CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040505	Schaalia cardiffensis F0333 chromosome, complete genome	37 crisprs	cas2,csm3gr7,cas10,cas6,DEDDh,cas3,DinG,cas4,WYL,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	1	43	1	0

1. NZ_CP040505

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040505_1

• CRISPR_ID: NZ_CP040505_1
• CRISPR_location: 8232-8337
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP040505_1

Consensus_repeat	Method
TAGTCCCTCCTTTTGTCGGGATCCCC	CRISPRCasFinder

spacers of NZ_CP040505_1

>1.1|8258|54|NZ_CP040505|CRISPRCasFinder
TCCACTAAGGAGGGGGTTTGTGAGTGGAGGGGTTGGCGGAGTGTGGAGGGGTTG

CRISPR arrays and Neighbor proteins around NZ_CP040505_1

CRISPR arrays

The CRISPR arrays of NZ_CP040505_1

>merge|NZ_CP040505|1|8232-8337|CRISPRCasFinder
TAGTCCCTCCTTTTGTCGGGATCCCCTCCACTAAGGAGGGGGTTTGTGAGTGGAGGGGTTGGCGGAGTGTGGAGGGGTTGTAGTCCCTCCTGTTGTCGGGATCCCC

>NZ_CP040505|1|1|8232-8337|CRISPRCasFinder
TAGTCCCTCCTTTTGTCGGGATCCCC	TCCACTAAGGAGGGGGTTTGTGAGTGGAGGGGTTGGCGGAGTGTGGAGGGGTTG
TAGTCCCTCCTGTTGTCGGGATCCCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005962589.1|7068_7314_-|heavy-metal-associated-domain-containing-protein	unknown	unknown	gnl|CDD|238219
NZ_CP040505.1|WP_005962563.1|16454_18170_+|hypothetical-protein	unknown	unknown	gnl|CDD|238287
NZ_CP040505.1|WP_131247207.1|3892_6439_-|HAD-IC-family-P-type-ATPase	unknown	unknown	gnl|CDD|319783
NZ_CP040505.1|WP_005962570.1|11491_13222_+|glycoside-hydrolase-family-13-protein	unknown	unknown	gnl|CDD|200471
NZ_CP040505.1|WP_005962565.1|16088_16451_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962595.1|2891_3728_+|glycosyltransferase	unknown	unknown	gnl|CDD|133022
NZ_CP040505.1|WP_040313575.1|6431_6692_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962561.1|18539_19343_+|hydroxyethylthiazole-kinase	unknown	unknown	gnl|CDD|236477
NZ_CP040505.1|WP_005962568.1|13422_14895_-|adenylosuccinate-lyase	unknown	unknown	gnl|CDD|236452
NZ_CP040505.1|WP_005962555.1|20801_21449_+|thiaminase	unknown	unknown	gnl|CDD|381700
NZ_CP040505.1|WP_005962557.1|19998_20805_+|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl|CDD|180561
NZ_CP040505.1|WP_005962597.1|2455_2758_+|acylphosphatase	unknown	unknown	gnl|CDD|224174
NZ_CP040505.1|WP_138588728.1|8851_10510_+|alpha/beta-fold-hydrolase	unknown	unknown	gnl|CDD|367272
NZ_CP040505.1|WP_005962599.1|1458_2340_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962586.1|7786_8071_-|metal-sensitive-transcriptional-regulator	unknown	unknown	gnl|CDD|376835
NZ_CP040505.1|WP_005962559.1|19339_20002_+|thiamine-phosphate-synthase	unknown	unknown	gnl|CDD|234590
NZ_CP040505.1|WP_131247289.1|14983_15688_-|fructosamine-kinase	unknown	unknown	gnl|CDD|225547

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005962589.1|7068_7314_-|heavy-metal-associated-domain-containing-protein	gnl|CDD|238219	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.	1.46808e-12
NZ_CP040505.1|WP_005962561.1|18539_19343_+|hydroxyethylthiazole-kinase	gnl|CDD|236477	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated.	2.47677e-96
NZ_CP040505.1|WP_131247207.1|3892_6439_-|HAD-IC-family-P-type-ATPase	gnl|CDD|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	4.07193e-162
NZ_CP040505.1|WP_005962570.1|11491_13222_+|glycoside-hydrolase-family-13-protein	gnl|CDD|200471	cd11332, AmyAc_OligoGlu_TS, Alpha amylase catalytic domain found in oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), trehalose synthase (also called maltose alpha-D-glucosyltransferase), and related proteins. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Trehalose synthase (EC 5.4.99.16) catalyzes the isomerization of maltose to produce trehalulose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_CP040505.1|WP_005962595.1|2891_3728_+|glycosyltransferase	gnl|CDD|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	7.72809e-17
NZ_CP040505.1|WP_005962563.1|16454_18170_+|hypothetical-protein	gnl|CDD|238287	cd00519, Lipase_3, Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. .	0.00460178
NZ_CP040505.1|WP_005962568.1|13422_14895_-|adenylosuccinate-lyase	gnl|CDD|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
NZ_CP040505.1|WP_005962555.1|20801_21449_+|thiaminase	gnl|CDD|381700	cd19365, TenA_C-like, uncharacterized TenA_C proteins. This family of TenA proteins belongs to the TenA_C class as it has a conserved active site Cys residue; the double Glu residues identified in the active site of TenA_E from the archaeon Pyrococcus furiosus is conserved in this family. TenA_C proteins (EC 3.5.99.2) catalyze the hydrolysis of the thiamin breakdown product 4-amino-5-amino-methyl-2-methylpyrimidine (amino-HMP) to 4-amino-5-hydroxymethyl-2-methylpyrimidine (HMP) in a thiamin salvage pathway. It has also been suggested that TenA proteins act as transcriptional regulators based on changes in gene-expression patterns when TenA is overexpressed in Bacillus subtilis, however this effect may be indirect. This family includes mostly uncharacterized TenA_C- like proteins.	9.83232e-96
NZ_CP040505.1|WP_005962557.1|19998_20805_+|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl|CDD|180561	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed.	4.30906e-121
NZ_CP040505.1|WP_005962597.1|2455_2758_+|acylphosphatase	gnl|CDD|224174	COG1254, AcyP, Acylphosphatases [Energy production and conversion].	1.88699e-28
NZ_CP040505.1|WP_138588728.1|8851_10510_+|alpha/beta-fold-hydrolase	gnl|CDD|367272	pfam02956, TT_ORF1, TT viral orf 1. TT virus (TTV), isolated initially from a Japanese patient with hepatitis of unknown aetiology, has since been found to infect both healthy and diseased individuals and numerous prevalence studies have raised questions about its role in unexplained hepatitis. ORF1 is a large 750 residue protein. The N-terminal half of this protein corresponds to the capsid protein.	0.000126398
NZ_CP040505.1|WP_005962586.1|7786_8071_-|metal-sensitive-transcriptional-regulator	gnl|CDD|376835	pfam02583, Trns_repr_metal, Metal-sensitive transcriptional repressor. This is a family of metal-sensitive repressors, involved in resistance to metal ions. Members of this family bind copper, nickel or cobalt ions via conserved cysteine and histidine residues. In the absence of metal ions, these proteins bind to promoter regions and repress transcription. When bound to metal ions they are unable to bind DNA, leading to transcriptional derepression.	1.96447e-32
NZ_CP040505.1|WP_005962559.1|19339_20002_+|thiamine-phosphate-synthase	gnl|CDD|234590	PRK00043, thiE, thiamine phosphate synthase.	8.75747e-62
NZ_CP040505.1|WP_131247289.1|14983_15688_-|fructosamine-kinase	gnl|CDD|225547	COG3001, COG3001, Uncharacterized protein conserved in bacteria [Function unknown].	1.63333e-19

Protein sequences

>NZ_CP040505.1|WP_005962586.1|7786_8071_-|metal-sensitive-transcriptional-regulator
MTYGYSSSTDRYLARLRRIEGQVRGLQRMVSEGEYCIDILTQMSAVQSALHAVALGLLEDHMNHCVINAAKESDEAGREKIQEATHAIARLVKS
>NZ_CP040505.1|WP_005962589.1|7068_7314_-|heavy-metal-associated-domain-containing-protein
MTMEIDRSIELAVNGMTCGHCVKSVTEELEEVRGVTNVEVILNSGATSKVTVFTSKGVDDDALREAITEAGFELVSISRDF
>NZ_CP040505.1|WP_040313575.1|6431_6692_+|hypothetical-protein
MVTERRDGEEGACEPVLGEEGTAECSDGEGVVSETAFGEEVPAELGFVEGAVTEEAFVEGAEVLGVEGAESVLGVDTVFLLKAPWS
>NZ_CP040505.1|WP_131247207.1|3892_6439_-|HAD-IC-family-P-type-ATPase
MTTSSPNAISETTPSSTASSPGVGEGARERADNLEHRLLISAPFAILALVLSMAPPLQFSGWQWVVALASIPVTTWGAWPFHKAAFAAGRHGSTTMDTLVSLGVIASSLWSWWALLFGGAGELGMRMSMTFLPRASQATHAQIYFEGACTIVVFLLTGRWMEARARYRAGDALRSLLELGAKEAIRVDIDPTSGARSFVRIPAADLAINDLFLVKPGEKVATDGVIVEGATALDTSLLTGESAPVDVSEGDTVTGATMNTWGSILVKATRVGADTTLARIGRMVTEAQAGKAPVQRLADSISSIFVPLVIGVFLLTLAGWLIWGAPLQASFTAAVSVLVVACPCALGLATPTALLVGSGRASQLGIVIKSAEILEQTRSIDTILLDKTGTVTTGRMFLEEVCATSGVKTTAEVLCDEERGSEEISEEEALAVAAGVESASEHPIARAILAGAHERGITPTQVTAFTNHAGLGASAIIHRPDGPALALVGRATWLADMGVTLSEEHHRALAEAKRRGASAVVAAIVATWIDEGGAHSSTEPTGSGHVLPKEDTPLPLATITMNVQGMTCASCVRRVERKLGKLEGVSAQVNLATETATILLSSEHSNEELERVVDKAGYSGTILERHEASELVPASPSLDENGEEERETQERVLPATLEGVKALAVLILSDTVKPSSAEAIERLKELDIEPILLTGDNEAAARRVAEQVGIHRVIAQVMPDEKRDVVASLQEQGHVVAMVGDGVNDAAALAQAGVQGLGIAMGSGTDVAIEVADITLMNSELTSVATAIRISRRTLRIIKGNLFWAFAYNVAMIPLAIAGLLNPMFASAAMAFSSVFVVLNSLRLRNAD
>NZ_CP040505.1|WP_005962595.1|2891_3728_+|glycosyltransferase
MNLLGSADPHAPQRVAAIIPAHNVGRDIAPTIRACRAIPGVDLLIVVDDGSDDNTGSYARAAGAVVVRHSVERGRASAIETGVKVAAMRDHADWPPRLLLILSADLGESAVEASALVEAVMTGEADLACAAPASTEQHSGRSHAKNMARARIRRSTGWEPVCPLSLVRCATREAIQASMPFMKGYGLEIAMTIDVLVAGLSVVEIPCHFEHSGADKSLGELKPSLRFADAALASARLTVRRVRLPGAHRLRHTTPQGIGIPFPRPARDRTAEEAQAQA
>NZ_CP040505.1|WP_005962597.1|2455_2758_+|acylphosphatase
MSGQLAQARIRTVSARIYGRVQGVGFRWNCQHEAERLALVGEVRNRADGSVCVIAQGSADGVARLIVWLYKGPKWASVEDVLVEDLPAGSYMGDTFSIRG
>NZ_CP040505.1|WP_005962599.1|1458_2340_+|hypothetical-protein
MGKASRRKKVVNPAALAQYRAPIPFVARPFEGLPREVELVAMREIIPCATLTARTNADHGFVDFDFVTALPDGRGAMVRGDGRILVALQTRSNSGDLSHDAGAALLNAISAKQNGDEGLVDFDVRDPSERLQDILDPDSFGEMVLEENFAFWLNPDEDWDEATRRALEENHNEIIPTVKVEGVEGMYWCEMNRNFVRYLSDVEESPLFDALARVQAAGKANLGEGSRFIGAFRACGIAIPVFELAEGVRAEDIVKEAGVLEEAIAAALKVKEPLTPEERRARQGMVSRQVTIR
>NZ_CP040505.1|WP_138588728.1|8851_10510_+|alpha/beta-fold-hydrolase
MATRRRASHVPAPRRRPRVRVRRRRRRMYARRRVPHSYPPAEVRFTLIPLLPVLLATGALGLVAEIQSLPEGWREAAREKSEALGVDTSERSQRIFFDEPGLDTLFVRGLAGAAGTLNRALSRVLRVEIALDRGRGGERARRAAALLPLLPSRSYDALMTGMLTVLTAIGAARGGAVHVTLLRDSAHPEQSLSPRPGSPQVHLRRPKPPESLRDMCADIDDMYWSMSAGHTLKITRVGEGEIRRWLLSLPGTAHTDFHSTENPADFESNIREMLGLESAMRVGVVKALHHAMALDGVEPAGYSKEPVMICGHSQGGMVAVALAALPPQKAGVDVEAILATGAPARRIRIREDVTMVSVQHDQDVIPSMDGTPARAPDQRVHVGRSLVRPKKSPLYYAHSSATYTETVRHLERKVRVNPWGRLASSVAALTDFLPQIDEETRVFFYEVWQELLEPTRTDTEDAFVALDRAEDFEPVDYHMDWSPTPLITLPEFSMSAFAPYSRLVSDYVKKVADTPRRILKSMRIPKTIRIGGHRAVPGFERSQEAFRKDIRS
>NZ_CP040505.1|WP_005962570.1|11491_13222_+|glycoside-hydrolase-family-13-protein
MNDETSQSLGSTAAQAPSLTPGTPLGLGPSSRWWRNAVAYQVYIRSFRDFDGDGIGDIEGLRHCLPELADLGVKIIWINPCYPSPQRDHGYDIADYRAINPEYGSLEGFELMLAEAHALGIRVVMDIVPNHASVEHAWFQEAIAAEPGSPERARFIFTEGEDGGETPPNTWTSVFGGGAWHRVEDGRENPQWYLHLFDWSQPDFNWRNPQVREEFLEILRFWFERGVDGFRIDVAHGLVKPARIPRGEGVGAEGLWGRPEVHEIYEEWRALADSYEEKKYFIGEVWVDSAEKLARFTEPGRLHQSFAFELLVQPWFAYRLRRSIERAFAVAGAEEGPAWALSNHDVHRVVTRLGQEQVDRDPDPRDMLADARRRWPVDVELGVRRAKAEAGLLFALPGTVYVYQGEELGLPEVLDLPDEVRQDPIFTRTGGAEFGRDGCRVPIPWSASGPSMGFGPEGGAKPWLPQPDSFRGCARDLEKADPNSMLSLYKRLSRLRPELLGGASRVEWIDAVPKEVVAFRAGSLVCATNTADEEREAPLIEGASFLLNTADLVDSSGCGAKGSVLPANSTSWWRLG
>NZ_CP040505.1|WP_005962568.1|13422_14895_-|adenylosuccinate-lyase
MSADWSTLFSPSHGYSDLAASGEPLSPLDGRYRTAVEPLANHLSEAGLNRARVHVEIEWLLHLLDKEVLPGAPSLSNAEREYLRALPRSFSEAEIRRLAHFEATTRHDVKAVEYLIAEHLDKAAHVLGPNTCLPGLREVVHIFCTSEDINNLAYALTVKAAIEQVWLPSARALLDRLHRLSEVGADVPMLAHTHGQPATPVTMGKEMAVFAHRFARQIRRVEACEYLGKINGATGTWAAHIVSVPGADWPKIAREFVEGLGLSWNPITTQIESHDWQAELYSDVARAGRIAHNLATDCWTYISMGYFHQNLAAQGSTGSSTMPHKVNPIRFENAEANLEVSGALLDSLASTLVTSRMQRDLTDSTTQRNIGIALGHSILAYSNLVRGLDGIDLDAERMAEDLDANWAVLGEAVQQAMRAAAIAGHTGMANPYERLKELTRGHEVDAAAMRDFISTLGLPAEVEERLLALTPASYIGAAPQIARWVLPRER
>NZ_CP040505.1|WP_131247289.1|14983_15688_-|fructosamine-kinase
MGEARLPLLHEGAPASWGEFYAQYRILPYIDSPGFTPDQRTALGMLCDRLASGEFDHGQPKLLHEGALTKDGTGEKEVAPTRDKTGEKQDPLVGEKKGTLAGEKQHTLPEDKSRDAEPTLPTPAPYRAQHACGHMAARTHGDLWNGNVIWTPSGAVLIDPAAQGGHAEEDLAALAVFGFPMLERVLAAYDEASALADGWRDRVGLHQLHILTIHVHLFGAAYAPEVMNILRRFV
>NZ_CP040505.1|WP_005962565.1|16088_16451_+|hypothetical-protein
MSAGVLIAAQDARDNLRIVAAELEGAVCRLGLERFDGWEGNAAQGARSRLVELCSMLESARSQAEFALNEAEARVQFVEDSLAAAAFAGASSSGGAFFGSGFASLADSDAELFGASVMGR
>NZ_CP040505.1|WP_005962563.1|16454_18170_+|hypothetical-protein
MEAFGRFLVTNGETQVDTEALFAAAARLEALACDLEELEYRARRAGEDTLAISSEDFAGAWQARVAAESAEQGILTARARLIELVDSVRFAANLYCEAEARALSLSEPLTDGELALRGVAGMSMLFPGPAGAGGVLLSLLLSSRGPRSSGIDLNHHQATSSYFDWLARLVATGSNARIVAEIMEFTSGAGDGFAGVRLQRDLAAISRALMDTPFCEEDAGGLRGTKEAAVRVAWLSSFLGASVFGAPKGVEVRSGQGLPPGRDHVLVNPGGGVSRGFAKAGETNLRVIDLLSSASLVPGGTRSLTRFVGHRLPLPGTGLPTPTPASSVPTPKEPTALLDHLASLDGSSDSGQFMILRHETPLGDGTSSRSWSVVVRGTQKWGVGASNPQDMLTNFQGVGGLDTDQKRAVLAAMEMAGIDKGEPVEFVGHSQGGIVAADLATDQTLCQDYSVVSALTAGSPIAGSVPEGGVRVLALENTRDIVPGLDGANNAPGVVTVHFDGEPYIPEGKEGGKVVAHDIGLYRNALADLQASEGEELAEVRAWEEARSSRMGFSSRTRTTAFVFDTQRVGY
>NZ_CP040505.1|WP_005962561.1|18539_19343_+|hydroxyethylthiazole-kinase
MITHATASTALNAVRETTPLVSCITNSVVTNFTANALLAVGAAPAMVDIVGEAGPFASIASALLINLGTPTPEQREAARQAARAAHDAGVPWVLDPVAVGALVHRTALAHELLDFKPTVIRGNASEIIALAGTGIGGRGVDAADEVDAALDAARALAQKAECVVAISGAVDAIVSVSEILRVGGGAEMLTRVTGGGCALGAVSAAFVSAGRTKGLGDLESVAACHIAYSAAAERAESQAAGPGTFAPLFLDALYSLEGAELKRIPLS
>NZ_CP040505.1|WP_005962559.1|19339_20002_+|thiamine-phosphate-synthase
MRTAPDLRVYFVTDAGLCESAGRTVRETVIAAVEGGATCVQLRAKDSDGRPFLEEVLEVAKAVGEKVPVIVNDRVDVFLAARALGAQVAGVHVGQSDLPASLVRTLIGEDAYLGLSIGTQEEAQAAREEGAADHVGLSVLRTTATKTDTPDVLGFEGCERLKRIVGIPAVAIGGVGVDDMAQLARIGIDGGAIVSAICCAPDPAATAAQLLAQWNEGAQE
>NZ_CP040505.1|WP_005962557.1|19998_20805_+|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MTRTVTALTIAGSDPSGGAGIQADLKAMSANGAYAMSVITALTAQSTRGVTGVHAVPLDFVRLQLDTVLADIRPGATKIGMLATAELAALVAEYLPTLENTVLDPVMVATSGDPLLEPDARAEVRRLCTLVELITPNLSEAAVLLECERARNVEEMIEQAKALRELGVKRALVKGGHLDEDASDVFIDEDGPLVLTGRRIATQNTHGTGCTLSSAIAALRPRRHTWVDAVKDAKAYLTEAIAHADSLGVGHGHGPIHHFHAIWPKEER
>NZ_CP040505.1|WP_005962555.1|20801_21449_+|thiaminase
MSFTDELWQGIVPIRQAIEDLDFLRGLGEGTLSRERFDYYMRQDAGYLGTYARALAGLASMASDPDDLVFWAGCARDSILVERSLHASHVEVDGPLEVSPTSRAYQSFLLACLASGEYAVAASAVLPCFWIYQSVGDSLLEKAGELENHAYGDWIGMYADPAFAEQTMIVRSIVDRLAEQVSEETRGRMREAFETACRYEWMFWDAAWRMEAWPI

Crispr_ID: NZ_CP040505_2

• CRISPR_ID: NZ_CP040505_2
• CRISPR_location: 47932-48023
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP040505_2

Consensus_repeat	Method
GGGCGGGCAGTGATCGACTCATGACAATGC	CRISPRCasFinder

spacers of NZ_CP040505_2

>2.1|47962|32|NZ_CP040505|CRISPRCasFinder
ACACAACTGTGGCCAGCGCGGGTCGCTGAGCC

CRISPR arrays and Neighbor proteins around NZ_CP040505_2

CRISPR arrays

The CRISPR arrays of NZ_CP040505_2

>merge|NZ_CP040505|2|47932-48023|CRISPRCasFinder
GGGCGGGCAGTGATCGACTCATGACAATGCACACAACTGTGGCCAGCGCGGGTCGCTGAGCCGGGCGGGCAGTGATCGACTCATGACGATGC

>NZ_CP040505|2|2|47932-48023|CRISPRCasFinder
GGGCGGGCAGTGATCGACTCATGACAATGC	ACACAACTGTGGCCAGCGCGGGTCGCTGAGCC
GGGCGGGCAGTGATCGACTCATGACGATGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005962523.1|55905_56682_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	unknown	unknown	gnl|CDD|274164
NZ_CP040505.1|WP_131247197.1|57500_57767_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962524.1|54001_55882_+|ribonucleoside-triphosphate-reductase	unknown	unknown	gnl|CDD|236212
NZ_CP040505.1|WP_005962533.1|44611_44983_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962538.1|39096_39915_-|HAD-family-hydrolase	unknown	unknown	gnl|CDD|319796
NZ_CP040505.1|WP_131247201.1|51732_52260_-|histidine-kinase	unknown	unknown	gnl|CDD|341122
NZ_CP040505.1|WP_005962519.1|58520_59105_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962540.1|36855_37824_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962530.1|45886_46378_-|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl|CDD|153102
NZ_CP040505.1|WP_005962527.1|51253_51736_-|hypothetical-protein	unknown	unknown	gnl|CDD|341122
NZ_CP040505.1|WP_131247199.1|52343_53522_+|phosphatase-PAP2-family-protein	unknown	unknown	gnl|CDD|239486
NZ_CP040505.1|WP_051057843.1|44943_45342_+|flp-pilus-assembly-TadE/G-like-family-protein	unknown	unknown	gnl|CDD|274799
NZ_CP040505.1|WP_005962536.1|41315_42611_+|TadA-family-conjugal-transfer-associated-ATPase	unknown	unknown	gnl|CDD|200328
NZ_CP040505.1|WP_040313573.1|44345_44615_+|DUF4244-domain-containing-protein	unknown	unknown	gnl|CDD|379429
NZ_CP040505.1|WP_005962518.1|59352_60498_-|acyl-CoA/acyl-ACP-dehydrogenase	unknown	unknown	gnl|CDD|224871
NZ_CP040505.1|WP_131247287.1|48062_49031_-|DUF1998-domain-containing-protein	unknown	unknown	gnl|CDD|274800
NZ_CP040505.1|WP_005962537.1|40302_41199_+|hypothetical-protein	unknown	unknown	gnl|CDD|274798
NZ_CP040505.1|WP_131247203.1|42607_43975_+|hypothetical-protein	unknown	unknown	gnl|CDD|227300
NZ_CP040505.1|WP_005962539.1|37896_38835_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_131247285.1|60713_61295_+|LytR-C-terminal-domain-containing-protein	unknown	unknown	gnl|CDD|379163

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005962523.1|55905_56682_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	gnl|CDD|274164	TIGR02495, RADICAL-ACTIVATING_ENZYME, anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG, which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism, Protein fate, Protein modification and repair].	6.32176e-73
NZ_CP040505.1|WP_131247285.1|60713_61295_+|LytR-C-terminal-domain-containing-protein	gnl|CDD|379163	pfam13399, LytR_C, LytR cell envelope-related transcriptional attenuator. This family appears at the C-terminus of members of the LytR_cpsA_psr, pfam03816, family.	2.8404e-12
NZ_CP040505.1|WP_005962524.1|54001_55882_+|ribonucleoside-triphosphate-reductase	gnl|CDD|236212	PRK08270, PRK08270, ribonucleoside triphosphate reductase.	0
NZ_CP040505.1|WP_131247203.1|42607_43975_+|hypothetical-protein	gnl|CDD|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	7.89145e-06
NZ_CP040505.1|WP_005962538.1|39096_39915_-|HAD-family-hydrolase	gnl|CDD|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	4.47966e-42
NZ_CP040505.1|WP_131247201.1|51732_52260_-|histidine-kinase	gnl|CDD|341122	cd17511, YbjN_AmyR-like, YbjN protein family is structurally similar to type III secretion system chaperones. This YbjN protein family includes Escherichia coli YbjN, Erwinia amylovora AmyR, and similar proteins. YbjN proteins share a class I type III secretion chaperone (T3SC)-like fold with type III secretion system (T3SS) chaperone proteins but appear to function independently of the T3SS. YbjN is an enterobacteria-specific protein. In E. coli, it acts as a sensory transduction regulator that may play important roles in regulating bacterial multicellular behavior, metabolism, and survival under stress conditions. E. amylovora AmyR, a functionally conserved ortholog of E. coli YbjN, is a stress and virulence associated protein that regulates the ams operon. Ams proteins are required for amylovoran biosynthesis. AmyR may also regulate the Rcs phosphorelay system, an atypical two-component signal transduction (TCST) system present only in Enterobacteriaceae and positively regulates amylovoran biosynthesis by activating the ams operon transcription.	0.00194855
NZ_CP040505.1|WP_005962530.1|45886_46378_-|DNA-starvation/stationary-phase-protection-protein	gnl|CDD|153102	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) display an N-terminal extension of variable length that contains two or three positively charged lysine residues that extends into the solvent and is thought to play an important role in the stabilization of the complex with DNA. DPS Listeria Flp, Bacillus anthracis Dlp-1 and Dlp-2, and Helicobacter pylori HP-NAP which lack the N-terminal extension, do not bind DNA. DPS proteins from Helicobacter pylori, Treponema pallidum, and Borrelia burgdorferi are highly immunogenic.	1.04664e-44
NZ_CP040505.1|WP_005962527.1|51253_51736_-|hypothetical-protein	gnl|CDD|341122	cd17511, YbjN_AmyR-like, YbjN protein family is structurally similar to type III secretion system chaperones. This YbjN protein family includes Escherichia coli YbjN, Erwinia amylovora AmyR, and similar proteins. YbjN proteins share a class I type III secretion chaperone (T3SC)-like fold with type III secretion system (T3SS) chaperone proteins but appear to function independently of the T3SS. YbjN is an enterobacteria-specific protein. In E. coli, it acts as a sensory transduction regulator that may play important roles in regulating bacterial multicellular behavior, metabolism, and survival under stress conditions. E. amylovora AmyR, a functionally conserved ortholog of E. coli YbjN, is a stress and virulence associated protein that regulates the ams operon. Ams proteins are required for amylovoran biosynthesis. AmyR may also regulate the Rcs phosphorelay system, an atypical two-component signal transduction (TCST) system present only in Enterobacteriaceae and positively regulates amylovoran biosynthesis by activating the ams operon transcription.	2.77014e-07
NZ_CP040505.1|WP_131247199.1|52343_53522_+|phosphatase-PAP2-family-protein	gnl|CDD|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	8.47334e-13
NZ_CP040505.1|WP_051057843.1|44943_45342_+|flp-pilus-assembly-TadE/G-like-family-protein	gnl|CDD|274799	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein. Members of this small, highly hydrophobic protein family occur in a pilus/secretion-like region that usually is next to an uncharacterized DEAH-box helicase, in Actinobacteria. Members show sequence similarity to the TadE-like family described by pfam07811. The function is unknown. [Unknown function, General].	1.1698e-11
NZ_CP040505.1|WP_005962536.1|41315_42611_+|TadA-family-conjugal-transfer-associated-ATPase	gnl|CDD|200328	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.	3.87294e-124
NZ_CP040505.1|WP_040313573.1|44345_44615_+|DUF4244-domain-containing-protein	gnl|CDD|379429	pfam14029, DUF4244, Protein of unknown function (DUF4244). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 66 and 95 amino acids in length. There is a conserved EYA sequence motif.	3.8604e-14
NZ_CP040505.1|WP_005962518.1|59352_60498_-|acyl-CoA/acyl-ACP-dehydrogenase	gnl|CDD|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	7.88081e-52
NZ_CP040505.1|WP_131247287.1|48062_49031_-|DUF1998-domain-containing-protein	gnl|CDD|274800	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.	1.64324e-67
NZ_CP040505.1|WP_005962537.1|40302_41199_+|hypothetical-protein	gnl|CDD|274798	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see ). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.	0.000826857

Protein sequences

>NZ_CP040505.1|WP_005962530.1|45886_46378_-|DNA-starvation/stationary-phase-protection-protein
MSDTPVKNPSVIPVFSATPELSDALERVLVDVTALSLVSKQIHWNVVGPNFRDIHLNLDEVVTIAREASDEIAERMRAINAIPDGRPEAIAERTSVPSAPEGVLMVSDAVDYMVNALNAVVSTLREVHKVVDETDSMSSGIVEDYVLRLEQQAWFLSSQNYSA
>NZ_CP040505.1|WP_051057843.1|44943_45342_+|flp-pilus-assembly-TadE/G-like-family-protein
MRGPCEAREFGPVRSLKEEGSGTILTAGVCAVVVLFALVIGAYGVEASTRARLDAIADLAALAGADVSATAQWEDVGSRPCEEAGAVVARNGVALDSCEILGTHTRVIVSSSVKLMGVSVPVRARARAGPKE
>NZ_CP040505.1|WP_005962533.1|44611_44983_+|hypothetical-protein
MKRRGRVGGEEEGSTSVELAIGFVTIAAMLVLVLAVSSFGIARQGLCRGAGEAARAAVSGAADAEAVGRQALGSLAARGAQVSVTRSGQWALASASMPGSSIASMPLPPLTCEVHAKLGSLVP
>NZ_CP040505.1|WP_040313573.1|44345_44615_+|DUF4244-domain-containing-protein
MSHLISIAGIEEAITRAQRQGAHTRARIEEKLAFTSEAGQRDYEEGSTTVEYAIGAVAAAGFAGLLLVVLKSGAVKALLQGIITSALTL
>NZ_CP040505.1|WP_131247203.1|42607_43975_+|hypothetical-protein
MSIVLALAALVAAAASVVTKRSWRQWVVCAWGESGEEARRVAGCSAHMGGAGRRCLGGACSVGGYGSGIWGGDCSERGILGRDCSERGRGPRVKASGSGAARAKILRSRKPSGPADYRIAGAELALLVTEVASRLRAGAPVEHAWEASWTRLIPGVPFSGIDEDGSPRVLSELTKVPALAQIRTFSDIRRIYWLKRGRGRAAHSATLALRSACRLSASSGAPLAQILDAVADGLEESEAAEEARRIASSSARTSSRILIALPLLGIIGAQVMGADPIGTFSDAGIGSVLGLIGLTLLLASIFVSRTLIARAAGSAGELDPAIACDLAQAVLEAGGSIPQVLEAIGESAEDPTLRAAGRGLRIGLKWSRAWEERPDDPLALALEPAWTDGAMPDELLRRSARAIRVGRIADARAKAEALGVELALPLGALLLPAFLALGLGPVMLHLFEGGFASLV
>NZ_CP040505.1|WP_005962536.1|41315_42611_+|TadA-family-conjugal-transfer-associated-ATPase
MGARRGAQGGARNGTRVERAPAAHSADPRGEAVEQKVFEQEVFEQDALARIASGQGIGLAVRQAARPGAGIREMSELLEKVTSIAAGTGPELARVLVDPLTSDVLVNSTQAWVDRGRGLEPLDLPLDSDEQTRALAVRMAAACGRRLDDASPIVDGSLPGGIRLHAVLPAPSASGTLLSLRTARAAGMGVDDMIETGSITPEIGRILRNLVEQRANVLVSGATGSGKTTLLAALLGLVPADERIICIEEVPELSPDHPHVISLVERKANVQGQGGIPLSELVRAAMRMRPDRLVLGECRGPEVRDVLLALNTGHDGGWATIHANGANDVPARLHALGALAGMSDAAVAAQAVAALDAVVHMQRAPVRSGMDEGPGRWVSEIALLRRQGSELLCDLAIKATRFGKCEHGPGWEDLEKRLAGSASGREPAGSA
>NZ_CP040505.1|WP_005962537.1|40302_41199_+|hypothetical-protein
MEIGVGGQFHLPEDLPLLAEVIVNAVGAASANHAQAPVRALSESGPQVIALAEWTPASGAAVLAGLLAKTEDSVLIDASGTAPSPFLMQSPDLPGIRWADLDRAERAFGPDLVERLPRTQGIRILAGDARGVADGADPRLSAVIEASAGRCVLDLGRWDSRAEFALMAGIDYLVLLGSGDLAGASRLACVLALYPPLVPTVLVTRGRVGPHIAQLTDAPTMHLSAAMRRGGRPLLKELRRTSGRQWAGRWAVEAKHCAPEAKRGAVEAKRGAVEAKRGVVEAKHCAPEAKQWAPEGTA
>NZ_CP040505.1|WP_005962538.1|39096_39915_-|HAD-family-hydrolase
MPDLLSPLSTAPHKSAAFFDLDKTILATASSMALRGPFVDAGLVTRRAAIMSVLVHLPYILRGADENRMNEMAKTLGDLAKGIDARRLEATVEESLDSVIDPVCYLEALEEITRHQAEGRPVIVASASALEVVRPIAKRLGADGILATIVAKDEEGAFAGEILHFNQAEGKARACAELAAERGWNLAECWAYSDSISDEPLLASVGHPVAVNPDRALRKIAEEREWRIERFEKKARVGRALPRPPRKAVFGLGCALLAVSVAVSVSLRRTSV
>NZ_CP040505.1|WP_005962539.1|37896_38835_+|hypothetical-protein
MTIDALIDPSVHVLARASARPEVQAAMNSAIDALTRLRFHEGLRRGWEEARAEATIHEATALSLILGARTSVNDLRLASLAGVGERPAGVGERPAGADSFPAGAGSPHADTASCPSEAGAPIRRDPAMDLAIGIQRSQTGLVAGFPPLNSRVPSRPRQIPLPALVASIHRDICSGLVESGRMSTRGVAMPNSPELLAPLAGYMSANAPALARAAAILAHFRFREVFTPASPAVGAALARRLLVLEGVDPTGVCTISVLDAHDPVQASRELAGWVSADEDGVARWILHFTKSVEHGAKAGENIALHVQAGRLG
>NZ_CP040505.1|WP_005962540.1|36855_37824_-|hypothetical-protein
MSLRSVIRTPHAKSLLFALVFAPVALILLGSSMADVQAKTAIGQPLASVEGLIGMGIGAVLLTLVSLNCEESPAGMFLTSGLSVIVGAGQFVGFLRIPMLQSSFVDSLDMQAAVSWSLYPLGVTAITLGAALALMLTFRRAAHPQRPGTSQGRRIFHHRHAWVAGFAIPSALGASMLFIVIAPSDTTEVAAHGLGALGPFTPGAAIIAFTAALLLGVVAFMACLSLTGPQLTAWLFMVLPSYMLWPLWTSITGSVVRPGASILTSLSMAAPVVATLGLVLGSSTIGIYWARSFALSNGVVEGEAGAGNGDVHDAPDPRQAEE
>NZ_CP040505.1|WP_131247287.1|48062_49031_-|DUF1998-domain-containing-protein
MMAPLSHEAGAGVGASVGAGAGVGTWAGVESEAEVGVGAGTSARAEPNAGAGVGTWVGAVDEVDIESRVRVGSRADLWGESGARAKAWGAPSLIPASSRGAQHQRIAVVEEVRTPLRTRAKQHVSVSVRQVERSWTSEDGLVTWRFGAVDVTSRVTDYDLLRLPGLEFIRNCELRLPTRVLETKAVWYELSAHALAVLGLGRDELPGTLHAAEHAAIGILPLFAACDRWDLGGLSTAEHEDTGLPSVFVHDAFRGGAGHAETGFERAGSWMRATLGTLLGCECEEGCPRCVQSPKCGNGNEPLSKAGAVLLLNFLVDHCPPG
>NZ_CP040505.1|WP_005962527.1|51253_51736_-|hypothetical-protein
MSVPFAVPNDECTPYPLTFERLLSHVHEMGYELDVIAEGRAAGAVFDSVPFLISIDQSGRFLSIRAMWETGLDVPRSTRPLFAAADSWNREKYFPTVYSMPSEQGTSIVFADFVLDTAAGVSKDQLTQNVSAGVSTGISAIEYMKQAAEQTLGWTDPRAK
>NZ_CP040505.1|WP_131247201.1|51732_52260_-|histidine-kinase
MSATPVSTERVRDLLSSRDLNFGEYSEAELVVPTRNAVYFWNTSNPQILQVRAQWRGIAEDDTQFSALVDEIASCNSTRSGPKAYLAPLEDSSRYGLIAECNVVAMDGLTQAQLDGFYETSLSMIMGFFADLEKTLPDFVTWADDAENTNDAGDATEQAKPRLAASVTTVEEDQE
>NZ_CP040505.1|WP_131247199.1|52343_53522_+|phosphatase-PAP2-family-protein
MHFSPVGGGVVFLREHPSAGMLLKMPLSGGDCVDGAPQRGDAPVSAAATGRYAPIQWGLKHLRIARGEPMSVGMPPSRRPKGLPANQRADAKKPLPSSSRPGVSSDRWYARKLRRRIFAALVCAFLSVIVTRVALSTARGQGVDTIFMEAAAKSARRFDPLVQLVTSLVSVPAIVFVGTLVFLVALARRRPTLAGRAIVMVLGANATTQIAKALLDRPDLGLSTALPNSLPSGHTTVAMSITLALVMVAPQWLRAPSAWAGWIWASLMGISVMISAWHRLADVLVAFFICGAWALALAPIEGRERHAPAMQRAMSIGVLAFLIVAVLLTIFALAGISLKEISSPGAYSFGYDAYLESAPWRSRVLALAASTWVLSVAGWVINEVDVLCSRRD
>NZ_CP040505.1|WP_005962524.1|54001_55882_+|ribonucleoside-triphosphate-reductase
MDQPTPDNAARYDVDAIATVEEYLDRSDWRVNANANQGYSLGGLILNTAGKVVANYWLERVYTPQIGEAHRRGDYHIHDLDMFAGYCAGWSLKRLIQEGFNGVPGAIASAPPAHFSSACGQIVNFLGTLQNEWAGAQAFSSFDTYMAPFVRLDNMSYKQIVQNMQELIYNLNVPSRWGSQCPFTNLTFDWTCPDDLRDEYPLIADEVCDFTYGELQHEMDLINKAFIEVMTHGDADGRVFTFPIPTYNITPDFNWDSENTDLLFDMTAKYGLPYFQNFINSDLDPHMIRSMCCRLQLDLRELLKRGNGLFGSAELTGSIGVVTMNMARLGYRFAGDEDALVTELDRLIDLASDSLERKRETIQFHMDHGLFPYSKRYLGHLDNHFSTIGVNGMNEMVRNFTHDEYDLTDPRGFDMCVRILDHVRERMVELQEKTGHLYNLEATPAEGTTYRFAKEDRKRYPGILQAGTEEQPYYTNSSQLPVGYTDDPFQALEDQEVLQGKYTGGTVLHLYMGERMSSGAACKEMVKRSLTAFKLPYITITPTFSICPVHGYLAGEHFECPKCQEAHPEREPQACEVWTRVMGYFRPVQSFNIGKKGEYAERQMFSEEAAGQHGELVSAFPPVDQR
>NZ_CP040505.1|WP_005962523.1|55905_56682_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein
MSESSEAGARAEQAGAPLRIGGFTPDDLQIAGLVPLSTVDWPGRFVASVFCQGCPWRCPYCQNSAILDPKIPGVVAWSAVEDLLSRRHGLLDGVVFSGGEATRQLALLPAMRRVKELGFHVGLHTAGAYPKRLETILEEGLVDWVGIDVKAMPENYEQVSGRAGAAEKAWASLDLVLAHPEVAHEVRLTVYPGGPFDGLEVARELKERGVRAFALQQARAFGAPEGFEAKGAGWDDQVAALARDCTALGFDSFEFRPD
>NZ_CP040505.1|WP_131247197.1|57500_57767_-|hypothetical-protein
MSRPRIGNAALLGSVVRLGPLRSDGREDGPPVHGHVLVLGKILNGNDGRCLSIDGHGGRPEGFTRVCSTAFTDQRNDLRVPYVLQPVE
>NZ_CP040505.1|WP_005962519.1|58520_59105_+|hypothetical-protein
MWILIGLVVALLAILGFIFFDFSSGEGDSTSPNSTDSQTNQTQPTAPEAENKPQQPDTAQSTIVFPAPATAKTMPGFSSPSGNIVCFLSDDQATCKIAQNSWEGTAYQTCRGDEGVGVLSLKGNRAEASCVALDLAQAPVLAYGEYAKNGQIACTSTMDGISCWNQVNGKSFALARGGWMTSSQGEITPDAFTW
>NZ_CP040505.1|WP_005962518.1|59352_60498_-|acyl-CoA/acyl-ACP-dehydrogenase
MGFLSNDLLTRIHERAGAHDLANEFPVDDLKDLREAGYLSAFVPEEYGGAGLSLEEIAAEQTRLAKAAPGTALGINMHQIIVGLGRHLLRNGNPRGEIILRDAVAGELYGFGISEPGNDLVLFGSITEALPDSEGGYSFEGVKVFTSLAPVWTRLMTFGRDDSGEDGPRSVFAILKREDGGFSIKDDWNTLGMRATQSNTTILEGAYAPEDHILTRCEPGPSKDPVVFGIFSHFEILLAATYMGIGERAIEVAAEHVKTRRSVKNQSVYANDPDIRWRIAEAAITMNAVGPQIRELARDIEGGVDRGPIWMPQLSAVKNAAAEASLRAVEQSIRACGGGAYYNGHELSRLYRDVLAGLFQPSDQESLHGAWAKVVLGPVTE
>NZ_CP040505.1|WP_131247285.1|60713_61295_+|LytR-C-terminal-domain-containing-protein
MLALALISLLVLTGLIPVPFANDFSKGTKYATPGTIPCPAEGATPVDPSTIQVRVLNTTSRQGLASEATTLLVNAGYEPLEPSNASPEYAGVVQIDVGPAAVDEAYTVARFFPKSKVVLSESTDKTVTVLLGTFYDSSSVSDEVGRIAESKDPLKGPSGCLPLSEESLKKAEQAAAQSGSVEGQSDADSQSEN

Crispr_ID: NZ_CP040505_3

• CRISPR_ID: NZ_CP040505_3
• CRISPR_location: 68259-68347
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP040505_3

Consensus_repeat	Method
AATGGCTCCGTTTGCGCGAAGCGGGCCC	CRISPRCasFinder

spacers of NZ_CP040505_3

>3.1|68287|33|NZ_CP040505|CRISPRCasFinder
ATCGTCGAAGACATCTGATCCGTCGAGCATGAA

CRISPR arrays and Neighbor proteins around NZ_CP040505_3

CRISPR arrays

The CRISPR arrays of NZ_CP040505_3

>merge|NZ_CP040505|3|68259-68347|CRISPRCasFinder
AATGGCTCCGTTTGCGCGAAGCGGGCCCATCGTCGAAGACATCTGATCCGTCGAGCATGAAAATGGCTCCGTTTTCGCGAAGCGGGCCC

>NZ_CP040505|3|3|68259-68347|CRISPRCasFinder
AATGGCTCCGTTTGCGCGAAGCGGGCCC	ATCGTCGAAGACATCTGATCCGTCGAGCATGAA
AATGGCTCCGTTTTCGCGAAGCGGGCCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005962513.1|65755_66154_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_131247197.1|57500_57767_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962507.1|72985_73582_-|recombination-protein-RecR	unknown	unknown	gnl|CDD|234616
NZ_CP040505.1|WP_083879454.1|84168_85578_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|226361
NZ_CP040505.1|WP_005962509.1|68758_70099_+|N-acylglucosamine-2-epimerase-superfamily-protein	unknown	unknown	gnl|CDD|369267
NZ_CP040505.1|WP_040313833.1|81240_82557_+|aspartate-kinase	unknown	unknown	gnl|CDD|235843
NZ_CP040505.1|WP_005962505.1|77567_78368_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224026
NZ_CP040505.1|WP_005962504.1|78367_79315_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|226605
NZ_CP040505.1|WP_005962519.1|58520_59105_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962499.1|85453_87448_-|extracellular-solute-binding-protein	unknown	unknown	gnl|CDD|270262
NZ_CP040505.1|WP_131247285.1|60713_61295_+|LytR-C-terminal-domain-containing-protein	unknown	unknown	gnl|CDD|379163
NZ_CP040505.1|WP_131247193.1|65509_65749_-|DUF4258-domain-containing-protein	unknown	unknown	gnl|CDD|379454
NZ_CP040505.1|WP_005962512.1|66517_68188_-|alpha-D-glucose-phosphate-specific-phosphoglucomutase	unknown	unknown	gnl|CDD|236050
NZ_CP040505.1|WP_005962518.1|59352_60498_-|acyl-CoA/acyl-ACP-dehydrogenase	unknown	unknown	gnl|CDD|224871
NZ_CP040505.1|WP_005962501.1|82754_83804_+|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl|CDD|237845
NZ_CP040505.1|WP_131247423.1|70921_72088_-|IS1249-family-transposase	unknown	unknown	gnl|CDD|307151
NZ_CP040505.1|WP_131247195.1|65126_65483_-|DUF2283-domain-containing-protein	unknown	unknown	gnl|CDD|378367
NZ_CP040505.1|WP_131247283.1|62107_63112_-|App1-family-protein	unknown	unknown	gnl|CDD|378322
NZ_CP040505.1|WP_005962515.1|63571_64789_-|MFS-transporter	unknown	unknown	gnl|CDD|340863
NZ_CP040505.1|WP_005962503.1|79885_80881_-|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|380548

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005962501.1|82754_83804_+|aspartate-semialdehyde-dehydrogenase	gnl|CDD|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	0
NZ_CP040505.1|WP_005962507.1|72985_73582_-|recombination-protein-RecR	gnl|CDD|234616	PRK00076, recR, recombination protein RecR; Reviewed.	3.07706e-114
NZ_CP040505.1|WP_083879454.1|84168_85578_-|ABC-transporter-ATP-binding-protein	gnl|CDD|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	4.05299e-87
NZ_CP040505.1|WP_005962509.1|68758_70099_+|N-acylglucosamine-2-epimerase-superfamily-protein	gnl|CDD|369267	pfam07221, GlcNAc_2-epim, N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase). This family contains a number of eukaryotic and bacterial N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) enzymes (EC:5.3.1.8) approximately 500 residues long. This converts N-acyl-D-glucosamine to N-acyl-D-mannosamine.	1.62124e-40
NZ_CP040505.1|WP_040313833.1|81240_82557_+|aspartate-kinase	gnl|CDD|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0
NZ_CP040505.1|WP_131247283.1|62107_63112_-|App1-family-protein	gnl|CDD|378322	pfam09949, DUF2183, Uncharacterized conserved protein (DUF2183). This domain, found in various hypothetical bacterial proteins, has no known function.	6.5919e-44
NZ_CP040505.1|WP_005962504.1|78367_79315_-|ABC-transporter-permease	gnl|CDD|226605	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only].	5.75407e-104
NZ_CP040505.1|WP_005962499.1|85453_87448_-|extracellular-solute-binding-protein	gnl|CDD|270262	cd13544, PBP2_Fbp_like_1, Substrate binding domain of a putative ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The substrate domain of this group shows a high homology to the periplasmic component of ferric iron transporter (Fbp), but its biochemical characterization has not been performed. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	7.48006e-22
NZ_CP040505.1|WP_131247285.1|60713_61295_+|LytR-C-terminal-domain-containing-protein	gnl|CDD|379163	pfam13399, LytR_C, LytR cell envelope-related transcriptional attenuator. This family appears at the C-terminus of members of the LytR_cpsA_psr, pfam03816, family.	2.8404e-12
NZ_CP040505.1|WP_131247193.1|65509_65749_-|DUF4258-domain-containing-protein	gnl|CDD|379454	pfam14076, DUF4258, Domain of unknown function (DUF4258). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 95 and 124 amino acids in length.	2.4055e-05
NZ_CP040505.1|WP_005962512.1|66517_68188_-|alpha-D-glucose-phosphate-specific-phosphoglucomutase	gnl|CDD|236050	PRK07564, PRK07564, phosphoglucomutase; Validated.	0
NZ_CP040505.1|WP_005962518.1|59352_60498_-|acyl-CoA/acyl-ACP-dehydrogenase	gnl|CDD|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	7.88081e-52
NZ_CP040505.1|WP_131247423.1|70921_72088_-|IS1249-family-transposase	gnl|CDD|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.88455e-06
NZ_CP040505.1|WP_131247195.1|65126_65483_-|DUF2283-domain-containing-protein	gnl|CDD|378367	pfam10049, DUF2283, Protein of unknown function (DUF2283). Members of this family of hypothetical bacterial proteins have no known function.	6.1879e-08
NZ_CP040505.1|WP_005962505.1|77567_78368_-|ABC-transporter-ATP-binding-protein	gnl|CDD|224026	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only].	1.89331e-119
NZ_CP040505.1|WP_005962515.1|63571_64789_-|MFS-transporter	gnl|CDD|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.43567e-17
NZ_CP040505.1|WP_005962503.1|79885_80881_-|ABC-transporter-substrate-binding-protein	gnl|CDD|380548	cd06325, PBP1_ABC_unchar_transporter, type 1 periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.	8.17527e-109

Protein sequences

>NZ_CP040505.1|WP_005962512.1|66517_68188_-|alpha-D-glucose-phosphate-specific-phosphoglucomutase
MHERAGTLALPEDLINVEEVLSAYYDIEPDPSIIDQRVSFGTSGHRGSSLDGKFNEAHIVAITAAIVEYRASQGIDGPLFIGRDTHALSEPAWRTALEVLAAAGVSVKIDSHSSYTPTPAVSVAILGANGAPQALRTSGPGLADGIVVTPSHNPPRDGGFKYNPPHGGPADTDATGWIANRANEILEEGWRKIPRIIGAPLFEDEHLEKFDYLTYYVDQLDQVIDIDAIREAGVRIGADPLGGASVDYWAAIAERYGLELTVVNPVVDPAWPFMTLDWDGKIRMDCSSPNAMASLRRAMTPDENGNTPYDIATGNDADSDRHGIVTPDGLMNPNHYLAVAIDYLFQHRPGWKDDAAVGKTLVSSALIDRVVASMGRKLIEVPVGFKYFVPGLLDGSVGFGGEESAGASFLRKDGTVWSTDKDGIILALLASEILAVTGKTPSQLHAELVERFGASAYARIDAPANREQKAKLAALSPEDVTATELAGEPITARLVRAPGNDAAIGGLKVTTENAWFAARPSGTEDVYKIYAESFKGAEHLAEVQEEAKKVVSDALG
>NZ_CP040505.1|WP_005962513.1|65755_66154_-|hypothetical-protein
MIELDYAFLADYAAIQESKLTAVGASFTRMVVREIPSQIMLSVAGRVRVSTDIDELNLAIRATVPQQSYQLDGTLRISDLKNLPEYGEGKRGAMFALQFSLPLMELGTYVIEVDILETEGVDRVLKFEAVSL
>NZ_CP040505.1|WP_131247193.1|65509_65749_-|DUF4258-domain-containing-protein
MPRIKRISYHGRRRAAERQISEQELLEVLNDYSLSRPAANGDRMLFEGYVHADGSRVCVVVSWPPDETDGVVVVTCWRK
>NZ_CP040505.1|WP_131247195.1|65126_65483_-|DUF2283-domain-containing-protein
MNAQTIKVELDWTARACYIRLSDATVARTEPFDDDMCLFVDLDDMDEVVGIEILDLDRDIPLSDLCRQFHIREKRAAMIAHLLPSVTKTPLFTVVADPVIGHGQTITMQKNTSRLAQH
>NZ_CP040505.1|WP_005962515.1|63571_64789_-|MFS-transporter
MLGPYLDVLKLDGSWKFSLAGLILRLPMSMTSISIVLLIKASYGNYSLAGLMAALNVIATALCAPIIARYVDRLGQRKVMGPLLTIEVAANVAFLLAAIMHASPVLVALITVIAGATWGAPGAFVRARWTNALKDQPKGLTTAFALESAIDEFVYILGPVLSTVLGTLFHPGVGLVLICLFLGIGGFWFFSQSASEPAPRPKAEGERRQSVLRNPAVVVMVLTYIAMGSMFGANDVAVVAFAAALGVPSMSGVLLAFFSIGSLLAGLWYGSRRWTQPLWSLFAFGVVLLAIGTSTYLLAHSIPVMALVMTLTGITCAPTMTNVNTVIARIVAPERLTEGLTWVGTSLNIGLSLGSAMAGPVIDAGGARSGYFVMVGAAWVMVAIMVLGLPSLRRATTSLHPRIEE
>NZ_CP040505.1|WP_131247283.1|62107_63112_-|App1-family-protein
MQVLHEGDVRAAGLHEGDALYSAPTKKGLVKERPLEEPLPGDKVSNGVFALEPCLGGPLPGEIWPDKACTPGPRADKPCPHEPCDYQSPATHRVGRVRAGTPVSVALRIVGDEERIGVVSDIDDTVMVTMLPRPLVAAKHSFVDRVSAREAVPGMANFLRCLARRGARGRAVATEHAPAFGAPVIYLSTGAWNVVPTLRDFLQRLGYPRGGFLMTDFGPSNTGWFRSGPEHKRRELRRLARMFPTMKWFLVGDDGQHDPEIYAEFAREFPLNVAGIAIRSLSEIEQFLSHGTFEALVPDALWTVPRRIPVWFGSDGDALVKEIHEGGISRNERP
>NZ_CP040505.1|WP_131247285.1|60713_61295_+|LytR-C-terminal-domain-containing-protein
MLALALISLLVLTGLIPVPFANDFSKGTKYATPGTIPCPAEGATPVDPSTIQVRVLNTTSRQGLASEATTLLVNAGYEPLEPSNASPEYAGVVQIDVGPAAVDEAYTVARFFPKSKVVLSESTDKTVTVLLGTFYDSSSVSDEVGRIAESKDPLKGPSGCLPLSEESLKKAEQAAAQSGSVEGQSDADSQSEN
>NZ_CP040505.1|WP_005962518.1|59352_60498_-|acyl-CoA/acyl-ACP-dehydrogenase
MGFLSNDLLTRIHERAGAHDLANEFPVDDLKDLREAGYLSAFVPEEYGGAGLSLEEIAAEQTRLAKAAPGTALGINMHQIIVGLGRHLLRNGNPRGEIILRDAVAGELYGFGISEPGNDLVLFGSITEALPDSEGGYSFEGVKVFTSLAPVWTRLMTFGRDDSGEDGPRSVFAILKREDGGFSIKDDWNTLGMRATQSNTTILEGAYAPEDHILTRCEPGPSKDPVVFGIFSHFEILLAATYMGIGERAIEVAAEHVKTRRSVKNQSVYANDPDIRWRIAEAAITMNAVGPQIRELARDIEGGVDRGPIWMPQLSAVKNAAAEASLRAVEQSIRACGGGAYYNGHELSRLYRDVLAGLFQPSDQESLHGAWAKVVLGPVTE
>NZ_CP040505.1|WP_005962519.1|58520_59105_+|hypothetical-protein
MWILIGLVVALLAILGFIFFDFSSGEGDSTSPNSTDSQTNQTQPTAPEAENKPQQPDTAQSTIVFPAPATAKTMPGFSSPSGNIVCFLSDDQATCKIAQNSWEGTAYQTCRGDEGVGVLSLKGNRAEASCVALDLAQAPVLAYGEYAKNGQIACTSTMDGISCWNQVNGKSFALARGGWMTSSQGEITPDAFTW
>NZ_CP040505.1|WP_131247197.1|57500_57767_-|hypothetical-protein
MSRPRIGNAALLGSVVRLGPLRSDGREDGPPVHGHVLVLGKILNGNDGRCLSIDGHGGRPEGFTRVCSTAFTDQRNDLRVPYVLQPVE
>NZ_CP040505.1|WP_005962509.1|68758_70099_+|N-acylglucosamine-2-epimerase-superfamily-protein
MGWFDSVEHNRWLSTQMQALIAEAEGAIVPTGFAHLTEEGEPDPERGIDLAVTGRMLYVFSLGVLMGLPGTRRYADHALKSIGTYFKDPVNGGLWISIKPEPDEDGHGIPWDEEGRSKSQYHNAYVILGLAAATVANRQGAYELLNDALHDQERHWIEPNGLVRDQYDEAFTQALPLRTLGTLLHTAEAYLAAAEATTDPVWIDRAEQMAAFANKIASEKSSRLPEYYDDEWKPLGEEPAGYVDGRRIYHGYVTGHAMQWSRIMLQLRAALRSLGRPQPDYLMECAVDLFERARVDGWRRNNGEPGFSTSVDCEGSPVTGEDEHQQWVVCEGICATVAIRRAMLDDGATPGEIEHFEHCYRSFLDYVNDYLILKPGRWLRSLDANNKRYATLKCSPWDVYHSIQTTLAVRVPLWPPYASALSRDLLDKPKEAPSDKKSWNSFFRRH
>NZ_CP040505.1|WP_131247423.1|70921_72088_-|IS1249-family-transposase
MSVDKRPKCPICRAPMNANGKTSSRTPRWRCRNCSFSTVLKRPDVTRRHDLEAFINYATGKTSQAERDGTLTGRSFRQRTSWCWQVPPPLPVMDGVIHDQVFIDGIFLSHSWVILIATDGRTPLNWVTAGRENATAYTQLLSPLPPPGIITTDGAGGALAAIRTLWGPDQPVQRCLVHVHRNNTVDLTHNPHTPAGKALKGLSHSLLRVTTMDEAAHWASLLAAFHTEYAHYLKERTYASQDPEKAAATGKKWWYTHERDRRVYYRLERLLKNKQLFTFLTDPGRPNLASTTNPIESLNAQIRALLRAHAGWNTTRQITAIHWFLAHHQHPINAATVLAEWDKHARQPHTIIPTTHKQQPRPDGPTHYDNAYSPDTGFHTRKGWAGRT
>NZ_CP040505.1|WP_005962507.1|72985_73582_-|recombination-protein-RecR
MYEGALQDLIDEFGRLPGIGPKSAQRMAMHVLDSEPDEVARLVDAIQAVRKRVHHCEICGNLTEEEACSICRDPRRDPTTLCVVQEPKDIQAIEGSRVFHGRYHVLGGVIDPIHGIGPDQLRIRQLLTRLQDDRITEVIIATNPNVEGEATAAYLARTLATIGITTSRLAMGLPMGGDLEYADSITLGRALEGRRSMA
>NZ_CP040505.1|WP_005962505.1|77567_78368_-|ABC-transporter-ATP-binding-protein
MLDIEAVTKTFFRRTVNERVALSDISLHLDPGDFVTIIGSNGAGKSTLLNIVSGRYQADVGRVKIEGEDVTKLPDYKVAKYVSRVFQDPMAGTAPHLSIEENLALAWSRGRGRTLGPALTQKKRQMFRDVLAPLEQGLENRLHAKVGLLSGGQRQALSLTMATFSKPKVLLLDEHTAALDPKRAALITQITREAVERQHLTTLMVTHNMEQALSMGNRLIMMHEGRIIFELAGEEKKRATVTSLLAEFDKLRGKEEQGLSDRMLLA
>NZ_CP040505.1|WP_005962504.1|78367_79315_-|ABC-transporter-permease
MLTALDLGLIYGLMALGVYLTFRVLDIADLTVDSSFTTGAAVAAVMITAGQNPWLATLGGFLAGCVAGTVTGLLHVNAGIHPLLAGILTQIGLYSINLRILGKANVPLLRGVETLLTPLRDKGLLGSWISILIFAALIAIVTTLFNWFLSTQIGLGMRSTGDNEGMARAQGVSTGTMKIIGLALSNGLVASSGAIIAQYQGYADISMGIGLIVAGLASVIIGTALIGSQGVWVTSLFVVIGSIVYRVIIQLALGVEFLEANDMKLISAIIVFAALMIPRIGIFSKIRERRRNRSLVPEPDITHTPEERDNEKVVF
>NZ_CP040505.1|WP_005962503.1|79885_80881_-|ABC-transporter-substrate-binding-protein
MKRTSLIAATAAAAVLALAGCSGSATSTDASTPASPAGEAYSIGITQITTHTALDSAREGFKKAFEDAGIQVKYDEQNAQGDQATATSIASKFASSDLDLVLAIATPSAQAAAQSITKVPVLFTAVTDPVSAQLVNSLEAPGSNITGTTDMNPVADQISLVKEFAPKAKTLGIIYSSGEVNSEVQVELAKEAAAKDGLQVVESAVTNSAEVQQAAQDLASKVDAIYVPTDNTVVSALASVVQAAEDAKIPLIAGEANSVAQGALATYGIDYSKLGYQTGEMAIRILKEGAEPASLPVEAQKDYELTVNTTTLKALGLELPASLKDRAVTIE
>NZ_CP040505.1|WP_040313833.1|81240_82557_+|aspartate-kinase
MALIVQKYGGSSVADVEAMKRVARRVVETHDAGHQVVVVVSAMGDTTDDLLDTAAQITSKAPEREMDILLSAGERISMALLSMAVNELGVDAQAYTGAQAGIKTNSNYGRAQIIGMVPERIARTIREGQVAIVAGFQGISEGEDVTTLGRGGSDTTAVALAAALGADVCEIYTDVDGLFSADPRIVPKAHRLRTITQEETLELAAHGAKILHLRAVEFARRYGVPLHVRSSFSEKNGTWISDHPANPELKGLVPSAALLDPKEQHMEQPIVSGIAHDRSQDKITVTNLPNSPGVAARVFSICAEVGANIDMIVQNVPVSDPTRANITFTLPEGDAKATLDALEAAQDEIGFEELRYNPNIGKLSLIGTGMRTNPGVSARLFSALSAAGINIDLISTSEIRISVVTKLDDLDRAVQAVHSAFGLDSSETEAVVYGGTGR
>NZ_CP040505.1|WP_005962501.1|82754_83804_+|aspartate-semialdehyde-dehydrogenase
MSGLNVAVVGATGQVGRVMRTLLAERDFPVETIRFFSSSRSSGTTLEWKGQHITVEDVATSDFSGIDIAVFSAGASASREYAPKFAAQGAVVVDNSSAWRRDPEVPLVVSEVNPEDAAKRPKGIIANPNCTTMAAMPVLRPLVDKAGGLERLFVSSYQAVSGSGIKGVQELVSQTRSGVSQDLAALALDGRAITLPEPEVYVAPIAFDVVPLAGSIVEDGSEETDEEQKLRNESRRILHIPDLRVSGTCVRVPVFTGHTLTIHAEFSGAITADEAREVLASAPGVRLVEVPTPLEAAGRDEVLCGRIRQDQAVEGNRGLVLVLSGDNLRKGAALNAIQVAEVVAKELLG
>NZ_CP040505.1|WP_083879454.1|84168_85578_-|ABC-transporter-ATP-binding-protein
MQLTVPQGTSSPSGSSVEPPPSRCSLWRRLPSSRLSGDRMSELIHEVTTPHAEPLLDVHGLALQREARFLHDVSFSLAPGEVLAVVGPSGCGKSTLLLALAGFEECSGEIRVEGTSLQGVVPQRRPSSLVFQSPALFERMSVRENIAFGLHGKALGAKHAHDLVEAAMTRMGIIALADRYPDALSGGQAQRVALARALVTRPKVLLLDEPLAHVGASLAAAIRQTLLREIRRLKIAALYVTHDVEEACLVGDRLLIMDAGRVRQIGAPRELYERPNSEAVARLMGIANVLACEVEEIVSEQTALVRCGSASFHVPAPRVKECGGADSEDIASRGAASGSEDETSGDEVGDAGGIEDSGDAGGVKDSGGDNVVFAKRSLLSLGPALLAMPGEAIELLAAPPSAIIGRHAQVIGAFFVRGIMVYDLETEFGTLVARDSSVREPFTLGDHVEFEFRGGWVIPREGTTRSPEH
>NZ_CP040505.1|WP_005962499.1|85453_87448_-|extracellular-solute-binding-protein
MLGVQTGRFGSVPESIPFLRALDAQVVTYSDSGTDPAHLVAIGRAQTGITFDTYCEEEQRLGAELVTVYPSDGTGFEVGAVSLPKRAEERKQAEDFLAWVVSDEGQALASSIAGQVPISRRLADNLSQRLTALDIAVYGADPEVESLNRSLEIGAWQAQVYAPRGCTPDEITDSPAPACGSVPARDSNFTRIVLGPSIARTGLLSLAAGGIAVLLGSFIALALRFAPRRSLIFMPFILLPGLVPPAVSAETLMLLEAPAYSIWTLLGAVALNATPFAAVIMVFGLSSVSREELLAAKDLGARGPRVARRILAPALVSTVFPSFAVASLMAASDVSASTVNAGREPYLAPLARHALNASSDHSLALKILALYLAASAITALSLTRVLRLKRASASPFAPSAHAPELFGRVSRALGAALVLAGLAALGLIAIVIYRLVVAFLSGSPQTLLFNAARESFLVLLLVVPIAALIGFITALSNLRRMKALNTVALLGLLASPVAGGILVHIIHRRPLEFAGHVLLPPLVGGGSPAGGLIAVLIAYLLLALPAAHFLMVFALSGTRDVRRATEDSGASRTRTIVHVVIPMRRGRILAALAALSAIVMSMSAPAVFVVPAGSAFPAVALIPYAAHGSTGHVLTFGILGGASALTMLALAAAALIPTLRRPHV

Crispr_ID: NZ_CP040505_4

• CRISPR_ID: NZ_CP040505_4
• CRISPR_location: 84051-84132
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP040505_4

Consensus_repeat	Method
CCCATTCCCTGAGTGTCAGAGAG	CRISPRCasFinder

spacers of NZ_CP040505_4

>4.1|84074|36|NZ_CP040505|CRISPRCasFinder
TAGGTACCCTGCTCCCGAGCAATAGTGCTCTGAGCC

CRISPR arrays and Neighbor proteins around NZ_CP040505_4

CRISPR arrays

The CRISPR arrays of NZ_CP040505_4

>merge|NZ_CP040505|4|84051-84132|CRISPRCasFinder
CCCATTCCCTGAGTGTCAGAGAGTAGGTACCCTGCTCCCGAGCAATAGTGCTCTGAGCCCCCATTCCCTGAGTGTCAGGGAG

>NZ_CP040505|4|4|84051-84132|CRISPRCasFinder
CCCATTCCCTGAGTGTCAGAGAG	TAGGTACCCTGCTCCCGAGCAATAGTGCTCTGAGCC
CCCATTCCCTGAGTGTCAGGGAG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005962501.1|82754_83804_+|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl|CDD|237845
NZ_CP040505.1|WP_005962513.1|65755_66154_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962507.1|72985_73582_-|recombination-protein-RecR	unknown	unknown	gnl|CDD|234616
NZ_CP040505.1|WP_005962494.1|89771_90485_-|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|223816
NZ_CP040505.1|WP_005962498.1|87486_87957_-|hypothetical-protein	unknown	unknown	gnl|CDD|270262
NZ_CP040505.1|WP_005962509.1|68758_70099_+|N-acylglucosamine-2-epimerase-superfamily-protein	unknown	unknown	gnl|CDD|369267
NZ_CP040505.1|WP_040313833.1|81240_82557_+|aspartate-kinase	unknown	unknown	gnl|CDD|235843
NZ_CP040505.1|WP_005962505.1|77567_78368_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224026
NZ_CP040505.1|WP_005962504.1|78367_79315_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|226605
NZ_CP040505.1|WP_005962499.1|85453_87448_-|extracellular-solute-binding-protein	unknown	unknown	gnl|CDD|270262
NZ_CP040505.1|WP_005962512.1|66517_68188_-|alpha-D-glucose-phosphate-specific-phosphoglucomutase	unknown	unknown	gnl|CDD|236050
NZ_CP040505.1|WP_005962485.1|96002_96725_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|213222
NZ_CP040505.1|WP_005962488.1|93013_93451_-|NUDIX-domain-containing-protein	unknown	unknown	gnl|CDD|239517
NZ_CP040505.1|WP_005962486.1|94939_96001_+|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl|CDD|223914
NZ_CP040505.1|WP_005962503.1|79885_80881_-|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|380548
NZ_CP040505.1|WP_005962492.1|91424_91787_-|thioredoxin	unknown	unknown	gnl|CDD|239245
NZ_CP040505.1|WP_131247423.1|70921_72088_-|IS1249-family-transposase	unknown	unknown	gnl|CDD|307151
NZ_CP040505.1|WP_083879454.1|84168_85578_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|226361
NZ_CP040505.1|WP_005962490.1|92122_92815_-|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224228
NZ_CP040505.1|WP_005962493.1|90481_91267_-|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl|CDD|223715

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005962501.1|82754_83804_+|aspartate-semialdehyde-dehydrogenase	gnl|CDD|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	0
NZ_CP040505.1|WP_005962486.1|94939_96001_+|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl|CDD|223914	COG0845, AcrA, Membrane-fusion protein [Cell envelope biogenesis, outer membrane].	3.09084e-07
NZ_CP040505.1|WP_005962507.1|72985_73582_-|recombination-protein-RecR	gnl|CDD|234616	PRK00076, recR, recombination protein RecR; Reviewed.	3.07706e-114
NZ_CP040505.1|WP_005962494.1|89771_90485_-|response-regulator-transcription-factor	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.31892e-64
NZ_CP040505.1|WP_005962498.1|87486_87957_-|hypothetical-protein	gnl|CDD|270262	cd13544, PBP2_Fbp_like_1, Substrate binding domain of a putative ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The substrate domain of this group shows a high homology to the periplasmic component of ferric iron transporter (Fbp), but its biochemical characterization has not been performed. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.51225e-16
NZ_CP040505.1|WP_005962509.1|68758_70099_+|N-acylglucosamine-2-epimerase-superfamily-protein	gnl|CDD|369267	pfam07221, GlcNAc_2-epim, N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase). This family contains a number of eukaryotic and bacterial N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) enzymes (EC:5.3.1.8) approximately 500 residues long. This converts N-acyl-D-glucosamine to N-acyl-D-mannosamine.	1.62124e-40
NZ_CP040505.1|WP_040313833.1|81240_82557_+|aspartate-kinase	gnl|CDD|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0
NZ_CP040505.1|WP_005962505.1|77567_78368_-|ABC-transporter-ATP-binding-protein	gnl|CDD|224026	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only].	1.89331e-119
NZ_CP040505.1|WP_005962504.1|78367_79315_-|ABC-transporter-permease	gnl|CDD|226605	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only].	5.75407e-104
NZ_CP040505.1|WP_005962499.1|85453_87448_-|extracellular-solute-binding-protein	gnl|CDD|270262	cd13544, PBP2_Fbp_like_1, Substrate binding domain of a putative ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The substrate domain of this group shows a high homology to the periplasmic component of ferric iron transporter (Fbp), but its biochemical characterization has not been performed. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	7.48006e-22
NZ_CP040505.1|WP_005962512.1|66517_68188_-|alpha-D-glucose-phosphate-specific-phosphoglucomutase	gnl|CDD|236050	PRK07564, PRK07564, phosphoglucomutase; Validated.	0
NZ_CP040505.1|WP_005962485.1|96002_96725_+|ABC-transporter-ATP-binding-protein	gnl|CDD|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	4.33771e-98
NZ_CP040505.1|WP_005962488.1|93013_93451_-|NUDIX-domain-containing-protein	gnl|CDD|239517	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.	2.36528e-24
NZ_CP040505.1|WP_005962503.1|79885_80881_-|ABC-transporter-substrate-binding-protein	gnl|CDD|380548	cd06325, PBP1_ABC_unchar_transporter, type 1 periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.	8.17527e-109
NZ_CP040505.1|WP_005962492.1|91424_91787_-|thioredoxin	gnl|CDD|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	1.69296e-38
NZ_CP040505.1|WP_131247423.1|70921_72088_-|IS1249-family-transposase	gnl|CDD|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.88455e-06
NZ_CP040505.1|WP_083879454.1|84168_85578_-|ABC-transporter-ATP-binding-protein	gnl|CDD|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	4.05299e-87
NZ_CP040505.1|WP_005962490.1|92122_92815_-|TetR/AcrR-family-transcriptional-regulator	gnl|CDD|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	9.34247e-15
NZ_CP040505.1|WP_005962493.1|90481_91267_-|HAMP-domain-containing-histidine-kinase	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.31652e-33

Protein sequences

>NZ_CP040505.1|WP_005962501.1|82754_83804_+|aspartate-semialdehyde-dehydrogenase
MSGLNVAVVGATGQVGRVMRTLLAERDFPVETIRFFSSSRSSGTTLEWKGQHITVEDVATSDFSGIDIAVFSAGASASREYAPKFAAQGAVVVDNSSAWRRDPEVPLVVSEVNPEDAAKRPKGIIANPNCTTMAAMPVLRPLVDKAGGLERLFVSSYQAVSGSGIKGVQELVSQTRSGVSQDLAALALDGRAITLPEPEVYVAPIAFDVVPLAGSIVEDGSEETDEEQKLRNESRRILHIPDLRVSGTCVRVPVFTGHTLTIHAEFSGAITADEAREVLASAPGVRLVEVPTPLEAAGRDEVLCGRIRQDQAVEGNRGLVLVLSGDNLRKGAALNAIQVAEVVAKELLG
>NZ_CP040505.1|WP_040313833.1|81240_82557_+|aspartate-kinase
MALIVQKYGGSSVADVEAMKRVARRVVETHDAGHQVVVVVSAMGDTTDDLLDTAAQITSKAPEREMDILLSAGERISMALLSMAVNELGVDAQAYTGAQAGIKTNSNYGRAQIIGMVPERIARTIREGQVAIVAGFQGISEGEDVTTLGRGGSDTTAVALAAALGADVCEIYTDVDGLFSADPRIVPKAHRLRTITQEETLELAAHGAKILHLRAVEFARRYGVPLHVRSSFSEKNGTWISDHPANPELKGLVPSAALLDPKEQHMEQPIVSGIAHDRSQDKITVTNLPNSPGVAARVFSICAEVGANIDMIVQNVPVSDPTRANITFTLPEGDAKATLDALEAAQDEIGFEELRYNPNIGKLSLIGTGMRTNPGVSARLFSALSAAGINIDLISTSEIRISVVTKLDDLDRAVQAVHSAFGLDSSETEAVVYGGTGR
>NZ_CP040505.1|WP_005962503.1|79885_80881_-|ABC-transporter-substrate-binding-protein
MKRTSLIAATAAAAVLALAGCSGSATSTDASTPASPAGEAYSIGITQITTHTALDSAREGFKKAFEDAGIQVKYDEQNAQGDQATATSIASKFASSDLDLVLAIATPSAQAAAQSITKVPVLFTAVTDPVSAQLVNSLEAPGSNITGTTDMNPVADQISLVKEFAPKAKTLGIIYSSGEVNSEVQVELAKEAAAKDGLQVVESAVTNSAEVQQAAQDLASKVDAIYVPTDNTVVSALASVVQAAEDAKIPLIAGEANSVAQGALATYGIDYSKLGYQTGEMAIRILKEGAEPASLPVEAQKDYELTVNTTTLKALGLELPASLKDRAVTIE
>NZ_CP040505.1|WP_005962504.1|78367_79315_-|ABC-transporter-permease
MLTALDLGLIYGLMALGVYLTFRVLDIADLTVDSSFTTGAAVAAVMITAGQNPWLATLGGFLAGCVAGTVTGLLHVNAGIHPLLAGILTQIGLYSINLRILGKANVPLLRGVETLLTPLRDKGLLGSWISILIFAALIAIVTTLFNWFLSTQIGLGMRSTGDNEGMARAQGVSTGTMKIIGLALSNGLVASSGAIIAQYQGYADISMGIGLIVAGLASVIIGTALIGSQGVWVTSLFVVIGSIVYRVIIQLALGVEFLEANDMKLISAIIVFAALMIPRIGIFSKIRERRRNRSLVPEPDITHTPEERDNEKVVF
>NZ_CP040505.1|WP_005962505.1|77567_78368_-|ABC-transporter-ATP-binding-protein
MLDIEAVTKTFFRRTVNERVALSDISLHLDPGDFVTIIGSNGAGKSTLLNIVSGRYQADVGRVKIEGEDVTKLPDYKVAKYVSRVFQDPMAGTAPHLSIEENLALAWSRGRGRTLGPALTQKKRQMFRDVLAPLEQGLENRLHAKVGLLSGGQRQALSLTMATFSKPKVLLLDEHTAALDPKRAALITQITREAVERQHLTTLMVTHNMEQALSMGNRLIMMHEGRIIFELAGEEKKRATVTSLLAEFDKLRGKEEQGLSDRMLLA
>NZ_CP040505.1|WP_005962507.1|72985_73582_-|recombination-protein-RecR
MYEGALQDLIDEFGRLPGIGPKSAQRMAMHVLDSEPDEVARLVDAIQAVRKRVHHCEICGNLTEEEACSICRDPRRDPTTLCVVQEPKDIQAIEGSRVFHGRYHVLGGVIDPIHGIGPDQLRIRQLLTRLQDDRITEVIIATNPNVEGEATAAYLARTLATIGITTSRLAMGLPMGGDLEYADSITLGRALEGRRSMA
>NZ_CP040505.1|WP_131247423.1|70921_72088_-|IS1249-family-transposase
MSVDKRPKCPICRAPMNANGKTSSRTPRWRCRNCSFSTVLKRPDVTRRHDLEAFINYATGKTSQAERDGTLTGRSFRQRTSWCWQVPPPLPVMDGVIHDQVFIDGIFLSHSWVILIATDGRTPLNWVTAGRENATAYTQLLSPLPPPGIITTDGAGGALAAIRTLWGPDQPVQRCLVHVHRNNTVDLTHNPHTPAGKALKGLSHSLLRVTTMDEAAHWASLLAAFHTEYAHYLKERTYASQDPEKAAATGKKWWYTHERDRRVYYRLERLLKNKQLFTFLTDPGRPNLASTTNPIESLNAQIRALLRAHAGWNTTRQITAIHWFLAHHQHPINAATVLAEWDKHARQPHTIIPTTHKQQPRPDGPTHYDNAYSPDTGFHTRKGWAGRT
>NZ_CP040505.1|WP_005962509.1|68758_70099_+|N-acylglucosamine-2-epimerase-superfamily-protein
MGWFDSVEHNRWLSTQMQALIAEAEGAIVPTGFAHLTEEGEPDPERGIDLAVTGRMLYVFSLGVLMGLPGTRRYADHALKSIGTYFKDPVNGGLWISIKPEPDEDGHGIPWDEEGRSKSQYHNAYVILGLAAATVANRQGAYELLNDALHDQERHWIEPNGLVRDQYDEAFTQALPLRTLGTLLHTAEAYLAAAEATTDPVWIDRAEQMAAFANKIASEKSSRLPEYYDDEWKPLGEEPAGYVDGRRIYHGYVTGHAMQWSRIMLQLRAALRSLGRPQPDYLMECAVDLFERARVDGWRRNNGEPGFSTSVDCEGSPVTGEDEHQQWVVCEGICATVAIRRAMLDDGATPGEIEHFEHCYRSFLDYVNDYLILKPGRWLRSLDANNKRYATLKCSPWDVYHSIQTTLAVRVPLWPPYASALSRDLLDKPKEAPSDKKSWNSFFRRH
>NZ_CP040505.1|WP_005962512.1|66517_68188_-|alpha-D-glucose-phosphate-specific-phosphoglucomutase
MHERAGTLALPEDLINVEEVLSAYYDIEPDPSIIDQRVSFGTSGHRGSSLDGKFNEAHIVAITAAIVEYRASQGIDGPLFIGRDTHALSEPAWRTALEVLAAAGVSVKIDSHSSYTPTPAVSVAILGANGAPQALRTSGPGLADGIVVTPSHNPPRDGGFKYNPPHGGPADTDATGWIANRANEILEEGWRKIPRIIGAPLFEDEHLEKFDYLTYYVDQLDQVIDIDAIREAGVRIGADPLGGASVDYWAAIAERYGLELTVVNPVVDPAWPFMTLDWDGKIRMDCSSPNAMASLRRAMTPDENGNTPYDIATGNDADSDRHGIVTPDGLMNPNHYLAVAIDYLFQHRPGWKDDAAVGKTLVSSALIDRVVASMGRKLIEVPVGFKYFVPGLLDGSVGFGGEESAGASFLRKDGTVWSTDKDGIILALLASEILAVTGKTPSQLHAELVERFGASAYARIDAPANREQKAKLAALSPEDVTATELAGEPITARLVRAPGNDAAIGGLKVTTENAWFAARPSGTEDVYKIYAESFKGAEHLAEVQEEAKKVVSDALG
>NZ_CP040505.1|WP_005962513.1|65755_66154_-|hypothetical-protein
MIELDYAFLADYAAIQESKLTAVGASFTRMVVREIPSQIMLSVAGRVRVSTDIDELNLAIRATVPQQSYQLDGTLRISDLKNLPEYGEGKRGAMFALQFSLPLMELGTYVIEVDILETEGVDRVLKFEAVSL
>NZ_CP040505.1|WP_083879454.1|84168_85578_-|ABC-transporter-ATP-binding-protein
MQLTVPQGTSSPSGSSVEPPPSRCSLWRRLPSSRLSGDRMSELIHEVTTPHAEPLLDVHGLALQREARFLHDVSFSLAPGEVLAVVGPSGCGKSTLLLALAGFEECSGEIRVEGTSLQGVVPQRRPSSLVFQSPALFERMSVRENIAFGLHGKALGAKHAHDLVEAAMTRMGIIALADRYPDALSGGQAQRVALARALVTRPKVLLLDEPLAHVGASLAAAIRQTLLREIRRLKIAALYVTHDVEEACLVGDRLLIMDAGRVRQIGAPRELYERPNSEAVARLMGIANVLACEVEEIVSEQTALVRCGSASFHVPAPRVKECGGADSEDIASRGAASGSEDETSGDEVGDAGGIEDSGDAGGVKDSGGDNVVFAKRSLLSLGPALLAMPGEAIELLAAPPSAIIGRHAQVIGAFFVRGIMVYDLETEFGTLVARDSSVREPFTLGDHVEFEFRGGWVIPREGTTRSPEH
>NZ_CP040505.1|WP_005962499.1|85453_87448_-|extracellular-solute-binding-protein
MLGVQTGRFGSVPESIPFLRALDAQVVTYSDSGTDPAHLVAIGRAQTGITFDTYCEEEQRLGAELVTVYPSDGTGFEVGAVSLPKRAEERKQAEDFLAWVVSDEGQALASSIAGQVPISRRLADNLSQRLTALDIAVYGADPEVESLNRSLEIGAWQAQVYAPRGCTPDEITDSPAPACGSVPARDSNFTRIVLGPSIARTGLLSLAAGGIAVLLGSFIALALRFAPRRSLIFMPFILLPGLVPPAVSAETLMLLEAPAYSIWTLLGAVALNATPFAAVIMVFGLSSVSREELLAAKDLGARGPRVARRILAPALVSTVFPSFAVASLMAASDVSASTVNAGREPYLAPLARHALNASSDHSLALKILALYLAASAITALSLTRVLRLKRASASPFAPSAHAPELFGRVSRALGAALVLAGLAALGLIAIVIYRLVVAFLSGSPQTLLFNAARESFLVLLLVVPIAALIGFITALSNLRRMKALNTVALLGLLASPVAGGILVHIIHRRPLEFAGHVLLPPLVGGGSPAGGLIAVLIAYLLLALPAAHFLMVFALSGTRDVRRATEDSGASRTRTIVHVVIPMRRGRILAALAALSAIVMSMSAPAVFVVPAGSAFPAVALIPYAAHGSTGHVLTFGILGGASALTMLALAAAALIPTLRRPHV
>NZ_CP040505.1|WP_005962498.1|87486_87957_-|hypothetical-protein
MTTLRLPILPIAGLVLVIAAFTSLLALLAPSRADLLVVCSNTASVCDALAEHYEQHTRTSVDVVRVPTSEALSHLAATHGDSEFDVWLGGPAEAHAEAERLGLLRPVEGIDVSGLPEHYHSASWFGFYGGSSRSAQPLRRVSSSPPGTHSYVHAFP
>NZ_CP040505.1|WP_005962494.1|89771_90485_-|response-regulator-transcription-factor
MTPRALVVDDEPQMLSIVSFALQTQGFECLSVANTARAWEHLAAHSVNLVVLDIMTPTGSGIDLVKRIRARGDDVPIILLTALGDEEDRIAGLEAGADDYVTKPFSPRELALRAQAIVRRSTPAAPERILDAGELHIDVDRHAASWKGEPITLSPTELKVLATLVARVGQDVAWRDLLNEAWETTDATGAHNMIKTTIYRLRRQLERVGMDPGVIQPVRGRGYRLLIDEGEQPLPES
>NZ_CP040505.1|WP_005962493.1|90481_91267_-|HAMP-domain-containing-histidine-kinase
MEYLALTGWSFCVLFLIFFLHERATSKHLRKELESLRLRALETANAPAVLAHEIRTPLALIRGAGELLSEGMAGELTDTQRQFLHTMMTNTQRVIALAESMLTDLKLHSSDPLATEPVDIREVVASTAREMRRISDTPIRVDAPGGVLIVPANAPMIRQLIWNLLNNSLRHASSEAVIVSVAPAEGGGALISIEDSGTDIPEDEQETVLAPFISDSAPNPGTGIGMAVAGRIVEAHGGSLMIDSVEGRGTAVHIRLPGERS
>NZ_CP040505.1|WP_005962492.1|91424_91787_-|thioredoxin
MATVALTADTFEKTISDNGIVLVDFWASWCGPCRQFAPVFEESSNKNPDIVFAKVDTDAEQDLARAGAITSIPTLMAFRDGIAIFRQAGALPGPALEDLISQIRALDMDEIRKQIAESEK
>NZ_CP040505.1|WP_005962490.1|92122_92815_-|TetR/AcrR-family-transcriptional-regulator
MPKIIGESLADHRTLTRKKLFDALGQLLAEQPFDTITMSQIATRAKVGRTAVYNHFEDKEVLLLAYMSEATKEFANILANAVENEPNPIEQLRLYVRTHLEMTSRYHLAGRIHLRDQVSSQNSGHLHEHANVIGMMLLRILGDAMRQKLIPTQDAYGLIRLIQACLAGQHLPSSQPERRTRITQIEAFILRAVGSPASTISKIPSPIRTGDNLESAEDRETSYMRCPVAN
>NZ_CP040505.1|WP_005962488.1|93013_93451_-|NUDIX-domain-containing-protein
MTPTPVVAAAIVDSLANPRHLLCAARAYPPELAGGFELPGGKIDEGEEPLDALAREIHEELGTRISIGPEVLTPEGEWWPIMQERRMGVWIAEVEQGAPEPAPRGSHSELRWVPLEELALLDWIGNDLLIALAVANRCARMRRIN
>NZ_CP040505.1|WP_005962486.1|94939_96001_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MSSSTRSKRVLAIARTLIWAIIALALVKFAFFPANGDDTAESLNPDANYTQITVTPTKADITNTVRAKGTVQSDPSVTVKASGEGEVTYIGALDGTAVESGTPILEVRKEIPGETTTSVDAEGTPQMQTTPTTYSYTTIYANATGTLHLNALIGQRFSIGDPVATIQPSTFSAFATLNADQLYRIQNAPSEATLTITNGPAPFTCSGLEIVTPEKTTKSEDQNNQQNTQTGIQAKCPIPAEQTVFPGLQLTMEIVSGQASQVLTLPVSAVEGRFQTGYVYLVGEERTKPQKHPVKLGITDGKIVEITEGLSESDSVLEFTPSAKKDNTKRESDTGDLGAPIAGNSATTSEADS
>NZ_CP040505.1|WP_005962485.1|96002_96725_+|ABC-transporter-ATP-binding-protein
MSFIELEGVTRTVTLPDESDLRILTGVDLKVEAGEHVSIVGRSGTGKSTMLNIIGMLDLPTAGRYTIDGIDVASLREGRRARLRGDTVGFIFQQFNIFNARTALENVEVPLLYSNGARFWKRRELATRMLERVGLGDRVDSHPTQMSGGEQQRIAIARALVRSPKIILADEPTGALDPDTGGSVMELLETVAAENNAALLVITHDPKVAERADRVLELYDGTLHEGRVSLPSSESREVKA

Crispr_ID: NZ_CP040505_5

• CRISPR_ID: NZ_CP040505_5
• CRISPR_location: 98332-98592
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 4 spacers

Consensus repeat of NZ_CP040505_5

Consensus_repeat	Method
GAGACTTCCGGATGCGAGCGGACGTGAG	CRISPRCasFinder

spacers of NZ_CP040505_5

>5.1|98360|21|NZ_CP040505|CRISPRCasFinder
GCTCCGGATGTGAGAGGGCAT
>5.2|98409|32|NZ_CP040505|CRISPRCasFinder
TGCCCGGGCATCATGCCCGTCTCCACACCAGA
>5.3|98469|35|NZ_CP040505|CRISPRCasFinder
GCTCGAGGCATGAAAGCGCGTGAGGTGGTGCCTGT
>5.4|98532|33|NZ_CP040505|CRISPRCasFinder
AGAATCACCGACACCCTGCGCAAACGCGACGAC

CRISPR arrays and Neighbor proteins around NZ_CP040505_5

CRISPR arrays

The CRISPR arrays of NZ_CP040505_5

>merge|NZ_CP040505|5|98332-98592|CRISPRCasFinder
GAGGCTTCCGGATGCGAGGGGGCGTGAGGCTCCGGATGTGAGAGGGCATGAGCCTTCCGAATATGAGGGGGCGTGAGTGCCCGGGCATCATGCCCGTCTCCACACCAGAGAGCCTTCCAGATGCGAGAACGCATGAGGCTCGAGGCATGAAAGCGCGTGAGGTGGTGCCTGTGAGACTTCCGGATGCGAGCGGACGTGAGAGAATCACCGACACCCTGCGCAAACGCGACGACGAGACTTCCGGATGCGAGCGGACGTGAG

>NZ_CP040505|5|5|98332-98592|CRISPRCasFinder
GAGGCTTCCGGATGCGAGGGGGCGTGAG	GCTCCGGATGTGAGAGGGCAT
GAGCCTTCCGAATATGAGGGGGCGTGAG	TGCCCGGGCATCATGCCCGTCTCCACACCAGA
GAGCCTTCCAGATGCGAGAACGCATGAG	GCTCGAGGCATGAAAGCGCGTGAGGTGGTGCCTGT
GAGACTTCCGGATGCGAGCGGACGTGAG	AGAATCACCGACACCCTGCGCAAACGCGACGAC
GAGACTTCCGGATGCGAGCGGACGTGAG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005962486.1|94939_96001_+|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl|CDD|223914
NZ_CP040505.1|WP_005962482.1|100411_100993_+|dCTP-deaminase	unknown	unknown	gnl|CDD|234753
NZ_CP040505.1|WP_005962499.1|85453_87448_-|extracellular-solute-binding-protein	unknown	unknown	gnl|CDD|270262
NZ_CP040505.1|WP_040313568.1|103118_104168_+|hypothetical-protein	unknown	unknown	gnl|CDD|377072
NZ_CP040505.1|WP_005962493.1|90481_91267_-|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl|CDD|223715
NZ_CP040505.1|WP_005962498.1|87486_87957_-|hypothetical-protein	unknown	unknown	gnl|CDD|270262
NZ_CP040505.1|WP_005962494.1|89771_90485_-|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|223816
NZ_CP040505.1|WP_005962471.1|115257_115560_-|DUF3618-domain-containing-protein	unknown	unknown	gnl|CDD|378834
NZ_CP040505.1|WP_005962483.1|98908_99820_-|A/G-specific-adenine-glycosylase	unknown	unknown	gnl|CDD|224115
NZ_CP040505.1|WP_005962473.1|112462_113608_+|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl|CDD|235439
NZ_CP040505.1|WP_040313566.1|115556_116012_-|phage-holin-family-protein	unknown	unknown	gnl|CDD|377816
NZ_CP040505.1|WP_040313825.1|110578_112150_+|amidophosphoribosyltransferase	unknown	unknown	gnl|CDD|236113
NZ_CP040505.1|WP_005962488.1|93013_93451_-|NUDIX-domain-containing-protein	unknown	unknown	gnl|CDD|239517
NZ_CP040505.1|WP_005962484.1|96721_98161_+|ABC-transporter-permease	unknown	unknown	gnl|CDD|182528
NZ_CP040505.1|WP_005962490.1|92122_92815_-|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224228
NZ_CP040505.1|WP_005962492.1|91424_91787_-|thioredoxin	unknown	unknown	gnl|CDD|239245
NZ_CP040505.1|WP_131247191.1|101576_102638_+|PRTRC-system-protein-E	unknown	unknown	unknown
NZ_CP040505.1|WP_005962479.1|104401_107134_+|hypothetical-protein	unknown	unknown	gnl|CDD|227588
NZ_CP040505.1|WP_005962472.1|114804_115059_-|DUF3073-domain-containing-protein	unknown	unknown	gnl|CDD|378620
NZ_CP040505.1|WP_005962485.1|96002_96725_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|213222

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005962486.1|94939_96001_+|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl|CDD|223914	COG0845, AcrA, Membrane-fusion protein [Cell envelope biogenesis, outer membrane].	3.09084e-07
NZ_CP040505.1|WP_005962482.1|100411_100993_+|dCTP-deaminase	gnl|CDD|234753	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed.	2.83085e-87
NZ_CP040505.1|WP_005962499.1|85453_87448_-|extracellular-solute-binding-protein	gnl|CDD|270262	cd13544, PBP2_Fbp_like_1, Substrate binding domain of a putative ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The substrate domain of this group shows a high homology to the periplasmic component of ferric iron transporter (Fbp), but its biochemical characterization has not been performed. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	7.48006e-22
NZ_CP040505.1|WP_040313568.1|103118_104168_+|hypothetical-protein	gnl|CDD|377072	pfam03595, SLAC1, Voltage-dependent anion channel. This family of transporters has ten alpha helical transmembrane segments. The structure of a bacterial homolog of SLAC1 shows it to have a trimeric arrangement. The pore is composed of five helices with a conserved Phe residue involved in gating. One homolog, Mae1 from the yeast Schizosaccharomyces pombe, functions as a malate uptake transporter; another, Ssu1 from Saccharomyces cerevisiae and other fungi including Aspergillus fumigatus, is characterized as a sulfite efflux pump; and TehA from Escherichia coli is identified as a tellurite resistance protein by virtue of its association in the tehA/tehB operon. In plants, this family is found in the stomatal guard cells functioning as an anion-transporting pore. Many homologs are incorrectly annotated as tellurite resistance or dicarboxylate transporter (TDT) proteins.	0.000769453
NZ_CP040505.1|WP_005962493.1|90481_91267_-|HAMP-domain-containing-histidine-kinase	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.31652e-33
NZ_CP040505.1|WP_005962498.1|87486_87957_-|hypothetical-protein	gnl|CDD|270262	cd13544, PBP2_Fbp_like_1, Substrate binding domain of a putative ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The substrate domain of this group shows a high homology to the periplasmic component of ferric iron transporter (Fbp), but its biochemical characterization has not been performed. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.51225e-16
NZ_CP040505.1|WP_005962494.1|89771_90485_-|response-regulator-transcription-factor	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.31892e-64
NZ_CP040505.1|WP_005962483.1|98908_99820_-|A/G-specific-adenine-glycosylase	gnl|CDD|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	1.33392e-75
NZ_CP040505.1|WP_005962473.1|112462_113608_+|phosphoribosylformylglycinamidine-cyclo-ligase	gnl|CDD|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	3.84211e-159
NZ_CP040505.1|WP_040313566.1|115556_116012_-|phage-holin-family-protein	gnl|CDD|377816	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III. Phage_holin_3_6 is a family of small hydrophobic proteins with two or three transmembrane domains of the Hol-X family. Holin proteins are produced by double-stranded DNA bacteriophages that use an endolysin-holin strategy to achieve lysis of their hosts. The endolysins are peptidoglycan-degrading enzymes that are usually accumulated in the cytosol until access to the cell wall substrate is provided by the holin membrane lesion.	2.72864e-15
NZ_CP040505.1|WP_040313825.1|110578_112150_+|amidophosphoribosyltransferase	gnl|CDD|236113	PRK07847, PRK07847, amidophosphoribosyltransferase; Provisional.	0
NZ_CP040505.1|WP_005962488.1|93013_93451_-|NUDIX-domain-containing-protein	gnl|CDD|239517	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.	2.36528e-24
NZ_CP040505.1|WP_005962484.1|96721_98161_+|ABC-transporter-permease	gnl|CDD|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	2.42059e-18
NZ_CP040505.1|WP_005962490.1|92122_92815_-|TetR/AcrR-family-transcriptional-regulator	gnl|CDD|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	9.34247e-15
NZ_CP040505.1|WP_005962492.1|91424_91787_-|thioredoxin	gnl|CDD|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	1.69296e-38
NZ_CP040505.1|WP_005962471.1|115257_115560_-|DUF3618-domain-containing-protein	gnl|CDD|378834	pfam12277, DUF3618, Protein of unknown function (DUF3618). This domain family is found in bacteria, and is approximately 50 amino acids in length.	9.55224e-07
NZ_CP040505.1|WP_005962479.1|104401_107134_+|hypothetical-protein	gnl|CDD|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	4.13621e-42
NZ_CP040505.1|WP_005962472.1|114804_115059_-|DUF3073-domain-containing-protein	gnl|CDD|378620	pfam11273, DUF3073, Protein of unknown function (DUF3073). This family of proteins with unknown function appears to be restricted to Actinobacteria.	6.7317e-23
NZ_CP040505.1|WP_005962485.1|96002_96725_+|ABC-transporter-ATP-binding-protein	gnl|CDD|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	4.33771e-98

Protein sequences

>NZ_CP040505.1|WP_005962484.1|96721_98161_+|ABC-transporter-permease
MMSPEQILGPIVEAWGEVKAQKARVILSLVGVVAAVAAMSTVIALGDLVLQASREMIDAEMGRSVTLHVSASKVSEDEGEGTEVSVSEHNYGGSGSSNPMNAASPDPQGQGQNPQGQGQNEGANVSPGGISDPMGEAMETLASRFEIPYWSRFEKGYVSFEEVWKAEETGQFRGYPTIKNRLEGNGEIGVYAVDPSYSTIFRLQPSHGRWIEEGDADQRLVPVVINSILWNSLGRAPIEDPIILTSDDEAKTRYRVVGVIDASSQWDEAKMYVDYRAWQFVKLGGPNSSGTGSSARPSVEMLVWSGEEQAEQAREVLPDALAAILGKGWKGSVYGGEKVETGESALQTAQTVVMIVGGIVILLGALGLLNVAIVTVRQRIREIGIRRAMGASAKRVFFAVFMESVVATFVAGVIGVGLAIVIVRFLPLESLDIVLQGKPAFPVNAAISGVAISTAIGALCGIIPAFAAVRVKPIDAIRY
>NZ_CP040505.1|WP_005962485.1|96002_96725_+|ABC-transporter-ATP-binding-protein
MSFIELEGVTRTVTLPDESDLRILTGVDLKVEAGEHVSIVGRSGTGKSTMLNIIGMLDLPTAGRYTIDGIDVASLREGRRARLRGDTVGFIFQQFNIFNARTALENVEVPLLYSNGARFWKRRELATRMLERVGLGDRVDSHPTQMSGGEQQRIAIARALVRSPKIILADEPTGALDPDTGGSVMELLETVAAENNAALLVITHDPKVAERADRVLELYDGTLHEGRVSLPSSESREVKA
>NZ_CP040505.1|WP_005962486.1|94939_96001_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MSSSTRSKRVLAIARTLIWAIIALALVKFAFFPANGDDTAESLNPDANYTQITVTPTKADITNTVRAKGTVQSDPSVTVKASGEGEVTYIGALDGTAVESGTPILEVRKEIPGETTTSVDAEGTPQMQTTPTTYSYTTIYANATGTLHLNALIGQRFSIGDPVATIQPSTFSAFATLNADQLYRIQNAPSEATLTITNGPAPFTCSGLEIVTPEKTTKSEDQNNQQNTQTGIQAKCPIPAEQTVFPGLQLTMEIVSGQASQVLTLPVSAVEGRFQTGYVYLVGEERTKPQKHPVKLGITDGKIVEITEGLSESDSVLEFTPSAKKDNTKRESDTGDLGAPIAGNSATTSEADS
>NZ_CP040505.1|WP_005962488.1|93013_93451_-|NUDIX-domain-containing-protein
MTPTPVVAAAIVDSLANPRHLLCAARAYPPELAGGFELPGGKIDEGEEPLDALAREIHEELGTRISIGPEVLTPEGEWWPIMQERRMGVWIAEVEQGAPEPAPRGSHSELRWVPLEELALLDWIGNDLLIALAVANRCARMRRIN
>NZ_CP040505.1|WP_005962490.1|92122_92815_-|TetR/AcrR-family-transcriptional-regulator
MPKIIGESLADHRTLTRKKLFDALGQLLAEQPFDTITMSQIATRAKVGRTAVYNHFEDKEVLLLAYMSEATKEFANILANAVENEPNPIEQLRLYVRTHLEMTSRYHLAGRIHLRDQVSSQNSGHLHEHANVIGMMLLRILGDAMRQKLIPTQDAYGLIRLIQACLAGQHLPSSQPERRTRITQIEAFILRAVGSPASTISKIPSPIRTGDNLESAEDRETSYMRCPVAN
>NZ_CP040505.1|WP_005962492.1|91424_91787_-|thioredoxin
MATVALTADTFEKTISDNGIVLVDFWASWCGPCRQFAPVFEESSNKNPDIVFAKVDTDAEQDLARAGAITSIPTLMAFRDGIAIFRQAGALPGPALEDLISQIRALDMDEIRKQIAESEK
>NZ_CP040505.1|WP_005962493.1|90481_91267_-|HAMP-domain-containing-histidine-kinase
MEYLALTGWSFCVLFLIFFLHERATSKHLRKELESLRLRALETANAPAVLAHEIRTPLALIRGAGELLSEGMAGELTDTQRQFLHTMMTNTQRVIALAESMLTDLKLHSSDPLATEPVDIREVVASTAREMRRISDTPIRVDAPGGVLIVPANAPMIRQLIWNLLNNSLRHASSEAVIVSVAPAEGGGALISIEDSGTDIPEDEQETVLAPFISDSAPNPGTGIGMAVAGRIVEAHGGSLMIDSVEGRGTAVHIRLPGERS
>NZ_CP040505.1|WP_005962494.1|89771_90485_-|response-regulator-transcription-factor
MTPRALVVDDEPQMLSIVSFALQTQGFECLSVANTARAWEHLAAHSVNLVVLDIMTPTGSGIDLVKRIRARGDDVPIILLTALGDEEDRIAGLEAGADDYVTKPFSPRELALRAQAIVRRSTPAAPERILDAGELHIDVDRHAASWKGEPITLSPTELKVLATLVARVGQDVAWRDLLNEAWETTDATGAHNMIKTTIYRLRRQLERVGMDPGVIQPVRGRGYRLLIDEGEQPLPES
>NZ_CP040505.1|WP_005962498.1|87486_87957_-|hypothetical-protein
MTTLRLPILPIAGLVLVIAAFTSLLALLAPSRADLLVVCSNTASVCDALAEHYEQHTRTSVDVVRVPTSEALSHLAATHGDSEFDVWLGGPAEAHAEAERLGLLRPVEGIDVSGLPEHYHSASWFGFYGGSSRSAQPLRRVSSSPPGTHSYVHAFP
>NZ_CP040505.1|WP_005962499.1|85453_87448_-|extracellular-solute-binding-protein
MLGVQTGRFGSVPESIPFLRALDAQVVTYSDSGTDPAHLVAIGRAQTGITFDTYCEEEQRLGAELVTVYPSDGTGFEVGAVSLPKRAEERKQAEDFLAWVVSDEGQALASSIAGQVPISRRLADNLSQRLTALDIAVYGADPEVESLNRSLEIGAWQAQVYAPRGCTPDEITDSPAPACGSVPARDSNFTRIVLGPSIARTGLLSLAAGGIAVLLGSFIALALRFAPRRSLIFMPFILLPGLVPPAVSAETLMLLEAPAYSIWTLLGAVALNATPFAAVIMVFGLSSVSREELLAAKDLGARGPRVARRILAPALVSTVFPSFAVASLMAASDVSASTVNAGREPYLAPLARHALNASSDHSLALKILALYLAASAITALSLTRVLRLKRASASPFAPSAHAPELFGRVSRALGAALVLAGLAALGLIAIVIYRLVVAFLSGSPQTLLFNAARESFLVLLLVVPIAALIGFITALSNLRRMKALNTVALLGLLASPVAGGILVHIIHRRPLEFAGHVLLPPLVGGGSPAGGLIAVLIAYLLLALPAAHFLMVFALSGTRDVRRATEDSGASRTRTIVHVVIPMRRGRILAALAALSAIVMSMSAPAVFVVPAGSAFPAVALIPYAAHGSTGHVLTFGILGGASALTMLALAAAALIPTLRRPHV
>NZ_CP040505.1|WP_005962483.1|98908_99820_-|A/G-specific-adenine-glycosylase
MREKILDWFDANKRELPMRAPGNSPWGTLVGEVMSQQTPMPRVQPIWQRWMELWPTPQDLAAASPAKVLVEWERLGYPSRALRLRECAIAIAKRPGGRVPADYEELCSLPGIGPYTASALMSFQFHARIAVLDTNIRRVLVRTVLGCERPSSSAPSKQERILADSLLPVEGAECARWNVAIMEFGALHCVQRSPACDSCPLVSSCRWFLAGKPASERRGRAQAWAGTDRQARGRVIALLRSLHRSPDEARAEDASPSVSRAQALEAAALPGADADQAPRVLASLITDGLVVIQDEDRIALPSS
>NZ_CP040505.1|WP_005962482.1|100411_100993_+|dCTP-deaminase
MLLSDRDILAGLDSGRIRLDPLDRSLVQPASIDVRLDRLFRLFDNHRYAVIDPAVEQSELTHEVDVGPDEPFVLHPGEFVLGATYECVSLGDDIAARLEGKSSLGRLGLLTHSTAGFIDPGFSGHVTLELSNTATMPILLHPGMKVGQLCFFDLSSPAEHPYGSEGLGSHYQGQRGPTPSRTHLRFSRTRIGD
>NZ_CP040505.1|WP_131247191.1|101576_102638_+|PRTRC-system-protein-E
MQRADALSPIAASLSASEPESVIGLDDAHSHHLLLLSDEVDQAEIEALALSIWDDARWEGAGRLRLTSGVLLEGPWRLDLAARKELRTPAVLTKVWVLRCPHTQRSPVPQWAIGVDEWAKVFPEGMPTGLEYRVLEAVKRMARRLGGALRIADSGELIAPDPDSAVSLSVFSPRWLNAGELVALLSEEFPQIRDSRELAVRQAKATRAEDAALERALEAAGLTRAEIEMKILRAQKSVSPEVGGENHLLEGYTLLTPIANRSDLAIEVCLVPTPPQVLRWESWTTGFVVEYSLRWLQAASLQAPTRPSRTARLERIRSSHDIERAASLIARAVSGSVIDEDGFLVALDDALAD
>NZ_CP040505.1|WP_040313568.1|103118_104168_+|hypothetical-protein
MSEQDAEEPREVELIFEDETPSDAEVPGDAEASNDAEAPSDAEASNDAGAPEAHSYEDSNAEAQAGTERSIGSLPRFTQSSTGHDYESRPAGIRSYTPFGSEGGSSRSYSPPRGAVPSSSHGLFDEASSDSPEATESIHALWTGPLPTALLAGCAMAIGVFGVVAKNVGGAFAFAGLSVPLTGAEGALVFIARGIGYLFSFLGALLLVFAVWALLRRRGEKAAASALLVSMWTAGLVSSAMALLALGPVPYIVSAIAFPAALSTVSLVLVKQRPSGAFRKGEVLSVFVLVALTTVFIAAGRATLVGSIASLLLGTVGALLGVRLWNRWWAPILDAREYFRSRRHRSFDR
>NZ_CP040505.1|WP_005962479.1|104401_107134_+|hypothetical-protein
MLSSASLIGAVVSAVLALGPVSAPTKGTDRADEPSHPVMRIALTTSTGSPTELASAGLDKLPLSSGQASGRPLNPLNLWLSAQNDAKKSSAATPSAKEGRKETLSTKEGATQSPSSTQGVEGESSSLSPLSSSPDALIKDTKVLTEPLEVSDFFVAGFIWDDSAASTDERTFLIRVREGQTWSDWYEIERDSDTRPDDAQEASGTEPFVTAGATGVQILVAGAEEMPKNLELVLVPENAEGEKILEESEIETTNAGGTPLNEPLDQSNDEGLYDSFSEASGAASSLRQAASSSENASSQESGAASASDDATPVLEPSWGAPKPTGRGIGAKSSAFLRSLFPATTTANGLPIPVVTRSEWGGSASEPYDWGAEYSYAPFVVVHHTVGTNNYTCSQSHSIVRGIYQYHAYSLDWGDIGYNFLVDKCGQAFEGRWGSLNSSGGNMVAAGHSLGFNTGTMGISMLGNYTSVAPSNETLSSVGALAGWHLDKAGVSPSSSGVYVSRGNGKYPKGTAVTLPRISGHRDNGYTACPGDAAYPLLWKVRQAALEVSSSAIEGTPGAPIAVTGQWVADGETWYFRTSSSNSYVSNTWALINNEVYFFDWSGRVLTGWYAFRGNWYYLDPSGALHKGELSIQSGTYMLDESTGAMFTGWKQEGTGWRYYKPDGARAYGWTAVGSNWYYLDPASGIMQTGQQTIKGKTYLLYSSGEMASGWVKDESGWRYYGADGAQVGGWAKIGGEWYYLDPQTGVMQSGRLSINGVTYFLAASGQVQYGWYAHNGNWFYLHPSDGAMLTTWVAVNGTWYYMEPDSGQMRTGWLQLGDVWYYLDGSGAMRTGWLQLGNRWYYLDASGAMRTGWLQLGNRWYYLDASGAMRTGWLLLGNTWYYLDSSGAMVTGTQSIDGVSYSFTASGALR
>NZ_CP040505.1|WP_040313825.1|110578_112150_+|amidophosphoribosyltransferase
MDQTLTDREIFEDDRPHDHCGVFGVWAPGEDVSRLTYFSLYALQHRGQQSAGIATSNGEQILVYKDQGLVNQVFTEQTLQGLQGHLALGHVRYATTGEDTWRNAQPTLGPTPSGTLALCHNGNLTNTVELRDLARSIADEGEDVERGASTDTSVVTALLGLAERIPGPVPFIPPAVALADPIGEGDASSATPGEQLVSVSVDAEPAALVAPALKVLPRLKGAFSLVFMDEDTLYGARDPHGYRPLVLGRLYSGWVLASETAALDLCGASFVREIEPGELVAIDSTGVHSRHFAVRRSNTCVFEYVYLARPDTVIGDRQIVAARREMGAILAQESPVDADLVIPTPESGTPAAIGYAEASGIPFAQGLVKNAYVGRTFIQPTQSLRQLGIRLKLNPLREVIAGKRLIVIDDSIVRGNTQRALVRMLREAGAAEVHVKISSPPVAWPCFFGIDFPTRAELIASSMDVEGVRASIGADSLSYLSMEGMVRATRQGSSLCLGCFNGAYPEQIPKGTPIPGTPGAFAC
>NZ_CP040505.1|WP_005962473.1|112462_113608_+|phosphoribosylformylglycinamidine-cyclo-ligase
MSDDTPLDYASAGVDTCAGDRAVELMKEAVSRTHDASVLGATGGFAGLVDASALLGMERPLLATSTDGVGTKIAIAQQMDIHDTIGQDLVGMVVDDIVVIGARPVLMTDYIACGHVIPERIAAIVTGIARACEATGTPLVGGETAEHPGVMDPDDYDIAGAATGVVDASKLLGPDRVANGDVLIAMASSGLHSNGYSLVRSVVARTGLPLEAKVEEFGRTLGEELLEPTRLYTKLCLDMVDTLGAGEGASGIHAFSHVTGGGLGANLSRVLPLGAVADVDRASWIVPPVFDWVRRGGSVTWTGMEDSLNLGVGMVGVVGAQSAEEVLRISRAAGVDAWVLGEVSFPSELPVDSGAFEGRVVSGTKGVNGGAVRLRGDYRVG
>NZ_CP040505.1|WP_005962472.1|114804_115059_-|DUF3073-domain-containing-protein
MGRGRQKAKQTKVARKLKYFSPDTDLDALQRELASSESHSYEEYEVENPEEDEDLYSKYADFAQEEPEDDSPELDEEFWISPKK
>NZ_CP040505.1|WP_005962471.1|115257_115560_-|DUF3618-domain-containing-protein
MSTDNLERTEDQIRAELEAVREQMTQTVDELFGRVQPDYIVGQAKDNARAKFDELKSFAAQTVDDAKDGDSEALKRVGYVAAGVAAFVGLVVVKIVRSRH
>NZ_CP040505.1|WP_040313566.1|115556_116012_-|phage-holin-family-protein
MTTPIEPPSTTQRTQRAATWSTEPQRPASMGELFSALSTQVTTLVNGEIELNKLKVKNFAKKFGAGGALLALAAVFALYLLAWVFHTIELAIAVALPAWAASLITTVILLLIVAVLAAVGASLLGKSQADVPDPKDGLTRDIDALKKGLGK

Crispr_ID: NZ_CP040505_6

• CRISPR_ID: NZ_CP040505_6
• CRISPR_location: 165831-165936
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP040505_6

Consensus_repeat	Method
CGCAAGCTGGTCTGATCGCATCGCAGACGGG	CRISPRCasFinder

spacers of NZ_CP040505_6

>6.1|165862|44|NZ_CP040505|CRISPRCasFinder
CTGTGGGGCCTGCGGGCGAGGGGCCCATGAGCCCAGGGCATGGT

CRISPR arrays and Neighbor proteins around NZ_CP040505_6

CRISPR arrays

The CRISPR arrays of NZ_CP040505_6

>merge|NZ_CP040505|6|165831-165936|CRISPRCasFinder
CGCAAGCTGGTCTGATCGCATCGCAGACGGGCTGTGGGGCCTGCGGGCGAGGGGCCCATGAGCCCAGGGCATGGTCGCAAGCTGGTCTGATCGCATCGCAGACGGG

>NZ_CP040505|6|6|165831-165936|CRISPRCasFinder
CGCAAGCTGGTCTGATCGCATCGCAGACGGG	CTGTGGGGCCTGCGGGCGAGGGGCCCATGAGCCCAGGGCATGGT
CGCAAGCTGGTCTGATCGCATCGCAGACGGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005962420.1|176011_177778_-|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|227321
NZ_CP040505.1|WP_005962431.1|160633_161479_-|aldo/keto-reductase	unknown	unknown	gnl|CDD|381297
NZ_CP040505.1|WP_005962432.1|160103_160514_-|ACT-domain-containing-protein	unknown	unknown	gnl|CDD|226130
NZ_CP040505.1|WP_005962434.1|157443_158568_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962424.1|169637_171206_+|hypothetical-protein	unknown	unknown	gnl|CDD|225532
NZ_CP040505.1|WP_040313560.1|172887_174186_-|M18-family-aminopeptidase	unknown	unknown	gnl|CDD|235073
NZ_CP040505.1|WP_005962433.1|158602_159922_-|DUF4921-family-protein	unknown	unknown	gnl|CDD|379815
NZ_CP040505.1|WP_005962429.1|163934_165674_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224055
NZ_CP040505.1|WP_005962436.1|156542_156908_+|hypothetical-protein	unknown	unknown	gnl|CDD|380033
NZ_CP040505.1|WP_040313561.1|168439_169372_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962428.1|166120_166852_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962435.1|157017_157281_-|DUF4235-domain-containing-protein	unknown	unknown	gnl|CDD|379422
NZ_CP040505.1|WP_005962427.1|166903_167476_+|PadR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|367559
NZ_CP040505.1|WP_138588784.1|161775_162939_-|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|213221
NZ_CP040505.1|WP_005962437.1|156250_156520_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_040313559.1|177801_178842_-|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|223687
NZ_CP040505.1|WP_005962438.1|155267_156221_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962426.1|167903_168413_-|heat-shock-protein-15	unknown	unknown	gnl|CDD|224109
NZ_CP040505.1|WP_005962421.1|174281_176015_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224055
NZ_CP040505.1|WP_005962423.1|172030_172570_+|NUDIX-domain-containing-protein	unknown	unknown	gnl|CDD|240032

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005962431.1|160633_161479_-|aldo/keto-reductase	gnl|CDD|381297	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. The family includes AKR1A/B/C/D/E/G/I, AKR2A/B/C/D/E, AKR3A/B/C/D/E/G, AKR4A/B/C, AKR5A/B/C/D/E/F/G/H, and similar proteins.	5.09232e-114
NZ_CP040505.1|WP_005962432.1|160103_160514_-|ACT-domain-containing-protein	gnl|CDD|226130	COG3602, COG3602, Uncharacterized protein conserved in bacteria [Function unknown].	2.23323e-22
NZ_CP040505.1|WP_005962424.1|169637_171206_+|hypothetical-protein	gnl|CDD|225532	COG2985, COG2985, Predicted permease [General function prediction only].	1.2311e-89
NZ_CP040505.1|WP_005962433.1|158602_159922_-|DUF4921-family-protein	gnl|CDD|379815	pfam16268, DUF4921, Domain of unknown function (DUF4921). This family consists of uncharacterized proteins around 450 residues in length and is mainly found in various Corynebacterium species. Several proteins are predicted as galactose-1-phosphate uridylytransferases. The function of this family is unknown.	0
NZ_CP040505.1|WP_005962429.1|163934_165674_-|ABC-transporter-ATP-binding-protein	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	9.01389e-141
NZ_CP040505.1|WP_005962436.1|156542_156908_+|hypothetical-protein	gnl|CDD|380033	pfam17844, SCP_3, Bacterial SCP ortholog. This domain is found in MSMEG_5817 gene product from M. smegmatis. It has been shown to be vital for mycobacterial survival within host macrophages. Crystal structure revealed a Rossmann-like fold alpha/beta two-layer sandwich forming a highly hydrophobic interface cavity and with high structural homology to the SCP family. Hence, it has been suggested that this domain may be involved in the interaction of apolar ligands through its hydrophobic cavity. Alanine-scanning mutagenesis of the hydrophobic cavity of MSMEG_5817 protein demonstrated that the conserved Val82 residue plays an important role in ligand binding.	5.0231e-44
NZ_CP040505.1|WP_040313559.1|177801_178842_-|ABC-transporter-substrate-binding-protein	gnl|CDD|223687	COG0614, FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism].	1.82477e-32
NZ_CP040505.1|WP_005962435.1|157017_157281_-|DUF4235-domain-containing-protein	gnl|CDD|379422	pfam14019, DUF4235, Protein of unknown function (DUF4235). This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 88 and 119 amino acids in length.	1.25749e-08
NZ_CP040505.1|WP_005962427.1|166903_167476_+|PadR-family-transcriptional-regulator	gnl|CDD|367559	pfam03551, PadR, Transcriptional regulator PadR-like family. Members of this family are transcriptional regulators that appear to be related to the pfam01047 family. This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.	2.23487e-12
NZ_CP040505.1|WP_138588784.1|161775_162939_-|ATP-binding-cassette-domain-containing-protein	gnl|CDD|213221	cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C. Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	2.58682e-116
NZ_CP040505.1|WP_040313560.1|172887_174186_-|M18-family-aminopeptidase	gnl|CDD|235073	PRK02813, PRK02813, putative aminopeptidase 2; Provisional.	0
NZ_CP040505.1|WP_005962420.1|176011_177778_-|ATP-binding-cassette-domain-containing-protein	gnl|CDD|227321	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	2.47811e-96
NZ_CP040505.1|WP_005962426.1|167903_168413_-|heat-shock-protein-15	gnl|CDD|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	3.22919e-20
NZ_CP040505.1|WP_005962421.1|174281_176015_-|ABC-transporter-ATP-binding-protein	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.65363e-105
NZ_CP040505.1|WP_005962423.1|172030_172570_+|NUDIX-domain-containing-protein	gnl|CDD|240032	cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.63841e-26

