDAVNPNPARFDEKKCTAINAEHIRRLDVADYASRLVPFLAREGIVGSDKYEGLTDAERRILDAAAPLAQTRMQLLGEAPDLLRFLFVGAEDVVYNEKAVAKLKDSAPAALAGAAEAVRSMESFKPEELKEALDAKLVEGLGIKPRLAFGPLFVAMTGTNVSIPVVDSMAILGKDEALARIERLLARL
>NZ_CP040503.1|WP_009198937.1|2406359_2407448_-|MerR-family-transcriptional-regulator
MKVSEVAYLAGTTVRAVRWYHAVGLLPIPEGRPRDYGFDDLARLVRIRWLAESGMSLASIGHLLDGSSKDATEDFDSALERIDAEIQKLAAQRDRIEGLRELAKSDATISPLPASLDSLYTAVRSRLTNPRHIELLERDRVIASIIGAWDKFPDVALYSATEADIDAMVEGLEIFAEAMDADDVGPLVDRFVVVYTKLASKFGLAGLADNIVGISADFDRLLLATRVAYPDRKHRQFMELCLVRLGWVEPEAFEAAPKANASDHEVDWIRILIGLSGLANASDHGAETSAHRANHGAKASARGANAARKATKEENAKTTQDGAAEPAGAARAQEKAGSARAGEKAGAAHTHETKGEIDGGDH
>NZ_CP040503.1|WP_009198938.1|2405476_2406376_-|ABC-transporter-ATP-binding-protein
MAETIEVKGLVKAFGQLRALDSLDLAVEEGAVHGFLGPNGSGKSTTIRCLLGLYRPDAGTVRVFGMDPSASAHDINRRVAYVPGEVALWPNLTGQQALDALAALRGRRDEARERELIERFRLDPSKRIRTYSKGNRQKVILVAALSAPVDLLVLDEPTSGLDPLMEQIFGECIAQAKAEGRTVLLSSHILGEVQALCSHVTIIKDGVTVETGRLDRLRHLGAREIRVRGEESRLKSLFADVESKGVAVAWDEGDVVAEADAARVPAVLGAAVAAGLADITCTAASLEDLFLRHYEATVR
>NZ_CP040503.1|WP_009198939.1|2403881_2405480_-|hypothetical-protein
MNAKDFRTLFGVALRRQRLAFAAWIGSFCLVLAVVPNAYRNDLGSMELRRSVIEMMNSNAATRLLFGTVPQPGTVGQLVQWETGMLLLVFTAIAAILIVTTVGRRGEDDGLRELVEGTGVSRAVVFAVQAAVGTVFSLAAGFGCGFVLAVQAPLFSEISVAGSVCLGVSIALAGCAFSAIGLVASQLADDAVGARRISLVALFAAFSLRVGAVAAGWDWVQWLTPLGWKDLLEPYTADRFLLAIPAALAVLALAASAWRLYSRRELHGAYLKSANRSGSRLRAAGVFSLTLRLGRRRLLGWLVGVVATAALIGSMAGSFVTLTKKNADYSDLLSKMSGGGEATSQIVSIFSVIVGIVIVCESANAISSLAETEKKGILDVELASGTSRSRVVAAHAVAGAVESAILTAAGAVTLAVAVGLSLDWEHGREIAWKTATQWPACVCLVGVGCLLYALSRKLTAGVWALVGWSFALSWFGKLLELPEWASKTTLLGWSFSPSDTEHLPQALGLLAVGLAASALATAACRRRDILAS
>NZ_CP040503.1|WP_009198941.1|2403346_2403733_-|VOC-family-protein
MIDHISINVSNPEASIAFYAAALEPLGYRIVMEHGPVVGMGAPLPNAPENAPIPPDLWIVPAESPTPCHIAVSASSAKQVDAFYRAAIAAGGADNGEPGERPHYHPGYYAAFVLDPDGNNLEAVFHGN
>NZ_CP040503.1|WP_009198943.1|2402522_2403125_+|TetR-family-transcriptional-regulator
MRASDELGAASSGGAATLKGEARRRQIVEAAAALVREGGPSSVSHRAVARRAGCSLSATTYYFEGLEDLLHQAGALNISLWASRAERVAERVESRAAEDVAMAERVEAILSATLPSGQALIGHYAQLISAGDFAPVASAYRTGRSRLNAAVARVLAHLRIDLTADLVIAVVDGAAVSALSEGRDVKATARELLEFVCRRS
>NZ_CP040503.1|WP_009198944.1|2400906_2402379_+|MFS-transporter
MPHSLGGNESRQRKAQRLAPPRGEAKRPGGPSESEPGDDAGDAVAVSLRTSDSGDQSDEQHRVLRKAAGASFIGNFIEWFDYASYGYLAAVIGSVFFPKSDETAQLLSAFAIFALSFVLRPIGAVVWGAWGDRYGRRWALSWSILIMSGSTFLIGVLPGYSAIGIFAPLALFLLRMIQGFSASGEYAGAGTFLAEYAPPKHRGLYTSLVPASTAAGLLFGNVIVMPLQGFLDEADMHSWGWRIPFLLAGPLGLIGRYIRIHLEDSPVFNEMSQKAEKKSKHRVPLKTLLRSHRKRVAITFGVACLNAVAFYLLLTYMPTYFEKQLGIEATHAEAISAGTLAVYIVAIFFMGKISDMFGRRRMLVGACLAFIVLSIPLFWVMEQGNVVMIVAAEAVFALILTANDGTLATFLAESFPTEVRYSGFALSFNSANALVGGTAPLVATWLIKVTGTAIAPAFYLTCISVLALGAMCASRSIVRESASLAEENDA