Protein sequences

>NZ_CP040505.1|WP_005962429.1|163934_165674_-|ABC-transporter-ATP-binding-protein
MLFSLASRHLKARVWEVLAVVVLQTAATIASLELPDLNARIIDEGVAQGNTGLIWHFGAQMLAIAFAQMLCTALAIYLGARLAMSLGAHLRSDIFTKIHGFSTQDYHSFGASSLITRSTNDIQQIQTTVMLTFSIMIGAPIMGVGGVIMALRQDVKLSAVLLVLVPLLTVIIALVMRRLSPLFHVQQTRIDNMNTALREELAGIRVIRAFIRQDFIRERYTEANDQLRRVALSIGSWFAFLFPAVMVVISISTVGVLWLASILIDSNELQIGSMIAYINYVGMISGAVMMAAMIFIMVPRANVAARRITEVLDHEATVKEADAPAALPSGAWTFTFEGAAFRYPGAEEAVLEDLNLTLRPGTTTAIIGATASGKTTLVNLLPRMIDPTGGRLAVNGQDLKDLPLSELRSRIAMVPQKAYLFSGTIASTVSGVENPDAAQRARVELALEGAQAKEFVSALPNGIDHEVEPGGANFSGGQRQRLAIARALYRAAELYVFDDSFSALDYATDAKLRLGLNTYTNGAAILIVGQRVASIRHADEILVLEDGRIIGRGTHAELLSSCETYKEIVASQMKEEEAA
>NZ_CP040505.1|WP_138588784.1|161775_162939_-|ATP-binding-cassette-domain-containing-protein
MVAKGSMSLGDVQAFIQYSRQLNQPIGQLAQMMNSLQSGVASAERVFEFLDAQEMAPDRGAKSLAEARKATGAVAVAAELTESAGRADGVNNAESAESAELTQGTLRAEGESLAKGRALHAGSILDEGDSGAGEEEHVSGRVVFDHVRFSYVEGTPIIQDLSLEVDPGQMVAIIGPTGAGKTTLVNLLMRFYELDSGRITLDGVDISTLDKDVLRAHMGMVLQDTWLFEGTIEENIAFGSDDASSEEVVDAAKQTAADRLIRHLPEGYETHVSDSADVISQGERQLLTIARAFVSRPDILILDEATSSVDTRTEVLVQKAMDRLREGRTAFVIAHRLSTIRDADVILVMEQGDVVEMGRHEELLAAGGAYARLYNAQFAGPTEASTI
>NZ_CP040505.1|WP_005962431.1|160633_161479_-|aldo/keto-reductase
MSPQIPNLVLSNGKAMPQFGFGTFKISPEDTFDAVSSALELGYRHIDTAQMYGNEVEVGRAIVESGIPREQIFLTSKLNNRNHEPQAARDSFKQSLEDLQSDYVDLFLVHWPLPGLYEGNVALPWPVLEEFYDLGQAQAIGLSNYQASHIDEVLKVASVSPHVLQIEANPYLPNNALRDYARSLGMTIEAWSPLARGRATCDPILAKIGAAHAKSAAQVALAWALQRGDAVFPKSLDPARQLENREAVGLELSTEECALISSLDEGEAGRTGSHPDTMNRL
>NZ_CP040505.1|WP_005962432.1|160103_160514_-|ACT-domain-containing-protein
MSDPQALDQMLATLSPTPQGEYVFALVDEVPAGTHPFAVIRDDDMLTVVLEKSEAEAVGLPVDKTYAHLSLGLQADLDSIGVTATIAQILSARSIVANPIACARHDHFFVQADRAAEAAQLLIELGKNARGWLPHN
>NZ_CP040505.1|WP_005962433.1|158602_159922_-|DUF4921-family-protein
MAKELSRTDRAIMRLADGTVKQHNLLTGTEVWTVPGRGNRPLSVPHPDPLPIDHSRDGHHCAFCDARYLETPPEKSRLVIDEDGSWREIAGLPAERLSQQVAEFRRIPNLFEIVSYNYWHLNHGHIPSESEHRRMAEYLASPEGYEHIMRVVRARMLASGVSAEEFEAMGDSQKLQQANGFFSGGHDLIVARRHYVDGAMDTTALAGSGTLTPEEHYQYTAFTARTMNELYGLDEHVRYVATFQNWLKPAGASFDHLHKQLVAIDDFSVQTEAELNRLRSQPGIYDEILKVAATRKLLIAQNEHAIAMAGFGHRFPGVAIWPLYSPKNPWELSEEQMRSVSDLLHAMHAATGVDVPCNEEWYHRPPSVRTPMRFRILLKWRISTLAGFEGGTRIYLNTIDPWNVVDKLVPRLLEMREAGTIAPMKIGKECRVSPEMLSD
>NZ_CP040505.1|WP_005962434.1|157443_158568_+|hypothetical-protein
MESTRRPIMIGAGLAACILLAACTPAVSPSYESVDPFDKPIEPNGMGAQASQSASEGSLGAPEPLKGSGSVKLAVMEGQRLPASVEEAFHTYTGFTLEQKEVASASHILGLGVDAVIGLGANDLFEAGSALGTTPALDLVPEGTGVEGVASELAYGRDDVCVLADRGWMSANRRSMPSGIEMLASTDHAQLLAFPDPDHFSPSALFIAGARAKLGEGMGQWAFDMRAGGALIASQEEANSSWTALEPPQSDAQPSRPLMIAPMSAIMRSTTNTGVEAAAQALDASCVQRYLYAAPAADAANEKGATSFMTWLLTWSGQHALAEAGVAYPLDPQAVENTPAHWFLTPKSDALILDETAIKNTGDALAQWDAASNG
>NZ_CP040505.1|WP_005962435.1|157017_157281_-|DUF4235-domain-containing-protein
MEDLGWKLASAGVMAVSALAAGKIVEVAWKAATGRDVPREDDDEAALISLIVFAAASAAIGAVAERYAFRAAKKMNSRRLRESRNWG
>NZ_CP040505.1|WP_005962436.1|156542_156908_+|hypothetical-protein
MSKRRISSEEGLLALRTWAREGEDTERALMLTAVRFSLEELGALHPGRAVEVRVPPAGAVQILPGTTHRRGTPPAVVETSMQVWLSLVTGCLSWEDAISDGRIQASGERTDLAPFFPYLSL
>NZ_CP040505.1|WP_005962437.1|156250_156520_-|hypothetical-protein
MMEDEYRGSRIAEEGFHLADSKHGSAASSPEVPPPVLFFQKGPTTRRNQLRNTTSLVQRLLVKHNAGEAEDLHSPPRSADFSSIRVFSW
>NZ_CP040505.1|WP_005962438.1|155267_156221_-|hypothetical-protein
MKKADHLQTKCDLRPWERFLVSGSVLDTPEARNGNWDPEVLKEVSGVDRIGSLAVRHTAYIEALDEFAQEASPDVLRPNSWGIAFGHRLKEALEHRCTLWLSVVSADSLDTLEDFIGSELIRIAGPMRADQKIPIALNPVALVTAWSENPEKAHYLRHVLRNADTLRASHRAIAALRRAQVRIRERSRLARLIIDPRFVAYFVVFVYSSLRALPVVLVPGFHGRVWVLWLIDIITAIPYTWGLLALVAGRTFFTRFAGLIVTIVTFVSPYVYFWMHGKNYPPGVTAFVVAMIVGAIALEGIRWLRDRLVARGLREGR
>NZ_CP040505.1|WP_005962428.1|166120_166852_+|hypothetical-protein
MNEPTTQPKAERAGEDESTPRTPKARTTAFTDAQIEAGFWLLASRAHPSALELDETRTDETLFDTLKPLIGKNNLTRDKVKKAIAPILAAKEAAAAGKLPQLSAARADEVRKLILKEWRISSSKGALLWPTGSRTIAVRLGKGKWNDALARLGLRASGRGRAQGSGRFNEAVMRTILTEFLETTETTGLSATLGGYTSWSKEQRALGRQDVPSTASVRQRFGTWGKAMEFASRTEEDSGQGLG
>NZ_CP040505.1|WP_005962427.1|166903_167476_+|PadR-family-transcriptional-regulator
MSVRNALLALVSLQPAGVYRLKQMFEDQTCGAWPLNIGQVYQTMQRLERTGCVTSHQETNAGRDSEVFEITDAGRAILDEWWSTPVTREQPERDELVMKLAVAAADPSVDVASLIQMQRRATRAVLREATRMNESADDGELAWKLILESHIFELEAESKWLNHIETGAISQASRRADFAASKRRPRRDTA
>NZ_CP040505.1|WP_005962426.1|167903_168413_-|heat-shock-protein-15
MSASSSQPPVSPPNTTEEVDIPRGALADGDSVRVDTWLWAVRKMKSRSQATSAARAGHVKVNGDSAKAAQKIRVGDEVRLRIEGFDQVLLVRKLLVKRVGAPQARVCYEDRTPARPKMVVPIAIRERGAGRPSKKERRELDRLRGRDSHERARLERASATWDREAVLED
>NZ_CP040505.1|WP_040313561.1|168439_169372_-|hypothetical-protein
MLSSAIGTIEPTQDRIDELHRIFDDIRAAPDAHRIDLHGSYPSGCMDGRPFMLKAEDSPSGKPEPAPARVRVPGGSLTTWVADLLLVGAFRPEGFTGWDEGEDPLPADVPEQCEAWISNLFSTLRKSGIEVCVHSSETVGEDDFGCGAMDGLKTALRLMIDSREAVEALMRSWGLDPAELPAAALARAERLRTVLPPGARLGQACTPWVSAPIPLAMGEHRELVLVVNAQPGTSVNSDGLVDVLGGQAFVIDIWSFEAIAQTLMEAATKRGSATTATRDGIVAVLAAFSASALLALCGPNIEVVLLPARS
>NZ_CP040505.1|WP_005962424.1|169637_171206_+|hypothetical-protein
MAELLETNHLLAFFLVVGAGAALGAIRFGPLRFGAAGALFVGLAVSAWDPNIGNDMKIVQQIGLAFFVYTVGISAGAMFFQDLRKQTSLLTSAAIVSLLGALAAALGGHLLHLPKGLTLGIFTGSLTAAPALDAATRVTGDPQAAVGYAFGYPIGVIVGILVVTMTVTRKWVGVKDTPSLAGKSLETLTVRVTETVNTRHVRAWREQRVRMSYLRRGDITRVVVPGEDLEEGDFILLVGDPENIEEAASQVGVAVDHHLEDDRSDVAFERIVVSNPDVAGRSISALNVSTRFGAVITRVRRGDLDLLARDDLDLQLGDHVAVVVPTEELENIQNWLGDSEKRVSEVDAMAFGIGMVLGMLLGALPFPIPGGATFELGSAAGPLIVGMLLGALRRTGPLVWSLPTSANLTIRQIGLLLFLAGLGLGAGPQLSALLTSPEGPKAALLAFFLVLLCCVAQALAGRFAGLSAARSAGGVAGFLGQPAVLQAADARVADERIEAAYATLFAFTIIVKILLVPLIWSI
>NZ_CP040505.1|WP_005962423.1|172030_172570_+|NUDIX-domain-containing-protein
MTTPDFVLELRKKIGHAELWLPGTTAIVVRALDPDSGEATIPPHGWSRMIHDCTAVEVLCVKRADTGAWTPVTGIVDPREEPAIAAVRETEEEAAVSARVDRLISVDVVGPITYENGDVSSYLDTAFVLEWNEGEPEPRDGENTEAVFLRANALPKMNKRFQRLIAKALSGSVIADFED
>NZ_CP040505.1|WP_040313560.1|172887_174186_-|M18-family-aminopeptidase
MGYFEYDETTQHAIDYQHFLLDSPSAFHAADLVRQRLEDAGFTPQNEKDPWDASPGGHVMLRSGAVVAWVVPETLTEDAGFRIVGAHTDSPAFRVKPSMSSTSPDGFKQIDVEVYGGMLWNSWLDRELAIAGRLLMRDGSQVLVRTGALARIPQLAIHLDRTVNPEGLKLDPQQHLHPIWSLDSDADLMEEIAKYAGVKAEDIVSHDLVLVPQQGPGTFGDRGQFFAAGQQDNLSSVHSGLTALERLAAKGMPKEGDVLVFIAFNHEEIGSETRSGAAGPLLASVLERTGAALGRDLDARHRMLAQSSCVSADAAHSVHPNYAERHDPHNRPVMGRGPIVKINANQRYATDAEGIALWLRACEAAGVASQSFVSHNAMPCGSTIGPITATGLGILTVDVGIGLLSMHSAREMSHVDDLIALSKALEAYWLGA
>NZ_CP040505.1|WP_005962421.1|174281_176015_-|ABC-transporter-ATP-binding-protein
MKQTFTDLVSIMGRLGEFKRLLIGSVLVIALHQIALILVSVVSVWITTRLVSEDHPQLFLPFLVLFSLAIVHALCYLYDAWWSHQLAYQILARMRIDLYAAIQRIAPRGLSGRRTGDLTATAMNDMEQLEWFYAHTAPVAVAVLINTIIIESVLIALIGPLVLLVLISMVLPILMPWLLAPIQRKQGERVRAGLSSLKSLGLDSVVGARELYALGQREEHTRRVLEMSALVQRDKLAQATRKSIESAGSAFGAAAVSIAILAVLTGRVIEGTYPAQLLPVAIVLIGMATLPVLSLAGMLGIMGEVSSCAHRVNEILDAPDPLPSTVLDLPFVEGEKDAAVGESVTYRYEGEAALKEATLSVPGGRTVALVGPSGAGKSTFAHLLMRFMDPDSGSVRFSGHDLRGIDPDEHRLEVALVPQNGHVFSGTFRSNLLLADWNADDTMMWEALNAAGLEDLVKSLGGLDAPVGDRGTALSGGERQRVVLARAFLRQPRLLILDEPSANLDPELEREITESATRLRQGRTTLVISHRLASLADAESIWVLDSGRVVAHGSHETLKRDSADYRRILADQSDAES
>NZ_CP040505.1|WP_005962420.1|176011_177778_-|ATP-binding-cassette-domain-containing-protein
MSIRTVGERQRAVFEAAGVSPAVLIPPILAGLAASTALVGSALVNSMIFTELLGKRNPSALTRWIAVLALLLILIPLLGLLRAYIANRLGLLLKVNLRRRILADIDERGPMRLSSSRAGALESLMVDGVEAIEPYFGSYLPQIAVTALTAGPLCIWIGTVSPAIGTVLFLCAIATFLVPRLWDRALAEEGQAHWGAYEDLNSDFVDAMMGMTTLKSFGASQAYGHKLAERSKELLRTTLSQLRISLGETGASAAVMVLGPAIALLIAAFELHHGLYGVDRLFFITLLSIEVFRPLRDLANAFHAGYFGLSAATQIHEVFHGNAPARITSERRALPAGNTADIEAHAVSYTYEGADAPALSNASLRIPQGRFLAIIGGSGSGKSTLIGMILGLDSPTAGRVTIGGEPATSVDIPSTISLVPQSPVIFPGTVEKILAAAAPSTTREEMLEALTLARAYGLHDNRDSCVHHGSGAQGEDLDLFIEEGGANLSGGQRQRLAIARALVRRPRVLILDESTSALDSNTEAQILSGLRKTYPEMTLVLVTHRMEVAASADEIVRLCGGEIHSSGAPAEVIGVSSQPVPSQGIEKR
>NZ_CP040505.1|WP_040313559.1|177801_178842_-|ABC-transporter-substrate-binding-protein
MTLRPLFLTAATCAALVLAGCSTDTGAAQEHSTPASPSSNGTYPMKASFCGQEVTVKHEPQRIIGAGREGVANIVSAGAADKMVARFGEHGAQYGPRIENELNKLTGIEEVVSAGGEEHGSISFERILELRPDMIYGSALGDGDLSIDNLEANGISAVMPPSSCAYAFADATSNFADLDAIPAHVRELGALLNTAEKADTNASTMETDLAEARAEGKKLPELTVAGLYYWDSSEDLFAYGANSTIQGIFDTAHLKNVVAPTYDAMFNGAISPEAIVKSNPDVLIVTTGEGGITLEDSLARLEKIPGMTETAAFKNKRIIELPSGAAYPTVEAIDAARELVKTLAEQ

Crispr_ID: NZ_CP040505_7

• CRISPR_ID: NZ_CP040505_7
• CRISPR_location: 169416-169503
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP040505_7

Consensus_repeat	Method
AGCGGCCCTCGGGCTCGCGCAGAAAGC	CRISPRCasFinder

spacers of NZ_CP040505_7

>7.1|169443|34|NZ_CP040505|CRISPRCasFinder
CACGGGAGGACGCGCGGCCCCTCGCCGCTCAGCT

CRISPR arrays and Neighbor proteins around NZ_CP040505_7

CRISPR arrays

The CRISPR arrays of NZ_CP040505_7

>merge|NZ_CP040505|7|169416-169503|CRISPRCasFinder
AGCGGCCCTCGGGCTCGCGCAGAAAGCCACGGGAGGACGCGCGGCCCCTCGCCGCTCAGCTAGCGGCCCTCGGGCGCGCGCAGAAAGC

>NZ_CP040505|7|7|169416-169503|CRISPRCasFinder
AGCGGCCCTCGGGCTCGCGCAGAAAGC	CACGGGAGGACGCGCGGCCCCTCGCCGCTCAGCT
AGCGGCCCTCGGGCGCGCGCAGAAAGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005962431.1|160633_161479_-|aldo/keto-reductase	unknown	unknown	gnl|CDD|381297
NZ_CP040505.1|WP_005962432.1|160103_160514_-|ACT-domain-containing-protein	unknown	unknown	gnl|CDD|226130
NZ_CP040505.1|WP_005962434.1|157443_158568_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962424.1|169637_171206_+|hypothetical-protein	unknown	unknown	gnl|CDD|225532
NZ_CP040505.1|WP_005962414.1|183306_183756_-|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|366181
NZ_CP040505.1|WP_005962429.1|163934_165674_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224055
NZ_CP040505.1|WP_005962433.1|158602_159922_-|DUF4921-family-protein	unknown	unknown	gnl|CDD|379815
NZ_CP040505.1|WP_005962421.1|174281_176015_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224055
NZ_CP040505.1|WP_005962428.1|166120_166852_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962418.1|178854_179634_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224045
NZ_CP040505.1|WP_040313561.1|168439_169372_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_138588784.1|161775_162939_-|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|213221
NZ_CP040505.1|WP_040313560.1|172887_174186_-|M18-family-aminopeptidase	unknown	unknown	gnl|CDD|235073
NZ_CP040505.1|WP_083879450.1|179630_180815_-|iron-ABC-transporter-permease	unknown	unknown	gnl|CDD|376439
NZ_CP040505.1|WP_040313559.1|177801_178842_-|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|223687
NZ_CP040505.1|WP_005962420.1|176011_177778_-|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|227321
NZ_CP040505.1|WP_005962416.1|180735_182850_-|SagD-family-bacteriocin-biosynthesis-docking-scaffold-protein	unknown	unknown	gnl|CDD|274674
NZ_CP040505.1|WP_005962426.1|167903_168413_-|heat-shock-protein-15	unknown	unknown	gnl|CDD|224109
NZ_CP040505.1|WP_005962427.1|166903_167476_+|PadR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|367559
NZ_CP040505.1|WP_005962423.1|172030_172570_+|NUDIX-domain-containing-protein	unknown	unknown	gnl|CDD|240032

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005962431.1|160633_161479_-|aldo/keto-reductase	gnl|CDD|381297	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. The family includes AKR1A/B/C/D/E/G/I, AKR2A/B/C/D/E, AKR3A/B/C/D/E/G, AKR4A/B/C, AKR5A/B/C/D/E/F/G/H, and similar proteins.	5.09232e-114
NZ_CP040505.1|WP_005962427.1|166903_167476_+|PadR-family-transcriptional-regulator	gnl|CDD|367559	pfam03551, PadR, Transcriptional regulator PadR-like family. Members of this family are transcriptional regulators that appear to be related to the pfam01047 family. This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.	2.23487e-12
NZ_CP040505.1|WP_005962424.1|169637_171206_+|hypothetical-protein	gnl|CDD|225532	COG2985, COG2985, Predicted permease [General function prediction only].	1.2311e-89
NZ_CP040505.1|WP_005962414.1|183306_183756_-|GNAT-family-N-acetyltransferase	gnl|CDD|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.09433e-14
NZ_CP040505.1|WP_005962429.1|163934_165674_-|ABC-transporter-ATP-binding-protein	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	9.01389e-141
NZ_CP040505.1|WP_005962433.1|158602_159922_-|DUF4921-family-protein	gnl|CDD|379815	pfam16268, DUF4921, Domain of unknown function (DUF4921). This family consists of uncharacterized proteins around 450 residues in length and is mainly found in various Corynebacterium species. Several proteins are predicted as galactose-1-phosphate uridylytransferases. The function of this family is unknown.	0
NZ_CP040505.1|WP_005962426.1|167903_168413_-|heat-shock-protein-15	gnl|CDD|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	3.22919e-20
NZ_CP040505.1|WP_005962418.1|178854_179634_-|ABC-transporter-ATP-binding-protein	gnl|CDD|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.3037e-101
NZ_CP040505.1|WP_005962432.1|160103_160514_-|ACT-domain-containing-protein	gnl|CDD|226130	COG3602, COG3602, Uncharacterized protein conserved in bacteria [Function unknown].	2.23323e-22
NZ_CP040505.1|WP_138588784.1|161775_162939_-|ATP-binding-cassette-domain-containing-protein	gnl|CDD|213221	cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C. Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	2.58682e-116
NZ_CP040505.1|WP_083879450.1|179630_180815_-|iron-ABC-transporter-permease	gnl|CDD|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	1.01849e-81
NZ_CP040505.1|WP_040313559.1|177801_178842_-|ABC-transporter-substrate-binding-protein	gnl|CDD|223687	COG0614, FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism].	1.82477e-32
NZ_CP040505.1|WP_005962420.1|176011_177778_-|ATP-binding-cassette-domain-containing-protein	gnl|CDD|227321	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	2.47811e-96
NZ_CP040505.1|WP_005962416.1|180735_182850_-|SagD-family-bacteriocin-biosynthesis-docking-scaffold-protein	gnl|CDD|274674	TIGR03604, hypothetical_protein, thiazole/oxazole-forming peptide maturase, SagD family component. Members of this protein family include enzymes related to SagD, previously referred to as a scaffold or docking protein involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). Newer evidence describes an enzymatic activity, an ATP-dependent cyclodehydration reaction, previously ascribed to the SagC component. This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins.	3.80441e-74
NZ_CP040505.1|WP_040313560.1|172887_174186_-|M18-family-aminopeptidase	gnl|CDD|235073	PRK02813, PRK02813, putative aminopeptidase 2; Provisional.	0
NZ_CP040505.1|WP_005962421.1|174281_176015_-|ABC-transporter-ATP-binding-protein	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.65363e-105
NZ_CP040505.1|WP_005962423.1|172030_172570_+|NUDIX-domain-containing-protein	gnl|CDD|240032	cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.63841e-26

Protein sequences

>NZ_CP040505.1|WP_040313561.1|168439_169372_-|hypothetical-protein
MLSSAIGTIEPTQDRIDELHRIFDDIRAAPDAHRIDLHGSYPSGCMDGRPFMLKAEDSPSGKPEPAPARVRVPGGSLTTWVADLLLVGAFRPEGFTGWDEGEDPLPADVPEQCEAWISNLFSTLRKSGIEVCVHSSETVGEDDFGCGAMDGLKTALRLMIDSREAVEALMRSWGLDPAELPAAALARAERLRTVLPPGARLGQACTPWVSAPIPLAMGEHRELVLVVNAQPGTSVNSDGLVDVLGGQAFVIDIWSFEAIAQTLMEAATKRGSATTATRDGIVAVLAAFSASALLALCGPNIEVVLLPARS
>NZ_CP040505.1|WP_005962426.1|167903_168413_-|heat-shock-protein-15
MSASSSQPPVSPPNTTEEVDIPRGALADGDSVRVDTWLWAVRKMKSRSQATSAARAGHVKVNGDSAKAAQKIRVGDEVRLRIEGFDQVLLVRKLLVKRVGAPQARVCYEDRTPARPKMVVPIAIRERGAGRPSKKERRELDRLRGRDSHERARLERASATWDREAVLED
>NZ_CP040505.1|WP_005962427.1|166903_167476_+|PadR-family-transcriptional-regulator
MSVRNALLALVSLQPAGVYRLKQMFEDQTCGAWPLNIGQVYQTMQRLERTGCVTSHQETNAGRDSEVFEITDAGRAILDEWWSTPVTREQPERDELVMKLAVAAADPSVDVASLIQMQRRATRAVLREATRMNESADDGELAWKLILESHIFELEAESKWLNHIETGAISQASRRADFAASKRRPRRDTA
>NZ_CP040505.1|WP_005962428.1|166120_166852_+|hypothetical-protein
MNEPTTQPKAERAGEDESTPRTPKARTTAFTDAQIEAGFWLLASRAHPSALELDETRTDETLFDTLKPLIGKNNLTRDKVKKAIAPILAAKEAAAAGKLPQLSAARADEVRKLILKEWRISSSKGALLWPTGSRTIAVRLGKGKWNDALARLGLRASGRGRAQGSGRFNEAVMRTILTEFLETTETTGLSATLGGYTSWSKEQRALGRQDVPSTASVRQRFGTWGKAMEFASRTEEDSGQGLG
>NZ_CP040505.1|WP_005962429.1|163934_165674_-|ABC-transporter-ATP-binding-protein
MLFSLASRHLKARVWEVLAVVVLQTAATIASLELPDLNARIIDEGVAQGNTGLIWHFGAQMLAIAFAQMLCTALAIYLGARLAMSLGAHLRSDIFTKIHGFSTQDYHSFGASSLITRSTNDIQQIQTTVMLTFSIMIGAPIMGVGGVIMALRQDVKLSAVLLVLVPLLTVIIALVMRRLSPLFHVQQTRIDNMNTALREELAGIRVIRAFIRQDFIRERYTEANDQLRRVALSIGSWFAFLFPAVMVVISISTVGVLWLASILIDSNELQIGSMIAYINYVGMISGAVMMAAMIFIMVPRANVAARRITEVLDHEATVKEADAPAALPSGAWTFTFEGAAFRYPGAEEAVLEDLNLTLRPGTTTAIIGATASGKTTLVNLLPRMIDPTGGRLAVNGQDLKDLPLSELRSRIAMVPQKAYLFSGTIASTVSGVENPDAAQRARVELALEGAQAKEFVSALPNGIDHEVEPGGANFSGGQRQRLAIARALYRAAELYVFDDSFSALDYATDAKLRLGLNTYTNGAAILIVGQRVASIRHADEILVLEDGRIIGRGTHAELLSSCETYKEIVASQMKEEEAA
>NZ_CP040505.1|WP_138588784.1|161775_162939_-|ATP-binding-cassette-domain-containing-protein
MVAKGSMSLGDVQAFIQYSRQLNQPIGQLAQMMNSLQSGVASAERVFEFLDAQEMAPDRGAKSLAEARKATGAVAVAAELTESAGRADGVNNAESAESAELTQGTLRAEGESLAKGRALHAGSILDEGDSGAGEEEHVSGRVVFDHVRFSYVEGTPIIQDLSLEVDPGQMVAIIGPTGAGKTTLVNLLMRFYELDSGRITLDGVDISTLDKDVLRAHMGMVLQDTWLFEGTIEENIAFGSDDASSEEVVDAAKQTAADRLIRHLPEGYETHVSDSADVISQGERQLLTIARAFVSRPDILILDEATSSVDTRTEVLVQKAMDRLREGRTAFVIAHRLSTIRDADVILVMEQGDVVEMGRHEELLAAGGAYARLYNAQFAGPTEASTI
>NZ_CP040505.1|WP_005962431.1|160633_161479_-|aldo/keto-reductase
MSPQIPNLVLSNGKAMPQFGFGTFKISPEDTFDAVSSALELGYRHIDTAQMYGNEVEVGRAIVESGIPREQIFLTSKLNNRNHEPQAARDSFKQSLEDLQSDYVDLFLVHWPLPGLYEGNVALPWPVLEEFYDLGQAQAIGLSNYQASHIDEVLKVASVSPHVLQIEANPYLPNNALRDYARSLGMTIEAWSPLARGRATCDPILAKIGAAHAKSAAQVALAWALQRGDAVFPKSLDPARQLENREAVGLELSTEECALISSLDEGEAGRTGSHPDTMNRL
>NZ_CP040505.1|WP_005962432.1|160103_160514_-|ACT-domain-containing-protein
MSDPQALDQMLATLSPTPQGEYVFALVDEVPAGTHPFAVIRDDDMLTVVLEKSEAEAVGLPVDKTYAHLSLGLQADLDSIGVTATIAQILSARSIVANPIACARHDHFFVQADRAAEAAQLLIELGKNARGWLPHN
>NZ_CP040505.1|WP_005962433.1|158602_159922_-|DUF4921-family-protein
MAKELSRTDRAIMRLADGTVKQHNLLTGTEVWTVPGRGNRPLSVPHPDPLPIDHSRDGHHCAFCDARYLETPPEKSRLVIDEDGSWREIAGLPAERLSQQVAEFRRIPNLFEIVSYNYWHLNHGHIPSESEHRRMAEYLASPEGYEHIMRVVRARMLASGVSAEEFEAMGDSQKLQQANGFFSGGHDLIVARRHYVDGAMDTTALAGSGTLTPEEHYQYTAFTARTMNELYGLDEHVRYVATFQNWLKPAGASFDHLHKQLVAIDDFSVQTEAELNRLRSQPGIYDEILKVAATRKLLIAQNEHAIAMAGFGHRFPGVAIWPLYSPKNPWELSEEQMRSVSDLLHAMHAATGVDVPCNEEWYHRPPSVRTPMRFRILLKWRISTLAGFEGGTRIYLNTIDPWNVVDKLVPRLLEMREAGTIAPMKIGKECRVSPEMLSD
>NZ_CP040505.1|WP_005962434.1|157443_158568_+|hypothetical-protein
MESTRRPIMIGAGLAACILLAACTPAVSPSYESVDPFDKPIEPNGMGAQASQSASEGSLGAPEPLKGSGSVKLAVMEGQRLPASVEEAFHTYTGFTLEQKEVASASHILGLGVDAVIGLGANDLFEAGSALGTTPALDLVPEGTGVEGVASELAYGRDDVCVLADRGWMSANRRSMPSGIEMLASTDHAQLLAFPDPDHFSPSALFIAGARAKLGEGMGQWAFDMRAGGALIASQEEANSSWTALEPPQSDAQPSRPLMIAPMSAIMRSTTNTGVEAAAQALDASCVQRYLYAAPAADAANEKGATSFMTWLLTWSGQHALAEAGVAYPLDPQAVENTPAHWFLTPKSDALILDETAIKNTGDALAQWDAASNG
>NZ_CP040505.1|WP_005962424.1|169637_171206_+|hypothetical-protein
MAELLETNHLLAFFLVVGAGAALGAIRFGPLRFGAAGALFVGLAVSAWDPNIGNDMKIVQQIGLAFFVYTVGISAGAMFFQDLRKQTSLLTSAAIVSLLGALAAALGGHLLHLPKGLTLGIFTGSLTAAPALDAATRVTGDPQAAVGYAFGYPIGVIVGILVVTMTVTRKWVGVKDTPSLAGKSLETLTVRVTETVNTRHVRAWREQRVRMSYLRRGDITRVVVPGEDLEEGDFILLVGDPENIEEAASQVGVAVDHHLEDDRSDVAFERIVVSNPDVAGRSISALNVSTRFGAVITRVRRGDLDLLARDDLDLQLGDHVAVVVPTEELENIQNWLGDSEKRVSEVDAMAFGIGMVLGMLLGALPFPIPGGATFELGSAAGPLIVGMLLGALRRTGPLVWSLPTSANLTIRQIGLLLFLAGLGLGAGPQLSALLTSPEGPKAALLAFFLVLLCCVAQALAGRFAGLSAARSAGGVAGFLGQPAVLQAADARVADERIEAAYATLFAFTIIVKILLVPLIWSI
>NZ_CP040505.1|WP_005962423.1|172030_172570_+|NUDIX-domain-containing-protein
MTTPDFVLELRKKIGHAELWLPGTTAIVVRALDPDSGEATIPPHGWSRMIHDCTAVEVLCVKRADTGAWTPVTGIVDPREEPAIAAVRETEEEAAVSARVDRLISVDVVGPITYENGDVSSYLDTAFVLEWNEGEPEPRDGENTEAVFLRANALPKMNKRFQRLIAKALSGSVIADFED
>NZ_CP040505.1|WP_040313560.1|172887_174186_-|M18-family-aminopeptidase
MGYFEYDETTQHAIDYQHFLLDSPSAFHAADLVRQRLEDAGFTPQNEKDPWDASPGGHVMLRSGAVVAWVVPETLTEDAGFRIVGAHTDSPAFRVKPSMSSTSPDGFKQIDVEVYGGMLWNSWLDRELAIAGRLLMRDGSQVLVRTGALARIPQLAIHLDRTVNPEGLKLDPQQHLHPIWSLDSDADLMEEIAKYAGVKAEDIVSHDLVLVPQQGPGTFGDRGQFFAAGQQDNLSSVHSGLTALERLAAKGMPKEGDVLVFIAFNHEEIGSETRSGAAGPLLASVLERTGAALGRDLDARHRMLAQSSCVSADAAHSVHPNYAERHDPHNRPVMGRGPIVKINANQRYATDAEGIALWLRACEAAGVASQSFVSHNAMPCGSTIGPITATGLGILTVDVGIGLLSMHSAREMSHVDDLIALSKALEAYWLGA
>NZ_CP040505.1|WP_005962421.1|174281_176015_-|ABC-transporter-ATP-binding-protein
MKQTFTDLVSIMGRLGEFKRLLIGSVLVIALHQIALILVSVVSVWITTRLVSEDHPQLFLPFLVLFSLAIVHALCYLYDAWWSHQLAYQILARMRIDLYAAIQRIAPRGLSGRRTGDLTATAMNDMEQLEWFYAHTAPVAVAVLINTIIIESVLIALIGPLVLLVLISMVLPILMPWLLAPIQRKQGERVRAGLSSLKSLGLDSVVGARELYALGQREEHTRRVLEMSALVQRDKLAQATRKSIESAGSAFGAAAVSIAILAVLTGRVIEGTYPAQLLPVAIVLIGMATLPVLSLAGMLGIMGEVSSCAHRVNEILDAPDPLPSTVLDLPFVEGEKDAAVGESVTYRYEGEAALKEATLSVPGGRTVALVGPSGAGKSTFAHLLMRFMDPDSGSVRFSGHDLRGIDPDEHRLEVALVPQNGHVFSGTFRSNLLLADWNADDTMMWEALNAAGLEDLVKSLGGLDAPVGDRGTALSGGERQRVVLARAFLRQPRLLILDEPSANLDPELEREITESATRLRQGRTTLVISHRLASLADAESIWVLDSGRVVAHGSHETLKRDSADYRRILADQSDAES
>NZ_CP040505.1|WP_005962420.1|176011_177778_-|ATP-binding-cassette-domain-containing-protein
MSIRTVGERQRAVFEAAGVSPAVLIPPILAGLAASTALVGSALVNSMIFTELLGKRNPSALTRWIAVLALLLILIPLLGLLRAYIANRLGLLLKVNLRRRILADIDERGPMRLSSSRAGALESLMVDGVEAIEPYFGSYLPQIAVTALTAGPLCIWIGTVSPAIGTVLFLCAIATFLVPRLWDRALAEEGQAHWGAYEDLNSDFVDAMMGMTTLKSFGASQAYGHKLAERSKELLRTTLSQLRISLGETGASAAVMVLGPAIALLIAAFELHHGLYGVDRLFFITLLSIEVFRPLRDLANAFHAGYFGLSAATQIHEVFHGNAPARITSERRALPAGNTADIEAHAVSYTYEGADAPALSNASLRIPQGRFLAIIGGSGSGKSTLIGMILGLDSPTAGRVTIGGEPATSVDIPSTISLVPQSPVIFPGTVEKILAAAAPSTTREEMLEALTLARAYGLHDNRDSCVHHGSGAQGEDLDLFIEEGGANLSGGQRQRLAIARALVRRPRVLILDESTSALDSNTEAQILSGLRKTYPEMTLVLVTHRMEVAASADEIVRLCGGEIHSSGAPAEVIGVSSQPVPSQGIEKR
>NZ_CP040505.1|WP_040313559.1|177801_178842_-|ABC-transporter-substrate-binding-protein
MTLRPLFLTAATCAALVLAGCSTDTGAAQEHSTPASPSSNGTYPMKASFCGQEVTVKHEPQRIIGAGREGVANIVSAGAADKMVARFGEHGAQYGPRIENELNKLTGIEEVVSAGGEEHGSISFERILELRPDMIYGSALGDGDLSIDNLEANGISAVMPPSSCAYAFADATSNFADLDAIPAHVRELGALLNTAEKADTNASTMETDLAEARAEGKKLPELTVAGLYYWDSSEDLFAYGANSTIQGIFDTAHLKNVVAPTYDAMFNGAISPEAIVKSNPDVLIVTTGEGGITLEDSLARLEKIPGMTETAAFKNKRIIELPSGAAYPTVEAIDAARELVKTLAEQ
>NZ_CP040505.1|WP_005962418.1|178854_179634_-|ABC-transporter-ATP-binding-protein
MTTTTPAFRIEDLKVKYGSALALNSINAEIPHGVVTGLVGPNGSGKTTLLRTMYGALTPAGGRVLLNGSPLDSLDPREISREISVVVQQSFIPHRMSVLDEVLLGRMPFISDFSPYREEDRKLALDALEAVGMLDKSERRSDELSGGERQRVVIARALAQGSRCILLDEPTNHLDIRYQHEVLELLRDLGRTVVIVLHDLNMAARYCDRIHILSAGRMHSVGAAEQVLLESTIAELYGVNVSRIDHCGKPQFLFTSPTR
>NZ_CP040505.1|WP_083879450.1|179630_180815_-|iron-ABC-transporter-permease
MPTTGWDCTTPRRAPTSSTDSPCLMPSSHPPTSSIGFTQGNTRLPRAARARNASINVGLVVLLIISMLLACSIGAVEVHPGITLRIVLEHLTPWQWTILPPPSPVDEGIIWSTRLPRTLVGAACGAGLAVTGLAAQSTLRNVLADPYILGISAGASTGAAAVMVFGLRMANSPVHVGVGVGAFIGSLVSLALVMTLARGAGRLTNTRVIFAGMAVNFFFSALTSLIIMLAKDPTTTRSVVFWMLGSLAGSHWPEVAIAMGASGAGILGLIAIGRRIDALSLGDDVARTLGVDPQRQRFLVFLLISLIVAFLVALTGTIGFIGLVVPHLAKRLHGGIFRRSAPACAVIGAIIIVLADLLARIAVAPGEMSIGVITSLLGAPLLMFLIGRDARNEE
>NZ_CP040505.1|WP_005962416.1|180735_182850_-|SagD-family-bacteriocin-biosynthesis-docking-scaffold-protein
MTKGSGKGLVQLWPSEKDSYARRADGTLIRGLRNDLEALAPCPDAALPLPSDPFSIVIDLTPNAHPALLADSPAPKSLLKACARKLTLKEFFEGEGPLPGDTVIHYLTSPDLPSVLKAEERALNAGASYLAILIRFPDLLIGPLSSPQFPNLYRHLEARITAASLAPGATSATLRPPALDLIRDHLKEFPDRLLDVKISPTRNEDAKSSLNWTTIDIPSARKRARVLVPWLTWRGYEHAPEIIDIHSEAFCDELAGIVTRLRTIDHNEALPKCVITIQSDVTDIRVISEWSNNTVCQGSAIEDEDEARRAAVGEAIERYCVNVIDSEPIVIGSYDDLLSSGRTPVPPESFILFSSEQYAQAGFRFTPFTPHTRIPWMPARNFTRQRDDFVPLSMVYVNYNQKGTIHGEPFSSFPRIAPIPYAGIAAGHDFEGALLNGLEEIIERDATMIWWHSKPTINPVSIESPKVAETVDRFLAKGFDLSFFILPNEFHIPVVAAVLRNDHHRTCNIGFSCRPSTEAAALKAITEAATLFDGAIDLLDPAGRMFSAIERLELSPNMALPYRQDRAYLDTIEWNYDSVHDLMIQQQLNLDPRAHEHRSPHLDRPIVPITRYPVDEGESRASAYYRNKLEAAGYEILAADVTTPDIRACNGVVLRVLVPGLVPNFPAGDITLGGGRILNAYHRMGLHDAPQSPDQLNRFPLPHA
>NZ_CP040505.1|WP_005962414.1|183306_183756_-|GNAT-family-N-acetyltransferase
MAVELLTESTPEIVEAMERLIPQLSRSAKPLDAQACERFISQPGVHFLIYRPDTADARGEHPILGMLSLAIFEIPTGVRAWIEDVVVDEAARGQGAGLKLVEAALEQAKKVGARTVDLTSRPSREAANRLYRRAGFEQRETNVYRVPLD

Crispr_ID: NZ_CP040505_8

• CRISPR_ID: NZ_CP040505_8
• CRISPR_location: 213916-213994
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 1 spacers
• Cas_protein_info: cas1,cas2

Consensus repeat of NZ_CP040505_8

Consensus_repeat	Method
GCAGCGCCAACTACTACCGCAGCAT	CRISPRCasFinder

spacers of NZ_CP040505_8

>8.1|213941|29|NZ_CP040505|CRISPRCasFinder
CCGGGATACTCGCTGCATCTAGAGGGACT

CRISPR arrays and Neighbor proteins around NZ_CP040505_8

CRISPR arrays

The CRISPR arrays of NZ_CP040505_8

>merge|NZ_CP040505|8|213916-213994|CRISPRCasFinder
GCAGCGCCAACTACTACCGCAGCATCCGGGATACTCGCTGCATCTAGAGGGACTGCAGCGCCAACTACTGCCGCAGCAT

>NZ_CP040505|8|8|213916-213994|CRISPRCasFinder
GCAGCGCCAACTACTACCGCAGCAT	CCGGGATACTCGCTGCATCTAGAGGGACT
GCAGCGCCAACTACTGCCGCAGCAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005962397.1|201336_202371_+|DnaJ-domain-containing-protein	unknown	unknown	gnl|CDD|184599
NZ_CP040505.1|WP_005962379.1|223577_224078_-|PH-domain-containing-protein	unknown	unknown	gnl|CDD|367615
NZ_CP040505.1|WP_005962388.1|212701_213499_-|exodeoxyribonuclease-III	unknown	unknown	gnl|CDD|197320
NZ_CP040505.1|WP_051057840.1|208338_211002_+|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl|CDD|274529
NZ_CP040505.1|WP_131247179.1|230322_232338_+|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|376633
NZ_CP040505.1|WP_005962383.1|219830_221072_+|N-acetylmuramoyl-L-alanine-amidase-family-protein	unknown	unknown	gnl|CDD|227588
NZ_CP040505.1|WP_005962394.1|204799_205537_+|adenosylcobyric-acid-synthase	unknown	unknown	gnl|CDD|225974
NZ_CP040505.1|WP_005962381.1|221932_222757_-|HAD-family-hydrolase	unknown	unknown	gnl|CDD|319832
NZ_CP040505.1|WP_005962389.1|211548_212364_+|serine-hydrolase	unknown	unknown	gnl|CDD|365903
NZ_CP040505.1|WP_040313789.1|232334_232616_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NZ_CP040505.1|WP_131247279.1|224136_224787_+|TrmH-family-RNA-methyltransferase	unknown	unknown	gnl|CDD|349969
NZ_CP040505.1|WP_005962395.1|203576_204800_+|DUF1727-domain-containing-protein	unknown	unknown	gnl|CDD|223840
NZ_CP040505.1|WP_131247181.1|214094_216227_-|DUF2339-domain-containing-protein	unknown	unknown	gnl|CDD|378390
NZ_CP040505.1|WP_005962391.1|207334_208039_+|YbjN-domain-containing-protein	unknown	unknown	gnl|CDD|371210
NZ_CP040505.1|WP_005962384.1|218053_219169_+|N-acetylmuramoyl-L-alanine-amidase-family-protein	unknown	unknown	gnl|CDD|227588
NZ_CP040505.1|WP_005962392.1|206867_207335_+|YbjN-domain-containing-protein	unknown	unknown	gnl|CDD|371210
NZ_CP040505.1|WP_051057804.1|205904_206768_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_040313555.1|221216_221786_-|orotate-phosphoribosyltransferase	unknown	unknown	gnl|CDD|234771
NZ_CP040505.1|WP_040313554.1|224930_225959_+|class-II-fructose-bisphosphate-aldolase	unknown	unknown	gnl|CDD|236406
NZ_CP040505.1|WP_005962396.1|202374_202920_+|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|133394

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP040505.1|WP_131247179.1|230322_232338_+|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	3.4e-87	287.1	0.0
NZ_CP040505.1|WP_040313789.1|232334_232616_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	8.5e-24	78.3	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005962397.1|201336_202371_+|DnaJ-domain-containing-protein	gnl|CDD|184599	PRK14277, PRK14277, chaperone protein DnaJ; Provisional.	8.747e-63
NZ_CP040505.1|WP_005962379.1|223577_224078_-|PH-domain-containing-protein	gnl|CDD|367615	pfam03703, bPH_2, Bacterial PH domain. Domain found in uncharacterized family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices. Members of this family have a PH domain like structure.	2.01874e-15
NZ_CP040505.1|WP_005962388.1|212701_213499_-|exodeoxyribonuclease-III	gnl|CDD|197320	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Escherichia coli ExoIII, Neisseria meningitides NExo,and related proteins. These are ExoIII family AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiencies. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity. For example, Neisseria meningitides Nape and NExo, and exonuclease III (ExoIII) and endonuclease IV (EndoIV) in Escherichia coli. NExo and ExoIII are found in this subfamily. NExo is the non-dominant AP endonuclease. It exhibits strong 3'-5' exonuclease and 3'-deoxyribose phosphodiesterase activities. Escherichia coli ExoIII is an active AP endonuclease, and in addition, it exhibits double strand (ds)-specific 3'-5' exonuclease, exonucleolytic RNase H, 3'-phosphomonoesterase and 3'-phosphodiesterase activities, all catalyzed by a single active site. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes ExoIII and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily.	6.07189e-105
NZ_CP040505.1|WP_051057840.1|208338_211002_+|ATP-dependent-chaperone-ClpB	gnl|CDD|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NZ_CP040505.1|WP_131247179.1|230322_232338_+|CRISPR-associated-endonuclease-Cas1	gnl|CDD|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	7.18325e-97
NZ_CP040505.1|WP_005962383.1|219830_221072_+|N-acetylmuramoyl-L-alanine-amidase-family-protein	gnl|CDD|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	1.92057e-28
NZ_CP040505.1|WP_005962394.1|204799_205537_+|adenosylcobyric-acid-synthase	gnl|CDD|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	8.28725e-93
NZ_CP040505.1|WP_005962381.1|221932_222757_-|HAD-family-hydrolase	gnl|CDD|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.515e-116
NZ_CP040505.1|WP_005962389.1|211548_212364_+|serine-hydrolase	gnl|CDD|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	1.50658e-26
NZ_CP040505.1|WP_040313789.1|232334_232616_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.53988e-24
NZ_CP040505.1|WP_131247279.1|224136_224787_+|TrmH-family-RNA-methyltransferase	gnl|CDD|349969	cd18096, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU. RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	2.83433e-57
NZ_CP040505.1|WP_005962395.1|203576_204800_+|DUF1727-domain-containing-protein	gnl|CDD|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	5.04301e-46
NZ_CP040505.1|WP_131247181.1|214094_216227_-|DUF2339-domain-containing-protein	gnl|CDD|378390	pfam10101, DUF2339, Predicted membrane protein (DUF2339). This domain, found in various hypothetical bacterial proteins, has no known function.	0.000185317
NZ_CP040505.1|WP_005962391.1|207334_208039_+|YbjN-domain-containing-protein	gnl|CDD|371210	pfam10722, YbjN, Putative bacterial sensory transduction regulator. YbjN is a putative sensory transduction regulator protein found in Proteobacteria. As it is a multi-copy suppressor of the coenzyme A-associated temperature sensitivity in temperature-sensitive mutant strains of Escherichia coli the suggestion is that it both helps CoA-A1 and possibly works as a general stabilizer for some other unstable proteins. This family was expanded to subsume other related families: DUF1790, DUF1821 and DUF2596.	1.36748e-11
NZ_CP040505.1|WP_005962384.1|218053_219169_+|N-acetylmuramoyl-L-alanine-amidase-family-protein	gnl|CDD|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	2.17755e-41
NZ_CP040505.1|WP_005962392.1|206867_207335_+|YbjN-domain-containing-protein	gnl|CDD|371210	pfam10722, YbjN, Putative bacterial sensory transduction regulator. YbjN is a putative sensory transduction regulator protein found in Proteobacteria. As it is a multi-copy suppressor of the coenzyme A-associated temperature sensitivity in temperature-sensitive mutant strains of Escherichia coli the suggestion is that it both helps CoA-A1 and possibly works as a general stabilizer for some other unstable proteins. This family was expanded to subsume other related families: DUF1790, DUF1821 and DUF2596.	1.16324e-11
NZ_CP040505.1|WP_040313555.1|221216_221786_-|orotate-phosphoribosyltransferase	gnl|CDD|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	2.64402e-66
NZ_CP040505.1|WP_040313554.1|224930_225959_+|class-II-fructose-bisphosphate-aldolase	gnl|CDD|236406	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional.	0
NZ_CP040505.1|WP_005962396.1|202374_202920_+|helix-turn-helix-transcriptional-regulator	gnl|CDD|133394	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	1.10707e-36

Protein sequences

>NZ_CP040505.1|WP_005962388.1|212701_213499_-|exodeoxyribonuclease-III
MKFATWNVNSIRTRVDRVIAFLERSEVDVLAMQEIKCTPEQFPIEPFTAAGYEVAIHGLNQWNGVAIASRLPIVKVQDHFADQPGFGEPKVVEARALGVTLRGENEKETCIWSLYVPNGRELDHPHYAYKLDWLRKLRSDAQSWLAADPKARIAMVGDWNVAPFDEDVWDMSAFDGATHVSEPERQAFFAFAEDGWTEVTRDRVTNYTFWDYQRLRFPKNEGMRIDFVYASPALAPSVSAAQIDRNERKGKGASDHVPVIITLKD
>NZ_CP040505.1|WP_005962389.1|211548_212364_+|serine-hydrolase
MEGATVALSIDIPFTHALALWAGGETIHEQGDLSKRYPLASVTKLCTAWSALVAVERGLCLLDDPAGPEGSTIRHLLAHASGLPYESREPQFSVAKRRVYSNAGFEILGDVLEEASGSPIERWIEEAVFEPLGMTTAELVGSPAWAGVASVEDLLILGREMLEPTLISPELAQEAMTPQFPELVGVVPGYGRHAPCPWGLGIEIRGNKSPHWTGPSFPAGTVGHFGVSGSFLWVDRTHGATCAFLGTEKFGAWHKEHWSTMNEELLALILR
>NZ_CP040505.1|WP_051057840.1|208338_211002_+|ATP-dependent-chaperone-ClpB
MTKEFTTKAQEAIASALQSAQAAGNPQVMPIHLLEALLEQKEGIATALVDAVGADRSAIGARTRNALVTLPSASGASASQAQTARALLDVVNQARSLADKGGDAYVSTEHLLIALAASKDEAGRILSSAGATPEALSEALARLRPEAITSADPEGSFEALKKYGRDLTEVAREGKLDPVIGRDAEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVAGDVPESLRDKILIALDLPAMVAGAKYRGEFEERLKAVLAEIQRSDGQIITFIDELHTVVGAGAGSEGAMDAGNMLKPMLARGELRMVGATTLDEYRENVEKDPALERRFQQVFVGEPSVEDTVAILRGIAPKYEAHHKVTISDGALVAAASLSDRYITGRQLPDKAIDLIDEAASRLRMELDSSPVEIDELRRAVDRLRMEESYLEESDPEHVDESTQERLDKLRADLADKQETLTALTGRWEAEKAGHNRVGELRVQLDELRTQLELAIRENRWEEAGRLQNGEIPAVERQISEAEAASEQADTDSAEPMIAEKVGPTEIAEVVESWTGIPTGKLLQTETDKLLRMEEEIGKRLIGQKKAVQAVSDAVRRSRAGIADPNRPTGSFLFLGPTGVGKTELAKALAEFLFDDERAMVRIDMSEYSEKHSVARLVGAPPGYVGYEQGGQLTEAVRRRPYCAILLDEVEKADPEVFDVLLQVLDDGRLTDGQGRTVDFRNTILILTSNLGSQFLADQTMNEEERRGAVMEAVRRSFKPEFLNRLDETVMFDPLSADDLSGIVDLMVADLARRLEDRRIGLLVSEPARGWLTRIGYDPAYGARPLRRVIQKEIGDRLAKMLLAGEIADGRTVRVDVSDELDSLCMKVFESAEAAEQAALGGVEEECLG
>NZ_CP040505.1|WP_005962391.1|207334_208039_+|YbjN-domain-containing-protein
MGIFSWLSDRFGEGDRSRDGDEHREQPATPMDAEHSPAPVGEQQPTAPIGAEHSSAPVGEQHPEALEGEAASSEEEPKAPTFTDFTVRPVTIERLGLLFDSFGWKWSLDDDGDIASRWNGHNFYFRMVGAHHDVLSVVGFWKGTPREDQREEVTFRIEEWHRTHLWPTCALREVNGELEPLAELNLDVEMGMTDQQLYTQCRCALGTTLEFFDELSEHLGVPESDDEGRESSES
>NZ_CP040505.1|WP_005962392.1|206867_207335_+|YbjN-domain-containing-protein
MSDASGVDVPQSDPVLEQNPTPITQDRVKKIFDSQGWRWFVDNEGDLGGMWNLHTFYFRFLSPEKDVFQVYGVLNREISIDRLEEVRAFLMDWHLRKFWPKCEYRITDDGEIRVQAENSVHWEYGATDAQLLQQINCGIATTTDFFDKMIERLGL
>NZ_CP040505.1|WP_051057804.1|205904_206768_+|hypothetical-protein
MASQMNDEPRYGQRSSEHSQGTPSQVPSQASTPRPQYGQIPAEQGPSYGTHQPHGTYQGAEHNASQATQSGADLPLRFLADDAVRAMGSSYGQQFPSAQPAPHQNGYFPNAGAPVLKVPSRVGPILLIVFGILSAVIIAPLAFVGGILGGIDFTSMMDRMSPVTSGDTVTVDDSGALMVVSQAGNVTSCSLEGSGGTHRMELVGNDTFFAQKLERGDYVLECVGSGSSNLLAFSGLDADSIMNAGFSGFAWGTGVGVLSLFLTVGGIVWLIVVNQKRKAILTALARY
>NZ_CP040505.1|WP_005962394.1|204799_205537_+|adenosylcobyric-acid-synthase
MSESTLRIGVLMPEVLGTYGDTGNAIVLKERARRRGIAAEVVKVGLLDAIPESLDIYALGGGEDTAQSLAAQKLREDPGLMRALDAGRPLLAICASLQVLGHWYRDARDQRVAGLGVLDITTDPQGSRSIGELVSEPILEGLTETLTGFENHGGGTVLGPEAKPLGRVVKGTGNGTPEGCEPAPVAYDGVVQGSIIATYMHGPCLARNPELADLLISRATGLELEPLEVPGVGALRAERLGTLGV
>NZ_CP040505.1|WP_005962395.1|203576_204800_+|DUF1727-domain-containing-protein
MIGGEVAMRVSPRIMADLAAPMDTVIVSGTNGKSTTTRMVRAALETRGPVASNTNGDNMASGVITALMNAPRAPFAALEVDEMHLPAVAGEVNPEVLVLLNLSRDQLDRVGEISSVELRLRQAVEEHPNAIIIANCDDPLIVSAACSSSKVVWVAAGAGWGADSIAYPRGGRVLWENGTWRLVPAQSGGALPELCERPRPDWWLDDIDLSASTPKARLNGPDGVSVELALALPGRANLSNAAQAVAAAAALGVSPQAAADAICSVREVAGRYSIYEVDGRQARIMLAKNPAGWQETMTMIDPEVKQVVIGLNGQIPDGQDLSWLWDVDFGALARTSDEDGEPIRVVACGERGADLAVRLEYANIHTSFVKTPMEALAACAPGRVEMLLNYTALRDFKTILDAREARK
>NZ_CP040505.1|WP_005962396.1|202374_202920_+|helix-turn-helix-transcriptional-regulator
MAAQGNGAEEALTFVISVAAELAGMHPQTLRQYDRLGLVIPARAKGRGRRYSKRDIQRLRDVQRMSQEEGINLAGIQRILELERSVERLEEENLALKERLAELMQRRDRVFAATPSGEVLPVRRGERSWAPKRSSSGGGELALWRPFRPPFHFRPEQRVRAVIEAGPAGVRVIEGSVAVID
>NZ_CP040505.1|WP_005962397.1|201336_202371_+|DnaJ-domain-containing-protein
MSEQEWFNKDFYKVLGVSKDADDAAIKKAYRKLARTWHPDKNPGDEKAETRFKEIGEAYSVLSNKEQRRKYDAIRSMASGGARFSAGGAGGPDLSDLFGGAFTGGGTRVNFGGGADFGDILGGLFGASQPFAGAQGFGGGGFDPGRSGFASSPFAGAQTPRPRKGEDRHASTSITFREALAGTEVIMSIDGSKQKVRLPKGVKDGQKIRLRKKGRPGVNGGAPGDLVITIHVGTHPVFTRDHDNLRIVLPVTFAEATLGAKIEVPLLDGSSVTVKVPAGTQSGAVLRVRGRGVETSKTKGDLLIEVRVAVPKDLNDTQKAALEGFIATLEDSDPRAELLTKAKA
>NZ_CP040505.1|WP_131247181.1|214094_216227_-|DUF2339-domain-containing-protein
MMPSLKDASSSRLIVLLLSGLAALLVILAATSLIALLWDSIPNWVKVLTLGLVAIAMTASGALWHKREAHPSIPPATLTGIGTGLGYLTGIGAALLEVLPPIGAFLVLLVWTIATTALATLSKMPFTLIATAIGGVLTLSLLYSHALGHPSQALLVEGLILAYSAACLVSSTIASRPLHGAFKRWTIASSAAATVPALLFVPVEAASKQSSLGTYIMSIALAVLALVTVAFLVREPEQREWQWVWTLAPLVVIISYLSLTSIAATEEERLFLSLVHFLLCLGLIGFAATPKLSGPVKGLAEYALLAPPIFLPLLDEVGVAPITTASYKTLVDCAAWFVILACAALATQQRSSSFLVILPIVALYRGFDFTMETFSVVFIILTLLIATVLIDRALKALPWQRAFAMWLGIFGLIFKVPWEIVSQIPKHSTYRNALEVSVIFLVFLVVALLLILGLATPNIGPADLWMGRRLIFSSTAGDSAATSRTTSFSPASPAPMSAAPATGFGQPPGMPRRESGGVFAPLSVLMTLFFVSSVTYILPLMLLSSVWNFLFGLPSASSTPLDLVVSLGMLILALAFVLAMKSYATHSLYGILIPLVLVSVVWQAFNVIRALDNAPWVATLMVLLVGAAAIVLGFRWKAPNMRLTSLVIVIIAVFKLSLIDTGFNDSISRVLSLLIAGLICFALSVLYSKLSAKARAKETLPSTDFVTPGS
>NZ_CP040505.1|WP_005962384.1|218053_219169_+|N-acetylmuramoyl-L-alanine-amidase-family-protein
MSAVTRSFGRSLLRVAILLFVVVAMVIPSQANATPGGQMLPVDGEDQLDAQSVQSEDPSLAPQEIVSPDAQDSRATRTLSVTVKLPAGTNPQWLANAYASLIPVHSYPGAPHPSKKINPSTGHVTMTGIPSGQYRLAIDFRKDITLDGNWFSTSSALIYYPGTMFYWQEAQIIDLEPQPEATVAVNVPQDAINTYYSYPNGVPSADGTGRWIQSVHDWIFTDNNWNAYTGWHFVDGYWYWTTGDASLARGWHLIWGKWYFFQEGTTRMHIGWHQEYDGTWYYLGSNGAMVTGWAWIGGTWYYFHGNGAMATGWAWIGGSWYYFHSGGAMATGWAWIGGSWYYFHSGGAMATGWVKIGGTWYYFSPSGAWLY
>NZ_CP040505.1|WP_005962383.1|219830_221072_+|N-acetylmuramoyl-L-alanine-amidase-family-protein
MKLLPNSAFTGAVLCTALFSLTSFAGTAMASPSADSSTPEGEWTQSSLEPSGKSSLVDPDDEVTEDLTQSSDHQAKYAPRSSFAPVNGPENANPANDDVADDAVVGEEVQAGPQQGSAQHPMEVEDGTWVVDNGRWKYRNQDGTFLTSRWATIDADVYCFDASGFIRTGWYKEDGSWYRLAATGQRLGGWHTEEGIWYYLDPDSGEMITGPIMSGGAEYYLHPNGVMATGWVHHAHRWHFYSASGAGVRGWVSDRGMWYYLDPQTGVMQTGSITVDGADYYLQPTGEMATGWVHHADRWHFYSASGAGVRGWGSDRGMWYYLDPQTGVMQTGSITVDGADYYLQPTGEMATGWVQHSDGWRFYDLSGVKRTGWIQWGYSWYYLQPGSGVMLAGTTQVIDGQPHTFMPDGKWVG
>NZ_CP040505.1|WP_040313555.1|221216_221786_-|orotate-phosphoribosyltransferase
MTNDSHKARLSALVKDLAVIHEKVTLASGRESDFYVDMRRATLHHEAAPLIGHVMLDLLEEAGFAPGEDYVAVGGLTMGADPVAAAMLHAAASRGLNLDAFVVRKAAKDHGMKRRIEGPDVKGKRVVVLEDTSTTGGSPLEAAKALQEAGAEVVAVAVIVDRSTGAKERIEAEGFPYFHALGLEDLDLA
>NZ_CP040505.1|WP_005962381.1|221932_222757_-|HAD-family-hydrolase
MTIMNNAPKPLAEMPPVAAWLSDMDGVLVKENRALPGANEFLDALRHTNTPFLVLTNNSIFTNRDLSARLANSGLDVPEESIWTSANATAAFLAQQSPRSTAYVIGEAGLTTALHGAGYVMTEQDPEYVVLGETRTYDFNSLTRAIRLIEGGAKFIATNPDVTGPSDEGTLPATGSIAAMITAATGKRPYFVGKPNPVMIRAGLNKIGAHSEHTAMVGDRMDTDVQAGVEAGLRTHLVLSGSTSREQIKDYPYRPFGVHEGIGELVELVKAHIG
>NZ_CP040505.1|WP_005962379.1|223577_224078_-|PH-domain-containing-protein
MAQLLSKDEIVVRHMRTHIKAVLGNIIAEILLLAGGILATVYMPPEWEPFSLAFVWAIVLVATLPLFLVPVLRWASSTYTLTSKRVITRHGILNRRGHDLPLSRISDVASERDLVDRLFGCGTLTLQTSSDDPLVLHDIPKIDYVQLEVSNLLFDDVQGAVDADPE
>NZ_CP040505.1|WP_131247279.1|224136_224787_+|TrmH-family-RNA-methyltransferase
MSDETTPLGPINEGGASCGVGPWEGPVPEDPRYDPELLALGDRRNVEDHYRYWTMDAIREDLKRRSLPFEVAIENLGHDFNIGSIVRTANALGAARVHIVGRRRWNRRGAMVTDRYLEVDHVDSAQALADSCTSRGLVLVGVDNVPGSLPLESTELPRRACLVFGEESNGLSEEMIDLCECVVKISQRGSTRSMNVGHAAAIVMWEHARKLSAEQE
>NZ_CP040505.1|WP_040313554.1|224930_225959_+|class-II-fructose-bisphosphate-aldolase
MPIATPEVYAEMLNRAKAGKFAYPAINVTSSQTVTAAIQGFAEAESDGIIQISVGGAEYASGSTIKNRVTGSLALAAYATEVAKNYGVTIALHTDHCAKQNIDSWIRPLMEIEAEQVAKGGLPTFQSHMWDGSAVPLDENLEIAKEMLELSVKANTILEVEIGVVGGEEDGVVGEINEKLYTTTEDALKTVEALGMGEKGRYLTALTFGNVHGVYKPGHVKLRPEILGTIQEEVAAKIGWKDNRPFDLVMHGGSGSTADEIALAVANGVIKMNVDTDTQYAFTRPVVEHMFRNYDGVLKIDGEVGNKKMYDPRSWGKSAEAGMAARVVEACQRLGSVGTKMA
>NZ_CP040505.1|WP_131247179.1|230322_232338_+|CRISPR-associated-endonuclease-Cas1
MESAPRRTPTPPMRPRTAGYFFGQPLYRLRSAMNTTGEETKLSPVFLQISSVETLERAWQSVLARDAQDGVLQRQSKRIIENADEFLNQLSALLRNGTYEPEPLNRVDIPKGEHGKTRTLNIPTIHDRIVERAIVDTIAFTADLVQSSCSFAYRTGIGVDDAVHHVATLREEGYQYVLRTDIEDFFPHVNLEHALEALPESLQERDLLALLRIVALPRRAHGQRRARSRGVAQGSTLSPLLANLSLTRFDHDICDAGYGYARFADDIVVCSPREQDILDAIELLSDLAAAHGLKLNQDKTIMTTFDEGFCYLGVDFTRTRPDADPYHDIKGQPDPDHVIYVGRDGARVHVTKGRLIVDGTDGLPQMSIPQRSVSRIVLTGSVGLSAGARSWALYNDIDVLCLSRRGTYLGQLAGPRSTVNARRLLAQAAFSDDEEQRLPLARSIVKAKLRNQVHVLNRIGRRDTRTDVKSAAQELRNLAEELTHADSINEIMGLEGAASTDYYTALSSLVPEDVAFQGRSRRPPRDLANAALSYCYAILLGECTGALFAAGLEPSLGILHSSTDKRPSLSLDLMEEFRPLLVDSTVMALLRTHRLRPEHATSAPGDEDGVWLNREGKKIVVDGYEATMQRHVKGALPGFTGTWRRHIHHEAQLLGRAIMEPDYTWTGVAWR
>NZ_CP040505.1|WP_040313789.1|232334_232616_+|CRISPR-associated-endonuclease-Cas2
MTYIVAYDIAANGRRNRVAHTLQSWGYRIQESVFQLRLEAADLDLVRQKLESIIDSMDDVVHIYPVCTGCAARAEILGTAVALDDVGLYRGLW

Crispr_ID: NZ_CP040505_9

• CRISPR_ID: NZ_CP040505_9
• CRISPR_location: 226208-230030
• CRISPR_type: TypeIII
• Repeat_type: NA
• Spacer_info: 52 spacers
• Cas_protein_info: cas1,cas2,csm3gr7,cas10

Consensus repeat of NZ_CP040505_9

Consensus_repeat	Method
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CRISPRCasFinder
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CRT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	PILER-CR

spacers of NZ_CP040505_9

>9.1|226245|37|NZ_CP040505|CRISPRCasFinder,CRT
AAAGTCGCCCTTTAGCTTTGAGCGAATTTCTTTCTCG
>9.2|226319|37|NZ_CP040505|CRISPRCasFinder,CRT
CGCAGCGTGAATAAATCGCCGGAAGGTCTGGCGTCCC
>9.3|226393|34|NZ_CP040505|CRISPRCasFinder,CRT
GATGACAACATCTCTGAAGGGCGCTTCCCTCTGG
>9.4|226464|36|NZ_CP040505|CRISPRCasFinder,CRT
CTCACGAAAGAGACTCTTGAAAGCATGCTCGCCAAC
>9.5|226537|34|NZ_CP040505|CRISPRCasFinder,CRT
ACGAAGCCCGATACGCCTCCCAATCACCCCAAGT
>9.6|226608|37|NZ_CP040505|CRISPRCasFinder,CRT
GATACCAAGCCTGAGTTTCTGGCAATCGGCCGGAATT
>9.7|226682|37|NZ_CP040505|CRISPRCasFinder,CRT
GCCTAAAGAATCCTGTCATCATACCCTTGAAAGAGGG
>9.8|226756|38|NZ_CP040505|CRISPRCasFinder,CRT
CACAGAAAAATACTCTGTAAAACCGCTGGAAATCCCGG
>9.9|226831|35|NZ_CP040505|CRISPRCasFinder,CRT
GAGAGAAAGGAAGATCACGGTCATGTGGATCGATC
>9.10|226903|37|NZ_CP040505|CRISPRCasFinder,CRT
GGTCGCCCCCAGGGTTGAGCTAAGTTTTCCGGTCGTG
>9.11|226977|38|NZ_CP040505|CRISPRCasFinder,CRT
CCAGCCGCGATGACACGAACGAACTCGTCTGGTGGAGT
>9.12|227052|36|NZ_CP040505|CRISPRCasFinder,CRT
GTAGGATTTGGGCACTTGATGTCGAATACGGGAACG
>9.13|227125|37|NZ_CP040505|CRISPRCasFinder,CRT
TATATACAATCTCGGTGGTGTGTAAACACTGCCAGAA
>9.14|227199|37|NZ_CP040505|CRISPRCasFinder,CRT
GAGTAATCACCACGAAATTCGACGAGACTGACCTTAG
>9.15|227273|33|NZ_CP040505|CRISPRCasFinder,CRT
CTCTCTCGGTTCACGACCATGCTTACGGTTTCG
>9.16|227343|35|NZ_CP040505|CRISPRCasFinder,CRT
CTGCGGTACGCGTAGGTGAGGGTCGCTCCGCCGCC
>9.17|227415|39|NZ_CP040505|CRISPRCasFinder,CRT
CGACGTTGTATCGGTCGAAATCCGAAACTAAAGGAGTCT
>9.18|227491|35|NZ_CP040505|CRISPRCasFinder,CRT
GTGTATGACCTGAGTCTCCAGGTCAGCGCGCCTAC
>9.19|227563|37|NZ_CP040505|CRISPRCasFinder,CRT
CGCGACGTGAACAGCTACCTATATGATCTAGGGGTCT
>9.20|227637|34|NZ_CP040505|CRISPRCasFinder,CRT
ACGAAGCCCGATACGCCTCCCAATCACCCCAAGT
>9.21|227708|33|NZ_CP040505|CRISPRCasFinder,CRT
TGATCTCCCACATGCGACAACTGATCTCCCACA
>9.22|227778|36|NZ_CP040505|CRISPRCasFinder,CRT
TCGTGGCTCGTAGCAAGCGCGGGTTCGGGTCGATCA
>9.23|227851|36|NZ_CP040505|CRISPRCasFinder,CRT
GCTCAACAGAGTGAAAGTAGCCCTTACATAGGAAGG
>9.24|227924|35|NZ_CP040505|CRISPRCasFinder,CRT
AAAGCAACCTCGCAGGGGGTCATCCTGCTTGAGGT
>9.25|227996|34|NZ_CP040505|CRISPRCasFinder,CRT
GTCGACGTGCGCACGGATGATGTCGAAATCGACG
>9.26|228067|37|NZ_CP040505|CRISPRCasFinder,CRT
CGATCGGCACGCCCTACGTATGGGGCGGCGTCGACGT
>9.27|228141|36|NZ_CP040505|CRISPRCasFinder,CRT
AAAAATGAAGGTGAGGTTCACCTTTATTAATGGCAA
>9.28|228214|42|NZ_CP040505|CRISPRCasFinder,CRT
GAGCTGGGACCGGAAGTTTGGTGCCCGGTACGATCGCACCGA
>9.29|228293|36|NZ_CP040505|CRISPRCasFinder,CRT
GAGAGAGAAAGGGGGCGATTCGCTTGGCAAAGGCGA
>9.30|228366|37|NZ_CP040505|CRISPRCasFinder,CRT
GACATTGGCATCGATGTCAAACTCCACAAGATCGGAG
>9.31|228440|34|NZ_CP040505|CRISPRCasFinder,CRT
GTCACGGAGGAGCAGTACCACCAAATCCTAGGAG
>9.32|228511|37|NZ_CP040505|CRISPRCasFinder,CRT
GCAAATCAGGCTAGTGCTTACAAAGATAGACAGACAG
>9.33|228585|31|NZ_CP040505|CRISPRCasFinder,CRT
TTTGCTGACGGCAGCAAACGTGTCGTGGTAA
>9.34|228653|35|NZ_CP040505|CRISPRCasFinder,CRT
TAAGACGGCATCCATGAGGAGCGCGCCCGCTGAAA
>9.35|228725|35|NZ_CP040505|CRISPRCasFinder,CRT
ATGAGCTCGCTCAAGCAATTCTCATTGGCGACGGT
>9.36|228797|36|NZ_CP040505|CRISPRCasFinder,CRT
AAGCGATCAACCGCTACCTCGAGCGCCTCATGAACA
>9.37|228870|35|NZ_CP040505|CRISPRCasFinder,CRT
AGAAGAAAAATGGAAACTTACACTGGAGAGACTGC
>9.38|228942|38|NZ_CP040505|CRISPRCasFinder,CRT
TTGAAGTAGAGGGTGCCCATGGCTCTTCCTCCTCGGTG
>9.39|229017|38|NZ_CP040505|CRISPRCasFinder,CRT
TCAGAAAGGACACTCCGATGGCACGCAACACCAAACTT
>9.40|229092|35|NZ_CP040505|CRISPRCasFinder,CRT
CTCCCTAATGCCTACCTGGACTAACAGATGCCAGC
>9.41|229164|36|NZ_CP040505|CRISPRCasFinder,CRT
AGCGGAGCGGATGTCATATACGTTAACGCAATGTCT
>9.42|229237|32|NZ_CP040505|CRISPRCasFinder,CRT
CTCCAACACCATCAGGAGATCCTGTGGTGTTT
>9.43|229306|37|NZ_CP040505|CRISPRCasFinder,CRT
TGTGGTGAGGGTAGTGGGTAAAGAAGCGCCGGCACGT
>9.44|229380|35|NZ_CP040505|CRISPRCasFinder,CRT
AGTGGGTCCCCGGCGCCCCCAATATCCCCGTCTAC
>9.45|229452|35|NZ_CP040505|CRISPRCasFinder,CRT
TTTGGGCGCACAGCGCGGACAACGTGGTGGAGATC
>9.46|229524|35|NZ_CP040505|CRISPRCasFinder,CRT
GAGATGAACGCATGACCAAGCGCGAAATCCGGACC
>9.47|229596|36|NZ_CP040505|CRISPRCasFinder,CRT
CTGTGTACAAGGAAATCTTGGAAGGTAAGGTATCTA
>9.48|229669|35|NZ_CP040505|CRISPRCasFinder,CRT
GCGATGAAGCGCGATTCGATGGAGTGGGGTTTAGA
>9.49|229741|36|NZ_CP040505|CRISPRCasFinder,CRT
TGATATGGGAGCAGGATCACGGTTCAAAAAGTGTGA
>9.50|229814|35|NZ_CP040505|CRISPRCasFinder,CRT
AATGTGGAAACGCAGGAAATGCGTCCTCACAACTT
>9.51|229886|32|NZ_CP040505|CRISPRCasFinder,CRT
TGAAAGGAGCATAATTGTGTTGGACACGGAAA
>9.52|229955|39|NZ_CP040505|CRISPRCasFinder,CRT
TCTGGCTTACGACAACCTCGTAGTTGGTCTCATCGACGG
>9.53|226247|37|NZ_CP040505|PILER-CR
AAAGTCGCCCTTTAGCTTTGAGCGAATTTCTTTCTCG
>9.54|226321|37|NZ_CP040505|PILER-CR
CGCAGCGTGAATAAATCGCCGGAAGGTCTGGCGTCCC
>9.55|226395|34|NZ_CP040505|PILER-CR
GATGACAACATCTCTGAAGGGCGCTTCCCTCTGG
>9.56|226466|36|NZ_CP040505|PILER-CR
CTCACGAAAGAGACTCTTGAAAGCATGCTCGCCAAC
>9.57|226539|34|NZ_CP040505|PILER-CR
ACGAAGCCCGATACGCCTCCCAATCACCCCAAGT
>9.58|226610|37|NZ_CP040505|PILER-CR
GATACCAAGCCTGAGTTTCTGGCAATCGGCCGGAATT
>9.59|226684|37|NZ_CP040505|PILER-CR
GCCTAAAGAATCCTGTCATCATACCCTTGAAAGAGGG
>9.60|226758|38|NZ_CP040505|PILER-CR
CACAGAAAAATACTCTGTAAAACCGCTGGAAATCCCGG
>9.61|226833|35|NZ_CP040505|PILER-CR
GAGAGAAAGGAAGATCACGGTCATGTGGATCGATC
>9.62|226905|37|NZ_CP040505|PILER-CR
GGTCGCCCCCAGGGTTGAGCTAAGTTTTCCGGTCGTG
>9.63|226979|38|NZ_CP040505|PILER-CR
CCAGCCGCGATGACACGAACGAACTCGTCTGGTGGAGT
>9.64|227054|36|NZ_CP040505|PILER-CR
GTAGGATTTGGGCACTTGATGTCGAATACGGGAACG
>9.65|227127|37|NZ_CP040505|PILER-CR
TATATACAATCTCGGTGGTGTGTAAACACTGCCAGAA
>9.66|227201|37|NZ_CP040505|PILER-CR
GAGTAATCACCACGAAATTCGACGAGACTGACCTTAG
>9.67|227275|33|NZ_CP040505|PILER-CR
CTCTCTCGGTTCACGACCATGCTTACGGTTTCG
>9.68|227345|35|NZ_CP040505|PILER-CR
CTGCGGTACGCGTAGGTGAGGGTCGCTCCGCCGCC
>9.69|227417|39|NZ_CP040505|PILER-CR
CGACGTTGTATCGGTCGAAATCCGAAACTAAAGGAGTCT
>9.70|227493|35|NZ_CP040505|PILER-CR
GTGTATGACCTGAGTCTCCAGGTCAGCGCGCCTAC
>9.71|227565|37|NZ_CP040505|PILER-CR
CGCGACGTGAACAGCTACCTATATGATCTAGGGGTCT
>9.72|227639|34|NZ_CP040505|PILER-CR
ACGAAGCCCGATACGCCTCCCAATCACCCCAAGT
>9.73|227710|33|NZ_CP040505|PILER-CR
TGATCTCCCACATGCGACAACTGATCTCCCACA
>9.74|227780|36|NZ_CP040505|PILER-CR
TCGTGGCTCGTAGCAAGCGCGGGTTCGGGTCGATCA
>9.75|227853|36|NZ_CP040505|PILER-CR
GCTCAACAGAGTGAAAGTAGCCCTTACATAGGAAGG
>9.76|227926|35|NZ_CP040505|PILER-CR
AAAGCAACCTCGCAGGGGGTCATCCTGCTTGAGGT
>9.77|227998|34|NZ_CP040505|PILER-CR
GTCGACGTGCGCACGGATGATGTCGAAATCGACG
>9.78|228069|37|NZ_CP040505|PILER-CR
CGATCGGCACGCCCTACGTATGGGGCGGCGTCGACGT
>9.79|228143|36|NZ_CP040505|PILER-CR
AAAAATGAAGGTGAGGTTCACCTTTATTAATGGCAA
>9.80|228216|42|NZ_CP040505|PILER-CR
GAGCTGGGACCGGAAGTTTGGTGCCCGGTACGATCGCACCGA
>9.81|228295|36|NZ_CP040505|PILER-CR
GAGAGAGAAAGGGGGCGATTCGCTTGGCAAAGGCGA
>9.82|228368|37|NZ_CP040505|PILER-CR
GACATTGGCATCGATGTCAAACTCCACAAGATCGGAG
>9.83|228442|34|NZ_CP040505|PILER-CR
GTCACGGAGGAGCAGTACCACCAAATCCTAGGAG
>9.84|228513|37|NZ_CP040505|PILER-CR
GCAAATCAGGCTAGTGCTTACAAAGATAGACAGACAG
>9.85|228587|31|NZ_CP040505|PILER-CR
TTTGCTGACGGCAGCAAACGTGTCGTGGTAA
>9.86|228655|35|NZ_CP040505|PILER-CR
TAAGACGGCATCCATGAGGAGCGCGCCCGCTGAAA
>9.87|228727|35|NZ_CP040505|PILER-CR
ATGAGCTCGCTCAAGCAATTCTCATTGGCGACGGT
>9.88|228799|36|NZ_CP040505|PILER-CR
AAGCGATCAACCGCTACCTCGAGCGCCTCATGAACA
>9.89|228872|35|NZ_CP040505|PILER-CR
AGAAGAAAAATGGAAACTTACACTGGAGAGACTGC
>9.90|228944|38|NZ_CP040505|PILER-CR
TTGAAGTAGAGGGTGCCCATGGCTCTTCCTCCTCGGTG
>9.91|229019|38|NZ_CP040505|PILER-CR
TCAGAAAGGACACTCCGATGGCACGCAACACCAAACTT
>9.92|229094|35|NZ_CP040505|PILER-CR
CTCCCTAATGCCTACCTGGACTAACAGATGCCAGC
>9.93|229166|36|NZ_CP040505|PILER-CR
AGCGGAGCGGATGTCATATACGTTAACGCAATGTCT
>9.94|229239|32|NZ_CP040505|PILER-CR
CTCCAACACCATCAGGAGATCCTGTGGTGTTT
>9.95|229308|37|NZ_CP040505|PILER-CR
TGTGGTGAGGGTAGTGGGTAAAGAAGCGCCGGCACGT
>9.96|229382|35|NZ_CP040505|PILER-CR
AGTGGGTCCCCGGCGCCCCCAATATCCCCGTCTAC
>9.97|229454|35|NZ_CP040505|PILER-CR
TTTGGGCGCACAGCGCGGACAACGTGGTGGAGATC
>9.98|229526|35|NZ_CP040505|PILER-CR
GAGATGAACGCATGACCAAGCGCGAAATCCGGACC
>9.99|229598|36|NZ_CP040505|PILER-CR
CTGTGTACAAGGAAATCTTGGAAGGTAAGGTATCTA
>9.100|229671|35|NZ_CP040505|PILER-CR
GCGATGAAGCGCGATTCGATGGAGTGGGGTTTAGA
>9.101|229743|36|NZ_CP040505|PILER-CR
TGATATGGGAGCAGGATCACGGTTCAAAAAGTGTGA
>9.102|229816|35|NZ_CP040505|PILER-CR
AATGTGGAAACGCAGGAAATGCGTCCTCACAACTT
>9.103|229888|32|NZ_CP040505|PILER-CR
TGAAAGGAGCATAATTGTGTTGGACACGGAAA
>9.104|229957|39|NZ_CP040505|PILER-CR
TCTGGCTTACGACAACCTCGTAGTTGGTCTCATCGACGG

CRISPR arrays and Neighbor proteins around NZ_CP040505_9

CRISPR arrays

The CRISPR arrays of NZ_CP040505_9

>merge|NZ_CP040505|9|226208-230030|CRISPRCasFinder,CRT,PILER-CR
TACTTGATGCACCTTATGGCGCGAGGTGCTGTCTGACAAAGTCGCCCTTTAGCTTTGAGCGAATTTCTTTCTCGGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACCGCAGCGTGAATAAATCGCCGGAAGGTCTGGCGTCCCGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGATGACAACATCTCTGAAGGGCGCTTCCCTCTGGGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACCTCACGAAAGAGACTCTTGAAAGCATGCTCGCCAACGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCCGACACGAAGCCCGATACGCCTCCCAATCACCCCAAGTGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGATACCAAGCCTGAGTTTCTGGCAATCGGCCGGAATTGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGCCTAAAGAATCCTGTCATCATACCCTTGAAAGAGGGGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACCACAGAAAAATACTCTGTAAAACCGCTGGAAATCCCGGGTCTTAATGCACCTTATGGTGCGAGGTGCTTTCTGACGAGAGAAAGGAAGATCACGGTCATGTGGATCGATCGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGGTCGCCCCCAGGGTTGAGCTAAGTTTTCCGGTCGTGGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACCCAGCCGCGATGACACGAACGAACTCGTCTGGTGGAGTGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGTAGGATTTGGGCACTTGATGTCGAATACGGGAACGGTCTAAATGCACCTTATGGCGCGAGGTGCTTTCTGACTATATACAATCTCGGTGGTGTGTAAACACTGCCAGAAGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGAGTAATCACCACGAAATTCGACGAGACTGACCTTAGGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACCTCTCTCGGTTCACGACCATGCTTACGGTTTCGGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACCTGCGGTACGCGTAGGTGAGGGTCGCTCCGCCGCCGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACCGACGTTGTATCGGTCGAAATCCGAAACTAAAGGAGTCTGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGTGTATGACCTGAGTCTCCAGGTCAGCGCGCCTACGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACCGCGACGTGAACAGCTACCTATATGATCTAGGGGTCTGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCCGACACGAAGCCCGATACGCCTCCCAATCACCCCAAGTGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACTGATCTCCCACATGCGACAACTGATCTCCCACAGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACTCGTGGCTCGTAGCAAGCGCGGGTTCGGGTCGATCAGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGCTCAACAGAGTGAAAGTAGCCCTTACATAGGAAGGGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACAAAGCAACCTCGCAGGGGGTCATCCTGCTTGAGGTGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGTCGACGTGCGCACGGATGATGTCGAAATCGACGGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACCGATCGGCACGCCCTACGTATGGGGCGGCGTCGACGTGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACAAAAATGAAGGTGAGGTTCACCTTTATTAATGGCAAGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGAGCTGGGACCGGAAGTTTGGTGCCCGGTACGATCGCACCGAGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGAGAGAGAAAGGGGGCGATTCGCTTGGCAAAGGCGAGTCTCAATGCACCTTATGGCGCGAGGTGCTTTCTGACGACATTGGCATCGATGTCAAACTCCACAAGATCGGAGGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGTCACGGAGGAGCAGTACCACCAAATCCTAGGAGGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGCAAATCAGGCTAGTGCTTACAAAGATAGACAGACAGGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACTTTGCTGACGGCAGCAAACGTGTCGTGGTAAGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACTAAGACGGCATCCATGAGGAGCGCGCCCGCTGAAAGTCTTAATGCACCTTATGGCGCGAGTTGCTTTCTGACATGAGCTCGCTCAAGCAATTCTCATTGGCGACGGTGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACAAGCGATCAACCGCTACCTCGAGCGCCTCATGAACAGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACAGAAGAAAAATGGAAACTTACACTGGAGAGACTGCGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACTTGAAGTAGAGGGTGCCCATGGCTCTTCCTCCTCGGTGGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACTCAGAAAGGACACTCCGATGGCACGCAACACCAAACTTGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACCTCCCTAATGCCTACCTGGACTAACAGATGCCAGCGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACAGCGGAGCGGATGTCATATACGTTAACGCAATGTCTGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACCTCCAACACCATCAGGAGATCCTGTGGTGTTTGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACTGTGGTGAGGGTAGTGGGTAAAGAAGCGCCGGCACGTGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACAGTGGGTCCCCGGCGCCCCCAATATCCCCGTCTACGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACTTTGGGCGCACAGCGCGGACAACGTGGTGGAGATCGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGAGATGAACGCATGACCAAGCGCGAAATCCGGACCGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACCTGTGTACAAGGAAATCTTGGAAGGTAAGGTATCTAGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGCGATGAAGCGCGATTCGATGGAGTGGGGTTTAGAGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACTGATATGGGAGCAGGATCACGGTTCAAAAAGTGTGAGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACAATGTGGAAACGCAGGAAATGCGTCCTCACAACTTGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACTGAAAGGAGCATAATTGTGTTGGACACGGAAAGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACTCTGGCTTACGACAACCTCGTAGTTGGTCTCATCGACGGGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC

>NZ_CP040505|9|9|226208-230030|CRISPRCasFinder
TACTTGATGCACCTTATGGCGCGAGGTGCTGTCTGAC	AAAGTCGCCCTTTAGCTTTGAGCGAATTTCTTTCTCG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CGCAGCGTGAATAAATCGCCGGAAGGTCTGGCGTCCC
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GATGACAACATCTCTGAAGGGCGCTTCCCTCTGG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CTCACGAAAGAGACTCTTGAAAGCATGCTCGCCAAC
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCCGAC	ACGAAGCCCGATACGCCTCCCAATCACCCCAAGT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GATACCAAGCCTGAGTTTCTGGCAATCGGCCGGAATT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GCCTAAAGAATCCTGTCATCATACCCTTGAAAGAGGG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CACAGAAAAATACTCTGTAAAACCGCTGGAAATCCCGG
GTCTTAATGCACCTTATGGTGCGAGGTGCTTTCTGAC	GAGAGAAAGGAAGATCACGGTCATGTGGATCGATC
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GGTCGCCCCCAGGGTTGAGCTAAGTTTTCCGGTCGTG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CCAGCCGCGATGACACGAACGAACTCGTCTGGTGGAGT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GTAGGATTTGGGCACTTGATGTCGAATACGGGAACG
GTCTAAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TATATACAATCTCGGTGGTGTGTAAACACTGCCAGAA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GAGTAATCACCACGAAATTCGACGAGACTGACCTTAG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CTCTCTCGGTTCACGACCATGCTTACGGTTTCG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CTGCGGTACGCGTAGGTGAGGGTCGCTCCGCCGCC
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CGACGTTGTATCGGTCGAAATCCGAAACTAAAGGAGTCT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GTGTATGACCTGAGTCTCCAGGTCAGCGCGCCTAC
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CGCGACGTGAACAGCTACCTATATGATCTAGGGGTCT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCCGAC	ACGAAGCCCGATACGCCTCCCAATCACCCCAAGT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TGATCTCCCACATGCGACAACTGATCTCCCACA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TCGTGGCTCGTAGCAAGCGCGGGTTCGGGTCGATCA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GCTCAACAGAGTGAAAGTAGCCCTTACATAGGAAGG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	AAAGCAACCTCGCAGGGGGTCATCCTGCTTGAGGT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GTCGACGTGCGCACGGATGATGTCGAAATCGACG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CGATCGGCACGCCCTACGTATGGGGCGGCGTCGACGT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	AAAAATGAAGGTGAGGTTCACCTTTATTAATGGCAA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GAGCTGGGACCGGAAGTTTGGTGCCCGGTACGATCGCACCGA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GAGAGAGAAAGGGGGCGATTCGCTTGGCAAAGGCGA
GTCTCAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GACATTGGCATCGATGTCAAACTCCACAAGATCGGAG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GTCACGGAGGAGCAGTACCACCAAATCCTAGGAG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GCAAATCAGGCTAGTGCTTACAAAGATAGACAGACAG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TTTGCTGACGGCAGCAAACGTGTCGTGGTAA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TAAGACGGCATCCATGAGGAGCGCGCCCGCTGAAA
GTCTTAATGCACCTTATGGCGCGAGTTGCTTTCTGAC	ATGAGCTCGCTCAAGCAATTCTCATTGGCGACGGT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	AAGCGATCAACCGCTACCTCGAGCGCCTCATGAACA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	AGAAGAAAAATGGAAACTTACACTGGAGAGACTGC
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TTGAAGTAGAGGGTGCCCATGGCTCTTCCTCCTCGGTG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TCAGAAAGGACACTCCGATGGCACGCAACACCAAACTT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CTCCCTAATGCCTACCTGGACTAACAGATGCCAGC
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	AGCGGAGCGGATGTCATATACGTTAACGCAATGTCT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CTCCAACACCATCAGGAGATCCTGTGGTGTTT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TGTGGTGAGGGTAGTGGGTAAAGAAGCGCCGGCACGT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	AGTGGGTCCCCGGCGCCCCCAATATCCCCGTCTAC
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TTTGGGCGCACAGCGCGGACAACGTGGTGGAGATC
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GAGATGAACGCATGACCAAGCGCGAAATCCGGACC
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CTGTGTACAAGGAAATCTTGGAAGGTAAGGTATCTA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GCGATGAAGCGCGATTCGATGGAGTGGGGTTTAGA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TGATATGGGAGCAGGATCACGGTTCAAAAAGTGTGA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	AATGTGGAAACGCAGGAAATGCGTCCTCACAACTT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TGAAAGGAGCATAATTGTGTTGGACACGGAAA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TCTGGCTTACGACAACCTCGTAGTTGGTCTCATCGACGG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC

>NZ_CP040505|9|1|226208-230030|CRT
TACTTGATGCACCTTATGGCGCGAGGTGCTGTCTGAC	AAAGTCGCCCTTTAGCTTTGAGCGAATTTCTTTCTCG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CGCAGCGTGAATAAATCGCCGGAAGGTCTGGCGTCCC
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GATGACAACATCTCTGAAGGGCGCTTCCCTCTGG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CTCACGAAAGAGACTCTTGAAAGCATGCTCGCCAAC
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCCGAC	ACGAAGCCCGATACGCCTCCCAATCACCCCAAGT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GATACCAAGCCTGAGTTTCTGGCAATCGGCCGGAATT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GCCTAAAGAATCCTGTCATCATACCCTTGAAAGAGGG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CACAGAAAAATACTCTGTAAAACCGCTGGAAATCCCGG
GTCTTAATGCACCTTATGGTGCGAGGTGCTTTCTGAC	GAGAGAAAGGAAGATCACGGTCATGTGGATCGATC
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GGTCGCCCCCAGGGTTGAGCTAAGTTTTCCGGTCGTG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CCAGCCGCGATGACACGAACGAACTCGTCTGGTGGAGT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GTAGGATTTGGGCACTTGATGTCGAATACGGGAACG
GTCTAAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TATATACAATCTCGGTGGTGTGTAAACACTGCCAGAA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GAGTAATCACCACGAAATTCGACGAGACTGACCTTAG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CTCTCTCGGTTCACGACCATGCTTACGGTTTCG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CTGCGGTACGCGTAGGTGAGGGTCGCTCCGCCGCC
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CGACGTTGTATCGGTCGAAATCCGAAACTAAAGGAGTCT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GTGTATGACCTGAGTCTCCAGGTCAGCGCGCCTAC
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CGCGACGTGAACAGCTACCTATATGATCTAGGGGTCT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCCGAC	ACGAAGCCCGATACGCCTCCCAATCACCCCAAGT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TGATCTCCCACATGCGACAACTGATCTCCCACA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TCGTGGCTCGTAGCAAGCGCGGGTTCGGGTCGATCA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GCTCAACAGAGTGAAAGTAGCCCTTACATAGGAAGG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	AAAGCAACCTCGCAGGGGGTCATCCTGCTTGAGGT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GTCGACGTGCGCACGGATGATGTCGAAATCGACG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CGATCGGCACGCCCTACGTATGGGGCGGCGTCGACGT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	AAAAATGAAGGTGAGGTTCACCTTTATTAATGGCAA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GAGCTGGGACCGGAAGTTTGGTGCCCGGTACGATCGCACCGA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GAGAGAGAAAGGGGGCGATTCGCTTGGCAAAGGCGA
GTCTCAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GACATTGGCATCGATGTCAAACTCCACAAGATCGGAG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GTCACGGAGGAGCAGTACCACCAAATCCTAGGAG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GCAAATCAGGCTAGTGCTTACAAAGATAGACAGACAG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TTTGCTGACGGCAGCAAACGTGTCGTGGTAA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TAAGACGGCATCCATGAGGAGCGCGCCCGCTGAAA
GTCTTAATGCACCTTATGGCGCGAGTTGCTTTCTGAC	ATGAGCTCGCTCAAGCAATTCTCATTGGCGACGGT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	AAGCGATCAACCGCTACCTCGAGCGCCTCATGAACA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	AGAAGAAAAATGGAAACTTACACTGGAGAGACTGC
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TTGAAGTAGAGGGTGCCCATGGCTCTTCCTCCTCGGTG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TCAGAAAGGACACTCCGATGGCACGCAACACCAAACTT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CTCCCTAATGCCTACCTGGACTAACAGATGCCAGC
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	AGCGGAGCGGATGTCATATACGTTAACGCAATGTCT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CTCCAACACCATCAGGAGATCCTGTGGTGTTT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TGTGGTGAGGGTAGTGGGTAAAGAAGCGCCGGCACGT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	AGTGGGTCCCCGGCGCCCCCAATATCCCCGTCTAC
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TTTGGGCGCACAGCGCGGACAACGTGGTGGAGATC
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GAGATGAACGCATGACCAAGCGCGAAATCCGGACC
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CTGTGTACAAGGAAATCTTGGAAGGTAAGGTATCTA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GCGATGAAGCGCGATTCGATGGAGTGGGGTTTAGA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TGATATGGGAGCAGGATCACGGTTCAAAAAGTGTGA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	AATGTGGAAACGCAGGAAATGCGTCCTCACAACTT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TGAAAGGAGCATAATTGTGTTGGACACGGAAA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TCTGGCTTACGACAACCTCGTAGTTGGTCTCATCGACGG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC

>NZ_CP040505|9|1|226210-230030|PILER-CR
CTTGATGCACCTTATGGCGCGAGGTGCTGTCTGACAA	AGTCGCCCTTTAGCTTTGAGCGAATTTCTTTCTCGGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACCG	CAGCGTGAATAAATCGCCGGAAGGTCTGGCGTCCCGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGA	TGACAACATCTCTGAAGGGCGCTTCCCTCTGGGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACCT	CACGAAAGAGACTCTTGAAAGCATGCTCGCCAACGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCCGACAC	GAAGCCCGATACGCCTCCCAATCACCCCAAGTGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGA	TACCAAGCCTGAGTTTCTGGCAATCGGCCGGAATTGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGC	CTAAAGAATCCTGTCATCATACCCTTGAAAGAGGGGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACCA	CAGAAAAATACTCTGTAAAACCGCTGGAAATCCCGGGT
CTTAATGCACCTTATGGTGCGAGGTGCTTTCTGACGA	GAGAAAGGAAGATCACGGTCATGTGGATCGATCGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGG	TCGCCCCCAGGGTTGAGCTAAGTTTTCCGGTCGTGGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACCC	AGCCGCGATGACACGAACGAACTCGTCTGGTGGAGTGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGT	AGGATTTGGGCACTTGATGTCGAATACGGGAACGGT
CTAAATGCACCTTATGGCGCGAGGTGCTTTCTGACTA	TATACAATCTCGGTGGTGTGTAAACACTGCCAGAAGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGA	GTAATCACCACGAAATTCGACGAGACTGACCTTAGGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACCT	CTCTCGGTTCACGACCATGCTTACGGTTTCGGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACCT	GCGGTACGCGTAGGTGAGGGTCGCTCCGCCGCCGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACCG	ACGTTGTATCGGTCGAAATCCGAAACTAAAGGAGTCTGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGT	GTATGACCTGAGTCTCCAGGTCAGCGCGCCTACGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACCG	CGACGTGAACAGCTACCTATATGATCTAGGGGTCTGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCCGACAC	GAAGCCCGATACGCCTCCCAATCACCCCAAGTGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACTG	ATCTCCCACATGCGACAACTGATCTCCCACAGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACTC	GTGGCTCGTAGCAAGCGCGGGTTCGGGTCGATCAGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGC	TCAACAGAGTGAAAGTAGCCCTTACATAGGAAGGGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACAA	AGCAACCTCGCAGGGGGTCATCCTGCTTGAGGTGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGT	CGACGTGCGCACGGATGATGTCGAAATCGACGGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACCG	ATCGGCACGCCCTACGTATGGGGCGGCGTCGACGTGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACAA	AAATGAAGGTGAGGTTCACCTTTATTAATGGCAAGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGA	GCTGGGACCGGAAGTTTGGTGCCCGGTACGATCGCACCGAGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGA	GAGAGAAAGGGGGCGATTCGCTTGGCAAAGGCGAGT
CTCAATGCACCTTATGGCGCGAGGTGCTTTCTGACGA	CATTGGCATCGATGTCAAACTCCACAAGATCGGAGGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGT	CACGGAGGAGCAGTACCACCAAATCCTAGGAGGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGC	AAATCAGGCTAGTGCTTACAAAGATAGACAGACAGGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACTT	TGCTGACGGCAGCAAACGTGTCGTGGTAAGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACTA	AGACGGCATCCATGAGGAGCGCGCCCGCTGAAAGT
CTTAATGCACCTTATGGCGCGAGTTGCTTTCTGACAT	GAGCTCGCTCAAGCAATTCTCATTGGCGACGGTGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACAA	GCGATCAACCGCTACCTCGAGCGCCTCATGAACAGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACAG	AAGAAAAATGGAAACTTACACTGGAGAGACTGCGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACTT	GAAGTAGAGGGTGCCCATGGCTCTTCCTCCTCGGTGGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACTC	AGAAAGGACACTCCGATGGCACGCAACACCAAACTTGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACCT	CCCTAATGCCTACCTGGACTAACAGATGCCAGCGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACAG	CGGAGCGGATGTCATATACGTTAACGCAATGTCTGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACCT	CCAACACCATCAGGAGATCCTGTGGTGTTTGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACTG	TGGTGAGGGTAGTGGGTAAAGAAGCGCCGGCACGTGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACAG	TGGGTCCCCGGCGCCCCCAATATCCCCGTCTACGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACTT	TGGGCGCACAGCGCGGACAACGTGGTGGAGATCGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGA	GATGAACGCATGACCAAGCGCGAAATCCGGACCGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACCT	GTGTACAAGGAAATCTTGGAAGGTAAGGTATCTAGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGC	GATGAAGCGCGATTCGATGGAGTGGGGTTTAGAGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACTG	ATATGGGAGCAGGATCACGGTTCAAAAAGTGTGAGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACAA	TGTGGAAACGCAGGAAATGCGTCCTCACAACTTGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACTG	AAAGGAGCATAATTGTGTTGGACACGGAAAGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACTC	TGGCTTACGACAACCTCGTAGTTGGTCTCATCGACGGGT
CTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005962373.1|232652_234797_-|hypothetical-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl|CDD|274902
NZ_CP040505.1|WP_005962367.1|242654_243107_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_051057803.1|235313_236816_-|hypothetical-protein	csm3gr7	cd09683_csm3gr7_CAS-III-A:CAS-III-D	gnl|CDD|224256
NZ_CP040505.1|WP_040313553.1|243162_244800_+|hypothetical-protein	unknown	unknown	gnl|CDD|131167
NZ_CP040505.1|WP_040313554.1|224930_225959_+|class-II-fructose-bisphosphate-aldolase	unknown	unknown	gnl|CDD|236406
NZ_CP040505.1|WP_005962388.1|212701_213499_-|exodeoxyribonuclease-III	unknown	unknown	gnl|CDD|197320
NZ_CP040505.1|WP_005962383.1|219830_221072_+|N-acetylmuramoyl-L-alanine-amidase-family-protein	unknown	unknown	gnl|CDD|227588
NZ_CP040505.1|WP_131247179.1|230322_232338_+|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|376633
NZ_CP040505.1|WP_005962372.1|234798_235317_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962368.1|240418_242662_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962381.1|221932_222757_-|HAD-family-hydrolase	unknown	unknown	gnl|CDD|319832
NZ_CP040505.1|WP_005962389.1|211548_212364_+|serine-hydrolase	unknown	unknown	gnl|CDD|365903
NZ_CP040505.1|WP_131247279.1|224136_224787_+|TrmH-family-RNA-methyltransferase	unknown	unknown	gnl|CDD|349969
NZ_CP040505.1|WP_005962370.1|236818_238609_-|hypothetical-protein	csm3gr7	mkCas0198_csm3gr7_CAS-III-A:CAS-III-D	gnl|CDD|187857
NZ_CP040505.1|WP_131247181.1|214094_216227_-|DUF2339-domain-containing-protein	unknown	unknown	gnl|CDD|378390
NZ_CP040505.1|WP_005962384.1|218053_219169_+|N-acetylmuramoyl-L-alanine-amidase-family-protein	unknown	unknown	gnl|CDD|227588
NZ_CP040505.1|WP_040313789.1|232334_232616_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NZ_CP040505.1|WP_040313555.1|221216_221786_-|orotate-phosphoribosyltransferase	unknown	unknown	gnl|CDD|234771
NZ_CP040505.1|WP_005962369.1|238605_240258_-|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	gnl|CDD|187811
NZ_CP040505.1|WP_005962379.1|223577_224078_-|PH-domain-containing-protein	unknown	unknown	gnl|CDD|367615

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP040505.1|WP_005962373.1|232652_234797_-|hypothetical-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	1e-50	168.1	0.0
NZ_CP040505.1|WP_040313789.1|232334_232616_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	8.5e-24	78.3	0.0
NZ_CP040505.1|WP_051057803.1|235313_236816_-|hypothetical-protein	csm3gr7	cd09683_csm3gr7_CAS-III-A:CAS-III-D	9.2e-24	78.8	0.0
NZ_CP040505.1|WP_005962370.1|236818_238609_-|hypothetical-protein	csm3gr7	mkCas0198_csm3gr7_CAS-III-A:CAS-III-D	2.7e-15	51.1	2.0
NZ_CP040505.1|WP_131247179.1|230322_232338_+|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	3.4e-87	287.1	0.0
NZ_CP040505.1|WP_005962369.1|238605_240258_-|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	3.3e-95	314.2	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005962373.1|232652_234797_-|hypothetical-protein	gnl|CDD|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	1.43012e-43
NZ_CP040505.1|WP_051057803.1|235313_236816_-|hypothetical-protein	gnl|CDD|224256	COG1337, COG1337, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	7.70824e-09
NZ_CP040505.1|WP_040313553.1|243162_244800_+|hypothetical-protein	gnl|CDD|131167	TIGR02112, Protein_ybgE., cyd operon protein YbgE. This model describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria. [Energy metabolism, Electron transport].	0.0060326
NZ_CP040505.1|WP_040313554.1|224930_225959_+|class-II-fructose-bisphosphate-aldolase	gnl|CDD|236406	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional.	0
NZ_CP040505.1|WP_005962388.1|212701_213499_-|exodeoxyribonuclease-III	gnl|CDD|197320	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Escherichia coli ExoIII, Neisseria meningitides NExo,and related proteins. These are ExoIII family AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiencies. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity. For example, Neisseria meningitides Nape and NExo, and exonuclease III (ExoIII) and endonuclease IV (EndoIV) in Escherichia coli. NExo and ExoIII are found in this subfamily. NExo is the non-dominant AP endonuclease. It exhibits strong 3'-5' exonuclease and 3'-deoxyribose phosphodiesterase activities. Escherichia coli ExoIII is an active AP endonuclease, and in addition, it exhibits double strand (ds)-specific 3'-5' exonuclease, exonucleolytic RNase H, 3'-phosphomonoesterase and 3'-phosphodiesterase activities, all catalyzed by a single active site. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes ExoIII and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily.	6.07189e-105
NZ_CP040505.1|WP_005962383.1|219830_221072_+|N-acetylmuramoyl-L-alanine-amidase-family-protein	gnl|CDD|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	1.92057e-28
NZ_CP040505.1|WP_131247179.1|230322_232338_+|CRISPR-associated-endonuclease-Cas1	gnl|CDD|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	7.18325e-97
NZ_CP040505.1|WP_005962381.1|221932_222757_-|HAD-family-hydrolase	gnl|CDD|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.515e-116
NZ_CP040505.1|WP_005962389.1|211548_212364_+|serine-hydrolase	gnl|CDD|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	1.50658e-26
NZ_CP040505.1|WP_131247279.1|224136_224787_+|TrmH-family-RNA-methyltransferase	gnl|CDD|349969	cd18096, SpoU-like, SAM-dependent rRNA or tRNA methylase related to SpoU. RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	2.83433e-57
NZ_CP040505.1|WP_005962370.1|236818_238609_-|hypothetical-protein	gnl|CDD|187857	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily proteins.	4.88803e-06
NZ_CP040505.1|WP_131247181.1|214094_216227_-|DUF2339-domain-containing-protein	gnl|CDD|378390	pfam10101, DUF2339, Predicted membrane protein (DUF2339). This domain, found in various hypothetical bacterial proteins, has no known function.	0.000185317
NZ_CP040505.1|WP_005962384.1|218053_219169_+|N-acetylmuramoyl-L-alanine-amidase-family-protein	gnl|CDD|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	2.17755e-41
NZ_CP040505.1|WP_040313789.1|232334_232616_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.53988e-24
NZ_CP040505.1|WP_040313555.1|221216_221786_-|orotate-phosphoribosyltransferase	gnl|CDD|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	2.64402e-66
NZ_CP040505.1|WP_005962369.1|238605_240258_-|hypothetical-protein	gnl|CDD|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	7.12554e-05
NZ_CP040505.1|WP_005962379.1|223577_224078_-|PH-domain-containing-protein	gnl|CDD|367615	pfam03703, bPH_2, Bacterial PH domain. Domain found in uncharacterized family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices. Members of this family have a PH domain like structure.	2.01874e-15

Protein sequences

>NZ_CP040505.1|WP_040313554.1|224930_225959_+|class-II-fructose-bisphosphate-aldolase
MPIATPEVYAEMLNRAKAGKFAYPAINVTSSQTVTAAIQGFAEAESDGIIQISVGGAEYASGSTIKNRVTGSLALAAYATEVAKNYGVTIALHTDHCAKQNIDSWIRPLMEIEAEQVAKGGLPTFQSHMWDGSAVPLDENLEIAKEMLELSVKANTILEVEIGVVGGEEDGVVGEINEKLYTTTEDALKTVEALGMGEKGRYLTALTFGNVHGVYKPGHVKLRPEILGTIQEEVAAKIGWKDNRPFDLVMHGGSGSTADEIALAVANGVIKMNVDTDTQYAFTRPVVEHMFRNYDGVLKIDGEVGNKKMYDPRSWGKSAEAGMAARVVEACQRLGSVGTKMA
>NZ_CP040505.1|WP_131247279.1|224136_224787_+|TrmH-family-RNA-methyltransferase
MSDETTPLGPINEGGASCGVGPWEGPVPEDPRYDPELLALGDRRNVEDHYRYWTMDAIREDLKRRSLPFEVAIENLGHDFNIGSIVRTANALGAARVHIVGRRRWNRRGAMVTDRYLEVDHVDSAQALADSCTSRGLVLVGVDNVPGSLPLESTELPRRACLVFGEESNGLSEEMIDLCECVVKISQRGSTRSMNVGHAAAIVMWEHARKLSAEQE
>NZ_CP040505.1|WP_005962379.1|223577_224078_-|PH-domain-containing-protein
MAQLLSKDEIVVRHMRTHIKAVLGNIIAEILLLAGGILATVYMPPEWEPFSLAFVWAIVLVATLPLFLVPVLRWASSTYTLTSKRVITRHGILNRRGHDLPLSRISDVASERDLVDRLFGCGTLTLQTSSDDPLVLHDIPKIDYVQLEVSNLLFDDVQGAVDADPE
>NZ_CP040505.1|WP_005962381.1|221932_222757_-|HAD-family-hydrolase
MTIMNNAPKPLAEMPPVAAWLSDMDGVLVKENRALPGANEFLDALRHTNTPFLVLTNNSIFTNRDLSARLANSGLDVPEESIWTSANATAAFLAQQSPRSTAYVIGEAGLTTALHGAGYVMTEQDPEYVVLGETRTYDFNSLTRAIRLIEGGAKFIATNPDVTGPSDEGTLPATGSIAAMITAATGKRPYFVGKPNPVMIRAGLNKIGAHSEHTAMVGDRMDTDVQAGVEAGLRTHLVLSGSTSREQIKDYPYRPFGVHEGIGELVELVKAHIG
>NZ_CP040505.1|WP_040313555.1|221216_221786_-|orotate-phosphoribosyltransferase
MTNDSHKARLSALVKDLAVIHEKVTLASGRESDFYVDMRRATLHHEAAPLIGHVMLDLLEEAGFAPGEDYVAVGGLTMGADPVAAAMLHAAASRGLNLDAFVVRKAAKDHGMKRRIEGPDVKGKRVVVLEDTSTTGGSPLEAAKALQEAGAEVVAVAVIVDRSTGAKERIEAEGFPYFHALGLEDLDLA
>NZ_CP040505.1|WP_005962383.1|219830_221072_+|N-acetylmuramoyl-L-alanine-amidase-family-protein
MKLLPNSAFTGAVLCTALFSLTSFAGTAMASPSADSSTPEGEWTQSSLEPSGKSSLVDPDDEVTEDLTQSSDHQAKYAPRSSFAPVNGPENANPANDDVADDAVVGEEVQAGPQQGSAQHPMEVEDGTWVVDNGRWKYRNQDGTFLTSRWATIDADVYCFDASGFIRTGWYKEDGSWYRLAATGQRLGGWHTEEGIWYYLDPDSGEMITGPIMSGGAEYYLHPNGVMATGWVHHAHRWHFYSASGAGVRGWVSDRGMWYYLDPQTGVMQTGSITVDGADYYLQPTGEMATGWVHHADRWHFYSASGAGVRGWGSDRGMWYYLDPQTGVMQTGSITVDGADYYLQPTGEMATGWVQHSDGWRFYDLSGVKRTGWIQWGYSWYYLQPGSGVMLAGTTQVIDGQPHTFMPDGKWVG
>NZ_CP040505.1|WP_005962384.1|218053_219169_+|N-acetylmuramoyl-L-alanine-amidase-family-protein
MSAVTRSFGRSLLRVAILLFVVVAMVIPSQANATPGGQMLPVDGEDQLDAQSVQSEDPSLAPQEIVSPDAQDSRATRTLSVTVKLPAGTNPQWLANAYASLIPVHSYPGAPHPSKKINPSTGHVTMTGIPSGQYRLAIDFRKDITLDGNWFSTSSALIYYPGTMFYWQEAQIIDLEPQPEATVAVNVPQDAINTYYSYPNGVPSADGTGRWIQSVHDWIFTDNNWNAYTGWHFVDGYWYWTTGDASLARGWHLIWGKWYFFQEGTTRMHIGWHQEYDGTWYYLGSNGAMVTGWAWIGGTWYYFHGNGAMATGWAWIGGSWYYFHSGGAMATGWAWIGGSWYYFHSGGAMATGWVKIGGTWYYFSPSGAWLY
>NZ_CP040505.1|WP_131247181.1|214094_216227_-|DUF2339-domain-containing-protein
MMPSLKDASSSRLIVLLLSGLAALLVILAATSLIALLWDSIPNWVKVLTLGLVAIAMTASGALWHKREAHPSIPPATLTGIGTGLGYLTGIGAALLEVLPPIGAFLVLLVWTIATTALATLSKMPFTLIATAIGGVLTLSLLYSHALGHPSQALLVEGLILAYSAACLVSSTIASRPLHGAFKRWTIASSAAATVPALLFVPVEAASKQSSLGTYIMSIALAVLALVTVAFLVREPEQREWQWVWTLAPLVVIISYLSLTSIAATEEERLFLSLVHFLLCLGLIGFAATPKLSGPVKGLAEYALLAPPIFLPLLDEVGVAPITTASYKTLVDCAAWFVILACAALATQQRSSSFLVILPIVALYRGFDFTMETFSVVFIILTLLIATVLIDRALKALPWQRAFAMWLGIFGLIFKVPWEIVSQIPKHSTYRNALEVSVIFLVFLVVALLLILGLATPNIGPADLWMGRRLIFSSTAGDSAATSRTTSFSPASPAPMSAAPATGFGQPPGMPRRESGGVFAPLSVLMTLFFVSSVTYILPLMLLSSVWNFLFGLPSASSTPLDLVVSLGMLILALAFVLAMKSYATHSLYGILIPLVLVSVVWQAFNVIRALDNAPWVATLMVLLVGAAAIVLGFRWKAPNMRLTSLVIVIIAVFKLSLIDTGFNDSISRVLSLLIAGLICFALSVLYSKLSAKARAKETLPSTDFVTPGS
>NZ_CP040505.1|WP_005962388.1|212701_213499_-|exodeoxyribonuclease-III
MKFATWNVNSIRTRVDRVIAFLERSEVDVLAMQEIKCTPEQFPIEPFTAAGYEVAIHGLNQWNGVAIASRLPIVKVQDHFADQPGFGEPKVVEARALGVTLRGENEKETCIWSLYVPNGRELDHPHYAYKLDWLRKLRSDAQSWLAADPKARIAMVGDWNVAPFDEDVWDMSAFDGATHVSEPERQAFFAFAEDGWTEVTRDRVTNYTFWDYQRLRFPKNEGMRIDFVYASPALAPSVSAAQIDRNERKGKGASDHVPVIITLKD
>NZ_CP040505.1|WP_005962389.1|211548_212364_+|serine-hydrolase
MEGATVALSIDIPFTHALALWAGGETIHEQGDLSKRYPLASVTKLCTAWSALVAVERGLCLLDDPAGPEGSTIRHLLAHASGLPYESREPQFSVAKRRVYSNAGFEILGDVLEEASGSPIERWIEEAVFEPLGMTTAELVGSPAWAGVASVEDLLILGREMLEPTLISPELAQEAMTPQFPELVGVVPGYGRHAPCPWGLGIEIRGNKSPHWTGPSFPAGTVGHFGVSGSFLWVDRTHGATCAFLGTEKFGAWHKEHWSTMNEELLALILR
>NZ_CP040505.1|WP_131247179.1|230322_232338_+|CRISPR-associated-endonuclease-Cas1
MESAPRRTPTPPMRPRTAGYFFGQPLYRLRSAMNTTGEETKLSPVFLQISSVETLERAWQSVLARDAQDGVLQRQSKRIIENADEFLNQLSALLRNGTYEPEPLNRVDIPKGEHGKTRTLNIPTIHDRIVERAIVDTIAFTADLVQSSCSFAYRTGIGVDDAVHHVATLREEGYQYVLRTDIEDFFPHVNLEHALEALPESLQERDLLALLRIVALPRRAHGQRRARSRGVAQGSTLSPLLANLSLTRFDHDICDAGYGYARFADDIVVCSPREQDILDAIELLSDLAAAHGLKLNQDKTIMTTFDEGFCYLGVDFTRTRPDADPYHDIKGQPDPDHVIYVGRDGARVHVTKGRLIVDGTDGLPQMSIPQRSVSRIVLTGSVGLSAGARSWALYNDIDVLCLSRRGTYLGQLAGPRSTVNARRLLAQAAFSDDEEQRLPLARSIVKAKLRNQVHVLNRIGRRDTRTDVKSAAQELRNLAEELTHADSINEIMGLEGAASTDYYTALSSLVPEDVAFQGRSRRPPRDLANAALSYCYAILLGECTGALFAAGLEPSLGILHSSTDKRPSLSLDLMEEFRPLLVDSTVMALLRTHRLRPEHATSAPGDEDGVWLNREGKKIVVDGYEATMQRHVKGALPGFTGTWRRHIHHEAQLLGRAIMEPDYTWTGVAWR
>NZ_CP040505.1|WP_040313789.1|232334_232616_+|CRISPR-associated-endonuclease-Cas2
MTYIVAYDIAANGRRNRVAHTLQSWGYRIQESVFQLRLEAADLDLVRQKLESIIDSMDDVVHIYPVCTGCAARAEILGTAVALDDVGLYRGLW
>NZ_CP040505.1|WP_005962373.1|232652_234797_-|hypothetical-protein
MSDFEPFHSAVNRVPIPRTSVLGYVERDFLPSDVFGEETPTGHDHLRADRWSGSLDVEMTVRTPLVFGEQTEDDQGRPSVEVPIDADRHPVVPGTMVKGMISRAYELFTASRFRIFGDHAEALTYRSDPAEALSLLPGRICEYEGGLGVEILDGLGKTGKTVALIKDDDADKGGVSIQRDGHPTIRLNPGSTQPTQQQVLARFRSLTRHGSQVEVQLSRWRGEKGPEHLMVTGVWVDDQLEEFFQVPPHLNPKKLNVWGYPCRTSPEKKHAGDLFSEKKYERFFFKTDHTGKSLDGVVLSLTQDHIDRYDAVIRSYQEQHDRPGGDVHLLNRAASENSNLAPGILVFVNLDRDSSQHGTPSRIDRVVDVYPTMVGRRSYRMSPRALAQAQRVLPVSRAEEASPADRLFGYVVGDAPSGARGGDVSSKGRLFFGAVDTDDVEPLREPRRLAPLLAPKLSSARRFLTTRSGATPAQEKDQFLPRSEYYSEGQFLGAAVYPVHRELVDSQSFPEEKTQNTTVDQSNEKVRMTAKSWIAPGSIMRCRIRFEDLTSNELAVLVWLLTPENLVPASEKGTDRVGYLRMGLGKPYGLGVLEVRLAEDGLRAVRAGGDSGLAAMYRDLSGCLGTAETVHAAEDFILDKEGVLRKTPWIQALQRAAFGYSDGKPVRYMSLEENRSNNRTDSKTGRPQPGCGIAPRDMFGDDAAVPLKISRSKK
>NZ_CP040505.1|WP_005962372.1|234798_235317_-|hypothetical-protein
MSTYSNSSTLSQKRLTRASWQCEPLNGDARLVLERIESGPDTRWYGIASTTVGALSVVADKSGLRACGGQSIDLATMYELRLWVPSFALEAHGHGLWARELRWLNGSHVVDLRVFSDPSKGEVCWCRAGEYVQHSPGGVPVSATMPTVEVFCEEQLYSNVVFVDELMTGKWA
>NZ_CP040505.1|WP_051057803.1|235313_236816_-|hypothetical-protein
MSLMRYWFSATLVTTSPLHSSGLDEEVDRTPDFDQERTAVPRSFSRTVDGIPSLSGRSVKGALRSAMTRCFPSEEERFKPLWGSLDAASPLTIHPIALSDVCTGENLLLRDGIAVDRYWGTAGHGALFQHEVAPAGVPLLLSISAQASSRPDIEGGVSPRLVEDFFAYLSALLDTDRLAFGGRRSVGWGRVKLKDDTQVSCRCADLGSRKGLIALHRGGDDIELDFVPRPPASDRISIDIAWTSPSGILIANGALRDEGDPDAPEITRPLHMNDADSPFVIPGSSIRGALRARCSRIARTIIADGDELQIDDWADLEVHEQLRRDPVLVRILFGDTGVKGALSVLDTLSQGRSSKRQTHNAGDRFSGGVVDGLLYTEEIPGDGWNEIRLEIDTDLLARLDSPDQEPDYSRAALCLLGLALAELASGALPIGSRGTRGLGEVRVKTLNVDGPEELIGQPWRISSMGDPRGTAEEILTRLRGINELLPSGGWSLYLHEGNGQ
>NZ_CP040505.1|WP_005962370.1|236818_238609_-|hypothetical-protein
MTRSFFIDIDMDSNWGIATGAGVVGGIDSVIERDRQGQPVLRGTVLTGILREKAQVAAIALDDGEPCGPWSNLCARIFGSAEAARLITFTDAVATDPVETSELVSVSIDSQTQTAKDDHLRFFERAGAAHLRAEVVCCRLTTGGARVAWTDAQLADVELLLAVACGIVEAVGSDKSVGDGSCRMRLKTVGHPQGWPWNALESASRTPTIPTIDAIPAAKITDSPQTDETGFFTAPLDIDLLSPVISYETPFSNEVRSLDFLRGTTLLAWAHRQMRAAHPDDDIVSNAVTSGDLRISDAIAVIDEVPGLPVPFSLSRSKDSSGLDHFSTWNHLRGESGLESQVPIRRGFLYGMGEAWRIASTPMTARQSSAHDPMTGTAQSGQLYLVHALSPGLRLRAELVVSNRLRERLPDLEELLSVDALLGARRLSGTFGSAHCSLGPLSPLVTPSASWDEDGTTTLWLASDLVLRSSSLGPTRGIQDFLDALAAVGAQVMVHTEDGAQAMALRYRRIDSRASDAAIRSTRIAMQAGSVLRITPAEEADPSAVLTALRRMARDGLGELRAQGYGRVLVAHPFLSLSSIALSTCTREAFLNRKES
>NZ_CP040505.1|WP_005962369.1|238605_240258_-|hypothetical-protein
MYLVMFETHGNQRYVFASPRLKENIGASYLLTLLEPWVRSTSQHERIPILDVSVSSGKVIVAVDSEKDAHSLVNAVTRKILETAPGVDVTGVFTPMISVHVTKEDLENVHAASARHALMRPPTSARFCSTPFLEPGRDTLLPAVPSRVGFPSGEVYSLPGTVARAQASKAREYLLGLASTHPYLSERSEELLPDPDALEKALDSLSKVAVIHLDGNGVGAMVRGLADRLSSIPVSIFQEQIKCDASDADALRLSLLKLNKRLDNVMKDAFCDAWAAVADLAIQEGIDVVPVVPVILGGDDATVITDGAFAIPFAVAFLEAFEERTGADPFISSLSDDGKMTAGAGVAVVRHNFPFHLAYDLAERLASTAKTAGKRMDESCSTLSYHILYDSTVLDPEELLASYTPFTNEAETAQSVPAMTSRPYRILARKELSIPLPPPTMNESWDAMRLRAAWFAGILSAPGASIPMRFPKSRAARIRKILSDAVHLSGREQRSHLAKARSEWDDARSQRDLKVLVDAIGSERLMLDLIDLAEILPRTYLVASAPEELS
>NZ_CP040505.1|WP_005962368.1|240418_242662_+|hypothetical-protein
MALLIHIAGDSDLGIARGGLHPYERRRIQKGRLNELEELSDPEQIARRLLEMNYDVAVEEKRRGVDVNPDQEQSTPMEKAFQGLKELKKTGPLQVLIVGTADGEGGTERIARVLARQLKELRSRCSIELGEVTPLVLRSLAEKDWLVEMEQAMQDSAAEGEVILPIAGGSTAIVLGVAGAAIASGRDLSMLLAKLQPEQLHPRKSQQAQLYPLKISADPIRGWLLGLGLPTLLGDEYQDDGQVRQAAASVERAFAEKVTVDQRADALGQLLLMDVARGDLAAGMSIRAWHDAEMKRPNDQGGSKCLMSAALEEAGKSATHDFAALMDGEAAEKTRLRVLAAVGVHAVPDFLSWPNEHVCLICSVGTNRQQDDRGDFASNLMKTVPPEEIRLACSVAGEFRLHTVLLASQDSADHAHNLKEKLESPSAANSRESSWAQPSAEVINYGTSAGGRETVEELTTLINNVSGEVRKSLDDRCPRPRAILVATLGEKETILPALSAAQNYGAQWGIPVFLVSTVKRNEEEFQFHQFGLHQDAREALLRAARYCMERLDLLSTYRLLTLGDQKMREHAEAAKSLAKALEEAVNAKQIDEHAARIADAYRVIAGFCQSSSDELLRARLATIAGELIFRGRSQDEPVILRRKKGDKSAVKTLKSATREQLLQIIYKVRTETALNHGKFTVDQALEDVLGKRISSTSLPTTTTYSDLLQAAVDKIQEAIEGKPESASSNWKQRFDELHGWIEGELNA
>NZ_CP040505.1|WP_005962367.1|242654_243107_+|hypothetical-protein
MHDDTPKTHRHASAAEQPQHARLVNLTPHQVLLETSNNDGELKRLILPPAEEVPRLVIASGQEAPVLVRTEGEDTEEIAIPVVKGTRASRIEPPLPTPQPGVLYVTSRALAEYLPERSDLVWPEDQIRDVNGNVIGARKLGRVGNKASAS
>NZ_CP040505.1|WP_040313553.1|243162_244800_+|hypothetical-protein
MSGDAAVAQGPGFIKIKDSSRMRMALILEMKSTLSWKDSFPLHLEGEEKSPQDATAATWKSGGVNFRTATAFSYPGKDKSELHPHVVDGILSPDVRRSFRLNTLRQHLNKDGICVLTIGALEVLQLKEEPGDLRVLLVVHTEVSCEDYSTVRDALHTRRMFHLLRNTLLKVLEEEAGCAEGTLSFPGRVKTDESAPPITTITWVPQERIAAWHTVSTVQEARELGLEVSPEIIDALKAENDFAMGANQGHACAPSISTALIIAGWQWGLMPASGGIELGDARFADSMRRLHSLSQSWAVYTTEHGIAYVEKQRTDYSVEAVRRMLTRNLNIHLLITLNQMRTLDLSRRLAALARDLRSTTNELGEDGASTKETQLDGLIDRALALDAEATAFLASEWWTDVTSHSQADQILVWMQEATGLDRSVNQVVQQARAIRESIQTLIERREHLIALERRKAELERQKMEQEQHYTSQMMEWAIGILTFIGMPLTILLEVWINWDPTISLTARSGPPWFVWLVLVILGAIGIGMVFALAFGIRLWRLPRRH

Crispr_ID: NZ_CP040505_10

• CRISPR_ID: NZ_CP040505_10
• CRISPR_location: 256278-256362
• CRISPR_type: TypeIII
• Repeat_type: NA
• Spacer_info: 1 spacers
• Cas_protein_info: cas6

Consensus repeat of NZ_CP040505_10

Consensus_repeat	Method
GGTTTTCCCCGTGGCTTGTGCGGG	CRISPRCasFinder

spacers of NZ_CP040505_10

>10.1|256302|37|NZ_CP040505|CRISPRCasFinder
GCTTTTGCGGCGCAGGACGGTGAGAACCCACACCTGC

CRISPR arrays and Neighbor proteins around NZ_CP040505_10

CRISPR arrays

The CRISPR arrays of NZ_CP040505_10

>merge|NZ_CP040505|10|256278-256362|CRISPRCasFinder
GGTTTTCCCCGTGGCTTGTGCGGGGCTTTTGCGGCGCAGGACGGTGAGAACCCACACCTGCCGGTTTTCCCGTGGCTTGTGCGGG

>NZ_CP040505|10|10|256278-256362|CRISPRCasFinder
GGTTTTCCCCGTGGCTTGTGCGGG	GCTTTTGCGGCGCAGGACGGTGAGAACCCACACCTGC
CGGTTTTCCCGTGGCTTGTGCGGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005962344.1|268184_268475_-|WXG100-family-type-VII-secretion-target	unknown	unknown	gnl|CDD|274862
NZ_CP040505.1|WP_005962343.1|268649_269606_-|hypothetical-protein	unknown	unknown	gnl|CDD|226789
NZ_CP040505.1|WP_005962350.1|261647_263036_-|L,D-transpeptidase-family-protein	unknown	unknown	gnl|CDD|227588
NZ_CP040505.1|WP_040313552.1|244819_245644_-|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	pfam10040_cas6_CAS-III:CAS-IV	unknown
NZ_CP040505.1|WP_005962348.1|263498_264197_-|uracil-DNA-glycosylase	unknown	unknown	gnl|CDD|235376
NZ_CP040505.1|WP_005962358.1|252452_253205_-|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl|CDD|176505
NZ_CP040505.1|WP_040313551.1|249086_249794_+|metal-dependent-transcriptional-regulator	unknown	unknown	gnl|CDD|224240
NZ_CP040505.1|WP_005962351.1|260748_261342_+|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224228
NZ_CP040505.1|WP_005962341.1|271446_272157_-|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|223816
NZ_CP040505.1|WP_005962359.1|250115_251954_-|phosphoenolpyruvate-carboxykinase-(GTP)	unknown	unknown	gnl|CDD|235256
NZ_CP040505.1|WP_005962347.1|264580_265180_+|LytR-C-terminal-domain-containing-protein	unknown	unknown	gnl|CDD|379163
NZ_CP040505.1|WP_040313781.1|258862_259684_+|thioredoxin-domain-containing-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962362.1|247308_247812_+|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	unknown	unknown	gnl|CDD|179603
NZ_CP040505.1|WP_005962356.1|254943_256071_-|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	unknown	unknown	gnl|CDD|236947
NZ_CP040505.1|WP_005962363.1|245874_247056_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_040313553.1|243162_244800_+|hypothetical-protein	unknown	unknown	gnl|CDD|131167
NZ_CP040505.1|WP_005962361.1|247914_248940_+|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	unknown	unknown	gnl|CDD|184425
NZ_CP040505.1|WP_005962357.1|253240_254503_-|DUF4032-domain-containing-protein	unknown	unknown	gnl|CDD|379077
NZ_CP040505.1|WP_005962345.1|266150_267776_+|chaperonin-GroEL	unknown	unknown	gnl|CDD|234573
NZ_CP040505.1|WP_083879474.1|269686_271339_-|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl|CDD|223715

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP040505.1|WP_040313552.1|244819_245644_-|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	pfam10040_cas6_CAS-III:CAS-IV	4.8e-13	44.5	0.1

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005962343.1|268649_269606_-|hypothetical-protein	gnl|CDD|226789	COG4339, COG4339, Uncharacterized protein conserved in bacteria [Function unknown].	1.00379e-26
NZ_CP040505.1|WP_083879474.1|269686_271339_-|HAMP-domain-containing-histidine-kinase	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.43721e-59
NZ_CP040505.1|WP_005962350.1|261647_263036_-|L,D-transpeptidase-family-protein	gnl|CDD|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	1.54371e-31
NZ_CP040505.1|WP_040313553.1|243162_244800_+|hypothetical-protein	gnl|CDD|131167	TIGR02112, Protein_ybgE., cyd operon protein YbgE. This model describes a small protein of unknown function, about 100 amino acids in length, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It appears to be an integral membrane protein. It is found so far only in the Proteobacteria. [Energy metabolism, Electron transport].	0.0060326
NZ_CP040505.1|WP_005962348.1|263498_264197_-|uracil-DNA-glycosylase	gnl|CDD|235376	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.	9.26431e-122
NZ_CP040505.1|WP_005962358.1|252452_253205_-|glycerophosphodiester-phosphodiesterase	gnl|CDD|176505	cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), can only be hydrolyzed by UgpQ during transport at the inner side of the cytoplasmic membrane to alcohols and G3P, which is a source of phosphate. In contrast to Ca2+-dependent periplasmic phosphodiesterase GlpQ, cytosolic phosphodiesterase UgpQ requires divalent cations, such as Mg2+, Co2+, or Mn2+, for its enzyme activity.	1.26627e-92
NZ_CP040505.1|WP_040313551.1|249086_249794_+|metal-dependent-transcriptional-regulator	gnl|CDD|224240	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription].	1.76529e-42
NZ_CP040505.1|WP_005962344.1|268184_268475_-|WXG100-family-type-VII-secretion-target	gnl|CDD|274862	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target. Members of this protein family include secretion targets for the two main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from pfam06013. The best characterized member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have a long C-terminal extension.	1.21737e-09
NZ_CP040505.1|WP_005962341.1|271446_272157_-|response-regulator-transcription-factor	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.28321e-84
NZ_CP040505.1|WP_005962359.1|250115_251954_-|phosphoenolpyruvate-carboxykinase-(GTP)	gnl|CDD|235256	PRK04210, PRK04210, phosphoenolpyruvate carboxykinase (GTP).	0
NZ_CP040505.1|WP_005962347.1|264580_265180_+|LytR-C-terminal-domain-containing-protein	gnl|CDD|379163	pfam13399, LytR_C, LytR cell envelope-related transcriptional attenuator. This family appears at the C-terminus of members of the LytR_cpsA_psr, pfam03816, family.	4.03877e-12
NZ_CP040505.1|WP_005962362.1|247308_247812_+|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	gnl|CDD|179603	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI.	6.77376e-74
NZ_CP040505.1|WP_005962356.1|254943_256071_-|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	gnl|CDD|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	0
NZ_CP040505.1|WP_005962345.1|266150_267776_+|chaperonin-GroEL	gnl|CDD|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_CP040505.1|WP_005962351.1|260748_261342_+|TetR/AcrR-family-transcriptional-regulator	gnl|CDD|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	5.8931e-10
NZ_CP040505.1|WP_005962361.1|247914_248940_+|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	gnl|CDD|184425	PRK13965, PRK13965, ribonucleotide-diphosphate reductase subunit beta; Provisional.	0
NZ_CP040505.1|WP_005962357.1|253240_254503_-|DUF4032-domain-containing-protein	gnl|CDD|379077	pfam13224, DUF4032, Domain of unknown function (DUF4032). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 170 amino acids in length. The family is found in association with pfam06293.	2.56986e-88

Protein sequences

>NZ_CP040505.1|WP_005962356.1|254943_256071_-|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC
MATVTFEKATRIYPGNDKPSVDQLDLKIEDGEFLVLVGPSGCGKSTSLRMLAGLEDVNEGHIFIGDKDVTDVPPKNRDIAMVFQNYALYPHMTVRENMGFALKIAGTPKEEIAKRVEEAARILDLEPYLDRKPKALSGGQRQRVAMGRAIVRKPQVFLMDEPLSNLDAKLRVQTRTQIASLQRQLGVTTVYVTHDQTEALTMGDRIAVLKDGLLQQVGSPQEMYERPANEFVAGFIGSPAMNLGKFKVEGSTAILGPARIPLSAATVNALTAEDKGMITIGFRPEGLELVSETEANSIPIQVDFVEELGSDAFVYGHLAGTDGQGIGSAEEGSSKQLIVRVPPRTAPARGGVVYTRIIAGQQHNFSASTGMRLPE
>NZ_CP040505.1|WP_005962357.1|253240_254503_-|DUF4032-domain-containing-protein
MPTDFEIQATNVDPALLDLPWNLPLEEWPDSLLVALPRGISRHVVRFVQLNERVVAVKEIGAPVACHEYVMLRDLSRLNAPSVVPTAVITGRTDDNGEELNAVLITEHLQFSLPYRALFSRHMAPDTATRLIDALAVLLVRLHLLGFYWGDVSLSNALFRRDADSFSAYLVDAETGELHPKLTSGQRAYDVDIARTNIIGEFMDLQAGAFFPEEVDPIHIGDRICSRYKTLWNELTGIEMIDASQKWRVAQKIERLNELGFDVGEFNMSTVAGTSTLKIQPKVVDAGHHHRKLMRLTGMDVEENQAQRLLNDIQAFHTASGRPNSSLELSAHEWLNTAFEPVIAAVPPEFAGKLEPAQIYHEFLEHRWYLAESAGHDIPLDEAIASYVENVLAAKRDEALYIISESDAENPTPVANPDLW
>NZ_CP040505.1|WP_005962358.1|252452_253205_-|glycerophosphodiester-phosphodiesterase
MTALPRVFAHRGASSLAPENTIAAFSKAMEVGARWFEFDVDIIADGTLIVIHDNRLDRTTNGKGGYYTRSFSDIRRLDAGAWFSDTYRFERIPEAADAISFGNKQHMGMNLEIKPCRGGTQLRERLIEALAVAVDSVHDKDRFIVSSFDHELLAAFHEARPQISLGWLLDSEKQSTLGWQEGASALGCSAVHPDAKGLAKEEVWKIRDCGFDCNVWTVNDLEQAKELASWGVTGVFTDYPQLFPAEALAL
>NZ_CP040505.1|WP_005962359.1|250115_251954_-|phosphoenolpyruvate-carboxykinase-(GTP)
MNLTRIQRHLDESGVTNPAIRSFVEEWAQLTTPESIEIISAEDDARLIAEALDAEEIFPAGPGRYYTRSHPKDTARSEGRTVVATADPADKGVYNNWRPSKEVLAAQRERVAGALAGKTMYVIPYLMAVPGSPLAPFAAGVQLTDNRVVVMQMIRMARVGLHLFDDLADPSFFVRSVHVTGDLDALGQGTDEDQRLFATIADERLIIHYGSSYGGNALLGKIAHSLRQSAYDGWKSGKFLAEQFMLLGIVDKQTGRTYHVCGGFPSASGKTNLAMTLPPDALGERYRVEFYGDDITWLWVGEDGRLYGMNSENGVFGVAKDTNEATNPAALSAIQDNSGVLFTNVAYNERTQEVWWEGRTPEPPSDLEGWLDWTGKAISERSEEDKGLAWAHPNSRFATALDNVTTVAPDASSPMGVPIDAVIFGGRTRDREPLIRAMKDLAEGVYDGLTLGAEATFAAEGVEGQLRYDPMSMRPFMSYSEGDYAAHWLKILGNVTHAPIFAHVNWFQRDPEDGHFLWPGYRDNLRALLWLMDYQEGRVQGRRTPVGVVPNADELNREGLAISDEDLARLLTIDVERWRQEMGFRREHLAQFTNLPEEIEAVHERIETELRN
>NZ_CP040505.1|WP_040313551.1|249086_249794_+|metal-dependent-transcriptional-regulator
MVPSHLSASSQNYLKAVWTLGEWSDEPVTASTIAAKVGVRLSTASDAIRKLSDQGFLAHAPYGAVTLTDKGLAVAIAMVRRHRLIEAFLVETLGYRADQVHEEAEVLEHAVSDLLIERIDAHLGEPERDPHGDPIPRADGSLPALGAHSLAEFARSSSKGEVLRIERIADDDPELVRFLAEQGIVYGAEVILCEASPYSEAVALKLQGTDEELSFGLPAARSIWVGTIESQKAEN
>NZ_CP040505.1|WP_005962361.1|247914_248940_+|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta
MTTSTPRTPITERSITPPRYRRDPEARIRPINWNRVDDPKDHEVWNRLTSNFWLPEKVPLSNDLPSWHAMTQEERTLTMRVFTGLTMLDTVQATVGEISQIQDARTEHEEAVYTNIAFMQAVHARSYSSIFSTLCSSEEIDAAYEWAVDNDLLQRRAKTVLRHYYGDDPLKRKVSATLLSSLLLYAGFYLPLHFSVRAKLMNTADMIRLILRDKAVHGYYSGYKYQRGLEMRSEEKHKQMRDFTYTLLEELYELEMQYSGALYEPLGLMDDVAVFVRYNANKALMNLGYPARFAPEETEVKAEILAALAPGADENHDFFSGSGSSYVIGTAEETSDEDWEF
>NZ_CP040505.1|WP_005962362.1|247308_247812_+|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI
MTSTKRAELPVRELSYDESPDLVYFSSVSENTKRFVDKLDRPAVRIPLRPRLEGRLRVNRPYVLIVPSYGGGDKTQAIPKQVAIFLNDPHNRALLRGIITSGNTNFGEHYCIAGPIIAAKCHVPELYRFELLGSDRDVERVNIGLQHFWAEIEADDTSNAPPMNLRR
>NZ_CP040505.1|WP_005962363.1|245874_247056_+|hypothetical-protein
MEQDWTRIEGMIIGRDIDPALVATALREQAVLAQLEWFPSSPQLLGVNVALADGHVALVKDKKVAPGPTSEELAETLAALFECEVRIGSATADHLPEGESPLSDNWDEDDLDVEEPSSRIVEIGRTPASSVPLLAALEGIDLVSVELAEGRRALLAELPPEKAGWNFGDLPLVTLSRQDEEFQVFLVTDDHLEHVITHNWGMKTLLIAGAHESAGELDQEILDFVSDRPDLEAIAKAMPGADLDALIESTTSFGEDAVRRVVKALGLPAGLADFLLGALPASEVEGAEVHFARGVSNAIGRSVDIMLSDPESRAQPLWSTYQSVAVEKPGLVRALASAEAIVGTALLTLAARGEAPRSRWLKCGGFIGALLLVDSVAEVSLSSYLRRRHQDKE
>NZ_CP040505.1|WP_040313552.1|244819_245644_-|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MPSTVFVRFESPAPVPANPRRLHAAVSSVFDLPEGLSAARAASLPVFAHRPPHESAGPKPYCLGELSYADGLFGMEIRFLDDRLVDTLDAWLAWGGVLRIGSGGEDTVLLAAVDGQVIEHQSWEELAECTEDTTWEIHLVTPTVFSSRGQHVWGVSPASLATSLQERWWHTHRASAPGRVDREAMARVLTTYDETRQVPVSLGMPRSDRRGRLASRTIIACEGRMRVSGPAASPLTRVFSQLMALSRFTNVGSHANFGMGVIDSIAVDPGVQPD
>NZ_CP040505.1|WP_040313553.1|243162_244800_+|hypothetical-protein
MSGDAAVAQGPGFIKIKDSSRMRMALILEMKSTLSWKDSFPLHLEGEEKSPQDATAATWKSGGVNFRTATAFSYPGKDKSELHPHVVDGILSPDVRRSFRLNTLRQHLNKDGICVLTIGALEVLQLKEEPGDLRVLLVVHTEVSCEDYSTVRDALHTRRMFHLLRNTLLKVLEEEAGCAEGTLSFPGRVKTDESAPPITTITWVPQERIAAWHTVSTVQEARELGLEVSPEIIDALKAENDFAMGANQGHACAPSISTALIIAGWQWGLMPASGGIELGDARFADSMRRLHSLSQSWAVYTTEHGIAYVEKQRTDYSVEAVRRMLTRNLNIHLLITLNQMRTLDLSRRLAALARDLRSTTNELGEDGASTKETQLDGLIDRALALDAEATAFLASEWWTDVTSHSQADQILVWMQEATGLDRSVNQVVQQARAIRESIQTLIERREHLIALERRKAELERQKMEQEQHYTSQMMEWAIGILTFIGMPLTILLEVWINWDPTISLTARSGPPWFVWLVLVILGAIGIGMVFALAFGIRLWRLPRRH
>NZ_CP040505.1|WP_040313781.1|258862_259684_+|thioredoxin-domain-containing-protein
MPLNKPQDEVRLKAQQMREAQAKADRRTRMIIISIVLIVVLAVIATVAIVISNQVNKKNAAIDADPATTLGEYANGEPIVYSHLGVGKKDEALPTLTEYFDYSCHACADIDVALGHDLVEGAERGEYNLEIQPVTTVGMAYELPATSASLIVAREDPEHWISFHHALLSYFASQFNSGKGTVIQDLDKSWEQVKVIAKEQGVSEEVVAKLPPNVVEKYLEASTQAWRDAPIQGRGNLGTPEFVKDHSTEIPLSGSNAAEFLSVVRAAMGLKTE
>NZ_CP040505.1|WP_005962351.1|260748_261342_+|TetR/AcrR-family-transcriptional-regulator
MEIKVMKKSSEEQRRRCLDGVVNLWAETGKAFTMSELATYLKMSKKTLYVLFEDKEEMILSAIDQWFDKVKAAKMQILSDPDLTTVEKVRLVMIVQPEGYGPVATSSFTEFLSEHPRIHRHIVKRLQSGWEPIIEFLARGMEAGELRRVNISILRTIVEAAFEKLLSSKEATKDWEHSLEEMMDLIIGGLEPRGEGQ
>NZ_CP040505.1|WP_005962350.1|261647_263036_-|L,D-transpeptidase-family-protein
MAVSIRQAFRRSGTVIGLVLALIATPGVALADSLESPTPRPSSFEQPTPPNPGTSSPHEDSHPTAPSTSLPTAPSTSGASSEDGAETQVPENPQSGSGWVGEGAQRRYIDPETGLAATNKVRKIDGVVYAFNAEGFIVDGWFTSPEGEHYYSTPQGVRFGWFSLNSKWYYGDPAALGARVHGWLNEGGARYYLAPTGEMLTGWQNLDSDWYFFAASGAMRTGWLAQGSTWYYLSPSGAMATGWQAVGGYWYYLYSSGAMASGWLNDQGTWYYLNGSGAMYTGWLAQGSTWYYLKGSGAMATDWEGIGWKWNLFDHYSGAWITDRASFQYDWDRAKSLYSPTNYLILVDTSAVYCTGFYWRDGTWWPQHDWPCSVGAPSTPTITGTYSIGSRGHSFGNGFTAYWWTQIWGDYLFHSTLYYQGTLTPLDSRLGMHISHGCIRMRYEDAYWINHTIPSGTTVHLY
>NZ_CP040505.1|WP_005962348.1|263498_264197_-|uracil-DNA-glycosylase
MTDVSPKPLSALIDPGWAKALAPVEPKIHELGAMLRAEIAQGHNYLPAGTDVLRAFTYPFEQVKVLIVGQDPYPTPGHAMGLSFSVAPGVAIPRSLQNIFAELESDIGAPRPSSGDLRKWSREGVCLLNRVLTVRPGAPGSHRRRGWEEVTECAIDALVHRRDDAGNRLPLVAILWGKDAQTLEPRLEGVPIVKSSHPSPMSARYGFFGSRPFSRANALLESQGASPVDWAL
>NZ_CP040505.1|WP_005962347.1|264580_265180_+|LytR-C-terminal-domain-containing-protein
MSSQYPRDEFDLAGEDMPVGMHRPVPSRWKAVLPFLAILVIVPLLAWGASSYLTHRDTSNNNANSTPAQSGNQAQSADSQPMSTDQNQSTEEPQPQPSPAEQPQSTPPEPIVDHNVKISVLNGTNQAGLAAARVSDLANAGFLGATAANANGWASEITVIYYEDPNLEATAKAIGQTLGIDNVRTTTGLGDPDVVVLLR
>NZ_CP040505.1|WP_005962345.1|266150_267776_+|chaperonin-GroEL
MSKIIHFDEEARRGMERGLNLLADTVKVTLGPKGRNVVLEKKWGAPTITKDGVSVAKEIELEDPFERIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGSNPIALKRGIDQAVTAIVAQLHEDAKPVETTEQIAATASISANDTEIGSLIAQAFEKVGAEGVVTVEETNSFDTTLETTEGMRFDKGYLSAYFVTDTERQEAVLEDAYVLLMDSKISNVKDIVPVLEKVMQTGKPLLIVAEDVEGEALATLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISETVGLSLENADLELLGRARKVVVSKDETTIVEGAGDKDMIDGRVRQIRQEIENTDSDYDREKLQERLAKLAGGVAVIKSGAATEVELKERKHRIEDAIRNARAASEEGLVAGGGVALIQAADRALPALEGLVGDEATGVNIVRIAVSSPLKQIAENAGLEGGVVVDRVSSLEAGYGLNAATGEYGDLMAEGISDPVKVTRSALQNAASIAGMFLTTEAVVADKPEPPAPAGGEDAGMGGMY
>NZ_CP040505.1|WP_005962344.1|268184_268475_-|WXG100-family-type-VII-secretion-target
MAMYTIDSAQVSASAARVGQRSAEIRSQVEALMADLLALEGSWTGVAQAGFQACITDWRATQAQVEASLDAIGLRMGEAAAVYEEAEARSASLFAG
>NZ_CP040505.1|WP_005962343.1|268649_269606_-|hypothetical-protein
MGAEAPQWLFSSFTDTMQEIGASASLERLDAEARDLVAHWSAPERRLHNTRHLIDVLAHIDELAATSHDPDVLRVAAWYHGIALNRCLSIRVQGTDPVSAENLCVHITRTRLLELGVSEDVIDRVAELLSYIARHRAPRTDVDAQVLVDADLAMLAVSPQEYKKFRENLRAELSDVEETEYLRARRAVVKQLLSFNPLYQSPLGEAWDSAARANLEVELAKLDSALRDCADDSSADEAEPDPSGSIDDEGRTATGTIIIKRRQLKKKASASPDEFTSTGLLPKIAPVPETQVLSSEEDSASSLEMAIEALDLPSTPSK
>NZ_CP040505.1|WP_083879474.1|269686_271339_-|HAMP-domain-containing-histidine-kinase
MSGTVMLGLLQRHLVSQIDEQLRTTAPSALSANDFGAQKGISVFPTLFYIRSTLPGSEDAVYYYPGTLKVSGTPKIPELLRVGDVPDTEDQITRPVTVASSRSGENWRAIAFPIYAEKTHEPIGVMTVALPLTDVQRTIRTTAAYFMIGGLVIVMVGATIGSSLVRRSLLPLREIESTAGKIAAGDLTRRVPSAPPSTEVGSLALSLNAMLTQVEQSFEARQASEKKIRRFVSDASHELRTPLAAISGYCELYSMGGVPSERVDEVMGRIQSESKRMATLVEDLLTLARLDEGRPLEFTDLDLVKLADNAVFDLQALDPTRTVRLCSLNGHRPPMTVVVSADRDRISQVFTNAIGNIVRYTPEGSPVEIALGRVGCDAVVEIRDHGPGIADSDRTRVFERFYRSDSSRARTSGGSGLGLAIVASILAAHKGNARLTKTKGGGLTLRIELPITRSAPSASSEASSAQDCASSELASSENATPTLASSENASPEPTGQDSHSAESSALEGLPPEVSSQGSSSDESPSSGTANRPRESVEAPKTEDGEEHITG
>NZ_CP040505.1|WP_005962341.1|271446_272157_-|response-regulator-transcription-factor
MSRQNSEGEARLLVVDDEPNIRDLLASSLRFAGFEVSTAADGHSAYRQAMDESPDLIVLDVMLPDMDGFTVTRRLREAGVQIPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTLGAEEDDGLLRVGDLVIDEDAHEVTRAGVSIDLSPTEFKLLRYLVINERRVVSKMQILDHVWEYDWDGEAAIVESYISYLRRKLAVEGASGELIHTKRGVGYILRAED

Crispr_ID: NZ_CP040505_11

• CRISPR_ID: NZ_CP040505_11
• CRISPR_location: 262155-262352
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 3 spacers

Consensus repeat of NZ_CP040505_11

Consensus_repeat	Method
GTTGAGGTAGTACCAGGT	CRT

spacers of NZ_CP040505_11

>11.1|262173|42|NZ_CP040505|CRT
TGAGCCCTGTGCGAGCCAACCGGTGTACATTGCGCCTGAACC
>11.2|262233|42|NZ_CP040505|CRT
GCCTTGGTCATTGAGCCAGCCGCTCGCCATTGCTCCGCTGGA
>11.3|262293|42|NZ_CP040505|CRT
GCCGCCGACGGCTTGCCATCCTGTGGCCATGGCGCCGGAAGG

CRISPR arrays and Neighbor proteins around NZ_CP040505_11

CRISPR arrays

The CRISPR arrays of NZ_CP040505_11

>merge|NZ_CP040505|11|262155-262352|CRT
CTTGAGGTAGTACCAGGTTGAGCCCTGTGCGAGCCAACCGGTGTACATTGCGCCTGAACCGTTCAGGTAGTACCAGGTGCCTTGGTCATTGAGCCAGCCGCTCGCCATTGCTCCGCTGGAGTAGAGGTAGTACCAGTAGCCGCCGACGGCTTGCCATCCTGTGGCCATGGCGCCGGAAGGGCTGAGGTAGTACCAGGT

>NZ_CP040505|11|2|262155-262352|CRT
CTTGAGGTAGTACCAGGT	TGAGCCCTGTGCGAGCCAACCGGTGTACATTGCGCCTGAACC
GTTCAGGTAGTACCAGGT	GCCTTGGTCATTGAGCCAGCCGCTCGCCATTGCTCCGCTGGA
GTAGAGGTAGTACCAGTA	GCCGCCGACGGCTTGCCATCCTGTGGCCATGGCGCCGGAAGG
GCTGAGGTAGTACCAGGT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005962343.1|268649_269606_-|hypothetical-protein	unknown	unknown	gnl|CDD|226789
NZ_CP040505.1|WP_083879474.1|269686_271339_-|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl|CDD|223715
NZ_CP040505.1|WP_005962339.1|272819_274922_+|PH-domain-containing-protein	unknown	unknown	gnl|CDD|225962
NZ_CP040505.1|WP_005962338.1|274918_275791_+|DUF2520-domain-containing-protein	unknown	unknown	gnl|CDD|227782
NZ_CP040505.1|WP_005962348.1|263498_264197_-|uracil-DNA-glycosylase	unknown	unknown	gnl|CDD|235376
NZ_CP040505.1|WP_005962358.1|252452_253205_-|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl|CDD|176505
NZ_CP040505.1|WP_040313551.1|249086_249794_+|metal-dependent-transcriptional-regulator	unknown	unknown	gnl|CDD|224240
NZ_CP040505.1|WP_005962344.1|268184_268475_-|WXG100-family-type-VII-secretion-target	unknown	unknown	gnl|CDD|274862
NZ_CP040505.1|WP_005962341.1|271446_272157_-|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|223816
NZ_CP040505.1|WP_005962359.1|250115_251954_-|phosphoenolpyruvate-carboxykinase-(GTP)	unknown	unknown	gnl|CDD|235256
NZ_CP040505.1|WP_005962347.1|264580_265180_+|LytR-C-terminal-domain-containing-protein	unknown	unknown	gnl|CDD|379163
NZ_CP040505.1|WP_040313781.1|258862_259684_+|thioredoxin-domain-containing-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962362.1|247308_247812_+|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	unknown	unknown	gnl|CDD|179603
NZ_CP040505.1|WP_005962340.1|272340_272823_+|PH-domain-containing-protein	unknown	unknown	gnl|CDD|225937
NZ_CP040505.1|WP_005962356.1|254943_256071_-|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	unknown	unknown	gnl|CDD|236947
NZ_CP040505.1|WP_005962363.1|245874_247056_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962351.1|260748_261342_+|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224228
NZ_CP040505.1|WP_005962361.1|247914_248940_+|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	unknown	unknown	gnl|CDD|184425
NZ_CP040505.1|WP_005962357.1|253240_254503_-|DUF4032-domain-containing-protein	unknown	unknown	gnl|CDD|379077
NZ_CP040505.1|WP_005962345.1|266150_267776_+|chaperonin-GroEL	unknown	unknown	gnl|CDD|234573

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005962343.1|268649_269606_-|hypothetical-protein	gnl|CDD|226789	COG4339, COG4339, Uncharacterized protein conserved in bacteria [Function unknown].	1.00379e-26
NZ_CP040505.1|WP_083879474.1|269686_271339_-|HAMP-domain-containing-histidine-kinase	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.43721e-59
NZ_CP040505.1|WP_005962339.1|272819_274922_+|PH-domain-containing-protein	gnl|CDD|225962	COG3428, COG3428, Predicted membrane protein [Function unknown].	2.26712e-35
NZ_CP040505.1|WP_005962338.1|274918_275791_+|DUF2520-domain-containing-protein	gnl|CDD|227782	COG5495, COG5495, Uncharacterized conserved protein [Function unknown].	2.92687e-35
NZ_CP040505.1|WP_005962348.1|263498_264197_-|uracil-DNA-glycosylase	gnl|CDD|235376	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.	9.26431e-122
NZ_CP040505.1|WP_005962358.1|252452_253205_-|glycerophosphodiester-phosphodiesterase	gnl|CDD|176505	cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), can only be hydrolyzed by UgpQ during transport at the inner side of the cytoplasmic membrane to alcohols and G3P, which is a source of phosphate. In contrast to Ca2+-dependent periplasmic phosphodiesterase GlpQ, cytosolic phosphodiesterase UgpQ requires divalent cations, such as Mg2+, Co2+, or Mn2+, for its enzyme activity.	1.26627e-92
NZ_CP040505.1|WP_040313551.1|249086_249794_+|metal-dependent-transcriptional-regulator	gnl|CDD|224240	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription].	1.76529e-42
NZ_CP040505.1|WP_005962344.1|268184_268475_-|WXG100-family-type-VII-secretion-target	gnl|CDD|274862	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target. Members of this protein family include secretion targets for the two main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from pfam06013. The best characterized member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have a long C-terminal extension.	1.21737e-09
NZ_CP040505.1|WP_005962341.1|271446_272157_-|response-regulator-transcription-factor	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.28321e-84
NZ_CP040505.1|WP_005962359.1|250115_251954_-|phosphoenolpyruvate-carboxykinase-(GTP)	gnl|CDD|235256	PRK04210, PRK04210, phosphoenolpyruvate carboxykinase (GTP).	0
NZ_CP040505.1|WP_005962347.1|264580_265180_+|LytR-C-terminal-domain-containing-protein	gnl|CDD|379163	pfam13399, LytR_C, LytR cell envelope-related transcriptional attenuator. This family appears at the C-terminus of members of the LytR_cpsA_psr, pfam03816, family.	4.03877e-12
NZ_CP040505.1|WP_005962362.1|247308_247812_+|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	gnl|CDD|179603	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI.	6.77376e-74
NZ_CP040505.1|WP_005962340.1|272340_272823_+|PH-domain-containing-protein	gnl|CDD|225937	COG3402, COG3402, Uncharacterized conserved protein [Function unknown].	1.16574e-20
NZ_CP040505.1|WP_005962356.1|254943_256071_-|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	gnl|CDD|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	0
NZ_CP040505.1|WP_005962345.1|266150_267776_+|chaperonin-GroEL	gnl|CDD|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_CP040505.1|WP_005962351.1|260748_261342_+|TetR/AcrR-family-transcriptional-regulator	gnl|CDD|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	5.8931e-10
NZ_CP040505.1|WP_005962361.1|247914_248940_+|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	gnl|CDD|184425	PRK13965, PRK13965, ribonucleotide-diphosphate reductase subunit beta; Provisional.	0
NZ_CP040505.1|WP_005962357.1|253240_254503_-|DUF4032-domain-containing-protein	gnl|CDD|379077	pfam13224, DUF4032, Domain of unknown function (DUF4032). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 170 amino acids in length. The family is found in association with pfam06293.	2.56986e-88

Protein sequences

>NZ_CP040505.1|WP_005962351.1|260748_261342_+|TetR/AcrR-family-transcriptional-regulator
MEIKVMKKSSEEQRRRCLDGVVNLWAETGKAFTMSELATYLKMSKKTLYVLFEDKEEMILSAIDQWFDKVKAAKMQILSDPDLTTVEKVRLVMIVQPEGYGPVATSSFTEFLSEHPRIHRHIVKRLQSGWEPIIEFLARGMEAGELRRVNISILRTIVEAAFEKLLSSKEATKDWEHSLEEMMDLIIGGLEPRGEGQ
>NZ_CP040505.1|WP_040313781.1|258862_259684_+|thioredoxin-domain-containing-protein
MPLNKPQDEVRLKAQQMREAQAKADRRTRMIIISIVLIVVLAVIATVAIVISNQVNKKNAAIDADPATTLGEYANGEPIVYSHLGVGKKDEALPTLTEYFDYSCHACADIDVALGHDLVEGAERGEYNLEIQPVTTVGMAYELPATSASLIVAREDPEHWISFHHALLSYFASQFNSGKGTVIQDLDKSWEQVKVIAKEQGVSEEVVAKLPPNVVEKYLEASTQAWRDAPIQGRGNLGTPEFVKDHSTEIPLSGSNAAEFLSVVRAAMGLKTE
>NZ_CP040505.1|WP_005962356.1|254943_256071_-|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC
MATVTFEKATRIYPGNDKPSVDQLDLKIEDGEFLVLVGPSGCGKSTSLRMLAGLEDVNEGHIFIGDKDVTDVPPKNRDIAMVFQNYALYPHMTVRENMGFALKIAGTPKEEIAKRVEEAARILDLEPYLDRKPKALSGGQRQRVAMGRAIVRKPQVFLMDEPLSNLDAKLRVQTRTQIASLQRQLGVTTVYVTHDQTEALTMGDRIAVLKDGLLQQVGSPQEMYERPANEFVAGFIGSPAMNLGKFKVEGSTAILGPARIPLSAATVNALTAEDKGMITIGFRPEGLELVSETEANSIPIQVDFVEELGSDAFVYGHLAGTDGQGIGSAEEGSSKQLIVRVPPRTAPARGGVVYTRIIAGQQHNFSASTGMRLPE
>NZ_CP040505.1|WP_005962357.1|253240_254503_-|DUF4032-domain-containing-protein
MPTDFEIQATNVDPALLDLPWNLPLEEWPDSLLVALPRGISRHVVRFVQLNERVVAVKEIGAPVACHEYVMLRDLSRLNAPSVVPTAVITGRTDDNGEELNAVLITEHLQFSLPYRALFSRHMAPDTATRLIDALAVLLVRLHLLGFYWGDVSLSNALFRRDADSFSAYLVDAETGELHPKLTSGQRAYDVDIARTNIIGEFMDLQAGAFFPEEVDPIHIGDRICSRYKTLWNELTGIEMIDASQKWRVAQKIERLNELGFDVGEFNMSTVAGTSTLKIQPKVVDAGHHHRKLMRLTGMDVEENQAQRLLNDIQAFHTASGRPNSSLELSAHEWLNTAFEPVIAAVPPEFAGKLEPAQIYHEFLEHRWYLAESAGHDIPLDEAIASYVENVLAAKRDEALYIISESDAENPTPVANPDLW
>NZ_CP040505.1|WP_005962358.1|252452_253205_-|glycerophosphodiester-phosphodiesterase
MTALPRVFAHRGASSLAPENTIAAFSKAMEVGARWFEFDVDIIADGTLIVIHDNRLDRTTNGKGGYYTRSFSDIRRLDAGAWFSDTYRFERIPEAADAISFGNKQHMGMNLEIKPCRGGTQLRERLIEALAVAVDSVHDKDRFIVSSFDHELLAAFHEARPQISLGWLLDSEKQSTLGWQEGASALGCSAVHPDAKGLAKEEVWKIRDCGFDCNVWTVNDLEQAKELASWGVTGVFTDYPQLFPAEALAL
>NZ_CP040505.1|WP_005962359.1|250115_251954_-|phosphoenolpyruvate-carboxykinase-(GTP)
MNLTRIQRHLDESGVTNPAIRSFVEEWAQLTTPESIEIISAEDDARLIAEALDAEEIFPAGPGRYYTRSHPKDTARSEGRTVVATADPADKGVYNNWRPSKEVLAAQRERVAGALAGKTMYVIPYLMAVPGSPLAPFAAGVQLTDNRVVVMQMIRMARVGLHLFDDLADPSFFVRSVHVTGDLDALGQGTDEDQRLFATIADERLIIHYGSSYGGNALLGKIAHSLRQSAYDGWKSGKFLAEQFMLLGIVDKQTGRTYHVCGGFPSASGKTNLAMTLPPDALGERYRVEFYGDDITWLWVGEDGRLYGMNSENGVFGVAKDTNEATNPAALSAIQDNSGVLFTNVAYNERTQEVWWEGRTPEPPSDLEGWLDWTGKAISERSEEDKGLAWAHPNSRFATALDNVTTVAPDASSPMGVPIDAVIFGGRTRDREPLIRAMKDLAEGVYDGLTLGAEATFAAEGVEGQLRYDPMSMRPFMSYSEGDYAAHWLKILGNVTHAPIFAHVNWFQRDPEDGHFLWPGYRDNLRALLWLMDYQEGRVQGRRTPVGVVPNADELNREGLAISDEDLARLLTIDVERWRQEMGFRREHLAQFTNLPEEIEAVHERIETELRN
>NZ_CP040505.1|WP_040313551.1|249086_249794_+|metal-dependent-transcriptional-regulator
MVPSHLSASSQNYLKAVWTLGEWSDEPVTASTIAAKVGVRLSTASDAIRKLSDQGFLAHAPYGAVTLTDKGLAVAIAMVRRHRLIEAFLVETLGYRADQVHEEAEVLEHAVSDLLIERIDAHLGEPERDPHGDPIPRADGSLPALGAHSLAEFARSSSKGEVLRIERIADDDPELVRFLAEQGIVYGAEVILCEASPYSEAVALKLQGTDEELSFGLPAARSIWVGTIESQKAEN
>NZ_CP040505.1|WP_005962361.1|247914_248940_+|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta
MTTSTPRTPITERSITPPRYRRDPEARIRPINWNRVDDPKDHEVWNRLTSNFWLPEKVPLSNDLPSWHAMTQEERTLTMRVFTGLTMLDTVQATVGEISQIQDARTEHEEAVYTNIAFMQAVHARSYSSIFSTLCSSEEIDAAYEWAVDNDLLQRRAKTVLRHYYGDDPLKRKVSATLLSSLLLYAGFYLPLHFSVRAKLMNTADMIRLILRDKAVHGYYSGYKYQRGLEMRSEEKHKQMRDFTYTLLEELYELEMQYSGALYEPLGLMDDVAVFVRYNANKALMNLGYPARFAPEETEVKAEILAALAPGADENHDFFSGSGSSYVIGTAEETSDEDWEF
>NZ_CP040505.1|WP_005962362.1|247308_247812_+|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI
MTSTKRAELPVRELSYDESPDLVYFSSVSENTKRFVDKLDRPAVRIPLRPRLEGRLRVNRPYVLIVPSYGGGDKTQAIPKQVAIFLNDPHNRALLRGIITSGNTNFGEHYCIAGPIIAAKCHVPELYRFELLGSDRDVERVNIGLQHFWAEIEADDTSNAPPMNLRR
>NZ_CP040505.1|WP_005962363.1|245874_247056_+|hypothetical-protein
MEQDWTRIEGMIIGRDIDPALVATALREQAVLAQLEWFPSSPQLLGVNVALADGHVALVKDKKVAPGPTSEELAETLAALFECEVRIGSATADHLPEGESPLSDNWDEDDLDVEEPSSRIVEIGRTPASSVPLLAALEGIDLVSVELAEGRRALLAELPPEKAGWNFGDLPLVTLSRQDEEFQVFLVTDDHLEHVITHNWGMKTLLIAGAHESAGELDQEILDFVSDRPDLEAIAKAMPGADLDALIESTTSFGEDAVRRVVKALGLPAGLADFLLGALPASEVEGAEVHFARGVSNAIGRSVDIMLSDPESRAQPLWSTYQSVAVEKPGLVRALASAEAIVGTALLTLAARGEAPRSRWLKCGGFIGALLLVDSVAEVSLSSYLRRRHQDKE
>NZ_CP040505.1|WP_005962348.1|263498_264197_-|uracil-DNA-glycosylase
MTDVSPKPLSALIDPGWAKALAPVEPKIHELGAMLRAEIAQGHNYLPAGTDVLRAFTYPFEQVKVLIVGQDPYPTPGHAMGLSFSVAPGVAIPRSLQNIFAELESDIGAPRPSSGDLRKWSREGVCLLNRVLTVRPGAPGSHRRRGWEEVTECAIDALVHRRDDAGNRLPLVAILWGKDAQTLEPRLEGVPIVKSSHPSPMSARYGFFGSRPFSRANALLESQGASPVDWAL
>NZ_CP040505.1|WP_005962347.1|264580_265180_+|LytR-C-terminal-domain-containing-protein
MSSQYPRDEFDLAGEDMPVGMHRPVPSRWKAVLPFLAILVIVPLLAWGASSYLTHRDTSNNNANSTPAQSGNQAQSADSQPMSTDQNQSTEEPQPQPSPAEQPQSTPPEPIVDHNVKISVLNGTNQAGLAAARVSDLANAGFLGATAANANGWASEITVIYYEDPNLEATAKAIGQTLGIDNVRTTTGLGDPDVVVLLR
>NZ_CP040505.1|WP_005962345.1|266150_267776_+|chaperonin-GroEL
MSKIIHFDEEARRGMERGLNLLADTVKVTLGPKGRNVVLEKKWGAPTITKDGVSVAKEIELEDPFERIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGSNPIALKRGIDQAVTAIVAQLHEDAKPVETTEQIAATASISANDTEIGSLIAQAFEKVGAEGVVTVEETNSFDTTLETTEGMRFDKGYLSAYFVTDTERQEAVLEDAYVLLMDSKISNVKDIVPVLEKVMQTGKPLLIVAEDVEGEALATLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISETVGLSLENADLELLGRARKVVVSKDETTIVEGAGDKDMIDGRVRQIRQEIENTDSDYDREKLQERLAKLAGGVAVIKSGAATEVELKERKHRIEDAIRNARAASEEGLVAGGGVALIQAADRALPALEGLVGDEATGVNIVRIAVSSPLKQIAENAGLEGGVVVDRVSSLEAGYGLNAATGEYGDLMAEGISDPVKVTRSALQNAASIAGMFLTTEAVVADKPEPPAPAGGEDAGMGGMY
>NZ_CP040505.1|WP_005962344.1|268184_268475_-|WXG100-family-type-VII-secretion-target
MAMYTIDSAQVSASAARVGQRSAEIRSQVEALMADLLALEGSWTGVAQAGFQACITDWRATQAQVEASLDAIGLRMGEAAAVYEEAEARSASLFAG
>NZ_CP040505.1|WP_005962343.1|268649_269606_-|hypothetical-protein
MGAEAPQWLFSSFTDTMQEIGASASLERLDAEARDLVAHWSAPERRLHNTRHLIDVLAHIDELAATSHDPDVLRVAAWYHGIALNRCLSIRVQGTDPVSAENLCVHITRTRLLELGVSEDVIDRVAELLSYIARHRAPRTDVDAQVLVDADLAMLAVSPQEYKKFRENLRAELSDVEETEYLRARRAVVKQLLSFNPLYQSPLGEAWDSAARANLEVELAKLDSALRDCADDSSADEAEPDPSGSIDDEGRTATGTIIIKRRQLKKKASASPDEFTSTGLLPKIAPVPETQVLSSEEDSASSLEMAIEALDLPSTPSK
>NZ_CP040505.1|WP_083879474.1|269686_271339_-|HAMP-domain-containing-histidine-kinase
MSGTVMLGLLQRHLVSQIDEQLRTTAPSALSANDFGAQKGISVFPTLFYIRSTLPGSEDAVYYYPGTLKVSGTPKIPELLRVGDVPDTEDQITRPVTVASSRSGENWRAIAFPIYAEKTHEPIGVMTVALPLTDVQRTIRTTAAYFMIGGLVIVMVGATIGSSLVRRSLLPLREIESTAGKIAAGDLTRRVPSAPPSTEVGSLALSLNAMLTQVEQSFEARQASEKKIRRFVSDASHELRTPLAAISGYCELYSMGGVPSERVDEVMGRIQSESKRMATLVEDLLTLARLDEGRPLEFTDLDLVKLADNAVFDLQALDPTRTVRLCSLNGHRPPMTVVVSADRDRISQVFTNAIGNIVRYTPEGSPVEIALGRVGCDAVVEIRDHGPGIADSDRTRVFERFYRSDSSRARTSGGSGLGLAIVASILAAHKGNARLTKTKGGGLTLRIELPITRSAPSASSEASSAQDCASSELASSENATPTLASSENASPEPTGQDSHSAESSALEGLPPEVSSQGSSSDESPSSGTANRPRESVEAPKTEDGEEHITG
>NZ_CP040505.1|WP_005962341.1|271446_272157_-|response-regulator-transcription-factor
MSRQNSEGEARLLVVDDEPNIRDLLASSLRFAGFEVSTAADGHSAYRQAMDESPDLIVLDVMLPDMDGFTVTRRLREAGVQIPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTLGAEEDDGLLRVGDLVIDEDAHEVTRAGVSIDLSPTEFKLLRYLVINERRVVSKMQILDHVWEYDWDGEAAIVESYISYLRRKLAVEGASGELIHTKRGVGYILRAED
>NZ_CP040505.1|WP_005962340.1|272340_272823_+|PH-domain-containing-protein
MTDPMAPVGLEFHPVSQKLALVRIISSMLGLLPVLIASVVAARLLTPLFWIVFAVFVCVSVWDLWFISRQVKAMAFALAGDEFCIRKGIMFRRLTLIPYGRIQYIEISEGPIARMFGIAEIKVHTASAHTDATLNGVPVDEAVRLRDMLAERGSAELAGL
>NZ_CP040505.1|WP_005962339.1|272819_274922_+|PH-domain-containing-protein
MSAGGGAAPKIRATEGAIAEGQWRRLHPLSPLIKAWKGVTVLLAIVLFQNTNLFVNTLSSNYAHSLGTGRIVLIAVGGLLGLVLILGLISYLSWRVTRFAVTDSGVYYRSGILLRTLKQARLERIQGVDIQHPLLGRVFGLGTIDIEVAGGAGSKVAFGFLKTQELEDLRAEILARASGVFSDATVAQAGSFAPHHSKAGVPVPGTNAGYGEGTPLPPAGASSPSATAGMTPRRFAPSAPERVLYKVPSGRLLGSLILTSGVFVGVLVLLAVLVGVGVLTTLIGAGGLSGVVGLLPILLAMGAIVWKRFAGEFNFTGAVSPDGIRTRSGLLETRSQTIPPNRIHAVRIQRPLLWRWVGWYRVTITQAGFAVQNQEETKKGFSTDLLLPVGTRADAELALWLVVRDLGVPDPQAFMSAALDGTGEGVGFIPVSTRARILDPLVKKRRAVALTQTCLVIRDGWLSWDLSVIPVERVQSLKLAQGPLERRLSLADVEAQIVPGTTPCRARHLDVSAAVALSEGLRERARIRRTKEPPERWLSRVQSRLDFEGRTGVIGEAGAVLPSGAQSASSMAGGQSRLYSQPGVIPSAVQSPPLMPYPQGGQPMPYPQNGQPMPYPQGGQPAAQAPSGQPALNGLTTPFPSAGQAGPFPQATTQPQIAHPAPIPPNGQPAPLPPNGQAGPIPEIPPQASSAQPPFAEEHS
>NZ_CP040505.1|WP_005962338.1|274918_275791_+|DUF2520-domain-containing-protein
MSAGRLGIGLIGVGKSGPIIASSLRAAGHEIIGVAARSAEAVERADAFLPGVPVLPIEEIVAQSELVLLALPDEEIAPLVAGLAELGAWKMGTILVHLAGPYGTGILAPAHAQGAIPVAIHPTIRFTGWSVDLQRLTGAPFLVTAPGPFLPIAQALVVEMGGEPIIIEEDARPGVHAALTLGVNGIAMGVIRAFEALKAQGIEEPSLIAGPLFGQTTDVALSEGEAAIAAPITRADAEVVRSHVKALATLGDDALNAYEAGVRDAVTMLLCRARLNERDADAVRSALLEG

Crispr_ID: NZ_CP040505_12

• CRISPR_ID: NZ_CP040505_12
• CRISPR_location: 267847-268178
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 4 spacers

Consensus repeat of NZ_CP040505_12

Consensus_repeat	Method
GGGCGGCCCCCGCGCCTGCATGAGCCTTTGGGG	PILER-CR
GGGCGNNCCCCGCGCCTGCA	CRT
GGGCGCTCCCCGCGCCTGCAGCGAAGGC	CRISPRCasFinder

spacers of NZ_CP040505_12

>12.1|267880|34|NZ_CP040505|PILER-CR
GAAGGGGGGAGGTGGCGAGCTCGCTCCAGTGGGC
>12.2|267947|38|NZ_CP040505|PILER-CR
AGCGGACCGCTCCACCATTGTCAGCTCTCCTGAGGCTT
>12.3|267867|42|NZ_CP040505|CRT
TGAGCCTTTGGGGGAAGGGGGGAGGTGGCGAGCTCGCTCCAG
>12.4|267929|41|NZ_CP040505|CRT
TGAAGCGGACCGCTCCACCATTGTCAGCTCTCCTGAGGCTT
>12.5|267990|40|NZ_CP040505|CRT
TGAGCCTTTGGGGAGGGGGCGGCGGGGAGCTCGCTCCAGT
>12.6|268050|41|NZ_CP040505|CRT
GCGAAGGCGCTCGGTACCCGTCGGTTCCTCGCGGCGTTGGA
>12.7|268058|33|NZ_CP040505|CRISPRCasFinder
GCTCGGTACCCGTCGGTTCCTCGCGGCGTTGGA
>12.8|268119|32|NZ_CP040505|CRISPRCasFinder
ATCCAGGAGGCGGATCTTCAGTGGGGGCCGAG

CRISPR arrays and Neighbor proteins around NZ_CP040505_12

CRISPR arrays

The CRISPR arrays of NZ_CP040505_12

>merge|NZ_CP040505|12|267847-268178|PILER-CR,CRT,CRISPRCasFinder
GGGCGGCCCCCGCGCCTGCATGAGCCTTTGGGGGAAGGGGGGAGGTGGCGAGCTCGCTCCAGTGGGCGCCCCCGCGCCTGCATGAAGCGGACCGCTCCACCATTGTCAGCTCTCCTGAGGCTTGGGCGGCCCCCGCGCCTGCATGAGCCTTTGGGGAGGGGGCGGCGGGGAGCTCGCTCCAGTGGGCGCTCCCCGCGCCTGCAGCGAAGGCGCTCGGTACCCGTCGGTTCCTCGCGGCGTTGGAGGGCGCTCCCCGCGCTTGCAGCGAAGGCATCCAGGAGGCGGATCTTCAGTGGGGGCCGAGCGGAGGGCCTCGCGCCTGCACCAAAGGC

>NZ_CP040505|12|2|267847-268002|PILER-CR
GGGCGGCCCCCGCGCCTGCATGAGCCTTTGGGG	GAAGGGGGGAGGTGGCGAGCTCGCTCCAGTGGGC
GCCCCCGCGCCTGCATGAAGCGGACCGCTCCAC	CATTGTCAGCTCTCCTGAGGCTTGGGCGGCCCCCGCGC
CTGCATGAGCCTTTGGGG

>NZ_CP040505|12|3|267847-268110|CRT
GGGCGGCCCCCGCGCCTGCA	TGAGCCTTTGGGGGAAGGGGGGAGGTGGCGAGCTCGCTCCAG
TGGGCGCCCCCGCGCCTGCA	TGAAGCGGACCGCTCCACCATTGTCAGCTCTCCTGAGGCTT
GGGCGGCCCCCGCGCCTGCA	TGAGCCTTTGGGGAGGGGGCGGCGGGGAGCTCGCTCCAGT
GGGCGCTCCCCGCGCCTGCA	GCGAAGGCGCTCGGTACCCGTCGGTTCCTCGCGGCGTTGGA
GGGCGCTCCCCGCGCTTGCA

>NZ_CP040505|12|11|268030-268178|CRISPRCasFinder
GGGCGCTCCCCGCGCCTGCAGCGAAGGC	GCTCGGTACCCGTCGGTTCCTCGCGGCGTTGGA
GGGCGCTCCCCGCGCTTGCAGCGAAGGC	ATCCAGGAGGCGGATCTTCAGTGGGGGCCGAG
CGGAGGGCCTCGCGCCTGCACCAAAGGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005962343.1|268649_269606_-|hypothetical-protein	unknown	unknown	gnl|CDD|226789
NZ_CP040505.1|WP_083879474.1|269686_271339_-|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl|CDD|223715
NZ_CP040505.1|WP_005962350.1|261647_263036_-|L,D-transpeptidase-family-protein	unknown	unknown	gnl|CDD|227588
NZ_CP040505.1|WP_005962338.1|274918_275791_+|DUF2520-domain-containing-protein	unknown	unknown	gnl|CDD|227782
NZ_CP040505.1|WP_005962348.1|263498_264197_-|uracil-DNA-glycosylase	unknown	unknown	gnl|CDD|235376
NZ_CP040505.1|WP_005962358.1|252452_253205_-|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl|CDD|176505
NZ_CP040505.1|WP_005962339.1|272819_274922_+|PH-domain-containing-protein	unknown	unknown	gnl|CDD|225962
NZ_CP040505.1|WP_005962336.1|276813_277248_+|aspartate-1-decarboxylase	unknown	unknown	gnl|CDD|376751
NZ_CP040505.1|WP_005962341.1|271446_272157_-|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|223816
NZ_CP040505.1|WP_005962359.1|250115_251954_-|phosphoenolpyruvate-carboxykinase-(GTP)	unknown	unknown	gnl|CDD|235256
NZ_CP040505.1|WP_005962347.1|264580_265180_+|LytR-C-terminal-domain-containing-protein	unknown	unknown	gnl|CDD|379163
NZ_CP040505.1|WP_040313781.1|258862_259684_+|thioredoxin-domain-containing-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_138588740.1|277434_277626_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962340.1|272340_272823_+|PH-domain-containing-protein	unknown	unknown	gnl|CDD|225937
NZ_CP040505.1|WP_005962356.1|254943_256071_-|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	unknown	unknown	gnl|CDD|236947
NZ_CP040505.1|WP_005962345.1|266150_267776_+|chaperonin-GroEL	unknown	unknown	gnl|CDD|234573
NZ_CP040505.1|WP_005962351.1|260748_261342_+|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224228
NZ_CP040505.1|WP_005962344.1|268184_268475_-|WXG100-family-type-VII-secretion-target	unknown	unknown	gnl|CDD|274862
NZ_CP040505.1|WP_005962357.1|253240_254503_-|DUF4032-domain-containing-protein	unknown	unknown	gnl|CDD|379077
NZ_CP040505.1|WP_005962337.1|275885_276803_+|pantoate--beta-alanine-ligase	unknown	unknown	gnl|CDD|376824

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005962343.1|268649_269606_-|hypothetical-protein	gnl|CDD|226789	COG4339, COG4339, Uncharacterized protein conserved in bacteria [Function unknown].	1.00379e-26
NZ_CP040505.1|WP_083879474.1|269686_271339_-|HAMP-domain-containing-histidine-kinase	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.43721e-59
NZ_CP040505.1|WP_005962350.1|261647_263036_-|L,D-transpeptidase-family-protein	gnl|CDD|227588	COG5263, COG5263, FOG: Glucan-binding domain (YG repeat) [General function prediction only].	1.54371e-31
NZ_CP040505.1|WP_005962338.1|274918_275791_+|DUF2520-domain-containing-protein	gnl|CDD|227782	COG5495, COG5495, Uncharacterized conserved protein [Function unknown].	2.92687e-35
NZ_CP040505.1|WP_005962348.1|263498_264197_-|uracil-DNA-glycosylase	gnl|CDD|235376	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.	9.26431e-122
NZ_CP040505.1|WP_005962358.1|252452_253205_-|glycerophosphodiester-phosphodiesterase	gnl|CDD|176505	cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), can only be hydrolyzed by UgpQ during transport at the inner side of the cytoplasmic membrane to alcohols and G3P, which is a source of phosphate. In contrast to Ca2+-dependent periplasmic phosphodiesterase GlpQ, cytosolic phosphodiesterase UgpQ requires divalent cations, such as Mg2+, Co2+, or Mn2+, for its enzyme activity.	1.26627e-92
NZ_CP040505.1|WP_005962339.1|272819_274922_+|PH-domain-containing-protein	gnl|CDD|225962	COG3428, COG3428, Predicted membrane protein [Function unknown].	2.26712e-35
NZ_CP040505.1|WP_005962336.1|276813_277248_+|aspartate-1-decarboxylase	gnl|CDD|376751	pfam02261, Asp_decarbox, Aspartate decarboxylase. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme aspartate decarboxylase EC:4.1.1.11 which requires a pyruvoyl group for its activity. It is synthesized initially as a proenzyme which is then proteolytically cleaved to an alpha (C-terminal) and beta (N-terminal) subunit and a pyruvoyl group. This family contains both chains of aspartate decarboxylase.	1.11236e-69
NZ_CP040505.1|WP_005962341.1|271446_272157_-|response-regulator-transcription-factor	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.28321e-84
NZ_CP040505.1|WP_005962359.1|250115_251954_-|phosphoenolpyruvate-carboxykinase-(GTP)	gnl|CDD|235256	PRK04210, PRK04210, phosphoenolpyruvate carboxykinase (GTP).	0
NZ_CP040505.1|WP_005962347.1|264580_265180_+|LytR-C-terminal-domain-containing-protein	gnl|CDD|379163	pfam13399, LytR_C, LytR cell envelope-related transcriptional attenuator. This family appears at the C-terminus of members of the LytR_cpsA_psr, pfam03816, family.	4.03877e-12
NZ_CP040505.1|WP_005962340.1|272340_272823_+|PH-domain-containing-protein	gnl|CDD|225937	COG3402, COG3402, Uncharacterized conserved protein [Function unknown].	1.16574e-20
NZ_CP040505.1|WP_005962356.1|254943_256071_-|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	gnl|CDD|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	0
NZ_CP040505.1|WP_005962345.1|266150_267776_+|chaperonin-GroEL	gnl|CDD|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_CP040505.1|WP_005962351.1|260748_261342_+|TetR/AcrR-family-transcriptional-regulator	gnl|CDD|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	5.8931e-10
NZ_CP040505.1|WP_005962344.1|268184_268475_-|WXG100-family-type-VII-secretion-target	gnl|CDD|274862	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target. Members of this protein family include secretion targets for the two main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from pfam06013. The best characterized member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have a long C-terminal extension.	1.21737e-09
NZ_CP040505.1|WP_005962357.1|253240_254503_-|DUF4032-domain-containing-protein	gnl|CDD|379077	pfam13224, DUF4032, Domain of unknown function (DUF4032). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 170 amino acids in length. The family is found in association with pfam06293.	2.56986e-88
NZ_CP040505.1|WP_005962337.1|275885_276803_+|pantoate--beta-alanine-ligase	gnl|CDD|376824	pfam02569, Pantoate_ligase, Pantoate-beta-alanine ligase. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (EC:6.3.2.1) catalyzes the formation of pantothenate from pantoate and alanine.	1.58437e-122

Protein sequences

>NZ_CP040505.1|WP_005962345.1|266150_267776_+|chaperonin-GroEL
MSKIIHFDEEARRGMERGLNLLADTVKVTLGPKGRNVVLEKKWGAPTITKDGVSVAKEIELEDPFERIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGSNPIALKRGIDQAVTAIVAQLHEDAKPVETTEQIAATASISANDTEIGSLIAQAFEKVGAEGVVTVEETNSFDTTLETTEGMRFDKGYLSAYFVTDTERQEAVLEDAYVLLMDSKISNVKDIVPVLEKVMQTGKPLLIVAEDVEGEALATLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISETVGLSLENADLELLGRARKVVVSKDETTIVEGAGDKDMIDGRVRQIRQEIENTDSDYDREKLQERLAKLAGGVAVIKSGAATEVELKERKHRIEDAIRNARAASEEGLVAGGGVALIQAADRALPALEGLVGDEATGVNIVRIAVSSPLKQIAENAGLEGGVVVDRVSSLEAGYGLNAATGEYGDLMAEGISDPVKVTRSALQNAASIAGMFLTTEAVVADKPEPPAPAGGEDAGMGGMY
>NZ_CP040505.1|WP_005962347.1|264580_265180_+|LytR-C-terminal-domain-containing-protein
MSSQYPRDEFDLAGEDMPVGMHRPVPSRWKAVLPFLAILVIVPLLAWGASSYLTHRDTSNNNANSTPAQSGNQAQSADSQPMSTDQNQSTEEPQPQPSPAEQPQSTPPEPIVDHNVKISVLNGTNQAGLAAARVSDLANAGFLGATAANANGWASEITVIYYEDPNLEATAKAIGQTLGIDNVRTTTGLGDPDVVVLLR
>NZ_CP040505.1|WP_005962348.1|263498_264197_-|uracil-DNA-glycosylase
MTDVSPKPLSALIDPGWAKALAPVEPKIHELGAMLRAEIAQGHNYLPAGTDVLRAFTYPFEQVKVLIVGQDPYPTPGHAMGLSFSVAPGVAIPRSLQNIFAELESDIGAPRPSSGDLRKWSREGVCLLNRVLTVRPGAPGSHRRRGWEEVTECAIDALVHRRDDAGNRLPLVAILWGKDAQTLEPRLEGVPIVKSSHPSPMSARYGFFGSRPFSRANALLESQGASPVDWAL
>NZ_CP040505.1|WP_005962350.1|261647_263036_-|L,D-transpeptidase-family-protein
MAVSIRQAFRRSGTVIGLVLALIATPGVALADSLESPTPRPSSFEQPTPPNPGTSSPHEDSHPTAPSTSLPTAPSTSGASSEDGAETQVPENPQSGSGWVGEGAQRRYIDPETGLAATNKVRKIDGVVYAFNAEGFIVDGWFTSPEGEHYYSTPQGVRFGWFSLNSKWYYGDPAALGARVHGWLNEGGARYYLAPTGEMLTGWQNLDSDWYFFAASGAMRTGWLAQGSTWYYLSPSGAMATGWQAVGGYWYYLYSSGAMASGWLNDQGTWYYLNGSGAMYTGWLAQGSTWYYLKGSGAMATDWEGIGWKWNLFDHYSGAWITDRASFQYDWDRAKSLYSPTNYLILVDTSAVYCTGFYWRDGTWWPQHDWPCSVGAPSTPTITGTYSIGSRGHSFGNGFTAYWWTQIWGDYLFHSTLYYQGTLTPLDSRLGMHISHGCIRMRYEDAYWINHTIPSGTTVHLY
>NZ_CP040505.1|WP_005962351.1|260748_261342_+|TetR/AcrR-family-transcriptional-regulator
MEIKVMKKSSEEQRRRCLDGVVNLWAETGKAFTMSELATYLKMSKKTLYVLFEDKEEMILSAIDQWFDKVKAAKMQILSDPDLTTVEKVRLVMIVQPEGYGPVATSSFTEFLSEHPRIHRHIVKRLQSGWEPIIEFLARGMEAGELRRVNISILRTIVEAAFEKLLSSKEATKDWEHSLEEMMDLIIGGLEPRGEGQ
>NZ_CP040505.1|WP_040313781.1|258862_259684_+|thioredoxin-domain-containing-protein
MPLNKPQDEVRLKAQQMREAQAKADRRTRMIIISIVLIVVLAVIATVAIVISNQVNKKNAAIDADPATTLGEYANGEPIVYSHLGVGKKDEALPTLTEYFDYSCHACADIDVALGHDLVEGAERGEYNLEIQPVTTVGMAYELPATSASLIVAREDPEHWISFHHALLSYFASQFNSGKGTVIQDLDKSWEQVKVIAKEQGVSEEVVAKLPPNVVEKYLEASTQAWRDAPIQGRGNLGTPEFVKDHSTEIPLSGSNAAEFLSVVRAAMGLKTE
>NZ_CP040505.1|WP_005962356.1|254943_256071_-|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC
MATVTFEKATRIYPGNDKPSVDQLDLKIEDGEFLVLVGPSGCGKSTSLRMLAGLEDVNEGHIFIGDKDVTDVPPKNRDIAMVFQNYALYPHMTVRENMGFALKIAGTPKEEIAKRVEEAARILDLEPYLDRKPKALSGGQRQRVAMGRAIVRKPQVFLMDEPLSNLDAKLRVQTRTQIASLQRQLGVTTVYVTHDQTEALTMGDRIAVLKDGLLQQVGSPQEMYERPANEFVAGFIGSPAMNLGKFKVEGSTAILGPARIPLSAATVNALTAEDKGMITIGFRPEGLELVSETEANSIPIQVDFVEELGSDAFVYGHLAGTDGQGIGSAEEGSSKQLIVRVPPRTAPARGGVVYTRIIAGQQHNFSASTGMRLPE
>NZ_CP040505.1|WP_005962357.1|253240_254503_-|DUF4032-domain-containing-protein
MPTDFEIQATNVDPALLDLPWNLPLEEWPDSLLVALPRGISRHVVRFVQLNERVVAVKEIGAPVACHEYVMLRDLSRLNAPSVVPTAVITGRTDDNGEELNAVLITEHLQFSLPYRALFSRHMAPDTATRLIDALAVLLVRLHLLGFYWGDVSLSNALFRRDADSFSAYLVDAETGELHPKLTSGQRAYDVDIARTNIIGEFMDLQAGAFFPEEVDPIHIGDRICSRYKTLWNELTGIEMIDASQKWRVAQKIERLNELGFDVGEFNMSTVAGTSTLKIQPKVVDAGHHHRKLMRLTGMDVEENQAQRLLNDIQAFHTASGRPNSSLELSAHEWLNTAFEPVIAAVPPEFAGKLEPAQIYHEFLEHRWYLAESAGHDIPLDEAIASYVENVLAAKRDEALYIISESDAENPTPVANPDLW
>NZ_CP040505.1|WP_005962358.1|252452_253205_-|glycerophosphodiester-phosphodiesterase
MTALPRVFAHRGASSLAPENTIAAFSKAMEVGARWFEFDVDIIADGTLIVIHDNRLDRTTNGKGGYYTRSFSDIRRLDAGAWFSDTYRFERIPEAADAISFGNKQHMGMNLEIKPCRGGTQLRERLIEALAVAVDSVHDKDRFIVSSFDHELLAAFHEARPQISLGWLLDSEKQSTLGWQEGASALGCSAVHPDAKGLAKEEVWKIRDCGFDCNVWTVNDLEQAKELASWGVTGVFTDYPQLFPAEALAL
>NZ_CP040505.1|WP_005962359.1|250115_251954_-|phosphoenolpyruvate-carboxykinase-(GTP)
MNLTRIQRHLDESGVTNPAIRSFVEEWAQLTTPESIEIISAEDDARLIAEALDAEEIFPAGPGRYYTRSHPKDTARSEGRTVVATADPADKGVYNNWRPSKEVLAAQRERVAGALAGKTMYVIPYLMAVPGSPLAPFAAGVQLTDNRVVVMQMIRMARVGLHLFDDLADPSFFVRSVHVTGDLDALGQGTDEDQRLFATIADERLIIHYGSSYGGNALLGKIAHSLRQSAYDGWKSGKFLAEQFMLLGIVDKQTGRTYHVCGGFPSASGKTNLAMTLPPDALGERYRVEFYGDDITWLWVGEDGRLYGMNSENGVFGVAKDTNEATNPAALSAIQDNSGVLFTNVAYNERTQEVWWEGRTPEPPSDLEGWLDWTGKAISERSEEDKGLAWAHPNSRFATALDNVTTVAPDASSPMGVPIDAVIFGGRTRDREPLIRAMKDLAEGVYDGLTLGAEATFAAEGVEGQLRYDPMSMRPFMSYSEGDYAAHWLKILGNVTHAPIFAHVNWFQRDPEDGHFLWPGYRDNLRALLWLMDYQEGRVQGRRTPVGVVPNADELNREGLAISDEDLARLLTIDVERWRQEMGFRREHLAQFTNLPEEIEAVHERIETELRN
>NZ_CP040505.1|WP_005962344.1|268184_268475_-|WXG100-family-type-VII-secretion-target
MAMYTIDSAQVSASAARVGQRSAEIRSQVEALMADLLALEGSWTGVAQAGFQACITDWRATQAQVEASLDAIGLRMGEAAAVYEEAEARSASLFAG
>NZ_CP040505.1|WP_005962343.1|268649_269606_-|hypothetical-protein
MGAEAPQWLFSSFTDTMQEIGASASLERLDAEARDLVAHWSAPERRLHNTRHLIDVLAHIDELAATSHDPDVLRVAAWYHGIALNRCLSIRVQGTDPVSAENLCVHITRTRLLELGVSEDVIDRVAELLSYIARHRAPRTDVDAQVLVDADLAMLAVSPQEYKKFRENLRAELSDVEETEYLRARRAVVKQLLSFNPLYQSPLGEAWDSAARANLEVELAKLDSALRDCADDSSADEAEPDPSGSIDDEGRTATGTIIIKRRQLKKKASASPDEFTSTGLLPKIAPVPETQVLSSEEDSASSLEMAIEALDLPSTPSK
>NZ_CP040505.1|WP_083879474.1|269686_271339_-|HAMP-domain-containing-histidine-kinase
MSGTVMLGLLQRHLVSQIDEQLRTTAPSALSANDFGAQKGISVFPTLFYIRSTLPGSEDAVYYYPGTLKVSGTPKIPELLRVGDVPDTEDQITRPVTVASSRSGENWRAIAFPIYAEKTHEPIGVMTVALPLTDVQRTIRTTAAYFMIGGLVIVMVGATIGSSLVRRSLLPLREIESTAGKIAAGDLTRRVPSAPPSTEVGSLALSLNAMLTQVEQSFEARQASEKKIRRFVSDASHELRTPLAAISGYCELYSMGGVPSERVDEVMGRIQSESKRMATLVEDLLTLARLDEGRPLEFTDLDLVKLADNAVFDLQALDPTRTVRLCSLNGHRPPMTVVVSADRDRISQVFTNAIGNIVRYTPEGSPVEIALGRVGCDAVVEIRDHGPGIADSDRTRVFERFYRSDSSRARTSGGSGLGLAIVASILAAHKGNARLTKTKGGGLTLRIELPITRSAPSASSEASSAQDCASSELASSENATPTLASSENASPEPTGQDSHSAESSALEGLPPEVSSQGSSSDESPSSGTANRPRESVEAPKTEDGEEHITG
>NZ_CP040505.1|WP_005962341.1|271446_272157_-|response-regulator-transcription-factor
MSRQNSEGEARLLVVDDEPNIRDLLASSLRFAGFEVSTAADGHSAYRQAMDESPDLIVLDVMLPDMDGFTVTRRLREAGVQIPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTLGAEEDDGLLRVGDLVIDEDAHEVTRAGVSIDLSPTEFKLLRYLVINERRVVSKMQILDHVWEYDWDGEAAIVESYISYLRRKLAVEGASGELIHTKRGVGYILRAED
>NZ_CP040505.1|WP_005962340.1|272340_272823_+|PH-domain-containing-protein
MTDPMAPVGLEFHPVSQKLALVRIISSMLGLLPVLIASVVAARLLTPLFWIVFAVFVCVSVWDLWFISRQVKAMAFALAGDEFCIRKGIMFRRLTLIPYGRIQYIEISEGPIARMFGIAEIKVHTASAHTDATLNGVPVDEAVRLRDMLAERGSAELAGL
>NZ_CP040505.1|WP_005962339.1|272819_274922_+|PH-domain-containing-protein
MSAGGGAAPKIRATEGAIAEGQWRRLHPLSPLIKAWKGVTVLLAIVLFQNTNLFVNTLSSNYAHSLGTGRIVLIAVGGLLGLVLILGLISYLSWRVTRFAVTDSGVYYRSGILLRTLKQARLERIQGVDIQHPLLGRVFGLGTIDIEVAGGAGSKVAFGFLKTQELEDLRAEILARASGVFSDATVAQAGSFAPHHSKAGVPVPGTNAGYGEGTPLPPAGASSPSATAGMTPRRFAPSAPERVLYKVPSGRLLGSLILTSGVFVGVLVLLAVLVGVGVLTTLIGAGGLSGVVGLLPILLAMGAIVWKRFAGEFNFTGAVSPDGIRTRSGLLETRSQTIPPNRIHAVRIQRPLLWRWVGWYRVTITQAGFAVQNQEETKKGFSTDLLLPVGTRADAELALWLVVRDLGVPDPQAFMSAALDGTGEGVGFIPVSTRARILDPLVKKRRAVALTQTCLVIRDGWLSWDLSVIPVERVQSLKLAQGPLERRLSLADVEAQIVPGTTPCRARHLDVSAAVALSEGLRERARIRRTKEPPERWLSRVQSRLDFEGRTGVIGEAGAVLPSGAQSASSMAGGQSRLYSQPGVIPSAVQSPPLMPYPQGGQPMPYPQNGQPMPYPQGGQPAAQAPSGQPALNGLTTPFPSAGQAGPFPQATTQPQIAHPAPIPPNGQPAPLPPNGQAGPIPEIPPQASSAQPPFAEEHS
>NZ_CP040505.1|WP_005962338.1|274918_275791_+|DUF2520-domain-containing-protein
MSAGRLGIGLIGVGKSGPIIASSLRAAGHEIIGVAARSAEAVERADAFLPGVPVLPIEEIVAQSELVLLALPDEEIAPLVAGLAELGAWKMGTILVHLAGPYGTGILAPAHAQGAIPVAIHPTIRFTGWSVDLQRLTGAPFLVTAPGPFLPIAQALVVEMGGEPIIIEEDARPGVHAALTLGVNGIAMGVIRAFEALKAQGIEEPSLIAGPLFGQTTDVALSEGEAAIAAPITRADAEVVRSHVKALATLGDDALNAYEAGVRDAVTMLLCRARLNERDADAVRSALLEG
>NZ_CP040505.1|WP_005962337.1|275885_276803_+|pantoate--beta-alanine-ligase
MTHRPVLTRTREELAAALADLKGTRALVMTMGALHKGHLQLVKRAKELGDHVVVTIFVNPTQFAPGEDFDAYPRTLDADMAALESVGADLVWAPSPEDAYPEPVDLSIDPGRIAHVLEGTARPTHFAGVALVCTKVVGLVRPDVALFGEKDAQQLAVLRHVFSQLDVPVRVEGVPIVRDTDGVALSSRNRYLLEDERVRARSLSKGLEAGREAAANGASAEQAVTAVLQVLETTGGIDVDYVALVDEGTFDILAGTPGVALVTEKDARPATMVEGGRACRILLAAKVGTTRLIDNLPVILEVERG
>NZ_CP040505.1|WP_005962336.1|276813_277248_+|aspartate-1-decarboxylase
MEVMRPMIQGKIHRARVTGADLHYVGSVTIDEDLLDAANIVEGQRVDIADIDNGKRLSTYTIAGPRGSGVVQLNGAAAHLVSVDDLVIIMAYCQVPESQVRGWKPAVAFVDEHNRIIETGDSAGRVPEESERARELGLKSAGKP
>NZ_CP040505.1|WP_138588740.1|277434_277626_+|hypothetical-protein
MIPPSMEADEVSEAIETIATRLIGASTELSGLCATACENMSEVVTSAELDEENIAEAFRRLEV

Crispr_ID: NZ_CP040505_13

• CRISPR_ID: NZ_CP040505_13
• CRISPR_location: 284999-285099
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP040505_13

Consensus_repeat	Method
AGACGTTGACGTACACGAGACCTGTTGAGAACACTCC	CRISPRCasFinder

spacers of NZ_CP040505_13

>13.1|285036|27|NZ_CP040505|CRISPRCasFinder
CGCCCCCACCTTTCCCTTCCACGGGTG

CRISPR arrays and Neighbor proteins around NZ_CP040505_13

CRISPR arrays

The CRISPR arrays of NZ_CP040505_13

>merge|NZ_CP040505|13|284999-285099|CRISPRCasFinder
AGACGTTGACGTACACGAGACCTGTTGAGAACACTCCCGCCCCCACCTTTCCCTTCCACGGGTGAGACGTTGACGTATACGAGACCTGTTGAGAACACTCC

>NZ_CP040505|13|12|284999-285099|CRISPRCasFinder
AGACGTTGACGTACACGAGACCTGTTGAGAACACTCC	CGCCCCCACCTTTCCCTTCCACGGGTG
AGACGTTGACGTATACGAGACCTGTTGAGAACACTCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_040313548.1|290919_291720_+|aquaporin-family-protein	unknown	unknown	gnl|CDD|223653
NZ_CP040505.1|WP_138588740.1|277434_277626_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962325.1|282418_284008_+|lysine--tRNA-ligase	unknown	unknown	gnl|CDD|234778
NZ_CP040505.1|WP_005962314.1|294447_294825_+|cold-shock-domain-containing-protein	unknown	unknown	gnl|CDD|239905
NZ_CP040505.1|WP_005962316.1|291915_293442_+|glycerol-kinase-GlpK	unknown	unknown	gnl|CDD|234594
NZ_CP040505.1|WP_005962315.1|293533_294103_+|NYN-domain-containing-protein	unknown	unknown	gnl|CDD|350235
NZ_CP040505.1|WP_005962319.1|289544_290489_-|sugar-binding-family-transcriptional-regulator	unknown	unknown	gnl|CDD|225263
NZ_CP040505.1|WP_131247176.1|279117_279351_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962339.1|272819_274922_+|PH-domain-containing-protein	unknown	unknown	gnl|CDD|225962
NZ_CP040505.1|WP_005962336.1|276813_277248_+|aspartate-1-decarboxylase	unknown	unknown	gnl|CDD|376751
NZ_CP040505.1|WP_005962321.1|287500_288289_-|(Fe-S)-binding-protein	unknown	unknown	gnl|CDD|223325
NZ_CP040505.1|WP_040313549.1|284143_284854_+|hypothetical-protein	unknown	unknown	gnl|CDD|172294
NZ_CP040505.1|WP_005962313.1|294817_295612_+|DUF3027-domain-containing-protein	unknown	unknown	gnl|CDD|378605
NZ_CP040505.1|WP_005962322.1|285939_287499_-|iron-sulfur-cluster-binding-protein	unknown	unknown	gnl|CDD|224062
NZ_CP040505.1|WP_083879448.1|278347_279064_+|ImmA/IrrE-family-metallo-endopeptidase	unknown	unknown	gnl|CDD|368753
NZ_CP040505.1|WP_005962323.1|285283_285943_-|lactate-utilization-protein-C	unknown	unknown	gnl|CDD|224473
NZ_CP040505.1|WP_005962337.1|275885_276803_+|pantoate--beta-alanine-ligase	unknown	unknown	gnl|CDD|376824
NZ_CP040505.1|WP_005962340.1|272340_272823_+|PH-domain-containing-protein	unknown	unknown	gnl|CDD|225937
NZ_CP040505.1|WP_005962338.1|274918_275791_+|DUF2520-domain-containing-protein	unknown	unknown	gnl|CDD|227782
NZ_CP040505.1|WP_005962320.1|288966_289548_-|amino-acid-N-acetyltransferase	unknown	unknown	gnl|CDD|236132

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_040313548.1|290919_291720_+|aquaporin-family-protein	gnl|CDD|223653	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism].	4.17663e-57
NZ_CP040505.1|WP_040313549.1|284143_284854_+|hypothetical-protein	gnl|CDD|172294	PRK13756, PRK13756, TetR family transcriptional regulator.	5.5581e-06
NZ_CP040505.1|WP_005962325.1|282418_284008_+|lysine--tRNA-ligase	gnl|CDD|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP040505.1|WP_005962314.1|294447_294825_+|cold-shock-domain-containing-protein	gnl|CDD|239905	cd04458, CSP_CDS, Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.	3.86326e-21
NZ_CP040505.1|WP_005962316.1|291915_293442_+|glycerol-kinase-GlpK	gnl|CDD|234594	PRK00047, glpK, glycerol kinase GlpK.	0
NZ_CP040505.1|WP_005962319.1|289544_290489_-|sugar-binding-family-transcriptional-regulator	gnl|CDD|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	9.66936e-77
NZ_CP040505.1|WP_005962315.1|293533_294103_+|NYN-domain-containing-protein	gnl|CDD|350235	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins. This subfamily contains Synechococcus elongatus PCC 7942 LabA which participates in cyanobacterial circadian timing, it is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system, and appears to be necessary for KaiC-dependent repression of gene expression. This subfamily belongs to the LabA-like domain family which includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Also included in the LabA-like domain family are human ZNF451, uncharacterized Bacillus subtilis YqxD, uncharacterized Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously Pseudomonas putida S16 NicB , which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.36461e-05
NZ_CP040505.1|WP_005962339.1|272819_274922_+|PH-domain-containing-protein	gnl|CDD|225962	COG3428, COG3428, Predicted membrane protein [Function unknown].	2.26712e-35
NZ_CP040505.1|WP_005962336.1|276813_277248_+|aspartate-1-decarboxylase	gnl|CDD|376751	pfam02261, Asp_decarbox, Aspartate decarboxylase. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme aspartate decarboxylase EC:4.1.1.11 which requires a pyruvoyl group for its activity. It is synthesized initially as a proenzyme which is then proteolytically cleaved to an alpha (C-terminal) and beta (N-terminal) subunit and a pyruvoyl group. This family contains both chains of aspartate decarboxylase.	1.11236e-69
NZ_CP040505.1|WP_005962321.1|287500_288289_-|(Fe-S)-binding-protein	gnl|CDD|223325	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion].	2.87251e-56
NZ_CP040505.1|WP_005962313.1|294817_295612_+|DUF3027-domain-containing-protein	gnl|CDD|378605	pfam11228, DUF3027, Protein of unknown function (DUF3027). This family of proteins with unknown function appears to be restricted to Actinobacteria.	2.67014e-99
NZ_CP040505.1|WP_005962322.1|285939_287499_-|iron-sulfur-cluster-binding-protein	gnl|CDD|224062	COG1139, COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion].	0
NZ_CP040505.1|WP_083879448.1|278347_279064_+|ImmA/IrrE-family-metallo-endopeptidase	gnl|CDD|368753	pfam06114, Peptidase_M78, IrrE N-terminal-like domain. This entry includes the catalytic domain of the protein ImmA, which is a metallopeptidase containing an HEXXH zinc-binding motif from peptidase family M78. ImmA is encoded on a conjugative transposon. Conjugating bacteria are able to transfer conjugative transposons that can, for example, confer resistance to antibiotics. The transposon is integrated into the chromosome, but during conjugation excises itself and then moves to the recipient bacterium and re-integrate into its chromosome. Typically a conjugative tranposon encodes only the proteins required for this activity and the proteins that regulate it. During exponential growth, the ICEBs1 transposon of Bacillus subtilis is inactivated by the immunity repressor protein ImmR, which is encoded by the transposon and represses the genes for excision and transfer. Cleavage of ImmR relaxes repression and allows transfer of the transposon. ImmA has been shown to be essential for the cleavage of ImmR. This domain is also found in in metalloprotease IrrE, a central regulator of DNA damage repair in Deinococcaceae, HTH-type transcriptional regulators RamB and PrpC.	1.73073e-16
NZ_CP040505.1|WP_005962323.1|285283_285943_-|lactate-utilization-protein-C	gnl|CDD|224473	COG1556, COG1556, Uncharacterized conserved protein [Function unknown].	4.9332e-36
NZ_CP040505.1|WP_005962337.1|275885_276803_+|pantoate--beta-alanine-ligase	gnl|CDD|376824	pfam02569, Pantoate_ligase, Pantoate-beta-alanine ligase. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (EC:6.3.2.1) catalyzes the formation of pantothenate from pantoate and alanine.	1.58437e-122
NZ_CP040505.1|WP_005962340.1|272340_272823_+|PH-domain-containing-protein	gnl|CDD|225937	COG3402, COG3402, Uncharacterized conserved protein [Function unknown].	1.16574e-20
NZ_CP040505.1|WP_005962338.1|274918_275791_+|DUF2520-domain-containing-protein	gnl|CDD|227782	COG5495, COG5495, Uncharacterized conserved protein [Function unknown].	2.92687e-35
NZ_CP040505.1|WP_005962320.1|288966_289548_-|amino-acid-N-acetyltransferase	gnl|CDD|236132	PRK07922, PRK07922, amino-acid N-acetyltransferase.	1.45472e-91

Protein sequences

>NZ_CP040505.1|WP_040313549.1|284143_284854_+|hypothetical-protein
MAAKTTKTAASRGEKRSKGRPARIDRHKILEAARALAPEDVTMQSVADILGVDPTALNYHVGGKREFMQLIALDRASMSLDVLAELTEGDWESLLRGFASGMRASVASIGPLARYLEFDSRLALGYMISIEKALETLVEAGLSSADALRSISLVAHLAAHTGKRDTMCDSSGAQGLHGNGVKTLLEGEAGTDLPIIRALLKGEYPGFAPEDPASADLQFTFELDTIIEGIRSRMSC
>NZ_CP040505.1|WP_005962325.1|282418_284008_+|lysine--tRNA-ligase
MTDVNQNPAPEADDTPEQVKVRQEKRARLLADGRQAYPVVLAITSTIAEIREKYSHLEAGDETQDEVGIAGRVMLARNGGKLCFATLMDGEGNRIQVMLSAAEVGLESLAQYKADVDLGDHLFIHGRVISSRRGELSVLACPGTAPAGLFTPGIGEGDPVPAWQIAAKSIRPLPKTYTAEDGTEVSLSEDMRVRRRYLDMIVRPAARDMVRTRSKVVKSLRDYFDEAGFIEIETPMLQNLHGGAAARPFSTHMNAYDTDLFLRIAPELFLKRAVVGGIDKVFEINRNFRNEGADSSHSPEFTMLEAYEAYGSYDTMARRTREFVQKAARDALGTELVTLSDGSLYDLSGSWAEISMFEATAEALGREFNVDTPLEELVKIAEELGEDVADHWGPGKVAEVIFEAAVGDKLWAPTFVRDYPEDSSPLTRGHRSKKGIVEKWDLYVRGFELATAYSELVDPVIQRQRFEAQALAAANGDPEAMVLDEDFLMAMEYGMPPAGGMGMGLDRLLMALTGHGIRETITFPLVKKL
>NZ_CP040505.1|WP_131247176.1|279117_279351_+|hypothetical-protein
MSRDERLPSADRGDPFGFDSSFEEEVSRRFSALSKAAEEVSGRRKNLANQRSFKKRKNRTLRISLVRKEMTSHSTRR
>NZ_CP040505.1|WP_083879448.1|278347_279064_+|ImmA/IrrE-family-metallo-endopeptidase
MGRVAVSEQTVGGSLPGTLSGSYRAARAGGDGEGSGQPVSEVFNGAGGFCLNSDLNLEQLYSEAEYFAERILENFWDSVFPVDVVSIASEIPIVIRYVDFPGETIGLIIKRANDRDPTIFLDSDMTSQRRRFTIAHEIGHYVEHYHLEKKASDVPFWYDDPEKLGTEFHRARIPTPSGDPDTRRSEQFADAFAHALLMPSWEVETFAGLGMTKESVARYFGVSVTTMLNRLRMLGIEL
>NZ_CP040505.1|WP_138588740.1|277434_277626_+|hypothetical-protein
MIPPSMEADEVSEAIETIATRLIGASTELSGLCATACENMSEVVTSAELDEENIAEAFRRLEV
>NZ_CP040505.1|WP_005962336.1|276813_277248_+|aspartate-1-decarboxylase
MEVMRPMIQGKIHRARVTGADLHYVGSVTIDEDLLDAANIVEGQRVDIADIDNGKRLSTYTIAGPRGSGVVQLNGAAAHLVSVDDLVIIMAYCQVPESQVRGWKPAVAFVDEHNRIIETGDSAGRVPEESERARELGLKSAGKP
>NZ_CP040505.1|WP_005962337.1|275885_276803_+|pantoate--beta-alanine-ligase
MTHRPVLTRTREELAAALADLKGTRALVMTMGALHKGHLQLVKRAKELGDHVVVTIFVNPTQFAPGEDFDAYPRTLDADMAALESVGADLVWAPSPEDAYPEPVDLSIDPGRIAHVLEGTARPTHFAGVALVCTKVVGLVRPDVALFGEKDAQQLAVLRHVFSQLDVPVRVEGVPIVRDTDGVALSSRNRYLLEDERVRARSLSKGLEAGREAAANGASAEQAVTAVLQVLETTGGIDVDYVALVDEGTFDILAGTPGVALVTEKDARPATMVEGGRACRILLAAKVGTTRLIDNLPVILEVERG
>NZ_CP040505.1|WP_005962338.1|274918_275791_+|DUF2520-domain-containing-protein
MSAGRLGIGLIGVGKSGPIIASSLRAAGHEIIGVAARSAEAVERADAFLPGVPVLPIEEIVAQSELVLLALPDEEIAPLVAGLAELGAWKMGTILVHLAGPYGTGILAPAHAQGAIPVAIHPTIRFTGWSVDLQRLTGAPFLVTAPGPFLPIAQALVVEMGGEPIIIEEDARPGVHAALTLGVNGIAMGVIRAFEALKAQGIEEPSLIAGPLFGQTTDVALSEGEAAIAAPITRADAEVVRSHVKALATLGDDALNAYEAGVRDAVTMLLCRARLNERDADAVRSALLEG
>NZ_CP040505.1|WP_005962339.1|272819_274922_+|PH-domain-containing-protein
MSAGGGAAPKIRATEGAIAEGQWRRLHPLSPLIKAWKGVTVLLAIVLFQNTNLFVNTLSSNYAHSLGTGRIVLIAVGGLLGLVLILGLISYLSWRVTRFAVTDSGVYYRSGILLRTLKQARLERIQGVDIQHPLLGRVFGLGTIDIEVAGGAGSKVAFGFLKTQELEDLRAEILARASGVFSDATVAQAGSFAPHHSKAGVPVPGTNAGYGEGTPLPPAGASSPSATAGMTPRRFAPSAPERVLYKVPSGRLLGSLILTSGVFVGVLVLLAVLVGVGVLTTLIGAGGLSGVVGLLPILLAMGAIVWKRFAGEFNFTGAVSPDGIRTRSGLLETRSQTIPPNRIHAVRIQRPLLWRWVGWYRVTITQAGFAVQNQEETKKGFSTDLLLPVGTRADAELALWLVVRDLGVPDPQAFMSAALDGTGEGVGFIPVSTRARILDPLVKKRRAVALTQTCLVIRDGWLSWDLSVIPVERVQSLKLAQGPLERRLSLADVEAQIVPGTTPCRARHLDVSAAVALSEGLRERARIRRTKEPPERWLSRVQSRLDFEGRTGVIGEAGAVLPSGAQSASSMAGGQSRLYSQPGVIPSAVQSPPLMPYPQGGQPMPYPQNGQPMPYPQGGQPAAQAPSGQPALNGLTTPFPSAGQAGPFPQATTQPQIAHPAPIPPNGQPAPLPPNGQAGPIPEIPPQASSAQPPFAEEHS
>NZ_CP040505.1|WP_005962340.1|272340_272823_+|PH-domain-containing-protein
MTDPMAPVGLEFHPVSQKLALVRIISSMLGLLPVLIASVVAARLLTPLFWIVFAVFVCVSVWDLWFISRQVKAMAFALAGDEFCIRKGIMFRRLTLIPYGRIQYIEISEGPIARMFGIAEIKVHTASAHTDATLNGVPVDEAVRLRDMLAERGSAELAGL
>NZ_CP040505.1|WP_005962323.1|285283_285943_-|lactate-utilization-protein-C
MNAREEILATLRTARDASQPGAPKDEVVRDYMCETEDAPGSRPVLDFFIEMLGDYHVAVHEVTADKIPATIDKVLKEKEAPSVVVPAGLDATWRKAAGKGRTLRVDSIEKPCTKEELDQTLAVVTASRTAIAQSGTIILDGEPDQGRRIISLLPDLHLCVVNASTVQPTVPQAVAIVGEHPTRPITWIAGGSATSDIELVRVDGVHGPRTLVVLLVTDR
>NZ_CP040505.1|WP_005962322.1|285939_287499_-|iron-sulfur-cluster-binding-protein
MARKHVNPKSDVTWTPSADAPEEPLKWGEGFPKAAAKTLRNTQMRRNLTHATTTIRNKRALRVSETPDWEELRLAGSSIKNRVMSRLPELLEEMERNVTARGGIVHWARDAAEANAIAYQIAASKGVDEVVKVKSMVTQEIGLNEYFAERGISAWETDLAEMIVQLSDDMPSHIVVPAIHRNRSEVRAIFKARMGDAPENLGDEPVELAAAARAHLRKKFLSAKVAISGSNMMIAESGTLTVFESEGNGRMCLTLPETLISIVGIEKMVPTFRDAEVMAQLLPRSATGERMNPYTSMWTGVTPGDGPQEFHLILLDNGRSRVLADPIGRQALHCIRCGSCMNVCPVYEHVGGHAYQSVYPGPIGAILTPQLRGAFDHNDPASTLPFASSLCGACYDACPMRINIPEVLVELRHRAVEAQRGGIPTVWDVAMGAAKIPMSSGPLMKAAGKLMPLGRKIAGSDRRLVNLPWPATAWSTSRDVPAPPSKTFRQWMAEHQKEQGCTACSCTPTTRIDEEGAQL
>NZ_CP040505.1|WP_005962321.1|287500_288289_-|(Fe-S)-binding-protein
MRIALFATCVGDLMFPQAPQATVHLLERLGHEVVFPESQGCCGQMHINTGYFPEAVPLIKNHVKTFEPVLDGEWDAIVVPSGSCTGSLRHQPEMVAKSEGMPGMAKRASQIAKKTYDLSELLVDVLGLTDVGAYFPHRVTYHPTCHSMRIARVGDRPYQLLKAVEGITLVDLPEAESCCGFGGTFSMKNHQTSTAMLADKMANVKSTKAEILTAGDYSCLMHIAGGLSRQRAGIRAMHLAEILAGTKDQPWEADETTTKLGA
>NZ_CP040505.1|WP_005962320.1|288966_289548_-|amino-acid-N-acetyltransferase
MSIRIRDARPKDARRIAELTTPYAMRRILLHKELIAYFEDIQEFVVAIDEETNALVGCGALHVMWDDIAEIRTLAVAPEFLHKGIGSAILESLLARAQKLGLQRVFCLTFEVDFFARHGFYEISGTPVGEDAFLEMLRSHDDGVKEFLDLASYKPNTLGNTRMLRNLESSPLSKATNAHGTDSVQVPAHSSGA
>NZ_CP040505.1|WP_005962319.1|289544_290489_-|sugar-binding-family-transcriptional-regulator
MYYLQGQTMETIARHLGVSRSSVSRLLSYARETGLVRISVSAAPGNKGTLSGQISEIFGVQTSVVPVHDVHTEVNRLHNVSLVAAERLIDMLKPGVTLGIAWGNTTSEITRCMPRVNFPGSTVVQLNGAATATESGMPYADAIISRAARAIGGRMVHFPVPTFFDYAETKDALWRERSVQAVLKTIEDCDIALFGIGSLSARLPSHVYSGGFLDTEELAAAQRDGVVGDVCTVLLREDGSTDMALNSRASGPTPETLRRIPRRLCVVAGASKALPLLGALRAKVITDLVLDDGAARELLELVRSCAVQAKGTGR
>NZ_CP040505.1|WP_040313548.1|290919_291720_+|aquaporin-family-protein
MLATLLPMAPQEVTMTQIFMSEFMGTAVLLLLGGGVVATNLLPKSKGRNGGWLLINWGWGLAVLAGVYVAYGTGGHLNPAVTIAKVVGHMFNPEVTLNGPALAEGGIPVTVANVVVYIVAEFLGAFVGAILCWLTFKQHFDEDLDPALKLGVFSTAPEIRSYGWNTLTEAIGTAVLILWIWVSGYTQTAIGPLAVALIIVVIGNSLGGPTGYAINPARDLGPRVAHAILPIKGKGGSDWGYSWVPVVGPTIGAIVGTVIAFVTGLA
>NZ_CP040505.1|WP_005962316.1|291915_293442_+|glycerol-kinase-GlpK
MSEEKFVLAIDQGTTSSRAIIFNHSGEIVAVGQKEFTQIFPNPGWVEHDPVEIWESVRAVVASALQKAEINASHLVAVGITNQRETTIVWDKNTGEPVYNALVWQDVRTGDIAREIAAGDPLGTERYRQITGENISTYPSATKVKWILDNVEGARERAEAGDLLFGTPDTWVLWNLTGGVNGGVHATDVTNASRTLLMDVRELKWREDICKDFGIPMSMLPEIKPSAAIYGKGRSNGLLAGVPISGILGDQQAATFGQACFEPGATKNTYGTGCFTLMNTGTEPVFSKNGLLTTVLYQLGDEAPVYALEGSVAVAGSLVQWLRDNLGMIVKSSDIGALAESVKDNGGVYFVPAFSGLFAPYWRDDARGAIVGLTRYVNKGHIARAVEESTAFQSAELIEAMNADAGVPLKELKVDGGMTHDELLMQFQADISGCDVVRPVVAETTALGVAYAAGIAVGFWSSTEDVVANWQEGKRWSPSMDKAERDRTYRLWKKAVTRTFDWVDEDVK
>NZ_CP040505.1|WP_005962315.1|293533_294103_+|NYN-domain-containing-protein
MYSSNGKTYLIVDGENIDATLGLSVLERRPSPEERPRWDRVLEGARRAFDEEAKGLFFLNGSSGALPMGFVQALTAMDYTVIPLSGPEDVKVVDVGLQRTMEAIGELESGDVILASHDADFVPQVEHLLDLGRNVAVMCFREFLASGLHELEEKGLKVIDLEYDVHAFQVTLPRLRIIDVDDFNPFDFL
>NZ_CP040505.1|WP_005962314.1|294447_294825_+|cold-shock-domain-containing-protein
MPTGKVKFFDAERGFGFIGGDDGVEVFLHASALPEGAAAPKPGTRVEYGVADGRKGPQALTVKILSPTRSVSAARRRKPQAMVPVVEDLIKLLDASSTALRNGKYPENSRAIAKVLRAVADDFDA
>NZ_CP040505.1|WP_005962313.1|294817_295612_+|DUF3027-domain-containing-protein
MPKEATRAVRTRAPKIDQVLAKAVDVARQSAEALAYPRPIGEHLGFTMDAERLGTHWFASSDPGYVGWAWAVTLARVARSRTATVCEVDMIPREGALLAPEWVPWEERLRPGDLSREDALPYQAEDARLEQSFEDVGDDPDIAQFAEIGLGRKRVLSDEGRQAAVTRWYKSDQGPKPGRPPKNTCSTCGFLVKMSGSMRTMFGVCANEWAPDDGRVVSLDHTCGAHSETDVPKQASVWTVRPSRVDDSAVVSEPMPKAGPAPQE

Crispr_ID: NZ_CP040505_14

• CRISPR_ID: NZ_CP040505_14
• CRISPR_location: 314256-314467
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 3 spacers

Consensus repeat of NZ_CP040505_14

Consensus_repeat	Method
CTCGTCCCCGCCGGCGCGCGTGGGTTCC	CRISPRCasFinder

spacers of NZ_CP040505_14

>14.1|314284|33|NZ_CP040505|CRISPRCasFinder
CTGCGTAGGCGATACGGGGTTTCGTGGTTCCGC
>14.2|314345|34|NZ_CP040505|CRISPRCasFinder
GATCACCTGCAGCGCATCAAGGAACTCGAAGAGC
>14.3|314407|33|NZ_CP040505|CRISPRCasFinder
TGACCTGGCCGCCGACCTTCACCTTGGCGGGCG

CRISPR arrays and Neighbor proteins around NZ_CP040505_14

CRISPR arrays

The CRISPR arrays of NZ_CP040505_14

>merge|NZ_CP040505|14|314256-314467|CRISPRCasFinder
CTCGTCCCCGCCGGCGCGCGTGGGTTCCCTGCGTAGGCGATACGGGGTTTCGTGGTTCCGCCTCGTCCCCGCCGGTGCGCGTGGGTTCCGATCACCTGCAGCGCATCAAGGAACTCGAAGAGCCGCGTCCCCGTCCGTGGGCATGGGCTCCTGACCTGGCCGCCGACCTTCACCTTGGCGGGCGCTGATTCCCGTCCGTGCGCGTGGGCTCC

>NZ_CP040505|14|13|314256-314467|CRISPRCasFinder
CTCGTCCCCGCCGGCGCGCGTGGGTTCC	CTGCGTAGGCGATACGGGGTTTCGTGGTTCCGC
CTCGTCCCCGCCGGTGCGCGTGGGTTCC	GATCACCTGCAGCGCATCAAGGAACTCGAAGAGC
CGCGTCCCCGTCCGTGGGCATGGGCTCC	TGACCTGGCCGCCGACCTTCACCTTGGCGGGCG
CTGATTCCCGTCCGTGCGCGTGGGCTCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005962305.1|306008_306503_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_040314467.1|302245_303361_+|IS1249-family-transposase	unknown	unknown	gnl|CDD|307151
NZ_CP040505.1|WP_005962295.1|317489_318719_+|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl|CDD|238452
NZ_CP040505.1|WP_138588742.1|303382_304480_-|site-specific-integrase	unknown	unknown	gnl|CDD|271189
NZ_CP040505.1|WP_005962294.1|318968_319757_+|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|224584
NZ_CP040505.1|WP_040313766.1|313944_314100_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962299.1|314642_315029_-|large-conductance-mechanosensitive-channel-protein-MscL	unknown	unknown	gnl|CDD|376605
NZ_CP040505.1|WP_005962296.1|316563_317493_+|UTP--glucose-1-phosphate-uridylyltransferase	unknown	unknown	gnl|CDD|224131
NZ_CP040505.1|WP_040313547.1|300693_301623_+|universal-stress-protein	unknown	unknown	gnl|CDD|366180
NZ_CP040505.1|WP_051057800.1|320462_321356_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_040313546.1|304466_304652_-|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl|CDD|378935
NZ_CP040505.1|WP_005962298.1|315055_315676_-|hypothetical-protein	unknown	unknown	gnl|CDD|274472
NZ_CP040505.1|WP_005962290.1|324205_325141_-|hypothetical-protein	unknown	unknown	gnl|CDD|379384
NZ_CP040505.1|WP_131247174.1|304641_305682_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_051057801.1|306499_307732_-|hypothetical-protein	unknown	unknown	gnl|CDD|224588
NZ_CP040505.1|WP_005962303.1|307830_308247_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962302.1|308827_309151_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_131247277.1|325140_327276_-|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	unknown	unknown	gnl|CDD|226036
NZ_CP040505.1|WP_040313764.1|315850_316360_-|hypothetical-protein	unknown	unknown	gnl|CDD|274270
NZ_CP040505.1|WP_040313542.1|323797_324124_-|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_040314467.1|302245_303361_+|IS1249-family-transposase	gnl|CDD|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	2.7274e-07
NZ_CP040505.1|WP_005962295.1|317489_318719_+|molybdopterin-molybdotransferase-MoeA	gnl|CDD|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	5.63926e-128
NZ_CP040505.1|WP_005962298.1|315055_315676_-|hypothetical-protein	gnl|CDD|274472	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB. Members of this protein family are the CpaB protein of Flp-type pilus assembly. Similar proteins include the FlgA protein of bacterial flagellum biosynthesis.	6.72098e-05
NZ_CP040505.1|WP_005962294.1|318968_319757_+|GNAT-family-N-acetyltransferase	gnl|CDD|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	9.98233e-19
NZ_CP040505.1|WP_005962299.1|314642_315029_-|large-conductance-mechanosensitive-channel-protein-MscL	gnl|CDD|376605	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL.	2.75496e-41
NZ_CP040505.1|WP_005962296.1|316563_317493_+|UTP--glucose-1-phosphate-uridylyltransferase	gnl|CDD|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	5.80071e-121
NZ_CP040505.1|WP_040313547.1|300693_301623_+|universal-stress-protein	gnl|CDD|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	5.89087e-23
NZ_CP040505.1|WP_040313546.1|304466_304652_-|helix-turn-helix-domain-containing-protein	gnl|CDD|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	1.87864e-06
NZ_CP040505.1|WP_138588742.1|303382_304480_-|site-specific-integrase	gnl|CDD|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	3.44145e-24
NZ_CP040505.1|WP_131247277.1|325140_327276_-|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	gnl|CDD|226036	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion].	1.8581e-08
NZ_CP040505.1|WP_005962290.1|324205_325141_-|hypothetical-protein	gnl|CDD|379384	pfam13814, Replic_Relax, Replication-relaxation. This family includes proteins which are essential for plasmid replication and plasmid DNA relaxation.	8.19007e-36
NZ_CP040505.1|WP_051057801.1|306499_307732_-|hypothetical-protein	gnl|CDD|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	9.42038e-16
NZ_CP040505.1|WP_040313764.1|315850_316360_-|hypothetical-protein	gnl|CDD|274270	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism. [Central intermediary metabolism, One-carbon metabolism].	1.63384e-22

Protein sequences

>NZ_CP040505.1|WP_040313766.1|313944_314100_+|hypothetical-protein
MIDKGLAPSWEDRVTDADIRPGSMRDSPDRGDGANDRRLMENVPPHAQARA
>NZ_CP040505.1|WP_005962302.1|308827_309151_-|hypothetical-protein
MNEPRHPTVDEVVSSLQEVFAPGGLSVLPVFVDDSPWEPTIVEPIRVQGRIDLAATLDEALPYFGTVCVLAVGSNGGRRTCDGLVLIGREIAFIPIAVSPGWLRGDQ
>NZ_CP040505.1|WP_005962303.1|307830_308247_-|hypothetical-protein
MVNINLKNLPVDASVLGTEIWAKPGQVPALTEFQQDRNAPDVQRKTDEGVPLWRLTAFILDPETTERNSVTTIKIASKTPPVVPARGGFPLTRVTFEGLMATPWISDRDGRSRMQYSFTATGVHPVPDGAPQSGRDAS
>NZ_CP040505.1|WP_051057801.1|306499_307732_-|hypothetical-protein
MVLKLLDAGWPWWDMLAVALCMALLRSPLWKRFLERRRFRRAVRQMTSGWTRAAWAAGVVRADVVPLLEVETVSADLSHWEGRLILPAGMVPEDVSALADRLESALGAVSVRVMRRSGPCPGIVIDYVPRLVTPVAPGPLGGLADLACVPIGVTVDGSPFLLRLRGSQVLIAGQSGSGKGSFLWSILWALAERLRDGSVQVWTIDAKGGLELASGRPLFAEFATSPSGAADLLDKAAAAMRLRARVMAGRSRLHEPTRESPHVVILIDELAALTAYNRDSKERKRIEAALGELLTQGRALGFTVVACVQDPSKEVLGLRQLFFERVALRLAEGSQIPMVLGAGAQAAGARPDLIPNDRPGMAYLVADKADGPVLGRAFWISDQHIEFLTEQAVPTQIAGTDLDHTKETIS
>NZ_CP040505.1|WP_005962305.1|306008_306503_-|hypothetical-protein
MKKTNRFVASAAALVLVGAGIVGADYALTAHDRSVFAAGARGLAEAVSDAGCNLGFDPATGLPTDGGRIVSGSEVVTASSGCSADIFDAWTSRRLAVESNGACVSDWAGHADLRRACLPQLREIRPHRDSVPLTGLRVYSLGGSLLVFPCEVKEAARGCEEWSR
>NZ_CP040505.1|WP_131247174.1|304641_305682_-|hypothetical-protein
MVFLTLTAPSFGAVHRACRPGEQCHLKAASGVCPHGVPRRCTACHDPDSEIVGMPLCPECYDYAGHVLWNWSARDLWHRFPTAMVRALASLLGVTQRSLTPVLKLRFLKVVEFQRRGAVHLHVVVRADAIAQGVGAWSDRVTSDLLAEAARMSAAGVEVMTIPIDEVDEPRRIRFGRQVDVQAIGDAAHQRSPEQLAAYLAKYSTKSVGDSPGGRQNGHFCRLRDCTRELASRAELGSHRDEYAHLRRCAQELAFRGHVVSKSPDFSTTMRALREARARYRRTTYGDVLIEDSDDFLTVSAFEFAGMGWLTSIEKELVEAAGEAKRERSRKRRSRSSTKEVVSHAC
>NZ_CP040505.1|WP_040313546.1|304466_304652_-|helix-turn-helix-domain-containing-protein
MLAEARPLFVRVPVAARLLGMPPSTLYRLARRGDVPSRQVGSVVLIPRWWITEGSERDGAH
>NZ_CP040505.1|WP_138588742.1|303382_304480_-|site-specific-integrase
MALTRRVRPSGAVRWEVRVYSHGRIAAQKTFERRAEAKAWEAEQTARIRKGTWIDPRRGEATVASVAEAWQRSRDHLAPRSQETTRFLLDRDILPVLGKRPVASLTAADVTDVLERMTTRGLSVNTLRRTLSVLRLLLDYAVMDERIDVNVARKVTPPKGATVVEPHWLTVGQLGALASSVPAHCRVVVLALGLMGLRFSEMAGLQVRDAILTKHGWALRVHRPITESRVTSRLIEGPPKNRHSRTVPVPSALVEYVEGRCRAAPPDAPLFPTRRGSIWRGNNFRRACHWKETTEAIGVPGLRLHDLRHTAASLLIASGADIKATQRILGHRSAQMTVDLYGHLIDAHLWTAVDCLPSIDSGRGL
>NZ_CP040505.1|WP_040314467.1|302245_303361_+|IS1249-family-transposase
MNTASCPVCGGRMTRHGKTSAGRQRWRCTACNVTGLNEIDASAKHLGEFLSWLLSGARQADMPGGGRSFRRRCQHLWEVWPFAPVVDEVHEVVFVDGIHLGRKAVVVIAQTREHVVGWYVARTENSRAWEALMSRIAPPELVVTDGGSGFEKARKKIWPDSRVQRCTFHAFSKVKEATTTRPKLPASKELYALGKQLIRVTDLPQAEAWVEDYRGWCERWEAFLAEKTPRDDGGWEYTHERLVRARNSLNRLLARGVLFTFCDPTWGQAMPAMNNQIEGATNAPLRQMLRDHRGMRLTRRIKAIFWWCYMHTEHPLSAAQILKVMPTDTQIEQAWQQASRDHPAAGIIPQWGDAIAWHELHHHSPYRTDWD
>NZ_CP040505.1|WP_040313547.1|300693_301623_+|universal-stress-protein
MGSTEVTLVGVDGSKESLAAVKWAADRAIRFGGRVHVLCTYALASYSAAALDGGYAVLDDEALKRGAQQVVEEAVEIAKSRGEVRVSSSIEPGDPAGVLVEMSREVDLVVVGSRGGGSFADRLLGTVSSALPAHAQCPVVVVPRHTAGKKFMPVERIVVGVDGSEVPSSALRKAVDEAEGWGARLTAVSAVPIGSGTSMMAWTPNVDHSALLDNVRKGMGEAIDQALHGRTMEVARHALDGAPASLLIEFSTAVDLVVVGTRSRGGLAGVLLGSTSQTVLSHSTCPVMIVPSDHLGKAESAAAPDWGRR
>NZ_CP040505.1|WP_005962299.1|314642_315029_-|large-conductance-mechanosensitive-channel-protein-MscL
MIQGFKEFISKGNVLDLAVAVIIGASFTPIVKSVTDVIMGIIGAVVGQPNFDSVLQFSINGSDPIQPGTIITAIVNFLLVAFALYFAIVVPMNALKKRRAKEEAEKAEEPSEDVKLLGEIRDLLAEKN
>NZ_CP040505.1|WP_005962298.1|315055_315676_-|hypothetical-protein
MPSSFRRLAPTVLLILALVMALGALIVGFLPARGHHPVLVLSRNLSKGDAFGPEAVRKLEVPDELFPADALAPGTPLPDTWPSEPVKAGTILSESVLAGSALGRELAPDESLVTLMFDQSRLPPVEAGDVADLWALSGECDQSGCASRRVATNARISSISVKDAPAWDSSTSVRLDLIIKSTQVESLLGYSGAGALSLALSSSHKG
>NZ_CP040505.1|WP_040313764.1|315850_316360_-|hypothetical-protein
MEAWRGLLRSLCLTYADLLPALFLPTPTEPDIRLLFSAVSHCLVPALVGEDGCRLPDPAWVMWDAPSVEALPRPLEILGAPMSPEVLRQADIILLPALAVDEDGTRIGQGGGWYDRALKHARPGAPIVAVIFDDEWSAQPLPRLSHDVCVDAVVTPSGFRILTSDLSFA
>NZ_CP040505.1|WP_005962296.1|316563_317493_+|UTP--glucose-1-phosphate-uridylyltransferase
MTEQKPPVAHAVIPAAGRGTRFLPVTKAVPKEMLPIVDRPAIDYIMRELHDAGLEDVLFITRAGKQSIEDYFDADPALESELEKSGKDAFLALVKDYQELPGVHSVRQGHPLGLGHAILQAKAHVGDAPFVVMLPDDLMEPGAQLLRRMIEVRAALGGSVIALTKVTREQATAYASVACTPIDIPEGVQLAQGALVRIDEVVEKPKLEDVKSEYAVIGRYVLDAAVFDALETIEPGANNEYQLTDGYAKMIDLPAEEGGGVYGVVIDERRFDTGDKLGYLKATIAFALENPELGAELRAFLENELDGAR
>NZ_CP040505.1|WP_005962295.1|317489_318719_+|molybdopterin-molybdotransferase-MoeA
MRTVADFYQDCLAAVGQQPPLEVQLADAVSCVLAEDVEAPFDLPVADLAACDGYAVRSEDLVGARPKEEVELPVTEEIRAGDVNPAALVPGSAIRIASGAPMPAGSDSVIALDFTDRGLAKVRVRTQPAIGENIRRRAEDVERGEVVLRKGTRVGARQVALLAGVGRSRVLVHPRPRIVILSIGDEIVEPGSKARPGTVFDANGHALSTAVADAGAQTFRVAAVPDEPHLLRETIEDQLVRADLVLTTGGISYGSGDTVREVLSVLGTVRFDNVAAWPGHILGVGTVGGDEDGKNGIPIFCLPGDPVSAQVCFEVFVRPALRHMQGWTQLTRPSVKAAVDRAWYSPRGRREFVRVRLVGDPRNGYQAKVMGAPASLLLSALAESNALAVVPEATTNVRVGDMLQCLVLE
>NZ_CP040505.1|WP_005962294.1|318968_319757_+|GNAT-family-N-acetyltransferase
MKLDFFLRPFARVWGRPLDALRLEVFDPLGQGLLHAPRPLPPEASEHVDFRLGVVDSRPGVEGAPSSRETRRIDSVLIRPAWGRDHFRIDALRQDNAQWLRRWEASMPPESDEPIPDLGEYARRIDREQKRGRALILACEVDGVLAGQFSVSNVVWGAMSQGMLGYWLARDFVGRGLGALGSAMVIDLVIGELGLHRVEVDVCPENERSLGVCRRLGLREEGLRPRFMHINGAWADHLCFSIDRESLPEGGLVRSRILAEDD
>NZ_CP040505.1|WP_051057800.1|320462_321356_+|hypothetical-protein
MAQPSAKNSATRVDRRGSAAVKEIARLRARRAARLAAEAAAGQRRLLVSAIVALLTLIVAGAVVAASISWAWTLIPASMLTASLVASRIAAIHSEKIGAAELELLNELRSQAPQRRVKKSSAQGSENEDEDVAETEPPSDSAALALLRAAVEARANEVIERPTETIAVVATSRETRADEVVEASAEVSKDEAGEREAEAKEQGSDPDPIPATASVERCMWSVKSIPAPSYAMRGRVVGRAVHADTDLRGIPKVDARVPARPLQASVSGANALSTEDVVADQAVALDLDSVLDSRRAQ
>NZ_CP040505.1|WP_040313542.1|323797_324124_-|hypothetical-protein
MTPHQPEALAYTYGEHHEQDIRLIRDYCRMASISLLACFHDPCNETDGLLQLQAAMGPGISNIFTTNWPPQHLTEGQTSNLEKTLTAHGATIVHLRRGEAATSKGTHS
>NZ_CP040505.1|WP_005962290.1|324205_325141_-|hypothetical-protein
MNTINQSAPHGHQHHNKGGDCLPIHADIPPPSRLSRRHLQHLTDQLDQRAWHTLSFLAEHRFATTSQLARHHQDRHATAASALRQTSRLMRHLADQRLTAHLERRIGGQKAGSTGLIWYLTEAGYRILAIRAGNTTNRRHRQMEPSPTFMAHTLAITEARVQAEEAARTSAMHLIYIETEPLSWRRHLGAHGQIEWVKPDLALTTTLDGYEDHWWLEIDQGTEHPKRLLTKAHAYLRHYEDGSEQVTRGVHPAIVWVTATISRAHQIHDLIARRPELPDGMFTTCHIDHLGAVLTYDQHVAVENHWTIQAK
>NZ_CP040505.1|WP_131247277.1|325140_327276_-|type-IV-secretory-system-conjugative-DNA-transfer-family-protein
MVHRLVADPSLGTVIFETRATHSRIQYRIGADPARIETVARLVADLVPGVQLTTPTAVRTPVQVAARLSVSQPSMALDTSRVEALTRAVLAAMSGLDGNERLVIHIMIGRRLAPAVTDQPTRDRQSWWSLLNVGVQQASHTETARVAERRRRHGALVAIRLGATASTYAKANSLIERLFGGLRVAESVGVRLRLTREKPQGLCEARRPWRYPLHLNASEIACMCAWPIGEGELPGLPPMSPRILPPPSWLATSRHLIKGRSFATTTAPGESIPIGIGNSDSLLHTVLLGPTGSGKSTAMLHLILGDIHAGRAVVVIDPKNDLVTDILERIPVHRLDDVVVLDPTDPTPIGLNPLSCNSSSPELTVDTLLASFKALFADSWGVRTEEILTATLLTLARAGGKAATLVAIPSLLTDPAFRHSITRAVHDPLGVSAFWAKYETKSPEQQSTEIAPVLNKLQQFVIRPQMRAILGQTETKFNLADVFTKKKILLVSLNKGIIGTESARLLGSLLIGQLWPLILGRAKLPPQRRHLTSIYVDEVHDFIHGIPGDLADALAQSRSLGVAWHMAHQYRAQLTPTMRAAIDANARNKICFGLSASDARDMAASAPNLEALDFIRLPRFAIYSTTWITGRETGWISGATKPPPPPVRNAIEPRALSAQTYGTPAATTEAQLAAITGHGHPKHTARPAGQFGRKPATTANTNHDEPGDEPQ

Crispr_ID: NZ_CP040505_15

• CRISPR_ID: NZ_CP040505_15
• CRISPR_location: 372309-372402
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP040505_15

Consensus_repeat	Method
GGTGTTCCGCCTGAACGTACCTCCGATTCTGCT	CRISPRCasFinder

spacers of NZ_CP040505_15

>15.1|372342|28|NZ_CP040505|CRISPRCasFinder
CTTGACCACGCGCGCTGGGGTGGGCGGC

CRISPR arrays and Neighbor proteins around NZ_CP040505_15

CRISPR arrays

The CRISPR arrays of NZ_CP040505_15

>merge|NZ_CP040505|15|372309-372402|CRISPRCasFinder
GGTGTTCCGCCTGAACGTACCTCCGATTCTGCTCTTGACCACGCGCGCTGGGGTGGGCGGCGGTGTTCCGCCTGAACGTACCTGCGATTCTGCT

>NZ_CP040505|15|14|372309-372402|CRISPRCasFinder
GGTGTTCCGCCTGAACGTACCTCCGATTCTGCT	CTTGACCACGCGCGCTGGGGTGGGCGGC
GGTGTTCCGCCTGAACGTACCTGCGATTCTGCT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005962255.1|365024_365495_+|30S-ribosomal-protein-S7	unknown	unknown	gnl|CDD|235398
NZ_CP040505.1|WP_005962253.1|367868_369056_+|elongation-factor-Tu	unknown	unknown	gnl|CDD|234596
NZ_CP040505.1|WP_005962246.1|376959_377628_+|50S-ribosomal-protein-L3	unknown	unknown	gnl|CDD|234564
NZ_CP040505.1|WP_005962244.1|378270_378576_+|50S-ribosomal-protein-L23	unknown	unknown	gnl|CDD|235586
NZ_CP040505.1|WP_040313754.1|354069_357969_+|DNA-directed-RNA-polymerase-subunit-beta'	unknown	unknown	gnl|CDD|234794
NZ_CP040505.1|WP_005962260.1|360744_361869_-|DUF559-domain-containing-protein	unknown	unknown	gnl|CDD|380141
NZ_CP040505.1|WP_005962254.1|365588_367712_+|elongation-factor-G	unknown	unknown	gnl|CDD|234569
NZ_CP040505.1|WP_005962240.1|380136_380934_+|30S-ribosomal-protein-S3	unknown	unknown	gnl|CDD|234722
NZ_CP040505.1|WP_040313755.1|350578_354055_+|DNA-directed-RNA-polymerase-subunit-beta	unknown	unknown	gnl|CDD|234749
NZ_CP040505.1|WP_131247168.1|369452_372020_+|hypothetical-protein	unknown	unknown	gnl|CDD|380024
NZ_CP040505.1|WP_083879444.1|374087_375638_+|SpaH/EbpB-family-LPXTG-anchored-major-pilin	unknown	unknown	gnl|CDD|374625
NZ_CP040505.1|WP_026460007.1|364650_365025_+|30S-ribosomal-protein-S12	unknown	unknown	gnl|CDD|235355
NZ_CP040505.1|WP_003790631.1|376639_376948_+|30S-ribosomal-protein-S10	unknown	unknown	gnl|CDD|179076
NZ_CP040505.1|WP_005962242.1|379452_379734_+|30S-ribosomal-protein-S19	unknown	unknown	gnl|CDD|178985
NZ_CP040505.1|WP_005962245.1|377629_378274_+|50S-ribosomal-protein-L4	unknown	unknown	gnl|CDD|235404
NZ_CP040505.1|WP_005962251.1|372949_373924_+|class-C-sortase	unknown	unknown	gnl|CDD|320676
NZ_CP040505.1|WP_005962241.1|379763_380135_+|50S-ribosomal-protein-L22	unknown	unknown	gnl|CDD|234793
NZ_CP040505.1|WP_005962243.1|378599_379436_+|50S-ribosomal-protein-L2	unknown	unknown	gnl|CDD|236488
NZ_CP040505.1|WP_005962266.1|348562_349279_+|DNA-alkylation-repair-protein	unknown	unknown	gnl|CDD|132880
NZ_CP040505.1|WP_005962267.1|345531_348096_+|S8-family-peptidase	unknown	unknown	gnl|CDD|173793