>NZ_CP040503.1|WP_009198947.1|2399406_2400534_+|serine/threonine-protein-kinase
MAKIVNSWNDFDPLKRVILGRADNSVIPPEEPATSEKVPIDSEMRGMWGPRPTETVEKANAQLDYLAKVLQDNGVVVDRPTPLQWNQAIVTPDFRTDSGFTQMPPRDILLTVGNEIMASANSFRCRYFEYLAYWDLMGQYFEEDPEFKWTQAPRPRLTDKSYKHNYYDERITIEERLERTAAKDFVTTEVEPMWDAADVMRLGRDLFIQHGLTTNRKAMEWFKRYYPDLRVHAVNFPGDPYPIHIDATFVPLRPGLIINNPQRRLPEEQRKIFEANDWQIVDAAQPAHETPPPLCYSSVWLSMNCLVLDHKTVICEASEVHQMEQMDKLGMNVIPVPFRDAYPFGGGLHCATADVYREGGKEDYFPNQVEDPTLV
>NZ_CP040503.1|WP_009198949.1|2397896_2399120_+|arginine-deiminase
MKPYVGSEVGRLKQVLLHRPGKEMLRLTPSNKDDLLFDDVLWLERAQHEHDVFAETLRSRGVEVLYLADLLAEALADREARERVLDVVVTEEACGPGIEEAVRNYAESLPDAELAELLIAGVTKAELLDRADVQESLTLRTLGADDCLLAPLPNHLFTRDTSSWIYGGVSINPMCRPARVRESVNEEAIYLHHPRFADADFTVLGDGVGSGFASVEGGDVLVMGNRSVLVGLSERTSPQGVERLALQLFEAGEAERVVAVEMPKARAQMHLDTVMTMADEGTFVKYAGLGMLRSYTIRPGDAKSPLHVEANAPERMHAVIAEALGLDSVRVLTTPQDSLAAEREQWNDGANLLAVAPGAVVVYERNTVTNEYLSEQGIEVLPIPGNELGRGRGGPRCMSCPTVRAEN
>NZ_CP040503.1|WP_009198934.1|2411627_2412419_-|LD-carboxypeptidase
MALLRLVNCSNPLPDWARPKLPAAVRALADRGHELDCTEVLELDADRRWSPRLRARMLTEAFADDAVDAVFDVSGGDLANEALPHVDWDAVAAHPKPYFGFSDNSCIVNSIVAMTGQPAVLWNPAAGVERGFDAVDAALAGRALRPALTGAEGLAQKRWAGGNLRCFLKLAGTPYWPDLKGKALVVESLGGSLLSLATSLAQHTQIGSFEAIAGIVVGQLTEIDEAGERAAALELVREYAGGLPIAEAPGLGHSPDSEPATFS
>NZ_CP040503.1|WP_009198933.1|2412569_2413463_-|DMT-family-transporter
MIEYFALAVAVGCLVPVQSAMNTRLKVSYGTTIGASFVSFVIGTAFLGAIVVSESLNIIPPVSTPWWSYLGGAMGILALLTIITIFPHVGAVETVVLPVGGKILSGLAIDHFGLFNSQVQPISAYRLAGAGLAAAGMLLAVYGRGKSSRVGPRPKLIWRVMGILVGVYAALQAAFNGNLTKMLGSSIASGFVSYATGTILLLLLVVFSNQLPHKTTRGRWWMWLGGPVGALFVVGMAQLVPHLGTGVTLLVVLIGQLLGSMAIDHFALFGARKAHVTLFRLIGVAVLAGGMYVYYTF
>NZ_CP040503.1|WP_009198932.1|2413473_2414634_-|glycosyltransferase-family-4-protein
MRRTLLVTNDFPPRKGGIQTYLEGFARELDPDSLVVYCSSPPDGGADEYDAAQPWTTIRYPGTVMLPIPSVRREMQRIIREQSIEAVWFGASTPLGLMAKAAKAAGAGKVISTTHGHEVGWARVPAGRLALRKIFHDADVVTYLTKATLRRLRPLIGNTRIMRLPGGISPEDFAFSASWRHKLRARYGIGDEPTVVCISRLVERKGQDTLIRVWPRVLASSPRAKLVIVGKGPYQGGLRKMAQESPTAASIVFTGEVPFEELAAHYSLGDVFAMPCRTRAAGMDLEGLGIVYLEAYAAGLPVVAGDSGGAPEAVINGKTGVVCSGHHPAAVASALAYMLDNPSRAKEMGRSGLAWVDEEWRWSTLAAPLREELLTEPQKQALRPNY
>NZ_CP040503.1|WP_050758792.1|2415431_2416259_+|hypothetical-protein
MGISVPNDPSSKMTIEGRNGKVSVDLPFSGSASKAASSRAGTATFDNKNGSSTTPIVRKDGSAQINTVINDAKAPKRYAYKMQVPEGAKIQRAGSSVLVTKDEKMVAGIAPAWAKDAKGKSVPTHYEVKGNVVTQVVDHGGQYAYPIVADPWLGANLFGTLEKDRPGTDRSHGTVFSGKLSAWGSSVYRSTLPYRWGQVPSSGTWIIANLGWKEWKDRLVGQNPPQTLQQQYTCHAYYGYFVVGAGWHWDIELLRRSNPDWNKYPWSVVEHKCNW