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005962255.1|365024_365495_+|30S-ribosomal-protein-S7	gnl|CDD|235398	PRK05302, PRK05302, 30S ribosomal protein S7; Validated.	1.45878e-103
NZ_CP040505.1|WP_005962253.1|367868_369056_+|elongation-factor-Tu	gnl|CDD|234596	PRK00049, PRK00049, elongation factor Tu; Reviewed.	0
NZ_CP040505.1|WP_005962246.1|376959_377628_+|50S-ribosomal-protein-L3	gnl|CDD|234564	PRK00001, rplC, 50S ribosomal protein L3; Validated.	4.19738e-126
NZ_CP040505.1|WP_005962244.1|378270_378576_+|50S-ribosomal-protein-L23	gnl|CDD|235586	PRK05738, rplW, 50S ribosomal protein L23; Reviewed.	2.97137e-39
NZ_CP040505.1|WP_040313754.1|354069_357969_+|DNA-directed-RNA-polymerase-subunit-beta'	gnl|CDD|234794	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional.	0
NZ_CP040505.1|WP_005962260.1|360744_361869_-|DUF559-domain-containing-protein	gnl|CDD|380141	pfam18741, MTES_1575, REase_MTES_1575. Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase and wHTH.	3.33474e-07
NZ_CP040505.1|WP_005962254.1|365588_367712_+|elongation-factor-G	gnl|CDD|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	0
NZ_CP040505.1|WP_005962240.1|380136_380934_+|30S-ribosomal-protein-S3	gnl|CDD|234722	PRK00310, rpsC, 30S ribosomal protein S3; Reviewed.	1.63401e-143
NZ_CP040505.1|WP_040313755.1|350578_354055_+|DNA-directed-RNA-polymerase-subunit-beta	gnl|CDD|234749	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed.	0
NZ_CP040505.1|WP_131247168.1|369452_372020_+|hypothetical-protein	gnl|CDD|380024	pfam17802, SpaA, Prealbumin-like fold domain. This entry contains a prealbumin-like domain from a wide variety of bacterial surface proteins. This entry corresponds to domain 1 and domain 3 of SpaA from Corynebacterium diphtheriae. Some members of this family contain an isopeptide bond.	1.4936e-07
NZ_CP040505.1|WP_083879444.1|374087_375638_+|SpaH/EbpB-family-LPXTG-anchored-major-pilin	gnl|CDD|374625	pfam16555, GramPos_pilinD1, Gram-positive pilin subunit D1, N-terminal. GramPos_pilinD1 is the first subunit domain of Gram-positive pilins from Strep.pneumoniae. There are three major pilin subunits that form the polymeric backbone of the pilin from S. pneumoniae, constructed of three Ig-like, CnaB, domains along with a crucial N-terminal domain, D1. The three IG-like domains are stabilized by internal Lys-Asn isopeptdie bonds, but this N-terminal domain makes few contact with the rest of the molecule due to the different orientation of its G beta-strand. Strand G of D1 also carries the YPKN motif that provides the essential Lys residue for the sortase-mediated intermolecular linkages along the pilus shaft. Gram-positive pili are formed from a single chain of covalently linked subunit proteins (pilins), usually comprising an adhesin at the distal tip, a major pilin that forms the polymer shaft and a minor pilin that mediates cell wall anchoring at the base.	8.421e-07
NZ_CP040505.1|WP_026460007.1|364650_365025_+|30S-ribosomal-protein-S12	gnl|CDD|235355	PRK05163, rpsL, 30S ribosomal protein S12; Validated.	2.55094e-83
NZ_CP040505.1|WP_003790631.1|376639_376948_+|30S-ribosomal-protein-S10	gnl|CDD|179076	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed.	1.15949e-64
NZ_CP040505.1|WP_005962242.1|379452_379734_+|30S-ribosomal-protein-S19	gnl|CDD|178985	PRK00357, rpsS, 30S ribosomal protein S19; Reviewed.	2.40473e-64
NZ_CP040505.1|WP_005962245.1|377629_378274_+|50S-ribosomal-protein-L4	gnl|CDD|235404	PRK05319, rplD, 50S ribosomal protein L4; Provisional.	3.09439e-110
NZ_CP040505.1|WP_005962251.1|372949_373924_+|class-C-sortase	gnl|CDD|320676	cd05827, Sortase_C, Sortase domain found in class C sortases. Class C sortases are membrane-bound cysteine transpeptidases broadly distributed in Gram-positive bacteria (mainly present in Firmicutes and Actinobacteria). They function as pilin polymerases responsible for the assembly of pili, which are multi-subunit hair-like fibres that extend from the cell surface to promote microbial adhesion and biofilm formation. First, one or more class C sortases form the long thin shaft of the pilus through linking together pilin subunits via isopeptide bonds. The base of the pilus is then anchored to the cell wall by a housekeeping sortase or, in some cases, the class C sortase itself. Depending upon the organism both the number and type of sortase enzymes involved varies, and in some cases, accessory factors appear to be needed. In three-component spaA pilus from Corynebacterium diphtheriae, the prototypical class C sortase (named Cd-SrtA) catalyzes polymerization of the SpaA-type pilus, consisting of the shaft pilin SpaA, tip pilin SpaC and minor pilin SpaB. The pilus shaft is then attached to the cell wall by a housekeeping class E sortase, Cd-SrtF. In the absence of Cd-SrtF, Cd-SrtA attaches the pilus to the cell wall, albeit at a reduced rate. Cd-SrtA can recognize two distinct sorting signals (LPLTG in SpaA and SpaC, and LAFTG in SpaB) and it can employ lysine residues that originate from different proteins (either Lys190 within the pilin motif of SpaA or Lys139 in SpaB). However, Cd-SrtA cannot be able to polymerize the major pilin subunit SpaH, even though it contains LPLTG motif. In two-component pili of prototypical Bacillus cereus, the class C sortase (named Bc-SrtD) cleaves related sorting signals within a major pilin protein BcpA (LPVTG) and a minor tip pilin BcpB (IPNTG), and catalyzes a transpeptidation that joins the threonine residues in each signal to the side-chain of Lys162 in BcpA (located within a pilin motif). Unlike the SpaA pilus in C. diphtheriae, in B. cereus Bc-SrtD is unable to covalently attach the pilus to the cell wall without the help of the housekeeping sortase.	3.29969e-77
NZ_CP040505.1|WP_005962241.1|379763_380135_+|50S-ribosomal-protein-L22	gnl|CDD|234793	PRK00565, rplV, 50S ribosomal protein L22; Reviewed.	3.75846e-51
NZ_CP040505.1|WP_005962243.1|378599_379436_+|50S-ribosomal-protein-L2	gnl|CDD|236488	PRK09374, rplB, 50S ribosomal protein L2; Validated.	0
NZ_CP040505.1|WP_005962266.1|348562_349279_+|DNA-alkylation-repair-protein	gnl|CDD|132880	cd06561, AlkD_like, A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.	1.61557e-34
NZ_CP040505.1|WP_005962267.1|345531_348096_+|S8-family-peptidase	gnl|CDD|173793	cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	2.15677e-92

Protein sequences

>NZ_CP040505.1|WP_131247168.1|369452_372020_+|hypothetical-protein
MSQSRLLTRTTRRGPRYLWKRRVIASLSMLTLGVSGIAGAAWADPAGPQSDVEPVVGSSPFDSGDVPSADSSSASTTELDAEGEDAEPGDDTTATPEASSESSADSGAGDASAPDESAGDASGEESAIDPGAPRMAPAALRGTIPLQVQAQAANHHGINGTTGGDIRYGSAAAGTVSGKIPNPGGGAGSTAFVGPGKMVYSAHGRGQKCGNPSCTYYEGQEPGELNLKVKSAVGFAPREVGSVDVGKEFALGYFVHVNNPIVGSGGSGGQHYAATLNIKLTLSGVEKTLSFPWTIHETPNNGPHPNDILNFTSTVAPVSFESGNLNYTLTIHGFTQNTGASCPAELTGGTPLSEQFITVEGQKTYGCLWASIEQVRKVTIEKKIEKAPDMVGEMPTTEFGFTTTGELINLWGAGGKFSLKPKEAAPATEVNENGYNTGKELKITEDTLGANWSLKSLSCKDADGQGAPIGSISGGTLTLAKGLSEEDSAKVPIRCTYTNLYTPPATITLLKEVSSGTAAASNWTLSATHGTESVNGDSGASAKVTPNQEYTLSEKPKADFNEAGQYELEAWSCSADQGQLTFDANAKTVTPKPGQKVTCTAKNRLKSATLTLVKKINVPADAPNWAKKATEKDWNLKANGPTSIEGTSGDPGVTNQKIQPGNYALSETANPAGITGGLPATAYAESWECLDAAGARVDKNSTGAFPFAAGGTYTCTATNTLQTGGAKWKKTGEGQPLTGSEWTLTLNGVPGATVGASSATSEFEVQDLPVGTYTLHESKVPAGYLAHGDLEITITKGATNEEHYSTPIDNKKRPVPRLPLTGGLGEDWFVILAGGAGGIATLLAVAARRRKRSAS
>NZ_CP040505.1|WP_005962253.1|367868_369056_+|elongation-factor-Tu
MAKAKFERSKPHVNIGTIGHVDHGKTTLTAAITKVLHDKYPDLNEFRPFDQVDNAPEERERGITINVSHVEYQTEKRHYAHVDAPGHADYVKNMITGAAQMDGAILVVAATDGPMAQTREHVLLARQVGVPTILVALNKSDMVDDEEMLELVEEECRDLLESQDFDRDAPIIKVSALKALEGDEEWVEKIVELMDAVDEFIPTPERDMDKPFLMPIEDVFTITGRGTVVTGRVERGKLPINSEVEILGIRDPQKTTVTGIEMFHKSMDEAWAGENCGLLLRGTKRDEVERGQVVAVPGSITPHTNFTGQVYILKKEEGGRHNPFFSNYRPQFYFRTTDVTGVITLPEGTDMVMPGDTTEITVELIQPIAMEPGLGFAIREGGRTVGSGRVTAIEK
>NZ_CP040505.1|WP_005962254.1|365588_367712_+|elongation-factor-G
MALEVLTDLNKVRNIGIMAHIDAGKTTVTERILFYTGINYKLGETHDGASTTDWMEQEKERGITITSAAVTSFWNGNQINVIDTPGHVDFTVEVERSLRVLDGAVAVFDGKEGVEPQSETVWRQADKYEVPRICFINKMDKMGADFYFSVSTIKDRLHATPIVMQIPIGAENDFEGQVDLVTMESLRYPAKDEKGDPTFGSVIVRGPIPEELQERAEEYREAMMEAAAEGSDELTEAYLENGELTVEQIKEGIRLLTISGRAFPVYCGTALRNMGVQPVLDAVVDFLPSPLDIESVKGFKPNSDDEERTESRLPDEKEPFAALAFKVAAHPFYGKLTFVRVYSGKVESGSQVLNSTKGKKERIGKIFQMHSNKENPVDEAHAGHIYAVIGLKDTTTGDTLCAMDKPIVLESMTFPKPVIQVAVEPKSKADQEKMGVAIQKLAEEDPTFTVELDPETGQTIIGGMGELHLDIIVDRMRREFKVEANVGAPMVAYRETIRKTVEKYEYTHKKQTGGSGQFARVIIALEPLPADSEEEYEFEDKVTGGRVPREYIPSVSAGIQDAMQSGILAGYPMVDIKATLLDGAYHEVDSSEMAFKVAGSMALKEAAKKANPVLLEPIMAVEVRTPEEYMGDVIGDLNSRRGQISSMDEQHGVRVVKAQVPLSEMFGYVGDLRSKTQGRAVYSMEFDSYAEVPRAVAEEIIGKSRGN
>NZ_CP040505.1|WP_005962255.1|365024_365495_+|30S-ribosomal-protein-S7
MPRKGPAPKRPLVDDPVYGSKVVTQLVNRVLLDGKKTVAERIVYGALETVRERTEQEPVSVLKRALDNIRPALEVRSRRVGGATYQVPVEVRPARATTLALRWLVDFSRQRREKTMTERLANEILDASNGLGAAVKRREDMHKMAESNRAFAHYRW
>NZ_CP040505.1|WP_026460007.1|364650_365025_+|30S-ribosomal-protein-S12
MPTIQQLVRKGRSSKRSKVKTPALKGSPQRRGVCTRVYTTTPKKPNSALRKVARVRLSSGIEVTAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYRIVRGSLDTQGVRNRKQARSRYGAKKEKK
>NZ_CP040505.1|WP_005962260.1|360744_361869_-|DUF559-domain-containing-protein
MNTEFVNQVHKALIITTRKRRMPLGERDTVKIHRGVHLPSTFLHDLKTPWEQRRAISIARTLAVLHRRQHAQPVARSAALLCGYDIFDTNPSIHIHIPQVECKSTTDSALPAVTLDGVPILGEARCHVHLHEATLSAQDTEFSSRVLTPSPSSSALSPDRASPQALSPSAEEVIGLVIQWTLIDPGEEAFVFTCQALRMLTPSSTRRLSGWEQQEASIRRHLLRKLFTLPSGTRNLRRAEWIIRHASAGCESIGEARLLWILQSRGLAGIVPQFEVEDSFVHYFIDLAIPHLKIALEFDGRLKYGKDSEEQLNVLREQIQRQKQLEVRGWYVIRFSWADLFKPESIIQQIEEAACHFRGKLKYSAKYPVRGGVS
>NZ_CP040505.1|WP_040313754.1|354069_357969_+|DNA-directed-RNA-polymerase-subunit-beta'
MLDAKTFDSLKITLATSEDIATWSYGEVKKPETINYRTLKPERDGLFGEQIFGPTRDWECACGKYKRVRYKGIVCEKCGVEVTRSKVRRERMGHIDLAAPVTHIWYFKGVPSRLGYVLDLAPKDLEKVIYFAAYMVTEIDEKGRDEDLADLRQELEVQKKQMENQRDSAINDYAEKAEADLAALEADGASAAEREKLRKNVDKEMARIRKRFDGDIEGLEVVWENFKNLKVGALIGDERLYRAMLARYGTYFKGDMGAAAIQKRLETFDLQAELDKLRQTIASDSGPRKARAIKRLKVINAFIVTGNSPASMVLTKIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNTRLKRLLELGAPEIIVNNEKRMLQESVDALFDNGRRGRPVAGPGNRPLKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVEKNYAQNVKAAKRKVERQRPEVWDVLDDVIREHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLACGAFNADFDGDQMAVHLPLGAEAQAEARILMLSTNNILKPSDGRPVAMPSQDMIIGLFHLTSDPDPAVEVEKDAEGKEILPAFSSAAEAQMAFDNGNLDLNAKALIRFEGIVPPLDWQAPEGWEPGDDVLLETTLGRAIFNEQLPVDYPYVNGVVGKKHLGQIVNNLTQRYPNVLVAECLDALKSSGFHWSTWSGITIAFSDIQASPRKESILADYEARAAAIQDQYETGIITEDNRYEELVKLWLECTEKVAEDMRTNFDERNTVYRMVNSGARGNWSQVQQIAGMRGLVSDPKQKLIERPIKANYREGLTVLEYFIATHGARKGLADTALRTAESGYLTRRLVDVSQDVIVREADCATRQGVKITIARKNEAGEWEALETVDTTAYARNLARDAVNEAGEVIMTAGSDLGDDELAMLVKAGVEQVVCRSVLTCESAVGTCAACYGRSLATGKQVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGAASASDITQGLPRVQELFEARTPKAEAKMAEAAGRVHIDDEDASVRRIVVTRDDAKEDDVIEVSRRQKLLVVEDEHVEAGQQLTEGQLDPKEVVRIMGRTVAQKQLVDEVQKVYRDQGVGIHSKHIEVIVRQMLRRVTILEPGDTTFMPGELVDRMAYLAQNRKVAAEGGQPASGRQMLMGITKASLATDSWLSAASFQETTKVLTEAAMNGKSDALVGLKENVILGKLIPAGTGLSRYNRVSVEPTAEALANSNYSEMDFQDGTVSDDFLNALGSIDFGMTFQE
>NZ_CP040505.1|WP_040313755.1|350578_354055_+|DNA-directed-RNA-polymerase-subunit-beta
MAASSTANQPRNRISFAKLREPLQAPNLLGLQVESFDWLLGNDAWKARVEAAKAEGRTDVPDVSGLEEIFEEISPIEDLAQTMSLSFRDHRLERPNYSVEEAKTKDYTYSAPMYVTAEFMNYETGEIKGQTVFMGDFPLMTPRGTFIINGTERVVVSQLVRSPGVYFERVSDRSSDRDIFGAKIIPSRGAWLEFEIDKRDAVGVRIDRKRKQPVTHFLKAIGLTEAEIREKFADYPVLLETLEKDTVHTQEEALLDVYRKLRPGEPANVDSAQTLLNNFYFDDKRYDLAKVGRYKINKKLAVDADPKASTLSIEDVVATVKYLLALHKGEKTFAGFRNGEPIEVRVESDDIDHFGNRRIRAVGELIQAQVRNGLARMERTVRERMTTQERDSITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPIESPEGPNIGLIGSLATFARINPFGFIETPYRVVRNGKVTDEVEYLTADDENGHFIAQASSALNEDGTFTEEHVLCRVAGEDPTLIARDRVDYMDVSARQMVSVAAAFIPFLEHDDANRALMGANMQRQAVPLLTTEAPLVGTGMERRAAKDSGEMVIATNPGVVTEVSADLIIVSKDEGGTDTYRLEKFERSNPGNCTNQRVIVDEGDRVEAGMVLADGPATDNGEVALGKNLLVAYMSWEGLNYEDAIILSRRVVEEDVLTSIHIEEHEVDARETKLGEEEITRDIPNVSEETLADLDERGIIRIGAEVTAGDILVGKVTPKGETELTSEERLLRAIFGEKAREVRDTSLRVPHGQEGIVIGVREFNDEEDDLNPGVRQTVRVYVAQRRKITIGDKMAGRHGNKGVVSKILPVEDMPFLEDGTPVDIILNPLGVPGRMNVGQVLEYHLGWLAHQGWDASKAVEAGESWTRDLPAEGITTQPQTLVATPVFDGLEADELAGLLRNVNPNRDGERLTNEQGKARLFDGRSGEPFPYPIAVGYTYMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDTTGRVKVYEAIVKGEDIPEPGIPESFRVLIQEMRSLCLNVEALDAAGNAIDLRDQEEDFNAREDLGITLEARPNAASTIDAI
>NZ_CP040505.1|WP_005962266.1|348562_349279_+|DNA-alkylation-repair-protein
MTAELIRRRLLALADEGNARFAASLIPGLEPTRILGCRNPALRALAKELRKTEPEAVEAFLAELPHELHDEDMLHAFLLGLETKPDLAFAKTRRFLPHVKNWAVCDALSPKGFTKDLGRLEAEAKRWLASEHTYTRRFGICMHMTHFLGEAFRPEFLALIGSLDSEEYYVHMAQGWYFATALAKQPEATLPWLVEDRLPTLVRRKAIQKSIESFRVPDETKTVLRRVRESLPRRGAGS
>NZ_CP040505.1|WP_005962267.1|345531_348096_+|S8-family-peptidase
MFERDRPHIFVTTPPASESFTPISTPVTSRGGGFRGSRKKHGERLKAEFEAAWESPADEPETTGTYITFASFPGLNLMFDSLELRRPGAQPELVAVQTEMTPAGEVVVNATVFIPDGQKEFFLKKLEKYVKTAEVAERKPEHAALIEGIASIRRATIRELWTDPADEYPTDPNQSRWWELWLRAVDGREYERLTGYARQHSLPVSAHYLGFGDRTVVLIRATIEQLAMTFRSLDDIAELRRPHEVASFLPSLSAFEQSEWVSELQSRVEHAGAHAPVVCILDRGVQAGHPLLEDSLSDDDRHAVEPSWNKNVVIHEHGTEMAGLALYRDLQAAISTQHSVRLKHRLESVKLLPDTGSNDPDVYGAVTARAVDQPEISAPDRARVFMLAITAPAAVPNPGYAVTNHPMKERGRPTAWSATIDALAYGRAIDDIAPRFTYLNRDQEPTPRLFVVSAGNIRDVRPEDNHLDRSDAEGVEDPAQAWNALVVGAYAEHDAMDHAPDVFAGYVPIAVRGELSPTSRTSVSFDQKRWPFKPDVVAPGGNLARTPDCTDVDTPENLAILTTRLQYPGKGSFTTTRDTSAATAHVAAVAADIRAAYPHLRPETIRALIVHSAEWTDVMKAHIDAATTKGAAVNLLRRYGMGVPSLERATRSASNALTLVDQAVIHPYERKGNSSSGKSREMNLHRLPWPTETLSELGETEVQLRVTLSYFVEPNPSSRGWTGRYVYPSHGLRFAMKRPEDNLDAFRQRVNKQAREEGEKPMSLNTENGWLFGSDQQKSSGSLHTDIWKGAAADLAAKGVVAVYPVAGWWKNRPKMDQSDKGVNYSLVVSIEAPEIEVDLWTPVYQQVATVIEV
>NZ_CP040505.1|WP_005962251.1|372949_373924_+|class-C-sortase
MQASGDSTKAVENSTQHTSEVGEKRVRKAQMRPRPRMVWRFHVLPMLAALLALVGIAIASYPPMAQWFSQYKQSKVVNSYSTAVATGLDPSSEEQFTEAREYNEALSVGALLEANANVPRGVGNEDQGGFDYDSLLNVGDTGLMGRIKIPAINADLPIYHGTSDETLLKGIGHLKGTSLPVGGIGTRAVLTGHRGLADAELFTKLNKVVVGDEITLEILDQALSYRVTEIKVVEPEDTEELQAVPGRDLVTLVTCTPLGINTQRILVTGERVLPTPPETIEDLGAQAKNPGFPWWAIIQAAGFLLAAAYIWRSGRQPEEGPPAA
>NZ_CP040505.1|WP_083879444.1|374087_375638_+|SpaH/EbpB-family-LPXTG-anchored-major-pilin
MLATVSILFWPLSGQCLRHMVAGDPPSSRREFISMSTTTRERRIVAVLASLVLSLFTLFGLSSAAMATTGNPMGDITNTPGTINVYKHANPGGTLEYGNGNEVSAGGEALGGVPFTLYKVEGVDLVNGNAGWDVVGKITDPAKPVEPALDNQNSPTKVTIDGKKYTLKKIDEKTTADGTGLAQFTDVYPGLYIVVESKASLPPGSVIVAKAAPFFITLPIKDAKGAWSYTANVYPKNTVSPKPEKSAEVKNAADGVITWTVKQTLPTFDDTNKLTKFRFEDDLSGAGDTKGTLASVKVTVNGKDKTGDFNKELAGLDGKHLVITAKNSGDLPSGGEIVATYTTKASGNGQFRNGVLSFINDVEVGHALAFADLGKITVEKLDATDKTLYLSGAEFKVCVDEDGVEETKDCPAVGTITTEKSLGTGSLDKLKIQKYVLFETAAPAGYTFNPDTPYKADLTTATYNTVTLTIENTKTNVPTLPLTGADGQLLMTIGGVALVLLAGGVFLVARKKRSEK
>NZ_CP040505.1|WP_003790631.1|376639_376948_+|30S-ribosomal-protein-S10
MAGQKIRIRLKSYDHEVIDSSARKIVDTVQRAGATVVGPVPLPTEKNVFVVIRSPHKYKDSREHFEMRTHKRLIDIIDPTPKAVDSLMRLDLPADVNIEIKL
>NZ_CP040505.1|WP_005962246.1|376959_377628_+|50S-ribosomal-protein-L3
MTTDNKQHAAAPVQALLGRKLGMTQVWDADGRLVPLTVVQVGTNVVTQVRTEEVDGYSAVQLGFGEIPARKVTKPMAGHFAKAGVEPRRHLAEVRTSAADNYELGQELQATVFEAGQAVDVSGNTKGKGFAGVMKRHGFAGVSASHGAHRNHRKPGSIGACATPGRIFKGLRMAGRMGNVRRTVQNLKIQAVDAEKGLLLISGAIPGPKNGVVLVRSSVKGA
>NZ_CP040505.1|WP_005962245.1|377629_378274_+|50S-ribosomal-protein-L4
MSEVQTLDVLDLQGKKAASVELPAEIFDVPTNIPLMHQVVVAQLAAARQGTHATKTRGMVSGGGKKPFRQKGTGNARQGSIRAPHFTGGGIVHGPQPRDYDQRTPKKMKQGALRSALSDRARNGRIHVVTALIEGETPKTKIALAALRAIVEDRQALVVLERNDEITALSLRNVPEVHVLWVDQLNTYDVLDADDIVFTQAALESFLGTKEETK
>NZ_CP040505.1|WP_005962244.1|378270_378576_+|50S-ribosomal-protein-L23
MSTLEAGKNPRDIILKPVVTEKSSILMDEGKYTFEVDPRANKTEIKIAIEAIFGVKVGQVATQNRKGKTYRTRTGQGKRKDVKRAIVTLREGAIDIFGDQA
>NZ_CP040505.1|WP_005962243.1|378599_379436_+|50S-ribosomal-protein-L2
MGIRKYKPTTPGRRGASVSDFVEITRSEPEKSLLRPLHKTGGRNSNGRVTARHRGGGHKRQYRVIDFRRHDKDGVPAVVAHIEYDPNRTARIALLHYADGEKRYILAPAKLSQGDRIEAGVGADIKPGNNLPLRNIPLGTVVHAVELKPGGGAKIARSAGSSVQLVAKEGRFAQLRMPSGEIRNVEITCRATVGEVGNAEQSNINWGKAGRMRWKGKRPHVRGVVMNPVDHPHGGGEGRTSGGRHPVSPWGKPEGRTRRPNKDSDRLIVRRRKTGKNR
>NZ_CP040505.1|WP_005962242.1|379452_379734_+|30S-ribosomal-protein-S19
MPRSLKKGPFVDDHLLKKVDAANESGSKNVIKTWSRRSVITPDFLGLTFAVHDGRKHVPVFVTESMVGHKLGEFAPTRTFRSHDKDDRKGRRR
>NZ_CP040505.1|WP_005962241.1|379763_380135_+|50S-ribosomal-protein-L22
MEAKAQARYVRVTPQKARRVVNEVRGKAALEAADILRFAPQAVAVDVRKVLLSAVANAKVKAEQVGETFNEAELEILEAYVDEGPTMKRFRPRAQGRAGRILKRTSHITIVVGTKEDKKKGDR
>NZ_CP040505.1|WP_005962240.1|380136_380934_+|30S-ribosomal-protein-S3
MGQKVNPTGFRLGITTDHRSRWFSDSTTKGQRYADYVAEDVAIRKNLTENLERAGISKVDIERTRDRVRVDLHTARPGIVIGRRGAEADRLRQDLEKLTGKQVQLNILEVKNPDMDAQLVAQGIAEQLAARVSFRRAMRKGIQSAQRAGAKGIRVQVSGRLGGAEMSRSEFYREGRVPLHTLRANIDFGFHEARTTFGRIGVKVWIYKGDITEREFARQQAEQANRGGRRGDRRGPRRGGRQNQETAQQQAPAAAPAATENGSEA

Crispr_ID: NZ_CP040505_16

• CRISPR_ID: NZ_CP040505_16
• CRISPR_location: 399935-400020
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP040505_16

Consensus_repeat	Method
TCGTTATCCCCTCCATTTGTGAA	CRISPRCasFinder

spacers of NZ_CP040505_16

>16.1|399958|40|NZ_CP040505|CRISPRCasFinder
AAGGGATGCGGCCTGGAGGACCTTGGAGGCGCGCTCGACC

CRISPR arrays and Neighbor proteins around NZ_CP040505_16

CRISPR arrays

The CRISPR arrays of NZ_CP040505_16

>merge|NZ_CP040505|16|399935-400020|CRISPRCasFinder
TCGTTATCCCCTCCATTTGTGAAAAGGGATGCGGCCTGGAGGACCTTGGAGGCGCGCTCGACCTCGTTATCCCCTCCACTTGTGAA

>NZ_CP040505|16|15|399935-400020|CRISPRCasFinder
TCGTTATCCCCTCCATTTGTGAA	AAGGGATGCGGCCTGGAGGACCTTGGAGGCGCGCTCGACC
TCGTTATCCCCTCCACTTGTGAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005962205.1|403238_403736_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962198.1|411166_411946_+|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl|CDD|224268
NZ_CP040505.1|WP_005962203.1|406006_406900_+|DMT-superfamily-glucose-uptake-transporter	unknown	unknown	gnl|CDD|227309
NZ_CP040505.1|WP_005962200.1|410098_410620_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962208.1|398341_399703_+|phosphoglucosamine-mutase	unknown	unknown	gnl|CDD|237672
NZ_CP040505.1|WP_040313531.1|397208_397652_+|50S-ribosomal-protein-L13	unknown	unknown	gnl|CDD|181703
NZ_CP040505.1|WP_005962216.1|393312_394311_+|DNA-directed-RNA-polymerase-subunit-alpha	unknown	unknown	gnl|CDD|235359
NZ_CP040505.1|WP_005962210.1|397696_398188_+|30S-ribosomal-protein-S9	unknown	unknown	gnl|CDD|178888
NZ_CP040505.1|WP_003790577.1|392046_392160_+|50S-ribosomal-protein-L36	unknown	unknown	gnl|CDD|179039
NZ_CP040505.1|WP_005962201.1|408610_409846_+|alanine-racemase	unknown	unknown	gnl|CDD|143481
NZ_CP040505.1|WP_040313748.1|400058_401012_-|type-I-pantothenate-kinase	unknown	unknown	gnl|CDD|235466
NZ_CP040505.1|WP_005962218.1|392750_393161_+|30S-ribosomal-protein-S11	unknown	unknown	gnl|CDD|180007
NZ_CP040505.1|WP_005962212.1|396018_396951_+|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl|CDD|234577
NZ_CP040505.1|WP_005962206.1|401046_403203_-|VWA-domain-containing-protein	unknown	unknown	gnl|CDD|238861
NZ_CP040505.1|WP_005962219.1|392307_392682_+|30S-ribosomal-protein-S13	unknown	unknown	gnl|CDD|235358
NZ_CP040505.1|WP_005962215.1|394357_394849_+|50S-ribosomal-protein-L17	unknown	unknown	gnl|CDD|235522
NZ_CP040505.1|WP_005962202.1|407003_408602_+|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase	unknown	unknown	gnl|CDD|238576
NZ_CP040505.1|WP_005962199.1|410600_411161_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962213.1|395281_396031_+|ROK-family-protein	unknown	unknown	gnl|CDD|224851
NZ_CP040505.1|WP_005962204.1|403913_405827_+|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl|CDD|234729

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005962198.1|411166_411946_+|DeoR/GlpR-transcriptional-regulator	gnl|CDD|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	1.33291e-67
NZ_CP040505.1|WP_005962203.1|406006_406900_+|DMT-superfamily-glucose-uptake-transporter	gnl|CDD|227309	COG4975, GlcU, Putative glucose uptake permease [Carbohydrate transport and metabolism].	1.0735e-64
NZ_CP040505.1|WP_005962208.1|398341_399703_+|phosphoglucosamine-mutase	gnl|CDD|237672	PRK14318, glmM, phosphoglucosamine mutase; Provisional.	0
NZ_CP040505.1|WP_040313531.1|397208_397652_+|50S-ribosomal-protein-L13	gnl|CDD|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	2.24159e-99
NZ_CP040505.1|WP_005962216.1|393312_394311_+|DNA-directed-RNA-polymerase-subunit-alpha	gnl|CDD|235359	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional.	1.39163e-167
NZ_CP040505.1|WP_005962210.1|397696_398188_+|30S-ribosomal-protein-S9	gnl|CDD|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	6.99368e-76
NZ_CP040505.1|WP_003790577.1|392046_392160_+|50S-ribosomal-protein-L36	gnl|CDD|179039	PRK00465, rpmJ, 50S ribosomal protein L36; Reviewed.	4.19395e-13
NZ_CP040505.1|WP_005962201.1|408610_409846_+|alanine-racemase	gnl|CDD|143481	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. AR and other members of this family require dimer formation and the presence of the PLP cofactor for catalytic activity. Fungal ARs and eukaryotic serine racemases, which are fold types I and II PLP-dependent enzymes respectively, are excluded from this family.	5.1915e-137
NZ_CP040505.1|WP_040313748.1|400058_401012_-|type-I-pantothenate-kinase	gnl|CDD|235466	PRK05439, PRK05439, pantothenate kinase; Provisional.	0
NZ_CP040505.1|WP_005962218.1|392750_393161_+|30S-ribosomal-protein-S11	gnl|CDD|180007	PRK05309, PRK05309, 30S ribosomal protein S11; Validated.	8.08757e-79
NZ_CP040505.1|WP_005962212.1|396018_396951_+|tRNA-pseudouridine(38-40)-synthase-TruA	gnl|CDD|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	1.29374e-96
NZ_CP040505.1|WP_005962206.1|401046_403203_-|VWA-domain-containing-protein	gnl|CDD|238861	cd01823, SEST_like, SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.	5.09192e-25
NZ_CP040505.1|WP_005962219.1|392307_392682_+|30S-ribosomal-protein-S13	gnl|CDD|235358	PRK05179, rpsM, 30S ribosomal protein S13; Validated.	9.21371e-79
NZ_CP040505.1|WP_005962215.1|394357_394849_+|50S-ribosomal-protein-L17	gnl|CDD|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	6.83849e-49
NZ_CP040505.1|WP_005962202.1|407003_408602_+|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase	gnl|CDD|238576	cd01171, YXKO-related, B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.	6.49607e-49
NZ_CP040505.1|WP_005962213.1|395281_396031_+|ROK-family-protein	gnl|CDD|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	4.74189e-11
NZ_CP040505.1|WP_005962204.1|403913_405827_+|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl|CDD|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0

Protein sequences

>NZ_CP040505.1|WP_005962208.1|398341_399703_+|phosphoglucosamine-mutase
MTRMFGTDGVRGLANELLTPELAVQLGQAAARVLTKDIPASQLSRTGRPRAVVGRDTRASGEFLDHAISAGLASSGVDVTRVGVLPTPAIAHLTATQNIDLGVVISASHNPFQDNGIKFFGRGGYKLDDALEDQIEALLGKVEQLPTGAAVGRVIKGETVADQNYINHLVDSVGTDLSGLRIVVDASNGAASHVGPAALRAAGAEVIVINASPDGLNINAYCGSTHPEQLQKYVVAVHADMGVAYDGDADRCLAVDAEGKLVDGDQIMGLLAVGMKADGTLGSDTLVVTVMSNLGLLLAMKEHGIRIVQTGVGDRYVLERMLQGGYTLGGEQSGHVIDTIHATTGDGVLTSLRIAARMKRTGKSLAELASIVQRLPQTLVNVKGVDKACAGTNAAVQKAVEEAEAELGKSGRVLLRPSGTEPLVRVMVEAATQEQADEVAGRLAEVVKDNLAL
>NZ_CP040505.1|WP_005962210.1|397696_398188_+|30S-ribosomal-protein-S9
MAETTELVELDEENVPSSYTTETESAPVGAGQSITAPGAGLGRRKEAVARVRLVPGTGEWKINGRTLEDYFPNKLHQQLVKSPFVLLDIDGRFDVIARINGGGVSGQAGALRLGISRALNEIDREANRPALKKAGFLTRDARAIERKKAGLKKARKAPQYSKR
>NZ_CP040505.1|WP_040313531.1|397208_397652_+|50S-ribosomal-protein-L13
MRTYSPKPGDADKKWYVIDATDVVLGRLAAKVADILRGKHKPTFAPHMDMGDNVIIINADKVVLTGKKLEQKMAYRHSGRPGGLTAVSYRDLMANSPERAVEKAVRGMLPHTSLGRAQFKKLHVYAGAEHPHAGQSPVPYEITQVAQ
>NZ_CP040505.1|WP_005962212.1|396018_396951_+|tRNA-pseudouridine(38-40)-synthase-TruA
MGTVNLPEKAETIRVRVDLAYDGTDFHGWAAQPGLRTVQGEIETALALVARMPLVLTVAGRTDAGVHARRQVAHVDIPLDAWQAFAPRGADREDDAAIGTALTRRLNALIAQAHGEWGRRHGLLIPRGSSDIVISRISRVSADFDARFSALGRSYCYRICEGAPDPLRRRDVLSVSGPLNLEAMNRGAAALLGEHDFLSYCRPREGATTIRTLRRLEFTRLGGIIECRVEADAFCHSMVRSLVGAHLPIGQGKKPESWSAQLLEKCSREGAAPIAPAHGLTLEDVHYPEEEQWASRAKTARRRRDCCQED
>NZ_CP040505.1|WP_005962213.1|395281_396031_+|ROK-family-protein
MSEEMTLAIDCGGGGIKASVLDSHGTMIAPPLRTPTPYPLPPALLVQTAVDLAARLPHADRVTMGMPGMIRHGVVVATPHYITRSGPRSKILPELVEEWRFFDMGRALGRALDLPTKVLNDAEVAGAGVVTGTGLEMIITLGTGLGNAVFDGGVLAPHIEVSQGFVRWGLTYDDYIGEHERLRLGDTHWSRRVRRIVDGLRPMYMWDRLYLGGGNSKRITAGHRAKLGEDVIIVPNDAGIIGGVRAWEL
>NZ_CP040505.1|WP_005962215.1|394357_394849_+|50S-ribosomal-protein-L17
MPTPKKGARLGGSPAHQKLILANLATQLIEHRALTTTEAKAKVLQPYFEKLVTKAKRGDLHARRTVAKKITSKEAVYMLFDEIVPELDPERNGGYTRLIRVGNRKGDNAPLVRIEIVLEKVEKKAVVKAAEATVAKAAEKAEEPAKDEAAKVESTEAEAPEAE
>NZ_CP040505.1|WP_005962216.1|393312_394311_+|DNA-directed-RNA-polymerase-subunit-alpha
MLIAERPILTEDKVSEFRSRFTLEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDGVAHEFRTIEGVKEDVAEIILNIKQIVLSSENDEPVVMYLRKAGPGAVTAGDITPPAGVEIHNPELTLATLNEKGKLEIELTVERGRGYVSAAQNKDPQAEISRIPIDSIYSPVVKVTYKVEATRVEQRTDFDRLVIDVETKPAITPRDALASAGKTLVELFGLMRELNEEAEGIEVGPSTTDATLAADLALPIESLNLQSRSYNALRRRGILTVGELVAHSEADLLDIRNFGTKSIEEIKEALAGLGMTLKDSVMPNFGDSDSGSIQFSDEQSI
>NZ_CP040505.1|WP_005962218.1|392750_393161_+|30S-ribosomal-protein-S11
MAAAKTSRSGASRKPRRKISKNVTHGHAYIKSTFNNTIVSLTDTTGAVIAWASSGQVGFKGSRKSTPFAAQLAAEAAARRAQEHGMKKVDVFVKGPGSGRETAIRSLQAAGLEVGSIQDVTPQAHNGARPPKRRRV
>NZ_CP040505.1|WP_005962219.1|392307_392682_+|30S-ribosomal-protein-S13
MARIAGVDLPREKRLEIALTYIYGVGRTRAAETLAATGISPDLRVKDATEEDLVKLREYIDNNFKVEGDLRREVQADIRRKIEIGSYQGLRHRRGLPVHGQRTKTNARTRKGPKRTVAGKKKAK
>NZ_CP040505.1|WP_003790577.1|392046_392160_+|50S-ribosomal-protein-L36
MKVKPSVKKICDKCKVIRRHGNVMVICDNPRHKQRQG
>NZ_CP040505.1|WP_040313748.1|400058_401012_-|type-I-pantothenate-kinase
MTCTDTHEFSPFVRFEREEWDRLVERTPLPLTQEDITRIASLGDPIDMSEVDAIYRPLTALLQLYVDGRRRTAKERRAFLGETGEIHTPFVIGIAGSVAVGKSTVARLLQLLLQRWAHTPRVDLVTTDGFLYPNKILDKKGILARKGFPESYDRAALIDFLAAVKSGAPELEVPVYSHVVYDIVEGEKLRIQQPDILIVEGLNVLQPPRVVPGYVSVAVSDYFDFSIYVDASEENIEQWYVDRFLELRKTAFSKADSFFKTYANLSNEEAEATARMIWAAINLPNLRENISATRERATMVFRKDSSHRVESLLLRRD
>NZ_CP040505.1|WP_005962206.1|401046_403203_-|VWA-domain-containing-protein
MRLRSLIAASGILGLAIGMLATPPALGDEVNLRLNAVVIGDSYSAGNGAGAYEPGTEKTSYRSTRNWARVYTSWLNEHGIHTTLTNLAASGSVTANVLNEQIPQISKETDLVMLTIGGNDLEFSRIVSDCFAAGIRSRGACVEALDNAEAGLDAAIGNTRRIFDKVNEKIGDDGHMILLAYPLLATTRQYALASCEEWWLVFGTPTCVRWESTEIGSRVRELGNLATHKQKELVDSWNASHAMKVSYIDSVPSAFAGHEPDPSALHRNPARWINEFFETEGIESGGSTTSSWTIDRNHFYHPNITGHQMMAREIQENIGVSFSAEPINPGSGDIDVVFVVDATGSMTDDIDAVRSNVSGILTKLASVTDSYRVALVTYKDFSDSGGDPGDYPSQVNLDFTTDADALRSALGNLEVTGGGDWPETVYSGVTSALNLSWRSGVRKIAIVLGDAPAKEPEPHTGHDAHSVAVHALEVDPVEVYAIDTGSLTSSFSNVQDLVDETGGSTFLLDSSSDIPTLITEAMTTALSKPFGWLQGPIIGEVGETLEFDARGSYAIGSVLTSYEWDFDSDGVIDETTTSGLVEHAFAAPFTGTASVTVTDALGAMSRGSAPISVTIPPEPEPEPEIPEDKPGVLELLDGEPLPTPGDGSQSGVPSGPQSGEPTPTPDETVTTPPQAPTPTKTGTIARTGATSDSVGTLALAFAALGALAIGFVRVNRRR
>NZ_CP040505.1|WP_005962205.1|403238_403736_-|hypothetical-protein
MVTRQLFNADSHRPLIIAGALIVVLILTVFGGYRYGAQSGWWGQSTRLKALAEDPIVGELVADHARLSFEIPEAAGPLAKSKPEVVSACYSIEGSSAPQVHDDLVRAAQALGFQIDQAASDSQITVLKRQGGSAEQKTTLVIDEHPLDAPGGITEPCVSVRIFHS
>NZ_CP040505.1|WP_005962204.1|403913_405827_+|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGHIASQASQRSREVVMGGLARLEYRGYDSAGIALETSGSVEVVRAVGKLSNLADALEAADPAPAIAAIGHTRWATHGRPTVQNAHPHSTPDHRFSLVHNGIIENADSLRAKLASQGAHFSSDTDTEVVVHLLQRAFDSEDLEPWEGPAEGLEGEELQAARRLVVAMRRVTEDLEGTFTLLALCADAPGAIVAARRSSPLVVGLGQDENFLGSDVLAFVEHTSRALEIDQDQQVLVTAKGVTIIGHDASVMPHKEFEIDFASDRATKGGWATFMEKEIHEQPRGVADTLADRLDSHGHLALDEVRIPEHVLRGVDKIVMIGCGTASYAGQVARYAIEHWCRIPVEVELSSEFRYRDPVVTEKTLVVAISQSGETMDTIQAIRHAREQGAKVVAIVNTPGSTISRESDAVLLTHAGPEIAVASTKAFTSQVTACYILGLYLAQVRGNKYAEEIADYMDKLFEAPAKIQEVLDRGEAVREFARAMADTTSVIYLGRHVGFPVALEGALKLKEICYIHAEGFAAGELKHGPIALVDEGQPVIIIVPTPRRPELHNKVLANIQEVRARGARTIVIAEEGDTSVDAFAEVVFRVPPIPTLYAPLLAVVPLQIFACELAIAKGLDVDQPRNLAKSVTVE
>NZ_CP040505.1|WP_005962203.1|406006_406900_+|DMT-superfamily-glucose-uptake-transporter
MADFLLALSPSLILGTMSVLLVVLGGDDRQRILGLMTGGFLTSLIATPFLGVTWTPQSFAIAYASGLLLGWGLFDQTVCLRVLGVSRTMPTSTGLQLVSMSLGGVLLFGEWRQGASSLFGAGAIVALALGVWLASRHEKSESADGLDWPRGIRLLATSTIGLVAYLLLVQWFGIDGRTALLPQALGYMTVALILTAPRFTPWDGPADTRRSARTLRQVIPGMMWGCAVLILQVSADRVGVATGFTLSQLGILISTPAGILLLGESRTRKEMRWTILGVALVICGAVLAGFAKSLDPA
>NZ_CP040505.1|WP_005962202.1|407003_408602_+|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase
MIPAFIRAEVREAEARRVRAAHAEGDPDRLMRSASRAVADEVRDLLAGNPPASPDGEAGPRVCALVGGGDNGGDALYAASFLAEQGVPCAAVCLSPRVHERARAAAEEQGVVCLPAHLPAGDEPLGSSRELAEALDAPIWIDGICGTGLVGGLREPLASRLCELEGIRSERGARVVAIDVPSGQLGDDGEVEGPLLKAERTVTMGAMKSVLALPPASRAAGRVRVHGLGLDMGRSRVILMEEADVPGLIRVPGPDDHKYTRGVVGLVAGSQTYPGAGVLAVLGAQGAGPGMVRLDAPTRVADLALAAAPGVVTRGGRIQAGLVGPGMDEDTRQAARELAGFAASSGLPLIIDAGGLELVPDLRDEGIGEFTVLTPHAGEAAALLGALGRAAPRWRVEEHPAEAARALAQASGARVLLKGATTLLATPDSRVLVAPRGSAWTGVAGAGDVLAGFLAGLAAGWKADRERGLPGRDFDALIAAGAMIHALAGADAARAHGPLGGPIGALDIARALPSVLARLLAESAGRADPVRY
>NZ_CP040505.1|WP_005962201.1|408610_409846_+|alanine-racemase
MLQTSQDPLFPGRVIVDLGAIAENLEVLRSFAPGVAQMAVVKADAYGHGLLPVAMAALQAGATWLGVAQLAEARALREGLDAAGIDRSAAPILAWVAPSGADWAGALEAGIDLSVSWTWVLAEICAAARVTGIRARIHVKIDTGMSRAGSTRADLPALVAAVRMAEEDGLIEVVGAWSHLSRGDDLSEDGRASTAAQVEVFEQGLRSFADAGIKPRIRHLSATSGILWHPEAHYDMVRAGIGMYGLSPDPLTARGAALGLRPAMTLRAPLTSVKVVEDGAPASYGGTWRAPGRRWLGLVPLGYADGILRAGSNGAPVLVEGRKAITTRVVGRICMDQFIVDLGAAEGEPGAPSARSGRAPARVGDTATLFGDPDRGAPSADEWAQAAGTINYEIVTRLGERVPRVHLSAAE
>NZ_CP040505.1|WP_005962200.1|410098_410620_+|hypothetical-protein
MNDILPFTDTKEKGAADFYFCINATFAHIQRTFAEEGLHRYWEDLGRDWMSPVWMRWREGGLDAVAEYMRRSFEVEPGADVIVERHPESVEVEVRTCPALAHLRASGRAPIETYCHHCYVVMNAAARCAGLAVRLEGGNGSCRQWFGVAAGAADQDLMEIRPCVMEADDAGNL
>NZ_CP040505.1|WP_005962199.1|410600_411161_+|hypothetical-protein
MMLGTYDFCGHYAWTFAWLKERLGDEGLEEYWLEAVSKDSQRHAREAFADGFDGMERYWGRTLASEGAGWTSGRHVVDGEEVMRIDMYACPSKGFLLRNGLGFGIDYCSHCAAWIEPALEEAGFSADHEHDHLGHCWWEIRALESEREASLPADLSGDEDVRLGDAWSEGTVHRVERVRSTGRRKG
>NZ_CP040505.1|WP_005962198.1|411166_411946_+|DeoR/GlpR-transcriptional-regulator
MGKQGLVGAERRKTILRMVQESGSASVAQLCATLGVSAATIHRDLAALAKEGVVERVHGGILAPAGGADDPHVLGEKAHRRGEKAEIARTALSFVSPEVHSVFLEASTTVAQLGLLLRERRGLVFLTNSPEIALELVAEGLEVTLVGGQLRARTLATVGPDANRQIGLSRVDVAFIGVSAIDVDGLSSMNAIEAETKTAIIAASRAVIALGDHSKLGKRGLAHVARADAINALVTDARADDAAVEALRSCGLEVIIAEG

Crispr_ID: NZ_CP040505_17

• CRISPR_ID: NZ_CP040505_17
• CRISPR_location: 431602-431685
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers
• Cas_protein_info: DEDDh

Consensus repeat of NZ_CP040505_17

Consensus_repeat	Method
TCCCGGGGCGTGGGGACGTGGCT	CRISPRCasFinder

spacers of NZ_CP040505_17

>17.1|431625|38|NZ_CP040505|CRISPRCasFinder
TGCACTCAAACGCCAACTCGACGACCTCCTCCCGAAGT

CRISPR arrays and Neighbor proteins around NZ_CP040505_17

CRISPR arrays

The CRISPR arrays of NZ_CP040505_17

>merge|NZ_CP040505|17|431602-431685|CRISPRCasFinder
TCCCGGGGCGTGGGGACGTGGCTTGCACTCAAACGCCAACTCGACGACCTCCTCCCGAAGTCTCCGGGGCGTGGGGACGTGGCT

>NZ_CP040505|17|16|431602-431685|CRISPRCasFinder
TCCCGGGGCGTGGGGACGTGGCT	TGCACTCAAACGCCAACTCGACGACCTCCTCCCGAAGT
CTCCGGGGCGTGGGGACGTGGCT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_131247271.1|434157_434934_-|cytochrome-c-biogenesis-protein-CcdA	unknown	unknown	gnl|CDD|223856
NZ_CP040505.1|WP_005962187.1|422303_422807_+|YjbQ-family-protein	unknown	unknown	gnl|CDD|376651
NZ_CP040505.1|WP_005962181.1|427138_429118_+|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl|CDD|236054
NZ_CP040505.1|WP_131247162.1|437817_439101_+|N-acylglucosamine-2-epimerase	unknown	unknown	gnl|CDD|369267
NZ_CP040505.1|WP_005962174.1|434999_435818_-|thioredoxin-domain-containing-protein	unknown	unknown	gnl|CDD|239321
NZ_CP040505.1|WP_040313527.1|426420_427122_+|succinate-dehydrogenase-cytochrome-b-subunit	unknown	unknown	gnl|CDD|239578
NZ_CP040505.1|WP_051057835.1|430161_430425_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962170.1|439240_440764_+|IMP-dehydrogenase	unknown	unknown	gnl|CDD|376340
NZ_CP040505.1|WP_040313528.1|424967_425663_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl|CDD|274750
NZ_CP040505.1|WP_040313525.1|435920_436211_-|WhiB-family-transcriptional-regulator	unknown	unknown	gnl|CDD|376791
NZ_CP040505.1|WP_005962183.1|425659_426184_+|ribosomal-protein-S18-alanine-N-acetyltransferase	unknown	unknown	gnl|CDD|273701
NZ_CP040505.1|WP_005962178.1|430453_431506_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl|CDD|236585
NZ_CP040505.1|WP_005962169.1|440985_441675_+|transaldolase	unknown	unknown	gnl|CDD|188643
NZ_CP040505.1|WP_040313524.1|441679_442408_-|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl|CDD|181176
NZ_CP040505.1|WP_005962180.1|429114_429858_+|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit	unknown	unknown	gnl|CDD|181038
NZ_CP040505.1|WP_005962185.1|424333_424957_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl|CDD|376771
NZ_CP040505.1|WP_005962176.1|433636_433933_+|co-chaperone-GroES	unknown	unknown	gnl|CDD|178988
NZ_CP040505.1|WP_005962172.1|436562_437486_+|MerR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|133379
NZ_CP040505.1|WP_083879443.1|422779_424219_+|FGGY-family-carbohydrate-kinase	unknown	unknown	gnl|CDD|212658
NZ_CP040505.1|WP_131247273.1|431882_433403_-|methyltransferase	unknown	unknown	gnl|CDD|380115

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP040505.1|WP_040313524.1|441679_442408_-|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	3.7e-32	106.4	0.1

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005962187.1|422303_422807_+|YjbQ-family-protein	gnl|CDD|376651	pfam01894, UPF0047, Uncharacterized protein family UPF0047. This family has no known function. The alignment contains a conserved aspartate and histidine that may be functionally important.	4.82952e-39
NZ_CP040505.1|WP_005962181.1|427138_429118_+|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit	gnl|CDD|236054	PRK07573, sdhA, fumarate reductase/succinate dehydrogenase flavoprotein subunit.	0
NZ_CP040505.1|WP_131247162.1|437817_439101_+|N-acylglucosamine-2-epimerase	gnl|CDD|369267	pfam07221, GlcNAc_2-epim, N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase). This family contains a number of eukaryotic and bacterial N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) enzymes (EC:5.3.1.8) approximately 500 residues long. This converts N-acyl-D-glucosamine to N-acyl-D-mannosamine.	4.86516e-84
NZ_CP040505.1|WP_005962174.1|434999_435818_-|thioredoxin-domain-containing-protein	gnl|CDD|239321	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.	3.96076e-27
NZ_CP040505.1|WP_040313527.1|426420_427122_+|succinate-dehydrogenase-cytochrome-b-subunit	gnl|CDD|239578	cd03498, SQR_TypeB_2_TM, Succinate:quinone oxidoreductase (SQR)-like Type B subfamily 2, transmembrane subunit; composed of proteins with similarity to the SQRs of Geobacter metallireducens and Corynebacterium glutamicum. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. C. glutamicum SQR reduces low potential quinones such as menaquinone. SQR is also called succinate dehydrogenase (Sdh) or Complex II and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type B as they contain one transmembrane subunit and two heme groups. The heme and quinone binding sites reside in the transmembrane subunit. The transmembrane subunit of members of this subfamily is also called Sdh cytochrome b558 subunit based on the Bacillus subtilis protein. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron acceptor (quinone). The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes. Proteins in this subfamily from G. metallireducens and G. sulfurreducens are bifunctional enzymes with SQR and QFR activities.	6.0506e-54
NZ_CP040505.1|WP_131247271.1|434157_434934_-|cytochrome-c-biogenesis-protein-CcdA	gnl|CDD|223856	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones].	4.43649e-18
NZ_CP040505.1|WP_005962170.1|439240_440764_+|IMP-dehydrogenase	gnl|CDD|376340	pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.	0
NZ_CP040505.1|WP_040313528.1|424967_425663_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl|CDD|274750	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ. This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification].	5.63698e-34
NZ_CP040505.1|WP_040313525.1|435920_436211_-|WhiB-family-transcriptional-regulator	gnl|CDD|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	3.04179e-26
NZ_CP040505.1|WP_005962183.1|425659_426184_+|ribosomal-protein-S18-alanine-N-acetyltransferase	gnl|CDD|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	3.27285e-41
NZ_CP040505.1|WP_005962178.1|430453_431506_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl|CDD|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	2.49475e-160
NZ_CP040505.1|WP_005962169.1|440985_441675_+|transaldolase	gnl|CDD|188643	cd00956, Transaldolase_FSA, Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea. Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.	1.46735e-74
NZ_CP040505.1|WP_040313524.1|441679_442408_-|DNA-polymerase-III-subunit-epsilon	gnl|CDD|181176	PRK07942, PRK07942, DNA polymerase III subunit epsilon; Provisional.	2.45696e-89
NZ_CP040505.1|WP_005962180.1|429114_429858_+|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit	gnl|CDD|181038	PRK07570, PRK07570, succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated.	0
NZ_CP040505.1|WP_005962185.1|424333_424957_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl|CDD|376771	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE. This family of proteins is involved in the synthesis of threonylcarbamoyl adenosine (t(6)A).	1.51294e-42
NZ_CP040505.1|WP_005962176.1|433636_433933_+|co-chaperone-GroES	gnl|CDD|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	3.63183e-49
NZ_CP040505.1|WP_005962172.1|436562_437486_+|MerR-family-transcriptional-regulator	gnl|CDD|133379	cd01104, HTH_MlrA-CarA, Helix-Turn-Helix DNA binding domain of the transcription regulators MlrA and CarA. Helix-turn-helix (HTH) transcription regulator MlrA (merR-like regulator A), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. Its close homolog, CarA from Myxococcus xanthus, is involved in activation of the carotenoid biosynthesis genes by light. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA- and CarA-like proteins in this group appear to lack the long dimerization helix seen in the N-terminal domains of typical MerR-like proteins.	1.75487e-18
NZ_CP040505.1|WP_083879443.1|422779_424219_+|FGGY-family-carbohydrate-kinase	gnl|CDD|212658	cd00366, FGGY, FGGY family of carbohydrate kinases. This family is predominantly composed of glycerol kinase (GK) and similar carbohydrate kinases including rhamnulokinase (RhuK), xylulokinase (XK), gluconokinase (GntK), ribulokinase (RBK), and fuculokinase (FK). These enzymes catalyze the transfer of a phosphate group, usually from ATP, to their carbohydrate substrates. The monomer of FGGY proteins contains two large domains, which are separated by a deep cleft that forms the active site. One domain is primarily involved in sugar substrate binding, and the other is mainly responsible for ATP binding. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Substrate-induced conformational changes and a divalent cation may be required for the catalytic activity.	1.89045e-97
NZ_CP040505.1|WP_131247273.1|431882_433403_-|methyltransferase	gnl|CDD|380115	pfam18096, Thump_like, THUMP domain-like. This is a domain of unknown function found in bacteria.	4.5783e-20

Protein sequences

>NZ_CP040505.1|WP_005962178.1|430453_431506_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MSEALVLGIESTCDETGVGIVRGCELLVDRTATSMDQYARYGGIIPEIASRAHLESFLPTLDSALEEAGVTLKEIDAIGVAAGPGLVGSLTVGICAAKALASALGKPLYGVNHIIGHLAVDKLADGPLPQRFVGLVVSGGHSNILLVEDIATDVKELGGTLDDAAGEAFDKVGRLLELPYPGGPHVDRLSQLGNVDAIRFPRGLASGKDKERHKYDFSFSGLKTAVARYIEGAQARGEEFSPEDVCAGFSEAVNDSLTSKAVRAALDTGCSSIVVGGGFSANSRLRSLLSARAEAAGIEVRMPPLRFCTDNGAQIAALTSELVRAGVAPSDWDFSPDSSMALTHPSVLPR
>NZ_CP040505.1|WP_051057835.1|430161_430425_+|hypothetical-protein
MSKADTSEAKPTGEQRPARRFWVALTIFAMSVFTLLSVLALIGLIFGPADIKALADHALPWSLLALALAGVAMAIAKRRPRAQADEA
>NZ_CP040505.1|WP_005962180.1|429114_429858_+|succinate-dehydrogenase/fumarate-reductase-iron-sulfur-subunit
MNLTLKIWRQNGPDDRGAMHEYQVKGISEGSSFLEMLDILNEDLFARGEEPIAFDSDCREGICGQCGIVINGVAHGPEVTTTCQLHMRTFHDGDVITIEPWRADAFPLIKDLVVNRSALDRIIQAGGYISVNTGAAPDAHATPVPKQDADRAFEAAACIGCGACVAACPNASAMLFTSAKVTHLQLLPQGKPENYKRVVNMLNQMDEEGFGTCSNIGECAAVCPKQIPLDVIATLNRQLGKAALKGI
>NZ_CP040505.1|WP_005962181.1|427138_429118_+|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit
MSDTLIKGFYHEGEKIADTKAPLDVPIAQCWEQRKFSAALVNPANRRKLRVIIVGTGLAGGAAAASLGEMGYNVDVFFYQDSARRAHSIAAQGGINAAKNYRNDNDSVYRLFYDTVKGGDYRARETNVYRLAEVSANIIDQCVAQGVPFAREYGGLLDNRSFGGVQVSRTFYARGQTGQQLLIGAYQALERQVAAGTVTEHARHEMVELIVSDGRARGIVARDMSTGKLETHVADAVVLATGGYGNVFFLSTNAMGCNATAIWRAHRKGAYFGNPCFTQIHPTCIPQHGDQQSKLTLMSESLRNDGRIWVPKKAEDCEKDPREIPEEDRDYYLERIYPSFGNLVPRDIASRQAKNMCDEGRGVGPKIDGVARGVYLDFADAIQRMGKDAVSAKYGNLFDMYERITGDNPYEVPMRIYPAVHYTMGGLWVDYDLESNLPGLYVAGEANFSDHGANRLGASALMQGLSDGYFVLPNTINDYLSKCFNLPKLDENSQDVVEALQDAQSRIDTLMSVNGSRSVDSFHKELGHIMWEYCGMERTEAGLKKAIGLIRELRKDYWLNVRVPGKSIGELNQSLEKAGRVADFMELGELMCIDALHREESCGGHFRAESQTPEGEAMRHDDQYLYVAAWEWTGEGEAPILHKEDLIYNNIELKQRSYK
>NZ_CP040505.1|WP_040313527.1|426420_427122_+|succinate-dehydrogenase-cytochrome-b-subunit
MATTNVATKKRRAWTTSVFIKQLMAVSGFVFVFFLLFHSYGNLKMFLGQEAYDHYAHWLKEEAFVPIFPHGGFIWVFRAAMLLMLLIHLFAAAYTWRRSKKARSSRYVVKKSVTDSYAARTMRLSGVLIFLIFVFHILHFTVGAVKTGFGADATPYERMVASFQSPLVVLLYLLFVALVCLHVSHGFWSMFQSLGWVRPATRKAMLILSGLVGAIILVMFMAPPLAIAAGFIS
>NZ_CP040505.1|WP_005962183.1|425659_426184_+|ribosomal-protein-S18-alanine-N-acetyltransferase
MSPRRVHIIRAGKSDAQLLLELEQLLFPEDPWTEGMIREELASPYSDYLLALAPDEETRAEDDDPSQVRGLARAGGLVFGYGGIKTLGDSADIMTIGILPQARRTGLGRMLVKALLEEGQGRGAGTVFLEVRESNQGARALYTSEGFREVGRIRRYFHNPLEDAITMLKELESN
>NZ_CP040505.1|WP_040313528.1|424967_425663_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MLSLCLDTSAATTVALVNDTLVLSRAANKSTRHHAESIAVLVTQVLTEAGLAPQGAAAGLDRVCVGTGPAPFTGLRAGLVSARVYARAAAIPVYGVSSLDAIARAALDLLPRETRVLAISDARRKELYWGLYTAEGADDVHLEGRLEVGSAAALLSSLRQRDLLIVSAGPIPAHSAEALAVAEFGPQVELDPAIFSRIVSARLARGEADSLSTAPLYLRRPEIHGQPMERL
>NZ_CP040505.1|WP_005962185.1|424333_424957_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MNAPLSATTRSPEQTRAVGRALGEVLQAGDLIMLRGGLGAGKTTFTQGIGEGMGVRGRVASPTFIVARVHHSLSGGPDLIHADAYRIRDLEDLETLDLDSSLADSVIVVEWGEGKTEAMSEERLEIDVERATGGEAAYDSDTINLETMDDGERRVELRPRGTRWDGVLDRVLARAREIIAEGEAQAFDEGEKTDDAGAESVAPASDE
>NZ_CP040505.1|WP_083879443.1|422779_424219_+|FGGY-family-carbohydrate-kinase
MPGPDHRRVITVLPVWLGLDVGTTGVRCLAVDEELRVVASSYAEAPPVHAPDGRVEQDPWEWVEASCHVIGDVVDEAGPSSVQALGISSQGISLIPVDRRGVPIRHAISWLDERGAHVMDDLAARVDPADVVARTGKPWSGVYTLPKIMWMRRFEPENYERVGAFLQPMDWLHLCFVGEAVTDRTLASASMAASLEDGLWDRDLLDALEIDSDLFPKIRQSGTEAGVLRREIGERLGVGTIPVRVGGQDQKLAAMAAGIGPDVATLCLGTSGALEVRADAPLPWGGPLFSFLEPGQWVREAAIPTAGAAHRWFVRTVLAGESYDLSDELAAVEPAADAPLFFPRLSDPSEHGWPHAPGGVMWGLGLGTNRADLARCVYEGVAFEVGDRWRRMGAEAETLRVFGGGARSEPWCRVIASVLGRPVERLHVAEASALGAAVSAGAPRMPLTSREVLPDESVMAWEEERFEHWRLIAARLDGG
>NZ_CP040505.1|WP_005962187.1|422303_422807_+|YjbQ-family-protein
MKVHRETIDLQSTRNHPTFHDVTKEVKAALKRSGVKDGIAVVYSHHTTCSVLTQECSHDKTYYGLEYLQQDLVNTMERIVPQCLVEGQYMHPGPAHIRFAMDEAKEEGEWTSLNTDAHLRSVFFGRSETIVVVDGELDLGEFGYIYFVDWDQIRDRPRQCQVQIIGE
>NZ_CP040505.1|WP_131247273.1|431882_433403_-|methyltransferase
MDPPFPGHHDCESVGHPRSKAFSVQVFSPIAPSAICTFEFSVLYSLRSTQLPLNSLQHSVLPLVLARSELSTSHSPLLPCAALTLALAHHGVLACENPPVPSSLDPLLTPEGSRLLADLEAEAFSPSDPLAAGEALRKRGIETRLANAVLTQLDLRRRARTKFGEDAGSLFFTRDGLEQATRKIVSERRARRYRDAGATSIADLGCGIGSDSLAFAKEDLAVLAVDLDEDAASAARLNLAAHPTAQVRRANVLDLDIPSLAHSGIDALFADPARRTGAQGGSARIMDPESWSPPLSLVLSWREAIPRVGVKVAPGIAHEALPADARVEWTSVDASLVEAAIWTGPLALEGAGRSAVVIKGNEVFVLAEKGPANALRVPAPLGPLGAFIAEPDDAVIRSGLIHRLAEETSSTLVSESIAYLSADTPLLSPFLSCFEVEDVVALKPKMISSALRSLGVGRVEVKKRGADIDPAALRKSLKLKGDGEAVVFATRVAGRHRAIIARRRRS
>NZ_CP040505.1|WP_005962176.1|433636_433933_+|co-chaperone-GroES
MSVSIKPLEDRVVIRQVEAERTTASGLVIPDTAKEKPQEGEVVAVGPGRIDDNGNRVPLDVKVGDVVIYSRYGGTEVKYGAEEFQILSARDVLAIVER
>NZ_CP040505.1|WP_131247271.1|434157_434934_-|cytochrome-c-biogenesis-protein-CcdA
MVLPAFFAYAFQSKRALAWRTLLFWLGLLAALIPLGALVGAASHALRESLPLITALSALLLIILGTIEALGFSLPRFRGRSRPGAKSRDRTHPLSIFLLGAGYGFAGIGCAGPILGGVLVAAGLGGSPLQGALLMACYASGMALPLGLLALIWRSARLFERPWMRPRPLLLFGRETTWTNLLSGLLLVIFGVLLLVSGTSNPLSGLVSPARLASWEESVLSFATLVPGWALIVALAAVLGATWYMRPRSLSGSEEESE
>NZ_CP040505.1|WP_005962174.1|434999_435818_-|thioredoxin-domain-containing-protein
MLSSPRPSTARSPLVAVLLLIIAALVITLGVFLADRHRLTSELAQARAAQSADSPTSPSEESPDAQKGKTAQDPNAPAPTETRPDVLEILHSQVKRDPHDAQAKGKVDAKVVMVVYSDFACPYCTLFAKDVAPALDDLIEDGTLRIEWRDLAQITASSPLAAQAGRAAGEQNRFWEFHDAVYAAAGEGEHPEYTQESLIEFAKQAGVGDLEAFSRAMNAPETVAAVEAAKQDAYAVGITGTPFMIIGDSFVPGYRGPESVRATVEAQAAAAQ
>NZ_CP040505.1|WP_040313525.1|435920_436211_-|WhiB-family-transcriptional-regulator
MTDVSRLPGPMVDAWDWQYDGACRNLDTELFFHPEGERGSTRRRRAANAKAICANCPVIDQCREYALAAQEPYGIWGGMTEEERREEIRSKTRRVS
>NZ_CP040505.1|WP_005962172.1|436562_437486_+|MerR-family-transcriptional-regulator
MPRAHLGTERSVGAPLTVTAVSVKLGIPPSTLRTWERRYGLGPSDRRTGEHRRYVDSDIARLARMVELVRRGVTPANAAAIARNWSESDEAPDSLPPHCVHDLVTTTRNATPKALRECLAAAISTEGLVHTWSRLVSPALDRLRGDARGELPGSAPSIQLNAAFLEVLGSIAKQRPRRKNPLASIAILTDTMHELAAHVVGVALMWYGIDARVVTTGRIGMEIGPDRFRAHIENRPIELAIVMGTDADCEVLIRVIAQDSEVDVLLVGADAPPVVDARVMRVRTPAACVEEVLAMLAPGVDLTEIGG
>NZ_CP040505.1|WP_131247162.1|437817_439101_+|N-acylglucosamine-2-epimerase
MHTPWNEESLLKSFDEDFTELIRFASASAVDSGFAALDAHGLVAPDSPVELWISARMTYVFALAQLRGLEGAEALVRHGLRSLRGPFHDDEFGGWFSALDSHDEDAAPAPGARKEGYAHAFVILAAAAAQLAGHEEARDLLDEALENQDRHWWEPSFGRVRNSWKRDWSECEDYRSLNTSMHTVEAYLAAFDASGQRRWLDRAREMTRFVADLGARFAWRLPEHFDASWRVQAQMFIENSADPFRPYGATPGHGFEWVRLILHARAALIAIGDTPGAWMLEVARALVERADEDGWDAGRVGGIVYTTDFDGRPVVSTRMHWAGAEAVNAALILGRVLEEEGDEAGVEACTERFSRYVSWMDQYAHEGPGRWIHEINERGEPGCSVWPGKPDAYHIAQMLTLPRIGVHPGFAAALKQAASAWKETGEC
>NZ_CP040505.1|WP_005962170.1|439240_440764_+|IMP-dehydrogenase
MGDISTTDAFGLTGLTYDDVLLLPELTDVVPSTVDTTSRLTKKISLRVPLLSAAMDTVTEARMAIAMARQGGIGILHRNLSIEEQAQQVRLVKRSESGMVEDPVTVGPEATIEQLDELCGHYRVSGLPVVSEDGHLLGIITNRDLRFVPQSDWARLKVRDCMTPRERLVIGHVGISREDAKTLLAEHRVEKLPIVDEDDRLTGLITVKDFVKTEQYPNATKDARGRLIVGAAVGYWGDTWERATALAEAGVDVLVVDTANGGAKLALDMIRRIKNDPAFDGIEIIGGNVATTEGAQALIDAGVDAVKVGVGPGSICTTRVVAGVGVPQITAIALAAKACGPAGVPLIADGGLQYSGDIGKALVAGADTVMLGSLLAGCEESPGEVVFTNGKQFKRYRGMGSLGAMSSRGRKSYSKDRYFQADVTSDDKIVPEGIEGQVPFTGSLASVIYQLVGGLHQTMFYLGASSIEEIKKNGRFVRITSAGLRESHPHDVQMTSEAPNYHSTSGR
>NZ_CP040505.1|WP_005962169.1|440985_441675_+|transaldolase
MLILIDHANVDAIKETLKYLPIDGVTTNPSILYREGKEPLEVLHNIRAVLPTTSQLHVQIVSETAEAMVDEARALRSELGGNLFVKLPVTREGFRAIPLIVAEGMQVTATGIHSSMQGFMAAKAGARYVAPYVNRMDNYGIDGVRVATEIHKTLRSYGLEADVLAASFKNSEQVLELVRQGVGAITAAPDVLEALIKNPATDAAIAEQNRHFDILVGNKRSWKDLIDEK
>NZ_CP040505.1|WP_040313524.1|441679_442408_-|DNA-polymerase-III-subunit-epsilon
MNSTTTWSEVPWLGFDTETTGVDPATDRLVTAALVLRLDGARAGREDQVRTWLADPGVEIPAQASAVHGITNDMAKSQGRPIEEVLDEVAATLVEHWRRGFPVVAFNASYDITLLDAELARHNMGTFAQRLDATPMLLIDPLVLDRALDRYRKGKKTLTDMAPVYGVDASADAHTAEVDVQMTLDVLAGMARRFDSVKAMSAGQLHAYQVQAHREWAIDFENFLRSKGREASIDPAWPMLAH

Crispr_ID: NZ_CP040505_18

• CRISPR_ID: NZ_CP040505_18
• CRISPR_location: 512072-512207
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 2 spacers
• Cas_protein_info: cas3

Consensus repeat of NZ_CP040505_18

Consensus_repeat	Method
TGCTTGGCGCGCCGATTGGGACGCCT	CRISPRCasFinder

spacers of NZ_CP040505_18

>18.1|512098|31|NZ_CP040505|CRISPRCasFinder
GATCTACTCGGCTGGCCTGGCTGCTTTGCGT
>18.2|512155|27|NZ_CP040505|CRISPRCasFinder
CCTCTGTTTGGCGTGAATGCTCTGTCG

CRISPR arrays and Neighbor proteins around NZ_CP040505_18

CRISPR arrays

The CRISPR arrays of NZ_CP040505_18

>merge|NZ_CP040505|18|512072-512207|CRISPRCasFinder
TGCTTGGCGCGCCGATTGGGACGCCTGATCTACTCGGCTGGCCTGGCTGCTTTGCGTTGCTTGGCGCGCCGATTGGGACGCCTCCTCTGTTTGGCGTGAATGCTCTGTCGTGCTTGGCGCGCCGATTCGGGCCGCG

>NZ_CP040505|18|17|512072-512207|CRISPRCasFinder
TGCTTGGCGCGCCGATTGGGACGCCT	GATCTACTCGGCTGGCCTGGCTGCTTTGCGT
TGCTTGGCGCGCCGATTGGGACGCCT	CCTCTGTTTGGCGTGAATGCTCTGTCG
TGCTTGGCGCGCCGATTCGGGCCGCG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_040314463.1|515036_516245_-|IS110-family-transposase	unknown	unknown	gnl|CDD|376564
NZ_CP040505.1|WP_005962102.1|520143_520824_-|hemolysin-III-family-protein	unknown	unknown	gnl|CDD|224191
NZ_CP040505.1|WP_005962101.1|521094_521853_+|isoprenyl-transferase	unknown	unknown	gnl|CDD|237825
NZ_CP040505.1|WP_005962108.1|513488_513884_+|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl|CDD|223619
NZ_CP040505.1|WP_005962103.1|519498_519978_-|transcription-elongation-factor-GreA	unknown	unknown	gnl|CDD|234693
NZ_CP040505.1|WP_005962116.1|504309_505602_+|phosphopyruvate-hydratase	unknown	unknown	gnl|CDD|234617
NZ_CP040505.1|WP_005962109.1|512482_513442_+|hypothetical-protein	unknown	unknown	gnl|CDD|378959
NZ_CP040505.1|WP_005962119.1|498993_499611_+|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl|CDD|235457
NZ_CP040505.1|WP_005962115.1|506087_506795_+|septum-formation-initiator-family-protein	unknown	unknown	gnl|CDD|368217
NZ_CP040505.1|WP_005962099.1|522406_523342_-|carbohydrate-kinase	unknown	unknown	gnl|CDD|238572
NZ_CP040505.1|WP_005962112.1|507706_508675_+|Ppx/GppA-family-phosphatase	unknown	unknown	gnl|CDD|223326
NZ_CP040505.1|WP_131247423.1|508949_510116_-|IS1249-family-transposase	unknown	unknown	gnl|CDD|307151
NZ_CP040505.1|WP_005962118.1|499607_503198_+|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl|CDD|224118
NZ_CP040505.1|WP_005962117.1|503474_504062_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962107.1|514319_514928_-|peptide-methionine-(S)-S-oxide-reductase-MsrA	unknown	unknown	gnl|CDD|234604
NZ_CP040505.1|WP_005962114.1|506791_507307_+|DUF501-domain-containing-protein	unknown	unknown	gnl|CDD|377352
NZ_CP040505.1|WP_005962105.1|516949_518371_+|AI-2E-family-transporter	unknown	unknown	gnl|CDD|223701
NZ_CP040505.1|WP_005962120.1|498085_498997_+|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl|CDD|238141
NZ_CP040505.1|WP_005962098.1|523386_523662_-|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl|CDD|179195
NZ_CP040505.1|WP_131247160.1|510513_511836_+|Na+/H+-antiporter-NhaA	unknown	unknown	gnl|CDD|377746

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP040505.1|WP_005962118.1|499607_503198_+|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	2.3e-13	44.6	0.1

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_040314463.1|515036_516245_-|IS110-family-transposase	gnl|CDD|376564	pfam01548, DEDD_Tnp_IS110, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes an amino-terminal region of the pilin gene inverting protein (PIVML) and of members of the IS111A/IS1328/IS1533 family of transposases. The C-terminus is represented by family pfam02371.	1.09539e-48
NZ_CP040505.1|WP_005962102.1|520143_520824_-|hemolysin-III-family-protein	gnl|CDD|224191	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only].	3.39445e-50
NZ_CP040505.1|WP_005962101.1|521094_521853_+|isoprenyl-transferase	gnl|CDD|237825	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional.	1.12562e-121
NZ_CP040505.1|WP_005962119.1|498993_499611_+|aminoacyl-tRNA-hydrolase	gnl|CDD|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	8.82609e-84
NZ_CP040505.1|WP_005962103.1|519498_519978_-|transcription-elongation-factor-GreA	gnl|CDD|234693	PRK00226, greA, transcription elongation factor GreA; Reviewed.	9.44804e-51
NZ_CP040505.1|WP_005962116.1|504309_505602_+|phosphopyruvate-hydratase	gnl|CDD|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP040505.1|WP_005962109.1|512482_513442_+|hypothetical-protein	gnl|CDD|378959	pfam12811, BaxI_1, Bax inhibitor 1 like. The Bax-inhibitor-1 region of the receptor molecules is conserved from bacteria to humans.	1.51071e-76
NZ_CP040505.1|WP_005962108.1|513488_513884_+|peptidyl-prolyl-cis-trans-isomerase	gnl|CDD|223619	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones].	3.26441e-31
NZ_CP040505.1|WP_005962115.1|506087_506795_+|septum-formation-initiator-family-protein	gnl|CDD|368217	pfam04977, DivIC, Septum formation initiator. DivIC from B. subtilis is necessary for both vegetative and sporulation septum formation. These proteins are mainly composed of an amino terminal coiled-coil.	1.19914e-10
NZ_CP040505.1|WP_005962099.1|522406_523342_-|carbohydrate-kinase	gnl|CDD|238572	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.	6.94164e-64
NZ_CP040505.1|WP_005962112.1|507706_508675_+|Ppx/GppA-family-phosphatase	gnl|CDD|223326	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism].	6.00617e-72
NZ_CP040505.1|WP_131247423.1|508949_510116_-|IS1249-family-transposase	gnl|CDD|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.88455e-06
NZ_CP040505.1|WP_005962118.1|499607_503198_+|transcription-repair-coupling-factor	gnl|CDD|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NZ_CP040505.1|WP_005962107.1|514319_514928_-|peptide-methionine-(S)-S-oxide-reductase-MsrA	gnl|CDD|234604	PRK00058, PRK00058, peptide-methionine (S)-S-oxide reductase MsrA.	9.36931e-83
NZ_CP040505.1|WP_005962114.1|506791_507307_+|DUF501-domain-containing-protein	gnl|CDD|377352	pfam04417, DUF501, Protein of unknown function (DUF501). Family of uncharacterized bacterial proteins.	1.13868e-53
NZ_CP040505.1|WP_005962105.1|516949_518371_+|AI-2E-family-transporter	gnl|CDD|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	9.54659e-59
NZ_CP040505.1|WP_005962120.1|498085_498997_+|SGNH/GDSL-hydrolase-family-protein	gnl|CDD|238141	cd00229, SGNH_hydrolase, SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.	3.2602e-19
NZ_CP040505.1|WP_005962098.1|523386_523662_-|exodeoxyribonuclease-VII-small-subunit	gnl|CDD|179195	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional.	1.4602e-16
NZ_CP040505.1|WP_131247160.1|510513_511836_+|Na+/H+-antiporter-NhaA	gnl|CDD|377746	pfam06965, Na_H_antiport_1, Na+/H+ antiporter 1. This family contains a number of bacterial Na+/H+ antiporter 1 proteins. These are integral membrane proteins that catalyze the exchange of H+ for Na+ in a manner that is highly dependent on the pH.	3.18617e-144

Protein sequences

>NZ_CP040505.1|WP_131247160.1|510513_511836_+|Na+/H+-antiporter-NhaA
MVTGSDRIGGPQPTEGPRPMSPAKTHGTPRPHHRPMRTPLVRMRDAVLEFLGDETKAGLLVIIIALLALIISNSPLSDAYSQLSHAHFGPSALGLNLSVHEWAADGLLTIFFFVVGLELKTEFVTGALRDMKEAALPMLAAAFGMLGPALVYAAFQAVTGSGAWSGWAVPTATDIAFAVAILSIFGKGMPPAARTFLLTLAVVDDLLAILVIAFFFSSGLNFIALFASFAFIGLFGLLTSEGMRRPWILIPIGVIAWACMLNSGVHATIAGVLLGLIVPATRTRKGQMTHEFAHTVGPWSAGLALPVFAFFAAGVSVLGAEGGLFGALGDPVTLGIALALPLGKFLGIWGSVWALTKWTKLRLAHGVDLPDVAAMALLAGIGFTVAMLIGGLAFTDELLIAHARLGVIIGTFASAILGAIALKMRISVHVRGDAAKRKKR
>NZ_CP040505.1|WP_131247423.1|508949_510116_-|IS1249-family-transposase
MSVDKRPKCPICRAPMNANGKTSSRTPRWRCRNCSFSTVLKRPDVTRRHDLEAFINYATGKTSQAERDGTLTGRSFRQRTSWCWQVPPPLPVMDGVIHDQVFIDGIFLSHSWVILIATDGRTPLNWVTAGRENATAYTQLLSPLPPPGIITTDGAGGALAAIRTLWGPDQPVQRCLVHVHRNNTVDLTHNPHTPAGKALKGLSHSLLRVTTMDEAAHWASLLAAFHTEYAHYLKERTYASQDPEKAAATGKKWWYTHERDRRVYYRLERLLKNKQLFTFLTDPGRPNLASTTNPIESLNAQIRALLRAHAGWNTTRQITAIHWFLAHHQHPINAATVLAEWDKHARQPHTIIPTTHKQQPRPDGPTHYDNAYSPDTGFHTRKGWAGRT
>NZ_CP040505.1|WP_005962112.1|507706_508675_+|Ppx/GppA-family-phosphatase
MTRVAAIDCGTNSVRLLVADAERKEDGSISLKDLTRQMRIVRLGQGVDKTGRLDPAAIDRTIDAIVEYERMISRLGATATRFVATSASRDAENRDDFVAAVREVLNIEPEVVEGTEEASLSFTGAVSGLGADATAPMLVVDIGGGSTELVLGDSEVRQAISIDMGAVRVTEKFFAHCSPEAGIPLEDQERAIAWIDEQLDAAEKVVDIDRVRTLIGVAGTITTLTAQGLGLTAYQPELIHGARLSLEETEAAIRFMVDQPIAVKAALGFMPEGRQDVIAGGALIWSRIVTRVLEKAATRGTVISTIITSEHDILDGIAMSLA
>NZ_CP040505.1|WP_005962114.1|506791_507307_+|DUF501-domain-containing-protein
MTTNPTDPSIATPADLEVLREQLDRVPRGVVGIAARCVCGRPLVVKTAPRLEDGTPFPTTFYLTCPPIVKGCSVLEAEHIMESFNELLTNDEDIAAAYLRAHRDYIARRDELGEVEEIAGVSAGGMPTRVKCLHALVGHALAAGAGVNPIGDLALEMLAERGLWSRERCSC
>NZ_CP040505.1|WP_005962115.1|506087_506795_+|septum-formation-initiator-family-protein
MKRDTSTPITPEKSDPKERLERARALRERRNAPSSRERPVNGPRPVRQSGKGRSQKKEKAPRRQHFLSRGESFELGGQRFSVRWLSFILLLGVVMVLLVPKLYVWMKQEEELRAITIQVQLAQQRNAEMQEKLELWNDPEFIASQARERLGYVKPGETQYTVVDPGEGYQDLAQVAAAAVEGPARPWLQVVAILLEEADHAKIDEDGHSDPAAQSGAADSSETDSNAENTEEDAQ
>NZ_CP040505.1|WP_005962116.1|504309_505602_+|phosphopyruvate-hydratase
MENDVARIEAIGAREILDSRGNPTVEVEVMLEDGTLSRASVPSGASTGAFEAVERRDGDKGRYLGKGVQDAVDAVTDVIAPELIDEDASDQRHIDEAMLDLDGTDNKGRLGANAILGVSLAVARAAADSAGLPLYHYLGGPNAHVLPVPMMNILNGGSHADTNVDIQEFMIAPIGAPTFREALRWGAEVYHTLKSVIKGRGLSTGLGDEGGFAPNLDSNAAALDLIIEAIEKAGFKPGRDIGLALDVASSEFFKDGLYQFEGEGRSTDYMVSYYEKLISDYPLVSIEDPLSEDEWDAWKALTAEIGNRVQLVGDDLFVTNPARLRKGIELGAANALLVKVNQIGSLTETLDAVEEAHRNGYRSMTSHRSGETEDTTIADLAVATNSGQIKTGAPARSERVAKYNQLLRIEEELGDSAVYAGASSFPRASF
>NZ_CP040505.1|WP_005962117.1|503474_504062_+|hypothetical-protein
MFTVKKAAVIAASFVVALGLGACSAHPGSAFVLNGVSYSESDLAAASAQYNAMTGGTLTSSSLVPTLVNVETIDAAAQMIGITVSDQDVDLYFASLVEQGRIQAPEEGELTPVMREIIRSTLVQQLLGQLNEPQREAMTEAYAQLKETMELEVNPRYASMDAEGQTLTPLFGDVVQATTSTHKLLNGGGAPRPQN
>NZ_CP040505.1|WP_005962118.1|499607_503198_+|transcription-repair-coupling-factor
MKLTGLAPLIGTDEALDRATGSLASKRNATLVAPLGVRPPALAALAQASSDLPLVVLTATGREAERLTAALRSWSDAVEMLPAWETLPHERLSPQVDTMARRIAVLRRLAHPVEGDPHAGPLSILVIPIRAFLQPVIRGLAEREPVRVHVGDRVDLPDLARRLGELGYQRVDMVEGRGQLSIRGGILDVFPPQEAHPVRVELWDDEVDEIRAFSVQDQRTLGALDDGLWATACRELLLTRAVRARARELAAELPGAAEMLALASEGIPAPGIESLAPVLSSGMERLLDLLPAGSPIICSDPERVRARAADLLATTEEFLAAAWSVAAEGAQTPLEASQASFLNFEELWASDSRPWWELSALPPAELAEALGESEEDESGAQKDTRALVVSSSLMAMGAREVRPYRGDFAAACTDLGGLAKNGWTIVVTTEGPGPARRIRTILSEAEVPATLVDDILDAPQPGTVVVTTAQAGSGFVAPELKLAILSESDLTGRVGASTRDMRRMPSRRKKGVDPLSLTPGDYIVHDQHGIGRFIELVSRTTGRGEAAVRRDYLVLEYAPSKRGQPGDRLYVPSDCLDQISKYTGSDQPSLTKMGGADWAKTKAKAKKAVNEIAKELIRLYAARQATKGHAFAPDTPWQRELEDAFPYVETPDQLVTIDEVKADMEKPIPMDRLLTGDVGYGKTEIAVRAAFKAIQDGKQAAVLVPTTLLVQQHIETFTERYAGFPVTIAALSRFSTPKEAEEVKAGLASGKIDLVIGTHSLLTGAISFKALGLVIIDEEQRFGVEHKETLKAIRTDVDVLSMSATPIPRTLEMAVSGIREMSILQTPPEERQPVLTFVGAYTDAQVSAAIRRELLRDGQVFFVHNRVDSIASVAAHIQELVPEARVRVAHGKLSEHQLEEVIVDFWNHEFDVLVCTTIVETGLDISNANTLIVDRADVFGLSQLHQLRGRVGRGRERAYAYFFYPADKTLTETAHERLKTIAANTDLGAGLAVAQKDLEIRGAGNLLGGAQSGHVEGVGFDLYVRMVADAVAAYRGQAREEKSDLRLDIAVDAHIPEEYVPGERLRLEVYAKIAAITSPEQEADVREELIDRYGPLPREVELLFLISRLRRLVRSTGIEEIVTQGKYVRVGPVELRDSQVLRLKRLHPGSVIKAAVRQVLVPLPLTQRIGGTPLVDEALLQWVETLVTKVLTPFSS
>NZ_CP040505.1|WP_005962119.1|498993_499611_+|aminoacyl-tRNA-hydrolase
MTPTSPWLVVGLGNPGAEYASTRHNVGHLSVDVLQRRCGETWSGHRTGTHIVQARLGILPGGAPGPKVILAKSDSYMNTSGGPIGRLMRFFDVPAERLLVIHDDLDLPPHELRLKFGGGEGGHNGLKSISQALGTKNYHRLRIGIGRPPGRMEVVDFVLSTIPSKERPEWEVTFEETADLVESIVTCGFAHTQQELHSKNASTRA
>NZ_CP040505.1|WP_005962120.1|498085_498997_+|SGNH/GDSL-hydrolase-family-protein
MGVKRSIGYGLAGSSILGVGVAAKRLFALDRQRGAYRRAWESHSLATLKWLSDLDGQGGTTGALEDRDEENAGAKDEENAHAQRPFVYVALGDSSVQGIGASSVEESYPARLASAIETAKGQKVALINISLSGATSESVEMGQIPLMRGLGLLDPGSEPDLVTLTIGGNDVMVPQITPSAYSLAIARILDALKGRVLVSTIPSFAPMSQDARAQDMSELLAEEARAHGAGLVDIRALSQSWSLASYAFHYHAADMFHPNTQAYAAWAQEFYNVLAKDAGLRPLDVASAPQWGIGSHRVAESEA
>NZ_CP040505.1|WP_005962109.1|512482_513442_+|hypothetical-protein
MSNPVFDKLETQWAQQSRTPAGYPSMPGYQPGAYPNAGGAQWTPGTAQGTQQTAGTIPYGAPYGEPNAQAPQYPGGPLEEAYRAPAADAVDRGVMTYDDVIMKMAISMGVLFASAFVSWSVSAVDASLGAMLSLVGFIGGFILAMMNTFSKKIRPALVLTYAGFEGLALGAVSQVFELIYPGIVVQALIATAAVFGVTLALFASGKVRNSSKLMRFTLIALVSILVYRLLSMVLTLTGVLSSGGFDSITIMGIPLGIAVGLIAVFVGASCLIQDFDQAKIGVERGVPAKYAWACAFGILVTVVWMYLEILRLIARFRNN
>NZ_CP040505.1|WP_005962108.1|513488_513884_+|peptidyl-prolyl-cis-trans-isomerase
MENITVTGDFGRKPSLTFENTPSEELLVEVLNEGDGQVVEAGDTIHCHYLGQIFNGGVFDNSYDRGQALSFQIGVGMVIRGWDDGLVGQRVGSRVLLSIPPEYGYGARGVPQAGIGGTDTLVFVTDILGVA
>NZ_CP040505.1|WP_005962107.1|514319_514928_-|peptide-methionine-(S)-S-oxide-reductase-MsrA
MTAKLRTNGSFSFLSTPAALNAPIDKEPGEGEEVIYLAAGCFWGVDKSFWSAPGVVATATGYMGGELENPSYELVCTNTTGHAETLRVVYSVETTCAAEIISRFFEIHDPTQVNRQGNDIGTQYRSAIWTTTPEQLDTALRARDAYQEELASRGFCAIATEIASVQDAGPFWYAEDYHQKYLFKNPNGYECHARTGVPCPIV
>NZ_CP040505.1|WP_040314463.1|515036_516245_-|IS110-family-transposase
MQTSSIDVFIGIDVGKSDHWATALDRDGNRLFDKALPNDETRLRDLYERLARHGRVLVVVDQPATIGALAVAVAQDMGIPVGYLPGLSMRRIADLTPGNAKTDARDAAVIAQAGRTMPHTLRAINGSDQDAAALSMLTGFDLDLARQVNQTSNRIRGLYTQIHPALEKVLGPRLEHDAVLEVIASWPVPTALRKAGRVRVAAKLKAHGARRHEAWAGEIISALEAQNVVVIGTDAAGIVLPHLARQLIALHAQRRDVAAKVEALVEAHPLYQVLTSMPGIGVRTAAVFIAETLGRSFDTGAHLASYAGLTPVTRRSGSSIRGEYTSHAGNKRLKRAMFLSAFASLRSDPVSRAYYDRKIAQGKRHNQAVIALAHRRILTLHAMIRNATLYNPQPTHQLPTVA
>NZ_CP040505.1|WP_005962105.1|516949_518371_+|AI-2E-family-transporter
MSDDSSRALRSISEFFERFAGPRLSRASDFDPEPMEFRRGDPLDGRRDAADAVPWAMKVAASLSWRAIVIAVAAAGIVWGAMHLSIIIMPVAIALLLAVLLEPLVGWFTRRLNFPRTLSAVLGLLVMLAVVVASLSQAGSEIFRQLPRLFTKANDGISELMRWLGEGPLKLDTTMINQGIEKVQGELANWAQANSSFLASSALSVTSSLFSVLSSVLIMLFCLFFFLKEGRTIWLWVVRLFPAPARQPLHESAIRGWVTLGSYVRTQIQVAAIDAIGIGLGAFFLGLPMVLPIVVVVFFASFVPIVGALVSGAIAVLVALVDQGLTAGVIMLVVIFVVQQVESNLLQPLLMSHAVSLHPVAVLLVVAASGSVAGIPGAIFGVPIAAFLNATFLYLHGYDSMPALANDPKRPGGPPGMLEDMVAASYASKTKVDPREGASAVDSKDEDENAQDCSEDAPSVEPESGAKDEAHEE
>NZ_CP040505.1|WP_005962103.1|519498_519978_-|transcription-elongation-factor-GreA
MADTQWLTQAQYDLLKEELRERIEVKRPEIAKLIDAARQEGDLRENGGYHAARNEQSMNETRIQTLQEMLEHAEVGETPADDGVVEPGMVVTATVAGREQTFLLGSRDAGGDLGVQVFSTQAPLGAAVIGHRPGDKLSYEAPNGRVIEVEIIEAKPFVG
>NZ_CP040505.1|WP_005962102.1|520143_520824_-|hemolysin-III-family-protein
MRVASLKPMSWFPNQLVAIKPHLRGWLHLVAAPLSLAASIVLVVLAPTTPEKWASAVYLAASLLLFGISALYHRFYWKPSWEVVWRRLDHSNIFLLIAGTYTPLTVALLNSHDQIVLLSTVWTGAAAGILVNLFWPSAPRWLSTLIYVVLGWTAVAYLPQLWTAGGAAVIILIVVGGLLYTLGALVYGMKRPNPSPKWFGFHEIFHAFTVAAWACQCVAVYLAVLA
>NZ_CP040505.1|WP_005962101.1|521094_521853_+|isoprenyl-transferase
MSVWSLAYDLYEKRLRGELAKGSIPRHIGVILDGNRRWAKSIGVQASQGHRAGADKISEFLGWADEVGVEIVTLWMLSTDNLSRSSEELDELLGIIADAVDHLAAQKWCLAVVGDLDLLPEAIAERIRSAVASTSSRNTMRVNIAVGYGGRHEITEAVRQIISDAAAKGISLEELANTLTDADITDHLYTKDQPDPDLVIRTSGEQRLSGFMIWQSVHSEFYFCEAYWPDFRRVDFLRAMRSYGQRERRLGR
>NZ_CP040505.1|WP_005962099.1|522406_523342_-|carbohydrate-kinase
MDLATEPHILAIGEALIDIVTPISHPEDAREIPGGSPANVAMTLGRLGRPAVLSTWFADDERGRLIEEHFTASRVVITPESHGAQRTTTATAMIDEKGAATYTFDFDWNPTPPIPVSEMALIVHAGSISAAVEPGANAVFEAVKDARPHALITFDPNARPTVMGDPDNALKLVERFVSVSDVIKVSDEDIAWLTGGAELESVIEKWLSMGPRLIIVTRGKKGGLAVSASGIRYEATPGEVKVVDTVGAGDSFMGGILDAMWGLGLAGTEGRSALENIGLDAVKTILDHASKVSDVTVSRAGANPPWADELD
>NZ_CP040505.1|WP_005962098.1|523386_523662_-|exodeoxyribonuclease-VII-small-subunit
MPENELPEVQTLGYEQARDELIGIVRSLESGQAPLEDTLALWERGEALADRCRAILDAASARLSRAEAPTSHADVPLSRADTPASDSGQLD

Crispr_ID: NZ_CP040505_19

• CRISPR_ID: NZ_CP040505_19
• CRISPR_location: 618073-618149
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP040505_19

Consensus_repeat	Method
GAGTTTGTACGCCGGGGCCCGCGTG	CRISPRCasFinder

spacers of NZ_CP040505_19

>19.1|618098|27|NZ_CP040505|CRISPRCasFinder
CGACGTGTTGCACCGGTGGATACCAGT

CRISPR arrays and Neighbor proteins around NZ_CP040505_19

CRISPR arrays

The CRISPR arrays of NZ_CP040505_19

>merge|NZ_CP040505|19|618073-618149|CRISPRCasFinder
GAGTTTGTACGCCGGGGCCCGCGTGCGACGTGTTGCACCGGTGGATACCAGTGAGTTTGTGCGCCGGGGCCCGCGTG

>NZ_CP040505|19|18|618073-618149|CRISPRCasFinder
GAGTTTGTACGCCGGGGCCCGCGTG	CGACGTGTTGCACCGGTGGATACCAGT
GAGTTTGTGCGCCGGGGCCCGCGTG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005961973.1|609037_609454_-|metallopeptidase-family-protein	unknown	unknown	gnl|CDD|240574
NZ_CP040505.1|WP_138588749.1|624964_625591_+|flagellar-biosynthesis-protein-FlgA	unknown	unknown	unknown
NZ_CP040505.1|WP_005961941.1|627932_631088_-|SMC-family-ATPase	unknown	unknown	gnl|CDD|223496
NZ_CP040505.1|WP_040313506.1|622004_622478_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_040313698.1|609681_610134_+|DUF3499-domain-containing-protein	unknown	unknown	gnl|CDD|378788
NZ_CP040505.1|WP_131247261.1|612891_614448_+|sensor-histidine-kinase	unknown	unknown	gnl|CDD|223715
NZ_CP040505.1|WP_040313507.1|617383_618028_+|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl|CDD|238308
NZ_CP040505.1|WP_083879438.1|610688_611834_-|hypothetical-protein	unknown	unknown	gnl|CDD|370818
NZ_CP040505.1|WP_131247259.1|622474_623176_-|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl|CDD|212030
NZ_CP040505.1|WP_005961943.1|627163_627628_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005961961.1|616361_617204_+|ComF-family-protein	unknown	unknown	gnl|CDD|223970
NZ_CP040505.1|WP_005961963.1|614447_616121_+|hypothetical-protein	unknown	unknown	gnl|CDD|237448
NZ_CP040505.1|WP_005961949.1|624604_624814_-|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl|CDD|378935
NZ_CP040505.1|WP_083879439.1|604225_607402_+|glycosyltransferase-family-2-protein	unknown	unknown	gnl|CDD|224137
NZ_CP040505.1|WP_005961975.1|607398_608799_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005961950.1|623607_624174_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005961945.1|625587_627159_+|MinD/ParA-family-protein	unknown	unknown	gnl|CDD|349765
NZ_CP040505.1|WP_005961956.1|619077_621957_+|preprotein-translocase-subunit-SecA	unknown	unknown	gnl|CDD|237259
NZ_CP040505.1|WP_005961967.1|611981_612662_+|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|223816
NZ_CP040505.1|WP_005961939.1|631084_632293_-|exonuclease-SbcCD-subunit-D	unknown	unknown	gnl|CDD|223497

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005961973.1|609037_609454_-|metallopeptidase-family-protein	gnl|CDD|240574	cd12954, MMP_TTHA0227_like_1, Minimal MMP-like domain found in a group of hypothetical proteins from alphaproteobacteria and actinobacteria. The subfamily includes some uncharacterized bacterial proteins which show high sequence similarity with Thermus thermophilus hypothetical protein TTHA0227. However, they do not contain the conserved HExxH (x could be any amino acid) motif. They may not have any zinc metallo-peptidase activity.	1.08573e-16
NZ_CP040505.1|WP_005961941.1|627932_631088_-|SMC-family-ATPase	gnl|CDD|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	2.27944e-62
NZ_CP040505.1|WP_040313698.1|609681_610134_+|DUF3499-domain-containing-protein	gnl|CDD|378788	pfam12005, DUF3499, Protein of unknown function (DUF3499). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 125 to 163 amino acids in length.	3.06689e-47
NZ_CP040505.1|WP_131247261.1|612891_614448_+|sensor-histidine-kinase	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	9.42717e-53
NZ_CP040505.1|WP_040313507.1|617383_618028_+|ribosome-associated-translation-inhibitor-RaiA	gnl|CDD|238308	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD).	1.42381e-22
NZ_CP040505.1|WP_083879438.1|610688_611834_-|hypothetical-protein	gnl|CDD|370818	pfam10110, GPDPase_memb, Membrane domain of glycerophosphoryl diester phosphodiesterase. Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase.	3.39721e-09
NZ_CP040505.1|WP_131247259.1|622474_623176_-|LysM-peptidoglycan-binding-domain-containing-protein	gnl|CDD|212030	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.	3.48016e-06
NZ_CP040505.1|WP_005961961.1|616361_617204_+|ComF-family-protein	gnl|CDD|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	8.18802e-13
NZ_CP040505.1|WP_005961963.1|614447_616121_+|hypothetical-protein	gnl|CDD|237448	PRK13614, PRK13614, lipoprotein LpqB; Provisional.	2.65347e-40
NZ_CP040505.1|WP_005961949.1|624604_624814_-|helix-turn-helix-domain-containing-protein	gnl|CDD|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	4.28396e-08
NZ_CP040505.1|WP_083879439.1|604225_607402_+|glycosyltransferase-family-2-protein	gnl|CDD|224137	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only].	8.53582e-17
NZ_CP040505.1|WP_005961945.1|625587_627159_+|MinD/ParA-family-protein	gnl|CDD|349765	cd03111, CpaE-like, pilus assembly ATPase CpaE. This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.	1.4745e-17
NZ_CP040505.1|WP_005961956.1|619077_621957_+|preprotein-translocase-subunit-SecA	gnl|CDD|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NZ_CP040505.1|WP_005961967.1|611981_612662_+|response-regulator-transcription-factor	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.87427e-85
NZ_CP040505.1|WP_005961939.1|631084_632293_-|exonuclease-SbcCD-subunit-D	gnl|CDD|223497	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair].	2.29549e-45

Protein sequences

>NZ_CP040505.1|WP_040313507.1|617383_618028_+|ribosome-associated-translation-inhibitor-RaiA
MDITVVARNAEIHPNFRAYVEEKVSKVTQFYPRAQRVDVELTHERNPRQADTAERIELTVYGKGPIIRAEAESADRYAAVDIAAGKLFERLRRMRDRAKDHRRRYPRELDEVEVIEEVAPVEEVPVPEAPAHLRSAEDLKVGEAREEQLGDSPIIVRQKVHEAAPMTVDEALDQMEMVGHPFFLFVDKDTKQPCVVYHRHGWTYGVLRLNTTVE
>NZ_CP040505.1|WP_005961961.1|616361_617204_+|ComF-family-protein
MPELFAISDIPLLDGGAYEGRRRGLIVSAKHSPSFDPEELLRQSGMTLGRELGRMLKIEVSSALAQSVGSAQGEALAQDAGSAQDASSAQDAGFAQGLGSAQGEAFAQHTGSVRDASSARDTRCSHRKGCTQEERDARLGRHAFTDNAERKEGLALAKGAEIWIIPAPASWKRRLFGRQVTPALACGLAQGLSRETGVQARVVEAVGLRIGTPSQFGVGGAQRRKAKIGSMRARLPLPEPGRIVLVDDVLTTGATMRELARVCAGALACAVFARVNPPSL
>NZ_CP040505.1|WP_005961963.1|614447_616121_+|hypothetical-protein
MKGRPLILVSLLVLALFAAACTSLPKASEPAPFDVSAHTTNPVELSADGPARNSDPMTLVSDFLLACAAGANDDFATARLFLSSDSSQRWHPEQQVLIYDTASRPTLTLSSPAGENTAEVSISAVPVASLDASGVLSRAESSQISQALSLVKESGQWRISAPQDSFIVSKASFLASYERVNLYFPAHSGDALIADPRWLPSRRLASHLIEGLVEGPSNAVADAVSNAIPAGTTVPSAPVEVTDRIAKVHVEGPVPPEGTARDLLVWQITSTLEQSPSITQVEILVSDVELKDAAPLKDPSYLLDTRLGMLSGAIGTLNATKLMSLPLSTPPAEGARHPSMSPVDRGLFAWREGEELVVERIEEDATQVRVSVGGGGAPSIDRFGWTWSAKGGGLAAVSSQGEVLEISGFDPSPLFSRVAVSPDGARALLIGADHSDKSLMIATIVRDRQGKPTSLSSLSVIEGIVSMVEDASWAGTDAFVVLRRKQNEDGTGSVELAEVQLGGFLTASSAPEGAEEISAGSGPGNVCTRTHTGTLHCRSGALWQDMPSGLVDIRYPG
>NZ_CP040505.1|WP_131247261.1|612891_614448_+|sensor-histidine-kinase
MYRRVQASAPARAVRSSLSLRSALAITVAALAVITVFALLVSAQLRTSTFESRRTQILDDAALRFSSAQAVFDQSTAQTPDQVQETARQVVSTINSSAAGAGAVSVVLLRSPDAHSSFRINQITDGSTDLLISERMRTAVRQDGRPQWQSVAIPMVDEEDAPGILVGQVVQLPRAGKHELYIIYSLASDQRQVKMVIRVLFAVALPILIGLPIGAFWLLFSILRPVRRTAEAAKHLAAGDLEARVQVRGEDEMADLSIAFNEMASSLQKKIQEYDELSRLQQRFVSDVSHELRTPLTTIRMADSVIWDHREALPPMAKRSAELLHEQTERMDSLFTDLLEISRHDARSADLAAEVIDLRQVVAKVVAMNAELAERLGVEVRLGGSEERCAVAIDDRRIERVLRNLLVNALEFAEGGPVDLTIGQSDTDVAVRVRDYGVGMSPETAAHVFDRFYRADASRKRTSGGTGLGLSIAAEDVALHGGILEAFGELGHGASFLMTLPKKAGDQVRSEPLKLWED
>NZ_CP040505.1|WP_005961967.1|611981_612662_+|response-regulator-transcription-factor
MNSRILVVDDDLALAEMIGIVLGSEGFDVATCSDGVQALDVFHQENPDLILLDVMLPGMDGIEICTRIRKESDVPIVMLTARTDTADVVAGLEAGADDYVPKPFKHKELVARVRARLRGREEAVDERLVLGDLVIDVSGHTIHRGGEEILLTPLEFDLLVALGRAPWRVFSREELLEKVWGYRHAADTRLVNVHVQRLRSKIERDPDKPEVVITVRGVGYRAGTGA
>NZ_CP040505.1|WP_083879438.1|610688_611834_-|hypothetical-protein
MTTPPPGGFPSYSSAPQPPVTPGNGGGWQGADTPSAQTWTPAGAPESAWTQQGNWGVPPLAKDALRPVIPFRPLGLGELFSGAIEILRFAAAPLFLIPLVPMLILGVFEGFMTYWSFSSLDSFTRQLSYASTDDVPRILSGFFLPLFSGLFISVALMGIVSFLVMGPLYIISSDAVIRRKVDVREAFSRFWPRLIPMIGTAVLFTLMSFAIILLASGIGMLPMIGIIGDVINDVEVTPGRIGVIVLVTLLCTLVAFLSLVFVQIRFLYAYPACTLEGLGPLPALKRSWELTRGVFWRTLGRYLLVSVAIGALTSILSSLFRLFFFGAPDLSLAFSAVLSALISALTMPLLVSFLTLMYTDERMRRENFGVVLEQAYKARLG
>NZ_CP040505.1|WP_040313698.1|609681_610134_+|DUF3499-domain-containing-protein
MILARHCSKPGCQRPAVATLTYDYQDSTVVLGPLATFAEPNAYDLCDHHAEHLTAPKGWQVVRLVTNFEPAPPSGDDLLALVDAVRRAAETQRHAAPEPPTQSSAAIRPAAREAERGPFAPKKEPDTSSPLDPNSSYAKRRARFTVISDD
>NZ_CP040505.1|WP_005961973.1|609037_609454_-|metallopeptidase-family-protein
MPSLSRHPRRDPHGRGPRGPLFFPGTPAWKTRREGFDALATSLIVDLAKKWPAVYTIEFATEDVPPSDPASWEDHSEVLGRVFHADRRRGLKDRIVVYRLPIVLRSHDDVPRTLRKVLVERISRVLAIPPDELEEELH
>NZ_CP040505.1|WP_005961975.1|607398_608799_+|hypothetical-protein
MRSSLPALLALALALGLLGVVGAPGLFPPPEELRSFDAPVMSVKPSSAVLACPPGILDPFEPEEAANPGAIWSTTGLGAGDEPLSQLVVRAPEGAHLELPSGFILAAQSGGELLGLSATGCSAPLTDQWIVLGATQLGSDAVLVLSNPSPLPSKVTISAMGAAGPLAAQAQPLTVPAHSSLPVLPLGWFADEDNLVLRIQAEGAGVAAFAQLSALDGEVPQGTTWTSASTPTNSAMILGVGGEESATLRIAVPGEEPATVRATILGAEEGKPLTEEEITVDAGTVLAIPLNGASAQEAALELESEQAMIVAVERTWKGGAFPTSTIPWRLLSTSLPSKPFTSAKIPGAETLGRLVASQMSMSTRRQTSVHTESGMESWTAKLIIALSQSAGAGSASIELAGQRVELLEGRSTILDLPSADASISANTPIRAALLIEAVTPNGTVHASWPVGTAGLIAREAQVSVEP
>NZ_CP040505.1|WP_083879439.1|604225_607402_+|glycosyltransferase-family-2-protein
MRVLVSSGVVALVVARDRQAHLDSVLLAAASQTLQPNHILLLDCSEEATLKTPGNLDVRSVPTPGAANLGAAIQQLRDSSPELAAARWWWILHDDSIPEPSCLRALWEVADRGRTIGFVGAKQMSMDGTQLLELGIHATRSARRLERISPGEIDQGQYDSTSDVLAAGTAGALIRPEAWDAVGGIDPVLGPFGDGLDFGRRLHLAGYRVVVAPKARIRHARLALFPQGHEKEALRSGGEEDNSDLPLLNAAKSHPAHDPQDASFAARRFAQIYNWAKATPAPLLPLLMLWLAIWSPIRAFGRLSSGASHLAGAELCAWAQALGKTPALFKARRIQARASKVPTKALRGLESSGRELRERRRDLAKALAPEDENVDPLLIESARAHRVKSRRILLLVLLFTALLALGRWWGMNGTLAGGAWRALPASGQGLWESTWSNWVPGGDGRIGVADPLLIVLALFAYPLSLLGITPTSFARYLLFLLAPLAAASAWRFSSRLTSSPALRGAGALAWSVLPALTLSQSQGRLAPALFHVLVPLAASAWLSLAAPRTPLRLEGARGTIDAPENLRSGALARFTVVGAAMVACVPWAILPLMIALIILWRRGSARWGALAAFMPAALLIAPTIFSAFRFFAWRALLSPSGPDAPSLEPVAWQALLGLPTQISRVEVLALSLIPGALLLLAALFAILLSPHERGRGLPLVICCTALALSGGAALSRCDVGVEGTQVLTAWSAPAVSIGSLGLIGLALKAAPSSPAWNSKAMRPFSFLAALASLLFLVSGTAPILERILEHDAQASASTSQRLASPTLSASTDLVSVVSAQAQASTRGGRVLVLDSDAEVSTLSLRLWRGQGPSFLDSTPITRAQDLRAQLHGDAMDPASSELAELALTLVVYPDEATVRSLADHGVDTILIRPESAGLKAMSDALDRAPGLEKVGDTDAGSLWRLHLDSMHTARARIIDGHTWTNLDSGALRVSGDLPEGSKGQIVLAERFDPGWKATLNAQPLEAFARGWSQAFTLEQASGDLLITHESIWALPWKILTLGALALAALLAIPWRRRA
>NZ_CP040505.1|WP_005961956.1|619077_621957_+|preprotein-translocase-subunit-SecA
MSLIDKILRAGEGRTLKKLDQLASQVDALQEDFEKLSDAELQAKTAEFKERLENGETLDDILVEAFATVREAAWRILHMRPFHVQVMGGIALHKGNIAEMKTGEGKTLVATMPAYLRALTGKGVHVVTVNDYLAKYQSDIMARVYSFLGLSVGCVLVGQTPAERRKQYDADITYGTNNEFGFDYLRDNMAQRVEDMVQRGHNYVIVDEVDSILIDEARTPLIISGPASGDVNRWYVEFARIVKDLIRDVDYEVDEKKKTIGVLEPGIDKVEDELGVENLYEAANTPLIGFLNNAIRAKELFHLDKDYIVDGGEVLIVDEHTGRVLPGRRYNDGMHQAIEAKEDVEIKAENQTLATITLQNYFRLYPEGSRAGMTGTAETEAAEFSSTYKIGVIPIPTNRPMIRIDQPDFVFPTEAGKLKAIIEDIAERHAKGQPVLVGTASVEKSELLSRLLKDKHIPHQVLNAKQHAREAAVVAMAGRKGAVTVATNMAGRGTDIMLGGNSEFIAQANLASQGIDPKENPEEYRAQWPLALAEADAAVEAEREEVRELGGLYVLGSERHESRRIDNQLRGRSGRQGDPGESRFYLSMEDDLMRLFNSGMAQRIMASGAYPEDLPLENRIVSRSIQSAQHQVEARNFEIRKNVLKYDDVMTGQRELIYEERRRVLEGEDLEPQMKSFMESLIVGIVNEKTAGLAPREWDLDVLWDTLRGYYPPSVSYEEVEMEHGGRASLVREDLVSELVGDIQAVYEDAEDALNENPLAREQLGDEPMRALERRVVIATVDRLWREHLYEMDYLKEGIGLRAMGQRDPLVEYKDEGAQMFQAMMERIREESVQQVFGFAHQFERAFEQAREQGLFTDGIGAAGLRVKSSPEEDSSSADALDAIAAAEAAAEAKAAKEKTQAAKRARTARAASVMGDFGQKKAQNLRYSSSEAQAGTPSSSGGNREQRRKAARKARKRR
>NZ_CP040505.1|WP_040313506.1|622004_622478_-|hypothetical-protein
MSSLPISATTPLHTPSRRMFRWDLRFDVPPSQQSDTREWLRSRRTDAGLEVDAPEAGAWSAGLARAIIESVLGLRDKRQLERWLIPSLFSALKHLRFDEEVIGVGKRTCQPTTWRFQEVNGAVESAVVVKGAKRSYAVALRLEAFRGRWIATALEIA
>NZ_CP040505.1|WP_131247259.1|622474_623176_-|LysM-peptidoglycan-binding-domain-containing-protein
MLIGSGAARRLVIAGARRSALGLATLGFGMSGAAIATPLPLETDSTASNSESVSWLWHSTDPAEASPSDLGRLTPSPQNNAEQAQAPTQDLQTPDHSPEQFPRTDQTHPQDLTHSTRRSVPSSTTDPDPRSTKLQSAPLSSDLKASTGSAPSGEGPLSHQGSELDSLQPRATLTVEPGDCLWSIAETLLPSGASDSQIDAAWRALYAANASVVGSDPSLIHPGTVLVLPQESK
>NZ_CP040505.1|WP_005961950.1|623607_624174_+|hypothetical-protein
MDLELFLHSLEAEFEARRREEHDELVGELADAERVSVRLADRIVQASGKNITLILRGGQQLSGTILDATRNWLVIRENSGASLVPLGAIEAAWPLKAGCDLGGVRAGLGISSALRGLATQGSPVVIDHDAGRHTGIIREVFADHFDLDISPSTHELDCRDRRSSQRIALVTSGIRRVRSFDVLRQDRG
>NZ_CP040505.1|WP_005961949.1|624604_624814_-|helix-turn-helix-domain-containing-protein
MSPRFLTLADVAETLNLTMSAARSLVTSGELPAIQVGGKRAWRVEEAVLEHYIEEQYAATRERIAEHSL
>NZ_CP040505.1|WP_138588749.1|624964_625591_+|flagellar-biosynthesis-protein-FlgA
MRNRRRTLTVTGPVPLWRDPRLLGGLALIAVSILACVWLVAQARAGVSVYRTTRPIAIGESLDATNTALADVRIDAEAYLEEGELVPGTLAKRSMGEGELVARASTTNEAEQSLRRFVVTVADGLPSSTKPGDTVELWALPSAHPSRGTEEQSHLLASATLVKIIDDEESLVRSGLRIEVLVDAGVVSTVLDATSGQESLAAVPVGAS
>NZ_CP040505.1|WP_005961945.1|625587_627159_+|MinD/ParA-family-protein
MSARQGVVVLVNPEEEGEIVRAIDQTSGLKVVRRCADLAEARAAIRAKVAALVVLDMSDPDLDAITIDELHRFGAGVILVADPEDTAPARSLGADGLCARGLPSMVVDSLLALLRSEDAEEGVSALPLPPPPPDSESQGDELHLLEQALLNHEAGRFSQAQDRGGKKGHVIAVWGTSGAPGRSTIALGLAHALAKKGEVLIIDADTKDPSIAHMSGVPVDASGLAALARRVVRGGLDARAVRESVVKCAPGLFLLTGLASPHRWREAGPAAIVEIIETARCEFEWILVDVPAISPDTMCEEVSHQGSQDDSAAAVLANADEIVCVARADVIGVNRLSFAVEWLADQLPEQHARIVVNRVAPCALGSRPHNALDAALSGIVPGARVHIVPEDEAVATGLLEGRSVVVNTPKSPAAKAIEALAEQIAPSKPSSKPKPPQDSLVGSYPSGRRIEARGRGGSAEEASIPGRRGTQGIMPEAEGSGWSTPGERDAQSDAVPREAESMNRPSRPWRGFLSRRKGPNVEH
>NZ_CP040505.1|WP_005961943.1|627163_627628_+|hypothetical-protein
MRVYLPLLGSELLGDSLSSRRGFTVIAPNAADSETIEVLEDDAQTEAALVSLMELREREGEPMVRLIAAADVADTALEGEGEGEGVVETAEIAVSWSEVVAILADSGEAAPAVLKVVEASEQDEADEAVAALWEHALEWFDVSERESLARALGL
>NZ_CP040505.1|WP_005961941.1|627932_631088_-|SMC-family-ATPase
MRLHRLAFTAIGPFADTEVIDFTVFDDAGLFLLAGPTGAGKSMLIDAIVFALYGDVARQSDASTQRLRSDYASPRVHSEVDLIFETPAGIYRVTRTPKYVPKGNKSARNSQASLVRVIEDPSCPEGYRTIEGIERGARQISSEIKRIVGLTKEQFLQTVVLPQGKFAEFLTAKSEDRESILRDIFETGVYLDFQKRLVSEANSGKARLLTAEEECLRAFGALERLELKDIEVPAPLGTPSASLEAPSMSPEAPSLSPEAPSPEPEDHASLAPMDPLADEGWARERAEHIVSTAEKLLDQARASQPPLIEAAEKAAQALAQAKEDRALVEERTRLLEEKTALEAQSPAIAATRQKIEQARRVAAILPSLEQRDQALAARKAAHTQALHSLTACSAAQILTFDEASLSEELARSFLPQIENHKELRTEERARIRELLALEAGLQDRRHALEARVDKRAALEATIAHLDEQLAESPQRIAMGEEALEAMASEINGLEGVEGALERVKARMSAAQDALRLIEEMKAASQALGEAKAAARDAQITAMIAHEQWLNQTASALAQDLEEGQACPVCGSLEHPSPMPALEGEDLSRDAITLLDRAKTQADERFTAASSAHLALVEAVKEANGRAGGDAASISLELEEAQKAVERLFAVKKLKAELEADLKKAREKEAAVKEQRLAARVELVERRVEITSMRESLEADERRCAEAAGKAESLGDLDDALTRALTLLKEASSGLSEFLHCSQLAASAHERALSALDEGGFEDTPEAHDEIRSLHASEKQITALEAEVSAYDSTLGAVTQLLASSRLSRAEGLVPADEEPLREALNEAKKRQDEAQRRLGSLEQALKQIQSAEVDFSHSLSQLHEVRDSFGPLKRLAGIADASSKENLLQTPLSAWVLVSRLDEVLAAANPRLLSISSGRYELVSTPDDGTRSRRSGLGLAIVDHDTEETRSPRTLSGGESFYTSLSLALGLADVVTAEAGGIELRTMFIDEGFGSLDSATLELVMAELHELRDSGRVVGVISHVDEMARQIPDRITVTPSGRGGSRLSVTG
>NZ_CP040505.1|WP_005961939.1|631084_632293_-|exonuclease-SbcCD-subunit-D
MRILHTSDWHIGRTLHGQDLSDSVDAFFSWLLQLVEARSIELVLISGDLFDRAVPPLNALARTSKMLEELSAKARVIITSGNHDSATRLGLFSPMLDQRLVVTTGVDTIGTAVEHGGPGGCLIYPIPYLEPDLVRQELSDLAPLDSGLPAPLPRSHEAVVAAALRRVRADLELRREAGDQRPAIIMLHEFLTGGAPSDSERVIEVGGVGCVPAAVLDTLGGEEQIDLGVVYAALGHLHRPQSISGARMPLRYSGSPIAYSFSEAGVDKSVVLLDVHGDSCEIELVPIPVHRPLALLRGTMEDLLADPDPALVNAYCSISVTDDARPQQMVSRIREVYPHALVILHESAIRSSIPSGAPGVRSRAPQEVTLDFFAAVGGRELDAREAQIVSDVWTDMRKEGLQ

Crispr_ID: NZ_CP040505_20

• CRISPR_ID: NZ_CP040505_20
• CRISPR_location: 633723-633822
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP040505_20

Consensus_repeat	Method
AAGCCCCGAGAAGTGAACGACCCAAACCTTAGGACG	CRISPRCasFinder

spacers of NZ_CP040505_20

>20.1|633759|28|NZ_CP040505|CRISPRCasFinder
CAAAAACACCCCGCCCCCGAGAAACGAC

CRISPR arrays and Neighbor proteins around NZ_CP040505_20

CRISPR arrays

The CRISPR arrays of NZ_CP040505_20

>merge|NZ_CP040505|20|633723-633822|CRISPRCasFinder
AAGCCCCGAGAAGTGAACGACCCAAACCTTAGGACGCAAAAACACCCCGCCCCCGAGAAACGACAAGCCCCGAGAAGTGAACGGCCCAAACCTTAGGACG