>NZ_CP040503.1|WP_009198926.1|2416772_2417558_-|IclR-family-transcriptional-regulator
MDTVPGDDADGRNGDTLRDDSSGVGVLDKAASVFSALESGPQTLAQLVSATHLARPTVHRLAVALEHHRLVARDMQGRFILGPRLGELASAAGEDRLLASASPVLIALRDHTGESAQLFRRQGDQRVCVAAAERTVGLRDSIPIGATLSMKAGSAAQVLLAWEEPDRLHRGLHGANFTATNLSAVRRRGWAQSVSEREIGVASISAPVRGPSGRVIAAVSISGPVERMGHQPGRQHATAVVTAARRLTDVLQATEGLGAEL
>NZ_CP040503.1|WP_040322708.1|2417664_2419062_+|3-isopropylmalate-dehydratase-large-subunit
MGATLAEKVWADHVVKRGENGAPDLLFIDLQLVHEVTSPQAFEGLRLAGRPVRRPDLTVATEDHNTPTLDIDLPIADLTSRAQIEALRRNCEEFGVPIYSLGNADQGIVHVVGPQLGLTQPGMTIVCGDSHTSTHGAFGSLALGIGTSEVEHVLATQTLPLAPFKTMAINVDGRLKPGTTAKDVILAIIAKIGTNGAQGHVIEYRGEAIRSLSMEARMTICNMSIEAGARAGMVAPDETTFAYVKGRPNAPENWDEAVAYWRTLATDDDAEFDTVVELDADELEPFVTWGTNPGQGIGISGKVPEPADIADETQRKAAEGAIEYMGLTPGTPMREIDIDAVFIGSCTNGRIEDLRVAAKVIEGRQKAPKTRVMVVPGSARVRLQAEAEGLDKVFLDFGAEWRNAGCSMCLGMNPDQLSPGERCASTSNRNFQGRQGPGGRTHLVSPLVAAATAVKGKLATPSDLG
>NZ_CP040503.1|WP_009198924.1|2419140_2419797_+|3-isopropylmalate-dehydratase-small-subunit
MEKFTQHTGIGVPLRRSAVDTDQIIPAVYLKRITRTGFEDALFASWRKDPSFVLNKEEYRRGSVLVAGPDFGTGSSREHAVWALKDYGFRAVFAPKFADIFRGNAGKQGLVAGVVAQEDVEQLWKILETNPGAEITVDLESRTVHAEGFACRFDLDDYTRWRLMEGLDDVGITLQNEGAIEAYEASRPSFKPKTLPKKHLPPVAVVSARPVDRDAPLA
>NZ_CP040503.1|WP_009198923.1|2419993_2421316_+|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MVSKIRVLGGTPLRGEVTVRGAKNLVPKAMVAALLSAEQSKLRNVPLIRDVDVVSDLLRMHGATVDYDQEAGVLGITPGSINLPEDPVEMDKLAGSSRIPILFAGPLLHNLGEAFIPDLGGCHIGSRPVNFHLRVLEDFGARRIQEAAGMHLIAEKPLKAKPVHLPYPSVGATEQTLLTAVMAQGITELTNAAVEPEIMDLIAILQKMGAIISVDTDRTIRIEGVDKLRGYSHTALPDRIEAGSWACAALATGGDVFVRGAEQQSMTSFLNVFRKVGGEFDVQDEGIRFWHPGGELHSMALQTDVHPGFMTDWQQPLVVALTQATGISIVHETVYEERFGFTEALNEMGASIQTYRECLGGLPCRFGQRNFYHSAVIQGPTKLRAADIDVPDLRGGFSHLIAALAAEGESVVSGIDIIDRGYEHFMQKLRALGANVVKEG
>NZ_CP040503.1|WP_009198922.1|2421315_2422242_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MAEAMPLLTRLLARPALALAGALQKTRIAGAERIPPSGPLLVAANHTCHLDWLTMAIVVYRLGRAPRIAARADLFAVPVLGWIMRKTGQIPIYRSDAASAPKDGGSPASSMDAMARALAEGKTVVIFPESTFTRDPSDWPMKARTGVARLALADPDVAVVPVAHWGNEGLIDPWTGKVSWRKFGRWRTTCDVRIGEPVDLSAYRGRGVTHELLTEATEKVMAAVTDELKAIRAADVAAGNGPRHRRWDRAIDGDPREAGVLARHAEIAERQRRRARRKAERQRRRAPRKGEGRGKPSLKEKLSPSSRR
>NZ_CP040503.1|WP_009198921.1|2422219_2422903_-|hypothetical-protein
MKARLSAACAALVLAGSACSSASEEADGGKPKANPGAVASAQDSGASRSSSPTSAASTPGPSAASSSSAAPRASASPVAPTDWLAEGSQSDGFPTAAGHAFPSSSRVGSHPGYERVVVQYTGGAADLTWKTTWTSDPIDEKGERINVKGDVFLQVDVAGVREPSDVATLPPTLHPGSLAGLSTVKGVSVQYPFEGQHMVFIGLSAKNSYRIQVLKDPSRLVIDVKKG

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP040503_3	3.1\|463464\|54\|NZ_CP040503\|CRISPRCasFinder	463464-463517	54	NZ_CP040503.1	463386-463439	0	1.0
NZ_CP040503_23	23.1\|1843348\|33\|NZ_CP040503\|CRISPRCasFinder	1843348-1843380	33	NZ_CP040503.1	345726-345758	0	1.0
NZ_CP040503_12	12.1\|1234986\|49\|NZ_CP040503\|CRISPRCasFinder	1234986-1235034	49	NZ_CP040503.1	1235022-1235070	2	0.959

1. spacer 3.1|463464|54|NZ_CP040503|CRISPRCasFinder matches to position: 463386-463439, mismatch: 0, identity: 1.0

ggcggggcattccctgcgcgggcgcgaacggattgttgccagggcgcggcgcct	CRISPR spacer
ggcggggcattccctgcgcgggcgcgaacggattgttgccagggcgcggcgcct	Protospacer
******************************************************

2. spacer 23.1|1843348|33|NZ_CP040503|CRISPRCasFinder matches to position: 345726-345758, mismatch: 0, identity: 1.0

gcaaagcccaggccgatcccggcccgctctcac	CRISPR spacer
gcaaagcccaggccgatcccggcccgctctcac	Protospacer
*********************************

3. spacer 12.1|1234986|49|NZ_CP040503|CRISPRCasFinder matches to position: 1235022-1235070, mismatch: 2, identity: 0.959