>NZ_CP040505|20|19|633723-633822|CRISPRCasFinder
AAGCCCCGAGAAGTGAACGACCCAAACCTTAGGACG	CAAAAACACCCCGCCCCCGAGAAACGAC
AAGCCCCGAGAAGTGAACGGCCCAAACCTTAGGACG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005961925.1|638589_639282_-|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|225107
NZ_CP040505.1|WP_051057789.1|639278_640637_-|two-component-sensor-histidine-kinase	unknown	unknown	gnl|CDD|226951
NZ_CP040505.1|WP_005961941.1|627932_631088_-|SMC-family-ATPase	unknown	unknown	gnl|CDD|223496
NZ_CP040505.1|WP_040313506.1|622004_622478_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005961935.1|633843_634899_-|ribosome-small-subunit-dependent-GTPase-A	unknown	unknown	gnl|CDD|206747
NZ_CP040505.1|WP_040313503.1|636339_636855_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005961943.1|627163_627628_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005961929.1|637148_637799_+|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl|CDD|131992
NZ_CP040505.1|WP_131247259.1|622474_623176_-|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl|CDD|212030
NZ_CP040505.1|WP_131247255.1|641654_645482_-|multifunctional-oxoglutarate-decarboxylase/oxoglutarate-dehydrogenase-thiamine-pyrophosphate-binding-subunit/dihydrolipoyllysine-residue-succinyltransferase-subunit	unknown	unknown	gnl|CDD|237030
NZ_CP040505.1|WP_005961937.1|632670_633489_-|histidinol-phosphatase	unknown	unknown	gnl|CDD|273949
NZ_CP040505.1|WP_131247257.1|638283_638358_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005961945.1|625587_627159_+|MinD/ParA-family-protein	unknown	unknown	gnl|CDD|349765
NZ_CP040505.1|WP_051057830.1|634895_636182_-|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl|CDD|235037
NZ_CP040505.1|WP_138588749.1|624964_625591_+|flagellar-biosynthesis-protein-FlgA	unknown	unknown	unknown
NZ_CP040505.1|WP_005961950.1|623607_624174_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005961949.1|624604_624814_-|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl|CDD|378935
NZ_CP040505.1|WP_005961922.1|641038_641638_-|lipase	unknown	unknown	gnl|CDD|238873
NZ_CP040505.1|WP_005961939.1|631084_632293_-|exonuclease-SbcCD-subunit-D	unknown	unknown	gnl|CDD|223497
NZ_CP040505.1|WP_138588751.1|637791_638151_+|anti-sigma-factor	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005961925.1|638589_639282_-|response-regulator-transcription-factor	gnl|CDD|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.47686e-64
NZ_CP040505.1|WP_005961941.1|627932_631088_-|SMC-family-ATPase	gnl|CDD|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	2.27944e-62
NZ_CP040505.1|WP_005961935.1|633843_634899_-|ribosome-small-subunit-dependent-GTPase-A	gnl|CDD|206747	cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases. YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain.	1.64661e-83
NZ_CP040505.1|WP_051057789.1|639278_640637_-|two-component-sensor-histidine-kinase	gnl|CDD|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.40068e-29
NZ_CP040505.1|WP_005961929.1|637148_637799_+|sigma-70-family-RNA-polymerase-sigma-factor	gnl|CDD|131992	TIGR02947, putative_RNA_polymerase_sigma_factor, RNA polymerase sigma-70 factor, TIGR02947 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and (with the exception of a paralog in Thermobifida fusca YX) one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria and each gene examined is followed by an anti-sigma factor in an apparent operon.	1.40597e-78
NZ_CP040505.1|WP_131247259.1|622474_623176_-|LysM-peptidoglycan-binding-domain-containing-protein	gnl|CDD|212030	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.	3.48016e-06
NZ_CP040505.1|WP_131247255.1|641654_645482_-|multifunctional-oxoglutarate-decarboxylase/oxoglutarate-dehydrogenase-thiamine-pyrophosphate-binding-subunit/dihydrolipoyllysine-residue-succinyltransferase-subunit	gnl|CDD|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0
NZ_CP040505.1|WP_005961937.1|632670_633489_-|histidinol-phosphatase	gnl|CDD|273949	TIGR02067, his_9_HisN, histidinol-phosphatase, inositol monophosphatase family. This subfamily belongs to the inositol monophosphatase family (pfam00459). The members of this family consist of no more than one per species and are found only in species in which histidine is synthesized de novo but no histidinol phosphatase can be found in either of the two described families (TIGR01261, TIGR01856). In at least one species, the member of this family is found near known histidine biosynthesis genes. The role as histidinol-phosphatase wsa first proven in Corynebacterium glutamicum. [Amino acid biosynthesis, Histidine family].	4.83238e-90
NZ_CP040505.1|WP_005961945.1|625587_627159_+|MinD/ParA-family-protein	gnl|CDD|349765	cd03111, CpaE-like, pilus assembly ATPase CpaE. This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.	1.4745e-17
NZ_CP040505.1|WP_051057830.1|634895_636182_-|3-phosphoshikimate-1-carboxyvinyltransferase	gnl|CDD|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	1.28786e-141
NZ_CP040505.1|WP_005961922.1|641038_641638_-|lipase	gnl|CDD|238873	cd01835, SGNH_hydrolase_like_3, SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	7.5878e-55
NZ_CP040505.1|WP_005961949.1|624604_624814_-|helix-turn-helix-domain-containing-protein	gnl|CDD|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	4.28396e-08
NZ_CP040505.1|WP_005961939.1|631084_632293_-|exonuclease-SbcCD-subunit-D	gnl|CDD|223497	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair].	2.29549e-45

Protein sequences

>NZ_CP040505.1|WP_005961937.1|632670_633489_-|histidinol-phosphatase
MTTDARYNDDLRLAHVLADQADAITLARFGAQDLVVDSKPDLTPVTDADRAVEDMIRSQLAHTRSRDSVVGEERGTSGHASRQWIIDPIDGTKNFVRGVPVWATLIGLVEDGEVVMGVVSAPALKRRWWAAKGQGSFAGTSLFKGRKLSVSSVAELSDASLSYSSLDSWLHAERGGEFLRMQSQFWRTRAYGDFWSYMLVAEGAVDAACEPELELYDMAALVPIVTEAGGRFTSLRAEEGPWGGNALATNGLLHERLLRILDWPGFAASDEE
>NZ_CP040505.1|WP_005961939.1|631084_632293_-|exonuclease-SbcCD-subunit-D
MRILHTSDWHIGRTLHGQDLSDSVDAFFSWLLQLVEARSIELVLISGDLFDRAVPPLNALARTSKMLEELSAKARVIITSGNHDSATRLGLFSPMLDQRLVVTTGVDTIGTAVEHGGPGGCLIYPIPYLEPDLVRQELSDLAPLDSGLPAPLPRSHEAVVAAALRRVRADLELRREAGDQRPAIIMLHEFLTGGAPSDSERVIEVGGVGCVPAAVLDTLGGEEQIDLGVVYAALGHLHRPQSISGARMPLRYSGSPIAYSFSEAGVDKSVVLLDVHGDSCEIELVPIPVHRPLALLRGTMEDLLADPDPALVNAYCSISVTDDARPQQMVSRIREVYPHALVILHESAIRSSIPSGAPGVRSRAPQEVTLDFFAAVGGRELDAREAQIVSDVWTDMRKEGLQ
>NZ_CP040505.1|WP_005961941.1|627932_631088_-|SMC-family-ATPase
MRLHRLAFTAIGPFADTEVIDFTVFDDAGLFLLAGPTGAGKSMLIDAIVFALYGDVARQSDASTQRLRSDYASPRVHSEVDLIFETPAGIYRVTRTPKYVPKGNKSARNSQASLVRVIEDPSCPEGYRTIEGIERGARQISSEIKRIVGLTKEQFLQTVVLPQGKFAEFLTAKSEDRESILRDIFETGVYLDFQKRLVSEANSGKARLLTAEEECLRAFGALERLELKDIEVPAPLGTPSASLEAPSMSPEAPSLSPEAPSPEPEDHASLAPMDPLADEGWARERAEHIVSTAEKLLDQARASQPPLIEAAEKAAQALAQAKEDRALVEERTRLLEEKTALEAQSPAIAATRQKIEQARRVAAILPSLEQRDQALAARKAAHTQALHSLTACSAAQILTFDEASLSEELARSFLPQIENHKELRTEERARIRELLALEAGLQDRRHALEARVDKRAALEATIAHLDEQLAESPQRIAMGEEALEAMASEINGLEGVEGALERVKARMSAAQDALRLIEEMKAASQALGEAKAAARDAQITAMIAHEQWLNQTASALAQDLEEGQACPVCGSLEHPSPMPALEGEDLSRDAITLLDRAKTQADERFTAASSAHLALVEAVKEANGRAGGDAASISLELEEAQKAVERLFAVKKLKAELEADLKKAREKEAAVKEQRLAARVELVERRVEITSMRESLEADERRCAEAAGKAESLGDLDDALTRALTLLKEASSGLSEFLHCSQLAASAHERALSALDEGGFEDTPEAHDEIRSLHASEKQITALEAEVSAYDSTLGAVTQLLASSRLSRAEGLVPADEEPLREALNEAKKRQDEAQRRLGSLEQALKQIQSAEVDFSHSLSQLHEVRDSFGPLKRLAGIADASSKENLLQTPLSAWVLVSRLDEVLAAANPRLLSISSGRYELVSTPDDGTRSRRSGLGLAIVDHDTEETRSPRTLSGGESFYTSLSLALGLADVVTAEAGGIELRTMFIDEGFGSLDSATLELVMAELHELRDSGRVVGVISHVDEMARQIPDRITVTPSGRGGSRLSVTG
>NZ_CP040505.1|WP_005961943.1|627163_627628_+|hypothetical-protein
MRVYLPLLGSELLGDSLSSRRGFTVIAPNAADSETIEVLEDDAQTEAALVSLMELREREGEPMVRLIAAADVADTALEGEGEGEGVVETAEIAVSWSEVVAILADSGEAAPAVLKVVEASEQDEADEAVAALWEHALEWFDVSERESLARALGL
>NZ_CP040505.1|WP_005961945.1|625587_627159_+|MinD/ParA-family-protein
MSARQGVVVLVNPEEEGEIVRAIDQTSGLKVVRRCADLAEARAAIRAKVAALVVLDMSDPDLDAITIDELHRFGAGVILVADPEDTAPARSLGADGLCARGLPSMVVDSLLALLRSEDAEEGVSALPLPPPPPDSESQGDELHLLEQALLNHEAGRFSQAQDRGGKKGHVIAVWGTSGAPGRSTIALGLAHALAKKGEVLIIDADTKDPSIAHMSGVPVDASGLAALARRVVRGGLDARAVRESVVKCAPGLFLLTGLASPHRWREAGPAAIVEIIETARCEFEWILVDVPAISPDTMCEEVSHQGSQDDSAAAVLANADEIVCVARADVIGVNRLSFAVEWLADQLPEQHARIVVNRVAPCALGSRPHNALDAALSGIVPGARVHIVPEDEAVATGLLEGRSVVVNTPKSPAAKAIEALAEQIAPSKPSSKPKPPQDSLVGSYPSGRRIEARGRGGSAEEASIPGRRGTQGIMPEAEGSGWSTPGERDAQSDAVPREAESMNRPSRPWRGFLSRRKGPNVEH
>NZ_CP040505.1|WP_138588749.1|624964_625591_+|flagellar-biosynthesis-protein-FlgA
MRNRRRTLTVTGPVPLWRDPRLLGGLALIAVSILACVWLVAQARAGVSVYRTTRPIAIGESLDATNTALADVRIDAEAYLEEGELVPGTLAKRSMGEGELVARASTTNEAEQSLRRFVVTVADGLPSSTKPGDTVELWALPSAHPSRGTEEQSHLLASATLVKIIDDEESLVRSGLRIEVLVDAGVVSTVLDATSGQESLAAVPVGAS
>NZ_CP040505.1|WP_005961949.1|624604_624814_-|helix-turn-helix-domain-containing-protein
MSPRFLTLADVAETLNLTMSAARSLVTSGELPAIQVGGKRAWRVEEAVLEHYIEEQYAATRERIAEHSL
>NZ_CP040505.1|WP_005961950.1|623607_624174_+|hypothetical-protein
MDLELFLHSLEAEFEARRREEHDELVGELADAERVSVRLADRIVQASGKNITLILRGGQQLSGTILDATRNWLVIRENSGASLVPLGAIEAAWPLKAGCDLGGVRAGLGISSALRGLATQGSPVVIDHDAGRHTGIIREVFADHFDLDISPSTHELDCRDRRSSQRIALVTSGIRRVRSFDVLRQDRG
>NZ_CP040505.1|WP_131247259.1|622474_623176_-|LysM-peptidoglycan-binding-domain-containing-protein
MLIGSGAARRLVIAGARRSALGLATLGFGMSGAAIATPLPLETDSTASNSESVSWLWHSTDPAEASPSDLGRLTPSPQNNAEQAQAPTQDLQTPDHSPEQFPRTDQTHPQDLTHSTRRSVPSSTTDPDPRSTKLQSAPLSSDLKASTGSAPSGEGPLSHQGSELDSLQPRATLTVEPGDCLWSIAETLLPSGASDSQIDAAWRALYAANASVVGSDPSLIHPGTVLVLPQESK
>NZ_CP040505.1|WP_040313506.1|622004_622478_-|hypothetical-protein
MSSLPISATTPLHTPSRRMFRWDLRFDVPPSQQSDTREWLRSRRTDAGLEVDAPEAGAWSAGLARAIIESVLGLRDKRQLERWLIPSLFSALKHLRFDEEVIGVGKRTCQPTTWRFQEVNGAVESAVVVKGAKRSYAVALRLEAFRGRWIATALEIA
>NZ_CP040505.1|WP_005961935.1|633843_634899_-|ribosome-small-subunit-dependent-GTPase-A
MRRDTGTDDPRVRVRAGKSSRPRTKVRPDRSKAPIGQVIAIDRGRYRVRLKDQGIEVQAVRAKELKRGSVIMGDRVRVTGDLSGRVDTLARIVAVEERSTVLRRSLEDAPDLKGEKAIVANAELMCIVVALADPPPRTGMIDRCLVAAYEARMRPILCLTKTDLARPDELLEAYRPFDVTTIVTSADNLDSVDELRRELEGRFSVLVGHSGVGKSTLINALVPSANRAVGHVNEVTGRGRHTSTSSEAFELAGGGWIVDTPGVRSFGVGHVSVEDILSVFPEVGEATGYCLPLCSHSREEPSCAIDAWAKGHSPFEPVEEEVSAKRKSMAESARRLLASVATAEAVSKAAR
>NZ_CP040505.1|WP_051057830.1|634895_636182_-|3-phosphoshikimate-1-carboxyvinyltransferase
MNACVRLPGSKSQSARFLYLAAVASGPSRLRGVLDSRDTRLLVSALETLGAHFESEEEGSILVHPLDLHACLGEARVAIECGLAGTVMRFLPPLAALFHTPVRFDGDPAARRRPLAPLLDTLSHLGAHIEFEGEPGFLPFTVTGPLRAPADGVLRVDASASSQFLSAMLLLAPLLGVPLIVEAPGRVVSLPHVEMTCEALRRCGCVVEQINEDGGEPLSWRVLPGAPRPQELSVEPDLSNAGPFLAAAMICGGRVRVQDWPERTKQAGDAWRQLLTDMGGLVEREGSDLVVTGPDGGRIRGIDIDMSQIGELAPTLAALAACASSPSSIRGIAHLRGHETDRLAALAHELRGAGCGVEELADGLEIIPAPLIPGLRRAYGDHRMATFAAIIGLKAPGTSLDDIASTSKTIPGFARMWEELLGTSGERS
>NZ_CP040505.1|WP_040313503.1|636339_636855_-|hypothetical-protein
MNLLRLVARPLLAAPFLVDGFSALRSPSEHVDRAHAVVPLVEKLTPGLTIDDEDLRVTTRVLGVVMIGAGTAFALGKAPRTSAAILAGLAAPMAFVNAPVWDAESKEERFETMKELNKRLALVGALAIASMDRVGRPSAAWRRSYSRQHRRALLEARAAGRQSLTQSHTHS
>NZ_CP040505.1|WP_005961929.1|637148_637799_+|sigma-70-family-RNA-polymerase-sigma-factor
MTSLPTTTASADTSAQHSEHSAPEADSSSAELDARFAAEALPLASRLFGAALGMTRNRADAEDLVQETYLKAYSRFHQYEPGTNITAWLYRILTNTYISHYRKAKRSPARASTEGVEDWQLAEAASHDPIGLKSAEVEALAQMPSEAVKEALDALSEEQRMVVVLADVDSLSYKEIAATLGIPIGTVMSRLHRGRAALRRSLAHVAAEYGIGGHNE
>NZ_CP040505.1|WP_138588751.1|637791_638151_+|anti-sigma-factor
MSERMIDSMDEDGRALHQVPDAPERSCEEVEAVLFALIDCEECEQLRVSIDSGELEGPDAAERLVLLAPATGCEHCADALAAERHLRVYLRSCFESDAPDGLETRIATALHLSINSFTR
>NZ_CP040505.1|WP_131247257.1|638283_638358_+|hypothetical-protein
MSKRGRKRRDRRKGGANHGKRPNA
>NZ_CP040505.1|WP_005961925.1|638589_639282_-|response-regulator-transcription-factor
MIRIGMADDEPLFLAGLAMLLDAQEDMEVSWRAGNGKEALDLAARSSVDVLLLDVQMPLCDGLEATRRFVSRGLSGRIVILTTFDTEGYVLGAIEAGASGFLLKNTPPQSLIDAIRTLASGDSVISPGPTRRLIRAMRETTAPSRTSRERAPSEPVSAELTEREVEVLALIAQGLTNQEMCDRLWVSMPTIKTHVSHLLVKTGARDRVQLVLYALRTGVADLDSVLAQGH
>NZ_CP040505.1|WP_051057789.1|639278_640637_-|two-component-sensor-histidine-kinase
MPQPRLPSFRGADLVSAGLLGLVTATNLHAFTPPLSSVGEALGPEAELPLFGVFTLVCCAALAVRTRHSLLSVILIEGMLALHLLVFNSLSVLSIVLCLVAAETIGSRIARPWSWGLLAVLALGSAATALRVSPLFNEEIALFTRLFFVLIAAWSLIGVAYLWGLNGRRRRDRVEQAIARAEELAAHAEDRRRLAVVEERQRIARDVHDLLGHSLAVIGMQAEGARAMLAADPTRAEEALATIGELSRVGIDDLRRLVDVLREEESEQVDSSVGIEGPGVPLLAGECSSGRAPLAPETRTGLEGLIGLVERVRAAQLDIRLTLEADSSVPASVDAACSGIVHEALSNAMRHGAGPVLVDMKVRAEGVDVSVCSAQKVCAPQDGSHAPQDGSHAPQDVSKAGDGPRVGTGLTTMRERAEALGGTFHAAPRSDGRWLVRAHLPAEGPGSGKEKK
>NZ_CP040505.1|WP_005961922.1|641038_641638_-|lipase
MRLCVIGDELVAGTGDPRGLGWVGRVLARSKFSEPPTLMTLASPGETTKDLCARWEGEVMSRLSSGGPRGLLVHIGANDILAGLSSARSRLNLANITDRATALGIPCFVIGPAPLAGVDHHSVKELSRSCAEVCQRRGLPYVDLATPLATHDQWFEDMAASRAQSASGLTLPGQSGYALIAWLILHSGWYEWTGAEPQD
>NZ_CP040505.1|WP_131247255.1|641654_645482_-|multifunctional-oxoglutarate-decarboxylase/oxoglutarate-dehydrogenase-thiamine-pyrophosphate-binding-subunit/dihydrolipoyllysine-residue-succinyltransferase-subunit
MRVATSEQEQPGAENWYIQRMREAYLADPASLDESWRRYFSTQSAPPQLRAAKPPLSPLQREQETAQAPTNALILAEEAFAQDTAQTGTNEESVTRSDLPPAPPSMIAEASSPYTRQLRTHSASMRSSNTLNEDESALLKGVARATARNMDDSLSIPTATSQRQIPAKLLIENRALLNAHLARTTGGKVSFTHLIGYALVEALCEMPELNVRYEMTGTKPTIHRHAHVGLGLAIDVAMKNGERSLMVPVIHDADTLTFMEFVAAYQDIVQRARTGELTTADFAGATITLTNPGTLGTTTSVPRLMNGQGAIIGVGATDYPAQYRGVSARRLASMAIGKTMYLSSTYDHRIIQGAASGRFLGLIDKKLSGVEGFYERVFTSLHVPVSPYAWEADVEYDPEREKGKPARIVELIHAFRSRGHLAADTDPLAYRVRHHPDLDMTRYGLSVWDLDRPFPTGGFGGVDQMLLRDILTRLHDTYSRSLGIEYMHIQDPEQRAWVQERIEGPYEAPSAAEQRHILQTLIRAEAFEEFLQTKFVGQKRFSLEGGESLIPLLDEILARSARNGLHEVAIGMAHRGRLNVLANIAGKSYGQIFSEFEGHQDPSTGQGSGDVKYHLGTWGVYSLDDGVATKVYMGANPSHLEAADGVLEGIVRAKQEELGDPELPIIPVLVHGDAAFIGQGVVQETLNLSQLSGYKTGGTIHVIVNNQIGFTTGPTSGRSTRYPTDLAKGLQIPILHVNGDDPEAVVRAAALAWEYRTAFHKDVLIDMVCYRRRGHNEGDDPSMTQPVMYELINRIPSTRAVYTRNLVGRGQLTEAEAQASIAEYEEELSRILEETREKRLSTTAEGAEASADKAPGTAPAGFGSPAGEEAVPNWVAHESQLPGRGMMIGWQSCASEDLIRRIGDAHTAFPSGFTPHPKLAQLCERRRDMAYGTRPIDWGFAELLAFGTLLMEGTPIRLSGEDVRRATFVQRHAVLHDFLDGREFTPLQFLTADQARFDVYDSPLSEYAVLAFDYGYSVERPDALTIWEAQFGDFANGAQTVIDEFICSAEQKWGQRSSLVMLLPHGYEGQGPDHSSARIERYLQLAAQDNMWIVQPSTPANHFHMLRRQAYQRPRRPLIAFTPKQLLRLSAATSSIEEFTSGSFRPVIDEMDLSIDPSAVTRVLLCSGRVYYDLLREREARSDRSTAIVRLEQLYPLPEAEIREVLDAYPSAQVSWVQDEPRNQGAWPFLALNMFMEWSKPVRLVSRPESATTAAGRASLHKAQNADLIARAFDR

Crispr_ID: NZ_CP040505_21

• CRISPR_ID: NZ_CP040505_21
• CRISPR_location: 653045-653136
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP040505_21

Consensus_repeat	Method
AGTAGCGAGGGGCAATGGTGAGCTGAGGATT	CRISPRCasFinder

spacers of NZ_CP040505_21

>21.1|653076|30|NZ_CP040505|CRISPRCasFinder
CACAATGACCAGCCACGTTGAGCGGTGGTG

CRISPR arrays and Neighbor proteins around NZ_CP040505_21

CRISPR arrays

The CRISPR arrays of NZ_CP040505_21

>merge|NZ_CP040505|21|653045-653136|CRISPRCasFinder
AGTAGCGAGGGGCAATGGTGAGCTGAGGATTCACAATGACCAGCCACGTTGAGCGGTGGTGAGTAGCGAGGGGCAATGGTGAGCTGGGGATT

>NZ_CP040505|21|20|653045-653136|CRISPRCasFinder
AGTAGCGAGGGGCAATGGTGAGCTGAGGATT	CACAATGACCAGCCACGTTGAGCGGTGGTG
AGTAGCGAGGGGCAATGGTGAGCTGGGGATT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005961925.1|638589_639282_-|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|225107
NZ_CP040505.1|WP_005961884.1|663010_663823_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005961911.1|649406_650222_+|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl|CDD|176504
NZ_CP040505.1|WP_005961902.1|654185_654848_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_051057788.1|648708_649407_+|M23-family-metallopeptidase	unknown	unknown	gnl|CDD|223810
NZ_CP040505.1|WP_005961894.1|657838_659170_-|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|224567
NZ_CP040505.1|WP_005961905.1|653656_654112_+|ribose-5-phosphate-isomerase	unknown	unknown	gnl|CDD|235509
NZ_CP040505.1|WP_005961896.1|656897_657743_-|sugar-ABC-transporter-permease	unknown	unknown	gnl|CDD|224096
NZ_CP040505.1|WP_040313500.1|654858_655917_-|LacI-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224525
NZ_CP040505.1|WP_040313501.1|651340_652753_-|sodium:proton-antiporter	unknown	unknown	gnl|CDD|379910
NZ_CP040505.1|WP_131247255.1|641654_645482_-|multifunctional-oxoglutarate-decarboxylase/oxoglutarate-dehydrogenase-thiamine-pyrophosphate-binding-subunit/dihydrolipoyllysine-residue-succinyltransferase-subunit	unknown	unknown	gnl|CDD|237030
NZ_CP040505.1|WP_051057789.1|639278_640637_-|two-component-sensor-histidine-kinase	unknown	unknown	gnl|CDD|226951
NZ_CP040505.1|WP_131247257.1|638283_638358_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_040313686.1|645889_647203_+|HlyC/CorC-family-transporter	unknown	unknown	gnl|CDD|224173
NZ_CP040505.1|WP_005961922.1|641038_641638_-|lipase	unknown	unknown	gnl|CDD|238873
NZ_CP040505.1|WP_005961888.1|661214_662642_+|diaminopimelate-decarboxylase	unknown	unknown	gnl|CDD|143501
NZ_CP040505.1|WP_005961898.1|656022_656901_-|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl|CDD|223472
NZ_CP040505.1|WP_005961890.1|659532_661212_+|arginine--tRNA-ligase	unknown	unknown	gnl|CDD|234964
NZ_CP040505.1|WP_005961882.1|664346_666929_-|ATP-dependent-helicase-HrpB	unknown	unknown	gnl|CDD|273901
NZ_CP040505.1|WP_005961917.1|647199_648267_+|HlyC/CorC-family-transporter	unknown	unknown	gnl|CDD|224173

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005961925.1|638589_639282_-|response-regulator-transcription-factor	gnl|CDD|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.47686e-64
NZ_CP040505.1|WP_005961911.1|649406_650222_+|glycerophosphodiester-phosphodiesterase	gnl|CDD|176504	cd08561, GDPD_cytoplasmic_ScUgpQ2_like, Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.	5.20956e-76
NZ_CP040505.1|WP_005961890.1|659532_661212_+|arginine--tRNA-ligase	gnl|CDD|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0
NZ_CP040505.1|WP_051057788.1|648708_649407_+|M23-family-metallopeptidase	gnl|CDD|223810	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane].	3.22026e-36
NZ_CP040505.1|WP_005961894.1|657838_659170_-|ABC-transporter-substrate-binding-protein	gnl|CDD|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	4.52565e-34
NZ_CP040505.1|WP_005961905.1|653656_654112_+|ribose-5-phosphate-isomerase	gnl|CDD|235509	PRK05571, PRK05571, ribose-5-phosphate isomerase B; Provisional.	1.37191e-83
NZ_CP040505.1|WP_005961896.1|656897_657743_-|sugar-ABC-transporter-permease	gnl|CDD|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.69748e-53
NZ_CP040505.1|WP_040313500.1|654858_655917_-|LacI-family-transcriptional-regulator	gnl|CDD|224525	COG1609, PurR, Transcriptional regulators [Transcription].	3.02005e-99
NZ_CP040505.1|WP_131247255.1|641654_645482_-|multifunctional-oxoglutarate-decarboxylase/oxoglutarate-dehydrogenase-thiamine-pyrophosphate-binding-subunit/dihydrolipoyllysine-residue-succinyltransferase-subunit	gnl|CDD|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0
NZ_CP040505.1|WP_051057789.1|639278_640637_-|two-component-sensor-histidine-kinase	gnl|CDD|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.40068e-29
NZ_CP040505.1|WP_040313501.1|651340_652753_-|sodium:proton-antiporter	gnl|CDD|379910	pfam16980, CitMHS_2, Putative citrate transport. CitMHS is a family of putative citrate transporters, belonging to the Na+/H+ antiporter NhaD-like permease superfamily.	5.32436e-149
NZ_CP040505.1|WP_040313686.1|645889_647203_+|HlyC/CorC-family-transporter	gnl|CDD|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	1.36223e-109
NZ_CP040505.1|WP_005961922.1|641038_641638_-|lipase	gnl|CDD|238873	cd01835, SGNH_hydrolase_like_3, SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	7.5878e-55
NZ_CP040505.1|WP_005961888.1|661214_662642_+|diaminopimelate-decarboxylase	gnl|CDD|143501	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	2.62811e-144
NZ_CP040505.1|WP_005961898.1|656022_656901_-|carbohydrate-ABC-transporter-permease	gnl|CDD|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	5.63047e-68
NZ_CP040505.1|WP_005961882.1|664346_666929_-|ATP-dependent-helicase-HrpB	gnl|CDD|273901	TIGR01970, ATP-dependent_RNA_helicase_HrpB, ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP040505.1|WP_005961917.1|647199_648267_+|HlyC/CorC-family-transporter	gnl|CDD|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	1.83015e-73

Protein sequences

>NZ_CP040505.1|WP_040313501.1|651340_652753_-|sodium:proton-antiporter
MTFPWWSLLPFVAMLASIAVLPILPATAHWWEKRSSQLLVALVLGIPTSVYMWMKAGNGALVATGVEYVQFIALLLSLFVISGGIHLEGDIQATPRNNTIFLAIGGLLASFIGTTGAAMLLIRPLLATNKEREHRVHTVLFTIFIVANCGGLLTPLGDPPLFLGFLHGVPFTWTLGLWKEWLFVLVLLLGIYYSIDSIRYATESKAAIERDTTEVTPLKLRGTFNLLFFAIVIVSVAFIPSWDGELLATGEAHGAQLVPWRELVMLTAAAASYFFGDKTVRFEENAFTWAPIAEVATLFIGIFSTMAPALRYLEQVAPSLPLNRMTFFLFSGSLSSVLDNAPTYMTFFEMAKALGGDGVLIAGVPEYYLVPISLGAVLCGAITYIGNGPNFMVKSVADADGVAMPSFGAYVVKAFEYLVPTLTAMVLLFLAESLLAHLLGFVIVALLIIFAVLRILRARKILAEGETSTS
>NZ_CP040505.1|WP_005961911.1|649406_650222_+|glycerophosphodiester-phosphodiesterase
MIPMSSRLGPIILAHRGGDEVASENSYEAFDNARTLGVRHIETDVHLSADGRVVISHDPTVDRCFNGVGRIADLTWRELSKLEDSHGAHMILLEEALDAFPDMYFNIDAKVDGVEGPLVEIIADANAFDRVVLASFSESRLRWIRARAAGRVSTSIGMSAVTRLVAAAKTASKPRLWRIPGPHQGVFAAQVPISYGPLRVVDRRFVAAAHTAGLAVHVWTVDEPEEILSLIELGVDGIVTNRPRFVRDFLAERGMWEAPPAPGARGQLARD
>NZ_CP040505.1|WP_051057788.1|648708_649407_+|M23-family-metallopeptidase
MTVALPLSGTLGAECSVEFPTRSLGYHAQATSWATQISPQTATPLSGSQTAASRTRVRTPLTLTTCLPSDVSGSGERSLDVNPMTIYWPLMEGTYEVTSPFGTRVNPVSGQVLVHEGVDMAAPMDTPLYSIYAGEVVEVAENSHSGAYVKIKHTGVDGTVFYSAYLHQYMNKIRVTTGEKVEAGQEIGAVGSNGWSTGPHLHFEIRDSTDKPVDPQEWMANAGALYIGQRNC
>NZ_CP040505.1|WP_005961917.1|647199_648267_+|HlyC/CorC-family-transporter
MNIAWGLIVTFTLLLLNAFFVAGEFATTSTRRSQIEALKAEGARGSAHAMYALEHVSLMLAICQLGVTIASTTLGLVAEPAIVKLVEEPLAALGASASSAHLVAFLLALALVLFLHVVFAEMVPKNVSIANPARMLLLLAPVLVAIGHLLRPIIRAMDEFANRFVQLFGVEPKSEITATFTTEEVASIVEVSAAQGALSDDLGLLSGALEFSEESAQSAMVPLDELITLESTTTPAQVEREVAVTGFSRFPITNEEGAITGYLHLKDVLYAKAEERDVPVTPWRIRKMGSVNAEDEVEDALRYMQKTGTHCALVVDDARRVLGVLFLEDVLEELVGEVRDGLQRDDLAWERSEER
>NZ_CP040505.1|WP_040313686.1|645889_647203_+|HlyC/CorC-family-transporter
MLLLGVVLTAGTFIFVSAEFSLVALDQAIVEKRAAQGDPRAKAVLTATRTLSTQLSGAQIGITLTTILLGYTTQSTLADLLSKGLVSTGLAYALASGAAAIIAAIVINAFSMLFGELVPKNLALAHPLKTARLVVAFQTLFTSAVKPLILVLNGTANGVLRLMGIEPQEEISSARSASELEAMLRYSAQEGTIDTSTASLLMNAIRISDLTAVDVMTDRGRMRILESTATAADVVALSHESGHSRFPVIGDDLDDIIGLVSLRRAIAVPFERRAEVPVVSSSLLAEAPSVPETVPIGPLMVQLRDEGLQMAVVVDEYGGVSGVVTLEDVIEEIVGEVSDEHDGRRRGIRTRSDGQILVPGLLRPDELAERTRITLPEDGAYDTLAGLVMAELGRVAQVGDVVVVEGYTLEVVQMQGRRITQIAIAPPEAAEEEEVEL
>NZ_CP040505.1|WP_131247255.1|641654_645482_-|multifunctional-oxoglutarate-decarboxylase/oxoglutarate-dehydrogenase-thiamine-pyrophosphate-binding-subunit/dihydrolipoyllysine-residue-succinyltransferase-subunit
MRVATSEQEQPGAENWYIQRMREAYLADPASLDESWRRYFSTQSAPPQLRAAKPPLSPLQREQETAQAPTNALILAEEAFAQDTAQTGTNEESVTRSDLPPAPPSMIAEASSPYTRQLRTHSASMRSSNTLNEDESALLKGVARATARNMDDSLSIPTATSQRQIPAKLLIENRALLNAHLARTTGGKVSFTHLIGYALVEALCEMPELNVRYEMTGTKPTIHRHAHVGLGLAIDVAMKNGERSLMVPVIHDADTLTFMEFVAAYQDIVQRARTGELTTADFAGATITLTNPGTLGTTTSVPRLMNGQGAIIGVGATDYPAQYRGVSARRLASMAIGKTMYLSSTYDHRIIQGAASGRFLGLIDKKLSGVEGFYERVFTSLHVPVSPYAWEADVEYDPEREKGKPARIVELIHAFRSRGHLAADTDPLAYRVRHHPDLDMTRYGLSVWDLDRPFPTGGFGGVDQMLLRDILTRLHDTYSRSLGIEYMHIQDPEQRAWVQERIEGPYEAPSAAEQRHILQTLIRAEAFEEFLQTKFVGQKRFSLEGGESLIPLLDEILARSARNGLHEVAIGMAHRGRLNVLANIAGKSYGQIFSEFEGHQDPSTGQGSGDVKYHLGTWGVYSLDDGVATKVYMGANPSHLEAADGVLEGIVRAKQEELGDPELPIIPVLVHGDAAFIGQGVVQETLNLSQLSGYKTGGTIHVIVNNQIGFTTGPTSGRSTRYPTDLAKGLQIPILHVNGDDPEAVVRAAALAWEYRTAFHKDVLIDMVCYRRRGHNEGDDPSMTQPVMYELINRIPSTRAVYTRNLVGRGQLTEAEAQASIAEYEEELSRILEETREKRLSTTAEGAEASADKAPGTAPAGFGSPAGEEAVPNWVAHESQLPGRGMMIGWQSCASEDLIRRIGDAHTAFPSGFTPHPKLAQLCERRRDMAYGTRPIDWGFAELLAFGTLLMEGTPIRLSGEDVRRATFVQRHAVLHDFLDGREFTPLQFLTADQARFDVYDSPLSEYAVLAFDYGYSVERPDALTIWEAQFGDFANGAQTVIDEFICSAEQKWGQRSSLVMLLPHGYEGQGPDHSSARIERYLQLAAQDNMWIVQPSTPANHFHMLRRQAYQRPRRPLIAFTPKQLLRLSAATSSIEEFTSGSFRPVIDEMDLSIDPSAVTRVLLCSGRVYYDLLREREARSDRSTAIVRLEQLYPLPEAEIREVLDAYPSAQVSWVQDEPRNQGAWPFLALNMFMEWSKPVRLVSRPESATTAAGRASLHKAQNADLIARAFDR
>NZ_CP040505.1|WP_005961922.1|641038_641638_-|lipase
MRLCVIGDELVAGTGDPRGLGWVGRVLARSKFSEPPTLMTLASPGETTKDLCARWEGEVMSRLSSGGPRGLLVHIGANDILAGLSSARSRLNLANITDRATALGIPCFVIGPAPLAGVDHHSVKELSRSCAEVCQRRGLPYVDLATPLATHDQWFEDMAASRAQSASGLTLPGQSGYALIAWLILHSGWYEWTGAEPQD
>NZ_CP040505.1|WP_051057789.1|639278_640637_-|two-component-sensor-histidine-kinase
MPQPRLPSFRGADLVSAGLLGLVTATNLHAFTPPLSSVGEALGPEAELPLFGVFTLVCCAALAVRTRHSLLSVILIEGMLALHLLVFNSLSVLSIVLCLVAAETIGSRIARPWSWGLLAVLALGSAATALRVSPLFNEEIALFTRLFFVLIAAWSLIGVAYLWGLNGRRRRDRVEQAIARAEELAAHAEDRRRLAVVEERQRIARDVHDLLGHSLAVIGMQAEGARAMLAADPTRAEEALATIGELSRVGIDDLRRLVDVLREEESEQVDSSVGIEGPGVPLLAGECSSGRAPLAPETRTGLEGLIGLVERVRAAQLDIRLTLEADSSVPASVDAACSGIVHEALSNAMRHGAGPVLVDMKVRAEGVDVSVCSAQKVCAPQDGSHAPQDGSHAPQDVSKAGDGPRVGTGLTTMRERAEALGGTFHAAPRSDGRWLVRAHLPAEGPGSGKEKK
>NZ_CP040505.1|WP_005961925.1|638589_639282_-|response-regulator-transcription-factor
MIRIGMADDEPLFLAGLAMLLDAQEDMEVSWRAGNGKEALDLAARSSVDVLLLDVQMPLCDGLEATRRFVSRGLSGRIVILTTFDTEGYVLGAIEAGASGFLLKNTPPQSLIDAIRTLASGDSVISPGPTRRLIRAMRETTAPSRTSRERAPSEPVSAELTEREVEVLALIAQGLTNQEMCDRLWVSMPTIKTHVSHLLVKTGARDRVQLVLYALRTGVADLDSVLAQGH
>NZ_CP040505.1|WP_131247257.1|638283_638358_+|hypothetical-protein
MSKRGRKRRDRRKGGANHGKRPNA
>NZ_CP040505.1|WP_005961905.1|653656_654112_+|ribose-5-phosphate-isomerase
MRVHIGTDHAGFELKEQLVKHLEEKGYEVEDHGAHEYDTLDDYPPFCLEAAEAVVAEPGSLGVVIGGSGNGEQMAANRVKGVRAALVWNDSTARLAREHNNANVVSIGARQHSVEECFALVDAFLETPFSQDERHQRRISLMDEYEETHRK
>NZ_CP040505.1|WP_005961902.1|654185_654848_-|hypothetical-protein
MSSRLGPDSSIHQTLSWIATLILANLIFVGLAVPVFTAGPGLLVMALVCARLIDSESTAILPALRSALGGAGVAASLLFLGEIAFALLLGWEWMVFSSLADPILRFVAQAVLVFVAVLLLLLHVWVWPMMAQRLREKGRISVIELPMLLRAALLVSIGKLPRSILAIAVAIGPLALAAVSLPWLIRVGFWFLLFGVAFSMYVCVLATHPVLFSSDSRTQD
>NZ_CP040505.1|WP_040313500.1|654858_655917_-|LacI-family-transcriptional-regulator
MGTREGHARPTIKDIAKAAGVGVVTVSRALNDKPEVSETTRAKVLAVAEKMGYRPNRHARLLKLSHNPAVALVVKGIDNLFFQQMLDTMETRVRERNYLLTLVKVPHWADEVEEAIKFVDEELIAGVIFLGGSFSHEAYAFERLHAPFVMSTVSRLNKVPDALYSSVSVDDAFEAEKAVRHLIELGHTRIAVLGVPSTDVSVGAQRVTGYRHALAHAGIPVDEDLIRFEVLDQGNPYTLQYGYELAKKLLAERPEVTAIFAIADVLAIGAMRAIREAGLKVPENISLVGFDGLPLGDFMDPQLTTLAQPAQQIARLTCDLLFDQIASGPSRHVFVPGTLHRGGSTGPVRTIR
>NZ_CP040505.1|WP_005961898.1|656022_656901_-|carbohydrate-ABC-transporter-permease
MSTDARIPQQYNQPKHNPLGKAILYIILFALTLVFIGPLLFILNNSFKGRFFISDAPFALPLGEYWSGLDNYFSGLKTTNFFVAAGWSFFITVGSVIVIVFFCAMTAYYITRVKTKWTNALYLLFVFSMVVPFQMVMFPTVKLADILNLDNPLGMILLYLGFGSGLSVFIFSGFVKSIPIEIEEASMIDGCGPLQNYFRIVMPMLKPVMITVAILNTMWVWNDYLLPYLVIGLSTPYKTIPVVVQQLVGSHGSNDMGALMAMLVLAIIPIVIFYLFSQKYIIEGVVAGAVKG
>NZ_CP040505.1|WP_005961896.1|656897_657743_-|sugar-ABC-transporter-permease
MLKSLKRFGPIFLGPTLISFTLAFLAPFAIGLYLSLCKFTTVTNASFIGIQNYIDAFSERQGFVHALLFTAAITIVSVITVNIFAFAIAYVLTRKLKGTNFFRTVFFMPNLIGGIVLGYTWQTIINAVLLHWQTTLVTDAKYGFIGIIVLLNWQMVGYMMIIYIAGLQAVPKDLIEAAEIDGAGKWLILRNVTIPMVMPSITICLFLTLSNSFKLFDQNLALTNGQPLNMTEMAALNIVNTFFARTGFEGVGQAKAVIFFLLVSLIAFIQLRATRGKEVEA
>NZ_CP040505.1|WP_005961894.1|657838_659170_-|ABC-transporter-substrate-binding-protein
MSKFIKIAATTVAAAAALTSLTACSSGADKAADDKGSVYYLSFKPEQDQIWQDVAKAYTEETGVEVKVVTAASGTYEQTLKSEVAKSDAPTLFQINGPVGLKNWIDYTADLSETDFYKNLLDPSLAVTKDGKVYGVPYVVEGYGIIYNQKIMDKYFALGGAKVKSMDEITNFDTLKAVADDMQAKKGELGIEGVFASTSLKPGEDWRWQTHLADLPVYFEYQDAKVEDSDELKFTYNEQFKNIFDLYLTDSTIDPKLASSKAVTDSMAEFALGKAAMVQNGNWAFGQISEVAGNTVAAEDVKMLPIYTGHKGEEKQGLNIGTENYFSINSQASEADQKASIDFVNWLVSSEKGKKLMVEDLGFIPPFNTFTDAEQPSDPLAQEIVRYMSDSEKKSIPWVFTTFPSQTFKEDFGAALSQYAAGQMEWNKVVEIFTTEWKAEKGA
>NZ_CP040505.1|WP_005961890.1|659532_661212_+|arginine--tRNA-ligase
MTPEELALAIRGALLDSIGSGVLALDPEAVPETVKVERPRNRDHGDWATNVAMQLAKRAGLAPRAFAEILAEALRLVEGIDSIEIAGPGFINIRLGAASAGELARTIVQAADSYGSNSSLAGTSINLEYVSANPTGPVHLGGARWAAVGDSLARLMTASGAKVTREYYFNDHGSQIDRFAKSLYARAMGREAPEDGYGGQYIADIAEKVRHDALQAGEADPITLPEDEAVEAFRARGVELMFGEIKERLRDFRSEFDVFFHEDSLHESGAVARAIDTLRERGEVFDEDGAVWLRTTSYGDDKDRVLIKSDGQAAYFAGDVAYYLDKRNRGADSAIYLLGADHHGYIGRMMAMCQAFGDTPGVNMQILIGQMVNLLKNGAPVRMSKRAGTIVTLDDLVDVVGVDAARYALVRVSMDSNLDIDLDLLASHTNENPVYYVQYAHARTRNVARNAAEHGVNRDAGFDPAALDTPADAELLGVLAGFPAQVAQAAELREPHRLARYLEQLASAYHAWYGQCRVTPRGDDPVEPGHVARLWLNDAVTQVLHTGLGLLGVSAPERM
>NZ_CP040505.1|WP_005961888.1|661214_662642_+|diaminopimelate-decarboxylase
MSEALDSMDFRPLGELLCPEPEERPDLWPWSARRREDGVLEIGGVALSEVAQEFATPLFVLDRADLRGRANIWATAMAEEFWDGYGMNGGDAFYAGKAFLCSDVVRTVSEVGMGIDTASLGELTMAVRSGVEPSRIGLHGNNKLDSEIELALRAGGGKGIERIFVDSLPEVAQIEAIAARLNTSARVMIRVKTGVHAGGNEYISTGHEDQKFGVGAFDGQLEEVVAAIEAAPHLEFRGLHSHIGSQIQGTAAFEEAASIICSLGKKISEMIGRPVEEIDLGGGVGVAYTGDDEPPTPPVEVVRQIARSVREACTRLDMKIPRVSVEPGRSIAGPSTVTLYRVGAVKDANLAEGFTRRYVAVDGGMADNIRPALYGARYTATLANRVSDAELVRSRVVGKHCESGDIVVWDVDLPSDVRAGDLLAVPVTGAYGYSMASNYNMLTKPGVIAVEDGAAEWIMRPQTVEDLLALDPGLD
>NZ_CP040505.1|WP_005961884.1|663010_663823_-|hypothetical-protein
MSFHAFIQRVFFNTYVDWHMKNPSFDRDGFHIVGIDNSVKAMRDGYFTYTQIRPPRPIHGCTSITARVADAEGVTNLHLRIADTTYRIANVSYEETTRLLRAFVTKSVLPDRSRWVEVPSGEEERTAQRFAELVDLLLGDPQSGQRFLSTALPKNSGDFEEAWLELSEELIGCGKAVELGLRTERDDFLVSVKGLLPDSLPRIDESALSEDACIMQWCAAINSSWSEHVLAAMDIGSDTYVMLVLDAEEFARARRLARSVLLRIAPAEQM
>NZ_CP040505.1|WP_005961882.1|664346_666929_-|ATP-dependent-helicase-HrpB
MNRFDDVLATPPPLPVVDALPRLSDAVRPGQALVLSAPPGSGKTTLLPLLLASATPARVLVTQPRRIAVRAAARRLASLLGTRLGEEIGYTVRGERIVGPETRIEVMTPGVLLRRLQADPSLEGVSAVMLDEFHERAIDTDLALAFLLDVRAVMREDLHLSLTSATLEAERTARLLSTAIDEVETLSVPGALHPLELHYAPARSGALNANGNGRISVNRDFLAHVARTVEEALHSAADDVLVFVPGARQIDELASFLGGFGLHLIGGEQVEVLPLHASLPSTAQDRVMSGAEQDRPRRIIVSTAVAESSLTVPGVRIVVDAGLSREARLDAARRASGLVTVSASKAQLEQRSGRAARLGPGLAIRCMSEVDFARRTAQPLPEIATADLTDAALQALVWDSRGLDGLRLLDAAPRAALDSAVTTLRILGLVDSAGVVTPLGRSTAALPLDPALGAALLSLAPRIGKARCARLIAFLGENPRVRDADAAAFVQSLPGTGDRAFVERVKTQARRLEGLCPPPSTGAASGREGSDDTLGAPSEEEALGLVIASARPWWIARKRPGGTSYQTIDGQGTSLPSHSPLEGSPWLAIAEISREAGRADGLIRLAVPIREEVARTAGGGFLAEESRCSFEGGRLRAVRFTRLGAILLNEGVGTQPSVEDAARALDELLTSRGLAALDWSEGASSLRERLLALHEACSEPWPDVSDARLISDAREWLALELPRLAGGAPLSSMRLEEALRALVPWPQAGMIDEWAPRSIEIPTGARRRIDWSSARPVLSLRVQEAFGWVDSPVFAGGRLPLVLHLTDPAGRPAAVTSDLKSFWAGPYRDVRAQLRGRYPKHPWPENPFSEKPTSRAKPRR

Crispr_ID: NZ_CP040505_22

• CRISPR_ID: NZ_CP040505_22
• CRISPR_location: 712710-712922
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 3 spacers

Consensus repeat of NZ_CP040505_22

Consensus_repeat	Method
TCAATCCCAGCTCCCACGTGGGCATGGT	CRT

spacers of NZ_CP040505_22

>22.1|712738|33|NZ_CP040505|CRT
TGAGCTGTTACCGCCGAGGATCGTGCCCTCGAC
>22.2|712799|34|NZ_CP040505|CRT
GCCCTAGCGCTTGGCGGCGCCGTCAGCGCCAACA
>22.3|712861|34|NZ_CP040505|CRT
TGAGTTCGGAGCCGCCGCAGCCATGATCGGCCTG

CRISPR arrays and Neighbor proteins around NZ_CP040505_22

CRISPR arrays

The CRISPR arrays of NZ_CP040505_22

>merge|NZ_CP040505|22|712710-712922|CRT
TCAATCCCAGCTCCCACCTGGGCATGGTTGAGCTGTTACCGCCGAGGATCGTGCCCTCGACGATTTCCCAGCTCCCACGTAGACATGGCGCCCTAGCGCTTGGCGGCGCCGTCAGCGCCAACATCAATCCCAGCTCCCACGTGAGCATGGTTGAGTTCGGAGCCGCCGCAGCCATGATCGGCCTGTCAATCCCAGCTCTCACGTGGGGGCGGT

>NZ_CP040505|22|4|712710-712922|CRT
TCAATCCCAGCTCCCACCTGGGCATGGT	TGAGCTGTTACCGCCGAGGATCGTGCCCTCGAC
GATTTCCCAGCTCCCACGTAGACATGGC	GCCCTAGCGCTTGGCGGCGCCGTCAGCGCCAACA
TCAATCCCAGCTCCCACGTGAGCATGGT	TGAGTTCGGAGCCGCCGCAGCCATGATCGGCCTG
TCAATCCCAGCTCTCACGTGGGGGCGGT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005961800.1|713206_713644_+|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl|CDD|234787
NZ_CP040505.1|WP_005961798.1|713646_715104_+|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl|CDD|235113
NZ_CP040505.1|WP_005961797.1|715100_716090_+|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl|CDD|235536
NZ_CP040505.1|WP_040313490.1|707639_710585_+|translation-initiation-factor-IF-2	unknown	unknown	gnl|CDD|235401
NZ_CP040505.1|WP_005961796.1|716707_716977_+|30S-ribosomal-protein-S15	unknown	unknown	gnl|CDD|180170
NZ_CP040505.1|WP_131247145.1|700557_700782_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005961812.1|705661_706132_+|ribosome-maturation-factor-RimP	unknown	unknown	gnl|CDD|234627
NZ_CP040505.1|WP_131247141.1|722990_723278_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005961818.1|703224_703713_+|S-ribosylhomocysteine-lyase	unknown	unknown	gnl|CDD|179399
NZ_CP040505.1|WP_131247143.1|720477_721353_+|hypothetical-protein	unknown	unknown	gnl|CDD|226951
NZ_CP040505.1|WP_005961814.1|704419_705589_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005961804.1|711153_712185_-|DUF559-domain-containing-protein	unknown	unknown	gnl|CDD|225408
NZ_CP040505.1|WP_040313491.1|706137_707184_+|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl|CDD|237061
NZ_CP040505.1|WP_083879472.1|707223_707532_+|YlxR-family-protein	unknown	unknown	gnl|CDD|377288
NZ_CP040505.1|WP_083879436.1|723306_723414_-|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl|CDD|379402
NZ_CP040505.1|WP_005961795.1|717416_719765_+|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl|CDD|131743
NZ_CP040505.1|WP_129583346.1|722655_722856_-|ribbon-helix-helix-protein,-CopG-family	unknown	unknown	gnl|CDD|222824
NZ_CP040505.1|WP_005961822.1|700834_702796_+|DNA-primase	unknown	unknown	gnl|CDD|235551
NZ_CP040505.1|WP_005961816.1|703881_704367_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_083879437.1|721295_722048_+|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|225107

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005961800.1|713206_713644_+|30S-ribosome-binding-factor-RbfA	gnl|CDD|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	3.11491e-43
NZ_CP040505.1|WP_005961798.1|713646_715104_+|tRNA-pseudouridine(55)-synthase-TruB	gnl|CDD|235113	PRK03287, truB, tRNA pseudouridine synthase B; Provisional.	2.86295e-118
NZ_CP040505.1|WP_005961797.1|715100_716090_+|bifunctional-riboflavin-kinase/FAD-synthetase	gnl|CDD|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	6.94229e-118
NZ_CP040505.1|WP_040313490.1|707639_710585_+|translation-initiation-factor-IF-2	gnl|CDD|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_CP040505.1|WP_005961812.1|705661_706132_+|ribosome-maturation-factor-RimP	gnl|CDD|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	1.24211e-34
NZ_CP040505.1|WP_005961796.1|716707_716977_+|30S-ribosomal-protein-S15	gnl|CDD|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	2.11221e-51
NZ_CP040505.1|WP_005961818.1|703224_703713_+|S-ribosylhomocysteine-lyase	gnl|CDD|179399	PRK02260, PRK02260, S-ribosylhomocysteine lyase.	6.76067e-85
NZ_CP040505.1|WP_131247143.1|720477_721353_+|hypothetical-protein	gnl|CDD|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	4.01581e-08
NZ_CP040505.1|WP_005961804.1|711153_712185_-|DUF559-domain-containing-protein	gnl|CDD|225408	COG2852, COG2852, Very-short-patch-repair endonuclease [Replication, recombination, and repair].	9.24235e-08
NZ_CP040505.1|WP_040313491.1|706137_707184_+|transcription-termination/antitermination-protein-NusA	gnl|CDD|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	4.89099e-162
NZ_CP040505.1|WP_083879472.1|707223_707532_+|YlxR-family-protein	gnl|CDD|377288	pfam04296, DUF448, Protein of unknown function (DUF448).	9.35696e-24
NZ_CP040505.1|WP_083879436.1|723306_723414_-|helix-turn-helix-domain-containing-protein	gnl|CDD|379402	pfam13936, HTH_38, Helix-turn-helix domain. This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.	5.27414e-05
NZ_CP040505.1|WP_005961795.1|717416_719765_+|polyribonucleotide-nucleotidyltransferase	gnl|CDD|131743	TIGR02696, polyribonucleotide_nucleotidyltransferase, guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.	0
NZ_CP040505.1|WP_129583346.1|722655_722856_-|ribbon-helix-helix-protein,-CopG-family	gnl|CDD|222824	PHA01623, PHA01623, hypothetical protein.	1.7636e-05
NZ_CP040505.1|WP_005961822.1|700834_702796_+|DNA-primase	gnl|CDD|235551	PRK05667, dnaG, DNA primase; Validated.	0
NZ_CP040505.1|WP_083879437.1|721295_722048_+|response-regulator-transcription-factor	gnl|CDD|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.51575e-48

Protein sequences

>NZ_CP040505.1|WP_005961804.1|711153_712185_-|DUF559-domain-containing-protein
MSATPSITQVEKRVHFTGRRHKHCRLNADTIKIARGVHLESEFLRGLETPWAQRRAVEIARVFAVSHLRRASTAVGRSALLLHGLDLPEPLPAENAARISFTGGRGTSRGALVLPAVVLDGIIIAPRVPVTFVGSTHVRTHSVRVHGILAQDLDAAAISTALLSPPRIAFILVSQAYRTILDIFEGERPAPMASDRVRRQSLAALHELPRGRGWEQASRILAWADPACESPAEAWLLWNLLRAGVRGVHTQMHVCEAGQHFFVDMALPELRLAIEFDGRGKYGASVQQIHRTIEAERRRERLLVASGWTVIRFDWADLQDPEGLAAELVRIIEARRLALGMRE
>NZ_CP040505.1|WP_040313490.1|707639_710585_+|translation-initiation-factor-IF-2
MAKLRVHELAKELGITSKELLTYLKDHGEFVKASSSALEPPVVRSVREHYSSKGTGEEQNPAAKTSASKKPSAPKASAAKPGDKSTQSSAKAKTPASAPVPADPRAAASTGPAFSSTPKPGATPAAPKPGAASAAPKPGAAPKPGAAPKPAAAPKPGAAPKPAASPKAPAPKAKTTGRDGAPAAPRPGAPRPAGPRPGPRPAGPRPGNNPYASSQGMPRPGGTGGPRPGPRQGGPRPGQGGSERPARGGAPRPGGSGGPRPGGAPRPGGRSGGNRPNPGMMPGQANFARNAATGTNDRPTRGGAGGRGRGTRPGAGGGAGAPAGGGFGPARGGGRGGRGATPGAFGRGGGRNQRGRKSKRAKRQEFEQQNAPVIGGVSIPRGNGQVVRIRQGASLADFAEKIDVNPAALVTVLFHLGEMATATQSLDQDTFEALGAELGYDVKVVSPEDEDRELLESFDIDLEAEELDDAEHMQPRPPVVTVMGHVDHGKTKLLDAIRHTDVVDTEHGGITQHIGAYQVNVEHEGKTRPITFIDTPGHEAFTAMRARGAQVTDIAILVVAADDGVMPQTVEAINHAQAANVPIVVAVNKVDKEGASPDKIRGQLTEYGLVAEDYGGDVMFVDISAKERTGIRELLEAVLLTADAALTLEANPDTAARGVAIEANLDKGRGAVATMLVERGTLRIGDAIVVGSAHGRVRAMFDDTGADVAEAGPSRPVAVLGLASIPRAGDSFLVATDERTARQIADKREAAERQAMLAKRRKRVSLEDFDKVLKEGEVDTLNLIIKGDVSGAVEALEDSLLGIDVGEEVQLRIIHRGVGAITQNDVNLATVDNAVIIGFNVRPAERVVELADAEGVEIKYYNVIYSAIEDIEAALKGMLKPIYEEVSLGTAEIRQVFRSGKFGNIAGSIVRSGTIKRGTKARLVRDGVVVADNLEIQSLRREKDDVTEVREGYECGITLGFKDITEGDLIETWAMREKPRD
>NZ_CP040505.1|WP_083879472.1|707223_707532_+|YlxR-family-protein
MNESEALPGAAPVRTCVGCGKRSPRSELLRFAVYHGVVSFDPEAQRPGRGAWIHPDLRCIDKARKRRALTRALRLEEVVSEELWTQCEQVVSSKASPTPELE
>NZ_CP040505.1|WP_040313491.1|706137_707184_+|transcription-termination/antitermination-protein-NusA
MEIDMTALRMVEQEKGVSLGRLVEAIEEALLKAYHNIPGAVSKARIEIDQKTGRVTVMAMDEDEDGNEIGEFDDTPKNFGRIAQSTARSVIMQRLRDADDQKVLGGFANQKGQVVTGIVDQSRDGRITIIKVGDDFEAVLPDSEKAPGEAYRHGDRIRAFVVNVERTEKGARITLSRTHPGLVAGLFEREVPEIQQGLVKIKAIAREAGHRTKIAVAATREGVNAKGACIGPMGSRVRAVMTELNGEKIDIVDWSADPGRFVANALSPARVSRVVVHSIDNRTATAIVPDFQLSLAIGKEGQNARLAARLTDFHIDIHSDTETGDEGVASHSSMPDDVTSRSYSDPQD
>NZ_CP040505.1|WP_005961812.1|705661_706132_+|ribosome-maturation-factor-RimP
MAQPQHFEALEKELRPLVEGFGLELDAVLSVKESGMKIVRVIVESPETGQGLDSELLAQVSRAVSPLVDQADPIDSEYYLEVSTPGAERELLEPRHWVKQIGRLASVKLRDGSRLCGRVTSADDKGAVLDVDAQTVRIEYAQMKKARARVEFGSEE
>NZ_CP040505.1|WP_005961814.1|704419_705589_-|hypothetical-protein
MTIFGFFSRRPDSFGSPKGFSASFEHALASEHAHSSRTASSSRKGRRLAVLGATAGTLALLLSSCASGVRFDSRGASLPELTEVDTLRETAARTEAAAWARASSLAEDASSCPECAQVLSLVAANSQARLDALGGVWSPWGDHTPEGAEEVPPIADAPVTVEELVSWLASTARRDLAVAADPTLMESDNSRALASVALGRYRSALDLAGAFNVSLDSEDAAVAEFNARLHSFISSQTMDLLSGWGLDPQALNASSILPDADLSAAQSLAESTELAETVASWDCTAQSLPKAQLVEFSIDDAELRSHELFSRVDHYLSAGANDHRTTRCTLDSLDAASLANGLLLADLHLLSSDDQTIRLIGLHEALEDLSSWSFLNEYGTSPALIGASA
>NZ_CP040505.1|WP_005961816.1|703881_704367_-|hypothetical-protein
MPNLIPTEVSVLLPEGDRRAPAEQLESGEWIIAGRHAIILANKESVLDSGMWYEIATAKWSAEDRVLSVEWMDPARTPIRVETVSQDPRVFMRILSERVNHSIVVHKSTQVSNGTTITVWIRRREDDQLFSVLAAFGPLDEACEREAAHFEQQLREGVGLD
>NZ_CP040505.1|WP_005961818.1|703224_703713_+|S-ribosylhomocysteine-lyase
MAEVESFTLDHTAVLAPYVRLICVETGPKGDEISNFDLRLVQPNENAIPTGGLHTIEHLLASLLRDRMEGVIDCSPFGCRTGFHLITWGTPGVETVTRALVSSLEAIATSVNWQDVPGTDITSCGNYRDHSLFTAREWCKKILEEGFSTNPFVRTPLPELAD
>NZ_CP040505.1|WP_005961822.1|700834_702796_+|DNA-primase
MAGLIRKEDIALVREAARIDEIVGEHVALRPAGVGSLKGLCPFHDERTPSFHVRPHLGMWHCFGCGEGGDVISFVQKIDHLSFTEAVEFLAQRAGITLHYEEGGTQVRSEEPGKRQRLLEAHRVAEEFYQRQLASAEGAAGRQFLAKRGFNQAMCTHFGVGYSPDSWDALTRHLRSKGFTDKELEIAGLASRGNRGLYDRFRGRLMWPIRDITGATVGFGARRLNEDPQSPKYLNTPETPIYKKSQLLYGLDLAKKAIAKEHRIVIVEGYTDVMAAHVAGEPCAVATCGTAFGSEHVKIVRRLLGDAADPAAGVLLSNGRARGSEVIFTFDGDAAGQKAALRAFHEDQNFASQTFVAVDREGMDPCEVRMARGDKGVIELVRSRTPLFEFVIRSVIRQVDLRTAEGRVRALSASAPIVASIRDRALRMEYTRSLAGWLGMDMRSVADAVRHAVRPAPEPRYGEASDMAGAGLPSPVPRRRGPEDPITRLERQTLEVVLQHPVFVIGSGFEDLEGDSFFVPTHRAVHDAIRACGGLDAFAKLLHSAEEYFGVGERATEAASRRFVDQVRDAAGELVGAAVTELVVAPLPQDREEEMRSYCRGVVAALVRTDLTRKLGEARGRLQRMDEDDPEYAEAFRELMRLENRRQTFTERN
>NZ_CP040505.1|WP_131247145.1|700557_700782_+|hypothetical-protein
MSAVSCLAVFSCPAAPLAHGAWLGVHVAWLGVHGAWGVHGVWLGVHGAWLGVVISEGITRPDVSAWTSLRLIAC
>NZ_CP040505.1|WP_005961800.1|713206_713644_+|30S-ribosome-binding-factor-RbfA
MADEARQRKVQDRIQQTVARLLGRRIKDPRLGFVTITDVRVTGDLQHASIFYTVLGDDEDRKATARAFESAKGIIRSEVGKALGIRLTPTIEFILDALPDSVAAIEGALAAAKAKDEQIARHAQGAAYAGDEDPYRHDDADEDAL
>NZ_CP040505.1|WP_005961798.1|713646_715104_+|tRNA-pseudouridine(55)-synthase-TruB
MAKRPDHSLPGILIVDKPSGMTSHDVVSRVRRLAHTRKVGHGGTLDPMATGVLVVGVGKATRLLTFITGHSKTYEATIRFGLTTSTDDAEGALVQALGCASLSLDELEHAMEGLRGEIDQVPSSVSAKKIDGKRAYELVREGVEVELKANRVTVSRFERCSDLRRATLDTPSGRLEVLDVDVVVDCSSGTYIRALARDLGSALGVGAHLTRLRRTRVGAFTLEDCRTLDSLEDEAANSLVPCHPEMPLPAPTSAGALKSASHAEAPLPAPGLIPLDEAVTAMFPIISLNEAEAARFLHGNPPKRGPKELEALMWAAPVHRAPVPPTPGVAASPAPEATLPSSPESAVSPTPEAPAALTRGAPVSSVSGALAASAPGVAVTPSPEALAVPTPEVPATSASGVSASPALEAPNPSSPRTSAKDALASTMPDHGAGLNARTRGETAPVLVDGDTTIFAAADPKGRILGLIDASKPRLKTICVFFGGEG
>NZ_CP040505.1|WP_005961797.1|715100_716090_+|bifunctional-riboflavin-kinase/FAD-synthetase
MKIWSTLSDVPGGERSVVTIGNFDGMHNGHRRVVSSCVERARKRGTDAVAITFDPHPIQVHAPEAGLQLIFPLRDRLDAMAASGLDATLVVHYDASVYMLEPEEFVVEFLVERLGAVEVVVGEDFHFGRANLGTIDTLRELGRRYGFDVTMVTDIQAPEGRRWSSSWVRELLAEGDVAGAARVLGHLHRIRGTVEHGFKRGRELGFPTANLQEGIEGVVPADGVYAGWVVRQVPGTESAEFLPSAISVGTNPQFDGVKRTVEAHVLGRSDLNLYGERIAVVFVSRIRPMLAFDSLEDLLAQMDDDLRQSAYVLGVGVASRIDPEDVTAC
>NZ_CP040505.1|WP_005961796.1|716707_716977_+|30S-ribosomal-protein-S15
MPLSKDVKDQIIAEYATHEGDTGSPEVQIALLTKRIKDLTEHFKYHTHDHHSRRGLLLLVGRRRRLLGYLASIDIERYRSLVERLGLRR
>NZ_CP040505.1|WP_005961795.1|717416_719765_+|polyribonucleotide-nucleotidyltransferase
MMEGSDIIAAEAIIDNGSFGKRTVRFETGRLAKQAAGSALAYLDDETTVLSATTVGKSPKDQFDFFPLTVDVEERAYAAGRIPGSFFRREGRAGTEAILAARLIDRPLRPGFVKGLRNEVQVVETVLTVHPDDAYDVLAINAASMSTQIAGLPFTGPIGGTRLALIDGQWVAFPRWSELERSVFNIVVAGRIVKAEDGSEDVAIMMVEAGGGKNQWNLIQAGAPAPTEDVVADGLEAAKPFIKVLCEAQIEVAKHASKETAEFPLFIDYTDEQYKAVEEFVGDKLAKALLTEGKLARDEAVDAVKAEMLEGLAEKYPEQEKDLKAAFRSLEKYTIRQRTLREEIRMDGRTPRQIRSLSAEVEVLPRVHGSALFQRGETQILGVTTLAMLRMEQQLDNLSPVTAKRYMHQYNFAPFSTGETGRVGAPKRREIGHGDLAERALIPVIPPRDEFPYAIRQVSETMGSNGSSSMGSVCASTLSLLQAGVPLRAPVAGIAMGLMTGEVDGVQKSVTLTDILGAEDGFGDMDFKVAGTKDFITALQLDTKLDGIDSQVLRGALAQARDARLAILDLINRAIDGPDEMSPNAPRIITVQVPVDKIGEVIGPKGKMINQIQEDTGADVTIEDDGTVYIASASGQSAEAARQMINQIANPQMPEVGERFVGTVVKTTSFGAFVSLTPGKDGLLHISQVRRLVGGKRIESVEDVLQVGQQVEVEIAEIGDRGKLSLHAVLDEDAAAAEAAGSESMERTERRERRDRSERRERRPRTRTRRKREDEEESASEE
>NZ_CP040505.1|WP_131247143.1|720477_721353_+|hypothetical-protein
MTTFLVVLATAELISQNRWVLVVISGVAVSGAYYLEPVDRSGALLVWLLLLQMVIAVSIGLLMLTSSKQIELLKQQVEYLAHRTNTELAVTLHDTVITDLTKALVMVRSLQVPNRDQPLYALADIEQSIARAITQLRRTVTMLQPRNDPMNESVSHALDDAAQMLRMGRRRLHSALPDEHELSMLLGATRLRFLVVFLKEALMNCVKYAPVNSIVNVSADVSERGVEVTVVSDLSKEELDLQLELSSGLGIMSLQSRAQTLGGDVYFGTVPGRWIISLVMPIDAVRIGGVE
>NZ_CP040505.1|WP_083879437.1|721295_722048_+|response-regulator-transcription-factor
MDNIPRHADRCCPNRGSGMTAPMSTAERIRPIRVILADDDPNLRDALASLLGMDPRISIVGTAADGREVLALVEHRPADIVLMDVEMPVLDGVETTRIMSELHSSVRVVMFTAFEVQHRLSEAFAAGACSFLTKDLPVVEIVDSLLHIYSGHRVLAPRAMDFALDTLRSLGEQQERTEGWARTVDSLSIGQRAVYEWLIQGATNREIAELTNYSEGTVRTYVTQLLDCFGCSSRTELAVRAARIGSTPGC
>NZ_CP040505.1|WP_129583346.1|722655_722856_-|ribbon-helix-helix-protein,-CopG-family
MVTHGVTTGGRPNLGRARATGHGRSPRRQVRLPEDLNNRLDAYADAKDLTVSDVIRAALEAYLQPA
>NZ_CP040505.1|WP_131247141.1|722990_723278_-|hypothetical-protein
MAIRFTKSAGRHGVSQQEALHAVFHHVNAASIEGEPGEKTMVFVGLPHPQARRFIEVIASIRGSADIKIFHAMEVTDAWKHLVYEAGHTEWENES
>NZ_CP040505.1|WP_083879436.1|723306_723414_-|helix-turn-helix-domain-containing-protein
MVVLAQDLRRQGMSLARIGRILDCSTSTIRRAVGC

Crispr_ID: NZ_CP040505_23

• CRISPR_ID: NZ_CP040505_23
• CRISPR_location: 762899-762984
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers
• Cas_protein_info: DinG

Consensus repeat of NZ_CP040505_23

Consensus_repeat	Method
GCTCCTTCCGTACAATGACGGGGTG	CRISPRCasFinder

spacers of NZ_CP040505_23

>23.1|762924|36|NZ_CP040505|CRISPRCasFinder
GTGTCCTGTTCACCGCAGACCGGCTCAGCCGTGCCA

CRISPR arrays and Neighbor proteins around NZ_CP040505_23

CRISPR arrays

The CRISPR arrays of NZ_CP040505_23

>merge|NZ_CP040505|23|762899-762984|CRISPRCasFinder
GCTCCTTCCGTACAATGACGGGGTGGTGTCCTGTTCACCGCAGACCGGCTCAGCCGTGCCAGCTCCTTCCGTACAATGACGGGGTG

>NZ_CP040505|23|21|762899-762984|CRISPRCasFinder
GCTCCTTCCGTACAATGACGGGGTG	GTGTCCTGTTCACCGCAGACCGGCTCAGCCGTGCCA
GCTCCTTCCGTACAATGACGGGGTG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005961712.1|766818_768792_+|ATP-dependent-DNA-helicase	DinG	COG1199_DinG_CAS-IV-A	gnl|CDD|224120
NZ_CP040505.1|WP_040313479.1|764299_764917_-|methyltransferase	unknown	unknown	gnl|CDD|368316
NZ_CP040505.1|WP_005961697.1|772461_774270_-|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl|CDD|235531
NZ_CP040505.1|WP_005961731.1|752533_755431_+|DNA-translocase-FtsK	unknown	unknown	gnl|CDD|224588
NZ_CP040505.1|WP_005961691.1|778580_779738_+|PAC2-family-protein	unknown	unknown	gnl|CDD|378251
NZ_CP040505.1|WP_005961714.1|765164_766826_+|GTPase-HflX	unknown	unknown	gnl|CDD|274455
NZ_CP040505.1|WP_005961726.1|758196_758790_+|regulatory-protein-RecX	unknown	unknown	gnl|CDD|234646
NZ_CP040505.1|WP_005961728.1|756564_756798_+|DUF3046-domain-containing-protein	unknown	unknown	gnl|CDD|378612
NZ_CP040505.1|WP_040313481.1|757083_758190_+|recombinase-RecA	unknown	unknown	gnl|CDD|236476
NZ_CP040505.1|WP_005961708.1|770193_770901_-|transcriptional-repressor-LexA	unknown	unknown	gnl|CDD|234688
NZ_CP040505.1|WP_005961710.1|768984_769974_+|L-lactate-dehydrogenase	unknown	unknown	gnl|CDD|133428
NZ_CP040505.1|WP_005961725.1|759131_759626_+|CinA-family-protein	unknown	unknown	gnl|CDD|334938
NZ_CP040505.1|WP_005961720.1|762305_762752_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005961730.1|755451_756081_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl|CDD|273139
NZ_CP040505.1|WP_005961722.1|761755_762313_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005961695.1|774376_775582_-|phosphoglycerate-dehydrogenase	unknown	unknown	gnl|CDD|236985
NZ_CP040505.1|WP_005961729.1|756247_756562_+|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|238045
NZ_CP040505.1|WP_040313480.1|759636_761160_+|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl|CDD|237674
NZ_CP040505.1|WP_005961718.1|762987_764025_+|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl|CDD|234626
NZ_CP040505.1|WP_040313478.1|771089_771572_+|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl|CDD|366664

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP040505.1|WP_005961712.1|766818_768792_+|ATP-dependent-DNA-helicase	DinG	COG1199_DinG_CAS-IV-A	1.6e-111	368.3	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005961712.1|766818_768792_+|ATP-dependent-DNA-helicase	gnl|CDD|224120	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair].	5.4475e-122
NZ_CP040505.1|WP_040313479.1|764299_764917_-|methyltransferase	gnl|CDD|368316	pfam05175, MTS, Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases.	4.62896e-37
NZ_CP040505.1|WP_005961697.1|772461_774270_-|long-chain-fatty-acid--CoA-ligase	gnl|CDD|235531	PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.	0
NZ_CP040505.1|WP_005961731.1|752533_755431_+|DNA-translocase-FtsK	gnl|CDD|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	8.2501e-151
NZ_CP040505.1|WP_005961691.1|778580_779738_+|PAC2-family-protein	gnl|CDD|378251	pfam09754, PAC2, PAC2 family. This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits.	1.71144e-36
NZ_CP040505.1|WP_005961714.1|765164_766826_+|GTPase-HflX	gnl|CDD|274455	TIGR03156, GTP_HflX, GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). [Unknown function, General].	1.98987e-167
NZ_CP040505.1|WP_005961726.1|758196_758790_+|regulatory-protein-RecX	gnl|CDD|234646	PRK00117, recX, recombination regulator RecX; Reviewed.	5.68659e-27
NZ_CP040505.1|WP_005961728.1|756564_756798_+|DUF3046-domain-containing-protein	gnl|CDD|378612	pfam11248, DUF3046, Protein of unknown function (DUF3046). This family of proteins with unknown function appears to be restricted to Actinobacteria.	7.59129e-16
NZ_CP040505.1|WP_005961708.1|770193_770901_-|transcriptional-repressor-LexA	gnl|CDD|234688	PRK00215, PRK00215, transcriptional repressor LexA.	1.90724e-99
NZ_CP040505.1|WP_005961710.1|768984_769974_+|L-lactate-dehydrogenase	gnl|CDD|133428	cd05292, LDH_2, A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	4.63858e-156
NZ_CP040505.1|WP_005961725.1|759131_759626_+|CinA-family-protein	gnl|CDD|334938	pfam02464, CinA, Competence-damaged protein. CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation. This Pfam family consists of putative competence-damaged proteins from the cin operon. Some members of this family have nicotinamide mononucleotide (NMN) deamidase activity.	8.16527e-51
NZ_CP040505.1|WP_005961730.1|755451_756081_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl|CDD|273139	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. Alternate names: phosphatidylglycerophosphate synthase; glycerophosphate phosphatidyltransferase; PGP synthase. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharamyces cerevisiae YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. [Fatty acid and phospholipid metabolism, Biosynthesis].	9.09118e-35
NZ_CP040505.1|WP_040313481.1|757083_758190_+|recombinase-RecA	gnl|CDD|236476	PRK09354, recA, recombinase A; Provisional.	0
NZ_CP040505.1|WP_005961695.1|774376_775582_-|phosphoglycerate-dehydrogenase	gnl|CDD|236985	PRK11790, PRK11790, phosphoglycerate dehydrogenase.	0
NZ_CP040505.1|WP_005961729.1|756247_756562_+|helix-turn-helix-transcriptional-regulator	gnl|CDD|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	6.61234e-09
NZ_CP040505.1|WP_040313480.1|759636_761160_+|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl|CDD|237674	PRK14326, PRK14326, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
NZ_CP040505.1|WP_005961718.1|762987_764025_+|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl|CDD|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	4.4344e-115
NZ_CP040505.1|WP_040313478.1|771089_771572_+|LysM-peptidoglycan-binding-domain-containing-protein	gnl|CDD|366664	pfam01476, LysM, LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.	1.9781e-05

Protein sequences

>NZ_CP040505.1|WP_005961720.1|762305_762752_-|hypothetical-protein
MSSTSTDPITIERVAKALETIGLFPFLAGQTQIAAILPNRTIRIVLPEGSPAQGVAEYPRRFHACHRDTLSEVVRMFNATTYVPKATLVTTEEGMLSVRFFHCFNWVVGATDEQVKGEISQFILSCIAVQNRLDEQFVDPWAKEAPNA
>NZ_CP040505.1|WP_005961722.1|761755_762313_-|hypothetical-protein
MPEWKSWTFGGEDENGFALPTPTEDEPSAPAPAPGMEADAAAAKWGVEVEPVSIKRIEKVIEGDGLPHASDEFVAVTEVNGIRMQFHLEPADSPWLQLEAKLPLEDESPGLEVLGEIANTWNLDHLQPTVFPLSDESSHFFILATRFFVAEGLSDRQIHAMVRRGVSVTAQALQLLPTLVAEAGK
>NZ_CP040505.1|WP_040313480.1|759636_761160_+|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MNAETTTALPKTYAIRTLGCQMNVHDSERMAGLLEQEGLLPVSLVPAAAERATEAGDLGADVLVINTCSVRENAATKLFGNLGQLAAVKRERPGMQIAVGGCLAQQMREGIIEKAPWVDAVFGTHNIDVLPVLLKRAAHNHEAAVEIEESLKVFPSTLPTHRESAYAAWVSISVGCNNTCTFCIVPHLRGKERDRRPGEILDEINAVVSQGAIEVTLLGQNVNSYGVGFGERGAFAALLRQCGQIEGLERVRFTSPHPAAFTDDVIAAMAETPNVMPSLHMPLQSGSDAVLRQMRRSYRRERFMGILERVRASIPEAAITTDIIVGFPGETEEDFQQTLEVVEQARFSSAFTFLYSPRPGTPAADREDQIPAEVALDRYKRLIALQEGICTEDNVKLVGSSVEVLICESEGRKDGATHRVTGRARDNRLVHVALPENASKQDLPRPGDMVTARVTYGAPHHLIADSALEGGLWQLRRTRAGDAWEQRQAQEEDQRVSLGIPRIRVGR
>NZ_CP040505.1|WP_005961725.1|759131_759626_+|CinA-family-protein
MDDTHLIELLDTLAEAELTLALAESLTGGALCARLVDVPKASRVLRGGVCTYATPLKATLLGVDSTLLAEKGPVDAEVARQMAQGARRLMGAKLALSTTGVAGPGPAEGHEAGTVHIALAWSKGVVHRELHLTGDRAHIRSGTVNAALELLKETLESGGILDSH
>NZ_CP040505.1|WP_005961726.1|758196_758790_+|regulatory-protein-RecX
MVRYLDPEDHPEGAQTRRKSRLSPAERLQRLKERNSALEGAAAIEGARELALRLLDTRSRSTGELRQAIESKGFSAETAEEVITRLRRVGLIDDAAFARALVSDRFTGSGKVGRALVEEMRRKGLDPKTIEAAMETLEPDDLRQRALELARKRLRTMSQVPRDAAFRRLAGMLARKGYSPSICTAVVTQVLEEREEE
>NZ_CP040505.1|WP_040313481.1|757083_758190_+|recombinase-RecA
MAAASRKRTSERKAEDRKGDKRNKALELALSQIDKQFGKGSVMRLGDDTRPPVQVIPTGSLALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQKAGGNAAFIDAEHALDPVYAKALGVDIDNLLVSQPDTGEQALEIADMLIRSGGIDIIVIDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKITGALSATGTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEAGAPVANRTRAKVVKNKMAPPFKQAEFDIVYGKGISREGSIIDMGVEAGIIRKSGSWFTYGDDQLGQGKENVRQFLADNPELAKEIEDKILISLGIGEAPEAEPEPLPEVIDPSEDAGF
>NZ_CP040505.1|WP_005961728.1|756564_756798_+|DUF3046-domain-containing-protein
MKTSEFWDAVDSVFGPTLGRSYAADLYLPAISGTCLEALEAGLAPQRVWEALVDETGVGESCKWFHRLDAKAKRSLR
>NZ_CP040505.1|WP_005961729.1|756247_756562_+|helix-turn-helix-transcriptional-regulator
MNASAAPAPLLRTELGDVLRDLRRHQGRTLREISSDAQVSLGYLSEVERGQKEASSELLEAICLALGVPLWFVLREVSERMAVSSGIVVPDTVPEDLVPVTLIS
>NZ_CP040505.1|WP_005961730.1|755451_756081_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MHDNVSLVDREHSVSPYNLPNALTVIRLLLVPVFIWLMVSELPGARWWAVLVFMIAASTDQLDGHIARSRNLVTDFGKLVDPIADKALTLGAFVMLTVVGLLPWWVTALIAFRELGITWLRAILLKRGIVVAANKGGKLKTVLQMLAIWVLLIPWTTIEFGGEWSGLFAQGMLVFGWTVAGLALVVTLWSGWVYVAEGMRLKKDAKTQS
>NZ_CP040505.1|WP_005961731.1|752533_755431_+|DNA-translocase-FtsK
MASRTPSTGKTGRNPSGRPQSSKRQAAPQAPEPGLLARFFASIGRGVASLVRAWRAADPQMKRDALAFVCIAAALLVALREWFRISGQAGDFIHHAAAGSVGLFSVVVPLALIAFSIELFRARSGEQALPHHVAGGIGLVISLSGLVHVTQGNPSLEDVETIESAGGIVGWFVARPLTNLLSPWGAGAILVLVGIYSLLLATRTRVAEVPARLRELARRFKRRSTPGTTPENEDPARVARQRAREDLAAGDDPFLDEYDGDESFRSPNVSEDSTSVLGSASPARLRDAEPAPLHGEASSAANSGEVESAPQAQTGVLAHDMPTEKFSVVADPNTEAIPAPTSPEADEPAPAPITPAPEGEVFQPQLNEAISYTLPEDSLLVSGPPHKTRSVVNDQVVHALAQVFADFKIDAQVTGFSRGPTVTRYEVVLGSGVKVDKLTNLSKNIAYAVASADVRILAPIPGKSAIGIEIPNTDRENVALGDVLRSSAALRNQHPLVVGVGKDVEGGYVVTNLAKTPHLLVAGQTGSGKSSFVNSMITSIMMRATPQQVRMILVDPKRVELTIYEGIPHLISPIITDPKKAAEALEWVVREMDARYNDLSDYGFKHIDDFNKAVQSGQVLAKPGLDRVLRPYPYLLVVVDELADLMMVAPRDVEASIQRITQLARAAGIHLVLATQRPSVDVVTGLIKANIPSRLAFATSSLTDSRTILDQPGAEKLIGQGDALYLPAGASKPMRVQGAWVTESEIHRVVAHVKQQMQPHYRDDVVTETKSVKVAEDIGDDLDDLLQAAELVVSTQLGSTSMLQRKLRVGFARAGRLMDLLESREIVGPSEGSKARQVLVQPEQLPEVLAMLRGESDSMDAGGQAPATSPALAGDAFGSDNAGRGAVDASAASDMAGEAGAPASGAAQMVSSFVPDGASSQPGPYTPGDDVMQDPYAGHNFGGNPPQWVDEEPEEDEDAWQLTGR
>NZ_CP040505.1|WP_005961718.1|762987_764025_+|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MTADFTAPCAPTLQRPGDFVIAVVGPTASGKSDLALDLASALPEFLESGAGEIVSADAFQLYRGMDIGTAKTPLEERRGIPHHQIDVLNVKEEASVTRYQQAARADLADIRGRGGLSVVAGGSGLYQRALLDVIDFPGTDPRVRAALEAEAEGPSGSRGLHARLESLDPVSASRIDPRNTRRIIRALEVIELTGRPYSSHMPERLFQRPSIMLAIRHDLEVLDERIRIRTARMFTDGLIEETRELMKEGLEEGRTARRATGYAEAIAVVKGEMNEDEAQNCVELATRQLARRQIKWLRPDPRVFWLEADDPAPLKDRAIALVREAVDAAMERGAVEIAEGDARQE
>NZ_CP040505.1|WP_040313479.1|764299_764917_-|methyltransferase
MSEQYFSDQVPAADSDLRTITIEARGHEFSMRVSAKIFSASRLDLGTRQLLSEAPELPESGRFLDIGCGWGPIALTMAKDSPEAEVWAVDVNSRAVDLTARNASLNGCPNVRAMLEEDALAAVEAEDARFDVIWSNPPIRIGKEALHALLRRWCDRLTPGGVAYFVVQRNLGADSLIAWLNGQGYAAGKIASKKGFRIIEVRPGA
>NZ_CP040505.1|WP_005961714.1|765164_766826_+|GTPase-HflX
MDKPLEERELNDSLDEERAQSIVARILARRGTALESTEGQDHSWDAGMLEREARAGTRRIQSQRNDREDISEVEYRQIRLERVVLVGLRTTQSEEEVDTSLRELAALAETAGSQVLDAVVQKRVKPDPATYLGSGKAKELADIVRSVEADTVIVDEELTPSQRRGLEDVIDAKVVDRTALILDIFAQHAKSREGKAQVELAQLEYLLPRLRGWGESMSRQAGGRVAAGAGIGSRGPGETKIELDRRRIRTRMAKLREEIRKMEPARRTQRLSRRRGAVPSVAILGYTNAGKSTLLNQLTDAGVLVEDALFATLDPTVRRTETVDGRAYTLTDTVGFVRNLPTQLVEAFRSTLEEVGEADLLVHVVDAAHPDPVGQVEAVRLVLADIEGASSIPEIIVLNKADLASPEHLALVRTYFPEAVVVSANTGLGIDVLRHRIEEALPRPSLLIDCVIPYSRGDLVHTIHEEGEVEREEYVSEGTRVIARVNERLGAHIKEAGIVLIGVGGDSFAGAGSLEQALSIGAGSLEGTMPDKREGFEGAVPKRMESPKGSLDD
>NZ_CP040505.1|WP_005961712.1|766818_768792_+|ATP-dependent-DNA-helicase
MTEGPDPLDILSLVVESIGGSARPGQVEMVRRIASAIEDEGQLLVQAGTGTGKSIGYLVPLLAHCVTTEQKALVTTATLALQRQILSKDAPRVVEAIAEKTGIRPKVAVLKGWSNYLCLHRAQGGYPTEGTLFEGIETNTGKVSDLGTQVLRLREWASTTDTGDRDELVPGVSDKAWRQVSVSKRECLGSSCPLIEECFPKVAREKAGEADLIVTNHSLFGIHCTGEAEILPDFGPVVVDEAHELSERVRTQASQLLSQGIVTRIARTIRSQAKVDAEDLENAGTELAAVLAPLEDGLMLERPEALAETMRLIDDAARRAASAIQDSGAEQAGKVLARAALDEITGFVDTWSQDPKLTILSLSRSDQGSGELLSISPLEVAPPLGLKGFSDRPAILTSATLSLGGSFDAIARECGFMMTERPFEGIDVGTPFAPEKQAIMYIAKHLPEPGPGGLSPEAGKELVELAKASGGGMLGLFSSWKAAERAAQLLREHTDLTIYMQGDETLSALVDRFREEEDSCLIGTRSLWQGVDVVGGSCRLVVIDRIPFPHLNDAVAKARSIDAERKGFSGFHTVSLTQAALLMAQGAGRLLRSAQDRGVVAILDRRVLTKSYGSFIRQSMPKMWPTTDPQLVRAALKRLATSHEAASGGQRRGGEEA
>NZ_CP040505.1|WP_005961710.1|768984_769974_+|L-lactate-dehydrogenase
MAANAKSLYPSKSSGRPSKIAIVGAGAVGTAVAYACAMRGDARSIVLQDINKAKVEAEALDIAHGIQFTPCGSVEGSDDVEIVRGADLVIVTAGAKQKPGQSRLELAGSTVNLMKTIVPNLQNVAPDARFMFITNPVDVVTYVALKITGLPRNQVFGSGTVLDTSRLRYLVSRETGVATQNIHAYIAGEHGDSEVALWSSAEIGNVPLEHWGPTLDGGLFDAALRNRIAEEVVRSAYKIIDGKGATNYAIGLSASNIAGAVLRDENRVLTVSTLLEDWEGISDVCMAAPTIVGREGAGRVLNPPLTLKERDGLTASATRLRQVARDLGF
>NZ_CP040505.1|WP_005961708.1|770193_770901_-|transcriptional-repressor-LexA
MTETSPLSPRQRQILLVVHEEVRAHGFPPSVREIAARVGLASPSTVKHHLDALERSGYLQRVPGLPRALELSQSARVQLGVDSDSTEDHPESPLSARVVTIDLPAAHVDEERSSVPLVGRIAAGSPITAEQHIEDVFDLPTRLTGHGSLFMLEVSGESMIDAGILDGDFVVVRSQSSATPGEIVAAMIEGEATVKVLSKKDGHIWLLPCNEDYAPIPGDEATILGKVVTVLRSLV
>NZ_CP040505.1|WP_040313478.1|771089_771572_+|LysM-peptidoglycan-binding-domain-containing-protein
MSTQNSALRLERRHLVSVPPISGADVVEISTAPSVRRRREALLAEDPAMHRRPCASRLEGERDGALGAPFSLASVVRFALGLMAALALGVAGVGIGMLLSPGVYSGPTAVHGVVAGESIWSIAQGVNTDRPLEDVVTDIRALNDVEGALMVGQQIKVPIR
>NZ_CP040505.1|WP_005961697.1|772461_774270_-|long-chain-fatty-acid--CoA-ligase
MSLTDDLRRGYAPGVALEVSIPELTLPQMVEEVARRYPQRVALDFFSRSITYAQLVDRVRRAASVLARAGVAPGDRVALMMPNCPQHVIAILATMTLGGIVVEHNPLSPVLEIEKEFEAHGARVVIAWEKSIDKLAFLKDEATVFSVDLTRAMPGATQFLLRLPVKAAKEKRTALSAKPPTWTRSWDREVMQSPRWLNERPVSPDDLALLIHTGGTTGIPKGAALTHRNILANIAQSIAWVPVLHEGAEVFYCVLPLFHAFGFTIGLFAGLRLGASVALFPKFDTTMILTSQKRLPCTFFLGVPPMYERLLKTAETMDVDLSSMTFSLSGAMPLSGELAKRWEEATGGLMVEGYGMTEASPIILGSPLSDSRRPGALGIPFPSTQVRIVDPEDPGVDVPEGEIGELIVKGPQVFSGYWERPEETAEALWNGWLRTGDLVRVQDGFIHMADRRKEMINASGFNVYPSQVEDAVRDMPGVRDIAVIGLPAGSAGENVVAAIVLEAGASITLTDVRQWAEKSIAHYALPRQIVVMTELPRSQLGKVMRKKVREQILDTADSVLTAAGQVRNAADQMRSAADQVRSAADSAAASAAAKLRSLKNRE
>NZ_CP040505.1|WP_005961695.1|774376_775582_-|phosphoglycerate-dehydrogenase
MTRALLLENPHKTADEVFVKNGIEVVRNPGALDEAELIHALQGVDYLGLRSKTSVTREVLEANPQLKAIGAFCIGTNQIDLEAATELGICVFNAPYSNTRSVVELAIGEIIDLCRRVTVKNSRLHRGIWDKSADGAHEVRGRTLGIIGYGNIGTQLSVLAEAMGLNVIFYDVAERLALGNATQMPTMESVLREADIVSVHVDGQLVNANLFGAREFAMMKPGALFINLSRGFIVDIDALHDALVLGHLAGAAVDVFPEEPNKNGDPFTSPLAKLDNVILTPHIGGSTEEAQYDIGRFVASKIADYENTGSTDMSVNLPNLQLSASEESRYRIALIHRNTPGVLATVNNTFAQTGANIGAQILGTAGQTGYVLTDINSELPVEAIEKIRSMKDTIRLITTRL
>NZ_CP040505.1|WP_005961691.1|778580_779738_+|PAC2-family-protein
MRSTDEDLFWRGDVEDTKARILVAQFNGAFDAGGAARLAVEEMLRSLPTERVATFDTDAFLDYRSHRPFATVSDWVLESVEMPELVLDRVKDDLGNPVLVLHGAEPDAKWESFSRIVTELATRAGVEIVVSFNGMPSGVPHTRPTPVHVQATEKALIPEQPQMAATLRFPTPMTTFLQERLANQGIPGIVFLAAIPFYVADAAYPAGASALLSALSDLADLSLPVGELEQDAAEEHTAIERILESNSEMQRTVAALEEHFDALSGAGKDGVPPGEWAERTPLRSERKTEKDIGDVIEAYLANLAEQPEKDEAEEAQAEEESDPLQAALRRVELRRLNPNAPRNVGRPRHSAQPESDESAASSSAGPSAQGESASGEQNSGEESSH

Crispr_ID: NZ_CP040505_24

• CRISPR_ID: NZ_CP040505_24
• CRISPR_location: 972312-972403
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP040505_24

Consensus_repeat	Method
CGTCCTACCCGTTCCCGCAAGGAGAATCGGG	CRISPRCasFinder

spacers of NZ_CP040505_24

>24.1|972343|30|NZ_CP040505|CRISPRCasFinder
AGTCCGCCGAATGACCACCCCGCGCCACGC

CRISPR arrays and Neighbor proteins around NZ_CP040505_24

CRISPR arrays

The CRISPR arrays of NZ_CP040505_24

>merge|NZ_CP040505|24|972312-972403|CRISPRCasFinder
CGTCCTACCCGTTCCCGCAAGGAGAATCGGGAGTCCGCCGAATGACCACCCCGCGCCACGCCGTCCTCCCCGTTCCCGCAAGGAGAATCGGG

>NZ_CP040505|24|22|972312-972403|CRISPRCasFinder
CGTCCTACCCGTTCCCGCAAGGAGAATCGGG	AGTCCGCCGAATGACCACCCCGCGCCACGC
CGTCCTCCCCGTTCCCGCAAGGAGAATCGGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005963589.1|964741_965434_-|DUF4191-domain-containing-protein	unknown	unknown	gnl|CDD|379389
NZ_CP040505.1|WP_131247373.1|984216_984648_+|MarR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|197670
NZ_CP040505.1|WP_005963602.1|974385_975999_+|DNA-polymerase-Y-family-protein	unknown	unknown	gnl|CDD|176458
NZ_CP040505.1|WP_005963611.1|984897_985650_+|hypothetical-protein	unknown	unknown	gnl|CDD|239322
NZ_CP040505.1|WP_005963592.1|968465_970244_-|2-oxoglutarate-dehydrogenase,-E2-component,-dihydrolipoamide-succinyltransferase	unknown	unknown	gnl|CDD|200219
NZ_CP040505.1|WP_005963601.1|973915_974389_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005963585.1|962523_963432_-|amino-acid-ABC-transporter-permease	unknown	unknown	gnl|CDD|223836
NZ_CP040505.1|WP_005963604.1|976070_979187_+|DEAD/DEAH-box-helicase	unknown	unknown	gnl|CDD|350770
NZ_CP040505.1|WP_005963587.1|963491_964427_-|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|270225
NZ_CP040505.1|WP_005963598.1|972493_972955_-|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl|CDD|349967
NZ_CP040505.1|WP_005963613.1|985652_986693_+|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|379112
NZ_CP040505.1|WP_005963599.1|973018_973552_-|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	unknown	unknown	gnl|CDD|176643
NZ_CP040505.1|WP_005963579.1|961332_961521_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_131247323.1|979394_983126_+|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl|CDD|235553
NZ_CP040505.1|WP_005963591.1|965544_966825_+|protein-kinase	unknown	unknown	gnl|CDD|270916
NZ_CP040505.1|WP_005963578.1|961091_961283_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_040314121.1|970269_971643_-|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl|CDD|235798
NZ_CP040505.1|WP_005963582.1|961546_961729_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005963584.1|961753_962509_-|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224051
NZ_CP040505.1|WP_040314122.1|983378_984044_-|HAD-hydrolase-like-protein	unknown	unknown	gnl|CDD|319798

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005963589.1|964741_965434_-|DUF4191-domain-containing-protein	gnl|CDD|379389	pfam13829, DUF4191, Domain of unknown function (DUF4191).	1.12854e-86
NZ_CP040505.1|WP_131247373.1|984216_984648_+|MarR-family-transcriptional-regulator	gnl|CDD|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.19197e-17
NZ_CP040505.1|WP_005963611.1|984897_985650_+|hypothetical-protein	gnl|CDD|239322	cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.	3.61487e-43
NZ_CP040505.1|WP_005963592.1|968465_970244_-|2-oxoglutarate-dehydrogenase,-E2-component,-dihydrolipoamide-succinyltransferase	gnl|CDD|200219	TIGR02927, putative_dihydrolipoamide_acyltransferase, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).	0
NZ_CP040505.1|WP_005963585.1|962523_963432_-|amino-acid-ABC-transporter-permease	gnl|CDD|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	1.21044e-72
NZ_CP040505.1|WP_005963604.1|976070_979187_+|DEAD/DEAH-box-helicase	gnl|CDD|350770	cd18012, DEXQc_arch_SWI2_SNF2, DEAQ-box helicase domain of archaeal and bacterial SNF2-related proteins. Proteins belonging to SNF2 family of DNA dependent ATPases are important members of the chromatin remodeling complexes that are implicated in epigenetic control of gene expression. The Snf2 family comprises a large group of ATP-hydrolyzing proteins that are ubiquitous in eukaryotes, but also present in eubacteria and archaea. Archaeal SWI2 and SNF2 are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.07993e-91
NZ_CP040505.1|WP_005963587.1|963491_964427_-|ABC-transporter-substrate-binding-protein	gnl|CDD|270225	cd01004, PBP2_MidA_like, Mimosine binding domain of ABC-type transporter MidA and similar proteins; the type 2 periplasmic binding protein fold. This subgroup includes the periplasmic binding component of ABC transporter involved in uptake of mimosine MidA and its similar proteins. This periplasmic binding domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.80876e-61
NZ_CP040505.1|WP_005963598.1|972493_972955_-|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl|CDD|349967	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL. tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	1.2237e-67
NZ_CP040505.1|WP_005963613.1|985652_986693_+|GNAT-family-N-acetyltransferase	gnl|CDD|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.91603e-25
NZ_CP040505.1|WP_005963599.1|973018_973552_-|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	gnl|CDD|176643	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.	2.65303e-48
NZ_CP040505.1|WP_131247323.1|979394_983126_+|DNA-polymerase-III-subunit-alpha	gnl|CDD|235553	PRK05672, dnaE2, error-prone DNA polymerase; Validated.	4.11395e-177
NZ_CP040505.1|WP_005963591.1|965544_966825_+|protein-kinase	gnl|CDD|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	2.69724e-12
NZ_CP040505.1|WP_005963602.1|974385_975999_+|DNA-polymerase-Y-family-protein	gnl|CDD|176458	cd03468, PolY_like, DNA Polymerase Y-family. Y-family DNA polymerases are a specialized subset of polymerases that facilitate translesion synthesis (TLS), a process that allows the bypass of a variety of DNA lesions. Unlike replicative polymerases, TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. The active sites of TLS polymerases are large and flexible to allow the accomodation of distorted bases. Expression of Y-family polymerases is often induced by DNA damage and is believed to be highly regulated. TLS is likely induced by the monoubiquitination of the replication clamp PCNA, which provides a scaffold for TLS polymerases to bind in order to access the lesion. Because of their high error rates, TLS polymerases are potential targets for cancer treatment and prevention.	3.51527e-30
NZ_CP040505.1|WP_040314121.1|970269_971643_-|dihydrolipoyl-dehydrogenase	gnl|CDD|235798	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_CP040505.1|WP_005963584.1|961753_962509_-|amino-acid-ABC-transporter-ATP-binding-protein	gnl|CDD|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	5.77699e-152
NZ_CP040505.1|WP_040314122.1|983378_984044_-|HAD-hydrolase-like-protein	gnl|CDD|319798	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065. 5'-nucleotidases dephosphorylate nucleoside 5'-monophosphates to nucleosides and inorganic phosphate. Purified Pseudomonas aeruginosa PA0065 displayed high activity toward 5'-UMP and 5'-IMP, significant activity against 5'-XMP and 5'-TMP, and low activity against 5'-CMP. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	6.7491e-52

Protein sequences

>NZ_CP040505.1|WP_040314121.1|970269_971643_-|dihydrolipoyl-dehydrogenase
MTEAEYDIVILGAGSGGYATALRAAQLGMKVALVEGDKVGGTCLHRGCIPTKAYLHAAETADTVRESEAFGILSSFQGIDMAKVGAYRDSVITKLYKGLQGLLSSRKVEIVSGWGRLVSENSVEVNGRVLTGRNIVLATGSYSRSLPGLEIGGRVISSDQALQMDWVPRSAVILGGGVIGLEFASVWRSFGAEVTIIEALPHLANNEDEAVSKQLERAYRKRGIAFHTNTRFSGATQDENGVHVSTETGKTFDADILLVAVGRGPVTQGLGYEEAGIRMDRGFVLVDERLRTGVGSIRAVGDIVPGLQLAHRGFLQGIFVAEDIAGLNPAVIDESGIPRVTFCEPEIASVGLTERAAREKYGDAVRTVEYNLAGNGKSNILGTAGFIKLVSVENGPIVGFHGIGSRIGEQIGEGELMVNWEAYPSDVASLIHAHPSQNESIGEAAMALAGKPLHAHN
>NZ_CP040505.1|WP_005963592.1|968465_970244_-|2-oxoglutarate-dehydrogenase,-E2-component,-dihydrolipoamide-succinyltransferase
MATDVLMPALGESVTEGTVTTWLKSVGDTVDVDEPIVEVSTDKVDSEVPSPVAGVLLQIVVPEDETVEVGTVIARIGDASEAPAPAAPEAAPAVPEAPAAPAPAAPAAPTPTPAPAAPAGGVEGTEVLMPALGESVTEGTVTTWLKAVGDPVEADEPLLEVSTDKVDSEVPSPVSGFLAEIRVDEDETVEVGTVVAIISASAPSAAAPAAVAAPAPAPVAPAPAAPAPAAPAPAPVAPASAAPAAPASAPAAPAAPASAPVAPAPAVPAPAAPAPQGLSAATTSGYLTPIVRKLAREAGIDLSTVTGTGVGGRIRREDVEAAVKAREAAKASSVQPVAAPSAPAHSAQLREPSPLRGTSEKMSRLRQTIARRMVESLQTAAQLTTVIEVDVTKVAALRARSKDAFLATHNTKLTFLPFFVKAATEALQYHPKINARIDEKEVTYFDHENIGIAVDTPRGLLVPVIANAGAKDIPGLAASINDLAARTRDSKIGPDELSGSTFTITNTGSAGALFDTPVLNMPETAIMGVGAIVKRPMVVKTADGSESIAIRSMVYVSLSYDHRLVDGADASRYLMDVKKRLEEGDFEADLSL
>NZ_CP040505.1|WP_005963591.1|965544_966825_+|protein-kinase
MKIEGYELGGIVHMSALGPLWAATSSSGESVLISVYSSAFGESTLERWRAWSTITSPCVARLVDVVRHEDGRWALIQERVDGRPLDLLLGSDQLRPRGVREKIIEDLRCGVRALHAAGIVHGDLAPANIIVNGEKAVIVDLAVPVNEGEGSVGWSVSSHKTCESDWEALERIEKALETSAPSQERSSTAAAAKKGAVHELEADGLHRRKEGGLEDTREGIRSKKRAPQAAVLTTDEDAGSRLRVAAAREETMRIPVRHRRKIAPLGLLVLAAGVGLGVGLGMIVLSSSSPSTALSAESGLVCPSQEEAASALHRALEQRDHALESRDPLGLEEVIGGALLEQDRARIEAVKSSGMRFEALKTRIEVLADPSCDEGVVVVRVRLGEQSARVCEAEQCQELSGGEEFLFDLVASYPEWIWTQARAVEE
>NZ_CP040505.1|WP_005963589.1|964741_965434_-|DUF4191-domain-containing-protein
MSENNTPKKRRWYHNLADAYRITKRTYPWIAWLLVGSAILTLCLALVIAALTNGNWILWTILGIALGATVAMTVLSLLVRRAMYAQIDGTVGSVYAVLSQIKSGWIISEEPVNVTREQDVIWRLIGRPGVVFISEGPSNRVQPLLSAERKKVSRVIKNVPVHVIQVGHDEGQIELAKLEGRLRKLKKVLTKEEVPAVSARLKALGSRGLPIPKGVDPTKVRPNRRAMRGR
>NZ_CP040505.1|WP_005963587.1|963491_964427_-|ABC-transporter-substrate-binding-protein
MRTLPAAIALAASAALLLGACSDPSPSTSNSADSTSTATTAAITPFDVTTIPVSEEVAALVPQAVKDRGVLRNGASTDYAPGEYLAEDGQTPVGYDVDIVKALAQAMGLKNGTTETAIFDTILPALGTKFDIGASSFTITAEREEAANLISYVQVGSAYAVAKGNPKGFNPADPCGTTIGVQNGTFQHEYAEKLSQECVDAGKEKIQVMPLDLQTDVSVKVIGGQYDATLADSTVIGFTISLAEGQLEQVGEVLEAAPQGIAVAKNDTELALAVQAAMQYLIDEGYLEKILEPYGSQDAALKTAELNPAAL
>NZ_CP040505.1|WP_005963585.1|962523_963432_-|amino-acid-ABC-transporter-permease
MAHIKDGVELIDAKPVPRPGRWASAIIVALFALLLAHALVTNPNFQWGVVWQWLFSKTIVSGVMYTLLLTVIAMVMGTILAITMAIMRQSVNPVLRWVATAYIWFFRGTPIYTQLIFWSLLPSLYPQMSLGIPFAPPFVTVDTATYFTSFWMAFIGLGLNEGAYLAEIIRAGLLSVDKGQWEAATALGMPRSMIFRRIILPQAMRVIVPPIGNETISMLKTTSLVSAIPYTLELTFVASTKGQNLFKPVPLLITAALWYLFITTILMWVQSHIERHFGKGFERREDTNAEKTTNTQFLDVTP
>NZ_CP040505.1|WP_005963584.1|961753_962509_-|amino-acid-ABC-transporter-ATP-binding-protein
MVSVRGVHKFFGNLHVLRGIDLDIAPGEVCVILGPSGSGKSTLLRCLNQLEEINAGRVSVEGELLGYREGAKGQLYELPDKVIASQRSRIGMVFQRFNLFPHKTALENVMEAPVRVAKVEKATAKARALELLERVGLADRADHYPSELSGGQQQRVAIARALAMDPEIMLFDEPTSALDPELVGEVLQVMKDLAASGMTMAVVTHEIGFAREVADTVVFMDEGQIVEMGSPAQVIDNPQEERTREFFSKVL
>NZ_CP040505.1|WP_005963582.1|961546_961729_+|hypothetical-protein
MEVRNSKLLADRQVLEEMGKSVSQIPALSENYFIQLRCEGGKELIEVSAPLLDPDRVLEE
>NZ_CP040505.1|WP_005963579.1|961332_961521_+|hypothetical-protein
MWIICGGEQRISWYFTVENVSDQTFEAFHSLSVPDPALDPYPASGVVIPDDPKGFLVVPEGI
>NZ_CP040505.1|WP_005963578.1|961091_961283_-|hypothetical-protein
MEIIAWVVIVLIGIVGLGIWWHFSLRRRIDARMHEAQPEERQALMDIQRDIDRGKAARQGFFF
>NZ_CP040505.1|WP_005963598.1|972493_972955_-|tRNA-(cytidine(34)-2'-O)-methyltransferase
MLHLVFFEPEIPGNSGAAIRLSACTGAMLHLVEPLGFDMDDAKLRRAGLDYHDLAHVVVHPDLDSALAKVPGKVWAFTGHAKHMFTDVEYSDGDGLLFGRESVGLSEEALSHPRVNAHVRIHMTEGVRSLNLANSASIALYHAWGSLGFPGGV
>NZ_CP040505.1|WP_005963599.1|973018_973552_-|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein
MDLLNRPIAPDPYDSLPPVPSFTVTSHELVDGAPMPHSATEAGGSISPQLHWEGFPPETRSFALTCFDPDAPTPSGWWHWMILDLAPEQTSLSQGAGKSDLELDGAAFHIRVDHGGSDYFGAAPPKGDRPHRYIFAIHALDLDTLGLDDEATPAACAAQMLSHTIARARITVTHEIP
>NZ_CP040505.1|WP_005963601.1|973915_974389_+|hypothetical-protein
MESAAQRLRRAREALRVAEYGSGLTRSPSLGEKSGAIHHVEGGRAALINALIDLLPARGWAGLLGVADFGWEAAARAGLDLERVLTIPDPKEEPARIAALLIESFDVVCIGEGLLNLRERRTLAAKARSCQCTILVDQAWTGISRPYGLSPSQAVAS
>NZ_CP040505.1|WP_005963602.1|974385_975999_+|DNA-polymerase-Y-family-protein
MRRLSLWIPDWPLASLVLDLPPGSAGAVARKEKIECASMLARKAGVRAGMRVITAQYLCPELIILPRDEDREGRTFETVLEAFDSVVAGVVSLRPGVAWAPARGAARWHGGEEKAARALVEAISDLTGLEAFVGIAEGPLASFAAAKLHRIIPPQENLEFLGARPLGECLPFLPPRLQEEGKEGILLLHDLGIRTCGELLNLGRGQLLARFGAIAEPLITLASGGEVALRPPERIVQDRSVEIEIDEAAHSIDQILLSVRRAAIELAEGLTDAGLQADTLGVSIEAAGERARCRRWQGVDLLDPDSIIERVRWQLKGWAELLGTQEGPSGGATAVILTALSPYTGAPSIPLWGKDNERARIERTAERLQSLLGIEGVRVPRLQGGWDPRTRVQLLTWADVEQSLTSREALTPREGEWEGSVDSAPATLLDSPVPVELLSIEGEAISVNSRGVISSQPRFLRLKREGKKIAQSLRSIFATGRTLDVKKRAGPWMIRGRWWDQDELHGPRVYLRLGAEHSPDFLLVNREGQWMIEGIYD
>NZ_CP040505.1|WP_005963604.1|976070_979187_+|DEAD/DEAH-box-helicase
MLISEESALLLLDLDEDALMARLGPATWAQGAGALRAGKVSSIENDEPEVYVGRVKDRGLSYKTWVSLLGGNISLSCACPEGVDCFHSAALLQALRSQAQAQTRTQSPWRARLVSLVGEPTRKGEPLALLVDASDPNRPILLEPLRRGRSVPWTRKRASWPDLVSTQWESVTEGIDPVHLGLIREGYLLSRSDSSWQSRQEVSLASLGDKGFDWLRRLEKDGVLLLHSLDPIEPLVLDPSTWDLGLDLRMEEEALSLGVIARNGELSVVRPHIEAATRLLVLDGGRRFARLAPSDLLQEIPGRGVKIPAEDIAEFRAEFLPRLSRRYSIVSSDSSIDFDSAPRVRLVATVRMETGENIVVRWWAEFDYTGTPSRLPLSRAMDDPQVKRIAERIDARGTALVSEGLWAKGPSSLRLPAWRAEELREKLVARITDPELEWDLSEEVAGLVLDESPARIHADIDPLDSDWFGLRISLEVEGVEVPLAEVLEALGAGEEHLCVAGRWVSLDGPKLRRLAALLEEARLLGDDPQARLNRLHVGLWEQIEEDADVLGAPGEWRKRLSAFDATPEELPIVHPACVTLRPYQLEGIDWLTTRAGAGFGGILADDMGLGKTLQVLTLIATLKGSGRVHAPILVVAPTSVLSTWKSEAARFFPELIVEVVAETARRRGMDLPSIITGADLVITSYTIARLDAEEWEAQEFGGLVIDEAQAAKNPRTAIHKVLREITTPWVFAVTGTPVENSLTDLWAILTLTTPGLLPGWKTFTEKIRRPIETEGDEAALERLHRLIAPFMLRRTKEGVAEDLPDKIESVLRIDLGAEHRRIYEQYLMRERAKILSLVDDAKSRIDLLASITRLRQLALDPALVVEDYASIGSTKVEYLADQLDEIIPRGHRALVFSQFTSFLARIRLFLERRGVRVVQLDGTTRDRDGVIEEFRSGEAPVFLISLKAGGTGLTLTEADYVYVMDPWWNPAAEEQAVDRAHRIGQKKKVNVYRLVAADTIEDRVVALQERKRRLVTSVVEEAGQASGFKPADIASLLE
>NZ_CP040505.1|WP_131247323.1|979394_983126_+|DNA-polymerase-III-subunit-alpha
MGVIHNAPAAYAELHAHSAFTLLEGADSPAALVEAAVKLGLEGLGILDIDGMHSAIQTTTAGRRLGMPIIHGAELSLEPTGLLEAERDAVNPGWGLARGAEDPGIRLPILVSSPQGYTTLSSTMSAHALARPGVRKAAHLISELADAKKDWLILSGTRRGPLRRALHSGGIEGARRMRDFLIDAFGEEHLLIESALTPTDDPQLGDVLALLAQERGLRLLATGAVRCATPRSQGLADVLSAIRIGEPLGRVEPHLGAFPPFLRSAQEMLRIHHRNPQAVSQAAHIGGEIAFDLRLLAPRLPRTHIPEGYSNASWLAELTRRGALERYGTREKHPRAWETIDHELEVIETLGFPGYFLIVKEIVDFCQERGILCQGRGSAANSAVCYALGITAVDAIRHRLLFERFLSTGRSSPPDIDVDIEAGRREEVIQHVYEFYGRERAAQVANVITYRPRSAMRDAARALGYPAGLAAAWSKGISRHSFASLEENRAKGSGRGKKEDEDGAERNTGEGRAGKKDEDGPGRKDEGGEGKSARDRRPGRKDWDGVGGSAKEDRPGRKRRETRGNRAEKGEDNLGAPPLVVSVASALHKLPRHMGIHSGGMVLSDQPVSGICPIVWAAKEGRSVLQWDKEDCADAGLVKFDLLGLGMLSALRIAFERLRERGVLGRNGSPLGLHNLPEEDPRVYELLCAADTVGVFQVESRAQMNTLPRLAPRCFYDIVVEVALIRPGPIQGRAVNPYLRRRRGREEVSYLHPLMRPALEKTLGVPLFQEQLMQIAIDVAGFTPAQADRLRRAMGAKRSPELMEELRGPLMEGMKARGVEEQAREGIFTQLKGFADFGFPESHAFSFAHIVYASAWLKVHHPEEFYAAILAAQPMGFYSPASLVHDARRHELSVLAPDVNASELEASVEFSANSDPRARTGVGGEEGHCAKATPSAPMSPQRGRSDQRGSCTHRGIGTHRGTGREKGISPERGISLERGRDIDTAGWLRSEKTEAPPPSTAPIRLDTTPGAHVRLGLNDISGLGADAEAILEARREGPFTSVEDLVIRAQLDEPSIVRLAKAGALSSLGISRREGVWAAGALGVSSWIQPCLPGTQVGAKAPLLPEMNEEEALISDYQSMGLSPQRHPFELLRDELAERGVLAAQQVGAEHCGEVICVAGIVTHRQRPHTAQGIIFLSLEDETGIVNISCSPDMWNAHKGIALGSKALEIRGRVEYGDGAVSITAHRMKAIALPVHTSSRDFR
>NZ_CP040505.1|WP_040314122.1|983378_984044_-|HAD-hydrolase-like-protein
MSSHSRWSSVLFDIDGTLVDSASVVTKVFGIVLSSRGFPVPEESALMKYVGPPLWWSFTDLGFEGDLVEELVTSYRRTYIEFYLEPLPFPGITELIPLLHAAGFPLATATSKQQPMALAQITHLGLEDSFDVVAGATPGRDSTKASVIADALSRLEAQGHDVSRPVLIGDSIWDVEGAALAQIDVIGVSWGYAQPGDLDSCTARVSSPQELAELLGLSEPV
>NZ_CP040505.1|WP_131247373.1|984216_984648_+|MarR-family-transcriptional-regulator
MCAWRIFFEASARLQGILENRLKRQFGLTLSDYNVLLALWESPHHALRMGELAQRVIFSPSRLTYITTHLERDGWIEKTSVKEDRRSSCACLTSQGEEVVKKANALHQGMIREYLLEGFNEEEICDIVRIVQGFGDKLSKIRA
>NZ_CP040505.1|WP_005963611.1|984897_985650_+|hypothetical-protein
MRARGFSSGLSCYVHSLLSQGGTLVHIDVWAELSCPWCYLGIRHLRRALAEFPHATQVEVCLHAFLLEAELDHALDVPRKVHRIEDLGESLDEVLAEDARLEKLGRAEGIVFDFDHAIVAPTTSAHRAVAAATDFDLVNDTSCGADTSALKLAEAIGRAYFEMALDISDPDVLIGCAQDIGMPAEYVVEALASSEYASRVFSDFQIGIQMGIGCLPTYLFDRRFVVEDHQTVTALSNILATAYENSGKDL
>NZ_CP040505.1|WP_005963613.1|985652_986693_+|GNAT-family-N-acetyltransferase
MPQEEPRLIGETLILTPITSKDAKELCECLQDPRISETTSVPFPYTLDMARENLAESEEKWAKGSADFAIRSAADSALLGRIELIRSPRTPEACEIAFFIRQDQWGKGFMTEAVGLALDYAFGHMRVERVEWRAQVGNWGSWKPVWRNGFTREGVRRCLKGPDQWTAALLKTDPRKPVAPWDGPGAGRGPALDPSQPQKLVEQFHRTYSMPVRLGTGNAPTIDYERIHMRMSLIQEEFAELMGAVYGAAARSIVEVASEQAVDSDDCTRDLIETADALADLVYVIYGMAIESGIDLDKVLAEVQASNLSKLMPDGSVKLREDGKVLKGPGFFAPNIRRALGLDAEN

Crispr_ID: NZ_CP040505_25

• CRISPR_ID: NZ_CP040505_25
• CRISPR_location: 1047497-1048908
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 19 spacers

Consensus repeat of NZ_CP040505_25

Consensus_repeat	Method
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CRISPRCasFinder
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CRT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	PILER-CR

spacers of NZ_CP040505_25

>25.1|1047534|34|NZ_CP040505|CRISPRCasFinder,CRT
CCGTCATGACTGAATGGAATCACATCAGCGAGTC
>25.2|1047605|37|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
GAACATCATCTCTGATCTTCAGCACTTTTCTCGCCGC
>25.3|1047679|30|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
CGGCCAACGGCGTTGAGGGTGTGCGCATAA
>25.4|1047746|36|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
GAACAAATGGAACTCACAAAAGAGAATCTGGAAAGC
>25.5|1047819|36|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
AAGAGGATGAAGAAAAAAGGTACCATGTTAAGAAAA
>25.6|1047892|37|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
TGCGTAGTATTGCTAGCTAGTGGACATTTTTTCTTGG
>25.7|1047966|38|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
ACACGCCCACGGGAGGCGGTCAGTGACCCCAGAGGTAA
>25.8|1048041|36|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
AATCGTGGAGGAAAACCCTTGATAAGTGTGGAGTGC
>25.9|1048114|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
GAAGGTAAAGTTCACTCTTAGTAATAGCCAGGC
>25.10|1048184|35|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
AAAACAGCGCTGGCTGCGATGGAAGGAGCATGGGA
>25.11|1048256|36|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
GCGGGATCCTTGGTGAGGTCGTTCTCCTCACCGAGG
>25.12|1048329|37|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
TCGCGACACATGTCAACGAGTGCAAGACTTCGAGGTC
>25.13|1048403|35|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
AAAAGTGTTGAGCGCGCGTAGAGTACCTTACGCAT
>25.14|1048475|37|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
AAGAGAAAAAGACAGACGCAACGCTGTCCGATGTCGT
>25.15|1048549|34|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
GAAACATGGACTCCCACAAGCCGGACCGGGTGCC
>25.16|1048620|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
TTTTGGAGGCGGCTGGGGAGACGCTGGGTTCGG
>25.17|1048690|35|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
GTGTGCGGGTGGCATCAGCTCATCCGAGACATTGA
>25.18|1048762|35|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
GTATGGGTATCGCATGGGAACTTGTCCGCCTGAGG
>25.19|1048834|38|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
GCCAGCTCCAGGGAGGAGCTGGTGGATTTCTTCTCCGA

CRISPR arrays and Neighbor proteins around NZ_CP040505_25

CRISPR arrays

The CRISPR arrays of NZ_CP040505_25

>merge|NZ_CP040505|25|1047497-1048908|CRISPRCasFinder,CRT,PILER-CR
GTCCAAATGCACCTTATGGCGCGAGGTGCTTTCTGACCCGTCATGACTGAATGGAATCACATCAGCGAGTCGTCTTAATGCACCTTATGACGCGAGGTGCTTTCTGACGAACATCATCTCTGATCTTCAGCACTTTTCTCGCCGCGTCTTAATGCACCTTATGGTGCGAGGTGCTTTCTGACCGGCCAACGGCGTTGAGGGTGTGCGCATAAGTCTTAATGCACCTTATGGTGCGAGGTGCTTTCTGACGAACAAATGGAACTCACAAAAGAGAATCTGGAAAGCGTCTTAATGCACCTTATGGTGCGAGGTGCTTTCTGACAAGAGGATGAAGAAAAAAGGTACCATGTTAAGAAAAGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACTGCGTAGTATTGCTAGCTAGTGGACATTTTTTCTTGGGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACACACGCCCACGGGAGGCGGTCAGTGACCCCAGAGGTAAGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACAATCGTGGAGGAAAACCCTTGATAAGTGTGGAGTGCGTCTTAATGCACCTTATAACGCGAGGTGCTTTCTGACGAAGGTAAAGTTCACTCTTAGTAATAGCCAGGCGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACAAAACAGCGCTGGCTGCGATGGAAGGAGCATGGGAGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGCGGGATCCTTGGTGAGGTCGTTCTCCTCACCGAGGGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACTCGCGACACATGTCAACGAGTGCAAGACTTCGAGGTCGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACAAAAGTGTTGAGCGCGCGTAGAGTACCTTACGCATGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACAAGAGAAAAAGACAGACGCAACGCTGTCCGATGTCGTGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGAAACATGGACTCCCACAAGCCGGACCGGGTGCCGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACTTTTGGAGGCGGCTGGGGAGACGCTGGGTTCGGGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGTGTGCGGGTGGCATCAGCTCATCCGAGACATTGAGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGTATGGGTATCGCATGGGAACTTGTCCGCCTGAGGGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGACGCCAGCTCCAGGGAGGAGCTGGTGGATTTCTTCTCCGAGTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC

>NZ_CP040505|25|23|1047497-1048908|CRISPRCasFinder
GTCCAAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CCGTCATGACTGAATGGAATCACATCAGCGAGTC
GTCTTAATGCACCTTATGACGCGAGGTGCTTTCTGAC	GAACATCATCTCTGATCTTCAGCACTTTTCTCGCCGC
GTCTTAATGCACCTTATGGTGCGAGGTGCTTTCTGAC	CGGCCAACGGCGTTGAGGGTGTGCGCATAA
GTCTTAATGCACCTTATGGTGCGAGGTGCTTTCTGAC	GAACAAATGGAACTCACAAAAGAGAATCTGGAAAGC
GTCTTAATGCACCTTATGGTGCGAGGTGCTTTCTGAC	AAGAGGATGAAGAAAAAAGGTACCATGTTAAGAAAA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TGCGTAGTATTGCTAGCTAGTGGACATTTTTTCTTGG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	ACACGCCCACGGGAGGCGGTCAGTGACCCCAGAGGTAA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	AATCGTGGAGGAAAACCCTTGATAAGTGTGGAGTGC
GTCTTAATGCACCTTATAACGCGAGGTGCTTTCTGAC	GAAGGTAAAGTTCACTCTTAGTAATAGCCAGGC
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	AAAACAGCGCTGGCTGCGATGGAAGGAGCATGGGA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GCGGGATCCTTGGTGAGGTCGTTCTCCTCACCGAGG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TCGCGACACATGTCAACGAGTGCAAGACTTCGAGGTC
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	AAAAGTGTTGAGCGCGCGTAGAGTACCTTACGCAT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	AAGAGAAAAAGACAGACGCAACGCTGTCCGATGTCGT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GAAACATGGACTCCCACAAGCCGGACCGGGTGCC
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TTTTGGAGGCGGCTGGGGAGACGCTGGGTTCGG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GTGTGCGGGTGGCATCAGCTCATCCGAGACATTGA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GTATGGGTATCGCATGGGAACTTGTCCGCCTGAGG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GCCAGCTCCAGGGAGGAGCTGGTGGATTTCTTCTCCGA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC

>NZ_CP040505|25|5|1047497-1048908|CRT
GTCCAAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	CCGTCATGACTGAATGGAATCACATCAGCGAGTC
GTCTTAATGCACCTTATGACGCGAGGTGCTTTCTGAC	GAACATCATCTCTGATCTTCAGCACTTTTCTCGCCGC
GTCTTAATGCACCTTATGGTGCGAGGTGCTTTCTGAC	CGGCCAACGGCGTTGAGGGTGTGCGCATAA
GTCTTAATGCACCTTATGGTGCGAGGTGCTTTCTGAC	GAACAAATGGAACTCACAAAAGAGAATCTGGAAAGC
GTCTTAATGCACCTTATGGTGCGAGGTGCTTTCTGAC	AAGAGGATGAAGAAAAAAGGTACCATGTTAAGAAAA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TGCGTAGTATTGCTAGCTAGTGGACATTTTTTCTTGG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	ACACGCCCACGGGAGGCGGTCAGTGACCCCAGAGGTAA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	AATCGTGGAGGAAAACCCTTGATAAGTGTGGAGTGC
GTCTTAATGCACCTTATAACGCGAGGTGCTTTCTGAC	GAAGGTAAAGTTCACTCTTAGTAATAGCCAGGC
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	AAAACAGCGCTGGCTGCGATGGAAGGAGCATGGGA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GCGGGATCCTTGGTGAGGTCGTTCTCCTCACCGAGG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TCGCGACACATGTCAACGAGTGCAAGACTTCGAGGTC
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	AAAAGTGTTGAGCGCGCGTAGAGTACCTTACGCAT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	AAGAGAAAAAGACAGACGCAACGCTGTCCGATGTCGT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GAAACATGGACTCCCACAAGCCGGACCGGGTGCC
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TTTTGGAGGCGGCTGGGGAGACGCTGGGTTCGG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GTGTGCGGGTGGCATCAGCTCATCCGAGACATTGA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GTATGGGTATCGCATGGGAACTTGTCCGCCTGAGG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GCCAGCTCCAGGGAGGAGCTGGTGGATTTCTTCTCCGA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC

>NZ_CP040505|25|3|1047568-1048908|PILER-CR
GTCTTAATGCACCTTATGACGCGAGGTGCTTTCTGAC	GAACATCATCTCTGATCTTCAGCACTTTTCTCGCCGC
GTCTTAATGCACCTTATGGTGCGAGGTGCTTTCTGAC	CGGCCAACGGCGTTGAGGGTGTGCGCATAA
GTCTTAATGCACCTTATGGTGCGAGGTGCTTTCTGAC	GAACAAATGGAACTCACAAAAGAGAATCTGGAAAGC
GTCTTAATGCACCTTATGGTGCGAGGTGCTTTCTGAC	AAGAGGATGAAGAAAAAAGGTACCATGTTAAGAAAA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TGCGTAGTATTGCTAGCTAGTGGACATTTTTTCTTGG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	ACACGCCCACGGGAGGCGGTCAGTGACCCCAGAGGTAA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	AATCGTGGAGGAAAACCCTTGATAAGTGTGGAGTGC
GTCTTAATGCACCTTATAACGCGAGGTGCTTTCTGAC	GAAGGTAAAGTTCACTCTTAGTAATAGCCAGGC
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	AAAACAGCGCTGGCTGCGATGGAAGGAGCATGGGA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GCGGGATCCTTGGTGAGGTCGTTCTCCTCACCGAGG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TCGCGACACATGTCAACGAGTGCAAGACTTCGAGGTC
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	AAAAGTGTTGAGCGCGCGTAGAGTACCTTACGCAT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	AAGAGAAAAAGACAGACGCAACGCTGTCCGATGTCGT
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GAAACATGGACTCCCACAAGCCGGACCGGGTGCC
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	TTTTGGAGGCGGCTGGGGAGACGCTGGGTTCGG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GTGTGCGGGTGGCATCAGCTCATCCGAGACATTGA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GTATGGGTATCGCATGGGAACTTGTCCGCCTGAGG
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC	GCCAGCTCCAGGGAGGAGCTGGTGGATTTCTTCTCCGA
GTCTTAATGCACCTTATGGCGCGAGGTGCTTTCTGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_083879483.1|1050956_1053668_-|hypothetical-protein	unknown	unknown	gnl|CDD|271234
NZ_CP040505.1|WP_005963699.1|1041099_1043649_-|aminopeptidase-N	unknown	unknown	gnl|CDD|274121
NZ_CP040505.1|WP_005963696.1|1039900_1040233_-|small-basic-family-protein	unknown	unknown	gnl|CDD|226374
NZ_CP040505.1|WP_005963722.1|1054081_1055254_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl|CDD|180937
NZ_CP040505.1|WP_005963739.1|1059468_1060332_-|ParA-family-protein	unknown	unknown	gnl|CDD|379293
NZ_CP040505.1|WP_005963694.1|1039125_1039899_-|DUF881-domain-containing-protein	unknown	unknown	gnl|CDD|377575
NZ_CP040505.1|WP_005963731.1|1057334_1058084_-|rRNA-pseudouridine-synthase	unknown	unknown	gnl|CDD|224108
NZ_CP040505.1|WP_005963693.1|1038631_1039063_-|FHA-domain-containing-protein	unknown	unknown	gnl|CDD|224630
NZ_CP040505.1|WP_051057879.1|1037183_1037699_-|MerR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|133380
NZ_CP040505.1|WP_005963713.1|1050154_1050793_-|alternate-type-signal-peptide-domain-containing-protein	unknown	unknown	gnl|CDD|274972
NZ_CP040505.1|WP_005963701.1|1043731_1045315_+|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	unknown	unknown	gnl|CDD|234660
NZ_CP040505.1|WP_083879482.1|1049467_1050148_-|signal-peptidase-I	unknown	unknown	gnl|CDD|131283
NZ_CP040505.1|WP_005963725.1|1055416_1056148_-|(d)CMP-kinase	unknown	unknown	gnl|CDD|234579
NZ_CP040505.1|WP_005963706.1|1046876_1047392_+|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl|CDD|223427
NZ_CP040505.1|WP_040314264.1|1045409_1046867_+|ribosome-biogenesis-GTPase-Der	unknown	unknown	gnl|CDD|179525
NZ_CP040505.1|WP_005963734.1|1058080_1058656_-|SMC-Scp-complex-subunit-ScpB	unknown	unknown	gnl|CDD|377219
NZ_CP040505.1|WP_005963737.1|1058645_1059485_-|segregation/condensation-protein-A	unknown	unknown	gnl|CDD|224273
NZ_CP040505.1|WP_005963698.1|1040234_1041092_-|DUF881-domain-containing-protein	unknown	unknown	gnl|CDD|377575
NZ_CP040505.1|WP_005963728.1|1056193_1057333_-|prephenate-dehydrogenase	unknown	unknown	gnl|CDD|235824
NZ_CP040505.1|WP_005963692.1|1037861_1038635_-|MerR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|133378

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_083879483.1|1050956_1053668_-|hypothetical-protein	gnl|CDD|271234	cd15482, Sialidase_non-viral, Non-viral sialidases. Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates, they play vital roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial and eukaryotic sialidases.	1.44872e-85
NZ_CP040505.1|WP_005963699.1|1041099_1043649_-|aminopeptidase-N	gnl|CDD|274121	TIGR02412, Aminopeptidase_N, aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).	0
NZ_CP040505.1|WP_005963696.1|1039900_1040233_-|small-basic-family-protein	gnl|CDD|226374	COG3856, Sbp, Uncharacterized conserved protein (small basic protein) [Function unknown].	3.24341e-30
NZ_CP040505.1|WP_005963722.1|1054081_1055254_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl|CDD|180937	PRK07337, PRK07337, pyridoxal phosphate-dependent aminotransferase.	2.5077e-161
NZ_CP040505.1|WP_005963739.1|1059468_1060332_-|ParA-family-protein	gnl|CDD|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	4.69453e-82
NZ_CP040505.1|WP_005963694.1|1039125_1039899_-|DUF881-domain-containing-protein	gnl|CDD|377575	pfam05949, DUF881, Bacterial protein of unknown function (DUF881). This family consists of a series of hypothetical bacterial proteins. One of the family members YlxW from Bacillus subtilis is thought to be involved in cell division and sporulation.	1.17947e-30
NZ_CP040505.1|WP_005963731.1|1057334_1058084_-|rRNA-pseudouridine-synthase	gnl|CDD|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	8.19146e-87
NZ_CP040505.1|WP_005963693.1|1038631_1039063_-|FHA-domain-containing-protein	gnl|CDD|224630	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms].	1.11941e-21
NZ_CP040505.1|WP_051057879.1|1037183_1037699_-|MerR-family-transcriptional-regulator	gnl|CDD|133380	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	1.58357e-16
NZ_CP040505.1|WP_005963713.1|1050154_1050793_-|alternate-type-signal-peptide-domain-containing-protein	gnl|CDD|274972	TIGR04089, conserved_hypothetical_protein, alternate signal-mediated exported protein, RER_14450 family. Members of this Actinobacterial protein family contain the cognate signal peptide domain, modeled by TIGR04088, for the variant SipW form of the signal peptidase I family. The remainder of this protein, however, differs from families such as Peptidase_M73 (pfam12389) and YqxM (TIGR04087) that share the same signal peptide domain. Some additional homologs to this family lack full-length homology and are excluded by the trusted cutoff as set. The two known targets for export by the SipW signal peptidase in Bacillus subtilis act in producing biofilm matrix material.	2.6235e-17
NZ_CP040505.1|WP_005963701.1|1043731_1045315_+|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	gnl|CDD|234660	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional.	2.71194e-152
NZ_CP040505.1|WP_083879482.1|1049467_1050148_-|signal-peptidase-I	gnl|CDD|131283	TIGR02228, Signal_peptidase_I_W, signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.	1.10853e-17
NZ_CP040505.1|WP_005963725.1|1055416_1056148_-|(d)CMP-kinase	gnl|CDD|234579	PRK00023, cmk, (d)CMP kinase.	2.92058e-67
NZ_CP040505.1|WP_005963706.1|1046876_1047392_+|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl|CDD|223427	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	8.61246e-49
NZ_CP040505.1|WP_040314264.1|1045409_1046867_+|ribosome-biogenesis-GTPase-Der	gnl|CDD|179525	PRK03003, PRK03003, GTP-binding protein Der; Reviewed.	0
NZ_CP040505.1|WP_005963734.1|1058080_1058656_-|SMC-Scp-complex-subunit-ScpB	gnl|CDD|377219	pfam04079, SMC_ScpB, Segregation and condensation complex subunit ScpB. This is a family of prokaryotic proteins that form one of the subunits, ScpB, of the segregation and condensation complex, condensin, that plays a key role in the maintenance of the chromosome. In prokaryotes the complex consists of three proteins, SMC, ScpA (kleisin) and ScpB. ScpB dimerizes and binds to ScpA. As originally predicted, ScpB is structurally a winged-helix at both its N- and C-terminal halves. IN Bacillus subtilis,one Smc dimer is bridged by a single ScpAB to generate asymmetric tripartite rings analogous to eukaryotic SMC complex ring-shaped assemblies.	6.47155e-53
NZ_CP040505.1|WP_005963737.1|1058645_1059485_-|segregation/condensation-protein-A	gnl|CDD|224273	COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family) [Replication, recombination, and repair].	5.77481e-41
NZ_CP040505.1|WP_005963698.1|1040234_1041092_-|DUF881-domain-containing-protein	gnl|CDD|377575	pfam05949, DUF881, Bacterial protein of unknown function (DUF881). This family consists of a series of hypothetical bacterial proteins. One of the family members YlxW from Bacillus subtilis is thought to be involved in cell division and sporulation.	1.24524e-35
NZ_CP040505.1|WP_005963728.1|1056193_1057333_-|prephenate-dehydrogenase	gnl|CDD|235824	PRK06545, PRK06545, prephenate dehydrogenase; Validated.	3.98405e-120
NZ_CP040505.1|WP_005963692.1|1037861_1038635_-|MerR-family-transcriptional-regulator	gnl|CDD|133378	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	1.71156e-15

Protein sequences

>NZ_CP040505.1|WP_005963706.1|1046876_1047392_+|methylated-DNA--[protein]-cysteine-S-methyltransferase
MLSWATMDSPIGALLLIASDRGLVRIAFEQEGFESVRLRVAQVLDEEIHEDATALLDLAKRQLTEYFAGERQSFDLPLDRCLSSGFFAEVQAILSTIPFGETMSYSQLAAATGHPKAHRAAANACAANPLPFIQACHRITRSDGTFGGYRGGVEAKRFLLDFERQRASSAL
>NZ_CP040505.1|WP_040314264.1|1045409_1046867_+|ribosome-biogenesis-GTPase-Der
MDASLDEDAELRASQMRHSLDMFELEEEDLALLDSEGVFDADEENRAGLPVLAIVGRPNVGKSTLVNRIIGRREAVVQDTPGVTRDRVSYPAEWAGTTFTVVDTGGWEVDVKGLDRSVAEQAEIAVDLADAVLLVLDATVGVTASDERIVTMLRSKGKPVVLAANKVDSPQQEADAAYLWSLGMGEPYPVSALHGRGTGDLLDAVLEVLPEESAVAAKMPEGGPRRVALLGRPNVGKSSLLNALAGSERVVVNELAGTTRDPVDELVELDGEFWWFVDTAGIRRKMHRTTGADYYASIRTQAALEKAEVALVLFDGSEPLTEQDIRVVQAVVDAGRALVIVNNKWDLVDEERQLALRAELERELVQMSWAPRINLSAKTSWHTNRITRALRTALEGWETRIPTGQLNAFLGQLVAAHPHPLRGGKQPRILFGTQVSNRPPRFVLFTTGFLDPGYRRFIERRLREEFGFEGTPIQISMRVRERKRK
>NZ_CP040505.1|WP_005963701.1|1043731_1045315_+|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase
MTSVVDIRPTVEPLPLSQALQGLNVEAFLDARGNALSASQLDALKVSGATVSSLDCEAGWVFVAIPGLTQHGVRFAAAAQVNGASVLLTDVEGAELARQAGVDLPVVVVADPRSAAALVSKNIYGSPAEKLKTMAVTGTNGKTTTSFLMRAALGIEFADPAICGTVETRIGGLRFRSDQTTAESPVVERLLAVTLEKGLGAAVVETSSHALSFGRVDGIVFDVVAFTNLQHDHLDYYGEMENYYAAKKMLFTPAHSKRGVVCVDDEWGQRLAKEASVPVTTVAALSEEEADWTVRNVHPDQGLGKIVFELVDPEGVAHPVAMPILGEVNVQNTAVAIVAALSLGYDTDEVIAALERAEQIPGRMQKINPEPRNQPLVIVDYAHTPEALEWTLRSTRDLTVGKLVIVFGTDGDRDASKREVIAGIAAREADVLWVTDENPRTEDPQSIRDYLMRGIKSVRPDLNDVTEVTSCRRDAVRKAILAAQPGDTVIITGKGSEWYQDIEGIKHEYNDVPVAREVLTYDLRSHV
>NZ_CP040505.1|WP_005963699.1|1041099_1043649_-|aminopeptidase-N
MRVLTRTEAHERAQSIALDEMAVHVDVRGGDAPRASTFQVRSTLSLTATTSSTFLDVAGTVTSLSVNGHVRQFHQDEERLALEDLPTGTPITITVDADYSYSRTGEGLHRYEDPEDARVYCYTQFEPQDAHRAWPCFDQPDMKARWSFTVDAPTHWIVASNGQEVSTEAIEDGVRHVFAQTLPLSSYITALVAGDWAVVDGGVWKGGAPGGEELEVPLRLMCRRALAPSMDSGDILEVTTAGLDFFHEVYASNYPWGKYDEVFVPEYNLGAMENPGCVTFNESYLSREHPTFFERQRRANTILHEMCHMWFGDLVTPQWWDGLWLKESFAENQGAIAAARATKYAGERAAFVVGRKAWALEQDQMPTTHPIDADIPDVAAAKTNFDGITYAKGAAVLNQLVAWVGEDAFFKGARLYFTRYAYSSTRLEDLISCLEEASSHDLSGWVEAWLKTSGPAILSASWQTDLSGRVFDFTLRDEAQKPGQCPHRLEVSTWALRGGKLEKTHSFDVRMNGVEAPIDPEGILNVSGGRSHMDLVVVNDNDLTYAVPRLDSSSTELALGFISTCPDLMTRSVVWSSLWNAVRDGLLDPEKFAFSAMRCALDEEDASLAAEIVTMARSAMTSYLPSSKRAPLIHELSRTAVRLARTLSADRARPWVKAMLSLVPLAAKEETLLFVRELAEHNSSHSGWLARAALAARDEASPQDIEQWFLAHPSGEAAAHRVRALAAIPRGEQREAAWQLITSPQVSNDHLSAAFEGLALSTWSGESIVRRALEVMEEFWGLHTIGLAIRFVNGSLLGGIDIENPASLNDLVEQVSQWLDSHEDAAPALRRLMIEHLDDAKRRVRVQER
>NZ_CP040505.1|WP_005963698.1|1040234_1041092_-|DUF881-domain-containing-protein
MKDSKDSKDLHGKELPENDRAPVDPAASMSLLTQLLANPLDAGYTEYAGHEAKQYWWQRVLVLLFALGLGFASVTAITSLRTASAHDVVNDLRDRAQSQQRIVGSLQDDVQSLSSRLDTATGEEGGASSLDTGLLVANSLAPVSGPGLVVTLKDSESAAALSKSGRGRVRDLDLNVVVNALWGAGAEAIAINGIRVGPGTFIRTAGSVILVNITPVQSPYLVSAIGDANALSVALVRDQTGDFLSSAQSINGITLSTAGNSTLDLPALDLRTTREAKPLETGKGD
>NZ_CP040505.1|WP_005963696.1|1039900_1040233_-|small-basic-family-protein
MPAIIGLIVGILLGLYFDPTVPSWLQPFLPVAVVAGLDALFGAARAWLEGAFHDRVFITSFFWNVVVACLLVLMGNQLGVGSAMTTAVVVVLGIRIFSNTASIRRLILKA
>NZ_CP040505.1|WP_005963694.1|1039125_1039899_-|DUF881-domain-containing-protein
MSEDTTPTRTGHPRKIPFLTRLSEAIFAAPRAIHLLLLLICVLLGFALVTQVRAQRSDPLESLSEEDLVVLLSELNAQENALRLERANLQVKVAELESAANEQEAQAEAAQAAELQARINAGAVPVHGPGVIMRVSDPEGALSATEFVMTLGELRNAGAEAIELNGIRLSTRSAFVGAGGQIHVDGTPIFSPYDWRAIGASQTISTALEIQAGSAAQMRAKGAQVSIMENPDFRIESVATVPQPQFATPMTEDLHPE
>NZ_CP040505.1|WP_005963693.1|1038631_1039063_-|FHA-domain-containing-protein
MDQSQEFDPTATCVFGISPVDESGDTTMPLSARDREAVDALPAGSALLIVQRGPNTGARFLLDAEATSAGRSPKSDIFLDDVTVSRSHCQFIAVDGGHVVRDSGSLNGTYVNRERVDSARLNTGDEVQIGKYRLTYQPSPRTA
>NZ_CP040505.1|WP_005963692.1|1037861_1038635_-|MerR-family-transcriptional-regulator
MSTPVKSQVLQEEASEAEIGPWPRGVDRTPSLSIGQVVSELKAEFPAISLSKVRFLEEQGLVSPARTGSGYRKYSRADIERLRFVLSAQRDSFTPLKVIGDQLRALDAGHEVEPARHARVVASEGKIVTPSNGRPISARDLADLTGVDLEGLERYVRFGLISPDIAGYFPARAVQIVQILVRLEAAGFDARILRSVRTGAERSADIVDQTVSSQRSRVRSGDAERANARILECGELLAELHRELLRVSLTQLQVKGT
>NZ_CP040505.1|WP_051057879.1|1037183_1037699_-|MerR-family-transcriptional-regulator
MLFGDPLEGLEGDGLGYRGPVACTAAGITYRQLDYWARTGLLQPSVRAARGSGSQRLYSFKDILVLKIVKKLLDTGVSLQQVRTAVVQLQDRGVDDLASITLMSDGASVYECTSTDEVIDLLQGGQGVFGIAVGRVWREVEGTLADLPIERLGGEPVDELAERRRRKRSAS
>NZ_CP040505.1|WP_083879482.1|1049467_1050148_-|signal-peptidase-I
MNSTQSVASASSLPRVGEEAGVSRVRTKREGKRFGVFQAVQYVALIVLGLLITLVSVIPAVMGWVPLTILSGSMAPSMPAGSLAVVAPIDVDERENIPIGTVITYMPHPDSDELVTHRVIVRNTASNGSVSYILKGDANDSPDSAPVLPKQIRAEKKYSIPFAGRMLRLLTPDVKFIGRILLASVLLVYALWQIRMSFKERSQRSKAQGLGGSASGGGVDSPEDSR
>NZ_CP040505.1|WP_005963713.1|1050154_1050793_-|alternate-type-signal-peptide-domain-containing-protein
MSRNTRAALAITAAVALLAGSGASFARWYDEKALSDANVTTGVLSIEQTPGSESWLINTPDSDDTADATVPFDPANDKIVPGDVVTYSTTFTLHLEGKNLRASAALLPEGLDTSVDGLSVSSEFDCGSANLAALTQADNGATCTAKATIVYEQGSKDNSTSAFPELRGNSTKEPHSEGWAKAPAEQSVAVEITGFKVVLEQNLRPAQVPFGG
>NZ_CP040505.1|WP_083879483.1|1050956_1053668_-|hypothetical-protein
MKTCPAPDTGVTMRTKLPSRVRRLPAILAIGVLAITGMSTAPAYAEDNAEETIDVKIQAEPEWSPKDSYRVGDVLQFQLIITNTASADRAVSITDSNLERYAPCKWWRIGGNTTGADSIRSDCRSSKGFITHTITAEDIAQGSFTPWVQVHTNEVRNPSKVYIDALRVEGDPVEIPSGLFTIESLTLDEQGAQEVYKAGDRVNYTVKLADTSATQSYAVTESTFEEGSFECHPGETEDTQLCGPLSHVFTSEEANSQSWTPFVKISASANGEVVRTQSMSGEPLTLQGVYPDAVGGPRHDADATLEGEMTNPIELIHRAGSNRYRIPAITVATNGDLLASYDERPTVATCQGNPNGDSPNPNSIVQQRSTDGGVTWGPKTYIHKGIPSMDCDEQEGYSDPSYIVDHETGTIFNFHVKSFRVGLPNARKYGNDVNDHDVMQAEVSISKDNGYTWEHKVITPVVNPESEDLWNFAASGQGIQTVSGPHPGRLIQQYTVKNWRGTQAVSVYSDDHGATWHRGTPVGSHMDENKVVELSDGTLMLNSRDIRSSGKRIIALSHDAGETWVEEHMDPNLIDSRNNAQIIRAFPNATADDPRAKVLLFSNAQGSDYNRWDRTHGTIWMSCDDGQTWPFKKVFREENTSYSTITVLPDGRIGLLSEDNNNSEGIYYRSFPIGWVEGACQTMSAQALSAEAGTTTLEVPVSVTNYVAPGAKGGTLNATQLPEGWSATPAEVADTASGPAEGTFTLNIPANAQADTYTFNAELRSADDKVLASTPVTLTLNGPVKPDYVQRSIGQKNTKILRGDWDGDGVPTFGVRSFSRFVTFDANAIDAKPTSIVQFGRVTDTVYVGDWDGDGADSLALVRGTTAYLQVNAASPKTTKISVPKGPLKVERVEGRDVLVAAQ
>NZ_CP040505.1|WP_005963722.1|1054081_1055254_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MTRLSQRARDFQPFYAMSVATEAGRLAAEGHDVIKLSLGEPDSGAPPRVLAALKELSDGRPLPYTDALGAPELRQAIATRYKELHGLKITPERVCVTSGASAALLLASAALVNPGDEVLLDDPSYPCNRQILSTFGAKVRLIDTTPESRFQLDSKLVEANWNEKTCGVLIASPSNPTGTSAPLEELEKIGNFVQSKGGWRVIDEIYLDLADELPDGSRPRSALSVDPDAIIISSFSKYFGMTGWRLGWAIIPEDMIEPMERLSQNLFICAPTPAQIAALECFHPESIAWCEQRRELFHERRQAAIEGLAELGLPISVEPDGAFYVYFDVSQTGMSADEFCDRALHEHFVALTPGRDFGPLTATTHVRLSCAASLEAIREGISRLAPLLRH
>NZ_CP040505.1|WP_005963725.1|1055416_1056148_-|(d)CMP-kinase
MNDEERREAIRRSGITIAIDGPAGSGKSTISKLLAMRLGIGYLDTGAMYRSLTWYALEQGLDLDDHESVVEAANRMPLVMNPDPVSPSYFVDGVEITRAIREPRIALAIPAVSTNLLVRKWMAFEQRRRMMEARESGSGMIAEGRDITTVVCPDADVRVLLLADEEERLRRRTLELHGEATPELMESVREQITKRDTADATVSEFMTPAEGVEVVDSSGLGIEGVAEEILTLVDRNLQSRAVI
>NZ_CP040505.1|WP_005963728.1|1056193_1057333_-|prephenate-dehydrogenase
MSSRPVATSGPVLIVGSGLLGASLGLALRGAGVDVYLHDTSPTALRLAQDIGAGVPLSDITDPSPSLVVVAAPPDVADLCILDALRTFPSAIVTDVASVKSAVVDGVLTTLATAQQEGFAARYVGSHPMAGRESSGAGAADADLFYGRPWVVVAHEHSAPQAVLAVRMLAGDVGAVPVEMDARTHDDSVALVSHVPQLVSSLLAARLAEARSESLGLAGQGVRDTTRIAASDPRLWTAILAGNAGPVVEVLEPLRADLDDLLAHLKAAAQRGPLRGGSVGAVNKVMEAGNRGVSRLPGKHGGAPRRYALLEVLIPDKPGELGRLFTELGEIGINIEDLSLEHSAGQAVGLARIMVDPGRLNEAEKELERRGWRLITNAV
>NZ_CP040505.1|WP_005963731.1|1057334_1058084_-|rRNA-pseudouridine-synthase
MRKDVYVEGGIRLQKALSQAGVASRRAAETLIAEGRVQVDGQVVRSQGIRIDPHKQSVHVDGERVFFDEAKHVVIAVNKPVGVVSTMSDPEGRPTLADLVVDYPERLYNVGRLDINTSGLLLLTNDGELANRLAHPSYEVPKTYVARVHGEVKPYVKRKLMEGIELEDGPIKADAFRVIDTYGDITSVEIVVHEGRNRLVRRMMDQVGYPVRELVRTAFGPIHLDRLQPGNSRRVKGNALKALYSCVGL
>NZ_CP040505.1|WP_005963734.1|1058080_1058656_-|SMC-Scp-complex-subunit-ScpB
MTNECPRTRELFAPLEAVLMVAPEPIPAAQLAEAVNAEEVFVLEALEDLAASYRGEDGGREHGFELRQSAGGWRIYSARPWADLVGRFIVGSATSRLSQAALETLAVVAYRQPVSRSRISHIRGVNVDAVVRTLVARGLIEEVGESVSGARLYGTTREFLEKMGFASLDELTPLAPYLPTGEELDELEELL
>NZ_CP040505.1|WP_005963737.1|1058645_1059485_-|segregation/condensation-protein-A
MATQPDSDSGSQGVIDDFTVVLDVFEGPFDLLLQLIARKRLDITEVALSEVTDEFLAHMKVFPDLSRTSEFLVVAATLLHMKSVSLLPRTEVDSDISREDLEARDLLFSRLLQYRAFKGASEKIHEALEVNADYIPRQAPLEKHFAALLPELIWTLSPEDLAIAAAHALSSKDPEVVTTHLHDPLVPVREQAILVAERLKTVGALTFHELIADAESARVVVSRFLAVLELYRRHALDVNQDEPLAELELVWTGDEDTVIDIDEADYSGLGFIEGEADDE
>NZ_CP040505.1|WP_005963739.1|1059468_1060332_-|ParA-family-protein
MTKDVQPTLPGDIGPDPNDFPIPVPLSGHGPARVIAMCNQKGGVGKTTTTINLGAALAEYGRRVLIVDLDPQGAASVGLGINTLDMDQTIYTLLMNPKAQVESSICPTCVEGLDIIPANIDLSAAEVQLVTEVARESALARVLRHVEDDYDIILIDCQPSLGLLAINALTAAHGVIVPVETEFFALRGVALLVETIETVRDRINPRLKIDGIVPTMVDSRTLHSREVLERLDEAFGDLVFTTRIARTVKFPDASVATEPITTYAPTHPGAQAYRRLARELIARGDAA

Crispr_ID: NZ_CP040505_26

• CRISPR_ID: NZ_CP040505_26
• CRISPR_location: 1211728-1211935
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 3 spacers

Consensus repeat of NZ_CP040505_26

Consensus_repeat	Method
GCAGGCCCCATGGGCGCGGGTGGGCC	CRISPRCasFinder

spacers of NZ_CP040505_26

>26.1|1211754|34|NZ_CP040505|CRISPRCasFinder
GGACAGCGTGGAGGTTAAAGCGCACTGTCTGGCG
>26.2|1211814|34|NZ_CP040505|CRISPRCasFinder
ATGTGCTCGGCTTGTTGCCAGTCCTGCAATGCCG
>26.3|1211874|36|NZ_CP040505|CRISPRCasFinder
GACTGCGACACAGTGCTAGATACGCGGAGCCGCAAA

CRISPR arrays and Neighbor proteins around NZ_CP040505_26

CRISPR arrays

The CRISPR arrays of NZ_CP040505_26

>merge|NZ_CP040505|26|1211728-1211935|CRISPRCasFinder
GCAGGCCCCATGGGCGCGGGTGGGCCGGACAGCGTGGAGGTTAAAGCGCACTGTCTGGCGCAGGCCCCCATGGGCGCGGGTGGGCCATGTGCTCGGCTTGTTGCCAGTCCTGCAATGCCGCAGGCCCTCAGGGGCGCGGGTGGATCGACTGCGACACAGTGCTAGATACGCGGAGCCGCAAAACGCCTCCTAAGCGCGCGGGTGGGCC

>NZ_CP040505|26|24|1211728-1211935|CRISPRCasFinder
GCAGGCCCCATGGGCGCGGGTGGGCC	GGACAGCGTGGAGGTTAAAGCGCACTGTCTGGCG
CAGGCCCCCATGGGCGCGGGTGGGCC	ATGTGCTCGGCTTGTTGCCAGTCCTGCAATGCCG
CAGGCCCTCAGGGGCGCGGGTGGATC	GACTGCGACACAGTGCTAGATACGCGGAGCCGCAAA
ACGCCTCCTAAGCGCGCGGGTGGGCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005964077.1|1208657_1209485_-|elongation-factor-Ts	unknown	unknown	gnl|CDD|236491
NZ_CP040505.1|WP_005964095.1|1216501_1217170_-|ribonuclease-HII	unknown	unknown	gnl|CDD|260003
NZ_CP040505.1|WP_005964059.1|1203365_1204601_-|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl|CDD|235472
NZ_CP040505.1|WP_005964064.1|1205145_1206381_-|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	unknown	unknown	gnl|CDD|184689
NZ_CP040505.1|WP_005964067.1|1206377_1207265_-|phosphatidate-cytidylyltransferase	unknown	unknown	gnl|CDD|366491
NZ_CP040505.1|WP_040314142.1|1213970_1215524_-|YifB-family-Mg-chelatase-like-AAA-ATPase	unknown	unknown	gnl|CDD|223679
NZ_CP040505.1|WP_005964093.1|1216126_1216426_-|DUF2469-domain-containing-protein	unknown	unknown	gnl|CDD|313765
NZ_CP040505.1|WP_005964056.1|1202127_1203366_-|site-2-protease-family-protein	unknown	unknown	gnl|CDD|308008
NZ_CP040505.1|WP_005964070.1|1207270_1207828_-|ribosome-recycling-factor	unknown	unknown	gnl|CDD|178850
NZ_CP040505.1|WP_005964101.1|1219866_1220391_-|ribosome-maturation-factor-RimM	unknown	unknown	gnl|CDD|234650
NZ_CP040505.1|WP_005964079.1|1209515_1210358_-|30S-ribosomal-protein-S2	unknown	unknown	gnl|CDD|235396
NZ_CP040505.1|WP_005964103.1|1220493_1220733_-|RNA-binding-protein	unknown	unknown	gnl|CDD|179479
NZ_CP040505.1|WP_083879499.1|1215502_1215955_-|YraN-family-protein	unknown	unknown	gnl|CDD|237119
NZ_CP040505.1|WP_005964100.1|1218526_1219870_-|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl|CDD|234581
NZ_CP040505.1|WP_005964061.1|1204597_1205149_-|DivIVA-domain-containing-protein	unknown	unknown	gnl|CDD|188337
NZ_CP040505.1|WP_005964099.1|1217995_1218352_-|50S-ribosomal-protein-L19	unknown	unknown	gnl|CDD|235418
NZ_CP040505.1|WP_083879485.1|1210563_1211502_+|M23-family-metallopeptidase	unknown	unknown	gnl|CDD|366703
NZ_CP040505.1|WP_005964085.1|1212841_1213981_-|DNA-protecting-protein-DprA	unknown	unknown	gnl|CDD|223829
NZ_CP040505.1|WP_040314138.1|1207845_1208562_-|UMP-kinase	unknown	unknown	gnl|CDD|234735
NZ_CP040505.1|WP_131247391.1|1217169_1217877_-|signal-peptidase-I	unknown	unknown	gnl|CDD|274044

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005964077.1|1208657_1209485_-|elongation-factor-Ts	gnl|CDD|236491	PRK09377, tsf, elongation factor Ts; Provisional.	6.58087e-125
NZ_CP040505.1|WP_005964095.1|1216501_1217170_-|ribonuclease-HII	gnl|CDD|260003	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like. This family includes mostly bacterial type 2 RNases H, with some eukaryotic members. Bacterial RNase HII has a role in primer removal based on its involvement in ribonucleotide-specific catalytic activity in the presence of RNA/DNA hybrid substrates. Several bacteria, such as Bacillus subtilis, have two different type II RNases H, RNases HII and HIII; double deletion of these leads to cellular lethality. It appears that type I and type II RNases H also have overlapping functions in cells, as over-expression of Escherichia coli RNase HII can complement an RNase HI deletion phenotype. In Leishmania mitochondria, of the four distinct RNase H genes (H1, HIIA, HIIB, HIIC), HIIC is essential for the survival of the parasite and thus can be a potential target for anti-leishmanial chemotherapy. Ribonuclease H (RNase H) is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair.	4.35839e-72
NZ_CP040505.1|WP_005964059.1|1203365_1204601_-|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl|CDD|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NZ_CP040505.1|WP_005964064.1|1205145_1206381_-|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	gnl|CDD|184689	PRK14459, PRK14459, ribosomal RNA large subunit methyltransferase N; Provisional.	0
NZ_CP040505.1|WP_005964067.1|1206377_1207265_-|phosphatidate-cytidylyltransferase	gnl|CDD|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	1.15123e-47
NZ_CP040505.1|WP_040314142.1|1213970_1215524_-|YifB-family-Mg-chelatase-like-AAA-ATPase	gnl|CDD|223679	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones].	3.25363e-163
NZ_CP040505.1|WP_005964093.1|1216126_1216426_-|DUF2469-domain-containing-protein	gnl|CDD|313765	pfam10611, DUF2469, Protein of unknown function (DUF2469). Member proteins often found in Actinomycetes clustered with signal peptidase and/or RNAse-HII.	2.9521e-56
NZ_CP040505.1|WP_005964056.1|1202127_1203366_-|site-2-protease-family-protein	gnl|CDD|308008	pfam02163, Peptidase_M50, Peptidase family M50.	3.446e-40
NZ_CP040505.1|WP_005964070.1|1207270_1207828_-|ribosome-recycling-factor	gnl|CDD|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	1.89567e-94
NZ_CP040505.1|WP_005964101.1|1219866_1220391_-|ribosome-maturation-factor-RimM	gnl|CDD|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	1.06907e-47
NZ_CP040505.1|WP_005964079.1|1209515_1210358_-|30S-ribosomal-protein-S2	gnl|CDD|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	2.16217e-162
NZ_CP040505.1|WP_005964103.1|1220493_1220733_-|RNA-binding-protein	gnl|CDD|179479	PRK02821, PRK02821, RNA-binding protein.	3.78464e-32
NZ_CP040505.1|WP_083879499.1|1215502_1215955_-|YraN-family-protein	gnl|CDD|237119	PRK12497, PRK12497, YraN family protein.	2.8627e-29
NZ_CP040505.1|WP_005964100.1|1218526_1219870_-|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl|CDD|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	2.29942e-126
NZ_CP040505.1|WP_005964061.1|1204597_1205149_-|DivIVA-domain-containing-protein	gnl|CDD|188337	TIGR03543, divI1A_rptt_fam, DivIVA domain repeat protein. Members of this protein family contain two full and two partial repeats of a domain found at the N-terminus of Bacillus subtilis cell-division initiation protein DivIVA. The portion repeated four times in these proteins includes the motif GYxxxxVD.	9.46174e-60
NZ_CP040505.1|WP_005964099.1|1217995_1218352_-|50S-ribosomal-protein-L19	gnl|CDD|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	2.61015e-66
NZ_CP040505.1|WP_083879485.1|1210563_1211502_+|M23-family-metallopeptidase	gnl|CDD|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.42646e-10
NZ_CP040505.1|WP_005964085.1|1212841_1213981_-|DNA-protecting-protein-DprA	gnl|CDD|223829	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion].	5.75651e-80
NZ_CP040505.1|WP_040314138.1|1207845_1208562_-|UMP-kinase	gnl|CDD|234735	PRK00358, pyrH, uridylate kinase; Provisional.	5.18666e-129
NZ_CP040505.1|WP_131247391.1|1217169_1217877_-|signal-peptidase-I	gnl|CDD|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	1.33654e-40

Protein sequences

>NZ_CP040505.1|WP_083879485.1|1210563_1211502_+|M23-family-metallopeptidase
MRSGGLSSVIVTLVAESASSSASCAIDTCACSASAGALPLSTGLRAPTTHPHPQGIVMVFRLNTVEAGLVLSRLVFLVFALSASLLVAPLEAPPRGALGLLPSSKTGVFFAPPGAVPLRAGGPALGETRGMLSRETPERLADAMTGPGIFDVARALEYEDAGALIFTEAGSAALETSPADSGWSWPCDGPARVLRAYDPPARPWLAGHRGVDLDLPPGSIIRAPAAGTVLVAGTIVDRPVISIQHGRLRSTFEAVEPLVLPGQFVARGEAIGVLGEGSHTPGLHWGAKLSATEYVDPLRLLVGEVVLWPWEG
>NZ_CP040505.1|WP_005964079.1|1209515_1210358_-|30S-ribosomal-protein-S2
MAVVTMRQLLESGVHFGHQTRRWNPKMKRFILTERNGIYIIDLQQTIADIDIAYDFVKQTVAHGGSILFVGTKKQAQEAVAEQATRVGMPYVNHRWLGGMLTNFQTVAKRLQRLKELEQLDFEDVAASGHTKKELLMMSREKEKLSRTLGGIRDMAKVPSALWIVDPKKEHLAVAEARKLNIPIVAILDTNADPDEVDYRIPGNDDAIRAVSLLTRVIADAVADGLLARSETRKSADSAETVAEPLAEWERELLEGEAAPAEVEEAKAEEAPAEEAPKQD
>NZ_CP040505.1|WP_005964077.1|1208657_1209485_-|elongation-factor-Ts
MANFTAADVKALREQTGAGMMDVKKALTEADGDAEKALEIIRLKGLKSLSKREDRQASAGLLVAEVEDGVGVLVEVNSETDFVAKNQKFIDFANEVLAAAVASKAADLETLLAAPMGGETVQDKLNGMAAIIGEKLEIRRVVRVEGENVDLYLHQTSPDLPPQVGVFVVTDAAGASVAHDIAMHVAAYMPAYLDRDHVPADVLEKERATLVKITLEEGKPEKIVDKIVTGRLEAYFKDNCLVDQAFARDPSKSVGKVLEEAGAKITDFVRVHVGA
>NZ_CP040505.1|WP_040314138.1|1207845_1208562_-|UMP-kinase
MAKSRRVLLKLSGEAFGGGAVGLDPLVVRDIAGQIATAVRRGVEVAVVVGGGNFFRGASLAQAGMDRSRADYMGMLGTVMNALALQDFIEQAGVPARVQSAITMTQVAEPYIPLRAIRHLEKGRVVIFGAGAGMPYFSTDTVSVQRTLETHCDELLVAKNGVDGVYDDDPRTNPEAKKLDFVTYSDALAHELKVVDSTALALCRDNGLKTRIFGMSEPGNVTAALLGERIGTLVTADN
>NZ_CP040505.1|WP_005964070.1|1207270_1207828_-|ribosome-recycling-factor
MIDDILLEAEDKMDRAVEAARGEFGNIRTGRANSAMFDQIPVDYYGAPTPMQQLASFQIPEARTVLISPFDRTATQEILKALRESDLGVNPTDDGNVIRVVLPALTEERRREYVKLAKTKAEEARVSVRNIRRKAKDTLDKLKKDGEAGEDEVDRAEKSLESTTKSHVEQIDKLLASKESELLTL
>NZ_CP040505.1|WP_005964067.1|1206377_1207265_-|phosphatidate-cytidylyltransferase
MDSPSLVGRILHPGPTRQGEPLAASGKAGRNLPAAVTTAIVLIVAASLPLVYVPWLFVVFIGVLVLAGLWELGGAFARLGTSLMMPPLYIGAIGMLTCAWTLGPEALLFALYATFFAVVTWRILEGDMKGCIQDVMASVFAAVYIPFLASFVVLMVKDLQDPWLVLVYVGLVVASDTGGWVAGVLFGKHPMAPRLSPKKSWEGFAGSSIAAAGLGAASFWALGAHWGFGVLAGLGACMIGTLGDLTESLIKREAGLKDMSALLPGHGGILDRVDALLMVAPIMYLILSWTLLGAQ
>NZ_CP040505.1|WP_005964064.1|1205145_1206381_-|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN
MTLAHAARPEVRPSDQPPEGATSADAKPIISFAPKRRGKAPAHLADLDLAGRKKVLKDLGLPAFRADQLSRHYFDHFSVDPNTMTDIPASMRENLVKVLLPELVTEVVVQRADRGMTLKHLWRLFDGAKVESVLMRYPERTTLCVSSQAGCGMACPFCATGQMGLTRNLSTAEIIDQVRQAQVACREGLLEGGPTRLSNIVFMGMGEPLANYKMLVSALHRLIDPSPEGFGMSARNITVSTVGLVPAIKKLAGEGLPVTLAVSLHAPDDDLRDELIPINSRWKVGELLDAAREYFLTNGRRVSIEYALIKDMNDQRYRAQLLADELNKRGHGWAHVNPIPLNPTPGTIWTASTRRAQDAFVKTLRDNGISTSIRDTRGSDIDGACGQLATAVTQGGATTAANEERSEQENR
>NZ_CP040505.1|WP_005964061.1|1204597_1205149_-|DivIVA-domain-containing-protein
MSDAFPKVSFLRNGYAPEHVDAFFEDARRAYEGGVPAERFSSEQVRQATFPLKRGGYRMDAVDAAMNRLEAAFVQRDRLDHVAVNGEAAWLEKIADRATTLYDRLLRPRGERFAHPQKGRGYDVVAVDDLLDRLAAYFDEGRPLSVDEVRTAVFKPARGKKGYLEGPVDAYLGRAVEILLAVE
>NZ_CP040505.1|WP_005964059.1|1203365_1204601_-|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MSAPTHFAASPVVILGSTGSIGTQALEVIRSHPGRFDVHALAAGGGRIELLARQVLEFGPQLVALASLGAQELIDVLKTLDPKAKIPEILEGEEGVTQAASLVPSGVVLNGITGGVGLAPTLAALQSGATLALANKESLVVGGHLVRSACVRPGQIVPVDSEHSAIAQALASGVHEKGLTSPLLTGKSEVADLVLTASGGPFRGRTRQELRDVTPAQAFSHPTWDMGPVVTINSSTLVNKGLELIEAHLLFDVAPEHVLTVVHPQSIVHSMVTWIDGATTLQASPPDMRLPIALGLSWPERLEKVEEPLTWSKPQSWTFEAIDETTFPAVSLARSAVAASATHPAVFNAANEVLVDAFISGRLPWLGIVDVLRDVVGAHEGIADPLLEDIIGAQEWARARAEEAVAQEGWK
>NZ_CP040505.1|WP_005964056.1|1202127_1203366_-|site-2-protease-family-protein
MGQVLGILVVLIGLTLSVALHELGHMLPAKRFGALVPEYAIGFGPKLFSVKKGTTHYVLRALPLGGYVRLLGMFAPGSPSRKRWRRSGHLTLAEEARRASAEEIPKGEEARAFYRLSWWRKVIVMACGPMVNLLLAFVFLAVAAFGIGSPVATLELSEVRATVHTSSGELPGPAATAGVKPGDRIVAVEGRPISRWSELGPAVKEAGHGPIELTLERADALVSVPVTPLMGEDERPVIGVVAAKEYRAATPSEFIGAYIQMLTRTGDALISLPSALWNVAHSLVAGTQRDQDGLVSIVGVGRIAGEVSADSSGANPDSLRYTWSVLLSILASVNIALGLFNLIPLLPLDGGHIAAALFEGARTGFARLARKPQPRPVDTARLMPVSYTVGALLIAMTLLLVLADIIRPIALE
>NZ_CP040505.1|WP_005964085.1|1212841_1213981_-|DNA-protecting-protein-DprA
MRIEAQAFDIAWWSCVAEPADPHAVALISALGPTEARAWAQAPLPGALPHALEGQGRWEEAHARWAPRAKAPGVQAELEQLEELGGRFIVPGDAQWPESLNDLGPLRPLGLWTIGTLPNNPRVSIVGARAASSAGERNAFDLGAGLAQAGVSTCSGGAFGIDIAAHRGCRAASAPTIAVMAGGLSKPYPLAHEEDFARIIAEGGALISECPSSWRPAKWRFLSRNRIIAALSPVTVVVEASIRSGALATARRAMELGREVGAMPGPLSSSSSEGCHELIRNSATLIRDAQDVLELLEPFTLGGQGTLFGAPVMRDRGVDALNPIPRRVFEALPKRSFARLSRLSRAAGLSESEVLTALAELELAGLIVSDSRGWARRRA
>NZ_CP040505.1|WP_040314142.1|1213970_1215524_-|YifB-family-Mg-chelatase-like-AAA-ATPase
MGQGSRMSARIASARSIALLGLEGYGVDVEAHVGRGLVTFTLVGLPDASLREAKDRVRSALQAIECEVLDAHITVNLSPAGLPKSGSGFDLAIAAAILKAAEAIHPQAFADTILLAELGLDGGLRPIKGTLPAVAAAKQIGAKRIIVAAASAAEASLVADIEVLGFDHLADVVVWAGGRASKPQLLDPAPMRPQSSTTYRQAPDLADVRGQDTAIDALEVAAAGGHHLFLIGEPGAGKTMLASRLPSILPPLEEAVALQTTAIHSLAGILPQDSSLIRTPPFQAPHHSMTIPALIGGGSGIAAPGAVSLAHGGVLFLDEAAEFSPSVLDSLRQPLEERFVTIHRSKASARYPSAFQLVLASNPCPCGHGGRACRCTSMQRRRYASRLSGPLLDRIDITIAMRQPTKADLRFSRQRFSAEVRKRVEEARARGARRLKDTGWKMNSELPGAWIRHSSGIPERFIEALDRAVDEGIVTMRGADRVLRLMWTLADLHERPLPNDEDLARALMLRNGGLNAN
>NZ_CP040505.1|WP_083879499.1|1215502_1215955_-|YraN-family-protein
MNTLTLPEKNGAKRETKDHRRILGKAGEETAAKILSEAGLVIRERNWRAGRIGELDLIAHEGEKTIIVEVRTRIGQRLGTPLESVDRRKIAKLRRLAGQWSSQNRLRQPICIDVIALGLPPQARERLPHIKEDTDLRTLGAEVTWVRGVA
>NZ_CP040505.1|WP_005964093.1|1216126_1216426_-|DUF2469-domain-containing-protein
MNEDIEGYENSLELALFREYRDVIGLFKYVVETERRFYLCNQVDVQARPVGGDVYFELKLTDAWVWDIYRSSRFVRSVHVVTFKDVNVEELSKPELNIP
>NZ_CP040505.1|WP_005964095.1|1216501_1217170_-|ribonuclease-HII
MPRILASRQFELELLTTYSPLVGMDEVGRGALAGPVAVGACAITGSEGEAPSGLADSKLLSAKKREELAPQVRSWAAASAVAWASNEEIDRFGIIVGLRLAGMRALARIEEKIGAPALVLLDGSHDWLTPPEDLFASLEGPEMPDVTLGEVMTRVKADAQCTLVAAASVIAKVARDEHMTKLEDPGYGWASNKGYSSPQHVAGLKALGPSFAHRRSWSLPGI
>NZ_CP040505.1|WP_131247391.1|1217169_1217877_-|signal-peptidase-I
MRVKLAPQHLPKAQEPAELEPLGFFGWIKEMLSVILVAAIISALLRAFVFQVFWIPSPSMRDTLVEHDKIVVSRIDAWTGSIQRGDVVVFHDELGWLRSSHGSSPLRRVGEFFGIVPAGDEQTLVKRVIGVGGDRVSFSVETGRISVNGVPIEEPYIAQGQVPSTIPFDEVVPEGTLWVMGDNRGNSADSRYHRQNGESPFVPVGAVVGTVKAVILPLNRAHWGLSAPEVFSQVK
>NZ_CP040505.1|WP_005964099.1|1217995_1218352_-|50S-ribosomal-protein-L19
MQKLDAVDAASLRSDLPAFRAGDTVKVHVKVIEGSRSRIQIFQGVVLARRGHGVSETFIVRKVSFGVGVERTFPLHAPTIDRIEVVTKGDVRRAKLYYLRERHGKAAKIKEHRSGSAE
>NZ_CP040505.1|WP_005964100.1|1218526_1219870_-|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MRIDLLSIFPDYFAPLGVSLLGKAGEHGLVDLRIRDLREWTHDRHRSVDDTPYGGGAGMVMMPSVWGEAIDEVFEEAETGGKSDRRVLAIPTPSGVPLTQAMAQDLTNVTQLVIACGRYEGIDQRVAEHYREAGFEVLEYSIGDYVLNGGEVAALVLVEAVTRLLDGFMGNPDSIVEESYSQGLLEYPAYTKPRSWRGLEVPEILLSGDHGAISRWRRDRSLERTAARRPDLLASLKPEELDSSDLELLAGLGILLREGRTHELKIRSAQIEEVGALGAIAARTFPDACPPELCQEAIEAFIAAELSEESFARYLADPQRYRILLALVEGEAVGYTLTLFGEDALDEAMVRKGRIEKGDAYLSKCYVDSTWRGSGLASALLEAAVRDAAEKSHAPRIVVATNEANLRAQRFYKKHGFKKAARRSFNVGGVVNRDLVFVRDLTGLRGQ
>NZ_CP040505.1|WP_005964101.1|1219866_1220391_-|ribosome-maturation-factor-RimM
MRMTAGIIGPAHGLRGEVLVDVRSDDPALWAPGSLFSLEDSPLAELTIGGVRIHKERLLVSFEEVTSREKAEELRGVRLLVEEHEEEDAWYPHQLKGLKALTPKGEELGTVSGVRFGSAQDLLLVRTPEGTVMVPFVAQIVPEVDLESGVVTIDAPPGLFDDDVVDTGETRSQR
>NZ_CP040505.1|WP_005964103.1|1220493_1220733_-|RNA-binding-protein
MLADALEHLVGGIVDHPEDVQVSTRSMRRGQLLEVRVNPDDLGRVIGRGGRTARALRTVIGALSTRGPVRVDVVDTDRE

Crispr_ID: NZ_CP040505_27

• CRISPR_ID: NZ_CP040505_27
• CRISPR_location: 1228294-1228599
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 4 spacers
• Cas_protein_info: DEDDh

Consensus repeat of NZ_CP040505_27

Consensus_repeat	Method
GGTCTTCTTCGTTGTGCGACGCGTCGTCTTCTTCGC	CRISPRCasFinder

spacers of NZ_CP040505_27

>27.1|1228330|30|NZ_CP040505|CRISPRCasFinder
TGTGCTGTCTTCTGCGGCTTCGCTCTCAGT
>27.2|1228396|33|NZ_CP040505|CRISPRCasFinder
AGGGGCCTTCGCTTCTGGCGTGTCTTGTGTCGC
>27.3|1228465|33|NZ_CP040505|CRISPRCasFinder
CGGAGCCTTATCCGTCGCCTCCTCGGGGGCATC
>27.4|1228534|30|NZ_CP040505|CRISPRCasFinder
TGGGGCCTTCGCCTGCGCCTGCGAATCAGT

CRISPR arrays and Neighbor proteins around NZ_CP040505_27

CRISPR arrays

The CRISPR arrays of NZ_CP040505_27

>merge|NZ_CP040505|27|1228294-1228599|CRISPRCasFinder
CTTTTTGCGCGTGGTGCGCCGAGTGGTCTTCTTCGGTGTGCTGTCTTCTGCGGCTTCGCTCTCAGTGGTCTTCTTCGAGGCGCGCTTCGTCGTTTTCTTCGCAGGGGCCTTCGCTTCTGGCGTGTCTTGTGTCGCGGTGGCCTTGGTGCTCTTGCGCGGCGTCTTCTTCGCCGGAGCCTTATCCGTCGCCTCCTCGGGGGCATCGGTCTTCTTCGTTGTGCGACGCGTCGTCTTCTTCGCTGGGGCCTTCGCCTGCGCCTGCGAATCAGTGGTCTTCTTCGTCGTGCGACGCGTCGTCTTCTTCGC

>NZ_CP040505|27|25|1228294-1228599|CRISPRCasFinder
CTTTTTGCGCGTGGTGCGCCGAGTGGTCTTCTTCGG	TGTGCTGTCTTCTGCGGCTTCGCTCTCAGT
GGTCTTCTTCGAGGCGCGCTTCGTCGTTTTCTTCGC	AGGGGCCTTCGCTTCTGGCGTGTCTTGTGTCGC
GGTGGCCTTGGTGCTCTTGCGCGGCGTCTTCTTCGC	CGGAGCCTTATCCGTCGCCTCCTCGGGGGCATC
GGTCTTCTTCGTTGTGCGACGCGTCGTCTTCTTCGC	TGGGGCCTTCGCCTGCGCCTGCGAATCAGT
GGTCTTCTTCGTCGTGCGACGCGTCGTCTTCTTCGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005964110.1|1222379_1223477_-|amidohydrolase-family-protein	unknown	unknown	gnl|CDD|238624
NZ_CP040505.1|WP_040314145.1|1223473_1225060_-|signal-recognition-particle-protein	unknown	unknown	gnl|CDD|236780
NZ_CP040505.1|WP_005964153.1|1239373_1240354_-|hypothetical-protein	unknown	unknown	gnl|CDD|376844
NZ_CP040505.1|WP_005964108.1|1221364_1222351_+|inositol-monophosphatase	unknown	unknown	gnl|CDD|223559
NZ_CP040505.1|WP_005964103.1|1220493_1220733_-|RNA-binding-protein	unknown	unknown	gnl|CDD|179479
NZ_CP040505.1|WP_131247333.1|1237895_1238972_-|peptidylprolyl-isomerase	unknown	unknown	gnl|CDD|223619
NZ_CP040505.1|WP_005964100.1|1218526_1219870_-|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl|CDD|234581
NZ_CP040505.1|WP_040314149.1|1237390_1237783_-|response-regulator	unknown	unknown	gnl|CDD|381116
NZ_CP040505.1|WP_040314147.1|1228933_1230025_+|polyprenyl-synthetase-family-protein	unknown	unknown	gnl|CDD|223220
NZ_CP040505.1|WP_131247393.1|1236494_1237235_+|hypothetical-protein	DEDDh	cd06127_DEDDh_CAS-I	gnl|CDD|236123
NZ_CP040505.1|WP_040314324.1|1238868_1239222_-|iron-sulfur-cluster-insertion-protein-ErpA	unknown	unknown	gnl|CDD|272875
NZ_CP040505.1|WP_005964115.1|1225174_1226410_-|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl|CDD|236686
NZ_CP040505.1|WP_005964101.1|1219866_1220391_-|ribosome-maturation-factor-RimM	unknown	unknown	gnl|CDD|234650
NZ_CP040505.1|WP_005964133.1|1232730_1234170_-|3-deoxy-7-phosphoheptulonate-synthase-class-II	unknown	unknown	gnl|CDD|366662
NZ_CP040505.1|WP_005964127.1|1230188_1230539_-|hypothetical-protein	unknown	unknown	gnl|CDD|375793
NZ_CP040505.1|WP_005964105.1|1220734_1221184_-|30S-ribosomal-protein-S16	unknown	unknown	gnl|CDD|184724
NZ_CP040505.1|WP_005964099.1|1217995_1218352_-|50S-ribosomal-protein-L19	unknown	unknown	gnl|CDD|235418
NZ_CP040505.1|WP_005964138.1|1235507_1236326_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl|CDD|153251
NZ_CP040505.1|WP_005964119.1|1226463_1226799_-|hypothetical-protein	unknown	unknown	gnl|CDD|237836
NZ_CP040505.1|WP_005964135.1|1234166_1235384_-|pyrophosphate--fructose-6-phosphate-1-phosphotransferase	unknown	unknown	gnl|CDD|180620

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP040505.1|WP_131247393.1|1236494_1237235_+|hypothetical-protein	DEDDh	cd06127_DEDDh_CAS-I	8.7e-45	147.4	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005964110.1|1222379_1223477_-|amidohydrolase-family-protein	gnl|CDD|238624	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	3.524e-48
NZ_CP040505.1|WP_040314145.1|1223473_1225060_-|signal-recognition-particle-protein	gnl|CDD|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_CP040505.1|WP_005964153.1|1239373_1240354_-|hypothetical-protein	gnl|CDD|376844	pfam02595, Gly_kinase, Glycerate kinase family. This is family of Glycerate kinases.	3.62126e-06
NZ_CP040505.1|WP_005964108.1|1221364_1222351_+|inositol-monophosphatase	gnl|CDD|223559	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism].	5.43449e-45
NZ_CP040505.1|WP_005964103.1|1220493_1220733_-|RNA-binding-protein	gnl|CDD|179479	PRK02821, PRK02821, RNA-binding protein.	3.78464e-32
NZ_CP040505.1|WP_131247333.1|1237895_1238972_-|peptidylprolyl-isomerase	gnl|CDD|223619	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones].	2.07213e-21
NZ_CP040505.1|WP_005964100.1|1218526_1219870_-|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl|CDD|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	2.29942e-126
NZ_CP040505.1|WP_040314149.1|1237390_1237783_-|response-regulator	gnl|CDD|381116	cd17574, REC_OmpR, phosphoacceptor receiver (REC) domain of OmpR family response regulators. OmpR-like proteins are one of the most widespread transcriptional regulators. OmpR family members contain REC and winged helix-turn-helix (wHTH) DNA-binding output effector domain. They are involved in the control of environmental stress tolerance (such as the oxidative, osmotic and acid stress response), motility, virulence, outer membrane biogenesis and other processes. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	0.000215635
NZ_CP040505.1|WP_040314147.1|1228933_1230025_+|polyprenyl-synthetase-family-protein	gnl|CDD|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	9.97944e-52
NZ_CP040505.1|WP_131247393.1|1236494_1237235_+|hypothetical-protein	gnl|CDD|236123	PRK07883, PRK07883, DEDD exonuclease domain-containing protein.	3.40259e-70
NZ_CP040505.1|WP_040314324.1|1238868_1239222_-|iron-sulfur-cluster-insertion-protein-ErpA	gnl|CDD|272875	TIGR00049, Uncharacterized_protein_in_nifU_5'region, Iron-sulfur cluster assembly accessory protein. Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	9.08749e-49
NZ_CP040505.1|WP_005964115.1|1225174_1226410_-|signal-recognition-particle-docking-protein-FtsY	gnl|CDD|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	6.76151e-149
NZ_CP040505.1|WP_005964101.1|1219866_1220391_-|ribosome-maturation-factor-RimM	gnl|CDD|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	1.06907e-47
NZ_CP040505.1|WP_005964133.1|1232730_1234170_-|3-deoxy-7-phosphoheptulonate-synthase-class-II	gnl|CDD|366662	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family. Members of this family are aldolase enzymes that catalyze the first step of the shikimate pathway.	0
NZ_CP040505.1|WP_005964127.1|1230188_1230539_-|hypothetical-protein	gnl|CDD|375793	pfam18367, Rv2175c_C, Rv2175c C-terminal domain of unknown function. This is the C-terminal domain of unknown function found in actinomycetes such as M. tuberculosis Rv2175c. Rv2175c has a DNA binding activity and possesses a winged helix-turn-helix fold, furthermore it is identified as a substrate of the PknL kinase.	4.75174e-14
NZ_CP040505.1|WP_005964105.1|1220734_1221184_-|30S-ribosomal-protein-S16	gnl|CDD|184724	PRK14520, rpsP, 30S ribosomal protein S16; Provisional.	2.3059e-43
NZ_CP040505.1|WP_005964099.1|1217995_1218352_-|50S-ribosomal-protein-L19	gnl|CDD|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	2.61015e-66
NZ_CP040505.1|WP_005964138.1|1235507_1236326_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl|CDD|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	1.28907e-52
NZ_CP040505.1|WP_005964119.1|1226463_1226799_-|hypothetical-protein	gnl|CDD|237836	PRK14855, nhaA, pH-dependent sodium/proton antiporter; Provisional.	0.00474391
NZ_CP040505.1|WP_005964135.1|1234166_1235384_-|pyrophosphate--fructose-6-phosphate-1-phosphotransferase	gnl|CDD|180620	PRK06555, PRK06555, pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated.	0

Protein sequences

>NZ_CP040505.1|WP_005964119.1|1226463_1226799_-|hypothetical-protein
MLEGFIVIFFMLAVMLTAAVGVIVGLALVRRPAQAWQEHLKEQNAQFAAEEAPKRDELVGVKQTTLRDLIERNTTQRNAYFDADRLPGIERIEAVTERFEAIPPRKNTEES
>NZ_CP040505.1|WP_005964115.1|1225174_1226410_-|signal-recognition-particle-docking-protein-FtsY
MDAVLTFLSTPAGIGLAALIIAALIALVVLVVRRSGAAGPSVPEPPPAPAPESTQAKALETDSSQLPEARAGPADKSVPTLSTQPEEAEEAAETGALIEAPESLPSRMQRLRSRLSGSGSLGRAIVQILSRGELKATDWEEIEDTLLIADLGLDATDELMSRMKERVAIAGASDSNTIRTFLAEELLALVDENLDRSLHLDKQGENGELPATILMVGVNGTGKTTTVGKLARVLVAEGKSVLLGAADTFRAAAAEQLSTWGERVGVDVIKSDREGADPAAVAFDAVKQGAMRAVDVVLVDTAGRLQTKSTLMEELGKVKRVMEKQAPVSEVLLVLDATTGQNGLKQAQVFAEVAGVTGIVLTKLDGSAKGGIVVSVQKTLGVPVKFVGLGEGADDLAPFDPRSFVDAIVNS
>NZ_CP040505.1|WP_040314145.1|1223473_1225060_-|signal-recognition-particle-protein
MFGNLSDRLMQSFKQLRSRGVLTESDVDQTISEIRRALIDADVALPVVRQFTNEVREKAYGAARSKALNPGQQVIRIVHEELIKVLGGQTRELSFADRGPTVFMLAGLQGAGKTTLAGKLGKWLREEGKRVLLVASDLQRPNAVQQLQIVGERAGVEVWAPEPGNGVGDPVHVARTGLNHAIETGIDVVIVDTAGRLGVDEEMMAQAIAIRDAVEPREIMFVLDAMVGQDAVQTSTAFRDGVGFTGVVLSKLDGDARGGAALSVRGVTGAPILFASTGEGLDDFERFHADRMAGRILDMGDVLTLIEQAEKRLDAEEAERMAAKALSGELTLADFLSQLQQIKKLGSMKKMLGMIPGAAQMREQIENFDEREVDRVEAIVRSMTPQEREDVSILNGSRRARIARGSGTSVADVNGLVKRFEAAKEMMSQMGQAGGAMPGFGSMPGRGGKAKQKANARKAKADRAKVKKKARSGNPAKRRQQELEALLPRDQRKASAPGASFGAPTQEAQRPSMDDLPDDVKRMLQGLQ
>NZ_CP040505.1|WP_005964110.1|1222379_1223477_-|amidohydrolase-family-protein
MIFTGSLLWAPSQAITPSWTRGTWRIDNGVIDRIEERPGELGGYAIPGFVDSHAHIGIGEHGGLGTAQQLEQALAQRSTGVLAIRDCGSPVDTRWIDSRADLPKLKRAGRHLARPKRYIRGLPIELEDVKDLPEALAEQARHSDGWVKLVGDWIDRSKGADSDLEPLWPQEVLLDAVAAAHEAGARVAVHSFAHSTINDLLAAGVDDIEHATGMDADQADEAARRGVLVTPTLLQVGLFNEFAAQAGSKYPVYAETMMKMFERRREHFAMLREAGVTLLMGTDSGGYQEHGSIGKEFALWQAQGVDRTELLDIASWHTRRHLGFEALHPGASADLLIYSQDPRTGGDLSAPDAVILGGKLIAPCE
>NZ_CP040505.1|WP_005964108.1|1221364_1222351_+|inositol-monophosphatase
MSGAVESVTFSLFRGRMKPMTTPAPLDSALVCIARTAATHVGDYLRKVARSVDSVETKRDFHDPVTVHDKSVERALHLMLGSALPFSRVLGEETGAHVLQPNDLPELPEGIVMPEGEEWERALRAVADLGERVRWIVDPIDGTANFAAGLPWFNTSIGVELDGRMVAGVVNAPLLGELFSADSRRAWVEASQGVRELDARGADEESKAVIISYYPGVHALASDPKRAVERERKIASAFQSTRRYGAAALDLAYVAAGWIGAMMGTSFKPWDVAAGLHILSVSGGNVMNLEMGTGLGEGLRPGVVASNRGFLAPSARAVLLEIAQEDTL
>NZ_CP040505.1|WP_005964105.1|1220734_1221184_-|30S-ribosomal-protein-S16
MAVRIRLKRVGKTHAAAYRVVVVDSRKKRDGRVIEELGIYDPQPNPSKIRIDSDRAQYWLGVGAQPSDQVRNLLVLTGDIAKFNGKADAVSRVEVSEADKAAAAAEAVKAAEAEAEKSKAGKAAAKAEEEAKAAAEASAEEATEAGEEA
>NZ_CP040505.1|WP_005964103.1|1220493_1220733_-|RNA-binding-protein
MLADALEHLVGGIVDHPEDVQVSTRSMRRGQLLEVRVNPDDLGRVIGRGGRTARALRTVIGALSTRGPVRVDVVDTDRE
>NZ_CP040505.1|WP_005964101.1|1219866_1220391_-|ribosome-maturation-factor-RimM
MRMTAGIIGPAHGLRGEVLVDVRSDDPALWAPGSLFSLEDSPLAELTIGGVRIHKERLLVSFEEVTSREKAEELRGVRLLVEEHEEEDAWYPHQLKGLKALTPKGEELGTVSGVRFGSAQDLLLVRTPEGTVMVPFVAQIVPEVDLESGVVTIDAPPGLFDDDVVDTGETRSQR
>NZ_CP040505.1|WP_005964100.1|1218526_1219870_-|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MRIDLLSIFPDYFAPLGVSLLGKAGEHGLVDLRIRDLREWTHDRHRSVDDTPYGGGAGMVMMPSVWGEAIDEVFEEAETGGKSDRRVLAIPTPSGVPLTQAMAQDLTNVTQLVIACGRYEGIDQRVAEHYREAGFEVLEYSIGDYVLNGGEVAALVLVEAVTRLLDGFMGNPDSIVEESYSQGLLEYPAYTKPRSWRGLEVPEILLSGDHGAISRWRRDRSLERTAARRPDLLASLKPEELDSSDLELLAGLGILLREGRTHELKIRSAQIEEVGALGAIAARTFPDACPPELCQEAIEAFIAAELSEESFARYLADPQRYRILLALVEGEAVGYTLTLFGEDALDEAMVRKGRIEKGDAYLSKCYVDSTWRGSGLASALLEAAVRDAAEKSHAPRIVVATNEANLRAQRFYKKHGFKKAARRSFNVGGVVNRDLVFVRDLTGLRGQ
>NZ_CP040505.1|WP_005964099.1|1217995_1218352_-|50S-ribosomal-protein-L19
MQKLDAVDAASLRSDLPAFRAGDTVKVHVKVIEGSRSRIQIFQGVVLARRGHGVSETFIVRKVSFGVGVERTFPLHAPTIDRIEVVTKGDVRRAKLYYLRERHGKAAKIKEHRSGSAE
>NZ_CP040505.1|WP_040314147.1|1228933_1230025_+|polyprenyl-synthetase-family-protein
MTSLAARFFELRPLIDQQTQEDLSALLVQIGSGEASSDFLDSAFGAIRSGKRFRALLAHFGAALVSGKELGQAPVAHLGAALELYQASALAHDDVIDHADTRRGAPTPHIRLATIHRERQWLGSDERFGAAAAILLGDLLFSAAERSIGLQCESLEPKIASRLLARYTTMHAEVALGQYLDVRAEHLPLDLHNPDAIPLREVREVVIRKSAHYSIVHPALLGAIAAGGSEELVQALEEALTPWGIAFQLRDDDLGVFGDPEVTGKPAGDDLREGKRTMLLSLSWKNASVAEREILAGVLGDEKASPDSIARATEVIATRGRDVHEALIASLVDEGEAQLEDRFSEAERADLLELAQIITARRA
>NZ_CP040505.1|WP_005964127.1|1230188_1230539_-|hypothetical-protein
MTTYPETICAQEAARLLGIEPRRIKQLVRDRHLFTIPLPEGGRAIPREILVKAADGWEPLFSLPGTLTLLADGGFTEDEAAAWLYTEHDELGETPMEAMLAGRHHRVNAIASTLAL
>NZ_CP040505.1|WP_005964133.1|1232730_1234170_-|3-deoxy-7-phosphoheptulonate-synthase-class-II
MTIPVKPGRGGSRFSSDPDRRDPEQLWSPKSGTQAPWDSWRAHEALQQPKYPDDEALRDVTAVLRRQPPLVFAGEVDDLRVWLGAAGRGEAFVLTGGDCAETFAEATADHLRLKIQTLLQMAVVLTYGASLPVVKIGRIAGQYAKPRSKDLETRGGVTLPSYRGDAVNSFEFTPEARIPDPGRLLETYHHASSTLNLIRAFTKGGYADLRLVHHWNRGFTQNPAYSRYESLAEEIHRAVLFMQAAGADFDSLREVDLYSSHEALLLEYESAMTRIDSRTGLAYDTSGHFLWVGERTRDLEGAHIELLRSVRNPIGVKLGPTTTVEQMLGLVERLNPDGEEGRLTFITRMGAAKIREALPPLLEAAKADGRPVTWMTDPMHGNTITSSNGYKTRRFETIMDEVGGFFESHDEVGTVPGGIHVELTGDDVTEVVGGSEELDEEELAKRYETVVDPRLNHQQSLEMAFQVAEYLRRGKVEGA
>NZ_CP040505.1|WP_005964135.1|1234166_1235384_-|pyrophosphate--fructose-6-phosphate-1-phosphotransferase
MSVRRVALLTAGGFAPCLSSAVGGLIERYNEIDPEIEIIAYQNGYHGLLTGNFVVVDEEARARAAVLHRFGGSPIGNSRVKLTNAKNLVERGLVAEGENPLEKAAEQLRKDGVDVLHTIGGDDTNTTAADLAAYLEEHDYHLTVVGLPKTIDNDVVPIRQSLGAWTAAEEVSEYAQNVIGEHRSNPRMLIIHEIMGRNCGWLTAAGSREYHEWLKTQEWVPSIGLSKERWDIHAVFLPEMALDIEAEAARLKKIMDEQGNVNIFLSEGAGVPEIIAEMEAAGVEVQRDPFGHVKLDTINPGQWFAKQFASKIEAEKVMVQKSGYFSRSSRANADDLRLIKSMTDLAVECALRGESGVIGHDEENGDRLRAIPFPRIAGGKPFDITQKWFTEMMAEIGQDVKPAAK
>NZ_CP040505.1|WP_005964138.1|1235507_1236326_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MAFYQALKATGGPVLKAAYKPWIRGKENIPDTGAAILASNHNAVWDSVFLPMMLDREVVFMGKADYFTGTGVKGWVTKEFMRAVGTIPVDRSGGRASEGAMKAGLDRLGRGELFGIYPEGTRSPDGRLYRGKTGVARLALLSGAPVIPVAMIGTHAAQPIGQKIPSRTNIGMVIGQPLDFSRYKGLHKDRYVLRAITDEIMYNLMLLSGQEYVDAYAADVKAKLAEEGKFDGPVPSNGRPAPGGRSAPIVEVPTRPEDQPEKPLESADPAQS
>NZ_CP040505.1|WP_131247393.1|1236494_1237235_+|hypothetical-protein
MLLELPGLEQRIEDASFLIVDLETTGLGARARITEIGAIIVSGGSIRDEFQSMVNPMQAIPPRITSLTGITQSMVEEAETIERVLPSFLTWSGLLSTTPPLLVAHNASFDLGFLKRAARRLEIPWPKSGVVDTLALARLALPRPLVSNHKLSTLVSHFKVDPGHAHRALADARATWHVLEALVQLMQPNGMSSVSDLLKYARPLPRGRYPHTPSGSIPQPFSRSQPTERSPERENSAVPRAKTHKS
>NZ_CP040505.1|WP_040314149.1|1237390_1237783_-|response-regulator
MSENTVRVLVFSGDATKRHAVITGVGRRASKNSALIEWSEAATPFGAKELVESHDFALLVLDAETQKEGGMSLAQELKNTMEDVPPIVFLTARQQDDWLASWAGGAAAIPDPLDPLVLQETIAQLLENAD
>NZ_CP040505.1|WP_131247333.1|1237895_1238972_-|peptidylprolyl-isomerase
MGRRSTSLTRLSVRGSPLTTRMRKTPAPAENPSTELMNPRVKIAAAAALVLALTTSLSACGTNTAQSDAQSSQSSLQSEGSAIPEVDRSGTANFPDVTGGFGEDPQIFAGQGQAPSTVAVKTIHQGEGAEISVVDSLVVNYELALWDGTKIESSFENGRAALFSLQEVIPGWTYALEKQHVGDRVEIVVPAQWGYGDRASGQIPAGSTLVFVVDVIDSSANVAIDESLQSQGTPTGEALPEGVTVEGEPGAEPTVSFAQGASAPSGNSRTLLVQGAGQTIVEGDYVLYRAVGGPFGSNEQINSSWALKPQLINAMQADLVGQSVGSRLVFVLGAGANEQQGAIPTLIVLDIVGILTVN
>NZ_CP040505.1|WP_040314324.1|1238868_1239222_-|iron-sulfur-cluster-insertion-protein-ErpA
MSDTGIEAPSHEVLITEVAAAKVKSLLAQEGRDDLRLRIAVQPGGCSGLIYQLYFDDRLLDGDALRDFDGVEVVVDRMSVPYLNGATIDFADSIERQGFTIDNPNAQNTCACGESFH
>NZ_CP040505.1|WP_005964153.1|1239373_1240354_-|hypothetical-protein
MTRRVLIAGHWSGGSPASSTALAALEEFGRGFLSSAVHWEVELIPFGPGSAFKEAVRGPGSSRYAPIVVPDDEQGSAWAGRKAREALELGLVPILEGGHPHSLDCGIGFISSLSGIEVSDSSTLEQTLPRALSTARQILARRDMIAAASTRRPLLGLSSVLAVDPELNARSVQDRGLTSLLTRLLSCSEEKSLPLLDSRTQSRGAGRIPGSGAGGGVGAMVHAIGGRIIDTGLFLRTLLRLDERIADADLVVVFEAKLHSPNLSDSFLDVICDAAAQHALPVVAIGEESSLSAHERAQWGLNGQFITEGKLSLFQAGVRIAQTWGR

Crispr_ID: NZ_CP040505_28

• CRISPR_ID: NZ_CP040505_28
• CRISPR_location: 1286087-1286242
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NZ_CP040505_28

Consensus_repeat	Method
TCACCCTCTGTCCCACGCGCCAGCAGAGCACCC	PILER-CR

spacers of NZ_CP040505_28

>28.1|1286120|35|NZ_CP040505|PILER-CR
TGCAAAGCGGTTTCGAGGATCTCAGGCGGCTCAGC
>28.2|1286188|29|NZ_CP040505|PILER-CR
GAATCCCCACCTCATCGCCCACTCCGATC

CRISPR arrays and Neighbor proteins around NZ_CP040505_28

CRISPR arrays

The CRISPR arrays of NZ_CP040505_28

>merge|NZ_CP040505|28|1286087-1286242|PILER-CR
TCACCTTCTGTCCCACGCGCCAGCAGAGCACCCTGCAAAGCGGTTTCGAGGATCTCAGGCGGCTCAGCCTGTCCCACGCGCCAGCAGAGCACCCGAATCCCCACCTCATCGCCCACTCCGATCTCGCCCTCTGTCCCACGCGCCAGCAGAGCACCC

>NZ_CP040505|28|4|1286087-1286242|PILER-CR
TCACCTTCTGTCCCACGCGCCAGCAGAGCACCC	TGCAAAGCGGTTTCGAGGATCTCAGGCGGCTCAGC
CTGTCCCACGCGCCAGCAGAGCACCCGAATCCC	CACCTCATCGCCCACTCCGATCTCGCCCT
CTGTCCCACGCGCCAGCAGAGCACCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005964289.1|1297180_1298281_+|tryptophan--tRNA-ligase	unknown	unknown	gnl|CDD|234866
NZ_CP040505.1|WP_005964286.1|1294709_1297001_+|glycogen-debranching-protein-GlgX	unknown	unknown	gnl|CDD|131155
NZ_CP040505.1|WP_131247341.1|1281893_1282637_-|metal-dependent-transcriptional-regulator	unknown	unknown	gnl|CDD|224240
NZ_CP040505.1|WP_005964290.1|1298581_1300630_+|DUF3416-domain-containing-protein	unknown	unknown	gnl|CDD|200482
NZ_CP040505.1|WP_005964233.1|1276877_1277840_-|Fpg/Nei-family-DNA-glycosylase	unknown	unknown	gnl|CDD|223344
NZ_CP040505.1|WP_005964278.1|1292698_1293697_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl|CDD|224936
NZ_CP040505.1|WP_040314156.1|1281004_1281451_+|HIT-family-protein	unknown	unknown	gnl|CDD|223611
NZ_CP040505.1|WP_005964259.1|1285335_1285812_-|peroxiredoxin	unknown	unknown	gnl|CDD|224146
NZ_CP040505.1|WP_005964251.1|1283746_1284193_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005964256.1|1284670_1285231_+|SMI1/KNR4-family-protein	unknown	unknown	gnl|CDD|379650
NZ_CP040505.1|WP_083879490.1|1291436_1292702_-|cysteine-desulfurase	unknown	unknown	gnl|CDD|224029
NZ_CP040505.1|WP_051057867.1|1275701_1276310_+|serine-O-acetyltransferase	unknown	unknown	gnl|CDD|200082
NZ_CP040505.1|WP_131247344.1|1289501_1289915_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005964281.1|1293698_1294490_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl|CDD|238847
NZ_CP040505.1|WP_005964267.1|1288734_1289427_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005964230.1|1276378_1276870_+|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|366181
NZ_CP040505.1|WP_005964264.1|1287309_1288356_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_040314343.1|1277955_1280889_-|leucine--tRNA-ligase	unknown	unknown	gnl|CDD|234743
NZ_CP040505.1|WP_131247343.1|1284152_1284524_+|PadR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224609
NZ_CP040505.1|WP_005964273.1|1290318_1291437_-|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl|CDD|234664

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005964289.1|1297180_1298281_+|tryptophan--tRNA-ligase	gnl|CDD|234866	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.	1.3548e-114
NZ_CP040505.1|WP_005964286.1|1294709_1297001_+|glycogen-debranching-protein-GlgX	gnl|CDD|131155	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP040505.1|WP_131247341.1|1281893_1282637_-|metal-dependent-transcriptional-regulator	gnl|CDD|224240	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription].	2.39255e-41
NZ_CP040505.1|WP_005964290.1|1298581_1300630_+|DUF3416-domain-containing-protein	gnl|CDD|200482	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins. GlgE is a (1,4)-a-D-glucan:phosphate a-D-maltosyltransferase, involved in a-glucan biosynthesis in bacteria. It is also an anti-tuberculosis drug target. GlgE isoform I from Streptomyces coelicolor has the same catalytic and very similar kinetic properties to GlgE from Mycobacterium tuberculosis. GlgE from Streptomyces coelicolor forms a homodimer with each subunit comprising five domains (A, B, C, N, and S) and 2 inserts. Domain A is a catalytic alpha-amylase-type domain that along with domain N, which has a beta-sandwich fold and forms the core of the dimer interface, binds cyclodextrins. Domain A, B, and the 2 inserts define a well conserved donor pocket that binds maltose. Cyclodextrins competitively inhibit the binding of maltooligosaccharides to the S. coelicolor enzyme, indicating that the hydrophobic patch overlaps with the acceptor binding site. This is not the case in M. tuberculosis GlgE because cyclodextrins do not inhibit this enzyme, despite acceptor length specificity being conserved. Domain C is hypothesized to help stabilize domain A and could be involved in substrate binding. Domain S is a helix bundle that is inserted within the N domain and it plays a role in the dimer interface and interacts directly with domain B. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_CP040505.1|WP_005964233.1|1276877_1277840_-|Fpg/Nei-family-DNA-glycosylase	gnl|CDD|223344	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair].	4.14905e-51
NZ_CP040505.1|WP_005964278.1|1292698_1293697_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl|CDD|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	1.22976e-78
NZ_CP040505.1|WP_040314156.1|1281004_1281451_+|HIT-family-protein	gnl|CDD|223611	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only].	1.75291e-24
NZ_CP040505.1|WP_083879490.1|1291436_1292702_-|cysteine-desulfurase	gnl|CDD|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	4.90129e-113
NZ_CP040505.1|WP_005964281.1|1293698_1294490_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl|CDD|238847	cd01714, ETF_beta, The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.	1.33891e-66
NZ_CP040505.1|WP_040314343.1|1277955_1280889_-|leucine--tRNA-ligase	gnl|CDD|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_CP040505.1|WP_051057867.1|1275701_1276310_+|serine-O-acetyltransferase	gnl|CDD|200082	TIGR01172, Serine_acetyltransferase, serine O-acetyltransferase. Cysteine biosynthesis [Amino acid biosynthesis, Serine family].	8.23887e-85
NZ_CP040505.1|WP_005964230.1|1276378_1276870_+|GNAT-family-N-acetyltransferase	gnl|CDD|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.14567e-13
NZ_CP040505.1|WP_005964256.1|1284670_1285231_+|SMI1/KNR4-family-protein	gnl|CDD|379650	pfam14568, SUKH_6, SMI1-KNR4 cell-wall. Members of this family are related to the SMI1/KNR4-like or SUKH superfamily of proteins.	1.01593e-18
NZ_CP040505.1|WP_005964259.1|1285335_1285812_-|peroxiredoxin	gnl|CDD|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	1.02488e-64
NZ_CP040505.1|WP_131247343.1|1284152_1284524_+|PadR-family-transcriptional-regulator	gnl|CDD|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	0.000213018
NZ_CP040505.1|WP_005964273.1|1290318_1291437_-|tRNA-2-thiouridine(34)-synthase-MnmA	gnl|CDD|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	2.36e-179

Protein sequences

>NZ_CP040505.1|WP_005964259.1|1285335_1285812_-|peroxiredoxin
MSKLEVGQIAPDFTAESTHGTIHLAELLKESEKGVIVYFYPKASTPGCTKEACDFRDSLNSLKGIGYSVIGISADQMGPLERFADTQSLNFPLVSDPDHEILESWGAWGEKKNYGRTSIGIIRSTIVIDPAGIVMKALYNVKATGHVARLRRELGIED
>NZ_CP040505.1|WP_005964256.1|1284670_1285231_+|SMI1/KNR4-family-protein
MDRSPLLRGALDSAPQPDEETISEVEKRLGYRLPAAYIELCHHCNGGGFNRDCFPTMEETSWAEDHVAITAYSAIGPDTANSLCGSCGSQFMIEEWGYPPIGIVFGQCPSAGHDVIMLDYCECGPEGEPQVVHVDQEFDYARTLLVPDFASFIKGLVPAEDFEDVEEEERERLHAVESALVGTLPP
>NZ_CP040505.1|WP_131247343.1|1284152_1284524_+|PadR-family-transcriptional-regulator
MPSAQSCPVDSRSDVSEADEFLDDLVESWVEVYKKSATTVFLLRIISKEEELSTAQILTRLSEVSGWSFTERGLYRTLQRLVSNYLLAVDTRPGVRSGLKRKVFTVTDFGRAYLARIEAEYRK
>NZ_CP040505.1|WP_005964251.1|1283746_1284193_+|hypothetical-protein
MNTAPPEAKTTSARRALTPFALSMLAANIGLHIVIALTGNTVGLLTYFGVVLIALGYAVFILVYGKHLKRVRFGSLAAHTMTYASVSGGFLLHFFILAVTANPVLDGESAHFVTAPAWFGVAIAMPALWGVGLTLHALGAILSRGFEK
>NZ_CP040505.1|WP_131247341.1|1281893_1282637_-|metal-dependent-transcriptional-regulator
MTRASAFGAIGAKNSQVAEDYLKEMWGNEEAGGDGISVNDLAARMGVAASTASENVARLTSWGFVTHEPYKKVHFTAQGRQIALGMVRRHRLLETYLHDRLGFEWDEVHEEAEILEHAVSDRLLEHIDEALGWPARDPHGDPIPDADGRIRTGATVPLSEQRQGEWVTVARLSDEDPQGLRNLDEAGIGLDSQIRLARLPNDEDGAGCAGNTGPAGEQVAVDVQDGVGTVNQVLLDETTANLIRVRA
>NZ_CP040505.1|WP_040314156.1|1281004_1281451_+|HIT-family-protein
MSTVFENIISGKWAGRFVWADDLCVVFATIEPTAPGHVLVVPRHVYEKWTDAPASVVAHLVEVAHTIGAVQEKSFDVPRSGLVIAGFEVPHTHLHVIPLRSEADVLLSNAAPASDEALDETMGKLREGLRAAGYGANVPLEMSSPTLA
>NZ_CP040505.1|WP_040314343.1|1277955_1280889_-|leucine--tRNA-ligase
MSQTPGMEPAQRYTAELAGTIEKAWQDRWDEWGTFNADNPVGELAGPLAQEKPFFLLDMFPYPSGKGLHVGHPLGYIATDTVARFRRMKGENVLYTMGYDAFGLPAEQYAVQTGQHPRVTTEENIANMRRQLRRLGLSHDRRRSLATTDTEYVHWTQWIFLQIFNSWFDPEATAPDGSQGAARPISELEDKLASGEVAVPDGRSWAELDRIERAKVVDSFRLAYVSEAPVNWCPGLGTVLANEEVTSEGRSERGNYPVFTRNLRQWMMRITAYGKRLADDLDTIDWPEKVRAMQRNWIGRSEGATVTFEVPEAKAAGASQASLDVYTTRPDTLFGATFMVVAPEHPILGGTLAGNADDAAQLSVPDSWPEGTKEEWTGGAPSPREAVAAYRAQAAAKTESERTDEERVKTGVFTGFFGINPVNGRPIPVFVADYVLWGYGTGAIMAVPAHDDRDWEFARKYALEIIRTIGPAKDPYSHNLDESAFTGDGLAVDSSNEEISLDGLAKDEAKTAMTEWLETKGLGRSTITYRLRDWLFSRQRYWGEPFPIVWDEDGLPHALPEEMLPVDLPEITDYSPRTFDPEDANTAPEAPLSRAEEWVKVELDLGDGVKTYRRETNTMPQWAGSCWYEMRYTDPKNPQALADQENLNYWMGPREGKPTGGTDLYVGGVEHAVLHLLYARFWQKVLFDLGHVPDAEPYHTLFNQGYVQAYAFKDARGQYVPADEVEGEESSGFTYEGEPVTREYGKMGKSLKNIVTPDEMYDAYGADVFRVYEMSMGPLDVSRPWETRAVVGSQRFLQRLWRNTVDEESGEPSICEEPADLETKRLLARMIADVTVEYENMRVNTAISKLIVLNNHLTGLKSVPREIIEPLILMLSPVAPHIAEELWMRLGHSQSLAREPFPIVEDESLLVEDSVTAIVQVNGKVRAKLEVPPSISEDELRERALAQGPIVKILDGRDPVKIILRAPSLVNLVVPRG
>NZ_CP040505.1|WP_005964233.1|1276877_1277840_-|Fpg/Nei-family-DNA-glycosylase
MPEGDAIRRLASTMNELFTGGSVLASSPQGRFAASAEKINGRVLERIRVHGKHMFIGFVPPEAVGSEPQEWMHIHLGLYGWWRFNGDESVVDEGHGVAHRIAPVAKGEWDGHSETRWGEGYGQAAKGEWEPPEPVGQVRFRMYNEHAVADLIGPNRCELISNEERIAAQAKLGPDPLDEGAREDREAAKRFAEVAHAKKRAIGEIVMDQAIIAGVGNIYRADALFLAGISPYRKGSNISAKRLTDLWVLICDLMNRGLAAGRLETMDPLEAPNPPLEGDEEASRWYVYHRTGRPCLRCGTPVREALMQNRRLFWCPSCQR
>NZ_CP040505.1|WP_005964230.1|1276378_1276870_+|GNAT-family-N-acetyltransferase
MEQRTLHAPVNALTDVDRPAGVEIATLTRYDIPVLAVLTLDAYGDPTTAEALLETSEELRLTFDGAFGPTTEDSFVGAWDGGTLVGAILVVRESPWDDAPDGPFVVDLVIDPEYRRRGIATALIAEVASRCKDWGFDSLALRIDGRHSGAAELYDDLGFEEID
>NZ_CP040505.1|WP_051057867.1|1275701_1276310_+|serine-O-acetyltransferase
MVMNPLRAARLLKEDLHTACHRDPAATSALEVALTYPGVHALWAHRLSHALWVRKVKLPARILSSISRSFTGVDIHPAAVIGRRVFIDHATGVVIGATTEVGEDVVIFHGVTLGGVSMTPGKRHPTIGSHVMIGAGAKVLGPITVGDGVKIGANAVVVKDVPCGSVAIGVPAKLLPKPCQDTKDDDLIIDPVYFLDEPELYI
>NZ_CP040505.1|WP_005964264.1|1287309_1288356_+|hypothetical-protein
MAGVPWYRSITAITALVVMSEAGLLGVLVLVPRLFEVDALSSATRLLLVILPIVYALAVGASYSYWLVWRLRDIRLWRFAVLNDHYFSDAIETGPGVRPSALAGTGFPKNMRIVMRAVFGGHDERYGEIMVGRSRAMRSETANRVNLRRPFAFARMDLPAKSPHVIVRNRRSPILSLAGLSTGTQVDLLPEGDPDHGFTVLCPQGFEQEALRLFTSEVLRTLWISARSCEFELIDDELYVYFAHSTPLWKPEAMEQLQTTLALLRRRVVERIPRRFDSEQALKLGAAPMHGTWGSPGSSPHRVDLSGRRIINKDGVSAMTWVFLLGVLLFNALVTVFVRFVLPILLQG
>NZ_CP040505.1|WP_005964267.1|1288734_1289427_-|hypothetical-protein
MKKYNPIHEFVGFVERLCKAGGTVGQALSVLARDGEDKWEVQARGMNLFLRTRELLTMSGRLEANAQVLDVMRNAFITPDDCWDTNVVPEVDAFALTALRNVADAEDITPHLPPVLGTAELDTLQEALEEMRKMLGGATELPENVRWYMLSLINQCLDIISGGSIDFVLLRSITLETYGMGILTSAHLKRERRGLFVQSLPRMVDKWFLGFTVPTARGIAAQTTTDFIGD
>NZ_CP040505.1|WP_131247344.1|1289501_1289915_+|hypothetical-protein
MSCIVRPSSLNSATAHLFCASIFSGWASIFSGCFCGLGGSLDCFGGLLYSTVDGKDDFSGARGIVVKLFGPHRPEIFGLELRFDQNIASRVLGLPVDGSRERPPASVAVGESAVFVDDRALSSLTIGNALGATEPFF
>NZ_CP040505.1|WP_005964273.1|1290318_1291437_-|tRNA-2-thiouridine(34)-synthase-MnmA
MRVLAALSGGVDSAVAAARAVDAGHEVVGVHMALSSQPQECRIGSRGCCSLEDAADAARAAEVMGIPFYVWDLAEDFEERVIADFVEQYALGRTPNPCVRCNEFVKFRELAQRARALGFDAVCTGHYASIREGESGRELHRGADPLKDQSYVLAVMGREELSRVILPLGEVATKAEVRAEAEARGLGVSNKPDSYDICFIPDGDTQGFLRARLGFAPGDIVTSEGELVGRHDGYWNFTVGQRKGLRLKNPAADGRPRYVIETRPDTNQVIVGAAELLSVERIEANDVVWLAEDDMAEECRNLFVQVRAHGVPAAVSGLVHEDREAARVMGVEGGILVSLAEPIRGVAAGQSLVVYRGSRVLGEGTILRASRG
>NZ_CP040505.1|WP_083879490.1|1291436_1292702_-|cysteine-desulfurase
MTHYLDYAATCPLRPSALEAWTRTQRDLAESPGNPASLHAGGRRARRMLEDARERIGAALGAHRSEVVFTSGATESNALAVVGGARLARCGDPRRSTVLMSALEHDAVKEQSEVLVREGFALELLPLGGSGLVDCDPELLEAMAHRLALASLVSVCSELGTIQPVAGLVEALGGGGKSTERPLIHTDAAQMLSLLPFDFASLGVDLASFGGHKIGAPVGTGVLLVRRALKPVTDRPGGGHERGIRSGTPDVAGAVALAVALEETLAQREEAHRHALHLRAQLLAGLPENARPSVDPADALPSIIHLSLDTWHPEAVLMAMDAAGISVSAGSACHAGVTRPSQMLLAMGATEAEALGVVRVSTGLDTTIEDIDAFLRTLPQAILAGQALDARETRRADRRSASARGARLEGTPMIDSNMKED
>NZ_CP040505.1|WP_005964278.1|1292698_1293697_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MSKSLSRPILVLVDHSGSDAEGWSLSPASAQLVSHARTLSDAGVLVLSLTKDADLVALGRLGVSRVLVPSIGESAPRVSACVADAVIAALEAQDFGAFLVVSTYRGREVASRIATLMDSGVVADATDLEVEDDSLIATTTALAGSWSNRLRVSGSLPVAAVRPGSFDETPAEEPEAAAIEEIQVTPSPEALAVEVLSSSVQAGSGRVSLSEASTVVVAGRGTNGEMDIVESLADELGAAIGATRVVCDEGWASRTLQIGQTGVSVSPNLYIGLGVSGAIHHTVGMQSSGHIVAVCDDPDAPIFEIADFGVVGDLFEVVPQALEAIRAAREEN
>NZ_CP040505.1|WP_005964281.1|1293698_1294490_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MRIIVCVKHVPDTQSERRFEDGRLVRGEDDVLNELDENAVEAAVQLVEEHGGEVIALTMGPEDAEDALMRALQMGADRGVLITDERLAGADAGLTALALAAAIQKINEDGGIDLVVTGMASLDSMTSMLPAALATRLGMPLLGLAHSIEVDPGSGRVTIGRTVDGYDDELAAAMPLVVSVTDQINEPRYPAFAAMKAARKKPMDQVELAELASTPAGALIEGRPRVIEVLETDEVVRESTGTIIPDSGDAGARLAAYLLEVVK
>NZ_CP040505.1|WP_005964286.1|1294709_1297001_+|glycogen-debranching-protein-GlgX
MTRGHSHGHHSTVVQVSDPNPVPGRLGVTRRGNGLDVAVVARAATTVEFCVIEPEGSETRYRLLPSNEGIWHGHIEGRGTGTRYGFRVHGPWDPDSGLFHNPAKLLLDPYARGLEGTVDMVPAVYAHMVDEDLYPTHHPFKRSPLDSRGHVPYSVVVDNRFAVAPKPRVPWEKTILYEIHVKGFTKNMPGIPPELQGTYAGLAHPVCVAYLKELGITSIELLPIHAKCEEPFLSERGLTNYWGYSTLSFFAPEASYATRAAQINGAQAVVDEFRGMVSILHQAGIEVILDVVYNHTCEGGDGGPSLCWRGLDSDLYYRHTNTHPVQNIDDTGCGNTMNVDKPRTIAMVLDSLRYWTTSMGVDGFRFDLAATLGRFSTGFSPMHPLLVGMATDPEISTSKLIAEPWDIGPGGWQTGNFPAPFSEWNDHYRGVLRSFWLSDVQALVEGRRASGPNNLATRLAGSRDVYDHGVGVGRGPRASINFVTAHDGFTLADLTAYNAKHNWANLEGNRDGSDDNRSWNHGIEGPVTSRERATIAGASSEAEDGRALTFRRRRRTQRNLLTTLLLSSGTPMLVGGDEFARTQNGNNNAYCQDSPISWVDWELTAEQIDQKEWTKWLIALRLAHPVLRPSIFATGMPFPGDTIPDLSWYTASGAPMPSEGWSKEENRVFQMLRSGASWHDRDALLIVNGTLEAAEVTPPEGHGFDWLLTVDTAWPNLDEALPKGIKAAELSLDLKQVASGEAFEVAPASVRLLMSDVSYSPRR
>NZ_CP040505.1|WP_005964289.1|1297180_1298281_+|tryptophan--tRNA-ligase
MTTSEDALANSTSDASLARSKERSAQIDLAIDEDPSRFRILTGDRPTGHLHLGHYFGTLRNRVLLQDRGVETWVLIADYQVITDRDGVGPIRERVLSLIADYLAAGIDPKHSTIFNHSAVPALNQLMLPFLSLVTESELHRNPTVKSELEASDGRAMSGLMLTYPVHQAADILFCKANLVPVGQDQLPHLEQARLIAQRFDKRYGRATPERPVFPRPEALLSEVPLLLGTDGLKMSKSRGNTIELGMSADETAKMLKKAKTDAERMITYDPKNRPEVSNLLMLASLASGQDPLVIADSIGDRGAGALKALVTEFLNEMLAPIRARRAELIANEDYLLEILHEGNERANAQADETLLEVRQAMQMNY
>NZ_CP040505.1|WP_005964290.1|1298581_1300630_+|DUF3416-domain-containing-protein
MSDNLLPRIPVTELFPVVEGGCIPAKATENEPFPIRATVFREGHDAYAAEAVLIDPKGKEHSRAPMSDIAPGLDRYEAWVMPDRPGDWGFRVDSWSDPYATWRHDAAIKVDAGVDVDLMLEEGARLFERAITGTAILNPTQEPLSPEETAVLEDAAAHLRDSSRSPQQRLSAGLSSRVRAVFRAHPVRDLIGSSRTYPLQVARSRALSGAWYEIFPRSAGAFQRPDGTWVSGTLKTAATELERIADMGFDVVYLTPIHPIGVTNRKGKNNTLVALEGDPGSPYGIGAEAGGHDAIHPELGDFNDFDAFVDRARSLGMEVALDLALQCSPDHPWVKSHPEWFTTRADGSIAFAENPPKKYQDIYPLNFDNDYPGIYAAVREVLEVWISHGVTIFRVDNPHTKPVRFWQEIIADVKRTHPNIIFLAEAFTRPAMMRTLGAVGFDQSYTYFAWRTTKDEIESYLDELAHETAHVLRPTFWPTTHDILTAQMTTGGTAIFAIRALLAALGSPNWGIYSGYEFIENVQRPGFEEQNDNEKYEFRPRKWEEAESIGITKLFTLLNAARAKHPALRQLHSLKIHPTSHPGIICFSKQVPARFTESGQPDTVICVVSLDPHQGVSGTVEIDVSSLGVDAPGGLFKVVDELDGRTYTWGANNWVDLSPVTRLGHVFSVEPATDFDPWTSGH

Crispr_ID: NZ_CP040505_29

• CRISPR_ID: NZ_CP040505_29
• CRISPR_location: 1349233-1349311
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP040505_29

Consensus_repeat	Method
CTCCCCTCCGAGCCCCCGACTCCC	CRISPRCasFinder

spacers of NZ_CP040505_29

>29.1|1349257|31|NZ_CP040505|CRISPRCasFinder
CTCCAGGCCTCGACTCCTCTCCAGACACTGG

CRISPR arrays and Neighbor proteins around NZ_CP040505_29

CRISPR arrays

The CRISPR arrays of NZ_CP040505_29

>merge|NZ_CP040505|29|1349233-1349311|CRISPRCasFinder
CTCCCCTCCGAGCCCCCGACTCCCCTCCAGGCCTCGACTCCTCTCCAGACACTGGCTTCCCTCCGAGCCCCCGACTCCC

>NZ_CP040505|29|26|1349233-1349311|CRISPRCasFinder
CTCCCCTCCGAGCCCCCGACTCCC	CTCCAGGCCTCGACTCCTCTCCAGACACTGG
CTTCCCTCCGAGCCCCCGACTCCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005964435.1|1359885_1362621_+|valine--tRNA-ligase	unknown	unknown	gnl|CDD|380147
NZ_CP040505.1|WP_040314358.1|1351274_1352252_-|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl|CDD|236130
NZ_CP040505.1|WP_005964425.1|1354847_1356788_+|DUF853-family-protein	unknown	unknown	gnl|CDD|283518
NZ_CP040505.1|WP_040314356.1|1347261_1349118_-|elongation-factor-4	unknown	unknown	gnl|CDD|235462
NZ_CP040505.1|WP_040314171.1|1349369_1350419_-|hypothetical-protein	unknown	unknown	gnl|CDD|213185
NZ_CP040505.1|WP_005964403.1|1341992_1342907_-|DUF3097-domain-containing-protein	unknown	unknown	gnl|CDD|378628
NZ_CP040505.1|WP_005964410.1|1345187_1346441_-|coproporphyrinogen-III-oxidase	unknown	unknown	gnl|CDD|180172
NZ_CP040505.1|WP_005964419.1|1352277_1353840_-|ComEC/Rec2-family-competence-protein	unknown	unknown	gnl|CDD|377126
NZ_CP040505.1|WP_005964422.1|1353836_1354655_-|ComEA-family-DNA-binding-protein	unknown	unknown	gnl|CDD|224472
NZ_CP040505.1|WP_005964389.1|1336381_1337719_-|C1-family-peptidase	unknown	unknown	gnl|CDD|238328
NZ_CP040505.1|WP_040314173.1|1357820_1359104_-|amidohydrolase-family-protein	unknown	unknown	gnl|CDD|238624
NZ_CP040505.1|WP_005964397.1|1339686_1340802_-|J-domain-containing-protein	unknown	unknown	gnl|CDD|274090
NZ_CP040505.1|WP_005964395.1|1338907_1339690_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl|CDD|236959
NZ_CP040505.1|WP_005964428.1|1356894_1357713_+|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl|CDD|237008
NZ_CP040505.1|WP_040314175.1|1359100_1359679_-|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224228
NZ_CP040505.1|WP_005964406.1|1343020_1344988_-|oligopeptide-transporter,-OPT-family	unknown	unknown	gnl|CDD|273239
NZ_CP040505.1|WP_005964413.1|1346437_1347265_-|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl|CDD|234649
NZ_CP040505.1|WP_005964400.1|1340869_1341889_-|heat-inducible-transcriptional-repressor-HrcA	unknown	unknown	gnl|CDD|234621
NZ_CP040505.1|WP_005964416.1|1350851_1351115_+|30S-ribosomal-protein-S20	unknown	unknown	gnl|CDD|178943
NZ_CP040505.1|WP_005964392.1|1337859_1338759_+|aldose-1-epimerase	unknown	unknown	gnl|CDD|237918

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005964435.1|1359885_1362621_+|valine--tRNA-ligase	gnl|CDD|380147	NF000540, alt_ValS, valine--tRNA ligase.	0
NZ_CP040505.1|WP_040314358.1|1351274_1352252_-|DNA-polymerase-III-subunit-delta	gnl|CDD|236130	PRK07914, PRK07914, hypothetical protein; Reviewed.	1.4038e-52
NZ_CP040505.1|WP_005964425.1|1354847_1356788_+|DUF853-family-protein	gnl|CDD|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	7.33762e-167
NZ_CP040505.1|WP_040314356.1|1347261_1349118_-|elongation-factor-4	gnl|CDD|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_CP040505.1|WP_040314171.1|1349369_1350419_-|hypothetical-protein	gnl|CDD|213185	cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system. The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.	0.000586716
NZ_CP040505.1|WP_005964403.1|1341992_1342907_-|DUF3097-domain-containing-protein	gnl|CDD|378628	pfam11296, DUF3097, Protein of unknown function (DUF3097). This family of proteins with unknown function appears to be restricted to Actinobacteria.	7.95215e-136
NZ_CP040505.1|WP_005964410.1|1345187_1346441_-|coproporphyrinogen-III-oxidase	gnl|CDD|180172	PRK05628, PRK05628, coproporphyrinogen III oxidase; Validated.	0
NZ_CP040505.1|WP_005964419.1|1352277_1353840_-|ComEC/Rec2-family-competence-protein	gnl|CDD|377126	pfam03772, Competence, Competence protein. Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site.	1.57848e-29
NZ_CP040505.1|WP_005964422.1|1353836_1354655_-|ComEA-family-DNA-binding-protein	gnl|CDD|224472	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair].	8.18119e-23
NZ_CP040505.1|WP_005964389.1|1336381_1337719_-|C1-family-peptidase	gnl|CDD|238328	cd00585, Peptidase_C1B, Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure with the active sites imbedded in the central channel. The bacterial homolog of BH, called pepC, is a cysteine aminopeptidase possessing broad specificity. Although its crystal structure has not been solved, biochemical analysis shows that pepC also forms a hexamer. .	0
NZ_CP040505.1|WP_040314173.1|1357820_1359104_-|amidohydrolase-family-protein	gnl|CDD|238624	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	3.26788e-62
NZ_CP040505.1|WP_005964397.1|1339686_1340802_-|J-domain-containing-protein	gnl|CDD|274090	TIGR02349, Chaperone_protein_DnaJ, chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.	2.58592e-144
NZ_CP040505.1|WP_005964395.1|1338907_1339690_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl|CDD|236959	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional.	4.09852e-63
NZ_CP040505.1|WP_005964428.1|1356894_1357713_+|pyrroline-5-carboxylate-reductase	gnl|CDD|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	1.44491e-71
NZ_CP040505.1|WP_040314175.1|1359100_1359679_-|TetR/AcrR-family-transcriptional-regulator	gnl|CDD|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.89095e-07
NZ_CP040505.1|WP_005964406.1|1343020_1344988_-|oligopeptide-transporter,-OPT-family	gnl|CDD|273239	TIGR00733, TIGR00733, putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP040505.1|WP_005964413.1|1346437_1347265_-|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl|CDD|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	3.13917e-54
NZ_CP040505.1|WP_005964400.1|1340869_1341889_-|heat-inducible-transcriptional-repressor-HrcA	gnl|CDD|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	3.32822e-122
NZ_CP040505.1|WP_005964416.1|1350851_1351115_+|30S-ribosomal-protein-S20	gnl|CDD|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.25119e-29
NZ_CP040505.1|WP_005964392.1|1337859_1338759_+|aldose-1-epimerase	gnl|CDD|237918	PRK15172, PRK15172, aldose-1-epimerase.	2.78415e-118

Protein sequences

>NZ_CP040505.1|WP_040314356.1|1347261_1349118_-|elongation-factor-4
MPIPTPTQVESIRPAHTEQSRIRNFCIIAHIDHGKSTLADRMLQLTGVVEQRDMRAQYLDRMDIERERGITIKSQAVRMPWALGDEAYALNMIDTPGHVDFTYEVSRSLAACEGAVLLIDAAQGIEAQTLANLYLAMENDLAIIPVLNKIDLPGAQPEKYAAEVAALIGCEEDEVLKVSGKTGEGVCELLDRIVEVVPAPTGNPDAPTRAMIFDSVYDTYRGVVTYVRVVDGRLSTRQRVKMMSTMASHELLEIGVISPEPTPAEGIAAGEVGYLITGVKDVRQSRVGDTITSHIAGAQEPLVGYQDPKPMVFSGIYPVDGTDFPNLRDALERLQLNDAALTFEPESSAALGFGFRCGFLGLLHLEIIRERLGREFGLDLIATAPNVVYTVKAEDGEEIRVENPSAFPEGKISEVREPLVDATILTPTDFTGTVMELCQERRGTMKGMDYLSEERVELHYSIPMAEIVFDFFDQLKSRTRGYASLDYQENGEQVADLVKVDILLNGERVDAFSAIVHKDAAYGYGQKMTKRLKELIPRQQFEIPVQAAVGARVIARETIKALRKDMLAKCYGGDISRKRKLLEKQKEGKKRMKSIGRVDVPQEAFIAALTSDVPSGKK
>NZ_CP040505.1|WP_005964413.1|1346437_1347265_-|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MKGVSERASLRSGGAKAGEVFLARTKSFTRRSRELPANLQRTWDEHASHYVIEVERGLGYTTVADSVHFDPEKLFGRRSPLTIEIGSGTGEQIVEAARTHPDRDYLAFEVWVPGIAKLISKAVGAGVENIRVVEADAQLALPIVFDEAIAQEVWTFFPDPWRKARHHKRRLVSADFAPEVARVLEDGGLWRLATDWDDYAWQMRDVIEGCELFENPYEGERPDPNDPEPLRGGFAPRFSGRVETHFETRGIDAGRRAHDLVAVRLPREGASSEDE
>NZ_CP040505.1|WP_005964410.1|1345187_1346441_-|coproporphyrinogen-III-oxidase
MSPASPEGSAWPEDGSLEAALAERDSCRPLSLYVHVPFCSVRCGYCDFNTYTTGFGPGAAPGDYAPSILAEARLATRILADAGWAPRAASTVFLGGGTPTLLASSELARILDHLRSTFGIAEDAEVTVEANPDSIDAQGLEELRAAGVTRVSFGMQSAVPSVLATLDRTHDPERVPIVVEAAKDTGLDVSLDLIYGAPGESLEDWRRSVEVAIGLSPDHISAYALVIEEGTKMGRMLSRGAIPEPDSDEEAAKYELADAMLAQAGYRWYEISNFARAQRGEDDMVASELRYASKHNLAYWRDCDWWGLGPGAHSHVGRYRWWNLKHPRAYASRVSAGMSPAAAGEILDADSRSLEKVMLAVRTAEGLAIADVPNPQAIDDLSAEGLIEKKAVLDSRIVLTLRGRLLADAVTRRLMGF
>NZ_CP040505.1|WP_005964406.1|1343020_1344988_-|oligopeptide-transporter,-OPT-family
MSCPQTESTGVSIRELTIRGIVIGGMITIIFTAANVYLGLKAGLTFATSIPAAVISMAILRYFKDHSVQENNIVQTIASAAGTLSAIIFVLPGLVMIGWWQGFPYWQSVAVIALGGVLGVMYSIPLRRALVTHSDLPYPEGVAAAEVLRVGDSTEGEEESRRGLLAIIKGAVTSSGFAILSSAKAVGTEIGTVFTVGAGGTMASASLSFALLGVGHLVGIAVGIAMIVGLLISYGVLLPMRSWGLVGDPASASELVSTIFRSEVRLIGAGAIAVAAVWTLLKLLAPIIGGIRDSLASSSKRASGEVLPLSEQDLSGKVVIGVTIGSMLPIGVLLWLFLKDTPLVHHWIGLVLVSILFILITGLAVASVCGYMAGLIGASNSPISGVGILVAIAAALVVKAVHGTITGDELSVLVAYTLFTAALVFGIATISNDNLQDLKTGQLVGATPWKQQLALIIGVGFGAIIIPPVLNLMHRAFGFQGAPGAGQNALAAPQASLISDLIKGVFGGDLNWGLLGTGALIGMIVIIIDEVFKRATKRLSLPGLAVGMGMYLPMAITIVIPIGALLGLLHDQWAERQTDPEKAKRMGTLVATGLIVGESLWGVVYAGIVGFSGKDTPLALFGESFATPAQWIGTILFVAAATYLYKDMRSKAKAH
>NZ_CP040505.1|WP_005964403.1|1341992_1342907_-|DUF3097-domain-containing-protein
MASDFFDPYGSDVLSNDPHREGPNAIRPRSTRVHLEVGMVLEDVASSWVGAVVRVEKSGGVHLVELEDRRGRTRSFPLGAGFWLEGRPIIALPPRPTPMEQAKNASGLTTARGRALTNSGSIAAPKSAARVARASRIWVEGRHDAELVQHVWGDDLAEAGVVVQLLEGVDKLEEVLEVFGPNDRVRAGVLVDHLVPGSKESRIAEAVTRRWREGVLVLGHPYVDIWQAVKPSRLGLEAWPQIERGIDIKHGTLEALGWPHENQVDIAMGWKRILSRVRNYKDLEPALLGRVEELIDFVTAPGLS
>NZ_CP040505.1|WP_005964400.1|1340869_1341889_-|heat-inducible-transcriptional-repressor-HrcA
MSDDRRLDVLCAIVSEYVHTREPVGSKVIAQQHDIGVSSATIRNDMALLEEAGLIYQPHTSAGRVPTDKGYRVFVDSLASVKPMSGPERNAVESFLTDSCDIDEVVAKTVRLLAQVTRQVAVVEYPTLVRERLRRCELVDLGPRLLVIVVTLSGHVEERMLEFPAPLAPETITLLREQLNALWEGRSAEEILPRIDEALSACPPAQRMIAEAVCTALVDLLQATGESRIAIAGMSNLARGAIDFRDIAPLLDALEEQVVLMRLFAELGADDDIHVSIGTENPHDALIEASVVAGTYRSFGQSGDGLAHLGIVGPTRMDYARTMSAVRAVAAYLTRFLDR
>NZ_CP040505.1|WP_005964397.1|1339686_1340802_-|J-domain-containing-protein
MNDYYEILGVTRDASQDEIKKAYRKKARQLHPDYAGPESEEAFKELSIAYEALSDPEKRRLYDAGGADALRGGASPFQGAGGFSDFFDAMFSGFSGASSGPTPRRRRGADQLIGVDITLKEAVFGTQKTVSFATYIECETCHGSMCAEGTQPVTCSNCGGSGTVTRISNTMFGQMQSRAACGACGGYGTIISSPCQECAGQGRVRSRRSYPIDIPAGVTEGTRIRVPNKAEVGPGGGPQGDLYLEIRELTDEVFVRRGDDLHMWTTIPMTTAALGTDFMLSTFDGERTVTIPAGTQPGEEIILKELGVGRLQRPGRGNLHVHIEVEIPKKLDARSRELLEELAALRKEGRVEPQRRDHSMFEKLKEKFAGQ
>NZ_CP040505.1|WP_005964395.1|1338907_1339690_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MTRPVFYFSDPASELSQVQPGEVLRLGAEEGRHAATVRRIREGEGLDLVDGHGTRALCEVVSADKQGLDCRLLSLEYEEAPRVRLVLVQALAKGGRDEQAIEICTAIGIDGVIPWQSDRTIVRWAGAKAKKGRAKWENTVRAAAKQARRAWVPLVEDVVDSRGLLQGIETLICQGGRAFICHEEAVETLSVHLRTHPLTECEPGGEIWIIVGPEGGICPEETSAFEQAGAELIGLGRNVLRSSTAGAVCLTLLSAALNRL
>NZ_CP040505.1|WP_005964392.1|1337859_1338759_+|aldose-1-epimerase
MSTRSASGREIVLESGDYRARIVTVGAGLAGLSLAGHDLVIPHSVEEIPAGHLGKMLLPWPNRIADSTYEWNGARYEVDRTERSTGAALHGLMSWVEWDIVHADQDSATLGAFLAPRKGYPWALETWVTYALNADSGLSVSVHTKNIGTQAAPYGVSSHPYVTLNGAPNDSYELSIPATSILEVDEKLTPVGKRPVAEMGRDFTRPRILGDLTIDHAFTDLPEGEWTVTIRDPESGMSVALSSDAKWVQVYTAEVLDREGIAVEPMTCPPNAFNSHEDLIVLEPGHSHTLTFSIRGSLS
>NZ_CP040505.1|WP_005964389.1|1336381_1337719_-|C1-family-peptidase
MALIDELDSARLDALFASTGDEASRIARNAVTNAGIDAACLDRAKVVGTPTVMSHRLDQWKATSQKKSGRCWLFSSLNLLRDTTRERIGVKDFEFSQNYVLFFDKLERANYFLRDMVACASEPVDSRLVQFLLSEVLGDGGQWDMAVSLYQKHGLVPKEAMPETQSSSNTSRMNTRLQVLLRRSALEVRELLASGASPEEVEALISTVLDAVWRILVICLGEPPRSFDWEWRDDAGEFHRDGTVTPKEFFDRYVGVDLSEYVCLVDDPRRAHAKGQALTVEHLGNVIGGRQIRYINTEMATIKKIASRMIARGEPVWFGADVSQQSERDLGLLVEELHDYSGLFGVDLKTTKEQRVLSGESAMNHAMLFTGVDIDEDGHPRRWRVENSWGEDVGEKGFFTMDDAWFSEYVFEVVVKISELPDELRPAVTSEPLVLPAWDPMGTLA
>NZ_CP040505.1|WP_040314171.1|1349369_1350419_-|hypothetical-protein
MSMKTGSPTNAATTQDQEETSAPRISPEQAGIEMALDLASKGDLEGALQLGRVLLDELEESEEPLARMAFYRLLVEWSSQLERPMDCKKFASRAVQWGSRTLGETSQAVLMARNSELYWMCEVGYDRLAARRFPALLEDVSRALGADSELAWAVRVNSAMPLKASGDFEGASMLYRELIVDMARILPADDVLLMTVRDNLAEVLELAGHYGEAKVIFDSLLEEAKRLWGGEDPRVLRIRTEIARLRFLLGDEEGAVEEWKELGELSTRLLGRHHPRSVQIFSLLLAAALDLEDEEMVKEVAERFISDPPPEFDALDLEGFALLLGEEAVRKSVRIRGAGRSGEEDGIVS
>NZ_CP040505.1|WP_005964416.1|1350851_1351115_+|30S-ribosomal-protein-S20
MANIKSQIKRIRTNEKRRLRNQSVKSELKTLVRKTREAVEAGDKEAAVECLRAASRKLDKAVSKGVIHKNQAANRKSKLARRVSKLG
>NZ_CP040505.1|WP_040314358.1|1351274_1352252_-|DNA-polymerase-III-subunit-delta
MAAPRGKKIPVPVELAPVVLIKGKEGLLIDRAMATLRAQAYEQDPNLERSDVQASNYQAGHLDVLTSPSLFGEARLILIPELEQMTGALADDLLEYVSSPAPDVWIIAIHPGGNAAGKRVVEAIAKAGFPVISAEEIKNDRDKLELIKEEVRSAHRRMNADAMQAIVDALGSDLRSMMAAVNQLLTDVEGNVTVEDVRRYHAGRIEASGFDVADAVIAGDAARALTLLRHAFATGVEGIPIVAAIAMKIRAMAKVSASGTGKGLGMAPWQIDRARRELRGWSDPSLAGAIKALALADEELKGASKDPQRAVEKAVITLCRLHSRP
>NZ_CP040505.1|WP_005964419.1|1352277_1353840_-|ComEC/Rec2-family-competence-protein
MSSTEHAAIPIMMDWRLFPAALTTWACTWWAVSRSWGWAHSLLILGLFIVAAASTHSLRSTPRVGGRHQLTPAGSIRSALLALAAAGLAALAVGGLACASFQSCEANEAATRGALITLNGRVDADPKSSHGSFGARKEQVNITILSVGKEELPSPPVRLMLRISGGHELYRGDIVRVRGLIDPTFPGALPYAGSMSTTPVLLERPGGYVGITRRFRLHLERAVEGLDDQGRALVPGMAIGNDRAMSEELEEAFRASSLSHLTAVSGSHMAIVLSSVPLLLPRSRRARIFGALTVLVLLVMVVGPTPAVMRAAVTSTAGILGQALSRGGQGLAALSLTVLVIVLLDPWAVRDFGFALSVCATFAVVVPAAACRRWGKKHLKVKSRVGRFFNRLFELVCVSAWCQIMTIPILLLLDPAFPVYSLAANIAAAPAVAPATLLSLSAALAAPFSLQAGKVLAVLASYATAWIAKVALVFSSLPGARSEPKDLIGVVLIALVLGVGVVIFRLFRVRARNAWGTCDT
>NZ_CP040505.1|WP_005964422.1|1353836_1354655_-|ComEA-family-DNA-binding-protein
MDLLRRLRLKRLTRAVYSAKECAARERPERVIRLLPSPLSALALVLLLLVLAVFGIVRAQIPGNAHAIESASDSRQEPEDEQSGLRMDEEYGRGGTQKDTDAEGRESSEASGSASSLPRGGKKDTPLLIIHVAGAVGDPGVVHVPAGSRVIDALNAAGGALHEANLDAVNLARPVNDGEQILIPTIGDLGTNALGGTQASAHPQGASASSCVDIRTADAAAFETLDGIGPKLAQRIISFRESSGPFESVEDLDAVPGIGPALLARLREGVCQ
>NZ_CP040505.1|WP_005964425.1|1354847_1356788_+|DUF853-family-protein
MSENIDDLKAQLAEAEARAKQAEAEAARAQAEALRLKLEAISAAGSDSLGEPDPAGAQSSPQEPSPQETAPQVPSQGQSSAEDSSPQEASSSDPSPSSSAFIDEIRRAYDFSTPSITIGTLLDGTTRVVGTTTKMPLSMFNRHLLVAGATGTGKTRTLQLLSEGLSAAGSSVLLCDVKGDLSGLAEKGASSEKLLARTSANGQDWTPDSFPIDLLTLGDAKNQFTGIPIRTSLSDFGPLLLARALGLNSTQEQALQLIFAWADKEQLELIDLPDLRTVISFLTSEEGSPEFANIGGVSKATAGVILRALTVLESQGAEQFFGAPSFDTHDLLRLSPEGRGVISLLGVGDISQRPALVSALIMWLLADLYSTLPEVGDLERPRLVFFFDEAHLLFADATKEFIRQVVQTVRLIRSKGVGVVFVTQTPKDIPADVLAQISSRIQHGLRALTPDEQKRLKASVQTFPNTSLDLAEILTNLGTGQAVVTVLNEHGTPTPVSPTSMWAPVSLMGPASAQTLALTLSASPIASKYSTAVNPDSAQEKLMQRIEEAEVEKARLEAEKRELLEAEKAAAMQAKQEEKERAALERALAKEKERAERAEERAREKAEAERQRKSERRAKQVESVIGQVLRTAGSEITRSVFGTRRR
>NZ_CP040505.1|WP_005964428.1|1356894_1357713_+|pyrroline-5-carboxylate-reductase
MRIGFIGSGAMVAAIARGGVAAGMNASDFLFTDAHGVHAPALAAELGASVASSNGSLAHQVDILVLGVKPHVQSAVIKMIAHIVRERPEMCVVSLAAGRTVESIAKDFGAAVPIIRVMPNVNAQIGRSMSAICSLGASEEQVAAVEALMNKVGRSIRIEEKDFPAFQALAGCSPAWVFQIIEALARAGVKHGLTKEVSVAIAAQALAGSADLVLEASEQGTVPSELIDRVCSPGGTTIAGLLAAEAQGMSTCLISAVEAAIARDAEISTRTR
>NZ_CP040505.1|WP_040314173.1|1357820_1359104_-|amidohydrolase-family-protein
MKTVISNVRLIDGTGRAARDGMTVAIEGGRFTRITPSKVSIAQAQRIDGTGKALIPGLIDAHKHIMNNGGDHMAVGLTPRGVFDNLATMLRGGVTTILDLGSADIIHVLRHAPVVRPRIHTAISIVTNPGGYPAEYMPRRFYRMGAVRECQSPAQIRRTVRRLARVGVSAIKTAVVSRTFDGKPVRGWSDAQLNALTDEAHRHGLMVCAHLTYAADYVQAARCGVDSVHHAAFDGVITDRVADELIEAGVVFVPTLSLASLLIDGMQYRWCDDPQFTAGLPPALVRNMREFTTHYEQCPPDEPVPGFFVSLPKREWEAVPENQLRNVAKYIERGGTIALGTDSALGFSLHGTPVREMELMVEAGLNTVEAIQAAGQNAARVFSHKENIGTITPGALADCLLVPAEITASMTHLADISTVIQGGKVIR
>NZ_CP040505.1|WP_040314175.1|1359100_1359679_-|TetR/AcrR-family-transcriptional-regulator
MPLMRFSRLPEHKQAALLDAAEIRLAQAGRVPVSWNELLEAMQLPRASAYTYFDGREDLVDTLIRRVTERLGTSLGQWETVETQEELWEQWECSVQRALRFLSEHPSAGTILRTYLIPSRIPVIREWILTAFDNARAIGMVNDDLPRDLVADSTLALLGVLDAWAIEQVESQGEYPDFSTVHALISRLWGEK
>NZ_CP040505.1|WP_005964435.1|1359885_1362621_+|valine--tRNA-ligase
MGERPDTTATSVPAPKVPERVGAEGLEAKWGKTWEEDGVYAFDRTAVREQVYSIDTPPPTVSGSLHVGHVFSYTHTDVVARFQRMTGKAVFYPMGWDDNGLPTERRVQNYYGVRVDPSLPYVEDFVPPHEGGEGKSIKARDQQPISRKNFVELCERLTVEDEAQFEALWRYLGLSVDWKQNYQTIGKRARKIAQAAFLRNLERGEAYQSEAPGLWDITFQTAVAQAELESREYPGFYHRLAFHLCDADAGAKAAALGAPIENGQDVCIETTRPELLAACVALVAHPDDERYKPLFGTKVASPVYGVEVPVLAHPAAEMDKGAGIAMCCTFGDTTDIDWWRDLELPLRAILRKDGRIQAETPEWIVSDGGREAFAEIAGKTTFSAREAVVARLRESGELRGEPVKTVRQTNFFEKGDKPLEIVTSRQWYIRNGGKPWTNPASRLDLNEELVGRGRDLKFHPDFMRVRYENWVTGLNNDWLVSRQRFFGVPFPLWYEVDENGEVDYSKVITPREDALPVDPSTDAPAGYSEEQRGKAGGFVGELDIMDTWATSSLSPELACGWLHDEDLFERTYPMDLRPQGQDIIRTWLFSTVVRANLEFGALPWQHAGISGWILDPDHKKMSKSKGNVVTPMGLLEKYGSDAVRYWAASARLGLDATFDEAQMKIGRRLAIKVLNASKFALTMGGENTALDLDPARISLELDRSVIAELRRVISVASDALAAYDHSRALEVTESFFWTFCDDYLELVKERAYNRDGKWAEDEAVSARTVLAIVIDTVIRLLAPFLPYVTEEVWSWYRPGSIHRAPWPTLEGLEDVAGDPEVLRAASAALIALRRVKSEAKVSPRTPFLKVSLEVPQASKAAIEGVLADLSAASKVEGPFELVSYEAAEDGEAETRVVSFELGEAPAKRKKA