agcggactgcccataggccggttccggcgcactgtaagcggactgccca	CRISPR spacer
agcggactgcccataggccggttccggcgcactgtaggccgactgccca	Protospacer
************************************.** *********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040503_7	7.1\|628564\|27\|NZ_CP040503\|PILER-CR	628564-628590	27	MT639651	Gordonia phage Portcullis, complete genome	43541-43567	5	0.815
NZ_CP040503_7	7.3\|628564\|28\|NZ_CP040503\|CRISPRCasFinder,CRT	628564-628591	28	MT639651	Gordonia phage Portcullis, complete genome	43541-43568	5	0.821
NZ_CP040503_7	7.5\|628692\|28\|NZ_CP040503\|CRISPRCasFinder,CRT	628692-628719	28	NC_010510	Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence	407467-407494	5	0.821
NZ_CP040503_7	7.5\|628692\|28\|NZ_CP040503\|CRISPRCasFinder,CRT	628692-628719	28	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	1411711-1411738	5	0.821
NZ_CP040503_7	7.5\|628692\|28\|NZ_CP040503\|CRISPRCasFinder,CRT	628692-628719	28	ASHF01000034	Streptomyces sp. GBA 94-10 plasmid pGBA1, complete sequence, whole genome shotgun sequence	62447-62474	5	0.821
NZ_CP040503_7	7.5\|628692\|28\|NZ_CP040503\|CRISPRCasFinder,CRT	628692-628719	28	NZ_CP008890	Dermacoccus nishinomiyaensis strain M25 plasmid unnamed, complete sequence	45489-45516	5	0.821
NZ_CP040503_7	7.5\|628692\|28\|NZ_CP040503\|CRISPRCasFinder,CRT	628692-628719	28	KJ510412	Mycobacterium phage ZoeJ, complete genome	24549-24576	5	0.821
NZ_CP040503_7	7.10\|629012\|28\|NZ_CP040503\|CRISPRCasFinder,CRT,PILER-CR	629012-629039	28	NZ_CP015586	Roseomonas gilardii strain U14-5 plasmid 2, complete sequence	49354-49381	5	0.821
NZ_CP040503_7	7.14\|629268\|28\|NZ_CP040503\|CRISPRCasFinder,CRT,PILER-CR	629268-629295	28	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	1755769-1755796	5	0.821
NZ_CP040503_7	7.5\|628692\|28\|NZ_CP040503\|CRISPRCasFinder,CRT	628692-628719	28	MT723940	Mycobacterium phage Ellie, complete genome	20834-20861	6	0.786
NZ_CP040503_7	7.5\|628692\|28\|NZ_CP040503\|CRISPRCasFinder,CRT	628692-628719	28	MF324915	Mycobacterium phage Amgine, complete genome	20750-20777	6	0.786
NZ_CP040503_7	7.5\|628692\|28\|NZ_CP040503\|CRISPRCasFinder,CRT	628692-628719	28	JN564907	Burkholderia phage AH2, complete genome	23930-23957	6	0.786
NZ_CP040503_7	7.10\|629012\|28\|NZ_CP040503\|CRISPRCasFinder,CRT,PILER-CR	629012-629039	28	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	1063185-1063212	6	0.786
NZ_CP040503_7	7.11\|629076\|28\|NZ_CP040503\|CRISPRCasFinder,CRT,PILER-CR	629076-629103	28	NZ_CP025809	Sulfitobacter sp. SK025 plasmid unnamed1, complete sequence	200429-200456	6	0.786
NZ_CP040503_7	7.11\|629076\|28\|NZ_CP040503\|CRISPRCasFinder,CRT,PILER-CR	629076-629103	28	NZ_CP054604	Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed5, complete sequence	143239-143266	6	0.786
NZ_CP040503_7	7.13\|629204\|28\|NZ_CP040503\|CRISPRCasFinder,CRT,PILER-CR	629204-629231	28	NZ_CP015523	Sphingomonas sp. NIC1 plasmid unnamed2, complete sequence	104218-104245	6	0.786
NZ_CP040503_7	7.15\|629332\|28\|NZ_CP040503\|CRISPRCasFinder,CRT,PILER-CR	629332-629359	28	NZ_CP045074	Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence	182586-182613	6	0.786
NZ_CP040503_7	7.15\|629332\|28\|NZ_CP040503\|CRISPRCasFinder,CRT,PILER-CR	629332-629359	28	CP040467	Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence	36851-36878	6	0.786
NZ_CP040503_7	7.16\|629396\|28\|NZ_CP040503\|CRT	629396-629423	28	NZ_CP017943	Phyllobacterium zundukense strain Tri-48 plasmid unnamed2, complete sequence	523819-523846	6	0.786
NZ_CP040503_7	7.16\|629396\|28\|NZ_CP040503\|CRT	629396-629423	28	MH271313	Gordonia phage Suzy, complete genome	17180-17207	6	0.786
NZ_CP040503_4	4.1\|514817\|33\|NZ_CP040503\|CRISPRCasFinder	514817-514849	33	NZ_CP053909	Hymenobacter sp. BRD128 plasmid unnamed1, complete sequence	73106-73138	7	0.788
NZ_CP040503_7	7.5\|628692\|28\|NZ_CP040503\|CRISPRCasFinder,CRT	628692-628719	28	NC_008036	Sphingopyxis alaskensis RB2256 F plasmid, complete sequence	10954-10981	7	0.75
NZ_CP040503_7	7.7\|628820\|28\|NZ_CP040503\|CRISPRCasFinder,CRT,PILER-CR	628820-628847	28	NZ_AP022566	Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence	233873-233900	7	0.75
NZ_CP040503_7	7.10\|629012\|28\|NZ_CP040503\|CRISPRCasFinder,CRT,PILER-CR	629012-629039	28	NZ_CP022366	Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence	305621-305648	7	0.75
NZ_CP040503_7	7.10\|629012\|28\|NZ_CP040503\|CRISPRCasFinder,CRT,PILER-CR	629012-629039	28	MN096362	Arthrobacter phage Vibaki, complete genome	37502-37529	7	0.75
NZ_CP040503_7	7.10\|629012\|28\|NZ_CP040503\|CRISPRCasFinder,CRT,PILER-CR	629012-629039	28	MH509447	Microbacterium phage Eden, complete genome	28955-28982	7	0.75
NZ_CP040503_7	7.13\|629204\|28\|NZ_CP040503\|CRISPRCasFinder,CRT,PILER-CR	629204-629231	28	NC_021289	Burkholderia insecticola plasmid p1, complete sequence	609631-609658	7	0.75
NZ_CP040503_7	7.3\|628564\|28\|NZ_CP040503\|CRISPRCasFinder,CRT	628564-628591	28	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	1926418-1926445	8	0.714
NZ_CP040503_7	7.3\|628564\|28\|NZ_CP040503\|CRISPRCasFinder,CRT	628564-628591	28	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	1992626-1992653	8	0.714
NZ_CP040503_7	7.3\|628564\|28\|NZ_CP040503\|CRISPRCasFinder,CRT	628564-628591	28	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	380178-380205	8	0.714
NZ_CP040503_7	7.5\|628692\|28\|NZ_CP040503\|CRISPRCasFinder,CRT	628692-628719	28	MN304818	Phage 71_18, complete genome	26345-26372	8	0.714
NZ_CP040503_7	7.6\|628756\|28\|NZ_CP040503\|CRISPRCasFinder,CRT	628756-628783	28	NC_011737	Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence	28895-28922	8	0.714
NZ_CP040503_23	23.1\|1843348\|33\|NZ_CP040503\|CRISPRCasFinder	1843348-1843380	33	NC_007714	Sodalis glossinidius str. 'morsitans' plasmid pSG2, complete sequence	8431-8463	9	0.727
NZ_CP040503_23	23.1\|1843348\|33\|NZ_CP040503\|CRISPRCasFinder	1843348-1843380	33	NZ_LN854559	Sodalis glossinidius str. 'morsitans' isolate B4 plasmid pSG2, complete sequence	19586-19618	9	0.727
NZ_CP040503_23	23.1\|1843348\|33\|NZ_CP040503\|CRISPRCasFinder	1843348-1843380	33	NC_007184	Sodalis glossinidius pSG2 plasmid from Glossina palpalis palpalis	9204-9236	9	0.727
NZ_CP040503_23	23.1\|1843348\|33\|NZ_CP040503\|CRISPRCasFinder	1843348-1843380	33	NC_007185	Sodalis glossinidius pSG2 plasmid from Glossina austini	9204-9236	9	0.727
NZ_CP040503_23	23.1\|1843348\|33\|NZ_CP040503\|CRISPRCasFinder	1843348-1843380	33	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	575532-575564	9	0.727
NZ_CP040503_23	23.1\|1843348\|33\|NZ_CP040503\|CRISPRCasFinder	1843348-1843380	33	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	1184636-1184668	9	0.727
NZ_CP040503_23	23.1\|1843348\|33\|NZ_CP040503\|CRISPRCasFinder	1843348-1843380	33	NZ_CP010657	Phaeobacter piscinae strain P71 plasmid pP71_a, complete sequence	74799-74831	9	0.727
NZ_CP040503_2	2.1\|434186\|32\|NZ_CP040503\|CRISPRCasFinder	434186-434217	32	NZ_CP045340	Vibrio sp. THAF190c plasmid pTHAF190c_b, complete sequence	516495-516526	10	0.688
NZ_CP040503_23	23.1\|1843348\|33\|NZ_CP040503\|CRISPRCasFinder	1843348-1843380	33	NZ_CP045481	Amycolatopsis sp. YIM 10 plasmid pAmyYIM10, complete sequence	4074-4106	10	0.697
NZ_CP040503_23	23.1\|1843348\|33\|NZ_CP040503\|CRISPRCasFinder	1843348-1843380	33	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	560205-560237	10	0.697
NZ_CP040503_23	23.1\|1843348\|33\|NZ_CP040503\|CRISPRCasFinder	1843348-1843380	33	NZ_CP010016	Burkholderia thailandensis 34 plasmid unnamed, complete sequence	139126-139158	10	0.697
NZ_CP040503_23	23.1\|1843348\|33\|NZ_CP040503\|CRISPRCasFinder	1843348-1843380	33	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	1489637-1489669	10	0.697

1. spacer 7.1|628564|27|NZ_CP040503|PILER-CR matches to MT639651 (Gordonia phage Portcullis, complete genome) position: , mismatch: 5, identity: 0.815

tgtcgcgcatcgtcgcagcgtacagct	CRISPR spacer
tcgcgcccatcgtcgcagcgtccagca	Protospacer
*  *** ************** ****

2. spacer 7.3|628564|28|NZ_CP040503|CRISPRCasFinder,CRT matches to MT639651 (Gordonia phage Portcullis, complete genome) position: , mismatch: 5, identity: 0.821

tgtcgcgcatcgtcgcagcgtacagctt	CRISPR spacer
tcgcgcccatcgtcgcagcgtccagcat	Protospacer
*  *** ************** **** *

3. spacer 7.5|628692|28|NZ_CP040503|CRISPRCasFinder,CRT matches to NC_010510 (Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence) position: , mismatch: 5, identity: 0.821

gcacaccgtcgaacacgcccgccttctc	CRISPR spacer
gcacccggtcgaacacgcccgccttgcg	Protospacer
**** * ****************** .

4. spacer 7.5|628692|28|NZ_CP040503|CRISPRCasFinder,CRT matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 5, identity: 0.821

gcacaccgtcgaacacgcccgccttctc	CRISPR spacer
tttcgccgtcgatcacgcccgccttctc	Protospacer
 . *.******* ***************

5. spacer 7.5|628692|28|NZ_CP040503|CRISPRCasFinder,CRT matches to ASHF01000034 (Streptomyces sp. GBA 94-10 plasmid pGBA1, complete sequence, whole genome shotgun sequence) position: , mismatch: 5, identity: 0.821

gcacaccgtcgaacacgcccgccttctc	CRISPR spacer
ggacaccgtcgagcacgcccgcctcgcc	Protospacer
* **********.***********. .*

6. spacer 7.5|628692|28|NZ_CP040503|CRISPRCasFinder,CRT matches to NZ_CP008890 (Dermacoccus nishinomiyaensis strain M25 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

gcacac-cgtcgaacacgcccgccttctc	CRISPR spacer
-cgaacgcgtcgaacccgcccgccttctg	Protospacer
 *. ** ******** ************

7. spacer 7.5|628692|28|NZ_CP040503|CRISPRCasFinder,CRT matches to KJ510412 (Mycobacterium phage ZoeJ, complete genome) position: , mismatch: 5, identity: 0.821

gcacaccgtcgaacacgcccgccttctc	CRISPR spacer
gcttgccgtcgatcacgcccgccttcgc	Protospacer
** ..******* ************* *

8. spacer 7.10|629012|28|NZ_CP040503|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015586 (Roseomonas gilardii strain U14-5 plasmid 2, complete sequence) position: , mismatch: 5, identity: 0.821

ttcattcgcagcagggccgcctcgttca	CRISPR spacer
ttcatccgcagcagggccgccccgaaga	Protospacer
*****.***************.**   *

9. spacer 7.14|629268|28|NZ_CP040503|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 5, identity: 0.821

atgttcctgccgggaagggtcaggtgtt	CRISPR spacer
ccgatcctgccgtgaagggccaggtgtt	Protospacer
 .* ******** ******.********

10. spacer 7.5|628692|28|NZ_CP040503|CRISPRCasFinder,CRT matches to MT723940 (Mycobacterium phage Ellie, complete genome) position: , mismatch: 6, identity: 0.786

gcacaccgtcgaacacgcccgccttctc	CRISPR spacer
tgaggccgtcgaacccggccgccttctc	Protospacer
  * .********* ** **********

11. spacer 7.5|628692|28|NZ_CP040503|CRISPRCasFinder,CRT matches to MF324915 (Mycobacterium phage Amgine, complete genome) position: , mismatch: 6, identity: 0.786

gcacaccgtcgaacacgcccgccttctc	CRISPR spacer
tgaggccgtcgaacccggccgccttctc	Protospacer
  * .********* ** **********

12. spacer 7.5|628692|28|NZ_CP040503|CRISPRCasFinder,CRT matches to JN564907 (Burkholderia phage AH2, complete genome) position: , mismatch: 6, identity: 0.786

gcacaccgtcgaacacgcccgccttctc	CRISPR spacer
acacgccgacgaacacgcccgcctgtac	Protospacer
.***.*** *************** . *

13. spacer 7.10|629012|28|NZ_CP040503|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 6, identity: 0.786

ttcattcgcagcagggccgcctcgttca	CRISPR spacer
ttcaatcgcagcagggcggcctcgcctg	Protospacer
**** ************ ******....