Crispr_ID: NZ_CP040505_30

• CRISPR_ID: NZ_CP040505_30
• CRISPR_location: 1388439-1388527
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP040505_30

Consensus_repeat	Method
CCTTCCTCCACTTGCGTGAAGACTCGGC	CRISPRCasFinder

spacers of NZ_CP040505_30

>30.1|1388467|33|NZ_CP040505|CRISPRCasFinder
TTATACGCAGAGTCTCCCGCCACAAGAGCCTCC

CRISPR arrays and Neighbor proteins around NZ_CP040505_30

CRISPR arrays

The CRISPR arrays of NZ_CP040505_30

>merge|NZ_CP040505|30|1388439-1388527|CRISPRCasFinder
CCTTCCTCCACTTGCGTGAAGACTCGGCTTATACGCAGAGTCTCCCGCCACAAGAGCCTCCCCTTCCTCCACTTGCGTGAAGACTCGGC

>NZ_CP040505|30|27|1388439-1388527|CRISPRCasFinder
CCTTCCTCCACTTGCGTGAAGACTCGGC	TTATACGCAGAGTCTCCCGCCACAAGAGCCTCC
CCTTCCTCCACTTGCGTGAAGACTCGGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005964534.1|1395750_1396524_-|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl|CDD|223257
NZ_CP040505.1|WP_005964536.1|1396893_1398351_-|alanine:cation-symporter-family-protein	unknown	unknown	gnl|CDD|376500
NZ_CP040505.1|WP_005964497.1|1385176_1385956_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl|CDD|153251
NZ_CP040505.1|WP_005964541.1|1401646_1402054_+|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl|CDD|350222
NZ_CP040505.1|WP_005964484.1|1379017_1380052_-|hypothetical-protein	unknown	unknown	gnl|CDD|235906
NZ_CP040505.1|WP_005964481.1|1378229_1378607_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005964539.1|1401347_1401650_+|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl|CDD|376852
NZ_CP040505.1|WP_131247399.1|1384671_1385076_+|hypothetical-protein	unknown	unknown	gnl|CDD|319774
NZ_CP040505.1|WP_005964528.1|1394287_1395469_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl|CDD|224090
NZ_CP040505.1|WP_005964543.1|1402237_1403551_+|CapA-family-protein	unknown	unknown	gnl|CDD|378215
NZ_CP040505.1|WP_040314179.1|1381027_1381945_-|glutathione-synthetase	unknown	unknown	unknown
NZ_CP040505.1|WP_005964537.1|1398505_1401178_+|DUF3516-domain-containing-protein	unknown	unknown	gnl|CDD|378795
NZ_CP040505.1|WP_005964509.1|1389195_1390596_-|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl|CDD|235490
NZ_CP040505.1|WP_005964487.1|1380655_1381009_-|metallopeptidase-family-protein	unknown	unknown	gnl|CDD|240572
NZ_CP040505.1|WP_005964512.1|1390773_1391508_+|IclR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224332
NZ_CP040505.1|WP_005964499.1|1385983_1386961_-|hypothetical-protein	unknown	unknown	gnl|CDD|224513
NZ_CP040505.1|WP_005964493.1|1383345_1384377_-|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl|CDD|234629
NZ_CP040505.1|WP_040314182.1|1392544_1394050_-|glutamate--tRNA-ligase	unknown	unknown	gnl|CDD|234953
NZ_CP040505.1|WP_005964491.1|1382059_1383196_-|D-alanine--D-alanine-ligase	unknown	unknown	gnl|CDD|234993
NZ_CP040505.1|WP_040314369.1|1386957_1388283_-|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl|CDD|236486

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005964534.1|1395750_1396524_-|fumarylacetoacetate-hydrolase-family-protein	gnl|CDD|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	1.37568e-68
NZ_CP040505.1|WP_005964537.1|1398505_1401178_+|DUF3516-domain-containing-protein	gnl|CDD|378795	pfam12029, DUF3516, Domain of unknown function (DUF3516). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is typically between 460 to 473 amino acids in length. This domain is found associated with pfam00270, pfam00271.	0
NZ_CP040505.1|WP_005964497.1|1385176_1385956_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl|CDD|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	8.59532e-47
NZ_CP040505.1|WP_005964541.1|1401646_1402054_+|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl|CDD|350222	cd09874, PIN_MT3492-like, VapC-like PIN domain of the hypothetical protein MT3492 of Mycobacterium tuberculosis CDC1551 and other uncharacterized, annotated PilT protein domain proteins. Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis CDC1551, hypothetical protein MT3492, and similar bacterial and archaeal proteins are included in this subfamily. They are PIN domain homologs of the Mycobacterium tuberculosis VapC and Neisseria gonorrhoeae FitB toxins of the prokaryotic toxin/antitoxin operons, VapBC and FitAB, respectively, which are believed to be involved in growth inhibition by regulating translation. These toxins are nearly always co-expressed with an antitoxin, a cognate protein inhibitor, forming an inert protein complex. Disassociation of the protein complex activates the ribonuclease activity of the toxin by an, as yet undefined mechanism. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.06247e-16
NZ_CP040505.1|WP_005964484.1|1379017_1380052_-|hypothetical-protein	gnl|CDD|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	0.00477242
NZ_CP040505.1|WP_005964539.1|1401347_1401650_+|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl|CDD|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	2.20812e-06
NZ_CP040505.1|WP_131247399.1|1384671_1385076_+|hypothetical-protein	gnl|CDD|319774	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase. Heavy metal-transporting ATPases (Type IB ATPases) transport heavy metal ions (Cu(+), Cu(2+), Zn(2+), Cd(2+), Co(2+), etc.) across biological membranes. These ATPases include mammalian copper-transporting ATPases, ATP7A and ATP7B, Bacillus subtilis CadA which transports cadmium, zinc and cobalt out of the cell, Bacillus subtilis ZosA/PfeT which transports copper, and perhaps also zinc and ferrous iron, Archaeoglobus fulgidus CopA and CopB, Staphylococcus aureus plasmid pI258 CadA, a cadmium-efflux ATPase, and Escherichia coli ZntA which is selective for Pb(2+), Zn(2+), and Cd(2+). The characteristic N-terminal heavy metal associated (HMA) domain of this group is essential for the binding of metal ions. This family belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0.000794792
NZ_CP040505.1|WP_005964528.1|1394287_1395469_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl|CDD|224090	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism].	5.3551e-97
NZ_CP040505.1|WP_005964543.1|1402237_1403551_+|CapA-family-protein	gnl|CDD|378215	pfam09587, PGA_cap, Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.	9.78922e-74
NZ_CP040505.1|WP_005964536.1|1396893_1398351_-|alanine:cation-symporter-family-protein	gnl|CDD|376500	pfam01235, Na_Ala_symp, Sodium:alanine symporter family.	3.62263e-162
NZ_CP040505.1|WP_005964509.1|1389195_1390596_-|3-isopropylmalate-dehydratase-large-subunit	gnl|CDD|235490	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit.	0
NZ_CP040505.1|WP_005964487.1|1380655_1381009_-|metallopeptidase-family-protein	gnl|CDD|240572	cd12952, MMP_ACEL2062, Minimal MMP-like domain found in Acidothermus cellulolyticus hypothetical protein ACEL2062 and similar protein. The subfamily includes an uncharacterized protein from Acidothermus cellulolyticus (ACEL2062) and its homologs from bacteria. Although its biological role remains unclear, ACEL2062 contains a minimal metalloprotease (MMP)-like domain consisting of 3-stranded mixed 2-beta sheets and a HExxHxxGxxD/S (x could be any amino acid) motif. It may belong to a superfamily of bacterial zinc metallo-peptidases, which is characterized by a conserved HExxHxxGxxD motif.	2.15431e-43
NZ_CP040505.1|WP_005964512.1|1390773_1391508_+|IclR-family-transcriptional-regulator	gnl|CDD|224332	COG1414, IclR, Transcriptional regulator [Transcription].	1.1761e-44
NZ_CP040505.1|WP_005964499.1|1385983_1386961_-|hypothetical-protein	gnl|CDD|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	2.87073e-22
NZ_CP040505.1|WP_005964493.1|1383345_1384377_-|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase	gnl|CDD|234629	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.	9.19536e-146
NZ_CP040505.1|WP_040314182.1|1392544_1394050_-|glutamate--tRNA-ligase	gnl|CDD|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_CP040505.1|WP_005964491.1|1382059_1383196_-|D-alanine--D-alanine-ligase	gnl|CDD|234993	PRK01966, ddl, D-alanine--D-alanine ligase.	7.46977e-163
NZ_CP040505.1|WP_040314369.1|1386957_1388283_-|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl|CDD|236486	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated.	0

Protein sequences

>NZ_CP040505.1|WP_040314369.1|1386957_1388283_-|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MPSVLRVEGGYPLQGTITVRGAKNFVPKAMVAALLGDGLSQLSNVPLIRDVDVVSDLLRLHGVEVNFDQTSGVMTLDPRNVKIASRSDIDSLGGASRIPILFCGPLLHQLGEAFIPELGGCNIGGRPIDFHLDTLRRFGAVVEKRPDGVRIRKPAEGLRGALIELPFPSVGATEQTLLTAVRVEGITILKGAAVEPEIMDLINVLQKMGAIISVDTDRTIRIEGVSTLHGYRHNALPDRIEAASWGAAALATRGDIYVRGAHQPDMTTFLNTYRKVGGAFDIDSEGIRFYHPGGELNSIALETAVHPGFMTDWQQPLVVALTQARGLSIVHETVYENRFGFTKALRKMGANIQVYRECLGGTPCRFGQRNFFHSAVISGPTPLHAADITVPDLRGGFSHLIAALAAEGTSTVSGIDVISRGYEHFTTKLKQLDARVGYLDA
>NZ_CP040505.1|WP_005964499.1|1385983_1386961_-|hypothetical-protein
MSAIRHEDKPEERISSPVRQEGRSIHVLVSSMSAGGRSVAVGPNVVRALRAGGWSVRVSVTTASDDPVALAAASETSVVAGLGGDGFLSAIARGCHEAGLPFAPIPGGRGNDLCRALGIGHDPMQRARSLAELGFRSSQSDQELVSRLKPLDGMWVKSEDGRKILVLGLVSLGLDARANILANDSFLTSGPLAYGYGAFGALASYRPSRILAKVDGIEREFKGWITSVSNSGCFGGGIRLVPESDLHDGRIELCHVGALPLRQAVPVLAGVVVGRAEGHEVIEVERIKEVEILEPRGMTAMADGDRVADIPFTVIGAPHAVDVLV
>NZ_CP040505.1|WP_005964497.1|1385176_1385956_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MTSSITGFYRFAQAVLTPIMTPWVKIRATGTENIPEKGPYLLVFNHLSDVDPLCVCWYFMKRGVPVRFLAKKSMFGVPVFGKIIHGMGLIPVDREKNPSQALLPATRALNSGEVVCIWPEGTHTQEPDMWPMSFKTGAARLALDTGVPVIPVAQWGPQDIMDRFASMPNMRPGQKVSYTFMPPVKMDDLISEAGSKDHEAVEELTTRIRDAVTAGVEDLRGAKAPERIWKAYTKAGPWWEDEQKQKAKKAKKAAKRKKS
>NZ_CP040505.1|WP_131247399.1|1384671_1385076_+|hypothetical-protein
MAQVGEAPMVFHDLRLGDHESFYRVVVEFSGEGVPGYFQSWTDAPVEQGRGRPLPVAGDAFLDLAITGTAMPSSDELNAEYYAGERNLELGPLDVREDGTFEDTTHIVIGMDQARKFQIGFLDNPTRMVIDIQK
>NZ_CP040505.1|WP_005964493.1|1383345_1384377_-|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase
MSDERAFSRATVLGTGAWGTTFAQILADTGLEVSMWGRNADVVEFINSGENASYLPGIELSERISATSDIAQAVEGSQMIVVAVPVAAVRPTLESARDQLAEDAVFLSLAKGLELESLLRVDEIIAQASGADESRIAILSGPNLSREIAEHNPTATVIASTNLELASSLAKSCHTSYFRPYVSTDVIGSEIAGAAKNVIAVAIGAAEGMGFGVNTRATLITRGLAEITRLGTALGADPQTFAGLAGVGDLMATCSSRLSRNFSFGHRVGQGMSVEEAIALSPGVVEGARSAEPILALAKSLNVDVPIISAVVAVVRDGASIEQMGQMLLSRPQKMDGWRIELV
>NZ_CP040505.1|WP_005964491.1|1382059_1383196_-|D-alanine--D-alanine-ligase
MTQTSKRRVLIVFGGRSGEHEVSCATAAGILKAIDRTKWDVLPVGITHEGEWVLVEDKPSLLEFREGRGQSVQAGASRVVLAPGSGSLLEVTYEGDPASPESKVANVRDLGHVDVVFPLLHGPYGEDGTIQGLFEMANVHYVGCGVTSSAISMDKHLTKTVLAAAGIDVGTWELITPMDWEDDPEECARRVGELGYPVFVKPCRAGSSIGITRVDSPQGLATAIKEAQNSDPRVIVEAAISGREIECGVLGGTGMRPRTAPLGEIEVPEGEFYDYELKYIDTEAIGLVCPAKVAPEFEAQIRWTAAKAFEALECEGLARVDFFHDEEAGTVIINEVNTMPGFTPISMYPQMWKAAGMGYAALIDELLEQALERDLGLR
>NZ_CP040505.1|WP_040314179.1|1381027_1381945_-|glutathione-synthetase
MTTKPKVTLATSSAMPNLYHGEEGLLDALAERGCDPSIKIWNDPDVDWTDAGTVIVRSVSDYPLQRQAFLEWTKKVPRILNHPDILEWNTHKTYLRSLEKRGLPTIPTAWLEPEQNLSKHQIHTRFPASGEFIVKPAVSSGVRDIGRYTTLSTAQRQAAIAQVQQLLGAGRTVMLQRYLEEIDTHGEISLVFFNGLVSHAVEKRAVLHPATITEPTMHEAVVTAEAADHIAWQWGEQIRRVLHSYVRERIGRDEQFLFNRVDIVPDDEGSFRVMEVSLVDADLYLAATPEALDNFADAISVRAHW
>NZ_CP040505.1|WP_005964487.1|1380655_1381009_-|metallopeptidase-family-protein
MPVEMSAQAFEDLVADALEEIPDEFWDRLDNVAIFVEDEPPTDMEPDTLGVYDGVALTQRCDYAGVLPDRILVFRKPTLAMCETEEEVAKEVRITVIHEVGHYFGIDDEALHELGWA
>NZ_CP040505.1|WP_005964484.1|1379017_1380052_-|hypothetical-protein
MKFRRPFAVSAVTAATVVGGVFLSSATAFAADQPPLACTGLGFQCAGPNSFGSLSASYTTDQPGPDTVWSTPQVGLLDSPPDALDVDPSATVTRTYEITIPSQVSPTSPHRVSLLIENGNSLFAHPADMRFHITDASGNELPGGTCSPEEQKLHPGEQTTVTCTVPESGARLTAFRRGDFGGENLAAWTLGSQTQPAPAAPEAPSVEPVVTADGLAVTGKVDGEGTWRASVSVTRQAPDANGKEAVYTPEITVDDKPVAAPSFRITTKAPAPASNGSSSASTAPSDATPPAASDANPTKPVTKSAKNSGRLARTGAMSVGPLGAALLLTAVGTVALAFKRGRRV
>NZ_CP040505.1|WP_005964481.1|1378229_1378607_-|hypothetical-protein
MTPTSETPIPVGIALSEVQRASRNARRFWNLLYAVGTATAMALIVGILLATLGHSVQAIVTGVATLLGGAGSAFLVKMKNDAVEELERAKSTLLEHWKEAGTTRSTTRGVGEGMGDLVESLMSII
>NZ_CP040505.1|WP_005964509.1|1389195_1390596_-|3-isopropylmalate-dehydratase-large-subunit
MTGTMAEKVWRDHIVKQGEGGAPDLLYIDLHLVHEVTSPQAFEGLRLAGRKVRRPELTIATEDHNTPTLDIDLPIADETSRLQINTLRENAKEFGIRLHSLGDADQGIVHVVGPQLGLTQPGMTIVCGDSHTSTHGAFGALAFGIGTSQVEHVLATQTLPLAPFKTMAITVNGSLPQGSTAKDIILAVIAKIGTGGGQGYVLEYRGQAIRELSMEGRMTVCNMSIEAGARAGMVAPDETTFEYLKDRPHAPEGEEWERAVEYWKTLPSDEDAVFDAEVILEAVDIEPFVTWGTNPGQGVPLSSKVPDPKDFSDESQRLAAERALEYMDLKVGTAMRDIRIDTVFLGSCTNGRIEDLRAAAAIIKGRKKADSIRMLVVPGSARVRLQAEAEGLDRVFTEFGAEWRNAGCSMCLGMNPDTLSPGERSASTSNRNFEGRQGKGGRTHLVSPLVAAATAVRGTLSSPADL
>NZ_CP040505.1|WP_005964512.1|1390773_1391508_+|IclR-family-transcriptional-regulator
MEDSTTSGVGVLDKAALVLGALEAGPATLAQLVSATGLARPTAHRLAVALEYHRMVARDMQGRFVLGPRLQELASSAGEDRLLAASMPVLQALRDHTKESSQLFRRQGDYRVCVAASEREMGLRDSIPVGATLSMAAGSAAQVLLAWEEPDRLHRGLYGASFNATMLSQVRRRGWAQSVGEREPGVASVSAPVRGPSGRVLAALSISGPIERMGRQPGRQHGPSVVAAANRLSDFLRSVEDSDL
>NZ_CP040505.1|WP_040314182.1|1392544_1394050_-|glutamate--tRNA-ligase
MSETTASGAEVRVRFCPSPTGTPHVGMVRTCLFNWAYARHTGGTFVFRIEDTDAARDSQESFDQILDSLKWLGLDWDEGVDKGGAHAPYRQSERMDIYAQVAARLLEAGYAYESYSTPEEIEERHRAKGEDPKLGYDGFDRTLSEEQIAAFKAEGRKPVLRMRMPDEDITFTDLIRGEITFKAGSVPDYVIVRANGHPLYTLVNPVDDALMEITHVLRGEDLLSSTPRQIVLYRALEAIGVAKFMPRFGHLPYVMGEGNKKLSKRDPESNLLLHKEAGMIPEGLNNYLALLGWSIAPDRDIFTMSELAQAFDIEQVNPNPARFDYKKCVAINAEHIRRLDGEDFKRRLVPFLQRDGLVSAQSYEELGEDEKTILDQAAPLAQTRIQLLGEVGPLMRFLFTGAESIEYNEKALSKLKENAHEVLRAAREVLEGIEDFSAAASKPALDAKLVEEMGVKPRFAFGPLFVAMTGTNVSLPVVDSMAILGREEVLRRIDQLLVRLG
>NZ_CP040505.1|WP_005964528.1|1394287_1395469_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MIQTFTPEQLRRIGSLKWSGITSSTGAPTIGAWVAEMDFGTSPRLEEVMISAIRNGLLGYQPKWLAPRLAEATTVFQAQRFGWQIAPEQVRLVESVLSSLRSVITHFLQPQAPVIVPTPAYMPFLTIPKALGHPVIEVPSLHGEAAGQRGWMLDLEGIRAGLEAGAGLMILCNPWNPVGRVFSVEELTELHKLLAGYEVLVFSDEIHSPLVLADVPFVSYASLGADFAAHTVTATAASKGWNIAGLPSAQLIVPDERLRERWDRVGAELQFGASTIGTLATIAAYRETDPWQDEVRRYIDLNMEAVEQAIANSPIDFTRPEGGYLSWWGFEGLGLGDNPSAKIRELAGIAVNEGASLGADYSQWARFNFACSHEVTAEIIERMLNLIQGASLA
>NZ_CP040505.1|WP_005964534.1|1395750_1396524_-|fumarylacetoacetate-hydrolase-family-protein
MRIVRFSDGESPRYGALEEGSSRIVVLKGDPLFSEIEPDGRIVELEEVRLLSPVIPRSKVIGIGTNFGEEVRVPGSSEPETMPPIFMKTNTSVIGPDDPIVLPKWSQDVIYEGELAVVIKSLAKDVPLDEVDQVILGYTLCNDVTARDAMDGGPWLKGKSFDTACPLGPWIVVDPELDVQNLVISGSVGDAHTTGSTAYMLHTVRELVAYCSTLFTLLPGDVITTGCPGVSGPIEAGDTVSFEIPEIGRLTNPVIRR
>NZ_CP040505.1|WP_005964536.1|1396893_1398351_-|alanine:cation-symporter-family-protein
MEDLANQILVVADWLTLHVTVWLLVGTGLFLTITSRAVQLRHFPSMIRAVTGSRQGAKGGISSFQAFTISLAARVGVGNVFGVAAALLMGGPGAIFWMWIVALVGMATAFFEATLAQIFKVRAADGSFRGGPAYYISLGMKNKALATVFAIITVVTCAFVITSVQSNAIAGTVLSALGDAGDDPALWGLSQAQLIIAALLFVFSAMVIFGGIRTVARVTEWMAPIMATIYVIMVAIIVVMNIDQFGTVLAQIIRGAAAPAPIVGGLGGGIFAALINGTKRGLFSNEAGQGTAPNAAATATVSHPVTQGLIQSLGVFIDTIVVCTATAFVILIAGPEVWGAQGANPANLTSLAVAHELGAWTIMPMAILIFVLAYSSIIAAYVYSETNMTFVSNTKWAVWSVRVVSVFSVVLGALASLDLVWNTVDIAMAVMTVTNLVALLSLSKWGRGALRDYERQRREKVAEPVFSGVDNPLLPTDVPTDSWRG
>NZ_CP040505.1|WP_005964537.1|1398505_1401178_+|DUF3516-domain-containing-protein
MTAPLNDLLDELEDDGSLDDIDALYEAFTSWAESNGRPLYPHQDESLMQILDGKHVIAATPTGSGKSMIALAAHFVSMAQGGRSYYTAPLKALVSEKFFDLVALFGAKNVGMITGDFSLNVDAPIICCTAEILANQALHDGPSLDADMIVMDEFHFYGDPQRGWAWQLPLLELSEPQFIAMSATLGDTSTFEKAWKERTGREVGLVDDAKRPVPLEFEYVVDRLEDTVERLLKEGRWPVYIVHFAQKDAVTTAQSFDKRKLIDKEKREKIAAELRSVSFGRGFGQTLKSLLSQGIGVHHAGMLPRYRRLVERLAQQGLLPIVCGTDTLGVGINVPIRTVLITSLVKFDGKRMRHLSAREFHQIAGRAGRAGFDTIGFVRVLAPEHEVEAARERARLTAAQEAARDARDLKKAKKKAQKKRKGPADGTISWTKGTYERLLSESPERLRSQFAFTHSMVLNVLAGAQKAQRDPGEHLVFLARHNDDPPSEVNPHLRRLGEIYSSMRVAGVVEHVSTEQAVRDGRPRLRAAGDLPDEFALNQPLSPFALAAMDLLDPESPDFALDVVSVIESVLEDPRPLLFAQQSAAKGAAVAAMKAEGMEYEERMEALEEVSWPRPLEELLSGAFTSYVKANPWVGALELSPKSVVREMVENAMTFTELVSRYDLGRSEGVILRYLSDAYRAMRQIIPDSAMTQEVQAIIEWLHALIRAVDSSLLDEWEALAEGREMTPDSQTVGTELAFGANEDGSVAFSANLHALRTTVRKALFHHVELMSRDAVEALAREDSDSAWDEARWDDALARYWAEYDWIGIDQAARSASMCVINEEPNAADLAAAGDEEAAEHATPGRFWLATQTLADPKGDGDWRITALVDLDESDRRGGLALRLLDVGPR
>NZ_CP040505.1|WP_005964539.1|1401347_1401650_+|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MAAAPLSLEATISLRTLNQHSGRIVHAVVDSGRAVTITDRGRPVARLVPLDTDETPLERLVREGKVRVPTRQGHFVPTVHPLPEGVSLESLLAEDREELS
>NZ_CP040505.1|WP_005964541.1|1401646_1402054_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MIYLDTSFVGLIFLNQEHAQEANQILHDLGKDNFFASSRLLEVELIRLMRRNGLALDDVNEYLRELYLLPIDDAVVERACTLTGSLKSLDAIHLATALTIDSPRDPVTFLTHDARLLAEAKRLGLNTLPLTGDVC
>NZ_CP040505.1|WP_005964543.1|1402237_1403551_+|CapA-family-protein
MSQITPRPRLRLPRGSGLAFICALILSCVLMVIYALPLAPGGPIDALSQSDQSAASPQSSDSQTQDKPQPFKPRTLSVVMSGDLLWHSGLWDSAAQVAYETGRGPYDFSVLFGPIRSTIESADLAICHEEVPLAPEGVEPSGYPVFAAPQEVAAAIAETGWDLCTTSSNHSLDQGFGGIETTLRKFDEVGILHTGTFRSPEERSTPTIYTSQEGVRIGVVSGTYSTNGIPLPEGQEWSVAFLDVEDMISRAQAAREAGADIVLAAVHGGEEYVAEPNAQQLEVAEALTASDAIDLVYGHHVHVVQPWSIVNGKWVVYGLGNMVATPPFEYRRSHEGVTARFVFTQSPEGGFVVTRAQYIPTLIDSYWAGERPVLRPVLAALASGEGVTSDLEIARIVTHDTVFSLGVPEVPALGPEGDAPSFDAQGEPIPAAGLEEG

Crispr_ID: NZ_CP040505_31

• CRISPR_ID: NZ_CP040505_31
• CRISPR_location: 1813159-1813242
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP040505_31

Consensus_repeat	Method
CACCCCTCCCATCCTCATGTGGT	CRISPRCasFinder

spacers of NZ_CP040505_31

>31.1|1813182|38|NZ_CP040505|CRISPRCasFinder
CGCGCCCGGCATCAAGAGCGCCTTCGGGTCCGTCCAAT

CRISPR arrays and Neighbor proteins around NZ_CP040505_31

CRISPR arrays

The CRISPR arrays of NZ_CP040505_31

>merge|NZ_CP040505|31|1813159-1813242|CRISPRCasFinder
CACCCCTCCCATCCTCATGTGGTCGCGCCCGGCATCAAGAGCGCCTTCGGGTCCGTCCAATCACCCCTCCCATCCTCATGTGTT

>NZ_CP040505|31|28|1813159-1813242|CRISPRCasFinder
CACCCCTCCCATCCTCATGTGGT	CGCGCCCGGCATCAAGAGCGCCTTCGGGTCCGTCCAAT
CACCCCTCCCATCCTCATGTGTT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005963348.1|1807160_1808369_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|223650
NZ_CP040505.1|WP_131247314.1|1804366_1805812_-|FTR1-family-iron-permease	unknown	unknown	gnl|CDD|223744
NZ_CP040505.1|WP_138588776.1|1818789_1819983_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005963318.1|1829371_1830196_+|DUF4037-domain-containing-protein	unknown	unknown	gnl|CDD|379078
NZ_CP040505.1|WP_005963345.1|1809596_1810454_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_040313618.1|1824142_1825747_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005963356.1|1802186_1803449_-|DUF2318-domain-containing-protein	unknown	unknown	gnl|CDD|378381
NZ_CP040505.1|WP_005963326.1|1822439_1824149_-|ATP-binding-protein	unknown	unknown	gnl|CDD|226951
NZ_CP040505.1|WP_005963322.1|1825743_1826553_-|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|225107
NZ_CP040505.1|WP_005963320.1|1826659_1829131_-|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl|CDD|214361
NZ_CP040505.1|WP_005963330.1|1819996_1820851_+|TPM-domain-containing-protein	unknown	unknown	gnl|CDD|377378
NZ_CP040505.1|WP_005963342.1|1811278_1812937_+|L-lactate-permease	unknown	unknown	gnl|CDD|224535
NZ_CP040505.1|WP_083879464.1|1830517_1831792_+|PASTA-domain-containing-protein	unknown	unknown	gnl|CDD|275384
NZ_CP040505.1|WP_005963354.1|1803698_1804325_-|hypothetical-protein	unknown	unknown	gnl|CDD|378461
NZ_CP040505.1|WP_005963358.1|1800868_1802128_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|223650
NZ_CP040505.1|WP_005963344.1|1810495_1811002_-|DUF4418-family-protein	unknown	unknown	gnl|CDD|379592
NZ_CP040505.1|WP_005963340.1|1813524_1816233_-|pyruvate,-phosphate-dikinase	unknown	unknown	gnl|CDD|236446
NZ_CP040505.1|WP_005963346.1|1808406_1809600_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|226957
NZ_CP040505.1|WP_005963328.1|1820941_1822141_+|DUF4428-domain-containing-protein	unknown	unknown	gnl|CDD|373083
NZ_CP040505.1|WP_005963350.1|1806466_1807159_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|213222

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005963348.1|1807160_1808369_-|ABC-transporter-permease	gnl|CDD|223650	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	4.91891e-13
NZ_CP040505.1|WP_131247314.1|1804366_1805812_-|FTR1-family-iron-permease	gnl|CDD|223744	COG0672, FTR1, High-affinity Fe2+/Pb2+ permease [Inorganic ion transport and metabolism].	1.59022e-48
NZ_CP040505.1|WP_005963318.1|1829371_1830196_+|DUF4037-domain-containing-protein	gnl|CDD|379078	pfam13228, DUF4037, Domain of unknown function (DUF4037). This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is approximately 100 amino acids in length. There is a single completely conserved residue P that may be functionally important.	1.81189e-05
NZ_CP040505.1|WP_005963322.1|1825743_1826553_-|response-regulator-transcription-factor	gnl|CDD|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	5.61853e-39
NZ_CP040505.1|WP_005963356.1|1802186_1803449_-|DUF2318-domain-containing-protein	gnl|CDD|378381	pfam10080, DUF2318, Predicted membrane protein (DUF2318). Members of this family of hypothetical bacterial proteins have no known function.	2.87729e-42
NZ_CP040505.1|WP_005963326.1|1822439_1824149_-|ATP-binding-protein	gnl|CDD|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	5.76726e-09
NZ_CP040505.1|WP_005963320.1|1826659_1829131_-|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl|CDD|214361	CHL00095, clpC, Clp protease ATP binding subunit.	0
NZ_CP040505.1|WP_005963358.1|1800868_1802128_-|ABC-transporter-permease	gnl|CDD|223650	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	2.47769e-28
NZ_CP040505.1|WP_005963342.1|1811278_1812937_+|L-lactate-permease	gnl|CDD|224535	COG1620, LldP, L-lactate permease [Energy production and conversion].	1.29055e-99
NZ_CP040505.1|WP_083879464.1|1830517_1831792_+|PASTA-domain-containing-protein	gnl|CDD|275384	sd00037, PASTA, PASTA domain. PASTA domain is found at the C-termini of several penicillin-binding proteins (PBPs) and bacterial serine/threonine kinases. It is a small globular domain consisting of 3 beta-sheets and an alpha-helix. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain.	1.40036e-14
NZ_CP040505.1|WP_005963354.1|1803698_1804325_-|hypothetical-protein	gnl|CDD|378461	pfam10634, Iron_transport, Fe2+ transport protein. This is a bacterial family of periplasmic proteins that are thought to function in high-affinity Fe2+ transport.	3.97673e-67
NZ_CP040505.1|WP_005963330.1|1819996_1820851_+|TPM-domain-containing-protein	gnl|CDD|377378	pfam04536, TPM_phosphatase, TPM domain. This family was first named TPM domain after its founding proteins: TLP18.3, Psb32 and MOLO-1. In Arabidopsis, this domain is called the thylakoid acid phosphatase -TAP - domain and has a Rossmann-like fold. In plants, the family resides in the thylakoid lumen attached to the outer membrane of the chloroplast/plastid. It is active in the photosystem II.	4.13478e-23
NZ_CP040505.1|WP_005963344.1|1810495_1811002_-|DUF4418-family-protein	gnl|CDD|379592	pfam14387, DUF4418, Domain of unknown function (DUF4418). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 132 and 150 amino acids in length.	1.55029e-14
NZ_CP040505.1|WP_005963340.1|1813524_1816233_-|pyruvate,-phosphate-dikinase	gnl|CDD|236446	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional.	0
NZ_CP040505.1|WP_005963346.1|1808406_1809600_-|ABC-transporter-permease	gnl|CDD|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	6.37162e-08
NZ_CP040505.1|WP_005963328.1|1820941_1822141_+|DUF4428-domain-containing-protein	gnl|CDD|373083	pfam14471, DUF4428, Domain of unknown function (DUF4428). This putative zinc finger domain is found in uncharacterized bacterial proteins.	1.2417e-17
NZ_CP040505.1|WP_005963350.1|1806466_1807159_-|ABC-transporter-ATP-binding-protein	gnl|CDD|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	6.91419e-78

Protein sequences

>NZ_CP040505.1|WP_005963342.1|1811278_1812937_+|L-lactate-permease
MLTTAFTPSTTAIAGSLPLTAIAALLPLAVFFIMLGVFKIATHWCAIGSLAIAIVIAAFGFHMPLGLAALSAAQGAAFGLLVICYIVVAAVWLYNLSEVSGRGDDVRAVFSAVGKGDIRIQALLIATAFCALMEGLAGFGAPVAITCAMLLALGLKPLKAALVTMVANSLHVAFGAMAIPMITTAKLGGSEATLLTQTGSRITPLFLIWLPFVLLAMLDGKRGVKQLWPVALTAGIGMAVGHFVTAHFISYELTAVVGALLAFVLIAGLLSFWSPTTPEEERSAVVTEKLGAGRITLALLPYWFVVIVFAVAKLWKFGVDVPAALKTTDLKIPWPGLDGNLLTASGEVSKETILSISTLASPGTMLVFASLVVTIVYSLSDSNGRFPFSISKGIATLGSTVMGLKMAILTISAVMALAYAMNFSGQTVAIGTALAGTGAAFAFFAPILGWIGTAVTGSATSAGALFASLHSTVAAQTGLSPQLLLAVNEIGGGIGKIISPQNLAIAATAVKEEGLEPELLRKAAPYSVGLLLLLSIITVLASMGILGFLIAS
>NZ_CP040505.1|WP_005963344.1|1810495_1811002_-|DUF4418-family-protein
MSKTKLAVPLAPALLSLALSVGAATVFSACARREDGTWMNCHQCQNTVVAGGIGLVALFGASAAIKNKPTRIALQALAVIASLFVFFIPGGICPMCMMKTMRCYTVFQPFTRVMTVLIAATGIGALVDSLKMKKTGAPQAEAAQVDTVEAGTASTDTNARDTKKEIRA
>NZ_CP040505.1|WP_005963345.1|1809596_1810454_-|hypothetical-protein
MRKTRRALAATIVLALIVVGAFLIWREHRMAVSYQEALRLEQSGEDERAYEAFAALGGYAEAEEHLRAMLNANPALPYRVATKGSLVDFGSYEQDGKDSNGPEPIRWIVLDKLDGRLLLLSLDSLEARPYHPVPFEPITWQDSDLRQWMNMEFLNTAFTDLERSLIPAVEVPNAAQTKTGTTGGPATKDRVFALSETEAAIYIADPLEHELVGKALLSAKAADDALPLDEDGHADWWLRSPGTYDFTAQFIDRKGAAHVSGANVDVIYGVRPALWLDTNPAGEEQ
>NZ_CP040505.1|WP_005963346.1|1808406_1809600_-|ABC-transporter-permease
MNRGPLSLRAIPFKSLRAHPLRSTILLVLVLAQALSAMMGLLLVQSVKGELELARDRLGADILVYPSAGFRSLDKSCVQMLGTPVLYHKERASLARLKDNEEIERIAYQLYLSDASGEGEARWIVGFDPASDFVVAPWLDKGPRHLIPSDAVAVGADVPVTQAGTTFVFNKEWRVDSRLERSGSEYDNAVFVPFTSLQQVIDDASAMGINTYSSMDPKRDYSVALLRISDGKRVESVTNWINLYVRRVEALHSDVGLVSTSSSLTKQSGAIGVVTAVTWLLLLGALGVAQSLMMNERRREMSVWRIIGASNRVIARLFMRETLLIHLIGALGGVALAACFVVFGSLSFLHREFLDASSILASAGLAGAITVFTGWASARWSQSKVMRADNDSMLLMR
>NZ_CP040505.1|WP_005963348.1|1807160_1808369_-|ABC-transporter-permease
MLSLMKLPGRNLRAYGARSAFLFAFAVLMAVATFGGSVLIHGIHRGLDTVEARLGADIVVTPSDAANEFNPQSFLIEAEPGYFYMDKSTVQKVGAIDGVKAVSGQIFLASARSSCCSGRYQVVAFDPSTDFVVQPWIADSVGGADIGLMDVVVGANVAVPPEGSFRIYGENLRVVGQFDPTGSTLDNAVYANFDTAKVLLQASVDKELNKYPDLDPDAVVSSVMVAVEPGADIEAVAEQIRAQVEGVNVATAKNMVKGIATALDRVSSTISIFIGLVWLLGAGMTVLVFTMMLHERAQEFALLKALGASRSQLGRLVVHEALLIDLVGGLAGIVLAGGVLAAFRTLVTQLIGIGFILPSPPQMGLLAVESLAAVLLAAVLASWVSMMRVNRMDAALVLKEGE
>NZ_CP040505.1|WP_005963350.1|1806466_1807159_-|ABC-transporter-ATP-binding-protein
MTISAQGLTKEFTRRAAGAVFTAVEPVDLQVECGELVLLKGRSGSGKSTLVSMLAGVLAPTAGRVLLDGEDLYSLSEVELSSLRNEKIGLVPQGHAALRSLSVVENVILPAVLSTKGAVGPERGLELLEAVGMSALADASPSELSGGELRRMGVARALMMDPKVVLADEPTAGLDEENAVMVLEMLRRAADEGRAVVVATHEEEATRFADRVLHMVKGCLREDGGRQEKD
>NZ_CP040505.1|WP_131247314.1|1804366_1805812_-|FTR1-family-iron-permease
MSQILDDAQTAYLAGDIEAGKDLVNTAYYRRYETLGFEKQVMARISGERVSTVEMEFSLVKRAMNEHDDAGVAQHTSALKNYLREDAATLDGKGSSDGASDDYSPGPWGQVAKEMAQILDDAQAAYLAGDIEAGKDLVNTAYYRRYETLGFEKQVMARISGERVSTVEMEFSLVKRTMNEHDDAGVAQHTSALKNYLREDANSLDGYTSASSATSPWLSGFLPSLLVILREGMEAILVVAAILAYLTKAGHKDKAKVVWIGVVLALVASVLLAFLFSAFANLAGANQELLEGLAALFAVAMLIWVSNWMVSKSSNEAWDRYIKDQTDASLTRGSLLGLTFIAFLAVLREGAETILFYVPIISNAQDSLTHVWIGLGVGVLILLVVYLLIQFAALRIPLRPFFTVTSILLALMAVTFTGSGIKELQEADVLPLTYLQGFPTIDLLGIYPRVENLSGQALVLVVIVGLYLWGRKRRSGALAAK
>NZ_CP040505.1|WP_005963354.1|1803698_1804325_-|hypothetical-protein
MKRSLTRIGAAVAALALMTGLAACSSSDSSKPAPSVTESTSEEGTAPGEDAGFDEFPLGDDVFSGPLKISGVYFQPVDMEPQIQTPAKDASMHIEADISALEGNDLGYGVGDFIPGLTVEYKILGADGKAVLEGTFMPMNASDGPHYGLNLPKLDAGTYTVQFIVHSPEENGWLLHTDETTGVKGRFWTEPITAEFKDWKWDPSAVEW
>NZ_CP040505.1|WP_005963356.1|1802186_1803449_-|DUF2318-domain-containing-protein
MIVQMGTVTLILLLTALAIGAVLPFIPSRGRGRSGRNASTRVILIGLGTGIISSFILTLVNTLFPKAVNRQSIALWTLPLAIGLAIGVMVLRGLMSRKEHPSASLESALRLIIGAYLALAVFRSAPQAMAQAVMIFPAGSELFSTQMVLIFVGYVLGWVVAALLGALAFKLLSLSRRRWVMNWILVVLALTHLMLIVRILQAQRVISMSNEAFEVLSWLINHEAVFSIVAMSALLVLAFLVWNEGRLMPLEGANPAQERLKKARARLWKLIAGAAAGGYLAGALLITLGVLIGSAEVELSEPESYSVHNESAVINVADISDGHLHRFAYTTSSGVEVRFIVIQKAGSSFGVGLDACEICGASGYYEKDGKIICKLCEVAMNIATIGFKGGCNPIPIEYEVSNGTLSVPLSVLEANADIFA
>NZ_CP040505.1|WP_005963358.1|1800868_1802128_-|ABC-transporter-permease
MLKGALLRRGNRHLLIAVTIALGTAVATSMLSVMFDVGDKVNQELKSYGANIVVRPRGAAVLNDLYGAESPEQAHLREDELGNIKTIFWTYNILDFAPLLPVEVTDSTGTQLTLTGTWFAHHLDLATGESLDTGLDKLRGWWTIEGEWATDAEPTGVMLGADYAARNSLKPGDTLTLSRGGSSVELRVKGIYESGDEADSGIYAPLETAQTLLGQSGVVGSVEVSALTTPDNDLARKAAKNPQSLSVSERETWYCTAYVSSIAYQIEEVMTDSVARPVRQVAESEGTILAKTQLLMVLVTILSLIASALAIANLVTANVMERSAEIGLMKAVGAKNRSIIALFLTEITIVGLLGGGLGYAAGLGLAQIIGHMVFASPIAFAPVALALVILLVLLVVLGASIPAIRYLLRLNAAEVLHGR
>NZ_CP040505.1|WP_005963340.1|1813524_1816233_-|pyruvate,-phosphate-dikinase
MVKYVYDFSEGDKSMKDLLGGKGANLAEMTKLGLPVPPGFTITTEACRAYLKDSLVPESLATEVTAALRGVEDQMERTLGDPDNPLLVSVRSGAKFSMPGMMETVLNIGLNDQSVLGLAKISGNERFAWDSYRRLIQMFGKTVLDIDGDLFSDALDSLKAERGVTGDTELTAEDLKGLVVTFKKIVSEQKGMDFPQDPRAQMDMAIEAVFRSWNTERARIYRRRERIPHDLGTAVNICTMVFGNMGEGSGTGVCFTRDPSSGHSGVYGDYLENAQGEDVVAGIRNTLSLADLEDIDKASYDKLRGIMRKLETHYRDMCDIEFTIERGKLWMLQTRVGKRTAAAAFRIAIQLVEEKLITRDEALARVTGDQLTQLMFPQFDQKASKEFVARGMAASPGAAVGKIAFDNAQAEAFSAKGVKCVLVRRETNPDDLPGMVVAEGVLTARGGKTSHAAVVARGMGKTCVCGAEALEINAEARTVTIDGRVFTSDDTIAIDGQTGEIFSGDVPVTDSPVTTYLAEGLEAGLAAAGADEGTRELVKAVDFILTHADKVRRLRVRANADTPADSRRSIEFGAEGIGLCRTEHMFLGSRRPLVERAILSAPGSDERTAAFAELEKLQRQDFLEMLEVMDGKSMTVRLIDPPLHEFMPALSELEIKVAVAKATGEVDPADERMLMEVRRFHEQNPMLGLRGVRLGIYLPGLFALQMRALCEAAADLVAKGLDPKPEIMVPLVGSVRELQLIREEGEAIIAEVQEARGVNLSGVTIGAMIELPRAAMTAEDLAEEADFFSFGTNDLTQTVWGFSRDDVEGVFFPQYLEAGIFGVSPFESIDVHGVGTLVREGVTRARSTKPGIKLGVCGEHGGDPASIHFFHEVGVDYVSCSPFRVPVARLEAGRAAVLTEES
>NZ_CP040505.1|WP_138588776.1|1818789_1819983_+|hypothetical-protein
MSEIQYKCPSCSAPIEYSPTKAKMACEYCGSTFEVAEVEQFNAQLLSPAPGAGPSPVPGVSVPGAAAGTPDASGPATPLPGSAQAGEQWKSSSPTYIDESEIASMTTFVCNSCGAEIVADPTTISTRCGFCNNTFVASSRIRETRIPDFIIPFALDKKGMLAAFERATTGKFLLPKEFRDTHTLSEATGAYIPYWYHDGTASGTITYRATNTRSWSDSEYDYTETDVYEVSRSASATFRGIPVCATTKLEPTRAEGAEPFNLVDSKSFATPYLSGYAASSYDIDAKATIDRADDRAKKTLSELIRGTVTGYSSVQQKSEQLFVQRDAVWYALLPVWLIVIGYEGKQYPFAINGQTGEVVGSFPISQKKLRALHIGFFTPFLALFAVIGWYLMYLLAN
>NZ_CP040505.1|WP_005963330.1|1819996_1820851_+|TPM-domain-containing-protein
MHRTSQHPYSQTMLTRGLRLGAFFALVLMAAIMLAPMATASTRHVVDDVNYISPELEQSLETEISRISTRYGQDIVLLYANLESGKSPMEMADDYFDYNGYGLGPDRSGVLLLVSPSTRDWWVSTRGDSIQTFTDQGIEALGTVLKRDLSEDNWEGAAKSFVEQTERYMKAAEEGHPITSPPKTLKDWLLHSAGALVVGVGGGVLASRAAVKALFVSKMTNEGLEPTAHSYVSDRGFAVTGGDDVFITTNVSRTKRPEPSSSGGSSSTHTSSSGATHGGGGGKF
>NZ_CP040505.1|WP_005963328.1|1820941_1822141_+|DUF4428-domain-containing-protein
MGLFSTKTCELCGDKAGMLTKLKLSEGYLCGSCKKKVSGFSSGWSSKTVEDVKTHLGAREANKAVFATFSPDRVVGVDSLLQVDTRQGLFVFGFGRDWSEGNPTVFPVSSLVSVRIVPAFDVFSDDADEDGIPDRFDSTPGTETVSGLGAGVGAASGTGVTMGNAVFDATALQNLVASTGMAGVVEIGSSARDENGFPREVRSFELAFTLSDPFVHEVRWHSNSVEGRMPAAIETFNRCVEVVTLVQQLKGMPVMGQMPGVMPAQMPGAYPPQGGYPAQSGFPVQGGYAAQPAFPAQPGYPAQPGYPAQPGYPQCAPGQGFPAPQPGAYPAQGAYPAQGGYPAQPGAYPAQGGYPAQPGYPQGAPAQGQYPQGSPDQTGFPMNGQPGQFPQQTPPNQQF
>NZ_CP040505.1|WP_005963326.1|1822439_1824149_-|ATP-binding-protein
MLSLTAIGHSWWMLLELVTLACALMSMFSVLATGLREKGLALVTPLVLLLVECSLTLTIAWGHGAVIRGSGDAGAQYMRLLGLSAVIPLLLDLGVVVWTRKRRARGSVGAGAKKACGREFVPPHGRVETGVKEKRGRGLGPWETSRRGSGSIGAGRETKDLPRQLRRILTPAVVAANPRGIREKIGVDTLLFLGALATIGWGEDLASGTPLPGQETLVRTLILGGTAVLAALSILLFASSIISLKETSELTFKRAFEEFPGLLALGGVKGPVAMTNAPMHHLLIALGLNTAQPLNQIWQALCVRAEEDELNAIMHRSLEGTPQHLFIRMGESVWQLRYKENDDAPESMRLQLWGEDLSEDYALARQLVDENAELEEATRGLRESIEEAGALVAQQDIVGTRLRLHDVLAQRLTFVRHFLAEGVGEVQRTRALSQMLTSLGEDLRADTSTPTAARLGMIVSGCALMGTRCEVSGPFPEDEDVASVLMSVLSQAVVNAVLHAEAEHITVRFSQSQSAWTMTIANPITDAVDVVEKTGLAGMRTRVEALGGWMRVHADTSFVVRVCIPRPLP
>NZ_CP040505.1|WP_040313618.1|1824142_1825747_-|hypothetical-protein
MNTRHWGMLALVIALSFAIPILVMFTPGEFAENTTADEPGTWARTLLLAHTLLALIIVTWTMSAYWRITDPRPRSLLITQGIVLLDWTILDMLRLDASAQLELALRLASYVPILMTPIVMLALVCAVQETNPLKRPRWERGATGVGSLLRFGSLTPALTAPSLGALVRAALVLGAVALGAIAQGAAVQGPFVSWAASTCVSCEMTLFALILVLAAAEASIRSGKIPTARNYRTAFTHSCLPAQILDENRRVLASTQGDNTRRHHNTRPKNLAHMRACEHEIPSGTLLWYIDHCEIAQLQARLDRTRTRLIRSHDTLARQHANPEVRKELARRTSILNAFDAIADPMIDRVRVLGEELPQATATRRARILRMISVDLAYIKYVGPLLLGTVQAEDTRHGSRLPDVEKALTRMCENLSADTHLCALVPLGRWDSGWVRSEVALAGMDFAHRVLWCCAERDGAEILIRVGIDEGGLDFLVMLETEGPMPLECLEDITGVFPSAAITIEDDRVRIRLRVGEDDEANIGAARLAQEDGC
>NZ_CP040505.1|WP_005963322.1|1825743_1826553_-|response-regulator-transcription-factor
MDPEPSQARSVLIVEDQMLLLDSLVRTINAHESLRVVGGLTSALDAVEACLRLRPDLLLMDVCTDGGASGLAACREVTTAVPATRVVLMTAMPDFSFPEQARAAGAASFIYKDVSSTELTAVLLSTAEGYSTYPARSTTPFLGYNELSDREIAVLRETCAGRTRAEIAEKFGLSENTIKSNISSILTKTGFRSITRLALYAISSGFIVVDGADTTDEDGATCEGGVRASGGVRSSGGARYTGGARSADGVMSSGGVRCEDEAQGEGTAP
>NZ_CP040505.1|WP_005963320.1|1826659_1829131_-|ATP-dependent-Clp-protease-ATP-binding-subunit
MFERFTDRARRVVVLAQDEARGLKHNYIGTEHLLLGLITEGEGVAAKALEMTEVKGDAVRTCVIEIIGEGEKAVEGHIPFTPRAKRVFELSLREALQLGHNYIGTEHLLLGLLKEGEGVAAQVLTKLGADLSQVRETVIQLLSGYQRGEGEGRESVGAGVGGTGGPERQNSAILEQFGRNLTQAARENKLDPVIGRRTEMERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVNGDVPETIKDRQIYSLDMGSLVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDEIHTLVGAGAAEGSIDAAQMLKPMLARGELQTIGATTNDEYRKYIEKDAALERRFQPVKVDEPSVEETVEILKGLRDRYEAHHRVIITDQAITAAAELADRYISDRFLPDKAIDLVDEAGARLRIRRMTAPPELRELDEKIAEVRRNKESAIDDQDFEKAAALRDEETKLGETRKAKEAAWKGTESDEIAEVGEEEIAEVLAMSTGIPVFKLTQTETTKLLNMEAELHKRVIGQDEAVKALSQSIRRTRSGLKDPNRPGGSFIFAGPTGVGKTELAKALAEFLFGDEDALIQLDMSEFSEKHTASRLFGAPPGYVGYDEGGQLTEKVRRKPFSVVLFDEVEKAHPDIFNSLLQILEEGRLTDSQGRKVDFKNTVIIMTTNLGTRDINKGVLTGFQSADNLTHDYARMKSKVNEELKQHFRPEFLNRVDDTIVFPPLGKDEIKQIVDLMIARLAKRMEAQDMRLQLSDEARELLADLGFDPVLGARPLRRAIQREIEDALSERILFGEIQPGQLVLVGVEGEGKERKFTFSAQQ
>NZ_CP040505.1|WP_005963318.1|1829371_1830196_+|DUF4037-domain-containing-protein
MTDAADCAYSVRMDFTDADTALADALMRVPGIRAVAIGGSRASGMADAASDTDMYAFFEGAPPQREERARLLADIADSGFIASSDAFGPEDHLSIGHRDVEVVYLDLSELRHQIDIASTTGLMSDGFTTCFLYTVATCVTVDDDGSLRDLKERVSTYPAATRRRILIESPELLATFLSQMTMAYQRGDYEMVAHRRASIQATYFNMIFALNHRYHPGEKRLLEHAGRLEALPRDFTRRWRELQLASVDAPEITTRTAGLVDELLALVHTMEDKV
>NZ_CP040505.1|WP_083879464.1|1830517_1831792_+|PASTA-domain-containing-protein
MDDANFALSERRSCNLIVPFDTLFTGLTMSHPGTSTDVPEPSSQSLSAHRAESTAEPLQIDTSHTIRASRIANPDPAGNNTPNAPETTLGKAQRASGMPSVPRGRLLAASGILVLLLGVFGAGGVAGWLVHDRIQADRAQSMPPVIEIPMISDSISKVVPDVRGLSLNEATQALADLNITPDTITTEEVPWAGTPGLVVAQDPVVGSAFDGSLHLSISAAATVPDLLGKTQSDAMDSLLALGVQPQIERRFDPSAKTGTVIALSQEPGAPLADDLTITVADVGSSILLSTLKNANSSGDCSNTKGSVNGTSYDNALACASGRNSEERVTAWILGRHGSRFTAVLGVLDTDPADSRVSVRVLADGVEVQKAEATYGAPTTIDVDVSSTLRLEVAVASPTNTRAVLANALIKGTTDQIDLLEASNR

Crispr_ID: NZ_CP040505_32

• CRISPR_ID: NZ_CP040505_32
• CRISPR_location: 1887100-1891032
• CRISPR_type: TypeI-E
• Repeat_type: I-E
• Spacer_info: 64 spacers
• Cas_protein_info: cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

Consensus repeat of NZ_CP040505_32

Consensus_repeat	Method
GGCTCATCCCCGCTCACGCGGGGAGCAC	CRISPRCasFinder
GGCTCATCCCCGCTCACGCGGGGAGCAC	CRT
GGCTCATCCCCGCTCACGCGGGGAGCAC	PILER-CR

spacers of NZ_CP040505_32

>32.1|1887128|33|NZ_CP040505|CRISPRCasFinder,CRT
CTGTTCCTGAACATCCCGGACACCCAGCAGGCC
>32.2|1887189|33|NZ_CP040505|CRISPRCasFinder,CRT
CACCCAGCGCTATGCCGAACCTCCACACAACGC
>32.3|1887250|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
GGCTATCAGGATGCGCGCCGAGCCCTGTATGCG
>32.4|1887311|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
ATCCAAAGCATCTTCACCGTCATCCAAGGCATC
>32.5|1887372|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
GGCATGCTCGCCACCGTCCTCGTGTTCGTCCGG
>32.6|1887433|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
TCCATGTATCGGGGATCGCGCGCGCATCGGGTG
>32.7|1887494|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
ACCCCATTGGCGTTGCAGAGCAGATCCGCAGAC
>32.8|1887555|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
AGTGTCAAGGTTTAGGCATTCTCATGTCCCACT
>32.9|1887616|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
TGCCACCATAATTCAACCCCACTTTGCCAACTC
>32.10|1887677|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
GAGCAGGGGAGGGGTGAGGGGCTGTGAGGGGCC
>32.11|1887738|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
ATCTCCGCTTGCGGTGAGATCGTCACCGAAATC
>32.12|1887799|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
ACCCGCACGAGGTGGAGCGTGCTGCCCCCTGTG
>32.13|1887860|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
TTCATGATCGCCTGAACGATCTGTGCCTCAGCT
>32.14|1887921|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
GCGATCGCCACAGCCGTCGGCGTCATCATGGCC
>32.15|1887982|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
GTCCACACGGAGAAACGCCAGTCCGAAATGACC
>32.16|1888043|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
CGCCTCCATGCCTTTGTTTTTGAGGATCTGCCA
>32.17|1888104|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
GCCATTGATTACGCGGCGAAGTATTTCCGTGTC
>32.18|1888165|34|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
CCTCAGGATTCGTGGCCGCAGGCGCTGAGGAGGA
>32.19|1888227|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
GCCCCTACCGGCGCCCGGTTCGACCGAGACCGG
>32.20|1888288|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
CGTTTCACGCCAGAAACTCTTGTCCCACGCTCC
>32.21|1888349|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
TTCTTGGATCGCTTGGACCGCTCCTGCAAAAAC
>32.22|1888410|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
GATCTCAGTTTTCCCGAAGCGCATCGGCTCGGA
>32.23|1888471|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
TGCGTCGCTGAATCCGCTTCGGCATAGTCGTTC
>32.24|1888532|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
CGACGCGGTCTTCGAGGGGAATTGGATCGGATC
>32.25|1888593|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
GGCGGTTTCCTCACGGATGTCACGAAACAGGCG
>32.26|1888654|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
TGTCACCGAGTTCACGAAGCGACTACGCTTACG
>32.27|1888715|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
GTGATGTTGTCAAGAATGACTTTGAGGCCAACC
>32.28|1888776|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
CCCGTACCCAAACGCACATGAGGCGGCGCATGA
>32.29|1888837|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
GACTATTGCGCCGTCAGACAATTTCCTACGGGG
>32.30|1888898|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
AGTGCGCCGGTGATCTTGTCGGCGCCGATCGCA
>32.31|1888959|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
GGCGGTTTCCTCACGGATGTCACGAAACAGGCG
>32.32|1889020|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
GCGCCGTCATCGACGAGGCCCGCAAACTCGCTG
>32.33|1889081|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
TTTCGCATGGCCGCCAGCTCAGCCTGCGTGACC
>32.34|1889142|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
CCCAGACTTTGGACGACTCGAGAAACTGCGGAG
>32.35|1889203|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
CAACATCGATTACACTCATCGCGCGTCCTCCAC
>32.36|1889264|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
CTGCGTTGCAATCCGCTCCTGCTCCGATCCGAC
>32.37|1889325|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
CTGCAACGGCGCAATATGACGCTCGTCTGCCTG
>32.38|1889386|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
GTAACGGAACGCGCCGGGGTTCTTCGGGTCGAG
>32.39|1889447|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
TAACCCAGCTCGTCGCCTCTATCACCCATCGCA
>32.40|1889508|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
GTCAAGGTCTCCGTCGTCGCGAACACGAAGCAA
>32.41|1889569|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
GACGCGGCGCTCAGTGTATGCCTCGCTGAGGAG
>32.42|1889630|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
AACCCCGACAACTACGCGGTCGGCGATGCTCTC
>32.43|1889691|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
TGCCTTCTTGAGGCCAGCGATTCTCGCGAGCGT
>32.44|1889752|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
TAAGCCCAGCGTCTGACCTGGGGGGTGAGCCAG
>32.45|1889813|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
ATCAAGAAGCCCAGGCCGCCGCCACGCTCGCGC
>32.46|1889874|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
ACGACGGCGACGCCGGTGATGGGGTACCAGATG
>32.47|1889935|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
GTCACAGCAGACACGCGCAAAGCCAAGCGAGCC
>32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
GCCCTGTCCGCCGTCCTCGCCGCCAACCCGATC
>32.49|1890057|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
CTGGATCGCGTCTGCTCGGGCGTCTTTCCTTGC
>32.50|1890118|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
CTAGGCGTTTCGCCCGCCGTCCTCATTGACGGC
>32.51|1890179|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
GGTTGGGAGTCGCACAGCCTGTGGCCTGCGACG
>32.52|1890240|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
GGAGCCGGGGCGGGCTTCTCCTCCGTCTTCTTC
>32.53|1890301|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
TCCCGAAGGGCCAGGATGTTGCAGTAAATCCGG
>32.54|1890362|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
CACGCGTACAACGAAAGCGGCTGCACGCCACCC
>32.55|1890423|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
AGAGAGTGGTTGCTGGGCGCCGCATCTGCGGCG
>32.56|1890484|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
CGCAGGACGTGAGTCCAGGTGCCGTTCCATGTG
>32.57|1890545|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
TCGATACATATGCCGATGTCGTCGCGGATAACA
>32.58|1890606|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
CACGCGTACAACGAAAGCGGCTGCACGCCACCC
>32.59|1890667|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
ACTGTGATGCGCTGGAACATCTGGGACGAGGTC
>32.60|1890728|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
CGCTTGCCAAGGGCGCGGTTGCGCACGACGCGG
>32.61|1890789|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
CAGCGGACGACCGGCAAGGTCTCGATGCGAGAC
>32.62|1890850|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
GTGAGTTGGGCTCTCCCCTGCCGGATTCCGTAG
>32.63|1890911|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
ATGATGACGGCCCCGGCCCTGCGGTACCGGCGA
>32.64|1890972|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR
CAGCATGACCGCCCTAAACGGGCAAGTGAAGCC

CRISPR arrays and Neighbor proteins around NZ_CP040505_32

CRISPR arrays

The CRISPR arrays of NZ_CP040505_32

>merge|NZ_CP040505|32|1887100-1891032|CRISPRCasFinder,CRT,PILER-CR
GAGTCATCCCTACTCGCGCGGAAAGCACCTGTTCCTGAACATCCCGGACACCCAGCAGGCCGATTCATCCCCGCTCACGCGGGGAGCACCACCCAGCGCTATGCCGAACCTCCACACAACGCGGCTCATCCCCGCTCACGCGGGGAGCACGGCTATCAGGATGCGCGCCGAGCCCTGTATGCGGGCTCATCCCCGCTCACGCGAGGAGCACATCCAAAGCATCTTCACCGTCATCCAAGGCATCGGCTCATCCCCGCTCACGCGGGGAGCACGGCATGCTCGCCACCGTCCTCGTGTTCGTCCGGGGCTCATCCCCGCTCACGCGGGGAGCACTCCATGTATCGGGGATCGCGCGCGCATCGGGTGGGCTCATCCCCGCTCACGCGGGGAGCACACCCCATTGGCGTTGCAGAGCAGATCCGCAGACGGCTCATCCCCGCTCACGCGGGGAGCACAGTGTCAAGGTTTAGGCATTCTCATGTCCCACTGGCTCATCCCCGCTCACGCGGGGAGCACTGCCACCATAATTCAACCCCACTTTGCCAACTCGGCTCATCCCCGCTCACGCGGGGAGCACGAGCAGGGGAGGGGTGAGGGGCTGTGAGGGGCCGGCTCATCCCCGCTCACGCGGGGAGCACATCTCCGCTTGCGGTGAGATCGTCACCGAAATCGGCTCATCCCCGCTCACGCGGGGAGCACACCCGCACGAGGTGGAGCGTGCTGCCCCCTGTGGGCTCATCCCCGCTCACGCGGGAAGCACTTCATGATCGCCTGAACGATCTGTGCCTCAGCTGGCTCATCCCCGCTCACGCGGGGAGCACGCGATCGCCACAGCCGTCGGCGTCATCATGGCCGGCTCATCCCCGCTCACGCGGGGAGCACGTCCACACGGAGAAACGCCAGTCCGAAATGACCGGCTCATCCCCGCTCACGCGGGGAGCACCGCCTCCATGCCTTTGTTTTTGAGGATCTGCCAGGCTCATCCCCGCTCACGCGGGGAGCACGCCATTGATTACGCGGCGAAGTATTTCCGTGTCGGCTCATCCCCGCTCACGCGGGGAGCACCCTCAGGATTCGTGGCCGCAGGCGCTGAGGAGGAGGCTCATCCCCGCTCACGCGGGGAGCACGCCCCTACCGGCGCCCGGTTCGACCGAGACCGGGGCTCATCCCCGCTCACGCGGGGAGCACCGTTTCACGCCAGAAACTCTTGTCCCACGCTCCGGCTCATCCCCGCTCACGCGGGGAGCACTTCTTGGATCGCTTGGACCGCTCCTGCAAAAACGGCTCATCCCCGCTCACGCGGGGAGCACGATCTCAGTTTTCCCGAAGCGCATCGGCTCGGAGGCTCATCCCCGCTCACGCGGGGAGCACTGCGTCGCTGAATCCGCTTCGGCATAGTCGTTCGGCTCATCCCCGCTCACGCGGGGAGCACCGACGCGGTCTTCGAGGGGAATTGGATCGGATCGGCTCATCCCCGCTCACGCGGGGAGCACGGCGGTTTCCTCACGGATGTCACGAAACAGGCGGGCTCATCCCCGCTCACGCGGGGAGCACTGTCACCGAGTTCACGAAGCGACTACGCTTACGGACTCATCCCCGCTCACGCGGGGAGCACGTGATGTTGTCAAGAATGACTTTGAGGCCAACCGGCTCATCCCCGCTCACGCGGGGAGCACCCCGTACCCAAACGCACATGAGGCGGCGCATGAGGCTCATCCCCGCTCACGCGGGGAGCACGACTATTGCGCCGTCAGACAATTTCCTACGGGGGGCTCATCCCCGCTCACGCGGGGAGCACAGTGCGCCGGTGATCTTGTCGGCGCCGATCGCAGGCTCATCCCCGCTCACGCGGGGAGCACGGCGGTTTCCTCACGGATGTCACGAAACAGGCGGGCTCATCCCCGCTCACGCGGGGAGCACGCGCCGTCATCGACGAGGCCCGCAAACTCGCTGGGCTCATCCCCGCTCACGCGGGGAGCACTTTCGCATGGCCGCCAGCTCAGCCTGCGTGACCGGCTCATCCCCGCTCACGCGGGGAGCACCCCAGACTTTGGACGACTCGAGAAACTGCGGAGGGCTCATCCCCGCTCACGCGGGGAGCACCAACATCGATTACACTCATCGCGCGTCCTCCACGGCTCATCCCCGCTCACGCGGGGAGCACCTGCGTTGCAATCCGCTCCTGCTCCGATCCGACGGCTCATCCCCGCTCACGCGGGGAGCACCTGCAACGGCGCAATATGACGCTCGTCTGCCTGGGCTCATCCCCGCTCACGCGGGGAGCACGTAACGGAACGCGCCGGGGTTCTTCGGGTCGAGGGCTCATCCCCGCTCACGCGGGGAGCACTAACCCAGCTCGTCGCCTCTATCACCCATCGCAGGCTCATCCCCGCTCACGCGGGGAGCACGTCAAGGTCTCCGTCGTCGCGAACACGAAGCAAGGCTCATTCCCGCTCACGCGGGGAGCACGACGCGGCGCTCAGTGTATGCCTCGCTGAGGAGGGCTCATCCCCGCTCACGCGGGGAGCACAACCCCGACAACTACGCGGTCGGCGATGCTCTCGGCTCATCCCCGCTCACGCGGGGAGCACTGCCTTCTTGAGGCCAGCGATTCTCGCGAGCGTGGCTCATCCCCGCTCACGCGGGGAGCACTAAGCCCAGCGTCTGACCTGGGGGGTGAGCCAGGGCTCATCCCCGCTCACGCGGGGAGCACATCAAGAAGCCCAGGCCGCCGCCACGCTCGCGCGGCTCATCCCCGCTCACGCGGGGAGCACACGACGGCGACGCCGGTGATGGGGTACCAGATGGGCTCATCCCCGCTCACGCGGGGAGCACGTCACAGCAGACACGCGCAAAGCCAAGCGAGCCGGCTCATCCCCGCTCACGCGGGGAGCACGCCCTGTCCGCCGTCCTCGCCGCCAACCCGATCGGCTCATCCCCGCTCACGCGGGGAGCACCTGGATCGCGTCTGCTCGGGCGTCTTTCCTTGCGGCTCATCCCCGCTCACGCGGGGAGCACCTAGGCGTTTCGCCCGCCGTCCTCATTGACGGCGGCTCATCCCCGCTCACGCGGGGAGCACGGTTGGGAGTCGCACAGCCTGTGGCCTGCGACGGGCTCATCCCCGCTCACGCGGGGAGCACGGAGCCGGGGCGGGCTTCTCCTCCGTCTTCTTCGGCTCATCCCCGCTCACGCGGGGAGCACTCCCGAAGGGCCAGGATGTTGCAGTAAATCCGGGGCTCATCCCCGCTCACGCGGGGAGCACCACGCGTACAACGAAAGCGGCTGCACGCCACCCGGCTCATCCCCGCTCACGCGGGGAGCACAGAGAGTGGTTGCTGGGCGCCGCATCTGCGGCGGGCTCATCCCCGCTCACGCGGGGAGCACCGCAGGACGTGAGTCCAGGTGCCGTTCCATGTGGGCTCATCCCCGCTCACGCGGGGAGCACTCGATACATATGCCGATGTCGTCGCGGATAACAGGCTCATCCCCGCTCACGCGGGGAGCACCACGCGTACAACGAAAGCGGCTGCACGCCACCCGGCTCATCCCCGCTCACGCGGGGAGCACACTGTGATGCGCTGGAACATCTGGGACGAGGTCGGCTCATCCCCGCTCACGCGGGGAGCACCGCTTGCCAAGGGCGCGGTTGCGCACGACGCGGGGCTCATCCCCGCTCACGCGGGGAGCACCAGCGGACGACCGGCAAGGTCTCGATGCGAGACGGCTCATCCCCGCTCACGCGGGGAGCACGTGAGTTGGGCTCTCCCCTGCCGGATTCCGTAGGGCTCATCCCCGCTCACGCGGGGAGCACATGATGACGGCCCCGGCCCTGCGGTACCGGCGAGGCTCATCCCCGCTCACGCGGGGAGCACCAGCATGACCGCCCTAAACGGGCAAGTGAAGCCGGCTCATCCCCGCTCACGCGGGGAGCAC

>NZ_CP040505|32|29|1887100-1891032|CRISPRCasFinder
GAGTCATCCCTACTCGCGCGGAAAGCAC	CTGTTCCTGAACATCCCGGACACCCAGCAGGCC
GATTCATCCCCGCTCACGCGGGGAGCAC	CACCCAGCGCTATGCCGAACCTCCACACAACGC
GGCTCATCCCCGCTCACGCGGGGAGCAC	GGCTATCAGGATGCGCGCCGAGCCCTGTATGCG
GGCTCATCCCCGCTCACGCGAGGAGCAC	ATCCAAAGCATCTTCACCGTCATCCAAGGCATC
GGCTCATCCCCGCTCACGCGGGGAGCAC	GGCATGCTCGCCACCGTCCTCGTGTTCGTCCGG
GGCTCATCCCCGCTCACGCGGGGAGCAC	TCCATGTATCGGGGATCGCGCGCGCATCGGGTG
GGCTCATCCCCGCTCACGCGGGGAGCAC	ACCCCATTGGCGTTGCAGAGCAGATCCGCAGAC
GGCTCATCCCCGCTCACGCGGGGAGCAC	AGTGTCAAGGTTTAGGCATTCTCATGTCCCACT
GGCTCATCCCCGCTCACGCGGGGAGCAC	TGCCACCATAATTCAACCCCACTTTGCCAACTC
GGCTCATCCCCGCTCACGCGGGGAGCAC	GAGCAGGGGAGGGGTGAGGGGCTGTGAGGGGCC
GGCTCATCCCCGCTCACGCGGGGAGCAC	ATCTCCGCTTGCGGTGAGATCGTCACCGAAATC
GGCTCATCCCCGCTCACGCGGGGAGCAC	ACCCGCACGAGGTGGAGCGTGCTGCCCCCTGTG
GGCTCATCCCCGCTCACGCGGGAAGCAC	TTCATGATCGCCTGAACGATCTGTGCCTCAGCT
GGCTCATCCCCGCTCACGCGGGGAGCAC	GCGATCGCCACAGCCGTCGGCGTCATCATGGCC
GGCTCATCCCCGCTCACGCGGGGAGCAC	GTCCACACGGAGAAACGCCAGTCCGAAATGACC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CGCCTCCATGCCTTTGTTTTTGAGGATCTGCCA
GGCTCATCCCCGCTCACGCGGGGAGCAC	GCCATTGATTACGCGGCGAAGTATTTCCGTGTC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CCTCAGGATTCGTGGCCGCAGGCGCTGAGGAGGA
GGCTCATCCCCGCTCACGCGGGGAGCAC	GCCCCTACCGGCGCCCGGTTCGACCGAGACCGG
GGCTCATCCCCGCTCACGCGGGGAGCAC	CGTTTCACGCCAGAAACTCTTGTCCCACGCTCC
GGCTCATCCCCGCTCACGCGGGGAGCAC	TTCTTGGATCGCTTGGACCGCTCCTGCAAAAAC
GGCTCATCCCCGCTCACGCGGGGAGCAC	GATCTCAGTTTTCCCGAAGCGCATCGGCTCGGA
GGCTCATCCCCGCTCACGCGGGGAGCAC	TGCGTCGCTGAATCCGCTTCGGCATAGTCGTTC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CGACGCGGTCTTCGAGGGGAATTGGATCGGATC
GGCTCATCCCCGCTCACGCGGGGAGCAC	GGCGGTTTCCTCACGGATGTCACGAAACAGGCG
GGCTCATCCCCGCTCACGCGGGGAGCAC	TGTCACCGAGTTCACGAAGCGACTACGCTTACG
GACTCATCCCCGCTCACGCGGGGAGCAC	GTGATGTTGTCAAGAATGACTTTGAGGCCAACC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CCCGTACCCAAACGCACATGAGGCGGCGCATGA
GGCTCATCCCCGCTCACGCGGGGAGCAC	GACTATTGCGCCGTCAGACAATTTCCTACGGGG
GGCTCATCCCCGCTCACGCGGGGAGCAC	AGTGCGCCGGTGATCTTGTCGGCGCCGATCGCA
GGCTCATCCCCGCTCACGCGGGGAGCAC	GGCGGTTTCCTCACGGATGTCACGAAACAGGCG
GGCTCATCCCCGCTCACGCGGGGAGCAC	GCGCCGTCATCGACGAGGCCCGCAAACTCGCTG
GGCTCATCCCCGCTCACGCGGGGAGCAC	TTTCGCATGGCCGCCAGCTCAGCCTGCGTGACC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CCCAGACTTTGGACGACTCGAGAAACTGCGGAG
GGCTCATCCCCGCTCACGCGGGGAGCAC	CAACATCGATTACACTCATCGCGCGTCCTCCAC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CTGCGTTGCAATCCGCTCCTGCTCCGATCCGAC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CTGCAACGGCGCAATATGACGCTCGTCTGCCTG
GGCTCATCCCCGCTCACGCGGGGAGCAC	GTAACGGAACGCGCCGGGGTTCTTCGGGTCGAG
GGCTCATCCCCGCTCACGCGGGGAGCAC	TAACCCAGCTCGTCGCCTCTATCACCCATCGCA
GGCTCATCCCCGCTCACGCGGGGAGCAC	GTCAAGGTCTCCGTCGTCGCGAACACGAAGCAA
GGCTCATTCCCGCTCACGCGGGGAGCAC	GACGCGGCGCTCAGTGTATGCCTCGCTGAGGAG
GGCTCATCCCCGCTCACGCGGGGAGCAC	AACCCCGACAACTACGCGGTCGGCGATGCTCTC
GGCTCATCCCCGCTCACGCGGGGAGCAC	TGCCTTCTTGAGGCCAGCGATTCTCGCGAGCGT
GGCTCATCCCCGCTCACGCGGGGAGCAC	TAAGCCCAGCGTCTGACCTGGGGGGTGAGCCAG
GGCTCATCCCCGCTCACGCGGGGAGCAC	ATCAAGAAGCCCAGGCCGCCGCCACGCTCGCGC
GGCTCATCCCCGCTCACGCGGGGAGCAC	ACGACGGCGACGCCGGTGATGGGGTACCAGATG
GGCTCATCCCCGCTCACGCGGGGAGCAC	GTCACAGCAGACACGCGCAAAGCCAAGCGAGCC
GGCTCATCCCCGCTCACGCGGGGAGCAC	GCCCTGTCCGCCGTCCTCGCCGCCAACCCGATC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CTGGATCGCGTCTGCTCGGGCGTCTTTCCTTGC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CTAGGCGTTTCGCCCGCCGTCCTCATTGACGGC
GGCTCATCCCCGCTCACGCGGGGAGCAC	GGTTGGGAGTCGCACAGCCTGTGGCCTGCGACG
GGCTCATCCCCGCTCACGCGGGGAGCAC	GGAGCCGGGGCGGGCTTCTCCTCCGTCTTCTTC
GGCTCATCCCCGCTCACGCGGGGAGCAC	TCCCGAAGGGCCAGGATGTTGCAGTAAATCCGG
GGCTCATCCCCGCTCACGCGGGGAGCAC	CACGCGTACAACGAAAGCGGCTGCACGCCACCC
GGCTCATCCCCGCTCACGCGGGGAGCAC	AGAGAGTGGTTGCTGGGCGCCGCATCTGCGGCG
GGCTCATCCCCGCTCACGCGGGGAGCAC	CGCAGGACGTGAGTCCAGGTGCCGTTCCATGTG
GGCTCATCCCCGCTCACGCGGGGAGCAC	TCGATACATATGCCGATGTCGTCGCGGATAACA
GGCTCATCCCCGCTCACGCGGGGAGCAC	CACGCGTACAACGAAAGCGGCTGCACGCCACCC
GGCTCATCCCCGCTCACGCGGGGAGCAC	ACTGTGATGCGCTGGAACATCTGGGACGAGGTC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CGCTTGCCAAGGGCGCGGTTGCGCACGACGCGG
GGCTCATCCCCGCTCACGCGGGGAGCAC	CAGCGGACGACCGGCAAGGTCTCGATGCGAGAC
GGCTCATCCCCGCTCACGCGGGGAGCAC	GTGAGTTGGGCTCTCCCCTGCCGGATTCCGTAG
GGCTCATCCCCGCTCACGCGGGGAGCAC	ATGATGACGGCCCCGGCCCTGCGGTACCGGCGA
GGCTCATCCCCGCTCACGCGGGGAGCAC	CAGCATGACCGCCCTAAACGGGCAAGTGAAGCC
GGCTCATCCCCGCTCACGCGGGGAGCAC

>NZ_CP040505|32|6|1887100-1891032|CRT
GAGTCATCCCTACTCGCGCGGAAAGCAC	CTGTTCCTGAACATCCCGGACACCCAGCAGGCC
GATTCATCCCCGCTCACGCGGGGAGCAC	CACCCAGCGCTATGCCGAACCTCCACACAACGC
GGCTCATCCCCGCTCACGCGGGGAGCAC	GGCTATCAGGATGCGCGCCGAGCCCTGTATGCG
GGCTCATCCCCGCTCACGCGAGGAGCAC	ATCCAAAGCATCTTCACCGTCATCCAAGGCATC
GGCTCATCCCCGCTCACGCGGGGAGCAC	GGCATGCTCGCCACCGTCCTCGTGTTCGTCCGG
GGCTCATCCCCGCTCACGCGGGGAGCAC	TCCATGTATCGGGGATCGCGCGCGCATCGGGTG
GGCTCATCCCCGCTCACGCGGGGAGCAC	ACCCCATTGGCGTTGCAGAGCAGATCCGCAGAC
GGCTCATCCCCGCTCACGCGGGGAGCAC	AGTGTCAAGGTTTAGGCATTCTCATGTCCCACT
GGCTCATCCCCGCTCACGCGGGGAGCAC	TGCCACCATAATTCAACCCCACTTTGCCAACTC
GGCTCATCCCCGCTCACGCGGGGAGCAC	GAGCAGGGGAGGGGTGAGGGGCTGTGAGGGGCC
GGCTCATCCCCGCTCACGCGGGGAGCAC	ATCTCCGCTTGCGGTGAGATCGTCACCGAAATC
GGCTCATCCCCGCTCACGCGGGGAGCAC	ACCCGCACGAGGTGGAGCGTGCTGCCCCCTGTG
GGCTCATCCCCGCTCACGCGGGAAGCAC	TTCATGATCGCCTGAACGATCTGTGCCTCAGCT
GGCTCATCCCCGCTCACGCGGGGAGCAC	GCGATCGCCACAGCCGTCGGCGTCATCATGGCC
GGCTCATCCCCGCTCACGCGGGGAGCAC	GTCCACACGGAGAAACGCCAGTCCGAAATGACC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CGCCTCCATGCCTTTGTTTTTGAGGATCTGCCA
GGCTCATCCCCGCTCACGCGGGGAGCAC	GCCATTGATTACGCGGCGAAGTATTTCCGTGTC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CCTCAGGATTCGTGGCCGCAGGCGCTGAGGAGGA
GGCTCATCCCCGCTCACGCGGGGAGCAC	GCCCCTACCGGCGCCCGGTTCGACCGAGACCGG
GGCTCATCCCCGCTCACGCGGGGAGCAC	CGTTTCACGCCAGAAACTCTTGTCCCACGCTCC
GGCTCATCCCCGCTCACGCGGGGAGCAC	TTCTTGGATCGCTTGGACCGCTCCTGCAAAAAC
GGCTCATCCCCGCTCACGCGGGGAGCAC	GATCTCAGTTTTCCCGAAGCGCATCGGCTCGGA
GGCTCATCCCCGCTCACGCGGGGAGCAC	TGCGTCGCTGAATCCGCTTCGGCATAGTCGTTC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CGACGCGGTCTTCGAGGGGAATTGGATCGGATC
GGCTCATCCCCGCTCACGCGGGGAGCAC	GGCGGTTTCCTCACGGATGTCACGAAACAGGCG
GGCTCATCCCCGCTCACGCGGGGAGCAC	TGTCACCGAGTTCACGAAGCGACTACGCTTACG
GACTCATCCCCGCTCACGCGGGGAGCAC	GTGATGTTGTCAAGAATGACTTTGAGGCCAACC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CCCGTACCCAAACGCACATGAGGCGGCGCATGA
GGCTCATCCCCGCTCACGCGGGGAGCAC	GACTATTGCGCCGTCAGACAATTTCCTACGGGG
GGCTCATCCCCGCTCACGCGGGGAGCAC	AGTGCGCCGGTGATCTTGTCGGCGCCGATCGCA
GGCTCATCCCCGCTCACGCGGGGAGCAC	GGCGGTTTCCTCACGGATGTCACGAAACAGGCG
GGCTCATCCCCGCTCACGCGGGGAGCAC	GCGCCGTCATCGACGAGGCCCGCAAACTCGCTG
GGCTCATCCCCGCTCACGCGGGGAGCAC	TTTCGCATGGCCGCCAGCTCAGCCTGCGTGACC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CCCAGACTTTGGACGACTCGAGAAACTGCGGAG
GGCTCATCCCCGCTCACGCGGGGAGCAC	CAACATCGATTACACTCATCGCGCGTCCTCCAC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CTGCGTTGCAATCCGCTCCTGCTCCGATCCGAC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CTGCAACGGCGCAATATGACGCTCGTCTGCCTG
GGCTCATCCCCGCTCACGCGGGGAGCAC	GTAACGGAACGCGCCGGGGTTCTTCGGGTCGAG
GGCTCATCCCCGCTCACGCGGGGAGCAC	TAACCCAGCTCGTCGCCTCTATCACCCATCGCA
GGCTCATCCCCGCTCACGCGGGGAGCAC	GTCAAGGTCTCCGTCGTCGCGAACACGAAGCAA
GGCTCATTCCCGCTCACGCGGGGAGCAC	GACGCGGCGCTCAGTGTATGCCTCGCTGAGGAG
GGCTCATCCCCGCTCACGCGGGGAGCAC	AACCCCGACAACTACGCGGTCGGCGATGCTCTC
GGCTCATCCCCGCTCACGCGGGGAGCAC	TGCCTTCTTGAGGCCAGCGATTCTCGCGAGCGT
GGCTCATCCCCGCTCACGCGGGGAGCAC	TAAGCCCAGCGTCTGACCTGGGGGGTGAGCCAG
GGCTCATCCCCGCTCACGCGGGGAGCAC	ATCAAGAAGCCCAGGCCGCCGCCACGCTCGCGC
GGCTCATCCCCGCTCACGCGGGGAGCAC	ACGACGGCGACGCCGGTGATGGGGTACCAGATG
GGCTCATCCCCGCTCACGCGGGGAGCAC	GTCACAGCAGACACGCGCAAAGCCAAGCGAGCC
GGCTCATCCCCGCTCACGCGGGGAGCAC	GCCCTGTCCGCCGTCCTCGCCGCCAACCCGATC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CTGGATCGCGTCTGCTCGGGCGTCTTTCCTTGC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CTAGGCGTTTCGCCCGCCGTCCTCATTGACGGC
GGCTCATCCCCGCTCACGCGGGGAGCAC	GGTTGGGAGTCGCACAGCCTGTGGCCTGCGACG
GGCTCATCCCCGCTCACGCGGGGAGCAC	GGAGCCGGGGCGGGCTTCTCCTCCGTCTTCTTC
GGCTCATCCCCGCTCACGCGGGGAGCAC	TCCCGAAGGGCCAGGATGTTGCAGTAAATCCGG
GGCTCATCCCCGCTCACGCGGGGAGCAC	CACGCGTACAACGAAAGCGGCTGCACGCCACCC
GGCTCATCCCCGCTCACGCGGGGAGCAC	AGAGAGTGGTTGCTGGGCGCCGCATCTGCGGCG
GGCTCATCCCCGCTCACGCGGGGAGCAC	CGCAGGACGTGAGTCCAGGTGCCGTTCCATGTG
GGCTCATCCCCGCTCACGCGGGGAGCAC	TCGATACATATGCCGATGTCGTCGCGGATAACA
GGCTCATCCCCGCTCACGCGGGGAGCAC	CACGCGTACAACGAAAGCGGCTGCACGCCACCC
GGCTCATCCCCGCTCACGCGGGGAGCAC	ACTGTGATGCGCTGGAACATCTGGGACGAGGTC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CGCTTGCCAAGGGCGCGGTTGCGCACGACGCGG
GGCTCATCCCCGCTCACGCGGGGAGCAC	CAGCGGACGACCGGCAAGGTCTCGATGCGAGAC
GGCTCATCCCCGCTCACGCGGGGAGCAC	GTGAGTTGGGCTCTCCCCTGCCGGATTCCGTAG
GGCTCATCCCCGCTCACGCGGGGAGCAC	ATGATGACGGCCCCGGCCCTGCGGTACCGGCGA
GGCTCATCCCCGCTCACGCGGGGAGCAC	CAGCATGACCGCCCTAAACGGGCAAGTGAAGCC
GGCTCATCCCCGCTCACGCGGGGAGCAC

>NZ_CP040505|32|5|1887222-1891032|PILER-CR
GGCTCATCCCCGCTCACGCGGGGAGCAC	GGCTATCAGGATGCGCGCCGAGCCCTGTATGCG
GGCTCATCCCCGCTCACGCGAGGAGCAC	ATCCAAAGCATCTTCACCGTCATCCAAGGCATC
GGCTCATCCCCGCTCACGCGGGGAGCAC	GGCATGCTCGCCACCGTCCTCGTGTTCGTCCGG
GGCTCATCCCCGCTCACGCGGGGAGCAC	TCCATGTATCGGGGATCGCGCGCGCATCGGGTG
GGCTCATCCCCGCTCACGCGGGGAGCAC	ACCCCATTGGCGTTGCAGAGCAGATCCGCAGAC
GGCTCATCCCCGCTCACGCGGGGAGCAC	AGTGTCAAGGTTTAGGCATTCTCATGTCCCACT
GGCTCATCCCCGCTCACGCGGGGAGCAC	TGCCACCATAATTCAACCCCACTTTGCCAACTC
GGCTCATCCCCGCTCACGCGGGGAGCAC	GAGCAGGGGAGGGGTGAGGGGCTGTGAGGGGCC
GGCTCATCCCCGCTCACGCGGGGAGCAC	ATCTCCGCTTGCGGTGAGATCGTCACCGAAATC
GGCTCATCCCCGCTCACGCGGGGAGCAC	ACCCGCACGAGGTGGAGCGTGCTGCCCCCTGTG
GGCTCATCCCCGCTCACGCGGGAAGCAC	TTCATGATCGCCTGAACGATCTGTGCCTCAGCT
GGCTCATCCCCGCTCACGCGGGGAGCAC	GCGATCGCCACAGCCGTCGGCGTCATCATGGCC
GGCTCATCCCCGCTCACGCGGGGAGCAC	GTCCACACGGAGAAACGCCAGTCCGAAATGACC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CGCCTCCATGCCTTTGTTTTTGAGGATCTGCCA
GGCTCATCCCCGCTCACGCGGGGAGCAC	GCCATTGATTACGCGGCGAAGTATTTCCGTGTC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CCTCAGGATTCGTGGCCGCAGGCGCTGAGGAGGA
GGCTCATCCCCGCTCACGCGGGGAGCAC	GCCCCTACCGGCGCCCGGTTCGACCGAGACCGG
GGCTCATCCCCGCTCACGCGGGGAGCAC	CGTTTCACGCCAGAAACTCTTGTCCCACGCTCC
GGCTCATCCCCGCTCACGCGGGGAGCAC	TTCTTGGATCGCTTGGACCGCTCCTGCAAAAAC
GGCTCATCCCCGCTCACGCGGGGAGCAC	GATCTCAGTTTTCCCGAAGCGCATCGGCTCGGA
GGCTCATCCCCGCTCACGCGGGGAGCAC	TGCGTCGCTGAATCCGCTTCGGCATAGTCGTTC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CGACGCGGTCTTCGAGGGGAATTGGATCGGATC
GGCTCATCCCCGCTCACGCGGGGAGCAC	GGCGGTTTCCTCACGGATGTCACGAAACAGGCG
GGCTCATCCCCGCTCACGCGGGGAGCAC	TGTCACCGAGTTCACGAAGCGACTACGCTTACG
GACTCATCCCCGCTCACGCGGGGAGCAC	GTGATGTTGTCAAGAATGACTTTGAGGCCAACC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CCCGTACCCAAACGCACATGAGGCGGCGCATGA
GGCTCATCCCCGCTCACGCGGGGAGCAC	GACTATTGCGCCGTCAGACAATTTCCTACGGGG
GGCTCATCCCCGCTCACGCGGGGAGCAC	AGTGCGCCGGTGATCTTGTCGGCGCCGATCGCA
GGCTCATCCCCGCTCACGCGGGGAGCAC	GGCGGTTTCCTCACGGATGTCACGAAACAGGCG
GGCTCATCCCCGCTCACGCGGGGAGCAC	GCGCCGTCATCGACGAGGCCCGCAAACTCGCTG
GGCTCATCCCCGCTCACGCGGGGAGCAC	TTTCGCATGGCCGCCAGCTCAGCCTGCGTGACC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CCCAGACTTTGGACGACTCGAGAAACTGCGGAG
GGCTCATCCCCGCTCACGCGGGGAGCAC	CAACATCGATTACACTCATCGCGCGTCCTCCAC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CTGCGTTGCAATCCGCTCCTGCTCCGATCCGAC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CTGCAACGGCGCAATATGACGCTCGTCTGCCTG
GGCTCATCCCCGCTCACGCGGGGAGCAC	GTAACGGAACGCGCCGGGGTTCTTCGGGTCGAG
GGCTCATCCCCGCTCACGCGGGGAGCAC	TAACCCAGCTCGTCGCCTCTATCACCCATCGCA
GGCTCATCCCCGCTCACGCGGGGAGCAC	GTCAAGGTCTCCGTCGTCGCGAACACGAAGCAA
GGCTCATTCCCGCTCACGCGGGGAGCAC	GACGCGGCGCTCAGTGTATGCCTCGCTGAGGAG
GGCTCATCCCCGCTCACGCGGGGAGCAC	AACCCCGACAACTACGCGGTCGGCGATGCTCTC
GGCTCATCCCCGCTCACGCGGGGAGCAC	TGCCTTCTTGAGGCCAGCGATTCTCGCGAGCGT
GGCTCATCCCCGCTCACGCGGGGAGCAC	TAAGCCCAGCGTCTGACCTGGGGGGTGAGCCAG
GGCTCATCCCCGCTCACGCGGGGAGCAC	ATCAAGAAGCCCAGGCCGCCGCCACGCTCGCGC
GGCTCATCCCCGCTCACGCGGGGAGCAC	ACGACGGCGACGCCGGTGATGGGGTACCAGATG
GGCTCATCCCCGCTCACGCGGGGAGCAC	GTCACAGCAGACACGCGCAAAGCCAAGCGAGCC
GGCTCATCCCCGCTCACGCGGGGAGCAC	GCCCTGTCCGCCGTCCTCGCCGCCAACCCGATC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CTGGATCGCGTCTGCTCGGGCGTCTTTCCTTGC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CTAGGCGTTTCGCCCGCCGTCCTCATTGACGGC
GGCTCATCCCCGCTCACGCGGGGAGCAC	GGTTGGGAGTCGCACAGCCTGTGGCCTGCGACG
GGCTCATCCCCGCTCACGCGGGGAGCAC	GGAGCCGGGGCGGGCTTCTCCTCCGTCTTCTTC
GGCTCATCCCCGCTCACGCGGGGAGCAC	TCCCGAAGGGCCAGGATGTTGCAGTAAATCCGG
GGCTCATCCCCGCTCACGCGGGGAGCAC	CACGCGTACAACGAAAGCGGCTGCACGCCACCC
GGCTCATCCCCGCTCACGCGGGGAGCAC	AGAGAGTGGTTGCTGGGCGCCGCATCTGCGGCG
GGCTCATCCCCGCTCACGCGGGGAGCAC	CGCAGGACGTGAGTCCAGGTGCCGTTCCATGTG
GGCTCATCCCCGCTCACGCGGGGAGCAC	TCGATACATATGCCGATGTCGTCGCGGATAACA
GGCTCATCCCCGCTCACGCGGGGAGCAC	CACGCGTACAACGAAAGCGGCTGCACGCCACCC
GGCTCATCCCCGCTCACGCGGGGAGCAC	ACTGTGATGCGCTGGAACATCTGGGACGAGGTC
GGCTCATCCCCGCTCACGCGGGGAGCAC	CGCTTGCCAAGGGCGCGGTTGCGCACGACGCGG
GGCTCATCCCCGCTCACGCGGGGAGCAC	CAGCGGACGACCGGCAAGGTCTCGATGCGAGAC
GGCTCATCCCCGCTCACGCGGGGAGCAC	GTGAGTTGGGCTCTCCCCTGCCGGATTCCGTAG
GGCTCATCCCCGCTCACGCGGGGAGCAC	ATGATGACGGCCCCGGCCCTGCGGTACCGGCGA
GGCTCATCCCCGCTCACGCGGGGAGCAC	CAGCATGACCGCCCTAAACGGGCAAGTGAAGCC
GGCTCATCCCCGCTCACGCGGGGAGCAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005963242.1|1893891_1895016_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl|CDD|378153
NZ_CP040505.1|WP_005963235.1|1900851_1901829_-|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl|CDD|223640
NZ_CP040505.1|WP_005963273.1|1877373_1878024_-|FABP-family-protein	unknown	unknown	gnl|CDD|378046
NZ_CP040505.1|WP_051057818.1|1884763_1885726_-|SPFH-domain-containing-protein	unknown	unknown	gnl|CDD|259800
NZ_CP040505.1|WP_005963245.1|1891461_1892415_-|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl|CDD|274693
NZ_CP040505.1|WP_005963237.1|1897380_1900212_-|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl|CDD|182031
NZ_CP040505.1|WP_131247235.1|1880598_1880892_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_131247423.1|1902327_1903494_+|IS1249-family-transposase	unknown	unknown	gnl|CDD|307151
NZ_CP040505.1|WP_040313999.1|1875922_1877086_-|folate-binding-protein-YgfZ	unknown	unknown	gnl|CDD|223431
NZ_CP040505.1|WP_005963277.1|1875497_1875923_-|D-tyrosyl-tRNA(Tyr)-deacylase	unknown	unknown	gnl|CDD|235383
NZ_CP040505.1|WP_040313612.1|1891050_1891455_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl|CDD|378244
NZ_CP040505.1|WP_005963243.1|1893169_1893895_-|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl|CDD|187776
NZ_CP040505.1|WP_005963267.1|1881187_1882468_-|adenylosuccinate-synthase	unknown	unknown	gnl|CDD|234904
NZ_CP040505.1|WP_131247234.1|1886113_1886578_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005963263.1|1884469_1884694_-|hypothetical-protein	unknown	unknown	gnl|CDD|227214
NZ_CP040505.1|WP_005963271.1|1878234_1878726_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_083879462.1|1892411_1893170_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl|CDD|378050
NZ_CP040505.1|WP_005963265.1|1882945_1884208_-|ATP-binding-protein	unknown	unknown	gnl|CDD|379306
NZ_CP040505.1|WP_005963240.1|1895030_1895720_-|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl|CDD|378191
NZ_CP040505.1|WP_005963238.1|1895716_1897381_-|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	pfam09481_cas8e_CAS-I-E	gnl|CDD|378189

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP040505.1|WP_005963242.1|1893891_1895016_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	2.7e-109	360.7	0.0
NZ_CP040505.1|WP_040313612.1|1891050_1891455_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	1.8e-32	106.1	0.1
NZ_CP040505.1|WP_005963243.1|1893169_1893895_-|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	2.4e-46	152.5	0.4
NZ_CP040505.1|WP_083879462.1|1892411_1893170_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	8.3e-55	180.9	0.0
NZ_CP040505.1|WP_005963237.1|1897380_1900212_-|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	5e-66	217.8	0.0
NZ_CP040505.1|WP_005963245.1|1891461_1892415_-|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	4.3e-105	345.3	0.1
NZ_CP040505.1|WP_005963240.1|1895030_1895720_-|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	2.9e-29	96.8	1.1
NZ_CP040505.1|WP_005963238.1|1895716_1897381_-|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	pfam09481_cas8e_CAS-I-E	1.1e-112	372.2	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005963242.1|1893891_1895016_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl|CDD|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	5.26921e-148
NZ_CP040505.1|WP_005963273.1|1877373_1878024_-|FABP-family-protein	gnl|CDD|378046	pfam08768, DUF1794, Domain of unknown function (DUF1794). This domain forms a beta barrel structure but the function is unknown. The GO annotation for this protein indicates that the protein has a function in nematode larval development and has a positive regulation on growth rate.	3.38042e-13
NZ_CP040505.1|WP_051057818.1|1884763_1885726_-|SPFH-domain-containing-protein	gnl|CDD|259800	cd03402, SPFH_like_u2, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model summarizes an uncharacterized family of proteins similar to stomatin, prohibitin, flotillin, HflK/C (SPFH) and podocin. The conserved domain common to the SPFH superfamily has also been referred to as the Band 7 domain. Many superfamily members are associated with lipid rafts. Individual proteins of the SPFH superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease, and in cancer invasion and metastasis. Mutations in the podocin gene give rise to autosomal recessive steroid resistant nephritic syndrome.	4.13032e-120
NZ_CP040505.1|WP_005963245.1|1891461_1892415_-|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl|CDD|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	4.25733e-124
NZ_CP040505.1|WP_005963237.1|1897380_1900212_-|CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	3.02106e-82
NZ_CP040505.1|WP_083879462.1|1892411_1893170_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl|CDD|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	1.01495e-61
NZ_CP040505.1|WP_131247423.1|1902327_1903494_+|IS1249-family-transposase	gnl|CDD|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.88455e-06
NZ_CP040505.1|WP_040313999.1|1875922_1877086_-|folate-binding-protein-YgfZ	gnl|CDD|223431	COG0354, COG0354, Predicted aminomethyltransferase related to GcvT [General function prediction only].	5.88568e-39
NZ_CP040505.1|WP_005963277.1|1875497_1875923_-|D-tyrosyl-tRNA(Tyr)-deacylase	gnl|CDD|235383	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional.	7.71718e-81
NZ_CP040505.1|WP_040313612.1|1891050_1891455_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl|CDD|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	2.61701e-40
NZ_CP040505.1|WP_005963243.1|1893169_1893895_-|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl|CDD|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.23934e-45
NZ_CP040505.1|WP_005963267.1|1881187_1882468_-|adenylosuccinate-synthase	gnl|CDD|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
NZ_CP040505.1|WP_005963263.1|1884469_1884694_-|hypothetical-protein	gnl|CDD|227214	COG4877, COG4877, Uncharacterized protein conserved in bacteria [Function unknown].	4.56053e-12
NZ_CP040505.1|WP_005963235.1|1900851_1901829_-|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl|CDD|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	9.47634e-78
NZ_CP040505.1|WP_005963265.1|1882945_1884208_-|ATP-binding-protein	gnl|CDD|379306	pfam13635, DUF4143, Domain of unknown function (DUF4143). This domain is almost always found C-terminal to an ATPase core family.	1.22014e-27
NZ_CP040505.1|WP_005963240.1|1895030_1895720_-|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl|CDD|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	4.83086e-32
NZ_CP040505.1|WP_005963238.1|1895716_1897381_-|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl|CDD|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	6.52563e-114

Protein sequences

>NZ_CP040505.1|WP_131247234.1|1886113_1886578_-|hypothetical-protein
MSPQEVDEARELAISGWQRLQAMPGGVQISGQLAVAVRAGDVEGAVDVLVKNAGYRRMEAVAFVAAFMMVLASGQRVADEAEEADREYRQLISRGLPPINSDEVAMLWTGEAHVACARYQRRSGVSEEDARTMIRLAAKMAAAEGNFPAGTLPH
>NZ_CP040505.1|WP_051057818.1|1884763_1885726_-|SPFH-domain-containing-protein
MNTQAPIVDPEVENDPTSVTARIDIAERPAASISSAAAFPAALLLLAGFAYSIYTFIIGAVMSDAEEPGGIARIIAGILLFLLVLILMTSLAVISPGQTSVRQFFGKYIGTVRRTGLVLVPPLTNGKRVSVKVHNFETNELKVNDSDGNPVNIAAIVVWQVADTARAVFAVEEYEEFIKAQAESALRHVATTHPYDEPGPGETSLRGGTDLVSAELAEEVANRVALAGLEIVEVRISSLAYAPEIAQAMLQRQQAGAVIAAREQIVEGAVTMVDQALKRLEDNDIVELDDERKAQMVSNLLVVLCSDTRTQPVVNAGSLY
>NZ_CP040505.1|WP_005963263.1|1884469_1884694_-|hypothetical-protein
MAEKRERKQVLLRLDPAVHEALAKWAADELRSVNAQIEVVLRRALKDAGREAKAAPMRGRGRPRKDEDGATSQG
>NZ_CP040505.1|WP_005963265.1|1882945_1884208_-|ATP-binding-protein
MKSYIPRLVDAELERGLRASGAVEICGPRACGKTETARHAVNAAGGSQISLDVAGTTMDLLRSAPGQILLGDTPRLIDEWQSLPQIWNLVRHEIDDRGQKGQFILTGSSTPEEDSLRHSGAGRIRRLTMRTMSLYERGLNQGNLSLASLFEGTAEVRGEVDASVTDYISWMASGGWPGFLGLDTQDAADKVAAYIEQIEEHDYPIVAGMRRDPRRFGAFLRAYAGLIAQPATFAAVRRRIGEISQGEPSEQFVPLLHDFACRLFLVEDQPAWSPRLRSKAGLVQTPKRHLADVSLAMSLLGGAPERFESDPETLGILFESLVVHELRVYAQSIRARGVFHLRDGKGRLEIDAIIESRSGDWIGVEAQLSHLSVDEAAANLLRVASHIERSPSALVVVIPSGPVIRRTDGVWVIPLAVLRP
>NZ_CP040505.1|WP_005963267.1|1881187_1882468_-|adenylosuccinate-synthase
MPAVIVLGAQWGDEGKGKATDQLGQNTDYVVKFNGGNNAGHTVVIDGEKYALHLLPAGILSEGVTPIIGNGVVVDIEVMFQEIDEMASRGVDCSRLKVSSNAHIIPSYNRLMDQANERARGKNQIGTTGRGIGPTYADKMNRIGIRIQDLFDPEGLAEKVEAALAPKNEIFAAVGMETLNPEVVTEELLAYADRIRPMMCDVSLEVNEALDRGDTVLFEGGQATMLDIDHGTYPFVTSSNPTAGGALTGAGVGPTRIDRVIGVAKAYTTRVGEGPFPTELDDEVGEALRIKGGEFGVTTGRARRTGWFDAVVVRYATRINGLTDICLTKLDVLSGYPLIPVCVAYEIDGVRAEEMPLDQAGFAKAVPVYEELPGWDEDISGCRTFEELPANAQAYIARLEELSKCRIQSIGVGPGREATIVRYPLI
>NZ_CP040505.1|WP_131247235.1|1880598_1880892_+|hypothetical-protein
MDFIVPLLVYGVPLAAIFGIATWAVHHNNPRKASQRDHYRSAYGLSLERMLAENPVERAEVLQVRDSSKSGEMAAVRYVIKWDPIPLEIAIQFVRAL
>NZ_CP040505.1|WP_005963271.1|1878234_1878726_-|hypothetical-protein
MPNYLVLSHAIAAQALIMSGTAWVALDALNQWEIIIPIAAIIIAAVVWGDQIGSSYRSQSLGALGTGVLAGVIAASAFWGVGMMTSVTPIVLPGVTHVFGRLSAVLLLGGIAGLSVALSVIVLDGLLGDHIMRRPPLGALARGAAKFLVAATPIYAIVRIGGI
>NZ_CP040505.1|WP_005963273.1|1877373_1878024_-|FABP-family-protein
MMVIPADLPASLAPLAWMLGTWKGWGMHSGFDEAEDFAVIEEITGTICGEQMLLTTSIYRGVPKADVQIDPVWDAATGLANIARGDLIFEESMYVSVLPGSGVLPKPGEYVPREFTATSATTNALGVLWAGVGVGPRVQMVSDAIARGAGAQEVEHLGRMYGLVAGELMWTQERTLTSSEAEVEMSGRLMRVAQATTESGETVEGIDTEAEGGLGE
>NZ_CP040505.1|WP_040313999.1|1875922_1877086_-|folate-binding-protein-YgfZ
MTRLPGAVLSCEFTDSPRPAPSRPIALHYSDPSGEQWALEEGRGLVDRADLGIIAVSGTDRHSWLTSITSQIITGMGPGDSKELLVLDPQGHIEHAAAVADDGETTWLICEGHDTEGLAAFLDSMRFALRVEVRICREYTLFASAGSDTDTAQGLHGLLLSWADPWPGTVKGGTEYFQGPHPGLRSRMRLHLVAREKAEEFTRAWFGADPNRRPSGMLAWEAMRIASWRPRLGWETDARSIPAELDWLRTAVHTNKGCYRGQESIARVINLGRPPRRLVFLQLDGSRGDLPDEGTRIEWRGRVVGVITSVARHAEMGPIALALLARNVPADIVFDLDGIAAAQELIVPIDGKSAISPKQRPGAELANPQLRRHDVSPIGGLGALGAR
>NZ_CP040505.1|WP_005963277.1|1875497_1875923_-|D-tyrosyl-tRNA(Tyr)-deacylase
MRAVIQRVARASVDVEGTTVGEITGPGLMVLLGVARDDGCEQVATLARKIAELRILEGERSVMEVDAPILVVSQFTLYGDTRKGRRPSWSKAAPSEQAEPLVNALVEDLRARGLHVETGVFGAMMEVSLVNSGPFTVLVEA
>NZ_CP040505.1|WP_040313612.1|1891050_1891455_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MVVVVLSVVPDSLRGHVTRWLLEISPGVFVGNLNARVRERLWTVIQENIGSGRAIMVFHASNEQRLSFLTLGDPWVPTDFEGLTLMVRPGGYDDENAPEQRSDRGEGHRRPGMSNFEKRRRARRGFPRTDRQTL
>NZ_CP040505.1|WP_005963245.1|1891461_1892415_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTGFPGIRPPDPKDLLRVRDRLTFLYIERCVVHRDSNAITVTDRRGVAHVPAAALSVLMIGPGVRITHSAVSLLAESGATAVWVGENGVRYYAHGVPPSRSSRLLEAQARAVSDPRVRLSVARQMYLKRFHGENVADLSMQQLRGREGARVRRIYRENSSRTGVEWDGRDYDPDNFESGSVVNRCLSAANSAMYGIIHAVVVALGCSPGLGFIHTGNYRSFIYDIADLYKADLSIPVAFDVAAQQLDTGVGEETRRRMRDAIREARILERSVADIKELFAPMMLEDSEQDEELAVADLRLWDDQGSPVLAGVSYEEH
>NZ_CP040505.1|WP_083879462.1|1892411_1893170_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLTRVYLNPYRRGCKFLISSPQRMHAAVLASFPPGSIPSSSEGRVLWRIDRPPKTSRSTNENSPAIALYISSPVAPDPAAIVEQAGYEVNGSVLVKRTDDFLDSLREGQLWSFRVTVNPTFRRAGQEDERGRKKVLAHVTVAQQTQWFLDRAVPNGFEIPLMSEFGGDVSRTLSADGGLVGSDAPFIGLVERRSERFRRNHDERVDVVALQLATFEGKLRVTDPDLLRHALVNGIGRAKGYGAGLLSLARA
>NZ_CP040505.1|WP_005963243.1|1893169_1893895_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSKILILRLAAPMQSWGASSRFTQRGTEAFPTKSGIVGLLAAAEGRRRSDSIEDLAGLRIAARIDQPGELLRDFHTAHRGGVPMPLSDRFYISDGVFVAFVEGEDNLIDALLHAIQRPKFPLFLGRRACPPALPLLLESRSGTMWSAITELPWQAARFHQRKYKTLETVSLRVVADEGIIPGRIDSTRTIQDVPLSFASERREYGIRNIDEARVDLPNPEYVPVVPSQLSAGISHDPMEVI
>NZ_CP040505.1|WP_005963242.1|1893891_1895016_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MARYIDIHILQTLPPSNPNRDDTGAPKTATFGGARRMRISSQAIKRATRLDFEQSLPDGNRGIRTKRIVELLRDVIVEKRADLEDRATQLAELALTEIGFKISDPKGKKTEQQMKEAGFLVFLSAKQVEHVAEAVISVADEEDVKKAFKALKPKSLVDTEHSVDIALFGRMVAEPNSLNVDAACQVAHALGVGQVESEFDYFTAVDDAKRNDDDADEGAGMIGTIEFASATLYRYATINVDLLVENLGSLEVAEQAIEIFIGSFLRSMPTGKLTTFANRTLPDAVLIQVRDDQPINLVGAFESPVRPDRDGFVAPAVEQFVAFERELEEGSGMKPLSSFVSWTTSRAVAFAELGQRIPLAELGTTVVQSIRDAR
>NZ_CP040505.1|WP_005963240.1|1895030_1895720_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MTEESRAQISVPTRDLGSPEDVRNRVLSVIARLKGHNPFAIAGRAQLRSALGKNVGEVPSVWAYTLESGDEHQIGNEATQGELAVHAALTLWAMHQGSHDTSMHMRSQRGATIGASARRVAVSGASDNRCPEEHPIYRRLCAMISAQTFDALVTHARGLVSVMSSADVQIDYGRLASDFYSWQNPRLRSRVVRQWGRDFARTPLSEDGVAGGNVVDLEPIQSESAIPQD
>NZ_CP040505.1|WP_005963238.1|1895716_1897381_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MSELDFNLLDEAWIPVLMVDGTARSMGIREVFHEAGAIRDIACELPTLNIAIERLLLAICYRTLDVPDVESWLDLWDRGVPEEPIQEYLDRWHDRFFLFGGRYPFMQAPDLRTAKDAVSSLDKIIADVPNGEPFFTTRNGEAIRNISAAEAALWLLHAQTFDPAGIRSGAVDDPETKGGKGYPIGPSWTGQLGLVILKGETLDETLVLNLVPFERSGLRGPASTGPKGACSWEVNDVETGLRRNYAENPDPDGYSVSRLLTWHSRRVRLIGSRDGVTGVVLTQGDRLNPQNMHLYEPMSLWRYSMPQSKKARIATYMPRKHDPARAFWRALPGALPFTQKVKGADKGQYDMFLQSDILRFHSSEDLRGVATAYPIRFQMEAIGVTYGSNEAVIDDIYHDALALASVLLEPGEGGLGDIVKQSVGDVESVALVIGNLGANISRASGERGDGAGDAARDRAKERFFSLIDDPFRQWLSSIGPSSDPLAERARWSAELRRIALRTSEELLSRASESAVRGRDVGGSYISVGIAENYFMKKLNEIVPSKRTAQKGMGE
>NZ_CP040505.1|WP_005963237.1|1897380_1900212_-|CRISPR-associated-helicase/endonuclease-Cas3
MWLSLAQHLMDASDVAAVLFDEYAAPEVRSLMASVWDGNEARARSMLRFLAGVHDVGKASVAFSSQVPSLASFLSDFGVDVLHWKDLPDRKSLPHGFLSYFALVDAIEDGGGDRGRATQWASLVAVHHGRYPNPSAMEKARRVLRLVEGRQQQSAWSKGRRELIEWMARRTGIVLNSSEPSELPRLPIAVASAYGALIVMADWLASNEEFFPLFLRDSRAESMSPSAQIQRVRGGMGRAQMPRPLRIEDGAPVDIEASYRRRFSWGEDTHPTKAQLRAVAIAETEDPDLMIVEAPPGSGKTELAFSVAERMVRMRGLQGVMIALPTQATTNAMFERAETWLSNLLGDEPQRLGIHLAHGKNDLNEEFVRLLAKDSAPLEVLDEEEGTSGLFANRWMAARWRSTLSPIVIGTIDQVLLAALKSRHVLMRHLGLLGKVVILDEVHAADAYMEIYLESALAWLGAFGVPVVLLSATLPSARRQALIAAYRRGRTGGEPGEIKELEGDIGYPVLTVLKDKGTNIRSEVVRDEGEEIRKVIRPLEAGNEGLADFIDSRLASGGCAVVIRNTVGDAQRTYDAILQRFGEESTTLLHSRFLACDRAQRDEQMLALFGKGSSRRPKKHVVVATQVIEQSLDVDFDLMITDPAPMDLVLQRIGRLHRHSGRARPAPLQEAECFVLVDQSGDGAWGFSQGTEAVYGKSRVLRMLAILHDHNAEIVLEKAGDFASFTQLAYSNTPVGPSSWQPSLKEASRLDEAETNSVTEKAKVWSFDPARVSTWTGEALLRDFAGEAATGEISDPKTGLAARPAVRDAEDQIPVLIIPVDPEYGGAVTPPPWQEAEGEPTLIDVSVWPSPSMVSRIRTWSVSLPPWQFRETGEKTDNAVDAVACALWDDPCMREWGFLEHPLLRGELVLPMRRVDAHSQRLETTIRGRRVVYTNQRGLEVQG
>NZ_CP040505.1|WP_005963235.1|1900851_1901829_-|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MAGNDGRRGAVRKPGSKKGAKVGTGGHSRRRLEGKGPTPKAEDRTYHPAHKRKVQREAREDQEAAIARARAKSSIKIAPGHELIAGRNPVAEAVRASVPIERVFVLDNVKDDRVEEVIRQAAHLGAPVFEVTRRDLDVATDGAVHQGVAIEVRGYEYAQVNDLIVGSLQQLGTPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVNTTAWKVSAGAAARVPVARATNLVRALEDCKRAGFFVVGLDGGGDAELRDLSLATSPLVVVTGAEGAGLSRLVRETCDQIVSIPISSAVESLNAAVATGIALYEVASLRAGE
>NZ_CP040505.1|WP_131247423.1|1902327_1903494_+|IS1249-family-transposase
MSVDKRPKCPICRAPMNANGKTSSRTPRWRCRNCSFSTVLKRPDVTRRHDLEAFINYATGKTSQAERDGTLTGRSFRQRTSWCWQVPPPLPVMDGVIHDQVFIDGIFLSHSWVILIATDGRTPLNWVTAGRENATAYTQLLSPLPPPGIITTDGAGGALAAIRTLWGPDQPVQRCLVHVHRNNTVDLTHNPHTPAGKALKGLSHSLLRVTTMDEAAHWASLLAAFHTEYAHYLKERTYASQDPEKAAATGKKWWYTHERDRRVYYRLERLLKNKQLFTFLTDPGRPNLASTTNPIESLNAQIRALLRAHAGWNTTRQITAIHWFLAHHQHPINAATVLAEWDKHARQPHTIIPTTHKQQPRPDGPTHYDNAYSPDTGFHTRKGWAGRT

Crispr_ID: NZ_CP040505_33

• CRISPR_ID: NZ_CP040505_33
• CRISPR_location: 1918556-1918644
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers
• Cas_protein_info: cas3,cas8e

Consensus repeat of NZ_CP040505_33

Consensus_repeat	Method
CATCCCACCCTCACGACGGGACGTGAC	CRISPRCasFinder

spacers of NZ_CP040505_33

>33.1|1918583|35|NZ_CP040505|CRISPRCasFinder
TCGCCGACCGCGCCGGATGCCACGAAAAAAACAGA

CRISPR arrays and Neighbor proteins around NZ_CP040505_33

CRISPR arrays

The CRISPR arrays of NZ_CP040505_33

>merge|NZ_CP040505|33|1918556-1918644|CRISPRCasFinder
CATCCCACCCTCACGACGGGACGTGACTCGCCGACCGCGCCGGATGCCACGAAAAAAACAGACATCCCACCCTCACGAGGGGACGTGAC

>NZ_CP040505|33|30|1918556-1918644|CRISPRCasFinder
CATCCCACCCTCACGACGGGACGTGAC	TCGCCGACCGCGCCGGATGCCACGAAAAAAACAGA
CATCCCACCCTCACGAGGGGACGTGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005963204.1|1925378_1925891_-|CarD-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224248
NZ_CP040505.1|WP_005963207.1|1922712_1924077_-|MFS-transporter	unknown	unknown	gnl|CDD|225179
NZ_CP040505.1|WP_005963235.1|1900851_1901829_-|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl|CDD|223640
NZ_CP040505.1|WP_005963213.1|1918717_1920301_-|threonine-synthase	unknown	unknown	gnl|CDD|236418
NZ_CP040505.1|WP_005963224.1|1905829_1906675_+|DUF4132-domain-containing-protein	unknown	unknown	gnl|CDD|379270
NZ_CP040505.1|WP_005963219.1|1911514_1912648_+|AAA-domain-containing-protein	unknown	unknown	gnl|CDD|336785
NZ_CP040505.1|WP_051057853.1|1921818_1922460_+|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl|CDD|379312
NZ_CP040505.1|WP_040313991.1|1903741_1905193_-|cysteine--tRNA-ligase	unknown	unknown	gnl|CDD|234705
NZ_CP040505.1|WP_131247423.1|1902327_1903494_+|IS1249-family-transposase	unknown	unknown	gnl|CDD|307151
NZ_CP040505.1|WP_005963189.1|1929891_1930971_-|ferrochelatase	unknown	unknown	gnl|CDD|234585
NZ_CP040505.1|WP_040313604.1|1926085_1926820_-|phosphoglyceromutase	unknown	unknown	gnl|CDD|184519
NZ_CP040505.1|WP_131247312.1|1912810_1916218_+|VWA-domain-containing-protein	unknown	unknown	gnl|CDD|283431
NZ_CP040505.1|WP_005963187.1|1931338_1931635_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005963199.1|1926887_1927220_-|Lsr2-family-protein	unknown	unknown	gnl|CDD|378714
NZ_CP040505.1|WP_005963237.1|1897380_1900212_-|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl|CDD|182031
NZ_CP040505.1|WP_040313990.1|1920908_1921493_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl|CDD|178851
NZ_CP040505.1|WP_005963221.1|1906755_1911282_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005963215.1|1916214_1918230_+|hypothetical-protein	unknown	unknown	gnl|CDD|236090
NZ_CP040505.1|WP_131247311.1|1924419_1924950_-|hypothetical-protein	unknown	unknown	gnl|CDD|234670
NZ_CP040505.1|WP_005963238.1|1895716_1897381_-|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	pfam09481_cas8e_CAS-I-E	gnl|CDD|378189

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP040505.1|WP_005963237.1|1897380_1900212_-|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	5e-66	217.8	0.0
NZ_CP040505.1|WP_005963238.1|1895716_1897381_-|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	pfam09481_cas8e_CAS-I-E	1.1e-112	372.2	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005963204.1|1925378_1925891_-|CarD-family-transcriptional-regulator	gnl|CDD|224248	COG1329, COG1329, Transcriptional regulators, similar to M. xanthus CarD [Transcription].	5.46798e-58
NZ_CP040505.1|WP_005963207.1|1922712_1924077_-|MFS-transporter	gnl|CDD|225179	COG2270, COG2270, Permeases of the major facilitator superfamily [General function prediction only].	7.3333e-96
NZ_CP040505.1|WP_131247311.1|1924419_1924950_-|hypothetical-protein	gnl|CDD|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	9.99254e-27
NZ_CP040505.1|WP_005963213.1|1918717_1920301_-|threonine-synthase	gnl|CDD|236418	PRK09225, PRK09225, threonine synthase; Validated.	0
NZ_CP040505.1|WP_005963224.1|1905829_1906675_+|DUF4132-domain-containing-protein	gnl|CDD|379270	pfam13569, DUF4132, Domain of unknown function (DUF4132). This domain might be involved in the biosynthesis of the molybdopterin cofactor in E.coli.	7.18226e-25
NZ_CP040505.1|WP_005963219.1|1911514_1912648_+|AAA-domain-containing-protein	gnl|CDD|336785	pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.	1.14007e-44
NZ_CP040505.1|WP_051057853.1|1921818_1922460_+|class-I-SAM-dependent-methyltransferase	gnl|CDD|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	3.20577e-15
NZ_CP040505.1|WP_040313991.1|1903741_1905193_-|cysteine--tRNA-ligase	gnl|CDD|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP040505.1|WP_131247423.1|1902327_1903494_+|IS1249-family-transposase	gnl|CDD|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	1.88455e-06
NZ_CP040505.1|WP_005963189.1|1929891_1930971_-|ferrochelatase	gnl|CDD|234585	PRK00035, hemH, ferrochelatase; Reviewed.	2.55237e-133
NZ_CP040505.1|WP_040313604.1|1926085_1926820_-|phosphoglyceromutase	gnl|CDD|184519	PRK14120, gpmA, phosphoglyceromutase; Provisional.	2.92948e-165
NZ_CP040505.1|WP_131247312.1|1912810_1916218_+|VWA-domain-containing-protein	gnl|CDD|283431	pfam05762, VWA_CoxE, VWA domain containing CoxE-like protein. This family is annotated by SMART as containing a VWA (von Willebrand factor type A) domain. The exact function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon is several bacteria.	8.15847e-34
NZ_CP040505.1|WP_005963199.1|1926887_1927220_-|Lsr2-family-protein	gnl|CDD|378714	pfam11774, Lsr2, Lsr2. Lsr2 is a small, basic DNA-bridging protein present in Mycobacterium and related actinomycetes. It is a functional homolog of the H-NS-like proteins. H-NS proteins play a role in nucleoid organisation and also function as a pleiotropic regulator of gene expression.	1.64959e-43
NZ_CP040505.1|WP_005963237.1|1897380_1900212_-|CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	3.02106e-82
NZ_CP040505.1|WP_040313990.1|1920908_1921493_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl|CDD|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.23832e-72
NZ_CP040505.1|WP_005963235.1|1900851_1901829_-|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl|CDD|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	9.47634e-78
NZ_CP040505.1|WP_005963215.1|1916214_1918230_+|hypothetical-protein	gnl|CDD|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0.000478688
NZ_CP040505.1|WP_005963238.1|1895716_1897381_-|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl|CDD|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	6.52563e-114

Protein sequences

>NZ_CP040505.1|WP_005963215.1|1916214_1918230_+|hypothetical-protein
MTRIAPLLLSSIVDALTPRVRKRVDAYLADGVEVGVQTLFGQSTVRIAKVDVLCDEDEIVCDCLLAPRCAHRAVVALSLELADGTETEEGTEAEEERGAVLDVPAEFAAQSGDTAAESGVGAANENGVGAWAESGPNAGVERGVGAAPESSEALRGSDPRESASPGASAAKTPGTNEAKTPTRGCTKTPDASPAQAPGMEGPTTPGAKAPGTSDTGSTKTPRAGSAKTPSTRPAQAPGASAPVSAAQRDTILLVLADLAQILQLGSTHLGALHRSMLARDLHRLRSAGLVTADRALTAYYQNLSAPPKLRASAFASALVNLHLLSRLGPEEDASALLGQARGAYREVGGLSLVPLFAAPIITASGFAGVEATFVDASGRTWSVARMRPGDAANVESAYRVEPVWRELSAPIRLLSRHRILVSGATARADGRLGAGSKVRASLGAESTGWESVPAPYEIVEGAILGGDRSGLVVDGRFLSLLPAARSLGAGLATELFGAALGTRVRCLVRDEELLGMLVLDGVIYVPDELGGVWWPGLDAVDRSWAGVLPEVDGEGTDSAGAEGALAGGDADEPGGLDAAGADSAGEVSGFAQVRAVLQRWCQRVLDAGPSVLSSPVLERDTAWVRAVGAPFASELLSSLKDATHEGSRRFDGTWEPDSEALARAWLAASQY
>NZ_CP040505.1|WP_131247312.1|1912810_1916218_+|VWA-domain-containing-protein
MLDDFAPDVLAIELPAEADEWLSQLSSAHTIAPVALAFSKGEDLSFYPFADFSPELAALRWAAARGVRVLCIDRPIAAREEKSPPGEGPGTGETPSGETPAGAADHEMELGALREESDPREEAKGSQVPAPASGDSRGRKALEAAARAEDGDSAESWDRLVEARAPSSTPEQIRVAALAHGWAMRVDEAETDEDSLEREQWMRAALAPEISSGTRVAALVGAFHAPALLPLPQDTASCTPVAVNIPLGEHGSSEAATLPARTQHTPVRSCLVAYSFDHLDSRSGYPSGIRDPGWQQLVYESGLDPKRLRAEVASVITSITRALREAGHPAGPAEAAECSRIALDLATLRNLAAPSRRELVEAVTSVLAQGEILGRGRAVADALERVLIGTRTGRVDPSVPKSPLLEAVRAEIEAARLPLEGAQELDLVPERSTLDLKRSILMHRLRAGGVVYGHSEERSTTRGAQALAQTWRVQWTAATEASIELASIRGLTVEQIASTALLTRRVEGAVDIVRLLRESSACACPAPLERALELATRMTASVSFAEAVSFTLALSDVARENIPGASLLDAPLRERAATAADLFGTAAIREIRGIEGSDEPGDAAALAAFITIGAEHPLSLHAALTHLRSAGSPLMQGASAGLLIDEDEAALHIASWLNASTPQARRVLRRRLVGLLIAAGSRFDTAPAALALVDRINAIDDADFVAALPALRGGFDCFDQDSRERLLADLAPNLGRARSLELPAEQVIAITQADTGARKRLSALSLADVSFSPDERWRLILGTQRMGLSPQGRRMASALDELYGRPAADALDARRRNASYGPSQLGVREWETEIDALFGHAEIEEIFGEAATRGRADLLERLSPQSVRPSIELLTTALSLTGSLPEARLAKLRPLVARLVSELSKELAVRLRPALTGLARGRPTRRRTSSLDLDRTLRANLRHVAPIDGRPQVIPVHPVFHSTQAQESDWHLILTVDVSASMSESVVYSALVAAILAQSPCLSVDFLAFNTEVIDFTGRVDDPLALLMEVEVGGGTDIAGALRLARSRLRVPTRTLLVLVSDFDEGGPLDALLDEVGALAASGVTMLGCAALNDSGTGVYNVGVASRVAATGMRVAAVSPLDLARWVGTVIREHS
>NZ_CP040505.1|WP_005963219.1|1911514_1912648_+|AAA-domain-containing-protein
MATSTPPGDSTPGVSEVNTAQQVPPPEMLYADELDLLARQEGPKPPGWRLTPSAVVSFICGNPRLKISRKFVGDISLVERCVITLAGERALLLVGEPGTAKSMLSELLSAAICGTSALTVQGSAGTTEDQLRYGWNYAQLLARGPSVDALVPSPVLAAMSSGRVARIEEITRCLPEVQDSLVSILSERRIAIPELGEHAIHARPGFCLIATANLRDRGVSEMSAALKRRFNFEAVAPICDASAEIALVTEKTKQALSAAGVPAKVDEVVVETLVTAFRDLRSGISQEGWAVEKPSTVLSTAEAVAISGSIALAGAFFPHAKDGVRLIPGQLLGAVRKDDSEDGARLLAYWDSTVKRRANEGRHTWAQLWELRSALED
>NZ_CP040505.1|WP_005963221.1|1906755_1911282_+|hypothetical-protein
MITPARAAELGGIISSDAPGTIPASAHSYAHPALEGRTVVRLTPDALGEVEDITLTSLGFTPGQKTPIGRVRQRAIGFPAWPIIHDPKNARHALNLVGDLQRAAKAAKSKPGNAKLLLDELAKMLGDSAPHFLPTFLEEAARIFLRLDNRVYAAQYFSKAREAERVHSLKVDEDRNSKAFLEFALAGAITAKELTNESKTLCERYEPERALDIFLTLNIDRVKGGMPPYGGLAADLKRLAKAAHADPVEVHARFLRAVLSSPSLSKAPAAFWRGFKKALPVLVAQEPTTMKALLALTPGPVPSDEWIDILASVGLSEDLAAGRVDAREWVERYTRMLQSQWNAGYPRKLSLLVRRMKSLKGQSITLSKRVFGLQPELLDALLSTGAKVEFDVPPGAYSYYNRLSLSDWAETRDRPDLDALAESEHAHLVLGTIGRTASDHLDVILSHSGARTMLGRWAESTLGEHPTSQEVLSEIRRLSPLFTPAGLDAYPRQISALVERLNAGEILADVFRDGFLTEYTWPELEAASAELGTNTTFHEAFPAIGVAADGHIIWVDGDKRIAEASFAPTATDKAEYWHYLLAGEATACAYRKNWEYFLTWSTDPGTSTPIRYYGGSDVPLTLPFNDGRLVGERLVHGGDGGDPFADRALVLREGEHYWRLDDTFREIDPATGQRGRESLPASLAELIEPYLRDGWELEKHTIIWCSVFPTTADSSVSTAHGRHAWLRMSRDEKSLYIDANGHQVHPKERWDRFKGRMARPGGGHWLIKGEELVREDDFAPMFAAADARGGTHLLHKVPQVGWNQFRVRDEAASDKLRHATPSQLEKLLRVVPTADSTEDAEAVDPGRILTDEARAAAASFLGSDCHALVDSVVWATARVKRIVEDGLERTTQEAQPTRSFPEWEASCDALGWANTEWSLTTDRDVLHNMARRLGGAELAVTGVGSAFTHLTTRPIALLFSVTRPLASKEFVGQAAAAFGDLVDEGLYSPSCCVFEVAGIEEGPSSTEPARLLTTPSGPAILIGTGRPFWAYNSNDKTRFFSPSGGVPKSVDGAPISLITRGCGIEAKTIIEAFRVLLDEGAPQWDPAKVARLAEGTGWTRAAASLFLAGLPNIRSAEANFLDKELRTLLGLKVAEAREGREFLSGLGTEELLRLVEAGASDPLRLAHEGIDVEAVIAAWSGNEQVFHLPGALLAAADSAFPWGGARRLRELSQDPNSVDPDVWLWAAAQAETGSRFALWLAQVYEQMKSACRSVRVEWQDYGSGLRTVLGLPAVDENAPSDQVDSLGPWSMTNAPYPTVFYDPNRSKDFTADRRLLDAIDEGEYSLQRIRKRLDVVIGVYDEIADALVNAHPGCACDPLVSAPEVVSAAAKSLGVPEDSARYWLQILALIFPSDKNVESWNSWSKKQRLAAAAPLLEAGLLVEAKRARAGRSLFLPGGWQEASTPHKPMEVWKAPFYDLTDATKVTPRHDVVVPLVPLGRLFEDAWQRYVDGDVPGYTELRTTRYRRR
>NZ_CP040505.1|WP_005963224.1|1905829_1906675_+|DUF4132-domain-containing-protein
MEWIPTGTGHELSIEDGKIVARNDKGKTLKSVPAAAKKTQVWEDLDSTLIFLHQHELEVGEAVERWFLRSLPVPRSLLAAVWPDEAWRSWLTDLVISTPDGEVAGFLRAAHLDALGVVDLDGESARISDEAVLIPHPAALADLDELREFAAELGISQRFDQLFRDVHRADPAKAEALELNTWSGGSFKQLRYAAGRATAAGFKVSGGYSTCPVYEDGALVTARYWIGADSPEAETETGDLHWVRDDHVIRIGEVGPIAYSEGVRMAAHIYAGRVIDDESRP
>NZ_CP040505.1|WP_040313991.1|1903741_1905193_-|cysteine--tRNA-ligase
MTLHLHDSKTARLQPLTPVTPGHVGIYLCGATVQGSPHVGHLRAAVAFDSLVRWLRRSGMEVTYVRNVTDIDDKILNKSAQAQVPWWAWAYRYEREFTQAYETLGVLPPSYEPRATGHIPEQIDLVRRLIERGHAYDDGRGNVYFEVHSQPDYGSLTRQRLADMRTTEDEAQIDAALEAGKRDPRDFALWKSTKPGEPETASWESPWGQGRPGWHLECSAMARRYLGEEFDIHGGGIDLRFPHHENEQAQSHGAGWGFARLWVHNAWVTTKGEKMSKSLGNVLSIGALTKDFPAVAVRWALSTVHHRSAIEWGEETLPAAAAAWSKFSGFVERSIGLAGEACAEEILLPASELPEGFATAMNDDLNVAGALAVIHEHMKAGNTAIDEGDKTLVRREQVLVRSMLDVLGLDPASDQWRGGLGAGGAEGSAEHEALDALVRALIEERAQARADKDWARADALRDRLAQAGIAVADGREGASWRLG
>NZ_CP040505.1|WP_131247423.1|1902327_1903494_+|IS1249-family-transposase
MSVDKRPKCPICRAPMNANGKTSSRTPRWRCRNCSFSTVLKRPDVTRRHDLEAFINYATGKTSQAERDGTLTGRSFRQRTSWCWQVPPPLPVMDGVIHDQVFIDGIFLSHSWVILIATDGRTPLNWVTAGRENATAYTQLLSPLPPPGIITTDGAGGALAAIRTLWGPDQPVQRCLVHVHRNNTVDLTHNPHTPAGKALKGLSHSLLRVTTMDEAAHWASLLAAFHTEYAHYLKERTYASQDPEKAAATGKKWWYTHERDRRVYYRLERLLKNKQLFTFLTDPGRPNLASTTNPIESLNAQIRALLRAHAGWNTTRQITAIHWFLAHHQHPINAATVLAEWDKHARQPHTIIPTTHKQQPRPDGPTHYDNAYSPDTGFHTRKGWAGRT
>NZ_CP040505.1|WP_005963235.1|1900851_1901829_-|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MAGNDGRRGAVRKPGSKKGAKVGTGGHSRRRLEGKGPTPKAEDRTYHPAHKRKVQREAREDQEAAIARARAKSSIKIAPGHELIAGRNPVAEAVRASVPIERVFVLDNVKDDRVEEVIRQAAHLGAPVFEVTRRDLDVATDGAVHQGVAIEVRGYEYAQVNDLIVGSLQQLGTPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVNTTAWKVSAGAAARVPVARATNLVRALEDCKRAGFFVVGLDGGGDAELRDLSLATSPLVVVTGAEGAGLSRLVRETCDQIVSIPISSAVESLNAAVATGIALYEVASLRAGE
>NZ_CP040505.1|WP_005963237.1|1897380_1900212_-|CRISPR-associated-helicase/endonuclease-Cas3
MWLSLAQHLMDASDVAAVLFDEYAAPEVRSLMASVWDGNEARARSMLRFLAGVHDVGKASVAFSSQVPSLASFLSDFGVDVLHWKDLPDRKSLPHGFLSYFALVDAIEDGGGDRGRATQWASLVAVHHGRYPNPSAMEKARRVLRLVEGRQQQSAWSKGRRELIEWMARRTGIVLNSSEPSELPRLPIAVASAYGALIVMADWLASNEEFFPLFLRDSRAESMSPSAQIQRVRGGMGRAQMPRPLRIEDGAPVDIEASYRRRFSWGEDTHPTKAQLRAVAIAETEDPDLMIVEAPPGSGKTELAFSVAERMVRMRGLQGVMIALPTQATTNAMFERAETWLSNLLGDEPQRLGIHLAHGKNDLNEEFVRLLAKDSAPLEVLDEEEGTSGLFANRWMAARWRSTLSPIVIGTIDQVLLAALKSRHVLMRHLGLLGKVVILDEVHAADAYMEIYLESALAWLGAFGVPVVLLSATLPSARRQALIAAYRRGRTGGEPGEIKELEGDIGYPVLTVLKDKGTNIRSEVVRDEGEEIRKVIRPLEAGNEGLADFIDSRLASGGCAVVIRNTVGDAQRTYDAILQRFGEESTTLLHSRFLACDRAQRDEQMLALFGKGSSRRPKKHVVVATQVIEQSLDVDFDLMITDPAPMDLVLQRIGRLHRHSGRARPAPLQEAECFVLVDQSGDGAWGFSQGTEAVYGKSRVLRMLAILHDHNAEIVLEKAGDFASFTQLAYSNTPVGPSSWQPSLKEASRLDEAETNSVTEKAKVWSFDPARVSTWTGEALLRDFAGEAATGEISDPKTGLAARPAVRDAEDQIPVLIIPVDPEYGGAVTPPPWQEAEGEPTLIDVSVWPSPSMVSRIRTWSVSLPPWQFRETGEKTDNAVDAVACALWDDPCMREWGFLEHPLLRGELVLPMRRVDAHSQRLETTIRGRRVVYTNQRGLEVQG
>NZ_CP040505.1|WP_005963238.1|1895716_1897381_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MSELDFNLLDEAWIPVLMVDGTARSMGIREVFHEAGAIRDIACELPTLNIAIERLLLAICYRTLDVPDVESWLDLWDRGVPEEPIQEYLDRWHDRFFLFGGRYPFMQAPDLRTAKDAVSSLDKIIADVPNGEPFFTTRNGEAIRNISAAEAALWLLHAQTFDPAGIRSGAVDDPETKGGKGYPIGPSWTGQLGLVILKGETLDETLVLNLVPFERSGLRGPASTGPKGACSWEVNDVETGLRRNYAENPDPDGYSVSRLLTWHSRRVRLIGSRDGVTGVVLTQGDRLNPQNMHLYEPMSLWRYSMPQSKKARIATYMPRKHDPARAFWRALPGALPFTQKVKGADKGQYDMFLQSDILRFHSSEDLRGVATAYPIRFQMEAIGVTYGSNEAVIDDIYHDALALASVLLEPGEGGLGDIVKQSVGDVESVALVIGNLGANISRASGERGDGAGDAARDRAKERFFSLIDDPFRQWLSSIGPSSDPLAERARWSAELRRIALRTSEELLSRASESAVRGRDVGGSYISVGIAENYFMKKLNEIVPSKRTAQKGMGE
>NZ_CP040505.1|WP_005963213.1|1918717_1920301_-|threonine-synthase
MRYISTRHDATTQARPFSDILLEGLAPDGGLYLPEEYPQLSASDLEELREILQTKGYAALAAKILALFIDDIPVEDLDGIAARAYSTPAFSTSEIVPVTRLESGTWIAHLSEGPTAAFKDMAMQLLGELFEYELGRRGDWLTIVGATSGDTGSSAEYALRGRPGLSVVMLTPAGRMTAFQRAQMFSLMDENIINVAVDGVFDDCQDLVKAVNMDADFKAAWHLGAVNSINWARLLAQVVYYIATWLRVTSARGAQGEGAPRPEDRATQDKRGTQEECSTAAGHAIQQDPSPQGDRVPSDERINVVVPSGNFGNVCAAHIARSMGLPLGALVVATNENDVLDEFFRTGVYRPRSCEQTLETSSPSMDISKASNFERFIFDLLGRDAERVADLFGRALTEEGFFDLSGTEEFARLRETYGFISGSSTHADRLEEIRRTEDEDAYLLDPHTADGMHVARSLAASLEGPLVVMETALPVKFAETILEATSHLPPVPERFEGIEGGQQRVVDLANEVGALKAFIEARVRVDA
>NZ_CP040505.1|WP_040313990.1|1920908_1921493_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MSDSSSPIPFRVGQAIDVHAFAKESEPDKASSTGLESSGTALDTPDEESSRAAKSLWLACLEWPGETPLEGHSDGDVAAHAVCDALLSATGLGEMGTVFGTDRPQWRGASGEQFLREVCRMLSEAGWCIGNVSVQVIGKKPRMAKRLPEACERMSQIIGAPVQVSATTTDGLGFTGRGEGLAASAVALIVRAEA
>NZ_CP040505.1|WP_051057853.1|1921818_1922460_+|class-I-SAM-dependent-methyltransferase
MTGSDSMFAWEKRYASTQRLWSEDVNELLPEFAAPLTPGRALDIGCGEGTDLLYLLERGWQVVGVDFSATAIARFLDGAHRIGAADRATGLVGDARALHIEGLFDLVTIFFVHGNKDGSGVDLAALISEQASRLKPGGIILVNVHTVNPPWHRNGGRTYTAAQILDSLRSTGMLTQDWTIQVAEERWEDVPASKDHEAGKRSNAVVVLRSPDM
>NZ_CP040505.1|WP_005963207.1|1922712_1924077_-|MFS-transporter
MSSTPASSGPAKTKILTRPIIEWALWDWGSAAFNAVATTFVFSVYLTGTDRFAPGGEASTHLSTGLTVAGIIIALLAPITGQRADRRGKGGVWLGWFSALVFLCLLGMFFVAPDSPIGTTGAMWMGIGLLGLGNIFFEFASVNYNAMLNHLTTKENMGRVSGLGWGSGYVGGIVLLLILYLGLIGPNMFGVPTENGMAVRISMVIAAFWFGLSALPVVLRPPKPAVIHEDTGERESLLDSYKLLWGTVKSLKREAPHTLAFLIASAVFRDGLAGVFTFGAILAGTAFGFSSGDVMIFAIAANIVAGLATIAFGALDDRFGPKAVIVASLVFMVASGLGVFFLHSYGKVVFWSLGLVLCVFVGPTQSASRSFLGRIIPKGREGEVFGLYATTGRAVSFLAPLMYGVFLKIGQAFTPAGQDFTYWGILGVILVLLVGLFLTIPVKAQAAHLDHLEG
>NZ_CP040505.1|WP_131247311.1|1924419_1924950_-|hypothetical-protein
MPAIPVTDTLKEVGPRTQAGPREEVGSRTEEGLHKEVGPCEQVGPHTEADLLKEVGSRTEGTARQTQVSGAASLHAPLEVTETSVISVRPVVATPDRSRFASVQTPQGFTWQTLRRAHECAGERANSEKTAATDDAGLVEAMGEPVVVVDGDALALKITTAVDLALAELLVDSSLR
>NZ_CP040505.1|WP_005963204.1|1925378_1925891_-|CarD-family-transcriptional-regulator
MSFEIGQTVVYPHHGAATIEEISTRKIRGEERMYLTLRVNQGDLTIQVPADNVDLVGVRDVVDEDGLEEVLSVLRAPYIEEPTNWSRRYKANQEKIATGDIVKVSEVVRDLTRRDDQKKLSTGEKRMLTKARQILTSELALARNIDKAAAAERLDEVLAEGRVEEEPTEG
>NZ_CP040505.1|WP_040313604.1|1926085_1926820_-|phosphoglyceromutase
MTYTLVLLRHGESEWNKKNLFTGWVDVPLSEKGVEEAKHAGELLRENDVLPDLLFTSLLRRAINTAHYALDAADRLWIPVERSWRLNERHYGALQGKNKKEVRDEYGEEQFMLWRRSFDIAPPAIEAGTEFSQDSDPRYLEEVPASECLKDVIARFMPYWESTLVPAIKTGKIVMIGAHGNSLRALVKYLDDISDEDIIGVNIPTGIPLVYELDEETLKPVKKGGTYLDPEAEAKIAAVANQGK
>NZ_CP040505.1|WP_005963199.1|1926887_1927220_-|Lsr2-family-protein
MKKTQIVLVDDIDGTEAVDTVSFSYEGVNYEIDLNEEHIQEFAGSISKWIEAARRVGGRQAKRGKIGRGRGASASKAGLIREWAQGQGIAVNERGRIPAEIVAAYESAHA
>NZ_CP040505.1|WP_005963189.1|1929891_1930971_-|ferrochelatase
MTNQPSVSSQVSAAETTAASTKEASGKGTDISADTPVLLLTNLGTPKTPTTKDVRRYLREFLSDQRIIEMPRFVWKPILEGIILRVRPAQSAEKYRSVWLEEGSPLLHYTTQQAKLLTDRLGIRVVPAMRYGEPALGDVLDELMAAGHRRIGILSAYPQYSATTIASVNDAVCAWMQENRDHPQIRFSRSFPNDPHYIEALVGAIEDSWSQNGRPDFEGGDRVLLSYHSIPVSMHKAGDPYHSECLATTEAVRERLGLSAQECVATFQSVFGPSEWLKPATINTVEDLAKAGTGRVDVICPGFVSDCLETLEEIDQLNRETFLEAGGSEFHYVPWGNDVDRAIDALEVQARALLSGWTE
>NZ_CP040505.1|WP_005963187.1|1931338_1931635_+|hypothetical-protein
MGPLTPIFFRGAKNEEIPLLARLPSPTPLLHRSRNCPMTPTQNPAPAETQAQVNDLEPKSQRKPKPQRQPKPRRKSKPQRTPTIASRCSSAAAVMPEL

Crispr_ID: NZ_CP040505_34

• CRISPR_ID: NZ_CP040505_34
• CRISPR_location: 1931467-1931547
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP040505_34

Consensus_repeat	Method
CCCAGCGCCAGCCGAAACCCAGGCGCAAGTC	CRISPRCasFinder

spacers of NZ_CP040505_34

>34.1|1931498|19|NZ_CP040505|CRISPRCasFinder
AATGATCTCGAGCCCAAAT

CRISPR arrays and Neighbor proteins around NZ_CP040505_34

CRISPR arrays

The CRISPR arrays of NZ_CP040505_34

>merge|NZ_CP040505|34|1931467-1931547|CRISPRCasFinder
CCCAGCGCCAGCCGAAACCCAGGCGCAAGTCAATGATCTCGAGCCCAAATCTCAACGCAAACCCAAACCCCAGCGCCAGCC

>NZ_CP040505|34|31|1931467-1931547|CRISPRCasFinder
CCCAGCGCCAGCCGAAACCCAGGCGCAAGTC	AATGATCTCGAGCCCAAAT
CTCAACGCAAACCCAAACCCCAGCGCCAGCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_051057817.1|1933527_1934766_-|DNA-polymerase-III-subunit-delta'	unknown	unknown	gnl|CDD|236134
NZ_CP040505.1|WP_005963204.1|1925378_1925891_-|CarD-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224248
NZ_CP040505.1|WP_005963207.1|1922712_1924077_-|MFS-transporter	unknown	unknown	gnl|CDD|225179
NZ_CP040505.1|WP_005963213.1|1918717_1920301_-|threonine-synthase	unknown	unknown	gnl|CDD|236418
NZ_CP040505.1|WP_005963185.1|1931704_1933366_-|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|312032
NZ_CP040505.1|WP_005963199.1|1926887_1927220_-|Lsr2-family-protein	unknown	unknown	gnl|CDD|378714
NZ_CP040505.1|WP_051057853.1|1921818_1922460_+|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl|CDD|379312
NZ_CP040505.1|WP_005963176.1|1941782_1942754_+|DUF808-family-protein	unknown	unknown	gnl|CDD|377542
NZ_CP040505.1|WP_005963170.1|1946225_1946492_-|HPr-family-phosphocarrier-protein	unknown	unknown	gnl|CDD|376329
NZ_CP040505.1|WP_005963189.1|1929891_1930971_-|ferrochelatase	unknown	unknown	gnl|CDD|234585
NZ_CP040505.1|WP_005963172.1|1944537_1946223_-|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl|CDD|224006
NZ_CP040505.1|WP_005963169.1|1946802_1947822_+|LacI-family-transcriptional-regulator	unknown	unknown	gnl|CDD|380514
NZ_CP040505.1|WP_138588782.1|1939729_1940068_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_040313604.1|1926085_1926820_-|phosphoglyceromutase	unknown	unknown	gnl|CDD|184519
NZ_CP040505.1|WP_005963182.1|1936146_1938867_-|type-I-DNA-topoisomerase	unknown	unknown	gnl|CDD|236048
NZ_CP040505.1|WP_005963174.1|1943244_1943868_+|superoxide-dismutase	unknown	unknown	gnl|CDD|223678
NZ_CP040505.1|WP_040313990.1|1920908_1921493_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl|CDD|178851
NZ_CP040505.1|WP_131247310.1|1934732_1935704_-|dTMP-kinase	unknown	unknown	gnl|CDD|234814
NZ_CP040505.1|WP_131247311.1|1924419_1924950_-|hypothetical-protein	unknown	unknown	gnl|CDD|234670
NZ_CP040505.1|WP_005963215.1|1916214_1918230_+|hypothetical-protein	unknown	unknown	gnl|CDD|236090

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_051057817.1|1933527_1934766_-|DNA-polymerase-III-subunit-delta'	gnl|CDD|236134	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated.	1.17833e-162
NZ_CP040505.1|WP_005963204.1|1925378_1925891_-|CarD-family-transcriptional-regulator	gnl|CDD|224248	COG1329, COG1329, Transcriptional regulators, similar to M. xanthus CarD [Transcription].	5.46798e-58
NZ_CP040505.1|WP_005963207.1|1922712_1924077_-|MFS-transporter	gnl|CDD|225179	COG2270, COG2270, Permeases of the major facilitator superfamily [General function prediction only].	7.3333e-96
NZ_CP040505.1|WP_005963213.1|1918717_1920301_-|threonine-synthase	gnl|CDD|236418	PRK09225, PRK09225, threonine synthase; Validated.	0
NZ_CP040505.1|WP_005963185.1|1931704_1933366_-|alpha/beta-hydrolase	gnl|CDD|312032	pfam08386, Abhydrolase_4, TAP-like protein. This is a family of putative bacterial peptidases and hydrolases that bear similarity to a tripeptidyl aminopeptidase isolated from Streptomyces lividans. A member of this family is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterized from Propionibacterium freudenreichii.	5.92494e-24
NZ_CP040505.1|WP_005963199.1|1926887_1927220_-|Lsr2-family-protein	gnl|CDD|378714	pfam11774, Lsr2, Lsr2. Lsr2 is a small, basic DNA-bridging protein present in Mycobacterium and related actinomycetes. It is a functional homolog of the H-NS-like proteins. H-NS proteins play a role in nucleoid organisation and also function as a pleiotropic regulator of gene expression.	1.64959e-43
NZ_CP040505.1|WP_051057853.1|1921818_1922460_+|class-I-SAM-dependent-methyltransferase	gnl|CDD|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	3.20577e-15
NZ_CP040505.1|WP_005963176.1|1941782_1942754_+|DUF808-family-protein	gnl|CDD|377542	pfam05661, DUF808, Protein of unknown function (DUF808). This family consists of several bacterial proteins of unknown function.	1.55405e-125
NZ_CP040505.1|WP_005963170.1|1946225_1946492_-|HPr-family-phosphocarrier-protein	gnl|CDD|376329	pfam00381, PTS-HPr, PTS HPr component phosphorylation site.	2.74235e-23
NZ_CP040505.1|WP_005963189.1|1929891_1930971_-|ferrochelatase	gnl|CDD|234585	PRK00035, hemH, ferrochelatase; Reviewed.	2.55237e-133
NZ_CP040505.1|WP_005963172.1|1944537_1946223_-|phosphoenolpyruvate--protein-phosphotransferase	gnl|CDD|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
NZ_CP040505.1|WP_005963169.1|1946802_1947822_+|LacI-family-transcriptional-regulator	gnl|CDD|380514	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	4.58363e-101
NZ_CP040505.1|WP_040313604.1|1926085_1926820_-|phosphoglyceromutase	gnl|CDD|184519	PRK14120, gpmA, phosphoglyceromutase; Provisional.	2.92948e-165
NZ_CP040505.1|WP_005963182.1|1936146_1938867_-|type-I-DNA-topoisomerase	gnl|CDD|236048	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.	0
NZ_CP040505.1|WP_005963174.1|1943244_1943868_+|superoxide-dismutase	gnl|CDD|223678	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism].	2.42461e-87
NZ_CP040505.1|WP_040313990.1|1920908_1921493_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl|CDD|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.23832e-72
NZ_CP040505.1|WP_131247310.1|1934732_1935704_-|dTMP-kinase	gnl|CDD|234814	PRK00698, tmk, thymidylate kinase; Validated.	7.34973e-98
NZ_CP040505.1|WP_131247311.1|1924419_1924950_-|hypothetical-protein	gnl|CDD|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	9.99254e-27
NZ_CP040505.1|WP_005963215.1|1916214_1918230_+|hypothetical-protein	gnl|CDD|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0.000478688

Protein sequences

>NZ_CP040505.1|WP_005963189.1|1929891_1930971_-|ferrochelatase
MTNQPSVSSQVSAAETTAASTKEASGKGTDISADTPVLLLTNLGTPKTPTTKDVRRYLREFLSDQRIIEMPRFVWKPILEGIILRVRPAQSAEKYRSVWLEEGSPLLHYTTQQAKLLTDRLGIRVVPAMRYGEPALGDVLDELMAAGHRRIGILSAYPQYSATTIASVNDAVCAWMQENRDHPQIRFSRSFPNDPHYIEALVGAIEDSWSQNGRPDFEGGDRVLLSYHSIPVSMHKAGDPYHSECLATTEAVRERLGLSAQECVATFQSVFGPSEWLKPATINTVEDLAKAGTGRVDVICPGFVSDCLETLEEIDQLNRETFLEAGGSEFHYVPWGNDVDRAIDALEVQARALLSGWTE
>NZ_CP040505.1|WP_005963199.1|1926887_1927220_-|Lsr2-family-protein
MKKTQIVLVDDIDGTEAVDTVSFSYEGVNYEIDLNEEHIQEFAGSISKWIEAARRVGGRQAKRGKIGRGRGASASKAGLIREWAQGQGIAVNERGRIPAEIVAAYESAHA
>NZ_CP040505.1|WP_040313604.1|1926085_1926820_-|phosphoglyceromutase
MTYTLVLLRHGESEWNKKNLFTGWVDVPLSEKGVEEAKHAGELLRENDVLPDLLFTSLLRRAINTAHYALDAADRLWIPVERSWRLNERHYGALQGKNKKEVRDEYGEEQFMLWRRSFDIAPPAIEAGTEFSQDSDPRYLEEVPASECLKDVIARFMPYWESTLVPAIKTGKIVMIGAHGNSLRALVKYLDDISDEDIIGVNIPTGIPLVYELDEETLKPVKKGGTYLDPEAEAKIAAVANQGK
>NZ_CP040505.1|WP_005963204.1|1925378_1925891_-|CarD-family-transcriptional-regulator
MSFEIGQTVVYPHHGAATIEEISTRKIRGEERMYLTLRVNQGDLTIQVPADNVDLVGVRDVVDEDGLEEVLSVLRAPYIEEPTNWSRRYKANQEKIATGDIVKVSEVVRDLTRRDDQKKLSTGEKRMLTKARQILTSELALARNIDKAAAAERLDEVLAEGRVEEEPTEG
>NZ_CP040505.1|WP_131247311.1|1924419_1924950_-|hypothetical-protein
MPAIPVTDTLKEVGPRTQAGPREEVGSRTEEGLHKEVGPCEQVGPHTEADLLKEVGSRTEGTARQTQVSGAASLHAPLEVTETSVISVRPVVATPDRSRFASVQTPQGFTWQTLRRAHECAGERANSEKTAATDDAGLVEAMGEPVVVVDGDALALKITTAVDLALAELLVDSSLR
>NZ_CP040505.1|WP_005963207.1|1922712_1924077_-|MFS-transporter
MSSTPASSGPAKTKILTRPIIEWALWDWGSAAFNAVATTFVFSVYLTGTDRFAPGGEASTHLSTGLTVAGIIIALLAPITGQRADRRGKGGVWLGWFSALVFLCLLGMFFVAPDSPIGTTGAMWMGIGLLGLGNIFFEFASVNYNAMLNHLTTKENMGRVSGLGWGSGYVGGIVLLLILYLGLIGPNMFGVPTENGMAVRISMVIAAFWFGLSALPVVLRPPKPAVIHEDTGERESLLDSYKLLWGTVKSLKREAPHTLAFLIASAVFRDGLAGVFTFGAILAGTAFGFSSGDVMIFAIAANIVAGLATIAFGALDDRFGPKAVIVASLVFMVASGLGVFFLHSYGKVVFWSLGLVLCVFVGPTQSASRSFLGRIIPKGREGEVFGLYATTGRAVSFLAPLMYGVFLKIGQAFTPAGQDFTYWGILGVILVLLVGLFLTIPVKAQAAHLDHLEG
>NZ_CP040505.1|WP_051057853.1|1921818_1922460_+|class-I-SAM-dependent-methyltransferase
MTGSDSMFAWEKRYASTQRLWSEDVNELLPEFAAPLTPGRALDIGCGEGTDLLYLLERGWQVVGVDFSATAIARFLDGAHRIGAADRATGLVGDARALHIEGLFDLVTIFFVHGNKDGSGVDLAALISEQASRLKPGGIILVNVHTVNPPWHRNGGRTYTAAQILDSLRSTGMLTQDWTIQVAEERWEDVPASKDHEAGKRSNAVVVLRSPDM
>NZ_CP040505.1|WP_040313990.1|1920908_1921493_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MSDSSSPIPFRVGQAIDVHAFAKESEPDKASSTGLESSGTALDTPDEESSRAAKSLWLACLEWPGETPLEGHSDGDVAAHAVCDALLSATGLGEMGTVFGTDRPQWRGASGEQFLREVCRMLSEAGWCIGNVSVQVIGKKPRMAKRLPEACERMSQIIGAPVQVSATTTDGLGFTGRGEGLAASAVALIVRAEA
>NZ_CP040505.1|WP_005963213.1|1918717_1920301_-|threonine-synthase
MRYISTRHDATTQARPFSDILLEGLAPDGGLYLPEEYPQLSASDLEELREILQTKGYAALAAKILALFIDDIPVEDLDGIAARAYSTPAFSTSEIVPVTRLESGTWIAHLSEGPTAAFKDMAMQLLGELFEYELGRRGDWLTIVGATSGDTGSSAEYALRGRPGLSVVMLTPAGRMTAFQRAQMFSLMDENIINVAVDGVFDDCQDLVKAVNMDADFKAAWHLGAVNSINWARLLAQVVYYIATWLRVTSARGAQGEGAPRPEDRATQDKRGTQEECSTAAGHAIQQDPSPQGDRVPSDERINVVVPSGNFGNVCAAHIARSMGLPLGALVVATNENDVLDEFFRTGVYRPRSCEQTLETSSPSMDISKASNFERFIFDLLGRDAERVADLFGRALTEEGFFDLSGTEEFARLRETYGFISGSSTHADRLEEIRRTEDEDAYLLDPHTADGMHVARSLAASLEGPLVVMETALPVKFAETILEATSHLPPVPERFEGIEGGQQRVVDLANEVGALKAFIEARVRVDA
>NZ_CP040505.1|WP_005963215.1|1916214_1918230_+|hypothetical-protein
MTRIAPLLLSSIVDALTPRVRKRVDAYLADGVEVGVQTLFGQSTVRIAKVDVLCDEDEIVCDCLLAPRCAHRAVVALSLELADGTETEEGTEAEEERGAVLDVPAEFAAQSGDTAAESGVGAANENGVGAWAESGPNAGVERGVGAAPESSEALRGSDPRESASPGASAAKTPGTNEAKTPTRGCTKTPDASPAQAPGMEGPTTPGAKAPGTSDTGSTKTPRAGSAKTPSTRPAQAPGASAPVSAAQRDTILLVLADLAQILQLGSTHLGALHRSMLARDLHRLRSAGLVTADRALTAYYQNLSAPPKLRASAFASALVNLHLLSRLGPEEDASALLGQARGAYREVGGLSLVPLFAAPIITASGFAGVEATFVDASGRTWSVARMRPGDAANVESAYRVEPVWRELSAPIRLLSRHRILVSGATARADGRLGAGSKVRASLGAESTGWESVPAPYEIVEGAILGGDRSGLVVDGRFLSLLPAARSLGAGLATELFGAALGTRVRCLVRDEELLGMLVLDGVIYVPDELGGVWWPGLDAVDRSWAGVLPEVDGEGTDSAGAEGALAGGDADEPGGLDAAGADSAGEVSGFAQVRAVLQRWCQRVLDAGPSVLSSPVLERDTAWVRAVGAPFASELLSSLKDATHEGSRRFDGTWEPDSEALARAWLAASQY
>NZ_CP040505.1|WP_005963185.1|1931704_1933366_-|alpha/beta-hydrolase
MKYSKPALIASVIAVVFAVFMATTILVVTVWSAQSIVNAGGSKPDRSWAESEHYTEPDPVTASSAEDFYAQNIHWGSCRADQITDRGSASKSSLSEYQCARLYAPLDWEEPAGEQITLSLAIHRSGSEGAPALFFNLGGPGGASVNSITYQVEDSLGKDLVQKYDIVALDPRGVGESTPLKCLSDAELDTYNATGSFFGVNSKREEETPQEIVESSTRELTFLADHCEHRSGDLFAHIDTVSAAKDFDMVREVLDQPNFNYLGYSYGTFLGATYAELFPAKTGRMVLDGAIDPSMSVNEVSDLQMRGFEDSIGHWMDICLASKSCPFTGDRSAALKQLKDFLLGLDEEPLPTYDRKRPLTMNLALGAVIGTMYSEDTYPVLTQALSSALKDDDGSQLLYIADILNDREDDGSYSSNGTEALIAINNLDYEAAGTIEEWERDAELLKRELPVFGTWAGYASAGLDTWPTSHAQRQEIHAKGSQPIVVVGTTHDPATPYVMAQRLASQLDAGVLVTYDGWGHTAYSKDAGSCVVGAVEGYLLDGTVPQNGLSCSK
>NZ_CP040505.1|WP_051057817.1|1933527_1934766_-|DNA-polymerase-III-subunit-delta'
MGLRRRGRALVNQAQPVWKSLIGQEVAVAKLSDAARSARRILAAQGTGAERIDADRSAMSHAWLITGPPGSGRSNAAKAFAAALQCVGEEPGCGVCPGCRTTMLETNGDVHFVRTQKTIISVDSARGLVNRAQASPSQGRWRVILIEDADRLNEQAANALLKAIEEPPERTVWLLCAPSSEDMIQTIRSRCRHLVLRIPSVHAVAKLLMQEGIADEATALEAARAAQSHIGRARGLAKDPEARRHRRDIITAPAKVRSVGEAVFAAENLWKTAKADADARTKETDARERAELLRVLGLEESAQSTRIARAQLRQLEEEQKRRSRRALTDELDRALVDLLSIYRDVLMVQLNADQELINSDLAALVHELAQESTPRQTMARVSAIEQARRRLLGNGQAQLVLEAMTVSLRPWA
>NZ_CP040505.1|WP_131247310.1|1934732_1935704_-|dTMP-kinase
MAEGVFITFEGGDGSGKSTQIQRVRDWFESQGRQVSVTREPGGTELGKEIRRLVQNGPEDVDPRSEALLYAADRAYHVATRIRPALARGEVVLADRYIDSSVAYQGAARSLGVDEIRSLSVWATQGLNPELTFLLDLPPEVGARRRTNAPDRLERESMEFHERVRHEYLRLADAEPDRIIVIDAVGTPDEVFSEIRGVLEERYPHSAPSALTGETPCMGEAPCMSDETPCPTEVDGAAAPDTAAAYGPAAKLASGSDAEPESSAAPKPGPVAKLESTPTATSDPTPVAKPASSSSTDSAAPSLLSLLGSQETLWACEEEDVLL
>NZ_CP040505.1|WP_005963182.1|1936146_1938867_-|type-I-DNA-topoisomerase
MGASKLVIVESPAKAATIEGYLGPDYHVTASIGHIRDLPQPKDLPTEMKKGPYGRFAVDVEHGFTPYYAVNPDKKKKVAELRKALKESDELFLATDEDREGEAIAWHLLQVLKPKVPVKRMVFHEITKEAITRALENTRELDTALVDAQETRRVLDRLYGYEVSPLLWRKIRPSLSAGRVQSVATRLVVDRERDRMAHVSASYCSISTRIEAGAESFDARVTHVDGRAVAGGSDFSEKGVLKEKAEKAGVLHLDEAFAASIAQALEASPSSIIESVTQKPYRRRPAAPFTTSTLQQEASRKLHWNASSTMRTAQSLYESGYITYMRTDSTALSSQAIQAARAQAAELYGADSVPEKPRFYGNVSKGAQEAHEAIRPAGDHFRTPAEVSSLLSKQQLALYDLIWKRTLASQMTDALGFTATIRVLTGISVEGERHDVISSASGTVITHPGFRQAYQEGRDKGRYDQEKDSGSEKVLPNVSEGEDADVVEAKPEGHETQPPGRYTEATLVKTMEERGIGRPSTYAATIQTIGDRGYIVHRGQYLVPTWLAFSVTRLLEENLSNLVDYDFTASMETDLDRIAAGEESGEEFLSLFYLGANGEGDADGLKFQVESLGDDIDARAVNSQEVGEGVVVRVGRYGPYLEKADGTRANLPEDVAPDEVDAKKIEELFALAADDGRELGIDPATGHTLIAKNGRFGPYITEILPEEEEPTTNGKGKKKAAAPKPRTASLFKSMDLRTVTLEQALELLSLPRELGVDPASGEVITAQNGRYGPYLKKGSDSRTLSSEEQLLSITLDEALAIYAQPKTRGRGAAKPPLREFDADPVSGKKVVVKDGRFGPYVTDGETNVTVPRAESVEDLTQERAFELLADKRTKGPAPKKATRTTRKTTAKKTASKKTSTKKASTK
>NZ_CP040505.1|WP_138588782.1|1939729_1940068_-|hypothetical-protein
MRRTLDALRLPEDLSGLRLVRADDVTEERHYVPGSADPMILILHQGAGLGRSIQVGTATSAIVGASDGELEVGQIAAAVALLTERDAAEITQEVDEPLRELLRAGMLKIVEQ
>NZ_CP040505.1|WP_005963176.1|1941782_1942754_+|DUF808-family-protein
MSGGLIALLDDIATLAKATASSLDDIAAGATKASSKAVGVVIDDTAVTPQYVAGLDPSRELPIIQKIARASLINKLAIILPLALLLTWLAPWMLPVLLLLGGSFLSFEGAEKLLVKLHLLPEHSHENAPAATSAEELEKGIVSSASRTDLILSAEIILISLANVNADSNTVRIGIMIAVAFFMTFFVYGLVALLVKMDDFGLHLSKRQGPLAALGRGIVTIMPKVFSIIGIVGTVAMLWVGGHIVITSVSDLGLSLLHELVEHAMTAVESFGGAATWTMETALSGVFGLAWGALVAYTWLGISLLIPKRHAPINEDEGADASR
>NZ_CP040505.1|WP_005963174.1|1943244_1943868_+|superoxide-dismutase
MAVYTLPDLPYDYAALEPYISGTIMELHHDKHHANYVGGANAALEKLEAARESGDFAAINLYEKNLAFNLGGHTNHTIFWQNMTPDAQERPEGELAAAIDEYFGSFEKFQGQFAAAALGLQGSGWGVLAWDALSKRLVTFQLTDQQGNIPVATVPLLMLDMWEHAFYLDYQNVKADYVKAWWNVVNWADVAARFERARTQYTGLVLA
>NZ_CP040505.1|WP_005963172.1|1944537_1946223_-|phosphoenolpyruvate--protein-phosphotransferase
MASPHAVLHGIGVSAGTAAAKAAIVRPAPGVDENEAPCTDPVAEGERVRGALAVVSASLKERAKKAPEESAPILKATAQLAADRGLAKAIDKKLKKGLGVTQAVHAAVEEYAEMLRGLGGYMAERATDLYDVRDRAICELRGLPAPGVPTFEEPVVLVARDLAPAETATLDPETVKGIITEVGGPTSHTAILAAQLGIPAIVKVAGILEVNEGDLLALDGGVGEVVVSPTAEEVELLEERSRRRALALAGSSGEGATYDGHRVKLLANIGTVDDAKRAAEVDLEGAGLFRTEFLFLDRAEAPSLEEQTDTYTKVLEAFGERRVVVRTLDAGADKPLSFANLGEEENPALGRRGLRLCQVREDLIDTQLAALAAAHAKTKAELWVMAPMVATLEEAEWFAEKARAAGLPKVGIMIEIPAAAIRADQMLSVVDFASIGTNDLTQYTMAADRMDGELAPLLNAWQPAVLQMIKFACEGGRATGKPVGVCGEAGGDPLLALVLTGLGVASLSMAPSKVRAVRAGLRMHDLATCQQMAAFAVDAPTPEEGRNNVLKLVAPAMQALL
>NZ_CP040505.1|WP_005963170.1|1946225_1946492_-|HPr-family-phosphocarrier-protein
MISRTVVVASSVGLHARPAALLAEAVDDSGVDVTIAFDGEEADAASLLEIMTLGVGHGDEVTLSTDDDNAGAVLDSLVELLSRDLDKE
>NZ_CP040505.1|WP_005963169.1|1946802_1947822_+|LacI-family-transcriptional-regulator
MDRRLEPTLADVAKEAGVSLTTVSRVLNNRGYLSQATKDKVARAIKTLGYRPNQVARALHGKRTYTIGLIVPTVALPFFGEIAVAVENALAESGYRVLICNSLGRSDRERDYLNLLIGNRVDGIISGAHNEDLEEYQSIRMPIVTIDRSLSPRIPNVRCDNEAGGRLATERLLAGGSRRPALLTSRSHGLNLRERGYRITCEAAGIEPIVFEVPFHTAPADRPALMAQCLDGAVGMIDSVFATDDLAAAEVLEWARQRDLLVPEQLRVIGFDGTVAVRRALPTLTTIRQPIEDMAREAVRLLLGRIDAVNSAPLEGGADIPEIGEIVEFPVELLEGSTA

Crispr_ID: NZ_CP040505_35

• CRISPR_ID: NZ_CP040505_35
• CRISPR_location: 2113265-2113362
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP040505_35

Consensus_repeat	Method
TTCCTTCTGCGCCTCCGCTCCCGTCA	CRISPRCasFinder

spacers of NZ_CP040505_35

>35.1|2113291|46|NZ_CP040505|CRISPRCasFinder
ACGGATTCGCTTGCTTCTGTTGATTCACTTGTCTCTGCAGATTCGC

CRISPR arrays and Neighbor proteins around NZ_CP040505_35

CRISPR arrays

The CRISPR arrays of NZ_CP040505_35

>merge|NZ_CP040505|35|2113265-2113362|CRISPRCasFinder
TTCCTTCTGCGCCTCCGCTCCCGTCAACGGATTCGCTTGCTTCTGTTGATTCACTTGTCTCTGCAGATTCGCTTCCTTCTGCGCCTCCGCTCCCCTCA

>NZ_CP040505|35|32|2113265-2113362|CRISPRCasFinder
TTCCTTCTGCGCCTCCGCTCCCGTCA	ACGGATTCGCTTGCTTCTGTTGATTCACTTGTCTCTGCAGATTCGC
TTCCTTCTGCGCCTCCGCTCCCCTCA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_040313585.1|2118040_2119399_-|replicative-DNA-helicase	unknown	unknown	gnl|CDD|273206
NZ_CP040505.1|WP_005962893.1|2103483_2104089_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_040313908.1|2106037_2106790_+|NADPH-dependent-oxidoreductase	unknown	unknown	gnl|CDD|380322
NZ_CP040505.1|WP_005962876.1|2108203_2110276_-|sensor-histidine-kinase	unknown	unknown	gnl|CDD|226654
NZ_CP040505.1|WP_005962879.1|2107736_2108207_-|response-regulator	unknown	unknown	gnl|CDD|381113
NZ_CP040505.1|WP_040313902.1|2116362_2116572_+|cold-shock-protein	unknown	unknown	gnl|CDD|224197
NZ_CP040505.1|WP_040313588.1|2102351_2103221_+|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl|CDD|369792
NZ_CP040505.1|WP_005962865.1|2114399_2115488_+|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl|CDD|223692
NZ_CP040505.1|WP_005962873.1|2110277_2111678_-|DASS-family-sodium-coupled-anion-symporter	unknown	unknown	gnl|CDD|273267
NZ_CP040505.1|WP_131247221.1|2123886_2124933_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_131247224.1|2119707_2121204_+|MATE-family-efflux-transporter	unknown	unknown	gnl|CDD|240541
NZ_CP040505.1|WP_040313587.1|2104238_2104760_+|peptidylprolyl-isomerase	unknown	unknown	gnl|CDD|223725
NZ_CP040505.1|WP_040313584.1|2121741_2122032_+|30S-ribosomal-protein-S6	unknown	unknown	gnl|CDD|179034
NZ_CP040505.1|WP_040313586.1|2104860_2105715_+|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl|CDD|366759
NZ_CP040505.1|WP_005962859.1|2117125_2117344_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962842.1|2122960_2123419_+|50S-ribosomal-protein-L9	unknown	unknown	gnl|CDD|234659
NZ_CP040505.1|WP_005962843.1|2122699_2122942_+|30S-ribosomal-protein-S18	unknown	unknown	gnl|CDD|178997
NZ_CP040505.1|WP_040313589.1|2101428_2101692_+|cell-division-protein-CrgA	unknown	unknown	gnl|CDD|377706
NZ_CP040505.1|WP_005962882.1|2106885_2107527_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962845.1|2122075_2122612_+|single-stranded-DNA-binding-protein	unknown	unknown	gnl|CDD|236092

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_040313585.1|2118040_2119399_-|replicative-DNA-helicase	gnl|CDD|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP040505.1|WP_040313908.1|2106037_2106790_+|NADPH-dependent-oxidoreductase	gnl|CDD|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	4.35927e-91
NZ_CP040505.1|WP_005962876.1|2108203_2110276_-|sensor-histidine-kinase	gnl|CDD|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	1.96776e-28
NZ_CP040505.1|WP_005962879.1|2107736_2108207_-|response-regulator	gnl|CDD|381113	cd17569, REC_HupR-like, phosphoacceptor receiver (REC) domain of hydrogen uptake protein regulator (HupR) and similar domains. This family is composed of mostly uncharacterized response regulators with similarity to the REC domains of response regulator components of two-component systems that regulates hydrogenase activity, including HupR and HoxA. HupR is part of the HupT/HupR system that controls the synthesis of the membrane-bound [NiFe]hydrogenase, HupSL, of the photosynthetic bacterium Rhodobacter capsulatus. It contains an N-terminal REC domain, a central sigma-54 interaction domain that lacks ATPase activity, and a C-terminal DNA-binding domain. Members of this family contain a REC domain and various output domains including the cyclase homology domain (CHD) and the c-di-GMP phosphodiesterase domains, HD-GYP and EAL. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.59157e-22
NZ_CP040505.1|WP_040313902.1|2116362_2116572_+|cold-shock-protein	gnl|CDD|224197	COG1278, CspC, Cold shock proteins [Transcription].	2.63792e-30
NZ_CP040505.1|WP_040313588.1|2102351_2103221_+|Cof-type-HAD-IIB-family-hydrolase	gnl|CDD|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	1.74549e-52
NZ_CP040505.1|WP_005962865.1|2114399_2115488_+|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl|CDD|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	7.51331e-16
NZ_CP040505.1|WP_005962873.1|2110277_2111678_-|DASS-family-sodium-coupled-anion-symporter	gnl|CDD|273267	TIGR00785, Uncharacterized_transporter_HI_0020, anion transporter. The Divalent Anion:Na+ Symporter (DASS) Family (TC 2.A.47) Functionally characterized proteins of the DASS family transport (1) organic di- and tricarboxylates of the Krebs Cycle as well as dicarboxylate amino acid, (2) inorganic sulfate and (3) phosphate. The animal NaDC-1 cotransport 3 Na+ with each dicarboxylate. Protonated tricarboxylates are also cotransported with 3Na+. [Transport and binding proteins, Anions, Transport and binding proteins, Cations and iron carrying compounds].	4.92869e-62
NZ_CP040505.1|WP_131247224.1|2119707_2121204_+|MATE-family-efflux-transporter	gnl|CDD|240541	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	5.49311e-88
NZ_CP040505.1|WP_040313587.1|2104238_2104760_+|peptidylprolyl-isomerase	gnl|CDD|223725	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones].	3.04699e-63
NZ_CP040505.1|WP_040313584.1|2121741_2122032_+|30S-ribosomal-protein-S6	gnl|CDD|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	1.74576e-33
NZ_CP040505.1|WP_040313586.1|2104860_2105715_+|rhomboid-family-intramembrane-serine-protease	gnl|CDD|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	7.45728e-33
NZ_CP040505.1|WP_005962842.1|2122960_2123419_+|50S-ribosomal-protein-L9	gnl|CDD|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	2.52793e-56
NZ_CP040505.1|WP_005962843.1|2122699_2122942_+|30S-ribosomal-protein-S18	gnl|CDD|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	1.29434e-30
NZ_CP040505.1|WP_040313589.1|2101428_2101692_+|cell-division-protein-CrgA	gnl|CDD|377706	pfam06781, CrgA, Cell division protein CrgA. CrgA is a trans-membrane (TM) protein, first described in Streptomyces as being required for sporulation through the coordination of several aspects of reproductive growth. In Mtb (Mycobacterium tuberculosis ) CrgA is a central component of the divisome, and consists of 93 residues with two predicted TM helices (TM1: residues 29-51; and TM2: residues 66-88). CrgA facilitates the recruitment of the proteins essential for peptidoglycan synthesis to the divisome and also stabilizes the divisome. Reduced production of CrgA results in elongated cells and reduced growth rate, and loss of CrgA impairs peptidoglycan synthesis. CrgA has homologs in other actinomycetes.	6.77166e-25
NZ_CP040505.1|WP_005962845.1|2122075_2122612_+|single-stranded-DNA-binding-protein	gnl|CDD|236092	PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional.	2.35649e-78

Protein sequences

>NZ_CP040505.1|WP_005962873.1|2110277_2111678_-|DASS-family-sodium-coupled-anion-symporter
MTTRQKKPHGPSPVKLFGQIGALGAIIIFLFVQLPGLGVEGSRMFGIFIAAILLWVTEAVPLAATATLVIFLEVLFVSDHAILQVAEDAPKYTSFFGALANPVIILFLGGFMVADGAAKYKVDRALSAVLLRPFLGKPRSTVMGVMLITAVMSMFMSNTATTATMFAVMMPVIMGLPEGRARTGIALSIPVAANVGGMGTPVGTPPNAIALGALQSAGISVTFLDWMLAAVPLMLITLAISWGFIAWRYIPKDAVFSIDTSAKFDTSRNAKIFYATALVTILLWMTEALHGVSANIVGFLPVVVLMLTKVMSGDDLRALDWPVLWLVAGGIALGSGVGSTGLDKWLLGSIQWGAIPTIILLLVLALVGWVTSNVISHSASANLLVPMGMGLAATISTPAAEIAIVLALGCSLGMCLPISTPPNAIAYSTGTTPTREMVVVGVIVGIIGVLLLSFVAPLTWGPLGVI
>NZ_CP040505.1|WP_005962876.1|2108203_2110276_-|sensor-histidine-kinase
MNEERGLAPPEDGCEGVWEKTDVRHGGHRVGHSLHILVMGDDSRGLARALTEDMALAFPNLCLDRIDGPEDLIHYDSTLKADDHVILGLVTSEVEDIDTALELVEERPILAPTNWLIVTDETTHSDLARSTTSGRLASLVSVPWTVELLIGQSYSTMVNHLKGEGRTPEEILELIGEAPANAIQGPILEGLDLKEEQVVRLLLEGVERVLGHRPRLVIPTGTELAVQGQPVRAVHLVLAGDVSLHRDGLRGEVLAHHATSGPLIGLVSLARGENAFFTAVTTSTARVVRLTNEQLEIALLREPALAAPLAALAIQSLTRRLMRAEDLHLENALLAADLEAQRTALEKALEDLRATREQLVEKTRFAMLGELSAGIAHELNNPVTALARAAEHLSEDVDRVLAAVASLSQAREAMHRALESSPRPTSEERELVKLLLPEVGGDRRLARRLVLAGVVDPVRARSFAQAGESTVEVLESGARIGSSLRSVLAAAERVIDLTRSLKGYARPDAADFEAVDVSAGIDDVLRLTDYRLRGVEVIREGGPLPPVLAHPSKLQQVWTNLIVNAAEAIEDEHEDLEKRRKAGEEALFARGTAPAQIRILLEEEGTFIRVTIEDNGPGIAPEIVEKIFEPHFTTKAGRVRYGLGMGMSIVHSIVSDHGGRLTVESQPGRTRMIVRLPAMKHEKTPKEETR
>NZ_CP040505.1|WP_005962879.1|2107736_2108207_-|response-regulator
MTLAILSLEDEANVREALERDLDDFWRHVRLEVADDADDAWSAVEDIVADGDELAVVLSDHRLPGKSGVDFLVELVKDPRFSSTRTVLVTGQADQDDTIRALNEAGLDHYIAKPWDPVNLQEVVRHQLTDFVLEAGINPLPYLPVLDGVRVMEAIR
>NZ_CP040505.1|WP_005962882.1|2106885_2107527_+|hypothetical-protein
MPRSPGFPTYVFIERHSSNAAVLHPFPEHDVEAVREALAAAGFEISILGSGDPIRGEGIYFQDEPFGDEILGQLADALTLRGIGAYAYALLEDSLGPGSGSIALFSRVGSIFPREGRRILLTHMWVGEVEGRRTATTWFFGSPEDLEEANILLGSRFDTEPVHDLNGMAAIEVRHEEVASGQTTPVKLMDEIFAILGASGFEGPAFCFDQNAG
>NZ_CP040505.1|WP_040313908.1|2106037_2106790_+|NADPH-dependent-oxidoreductase
MENSTIEAQMGHRTIRAFTDEPLTEDELTTLYEVARHTASSSFLQQTTIIRVTDPVVRERLHAASGQPYVGGTRGELLVFVADQYRNSRIREEGGVDNAPLHRTNLLLTALHDALLAAQNVVVAAESMGLGTCYLGSIHADPRAVIEALGLPELTFPVLGLLVGHPDQEPQFKPRLPLSVIVAENSYPKVDSYSELIADYDEIITDYYDMRDTSKRTESFSTLVRTTIGVAGAHVSPILEVLNEQGFALE
>NZ_CP040505.1|WP_040313586.1|2104860_2105715_+|rhomboid-family-intramembrane-serine-protease
MSVPQYGQRSDPSSAPQCPRHPGVRSVDYCKRCNRPMCVACLVPTEVRALCVDCAGTPTFSRSSATPGVTKTLIGLCAFFALVGFMLPSVERLFLFSPAFAAIQPWRFLTTAFLHSGIVHLFLNMLALYWVGSPLEKIFGHWRFAAIYLLSAIGGSAFVLMWVLVQPSTVYTATVGASGAVFGLFGALFVVQREAGMDTRAVLVLVAANLAYGFIASNVSWQSHLGGLIVGALVAFLLIRQGRAKGGITAKEQESQAMLMTGAIFLGMCAFITLIYKVLFGVLS
>NZ_CP040505.1|WP_040313587.1|2104238_2104760_+|peptidylprolyl-isomerase
MEATLHTNKGDILVELFPNHAPKTVHNFVTLARGEREWVDPNTRQKTSRPLFDGTIFHRVISGFMIQGGDPLGTGTGGPGYQFDDEIHPELTFDSPYVLAMANAGKRMGRGTNGSQFFITVAPTQWLFGKHTIFGKVVDQASKDVVDTIAAVVTGANDRPVEDVVIESVTISE
>NZ_CP040505.1|WP_005962893.1|2103483_2104089_-|hypothetical-protein
MANTPNFDADKLRTEALQLRDAVAVTAGRMAVKAADLAEQGVDWAAPRAQAALETAIEKATPVVEDASERAQAAVERARPALEHARAELVDDYLPRINRAVHEGAEALNTEGALVDRARRATKVSQAALLTPTKALRPKRRFLRAIGWTALAGTVAGVGYVLWKRSQPIEDPWAEEYWADLETDSFVPATEAEEIGDFPKE
>NZ_CP040505.1|WP_040313588.1|2102351_2103221_+|Cof-type-HAD-IIB-family-hydrolase
MTEPLPSDLSAYAGLCELRLVGVDMDGTLLDDQKRFPPKLDELLDELDSRGIVFAPASGRQVWTLLDMFPNRPGMTVIAENGAIVMKDGVEVSSSPLDHETVSRAIDLVRAEVKAGRNAGLLLCGKQFAYIERHDEPFTSQVDPYYHRVLKVSDQHEVVAKMESDAIDDDVIKLAVLDLEEVTPIAEKTLGLFADTHQFAISGLNWADLQLRGVDKGRALRALQEAIGVSPAQTAAFGDFHNDLSMLAQAEWSFAMANAHADVIEAARFVAPSNNEDGVGQVLRTLLNG
>NZ_CP040505.1|WP_040313589.1|2101428_2101692_+|cell-division-protein-CrgA
MAESKKRKKDGREVSDDTEIHSWTEGIPLSPRWWAPAFVTLLLLGLVWLMVYYISSGTYPIPNISWWNMVIGLGIMMVGFLMTLKWR
>NZ_CP040505.1|WP_005962865.1|2114399_2115488_+|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MSCEEPQESPLSRKESRVTREGRSEGKNIGSRFQVDRSEAEAEGTQVAPNRTQAEAEGTQVAPKKTQAGTGGTQVAPNKAEAGTEGGASGGHRPTRARDFTKRPKPKERRRIGFFIPRLLPWSSPLSRVQPEVLILAWTLLTTFVLVWPKWPTLGIVALLLLLTSIFGRIPLSAVPIPPIWFWSGLIGGMIGASIDGGILIFLRLIALSLVLLWGSALLLWTFSTARIAQALRRLISPLRFVGAPVDEWARIMGLALTAMPVLAEQSQAVVDAAKLRMGGEWTRMGLRSSLRLGVDVTTAVLSAASRSARDTGRAMSMRGGLDPLTTEPLRLGLNDGVAAVLSALALAGIIAAHVLVDLGGS
>NZ_CP040505.1|WP_040313902.1|2116362_2116572_+|cold-shock-protein
MTSGVVKWFNDEKGYGFITPSDGSADVFAHFSNIVQESGRRTLFEGEQVEFDITQGPKGLQAENIQRLA
>NZ_CP040505.1|WP_005962859.1|2117125_2117344_+|hypothetical-protein
MNNIVKSEIAVASWQGEANAAGVIIAVVLLAVLGVFAAVNASSTISAVIAALVGLTAVLFAPAAYAIRNEKN
>NZ_CP040505.1|WP_040313585.1|2118040_2119399_-|replicative-DNA-helicase
MVAEDFDRTPPQDIDAEMSVLGSMMLTTDAIVTVTEEIRGSDFYMPNHEIIFDAIVDLFGQNEPADAITVAGYLQREGTLSRVGGAPYLHTLIASVPTAANAGYYARIVRERAIMRRLVTAGTRIVQLGYAEAGGEVEEIVEQAQSEIYAVSSERTARDYVAVGSMTHELLEHLEDIEKSKGKLQGVPTGFKELDDLTQGLRGGQMIIVAARPAMGKSTLALDFCRSASIKHGITSLVFSLEMSQQEIAMRMLAAESGVFLSKMQAGSMNDTDWKRVARTMERVSDAPLYIDDSPNMTITEIRAKCRQLKQQHNLGLVVIDYLQLMTSGRQVESRQQEVSAMSRNLKLLAKDIGVPVVAVAQLNRNSESRNDRKPMMSDLRESGSLEQDADIIMLLHRPDYYDKEDRPGEGDIIVAKHRNGETAVIRTLFQGHLSRFVNYSGREEPHNTRQD
>NZ_CP040505.1|WP_131247224.1|2119707_2121204_+|MATE-family-efflux-transporter
MTDLSTSVYTDCGLKLEATFVDGTDSPSPNSQVKLEASLPAPESTSNTQAKPGLTRKILTLAVPALGALVAEPLFTLIDSAMIGHLGTASLAGLSLASQILQTLTILFIFLAYSTTSLTARALGAKDRRGAIRAGIDASWLAALLGLIVAVLLAALAPALVKLMTTDSSVAHEAVAYLRASAPGLIGMLIGYSTVGTLRGLQDTRTPLLITGIGAILNIGLNAVLMFGLGLGVIGSGLGTSIVQLLMAAVYLSILRREAVSVGAPLRPSGSGIARSALDGAPLIVRGLALRLAGLATIWSASQLGSEALAGYQIVLAIWTLICFVLDALAIAAQSMVGLALGRGKLNELRELLRILTIWGAGAGVVLGIVITVLSPWIPFLFDASSSVSPIARWGLIACCVGMPLGGVVFTLDGVLLGAGDNRYFAIAGIGQLLVFLPVLGLIELWRLEGAGSIEVVAAAWGAYALVYMGARLATNMWRTWWSRSGLLGSMDSSLREG
>NZ_CP040505.1|WP_040313584.1|2121741_2122032_+|30S-ribosomal-protein-S6
MRNYELMVILDPSIDERTVAPTMDKYLAPVSANGGSVDKVDIWGKRRLAYDILKRSEGIYVVINMTTTPDVALELNRRMGLDETILRTKLLRPDAH
>NZ_CP040505.1|WP_005962845.1|2122075_2122612_+|single-stranded-DNA-binding-protein
MAGDTQITIVGNLTADPELRFTPSGQAVVDFTVASTPRQYDSKSGQWRDGNALFMRCSAWNDFAENISETLRKGMRVIVQGNLVQRSYETKDGQNRTVIELRVEEVGPSLRWARAQVSRNERSDQGRGGYQGGNRGGAPAGGSYGGSNAGYGAPAGGTVDDPWRASSQGDAAFGEPPF
>NZ_CP040505.1|WP_005962843.1|2122699_2122942_+|30S-ribosomal-protein-S18
MAKPQLRNKPIKKKANPLKSAKIETIDYKDTALLRKFISDRGKIRARRVTGVSVQEQRRIARAVKNAREMALLPYSSTGR
>NZ_CP040505.1|WP_005962842.1|2122960_2123419_+|50S-ribosomal-protein-L9
MATTKLILTRDVANLGNAGEVVEVKSGYARNYLVPRGFATKWTKGAQKQIDEIAAARRRHEIESIDDARELRDALQAAAPVVISGKVGTSGRLFGAVSGAQIAEAVKAQLDKVIDRRRVMIASPIKSTGDHTVVVNLHPEVTAKLKVRVIAE
>NZ_CP040505.1|WP_131247221.1|2123886_2124933_+|hypothetical-protein
MPLASSLRFMLGSALTLGLLFSGAASAATIDPISPHIDQSCASGSLSEGPCEIPHFAITDPQEEYAVNPGETLTLSGTGCIADFPTKFEAWMLFEEPARRSDLPSPTHVTHDVDTGSWTATFTLPDEPGTIPVSFHFTCSSVESFFEARSSSRLRLYSRVNVLPNSQEEPSTPQTSQEEPPTPETPSDPPAEPRITLTQSDVEIGAPLELSASGFDPDEEVEVWLHSDPIRLGMIRADASGNASGTFVVPDNVPAGSHTVKFIGTTSKKTAQTPITVKNKTTAEKASSSSPAGTDASSNTDNASFSSASGKATKELARTGADSLPVLFAASLMSLVGLGALVRRRVRA

Crispr_ID: NZ_CP040505_36

• CRISPR_ID: NZ_CP040505_36
• CRISPR_location: 2132912-2132996
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP040505_36

Consensus_repeat	Method
GGGCGTGGCGAATCCGACTCGGCG	CRISPRCasFinder

spacers of NZ_CP040505_36

>36.1|2132936|37|NZ_CP040505|CRISPRCasFinder
CAGGAACAGCGTGCTGAGGTGACGGAATGCTCCGAAC

CRISPR arrays and Neighbor proteins around NZ_CP040505_36

CRISPR arrays

The CRISPR arrays of NZ_CP040505_36

>merge|NZ_CP040505|36|2132912-2132996|CRISPRCasFinder
GGGCGTGGCGAATCCGACTCGGCGCAGGAACAGCGTGCTGAGGTGACGGAATGCTCCGAACGGGCGTGGCGAATCCGACTTGGCG

>NZ_CP040505|36|33|2132912-2132996|CRISPRCasFinder
GGGCGTGGCGAATCCGACTCGGCG	CAGGAACAGCGTGCTGAGGTGACGGAATGCTCCGAAC
GGGCGTGGCGAATCCGACTTGGCG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005962805.1|2142130_2143309_+|DUF2974-domain-containing-protein	unknown	unknown	gnl|CDD|371412
NZ_CP040505.1|WP_005962820.1|2135948_2137700_+|hypothetical-protein	unknown	unknown	gnl|CDD|240528
NZ_CP040505.1|WP_040313585.1|2118040_2119399_-|replicative-DNA-helicase	unknown	unknown	gnl|CDD|273206
NZ_CP040505.1|WP_005962845.1|2122075_2122612_+|single-stranded-DNA-binding-protein	unknown	unknown	gnl|CDD|236092
NZ_CP040505.1|WP_040313583.1|2129054_2130518_-|NADP-dependent-phosphogluconate-dehydrogenase	unknown	unknown	gnl|CDD|236453
NZ_CP040505.1|WP_005962817.1|2137692_2139096_+|hypothetical-protein	unknown	unknown	gnl|CDD|237864
NZ_CP040505.1|WP_083879458.1|2144736_2145399_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962814.1|2139171_2140206_+|thioredoxin-disulfide-reductase	unknown	unknown	gnl|CDD|273540
NZ_CP040505.1|WP_005962825.1|2133039_2133576_+|NUDIX-hydrolase	unknown	unknown	gnl|CDD|239645
NZ_CP040505.1|WP_005962842.1|2122960_2123419_+|50S-ribosomal-protein-L9	unknown	unknown	gnl|CDD|234659
NZ_CP040505.1|WP_005962822.1|2133576_2135949_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_131247217.1|2140504_2141080_+|hypothetical-protein	unknown	unknown	gnl|CDD|234966
NZ_CP040505.1|WP_131247221.1|2123886_2124933_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_131247297.1|2126298_2128728_-|penicillin-binding-protein	unknown	unknown	gnl|CDD|223815
NZ_CP040505.1|WP_040313584.1|2121741_2122032_+|30S-ribosomal-protein-S6	unknown	unknown	gnl|CDD|179034
NZ_CP040505.1|WP_083879459.1|2141049_2141799_+|phosphatase-PAP2-family-protein	unknown	unknown	gnl|CDD|239486
NZ_CP040505.1|WP_131247224.1|2119707_2121204_+|MATE-family-efflux-transporter	unknown	unknown	gnl|CDD|240541
NZ_CP040505.1|WP_051057847.1|2131007_2132564_-|CCA-tRNA-nucleotidyltransferase	unknown	unknown	gnl|CDD|131739
NZ_CP040505.1|WP_131247215.1|2143868_2144759_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040505.1|WP_005962843.1|2122699_2122942_+|30S-ribosomal-protein-S18	unknown	unknown	gnl|CDD|178997

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005962805.1|2142130_2143309_+|DUF2974-domain-containing-protein	gnl|CDD|371412	pfam11187, DUF2974, Protein of unknown function (DUF2974). This bacterial family of proteins has no known function.	6.89328e-99
NZ_CP040505.1|WP_005962817.1|2137692_2139096_+|hypothetical-protein	gnl|CDD|237864	PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional.	0.00433117
NZ_CP040505.1|WP_040313585.1|2118040_2119399_-|replicative-DNA-helicase	gnl|CDD|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP040505.1|WP_005962845.1|2122075_2122612_+|single-stranded-DNA-binding-protein	gnl|CDD|236092	PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional.	2.35649e-78
NZ_CP040505.1|WP_040313583.1|2129054_2130518_-|NADP-dependent-phosphogluconate-dehydrogenase	gnl|CDD|236453	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase.	0
NZ_CP040505.1|WP_005962814.1|2139171_2140206_+|thioredoxin-disulfide-reductase	gnl|CDD|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	5.32189e-158
NZ_CP040505.1|WP_005962825.1|2133039_2133576_+|NUDIX-hydrolase	gnl|CDD|239645	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.	9.0005e-51
NZ_CP040505.1|WP_005962842.1|2122960_2123419_+|50S-ribosomal-protein-L9	gnl|CDD|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	2.52793e-56
NZ_CP040505.1|WP_131247217.1|2140504_2141080_+|hypothetical-protein	gnl|CDD|234966	PRK01617, PRK01617, hypothetical protein; Provisional.	2.35358e-27
NZ_CP040505.1|WP_131247224.1|2119707_2121204_+|MATE-family-efflux-transporter	gnl|CDD|240541	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	5.49311e-88
NZ_CP040505.1|WP_131247297.1|2126298_2128728_-|penicillin-binding-protein	gnl|CDD|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	3.3112e-137
NZ_CP040505.1|WP_040313584.1|2121741_2122032_+|30S-ribosomal-protein-S6	gnl|CDD|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	1.74576e-33
NZ_CP040505.1|WP_083879459.1|2141049_2141799_+|phosphatase-PAP2-family-protein	gnl|CDD|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	1.22167e-29
NZ_CP040505.1|WP_005962820.1|2135948_2137700_+|hypothetical-protein	gnl|CDD|240528	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli MurJ (MviN) has been identified as essential for murein biosynthesis. It has been suggested that MurJ functions as the peptidoglycan lipid II flippase which is involved in translocation of lipid-anchored peptidoglycan precursors across the cytoplasmic membrane, though results obtained in Bacillus subtilis seem to indicate that its MurJ homologs are not essential for growth. Some MviN family members (e.g. in Mycobacterium tuberculosis) possess an extended C-terminal region that contains an intracellular pseudo-kinase domain and an extracellular domain resembling carbohydrate-binding proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	7.51399e-77
NZ_CP040505.1|WP_051057847.1|2131007_2132564_-|CCA-tRNA-nucleotidyltransferase	gnl|CDD|131739	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase. [Protein synthesis, tRNA and rRNA base modification].	0
NZ_CP040505.1|WP_005962843.1|2122699_2122942_+|30S-ribosomal-protein-S18	gnl|CDD|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	1.29434e-30

Protein sequences

>NZ_CP040505.1|WP_051057847.1|2131007_2132564_-|CCA-tRNA-nucleotidyltransferase
MANAQRTFGALPEEILDLGRVFEAAGEEIALVGGPVRDAFLGVTPNDFDLTTSAKPERTEELLAQWGAAVWDIGKEFGTIGGRKKDLVVEVTTYRSDSYEVGSRKPEVVFGDTLEGDLTRRDFTVNAMAMRLPGMVLVDPHHGLEDLAKARLRTPVTAEQSFDDDPLRIMRAARFTAQLGIDVDLDVMEAMEVMAPRLQIVSAERIRTELERLIVSPYPRRGLELMVHTGVCQIVLPELSELVSTVDEHRRHKDVYEHTLTVLEQAMDLETDEDGPVPAPDFILRFAAIMHDVGKPMTRRFEPNGTVSFHHHEIVGAKLTRKRMKALKFDKATTEAVSTLVALHLRFHGYGESAWTDSAVRRYVADAGELLERLHRLTRADCTTRNRRKANMLSAAYDDLESRIATLREQEELDAIRPDLDGQEVMEILGLRPSRAVKMALEFLMGMRMEKGPMGKEAAREALLEWWSSEEVREIAREYEEQQAHWEAMVAQKRQKKAAAKAKRAAQAPEHVKNGAQD
>NZ_CP040505.1|WP_040313583.1|2129054_2130518_-|NADP-dependent-phosphogluconate-dehydrogenase
MSAFTPQAASADIGVFGLGVMGANLARNLARNGYATAIFNRTPARTEKLMAAHGDGSEGIFVPASELDDFVASLSRPRVAIIMVKAGPDTDIVMEQLALRMEEGDIIVDCGNSLFSDTIRRERRARELGLHFVGAGVSGGEEGALWGPSIMPGGTIESYTRLGPMFEKISAHYEGEPCCAHVGADGAGHFVKMVHNGIEYADMQVIAEAYDLLRKGLGLSPAQIAEVFSTWNEGELDSYLIEITAEVLRQKDSHSGCALVDVIVDQASQKGTGKWTVQTALDLAVPVTGIGEATFARGASCATPQREAARGLDAAALPLTISEPDTFIDDVRRALFASKLVAYSQGFDEITAGAQVHEWNIDKAAIARIWRAGCIIRAGFLDDIASAYEADPELPLLLAAPPFAQRFEQCLPSLRRIVALAATSGVPIPVFASSLSYFDQIRAERLPAALIQGQRDFFGAHTYQRIDKPGTFHTLWAEEGRPEEQWD
>NZ_CP040505.1|WP_131247297.1|2126298_2128728_-|penicillin-binding-protein
MGSDPSRSLPPKPSNVRRSIINGGQAAHSSALPDGAPELSLPPLPPESFGASRGSASASASSAKAAGRTAKKAPTSAKKKRGLGKKIGLGFVFTFLVGLISALAAFLYMYTSLAVPAASDLALEQKSTLYYSDGSTEMGSLGDINREIIDPSTLPDYVGKAVVASEDRTFYKNSGVDFKGIFRALFTNVVTGSRQGGSTLTQQYVERYYVGETTSSYRGKAEEAVLAIKINREQSKDEILGNYLNTIYFGRGSYGIEAASQAYFGHPASELSLSEAAMLSGIIPAPSAWDPAEDPDKAKDRWARVLNLMVEDGWISQSEADAATFPETIDPLQVESETFAGPNGYLIEQARSELIASGAIDETQIANGGLKIVTTIDRAKQDAAVAAAESMKQVEGWNPATMHVALSSIDPNTGEIVAEYAGSDYLERQQNAVTQDIAMAGSTFKPFALLANARAGGSVNDTYSGRSPQRFDGLSELVENDGGYSFGNVDLIKATSYSINTSYVALNKDIGPAATMQAAIDAGIPEETLGLDRTLLNVLGYASPHNIDLATAYSTIANGGERVNAHIIRSVTGPRGNVIYTAPTDKNRVFSVEEVSSIMPALEAVTKGDGTASSVSQDLRGFTTAGKTGTAQEQRAAQFVAFVPGLVSAVSMYGSDEDGNSAPLPNIGGLDQFHGGDWPVDVWTQYMQTAVEGMPTGGFDWYVKTNRNSKSRNDSQDDAQSAGSAGESSGQRSSEQGSDSGRPQEGQQPSQGSNQGSQNPGQNDPNNPGGNPEPGHEEHGGHDGHDDGADNPGHNEGGGNGGGGAAVEP
>NZ_CP040505.1|WP_131247221.1|2123886_2124933_+|hypothetical-protein
MPLASSLRFMLGSALTLGLLFSGAASAATIDPISPHIDQSCASGSLSEGPCEIPHFAITDPQEEYAVNPGETLTLSGTGCIADFPTKFEAWMLFEEPARRSDLPSPTHVTHDVDTGSWTATFTLPDEPGTIPVSFHFTCSSVESFFEARSSSRLRLYSRVNVLPNSQEEPSTPQTSQEEPPTPETPSDPPAEPRITLTQSDVEIGAPLELSASGFDPDEEVEVWLHSDPIRLGMIRADASGNASGTFVVPDNVPAGSHTVKFIGTTSKKTAQTPITVKNKTTAEKASSSSPAGTDASSNTDNASFSSASGKATKELARTGADSLPVLFAASLMSLVGLGALVRRRVRA
>NZ_CP040505.1|WP_005962842.1|2122960_2123419_+|50S-ribosomal-protein-L9
MATTKLILTRDVANLGNAGEVVEVKSGYARNYLVPRGFATKWTKGAQKQIDEIAAARRRHEIESIDDARELRDALQAAAPVVISGKVGTSGRLFGAVSGAQIAEAVKAQLDKVIDRRRVMIASPIKSTGDHTVVVNLHPEVTAKLKVRVIAE
>NZ_CP040505.1|WP_005962843.1|2122699_2122942_+|30S-ribosomal-protein-S18
MAKPQLRNKPIKKKANPLKSAKIETIDYKDTALLRKFISDRGKIRARRVTGVSVQEQRRIARAVKNAREMALLPYSSTGR
>NZ_CP040505.1|WP_005962845.1|2122075_2122612_+|single-stranded-DNA-binding-protein
MAGDTQITIVGNLTADPELRFTPSGQAVVDFTVASTPRQYDSKSGQWRDGNALFMRCSAWNDFAENISETLRKGMRVIVQGNLVQRSYETKDGQNRTVIELRVEEVGPSLRWARAQVSRNERSDQGRGGYQGGNRGGAPAGGSYGGSNAGYGAPAGGTVDDPWRASSQGDAAFGEPPF
>NZ_CP040505.1|WP_040313584.1|2121741_2122032_+|30S-ribosomal-protein-S6
MRNYELMVILDPSIDERTVAPTMDKYLAPVSANGGSVDKVDIWGKRRLAYDILKRSEGIYVVINMTTTPDVALELNRRMGLDETILRTKLLRPDAH
>NZ_CP040505.1|WP_131247224.1|2119707_2121204_+|MATE-family-efflux-transporter
MTDLSTSVYTDCGLKLEATFVDGTDSPSPNSQVKLEASLPAPESTSNTQAKPGLTRKILTLAVPALGALVAEPLFTLIDSAMIGHLGTASLAGLSLASQILQTLTILFIFLAYSTTSLTARALGAKDRRGAIRAGIDASWLAALLGLIVAVLLAALAPALVKLMTTDSSVAHEAVAYLRASAPGLIGMLIGYSTVGTLRGLQDTRTPLLITGIGAILNIGLNAVLMFGLGLGVIGSGLGTSIVQLLMAAVYLSILRREAVSVGAPLRPSGSGIARSALDGAPLIVRGLALRLAGLATIWSASQLGSEALAGYQIVLAIWTLICFVLDALAIAAQSMVGLALGRGKLNELRELLRILTIWGAGAGVVLGIVITVLSPWIPFLFDASSSVSPIARWGLIACCVGMPLGGVVFTLDGVLLGAGDNRYFAIAGIGQLLVFLPVLGLIELWRLEGAGSIEVVAAAWGAYALVYMGARLATNMWRTWWSRSGLLGSMDSSLREG
>NZ_CP040505.1|WP_040313585.1|2118040_2119399_-|replicative-DNA-helicase
MVAEDFDRTPPQDIDAEMSVLGSMMLTTDAIVTVTEEIRGSDFYMPNHEIIFDAIVDLFGQNEPADAITVAGYLQREGTLSRVGGAPYLHTLIASVPTAANAGYYARIVRERAIMRRLVTAGTRIVQLGYAEAGGEVEEIVEQAQSEIYAVSSERTARDYVAVGSMTHELLEHLEDIEKSKGKLQGVPTGFKELDDLTQGLRGGQMIIVAARPAMGKSTLALDFCRSASIKHGITSLVFSLEMSQQEIAMRMLAAESGVFLSKMQAGSMNDTDWKRVARTMERVSDAPLYIDDSPNMTITEIRAKCRQLKQQHNLGLVVIDYLQLMTSGRQVESRQQEVSAMSRNLKLLAKDIGVPVVAVAQLNRNSESRNDRKPMMSDLRESGSLEQDADIIMLLHRPDYYDKEDRPGEGDIIVAKHRNGETAVIRTLFQGHLSRFVNYSGREEPHNTRQD
>NZ_CP040505.1|WP_005962825.1|2133039_2133576_+|NUDIX-hydrolase
MPARPTNFRQGVPSPPRRRPSSHASHSHSPHLPVSSETSAGGIVVDVVDGIPYAALIARRNRAGRIEWCLPKGHLEAGETPEQAALREVAEETGIHGRIIRHLASIDYWFSGADHRVHKVVHHYLMGYESGLITVEHDPDHEAEEAAWIPLKDSSHRLAYPNERRIVAIALDLLYRGL
>NZ_CP040505.1|WP_005962822.1|2133576_2135949_+|hypothetical-protein
MRRARPALITVLISMSLLIISVFAPAPALADEEVSLPGVSDPQSRPSLFAKASSSHGIEVSINSLSPRVMKNNEDLVISGALRNTSGRTLTTPAILVSMSTTPPSSVMDLEEELDVDAQIGSTISATNLEMNLEADASHRFELRISAENLPFDDESAWGPRALTVEVFSDGASGRDATIALWDSGADFAPSRLSALIPWTSVNTEGEEEERRAALAIASIPGATLAMDAALLPSLPQKDEEITEQKTREKVKTDEAFLRSLLTPGREIVALPRGDADPGTVTLAGNSELSTRLTESIESFPASIAELRKLSAKNSDDEASPEGSQSSQSGAQSSSSSDSSESQGGNVNANGQGNGVHNDKQMPPASPSQDSQDTEDEDAAPASIIRHVAWPSAYTFGTWQLEAAKNGVSIAPLGRLEPDEDLDFTSLALAEVDTTTGEISMRGASEQSARVLIPNVSLSQILDWQTTNTADELDAEQALQAITAIIAHDRPSSSRTVFLTSDRSTAPNADLAVRVRALFDSPWVTGISFSDIAESEPTDVERMIVEPGALSWEGATAVSTLSDALISAYSFANATSDPKEALAEIEGEILPVISARFSPDEQLTAASQFSARVSGLRSRVATEPAGAVNLINKSADFPVRVRNDLPLDVTVKVTLLPSDARLRIAHSSEVTLLAGAVSTVTVPVEAIGSGDVEVTYRITTPDGSVLEDSRKVLVRLRAGWEDAITISAAAAFALLFIFGLVRTLRQRLDKRNEESTASPGSPQATEEHDPLEADSTPDGDSNTIDQQMGS
>NZ_CP040505.1|WP_005962820.1|2135948_2137700_+|hypothetical-protein
MTSETAPERSPSAKRSSILRASAIMASGTMVSRILGFVRSIMLLAAIGAAGGGVSAAFQTANTLPNTVFNLLASGVFDAVLVPQIVGALKRKHDGETYVNRLLTLAGTLLFIVTILSMVAAPLLVVITAAGYDSEIRTLAILFALLCLPQLFFYGLYNLLGELLNARRVFGPYMWAPVVNNLVGIAGLGAFLAIWGSSEDRIEVADFTSAQFWLLGGSATLGVIAQALILLVPMKRAGIRFTPDFHFRGTRFGSTSKVAGWTFATLGVSQVGVLSTNNLAALADAYAKTHDGVFAGISAYATAFMIFMLPQSLITVSLTTAIFTRMAEAVADGDDRGVAAQYTMGVRTITSLTLLAAAILIAGSVPMTQMVLPSYSNQEIIAGYAWILAALMPGVASTGMVLMSQRVFFAYEDVKPVFLMGIGPTIIQVIVGWGMYFMTGATWWVVGAALGETACRLVQGVIAVAWVSKRNAFVDKASLLRSYSSFFASALIAGLLAFGALWAVGVHTIVESTSARISIATGKMLLVTLIASFGYLIALRFIAPGESARTIAPLLARFKVPNGVRILLAAPLQTSPRKVEDNG
>NZ_CP040505.1|WP_005962817.1|2137692_2139096_+|hypothetical-protein
MADDHRNDIGGFMDEDAMHSAGEGSCPEEPLPSFEQVLHSLEDEVKESSSPVHEGIEEAASPASKKEAWASTVVSSASAWTSKMREKIVSAKDSLRSSQLDKPAEDLPLPPPPPDSSLPPMPPAPEDGGAEIQGANSQAVAADGDPLSHPDTAPAHPTTAPPHPASAPAGGDEENASSGATTKGTGIPAPIAQEPVQEEKFEEPMVFETESGSKDPSKGQSSKRHNTTPTLISGALEETSAIPTIAGASGGSSKIPGQGHLIDPTKPTLIFAAVLTILAAFWSFTTAFKPVNSIDFAQSLADAQSAAHGAGDGSEEDGHSAEGLAPKISSVSVLSWSDDQGDHPEQAVAMIDGDSSTSWHSRWFENNQFLDESAVTLVVKLERTATVSSVTLEMDPSTSGGQLVVRNVTDPSNPRNGTQLTTSALSPSTEIKLPQPVETSMLALSFRSMPTSVDGNEWAWVSELSVQ
>NZ_CP040505.1|WP_005962814.1|2139171_2140206_+|thioredoxin-disulfide-reductase
MSFNLVPGLVTAPVVEPSEEASLPAPRPSSELPEGAKVHDVIIVGSGPAGYTAAIYTARAGLNPLVLAGAISAGGALMNTTEVENFPGFPEGVQGPELMDKMREQAEKFGAEIRYEDVTAVNLSGDVKVLALDDELLYARSVILATGSEYRHMNVEGEDRLSGRGVSYCATCDGFFFKDKVLAVIGGGDSAMEEASFLTNFASKVIVVHRRDALRASKSMADRAMANPKIEFEWNAVVDEVLGDEAVRGLRLRSTVDESMREIGVDGVFVAIGHLPRTGFLAEDVALDEAGYITVEEPSTRTSVEGVFACGDAVDHSYRQAITAAGSGCRAALDAERWLAALND
>NZ_CP040505.1|WP_131247217.1|2140504_2141080_+|hypothetical-protein
MTTLPSPRDPCPCCSGASFGRCCAPILAGEAAPSALALMRSRYSAYVLGDENHLLRSWHPKTRPTPPFCDPKIEWLGLQIVNVDGGGEEDSEGIVEFIASWRSPAESADSSQASQDSRALQGVAGAVSSASGAAFSPAESDSSASAKGSSPSDTQSRFDGVSASFAVESMRERSRFLRRAGRWVYLDGDIR
>NZ_CP040505.1|WP_083879459.1|2141049_2141799_+|phosphatase-PAP2-family-protein
MGLPRWRYPMKGTDEQCPNSAEAFAVPASTSTPRFFLWGILMLASVPLFGLVVRLPQVAHLDRSILDALIAMRTPALTQVMLVVTNVFAPVVAVSWTIVLGGVIRVFSGSWREGLIIPAAMVCSSAITALIKEFIESIRPAFPERLVVEGSYSFPSGHATAVAAACAAGVLLMLHHLANRIPSDEDGSFPRLPARIIKGFVIAGAITLIVLIAFTRLYLGAHWFSDVVAGALVGTASSLIVAELLLGST
>NZ_CP040505.1|WP_005962805.1|2142130_2143309_+|DUF2974-domain-containing-protein
MAANEDIVDYVERSLTPIAAEDFTPVDSLILSWASYFRILPDLPEAATERGVEVRDLLRAECFPRFFWTVWDPEKCKRLLFAMAASPRFRSIRQCFCVDDVDDAEQKQFAACAYVLGPDLLYVAFRGTDRTLVGWKEDFNMTFAAPVPAQECAADYLATLASRTDAKLLVGGHSKGGNLAIYAAARNAELLGDRLLRVYSHDGPGFVPEILAEPGFRAIEERVDRTVPQSSIVGMFLDQSYAYTVVKSTNLGPLQHDPFSWVVEGKDFARANGLSFDARRIDTILSSWLLDHSPEQRELLVDAIYSIITLPEVETVTDLVESWQQSIPAVRDRIAALDPEVRAAILGMFKSLATSGLRGSGRKKEQRAHEGLAIARRQGREEKSHSHASNES
>NZ_CP040505.1|WP_131247215.1|2143868_2144759_-|hypothetical-protein
METRSPGRLRRIVISSLISVVLLLGPEPALGADNTIVEESLQISTSTSGDTIDYTGTYSFSDFAVPSPAPDAVPVVEGPVFSVGDGIEVGVSSADEWNRALEECLAHAANGPILLQQCRIILGLEHPQTSETPDPDPTTNTAPSVESLSPRQIINYAHAQHTINGAGLAWQPKTNALVGLPTLVHVTSPTQNTTLSLFGQAITIALEASHFSYDFGDGSPTLETTDPSAPYPVQTLNHVYTQTSPGRIITLTTTWNATITYPSGRSAYLANALTSTETSTPITILRAKISLVPSDK
>NZ_CP040505.1|WP_083879458.1|2144736_2145399_-|hypothetical-protein
MTRSSHAARVLAFVLTLSGLVMLSGCSVFSPSGAQSGSAAQSAEVVMSGDYILNEDGTLRKPHVTPSVPTMSELAFQYNETGAEQAARHFIDLINYSWASGDTTALDEFSEERCTYCQTISERVHAVYDNGGWTHGVKFTITQVEGNRPVNTNSPETAQFTDSYILSLLLQRSKADRYTPPTLEHVPAGTGHLFVIAHWDGSEWKITGAEGEDYGDTQSR

Crispr_ID: NZ_CP040505_37

• CRISPR_ID: NZ_CP040505_37
• CRISPR_location: 2220717-2220833
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP040505_37

Consensus_repeat	Method
CGGAGCTGAGACGAGTGGACTTGAGAA	CRISPRCasFinder

spacers of NZ_CP040505_37

>37.1|2220744|63|NZ_CP040505|CRISPRCasFinder
GAGTGGACTTGAGAAGGCGCGAGCGGCGAGGGGCCGAGTCGAGCCGGGCCGGGTTGAGGTGAC

CRISPR arrays and Neighbor proteins around NZ_CP040505_37

CRISPR arrays

The CRISPR arrays of NZ_CP040505_37

>merge|NZ_CP040505|37|2220717-2220833|CRISPRCasFinder
GGGAGCGGAGCCGAGCGGAGCTGAGACGAGTGGACTTGAGAAGGCGCGAGCGGCGAGGGGCCGAGTCGAGCCGGGCCGGGTTGAGGTGACCGGAGCCGAGACGAGTGGACTTGAGAA

>NZ_CP040505|37|34|2220717-2220833|CRISPRCasFinder
GGGAGCGGAGCCGAGCGGAGCTGAGAC	GAGTGGACTTGAGAAGGCGCGAGCGGCGAGGGGCCGAGTCGAGCCGGGCCGGGTTGAGGTGAC
CGGAGCCGAGACGAGTGGACTTGAGAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040505.1|WP_005962612.1|2227600_2228875_+|serine--tRNA-ligase	unknown	unknown	gnl|CDD|235461
NZ_CP040505.1|WP_005962641.1|2208880_2210299_+|amino-acid-permease	unknown	unknown	gnl|CDD|236830
NZ_CP040505.1|WP_005962642.1|2208284_2208758_+|hypothetical-protein	unknown	unknown	gnl|CDD|176907
NZ_CP040505.1|WP_005962622.1|2223156_2224221_+|prephenate-dehydratase	unknown	unknown	gnl|CDD|237013
NZ_CP040505.1|WP_005962605.1|2228871_2229798_+|HAD-family-phosphatase	unknown	unknown	gnl|CDD|223635
NZ_CP040505.1|WP_131247211.1|2214907_2215735_+|hypothetical-protein	unknown	unknown	gnl|CDD|235825
NZ_CP040505.1|WP_040313866.1|2204297_2204768_+|DUF2249-domain-containing-protein	unknown	unknown	gnl|CDD|370777
NZ_CP040505.1|WP_005962632.1|2215878_2216706_+|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl|CDD|369777
NZ_CP040505.1|WP_005962614.1|2226841_2227426_+|PIN-domain-containing-protein	unknown	unknown	gnl|CDD|379205
NZ_CP040505.1|WP_005962638.1|2210926_2211538_+|ABC-superfamily-ATP-binding-cassette-transporter-membrane-protein	unknown	unknown	gnl|CDD|227065
NZ_CP040505.1|WP_005962644.1|2205066_2206542_-|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-beta	unknown	unknown	gnl|CDD|376743
NZ_CP040505.1|WP_005962654.1|2203531_2203996_+|RidA-family-protein	unknown	unknown	gnl|CDD|100006
NZ_CP040505.1|WP_005962643.1|2206548_2208096_-|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-alpha	unknown	unknown	gnl|CDD|236507
NZ_CP040505.1|WP_131247291.1|2224817_2226062_-|diacylglycerol-kinase	unknown	unknown	gnl|CDD|224513
NZ_CP040505.1|WP_131247209.1|2216784_2219442_-|TIGR00374-family-protein	unknown	unknown	gnl|CDD|377103
NZ_CP040505.1|WP_005962616.1|2226355_2226838_+|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl|CDD|378935

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040505.1|WP_005962612.1|2227600_2228875_+|serine--tRNA-ligase	gnl|CDD|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP040505.1|WP_005962641.1|2208880_2210299_+|amino-acid-permease	gnl|CDD|236830	PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional.	0
NZ_CP040505.1|WP_005962642.1|2208284_2208758_+|hypothetical-protein	gnl|CDD|176907	cd08898, SRPBCC_CalC_Aha1-like_5, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	7.61264e-09
NZ_CP040505.1|WP_005962622.1|2223156_2224221_+|prephenate-dehydratase	gnl|CDD|237013	PRK11898, PRK11898, prephenate dehydratase; Provisional.	4.98056e-108
NZ_CP040505.1|WP_005962605.1|2228871_2229798_+|HAD-family-phosphatase	gnl|CDD|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	6.67261e-45
NZ_CP040505.1|WP_131247211.1|2214907_2215735_+|hypothetical-protein	gnl|CDD|235825	PRK06547, PRK06547, hypothetical protein; Provisional.	2.68337e-35
NZ_CP040505.1|WP_040313866.1|2204297_2204768_+|DUF2249-domain-containing-protein	gnl|CDD|370777	pfam10006, DUF2249, Uncharacterized conserved protein (DUF2249). Members of this family of hypothetical bacterial proteins have no known function.	8.06883e-12
NZ_CP040505.1|WP_005962632.1|2215878_2216706_+|class-I-SAM-dependent-methyltransferase	gnl|CDD|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	2.87076e-17
NZ_CP040505.1|WP_005962614.1|2226841_2227426_+|PIN-domain-containing-protein	gnl|CDD|379205	pfam13470, PIN_3, PIN domain. Members of this family of bacterial domains are predicted to be RNases (from similarities to 5'-exonucleases).	7.11742e-11
NZ_CP040505.1|WP_005962638.1|2210926_2211538_+|ABC-superfamily-ATP-binding-cassette-transporter-membrane-protein	gnl|CDD|227065	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism].	5.27837e-49
NZ_CP040505.1|WP_005962644.1|2205066_2206542_-|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-beta	gnl|CDD|376743	pfam02233, PNTB, NAD(P) transhydrogenase beta subunit. This family corresponds to the beta subunit of NADP transhydrogenase in prokaryotes, and either the protein N- or C terminal in eukaryotes. The domain is often found in conjunction with pfam01262. Pyridine nucleotide transhydrogenase catalyzes the reduction of NAD+ to NADPH. A complete loss of activity occurs upon mutation of Gly314 in E. coli.	0
NZ_CP040505.1|WP_005962654.1|2203531_2203996_+|RidA-family-protein	gnl|CDD|100006	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	4.52349e-55
NZ_CP040505.1|WP_005962643.1|2206548_2208096_-|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-alpha	gnl|CDD|236507	PRK09424, pntA, Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha.	0
NZ_CP040505.1|WP_131247291.1|2224817_2226062_-|diacylglycerol-kinase	gnl|CDD|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	4.07617e-32
NZ_CP040505.1|WP_131247209.1|2216784_2219442_-|TIGR00374-family-protein	gnl|CDD|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	1.0782e-25
NZ_CP040505.1|WP_005962616.1|2226355_2226838_+|helix-turn-helix-domain-containing-protein	gnl|CDD|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	7.17387e-12

Protein sequences

>NZ_CP040505.1|WP_131247209.1|2216784_2219442_-|TIGR00374-family-protein
MDSGEMGTTPETQDTPPASANTPETPELPHTHHAPSPPQNPEAPADCEAPAPSTRRIVREVRVADRPTPRQRRRTDLLDVVLSILGIAATWAIGVFANATTQGVTEDVLHFRFIREILLLPITLIEGGVVLVAPIAVVIALARRRRLIAILQALVTGLVAALLGWAALYATSLLPPEMTAPLRVAKAVALQSDSTSTAIGINLVLVVLCALFTVAGEMQNMKTVRWSWIGLWVIVFLGVMRSSMTLPSAFLSVFLGRAVGSAARWVFGFEDRRASAKDIVRALLDIGVKPLSVIRSDLDTSLEPLESATLGEDERGRLHLLDRELEAGEYAVTRRPDSDGNRHYQALTEDGSTVEAVVLDPGREILGTLVDVWNNLRLRGISRWISLSLKATVERATLTALCARNAGVRTPEVVGIALAGDSFVCVSKALPPTVPLAQLPSEAIPDSVLDDAWRQLQAAHSHGITHRDLDENSIVLDESGALWIVDWERGEVATTELNRRIDIAQMLVVLSQAATPERALASARRILDERSLTTAAPLLQTAVMPASIRSTLRRGDFLENLRGLVLGPEEAEGVELTNVQRFAPRTVIMVTVLFTALVVVLGSLNFEDIAVAVTQADPMWMAISFGLACLTWVGGAIPLMALSPVKLRFRDAVSAQVAASIATIVAPAGVGPAVVNLRLLKKKRVNTVVAATTVTLQQLLQLFIMLSFLLLVMVLSGNSLSVQLPYATILAVVVLVIVVIGIALSVPRFRQWIWAKIKPTWTQVFPRLIWIVGQPKRLAAILGGNIIMNIGFIGAFWAALTAMGGSMDFLPLALTYLASNSLGSVIPSPGGIGPVEAALTAGLQVAGVSLSIGLPTAVLYRLVTFYGRIPFGWVAMKWMEHKDLL
>NZ_CP040505.1|WP_005962632.1|2215878_2216706_+|class-I-SAM-dependent-methyltransferase
MESTNPFEVEAPRYGAVRPAYPSPVLDALLNEAEASLGHRARFVADIGAGTGKMTQLLARRGLSVVAVEPSKAMRQHMREDLFQEGFILLDEGTASAPSTMRQNQGSRGDSETIAVRAASAEATGLADGTLDLVVFAQSWHWVDPVRAAVEAARILSPGGVLAAVWNQMDVSIPWVHRLTRIMRSGDVHRPEDRPDFGGAFSRPELKLVTWEEAMTPEQILELGTTRSSYLKQDEAGRRRMQANLRWYLHEHLGRPNGSRILLPYWTLVWTAHRL
>NZ_CP040505.1|WP_131247211.1|2214907_2215735_+|hypothetical-protein
MQTGHNLLQGNDVQTGHNRRASHSLGEEQDPDRTQEGGDERPRPATPIILIDGLSGAGKSTLAQALARSLASSLSGDFASHGPVEPVRVLALDSLYEGWHGLEAGSTIASRIVKDLAEARPARYRPWDWENESRGEELIIEAGAPLIIEGCGALTRESRRYAAIALWVEAAGGEKERYRRAIGRDGEMFRAWWETWAEQDLGRLAGPRPGGNTTQLVARADTDPRAHADLRADLQQRRTRMEADPRAHADLRAVGISSAKAAADPRAHADLLVIT
>NZ_CP040505.1|WP_005962638.1|2210926_2211538_+|ABC-superfamily-ATP-binding-cassette-transporter-membrane-protein
MGTTTSTSAPRLNWRVVDMVTAAVLGVACGLIFLVWNQIGGLGYSVLDALTPGIGGLVLGIWLLGGTLGGLIIRKPGAAILVEVIAASVSAALGSQWGIGTLYSGIAQGLGAELIFLIFMYRRYNASIAALSGLGAGVAAWVLELFTAGNLAMGPAFLITYLICCILSGLVLGGLVAWLLVKALAATGALDRFAAGREARARV
>NZ_CP040505.1|WP_005962641.1|2208880_2210299_+|amino-acid-permease
MTAKDTAAVSGTQDLQRTLQNRHVQLIAIGGAIGTGLFMGSGKTIATAGPSVLFVYIIIGAVLFLFMRAMGELLLSDSRYTTFADIARDLIGPWAGFVTGWTYWMCWVVTGVADMVAITGYIRFWWPTTPAWIPIVIMTALLFTLNAMTVKAFGETEFWFALVKIIAILALVFVGIGMVLMGTIDEAGTAAAASNLWSHGGFFPKGVMGFLGGFQIALFAFVGIELVGTTVAETADPVKTLPKAINSIPIRIMLFYVAALAAIMMVTPWDQVDPERSPFVTMFSMTGLGAAATIVNLVVLTSAASSANSGIYSTSRMLFGLANRGDAPKVFSQLSKRHVPRNALFLSCVFLLSAIILMASGDSISAAFTLVTSMSATLFMGVWVVIVVSYLIYLKKRPHLHEASTFKAPGGAASAWLVLGFMAIMVVVLGLFPDTRAGLVPSLVWIGAVTVAALVHRHRMLKRAEMGQLEDF
>NZ_CP040505.1|WP_005962642.1|2208284_2208758_+|hypothetical-protein
MSFFDDDTAQPEEDFDRIEVDMTIKASVEDVWGIVAEPGWWVNDGPVGDHEVTRDEHGYYRVNDPEAGEWLVEKGDEDPMDIVSFRWYPLASDELPEDASTSIEISLSEEGSGIAVHVEESGFSAIAEDDASARSICEDELAMWEVALAAVKAHLEA
>NZ_CP040505.1|WP_005962643.1|2206548_2208096_-|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-alpha
MRIAVPREREGQPLVAAAPQTVELLIRLGYEVLVERGAGLRASFPDSLYEDAGASLVDAHSVWASDVVIAVDTPNEEQLAAMRPGATLIARLAPQQTPGLAESLAPLGITALAMDAVPRISRAQAMDVLSSQANIAGYRAVVEAANRFGRVFTGQVTAAGKMPPARVYVIGAGVAGLAAIGTANSMGALVSATDVRPEVAEQVESMGASFVPLPTSQGKSEDGYAKALSAEEAAAANALYAEQAAKSDIVITTANIPGRTAPILLDEDAIAGMAPGSIIVDMAAVNGGNCALTVPGEVVTTANSVTIIGYVDLAGHLPTQASGLYGRNIANLLELMTPGRDGELVVDLDDEIVRGIAVSVEGSIMWPPPPIRVSAAPAKVASGPSEQELAEEAARRAAKEKRAKRTGLIGLILAIAVFIALILVTPAAATGHYIVLILAVILGFYVISNVTPALHTPLMSVTNAISGIILIGAISQIGDPHPLIAGTSFVAIVLASVNIFGGFAVTHRMLAMFRK
>NZ_CP040505.1|WP_005962644.1|2205066_2206542_-|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-beta
MHNLENLPLDLSALNQPVTLAYIAASILFILACSGLSRHESAVKGNIAGMVGMAFACAAAIVLVLAGEPAHGVLVTAVLIALAIGLGGAIGIYRALHVEMTGMPQLIAIFNGLVGLAAVLVGYNSYLHPDVSSASLGSFHYGEVFLSVFVGAVTFTGSIVAGLKLQGRIPGRPILLPARNWLNLVALIVCLVLAVLFVEHGDFSLAAWACLVLMTVIALTLGIHLVIAIGGGDMPVVVSIMNSYSGWASAFTGFLVDNDLLIITGAIVGSSGAYLSYLMCEAMNRSFLNVLLGGFGTDASTAHVHGGEEEGEIREVDTSTVADLLLGSKRVVITPGYGMAVAQAQYPVAALVEDLEARGITVTFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEVNDDFGEVDVVLVIGANDTVNPAAGEPGSPIAGMPVLKVWDAKRVIVFKRSMATGYAGVQNPLFFRENTSMLFGDAKDSVEAIDRAVETVAPLRG
>NZ_CP040505.1|WP_040313866.1|2204297_2204768_+|DUF2249-domain-containing-protein
MADTMPEAAPTTTHQIFTLVDARTKVENLKTSGGCGCGGHGGSRGGCGCGGHGHGGRRTQSAAQKRPAAQGLPEGSGVAEASGVEELDIHALPKVVRHALVFHAMDILPIGENIRILAPHAPQALFEHLQNSESHYRVETLEEGPLSWRYRITRLS
>NZ_CP040505.1|WP_005962654.1|2203531_2203996_+|RidA-family-protein
MTLPSEKLAELGLELPPVATPVAAYVPAVLDRGVIRTSGQIPVVEGEPVCIGAVGEDGADPEDAKDAARVCALNALAAAAALAGGVDRLAGVVKVVGFVASRPDFYAQASVINGASELFGEIFGSAHARSAVGVAALPLNVSVEVEAEFALVED
>NZ_CP040505.1|WP_005962622.1|2223156_2224221_+|prephenate-dehydratase
MEAASTPLSSRETAPPSAPTNIPGPAPKGERMRIGFLGPFGTFTEQAVRQIAPAGAELVPMTSAPHALAALRRGEVDRAVAPIENSIEGGVNATLDSLAHGDPLVIVAEMVVPVVFQLVVRPGTRPEDVHKIGTHPHAWAQCRNWVEQTFPGAIHVPTTSTAAGAQLLANGDANFDAALCSAVSVDTYEVEPLFRDVADNPGAVTRFVLVAPPGNLPAPTGADKTTIQVALPVNESGALLTLLEQFAVRGVDLSRIESRPSGDALGDYTFSIDIVGHVVEERVQAALVGLHRYSPEVRFMGSYPRVDGRRSVVLPGTRDEDFQKGRAWVADLLHGGDGVHIDSSTPAPSWPLLG
>NZ_CP040505.1|WP_131247291.1|2224817_2226062_-|diacylglycerol-kinase
MIRLLLAQYARRRVRREAMLTPAPAMDPECGCTRPWVIVNPSKHADLNAFKAQVEKTAAEMGVSQIQWCETSVEDPGTGQALRAVALGASLVIAAGGDGTVRAVAAGLAGMGVRMGVIPVGTGNLLARNLELPIDDVPAAVRVALGNEHRLVDCGWLRVDGVEEPSSLPAEGMLVRAARTCLRVDEGIELPEPESLPSTNEYSFVVISGLGFDGETMAKTDSELKKRIGWVAYVIAALGAMTTARTGMRVILRRPRPSDDPVGDAPAAPSSSGAVAASAILEGEELSDAPEQEMAWIESKSLMFANCGDLPYVTLAPGARLDDGLLDVIAVDTQAGLLGWADLSWKILFQRLGLKTFNLANSTGQIHFRQAEGVSVRAHTPQTVQVDGDPVGTATTVHVRIDQGVLDVSVPKVL
>NZ_CP040505.1|WP_005962616.1|2226355_2226838_+|helix-turn-helix-domain-containing-protein
MPTHASTYLPEELVTQRFAKMVEALEEEPGEACLLVGGKRIELTKEMADILTAVARAMERGLAVSVVPQNTRMTTQEAADFLGMSRSTLVRMLEAGEIPFEKVRRHRRLLLSDVLEYRERQRRCANEALADMVADGQAMGAYDIDPAEARRALARIRAGE
>NZ_CP040505.1|WP_005962614.1|2226841_2227426_+|PIN-domain-containing-protein
MAFSALLDACVLVPSTLRDLLLELGTTNAYRPLWSERIEDEVTRTILRLSEKRGRDAQESREYVKRLTKQMNAALPDARIADWEEFEHQVPQGPDPNDRHVVAAAIAGRADVIVTFNINDFPESFVPRELDVLHPDEFLLDLLDLNPRVVQDSVKVIVTRSGRKGPKWGFGDLLERLEREEVSRFAAEMRQLLT
>NZ_CP040505.1|WP_005962612.1|2227600_2228875_+|serine--tRNA-ligase
MIDIRALRENPEPARVSQRARGGDVELVDRILEADALRRTSLQEFESLRASQKEISKSVGKASKEERPAILAKAKELAEQVKVLEARANEADAEADRLARLLPNLVLDGVPVGGEEDFVVLRHEGPAIRDFAAEGFEPADHLAIGEGLDAIDTKRGAKVSGARFYYLKGIGARLELALMTMALDQALAAGFVPMMTPTLVTPQVMGGTGFLNEHSEEIYYLPADDLYLTGTSEVALAGYHSDEILDLSAGPKRYLGWSTCYRREAGSAGKDTRGIIRVHQFNKAEMFSYCRPEEAAEEHERFLAWEEEMLRKVELPYRVIDTAAGDLGTSAARKFDCEAWLPTQSRYMEVTSTSNCTTFQARRLGVRERREDGMFPVATLNGTLATTRWLVAILENHQLADGSLRVPEALRPYLGGLEVLEPVK
>NZ_CP040505.1|WP_005962605.1|2228871_2229798_+|HAD-family-phosphatase
MSGTEPILNLVSPPPSGEEPIPFETLVEAARLALPADMPRDPTKILVAVDLDGTVLLPSGPSPRVREMMAEADRAGLQTVVATGRSFEATAPVLHQLGDPQGWTICSNGAVSVQFDARQGVVSSRIRTFDPTDLIDLVLEGIPDALIGLEVSDCFLLSGGFPPGEFIETHRVHPVEELRGKETIKLVIRAPEMDRDDFQDLVDELGISERYECSVGWTSWADVLPLGVTKASGLHELAETLGIGRAGTVAIGDGTNDVPMIRWANFGVVMGGASQIIKAEGDHVTGAVENDGAAAVIRALLDHCGVAR

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP040505_25	25.11|1048256|36|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1048256-1048291	36	NZ_CP040505.1	1369495-1369530	1	0.972

1. spacer 25.11|1048256|36|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to position: 1369495-1369530, mismatch: 1, identity: 0.972

gcgggatccttggtgaggtcgttctcctcaccgagg	CRISPR spacer
gcgggatccttggtgaggtcgttctcctcgccgagg	Protospacer
*****************************.******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040505_32	32.5|1887372|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1887372-1887404	33	LC473083	Cutibacterium acnes TP-CU389 plasmid pTZC1 DNA, complete sequence	11665-11697	1	0.97
NZ_CP040505_32	32.60|1890728|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1890728-1890760	33	LC473083	Cutibacterium acnes TP-CU389 plasmid pTZC1 DNA, complete sequence	8854-8886	2	0.939
NZ_CP040505_25	25.3|1047679|30|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1047679-1047708	30	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	149545-149574	6	0.8
NZ_CP040505_25	25.3|1047679|30|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1047679-1047708	30	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	153410-153439	6	0.8
NZ_CP040505_25	25.3|1047679|30|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1047679-1047708	30	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	153411-153440	6	0.8
NZ_CP040505_32	32.32|1889020|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889020-1889052	33	NC_007960	Nitrobacter hamburgensis X14 plasmid 2, complete sequence	153194-153226	6	0.818
NZ_CP040505_32	32.45|1889813|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889813-1889845	33	NC_015951	Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, complete sequence	6416-6448	6	0.818
NZ_CP040505_32	32.45|1889813|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889813-1889845	33	NZ_CP024426	Paracoccus yeei strain TT13 plasmid pTT13-4, complete sequence	26974-27006	6	0.818
NZ_CP040505_32	32.45|1889813|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889813-1889845	33	NZ_CP020445	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed5, complete sequence	139469-139501	6	0.818
NZ_CP040505_32	32.45|1889813|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889813-1889845	33	NZ_CP044079	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence	153477-153509	6	0.818
NZ_CP040505_32	32.45|1889813|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889813-1889845	33	NZ_CP031079	Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence	266581-266613	6	0.818
NZ_CP040505_32	32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889996-1890028	33	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1059025-1059057	6	0.818
NZ_CP040505_32	32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889996-1890028	33	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	754099-754131	6	0.818
NZ_CP040505_32	32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889996-1890028	33	MN234216	Streptomyces phage Gilgamesh, complete genome	110132-110164	6	0.818
NZ_CP040505_32	32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889996-1890028	33	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1780034-1780066	6	0.818
NZ_CP040505_32	32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889996-1890028	33	CP042595	Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence	257359-257391	6	0.818
NZ_CP040505_32	32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889996-1890028	33	CP058906	Micromonospora phage pMLP1, complete sequence	5436-5468	6	0.818
NZ_CP040505_5	5.2|98409|32|NZ_CP040505|CRISPRCasFinder	98409-98440	32	NZ_KX786187	Enterobacter cloacae strain N14-0444 plasmid pIMI-6, complete sequence	82328-82359	7	0.781
NZ_CP040505_5	5.2|98409|32|NZ_CP040505|CRISPRCasFinder	98409-98440	32	NZ_KT225520	Raoultella ornithinolytica strain RJ46C plasmid pRJ46C, complete sequence	21999-22030	7	0.781
NZ_CP040505_5	5.4|98532|33|NZ_CP040505|CRISPRCasFinder	98532-98564	33	NZ_CP011520	Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-3, complete sequence	24814-24846	7	0.788
NZ_CP040505_5	5.4|98532|33|NZ_CP040505|CRISPRCasFinder	98532-98564	33	NZ_CP011808	Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-1, complete sequence	61870-61902	7	0.788
NZ_CP040505_21	21.1|653076|30|NZ_CP040505|CRISPRCasFinder	653076-653105	30	NC_007491	Rhodococcus erythropolis PR4 plasmid pREL1, complete sequence	14117-14146	7	0.767
NZ_CP040505_21	21.1|653076|30|NZ_CP040505|CRISPRCasFinder	653076-653105	30	NZ_CP050125	Rhodococcus erythropolis strain KB1 plasmid plas1, complete sequence	226877-226906	7	0.767
NZ_CP040505_21	21.1|653076|30|NZ_CP040505|CRISPRCasFinder	653076-653105	30	NZ_CP034156	Rhodococcus sp. NJ-530 plasmid unnamed4, complete sequence	231314-231343	7	0.767
NZ_CP040505_22	22.3|712861|34|NZ_CP040505|CRT	712861-712894	34	MN693337	Marine virus AFVG_25M253, complete genome	3582-3615	7	0.794
NZ_CP040505_24	24.1|972343|30|NZ_CP040505|CRISPRCasFinder	972343-972372	30	NZ_CP021355	Rhodococcus sp. S2-17 plasmid pRB98, complete sequence	85166-85195	7	0.767
NZ_CP040505_25	25.16|1048620|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1048620-1048652	33	NZ_AP012556	Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence	165786-165818	7	0.788
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	MN329674	Mycobacterium phage JoieB, complete genome	25794-25823	7	0.767
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	MH727562	Mycobacterium phage VasuNzinga, complete genome	24977-25006	7	0.767
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	MN428056	Mycobacterium phage Pringar, complete genome	25403-25432	7	0.767
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	MK061407	Mycobacterium phage Beelzebub, complete genome	26069-26098	7	0.767
NZ_CP040505_28	28.2|1286188|29|NZ_CP040505|PILER-CR	1286188-1286216	29	NZ_CP016617	Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence	404352-404380	7	0.759
NZ_CP040505_32	32.4|1887311|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1887311-1887343	33	NC_017324	Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence	518020-518052	7	0.788
NZ_CP040505_32	32.4|1887311|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1887311-1887343	33	NC_015597	Sinorhizobium meliloti AK83 plasmid pSINME01, complete sequence	215793-215825	7	0.788
NZ_CP040505_32	32.4|1887311|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1887311-1887343	33	NZ_CP021794	Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence	433871-433903	7	0.788
NZ_CP040505_32	32.4|1887311|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1887311-1887343	33	MN813676	Arthrobacter phage Adolin, complete genome	12040-12072	7	0.788
NZ_CP040505_32	32.4|1887311|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1887311-1887343	33	MH834610	Arthrobacter phage DrManhattan, complete genome	12030-12062	7	0.788
NZ_CP040505_32	32.5|1887372|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1887372-1887404	33	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	853223-853255	7	0.788
NZ_CP040505_32	32.27|1888715|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1888715-1888747	33	NC_031944	Synechococcus phage S-WAM1 isolate 0810PA09, complete genome	70823-70855	7	0.788
NZ_CP040505_32	32.29|1888837|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1888837-1888869	33	KT870145	Roseobacter phage DSS3P8, complete genome	125903-125935	7	0.788
NZ_CP040505_32	32.29|1888837|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1888837-1888869	33	MH015255	Ruegeria phage vB_RpoS-V10, complete genome	127425-127457	7	0.788
NZ_CP040505_32	32.30|1888898|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1888898-1888930	33	NZ_CP033315	Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence	431129-431161	7	0.788
NZ_CP040505_32	32.30|1888898|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1888898-1888930	33	NZ_CP032342	Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence	267039-267071	7	0.788
NZ_CP040505_32	32.30|1888898|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1888898-1888930	33	NZ_CP033321	Azospirillum brasilense strain Cd plasmid p3, complete sequence	104268-104300	7	0.788
NZ_CP040505_32	32.32|1889020|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889020-1889052	33	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	1797884-1797916	7	0.788
NZ_CP040505_32	32.45|1889813|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889813-1889845	33	NC_011311	Aliivibrio salmonicida LFI1238 plasmid pVSAL840, complete sequence	11733-11765	7	0.788
NZ_CP040505_32	32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889996-1890028	33	NZ_CP048642	Streptomyces aureoverticillatus strain HN6 plasmid unnamed, complete sequence	9480-9512	7	0.788
NZ_CP040505_32	32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889996-1890028	33	NZ_CP022568	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence	112441-112473	7	0.788
NZ_CP040505_32	32.52|1890240|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1890240-1890272	33	NZ_CP029357	Azospirillum sp. CFH 70021 plasmid unnamed2	613402-613434	7	0.788
NZ_CP040505_32	32.55|1890423|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1890423-1890455	33	NZ_CP041042	Paracoccus sp. AK26 plasmid pAK4, complete