14. spacer 7.11|629076|28|NZ_CP040503|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025809 (Sulfitobacter sp. SK025 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

tgagttgattctcaatcacgggccttta	CRISPR spacer
gaagttgattatcaatgacgggccttcg	Protospacer
 .******** ***** *********..

15. spacer 7.11|629076|28|NZ_CP040503|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054604 (Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed5, complete sequence) position: , mismatch: 6, identity: 0.786

tgagttgattctcaatcacgggccttta	CRISPR spacer
gaagttgattatcaatgacgggccttcg	Protospacer
 .******** ***** *********..

16. spacer 7.13|629204|28|NZ_CP040503|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015523 (Sphingomonas sp. NIC1 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.786

cgaaaatcctccatcgcggcccgctgcc	CRISPR spacer
cactgatccgccatcgctgcccgctgcc	Protospacer
*.  .**** ******* **********

17. spacer 7.15|629332|28|NZ_CP040503|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045074 (Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

ctacggacgggacggggctctgcctgct	CRISPR spacer
agacgcacgggacggcgctctgcctgag	Protospacer
  *** ********* **********

18. spacer 7.15|629332|28|NZ_CP040503|CRISPRCasFinder,CRT,PILER-CR matches to CP040467 (Streptomyces albidoflavus strain UYFA156 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.786

ctacggacgggacggggctctgcctgct	CRISPR spacer
tggcggccgggacggtgctctgcctggt	Protospacer
. .*** ******** ********** *

19. spacer 7.16|629396|28|NZ_CP040503|CRT matches to NZ_CP017943 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.786

catgttctatagcggtgcgaaggtcgag	CRISPR spacer
catgttctatggcgatgcgaaggtgtca	Protospacer
**********.***.*********   .

20. spacer 7.16|629396|28|NZ_CP040503|CRT matches to MH271313 (Gordonia phage Suzy, complete genome) position: , mismatch: 6, identity: 0.786

catgttctatagcggtgcgaaggtcgag	CRISPR spacer
cgagtacgatagcggtgcgaaggtcggt	Protospacer
*. ** * ******************.

21. spacer 4.1|514817|33|NZ_CP040503|CRISPRCasFinder matches to NZ_CP053909 (Hymenobacter sp. BRD128 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

gaaattcctcaaagccgggcgtcagttcattta	CRISPR spacer
gaaatttctcgaagccgggcgtcagcgcagcaa	Protospacer
******.***.**************. ** . *

22. spacer 7.5|628692|28|NZ_CP040503|CRISPRCasFinder,CRT matches to NC_008036 (Sphingopyxis alaskensis RB2256 F plasmid, complete sequence) position: , mismatch: 7, identity: 0.75

gcacaccgtcgaacacgcccgccttctc	CRISPR spacer
tggcaccatcgaacacgcccgacttcat	Protospacer
  .****.************* **** .

23. spacer 7.7|628820|28|NZ_CP040503|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022566 (Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence) position: , mismatch: 7, identity: 0.75

accttgtgcgcaacctcgtgtacgagag	CRISPR spacer
acctcgtgcgcaacctcgtgttctgacc	Protospacer
****.**************** * ..

24. spacer 7.10|629012|28|NZ_CP040503|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 7, identity: 0.75

ttcattcgcagcagggccgcctcgttca	CRISPR spacer
ctggcccgcagccgggccgcctcgttcg	Protospacer
.* ...****** **************.

25. spacer 7.10|629012|28|NZ_CP040503|CRISPRCasFinder,CRT,PILER-CR matches to MN096362 (Arthrobacter phage Vibaki, complete genome) position: , mismatch: 7, identity: 0.75

ttcattcgcagcagggccgcctcgttca	CRISPR spacer
tggtcgagcagcagggccgcttcgttca	Protospacer
*   .  *************.*******

26. spacer 7.10|629012|28|NZ_CP040503|CRISPRCasFinder,CRT,PILER-CR matches to MH509447 (Microbacterium phage Eden, complete genome) position: , mismatch: 7, identity: 0.75

ttcattcgcagcagggccgcctcgttca	CRISPR spacer
cccgagcgcagcagggccgcctcgatct	Protospacer
..*.  ****************** **

27. spacer 7.13|629204|28|NZ_CP040503|CRISPRCasFinder,CRT,PILER-CR matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.75

cgaaaatcctccatcgcggcccgctgcc	CRISPR spacer
tgaaaatcctccaccgcggcgcgcgcga	Protospacer
.************.****** ***

28. spacer 7.3|628564|28|NZ_CP040503|CRISPRCasFinder,CRT matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 8, identity: 0.714

tgtcgcgcatcgtcgcagcgtacagctt	CRISPR spacer
ctggaaacatcgtcgcagcgtagagctt	Protospacer
.   . .*************** *****

29. spacer 7.3|628564|28|NZ_CP040503|CRISPRCasFinder,CRT matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 8, identity: 0.714

tgtcgcgcatcgtcgcagcgtacagctt	CRISPR spacer
ccggaaacatcgtcgcagcgtagagctt	Protospacer
.   . .*************** *****

30. spacer 7.3|628564|28|NZ_CP040503|CRISPRCasFinder,CRT matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 8, identity: 0.714

tgtcgcgcatcgtcgcagcgtacagctt	CRISPR spacer
ctggaaacatcgtcgcagcgtagagctt	Protospacer
.   . .*************** *****

31. spacer 7.5|628692|28|NZ_CP040503|CRISPRCasFinder,CRT matches to MN304818 (Phage 71_18, complete genome) position: , mismatch: 8, identity: 0.714

gcacaccgtcgaacacgcccgccttctc	CRISPR spacer
ccacaccgtcgagcacgcccgcgccgaa	Protospacer
 ***********.********* ..

32. spacer 7.6|628756|28|NZ_CP040503|CRISPRCasFinder,CRT matches to NC_011737 (Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence) position: , mismatch: 8, identity: 0.714

cactgaccaaagcggtctccttgtccca	CRISPR spacer
gtctgaccaaagaggtctccttgataat	Protospacer
  ********** ********** .

33. spacer 23.1|1843348|33|NZ_CP040503|CRISPRCasFinder matches to NC_007714 (Sodalis glossinidius str. 'morsitans' plasmid pSG2, complete sequence) position: , mismatch: 9, identity: 0.727

gcaaagcccaggccgatcccggcccgctctcac	CRISPR spacer
tgatgaatcaggccgatcccggccccctctcaa	Protospacer
  * .. .***************** ******

34. spacer 23.1|1843348|33|NZ_CP040503|CRISPRCasFinder matches to NZ_LN854559 (Sodalis glossinidius str. 'morsitans' isolate B4 plasmid pSG2, complete sequence) position: , mismatch: 9, identity: 0.727

gcaaagcccaggccgatcccggcccgctctcac	CRISPR spacer
tgatgaatcaggccgatcccggccccctctcaa	Protospacer
  * .. .***************** ******

35. spacer 23.1|1843348|33|NZ_CP040503|CRISPRCasFinder matches to NC_007184 (Sodalis glossinidius pSG2 plasmid from Glossina palpalis palpalis) position: , mismatch: 9, identity: 0.727

gcaaagcccaggccgatcccggcccgctctcac	CRISPR spacer
tgatgaatcaggccgatcccggccccctctcaa	Protospacer
  * .. .***************** ******

36. spacer 23.1|1843348|33|NZ_CP040503|CRISPRCasFinder matches to NC_007185 (Sodalis glossinidius pSG2 plasmid from Glossina austini) position: , mismatch: 9, identity: 0.727

gcaaagcccaggccgatcccggcccgctctcac	CRISPR spacer
tgatgaatcaggccgatcccggccccctctcaa	Protospacer
  * .. .***************** ******

37. spacer 23.1|1843348|33|NZ_CP040503|CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 9, identity: 0.727

gcaaagcccaggccgatcccggcccgctctcac	CRISPR spacer
tccattccaaggccgatcccggcccgcactacg	Protospacer
 * *  ** ****************** **

38. spacer 23.1|1843348|33|NZ_CP040503|CRISPRCasFinder matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 9, identity: 0.727

gcaaagcccaggccgatcccggcccgctctcac	CRISPR spacer
tcgccgccggggccgatcccggcccgctcgccg	Protospacer
 *.  *** .******************* *

39. spacer 23.1|1843348|33|NZ_CP040503|CRISPRCasFinder matches to NZ_CP010657 (Phaeobacter piscinae strain P71 plasmid pP71_a, complete sequence) position: , mismatch: 9, identity: 0.727

gcaaagcccaggccgatcccggcccgctctcac	CRISPR spacer
gcaaggcccagcccgatcccggccagaacaaca	Protospacer
****.****** ************ *  *

40. spacer 2.1|434186|32|NZ_CP040503|CRISPRCasFinder matches to NZ_CP045340 (Vibrio sp. THAF190c plasmid pTHAF190c_b, complete sequence) position: , mismatch: 10, identity: 0.688

tttctggcctagaacgtctgcttcgttctgca	CRISPR spacer
gtaatggcctaaaacgtctgctttgttaccat	Protospacer
 *  *******.***********.*** .

41. spacer 23.1|1843348|33|NZ_CP040503|CRISPRCasFinder matches to NZ_CP045481 (Amycolatopsis sp. YIM 10 plasmid pAmyYIM10, complete sequence) position: , mismatch: 10, identity: 0.697

gcaaagcccaggccgatcccggcccgctctcac	CRISPR spacer
ggctgcccccggccggtcccggcccgctctggg	Protospacer
*   . *** *****.************** .

42. spacer 23.1|1843348|33|NZ_CP040503|CRISPRCasFinder matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 10, identity: 0.697

gcaaagcccaggccgatcccggcccgctctcac	CRISPR spacer
tccgttccaaggccgatcccggcccgcactacg	Protospacer
 * .  ** ****************** **

43. spacer 23.1|1843348|33|NZ_CP040503|CRISPRCasFinder matches to NZ_CP010016 (Burkholderia thailandensis 34 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.697

gcaaagcccaggccgatcccggcccgctctcac	CRISPR spacer
gagcggccgaggccgatcccggcgcgctcggcg	Protospacer
* . .*** ************** *****

44. spacer 23.1|1843348|33|NZ_CP040503|CRISPRCasFinder matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 10, identity: 0.697

gcaaagcccaggccgatcccggcccgctctcac	CRISPR spacer
tccgttccaaggccgatcccggcccgcactacg	Protospacer
 * .  ** ****************** **

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040503

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection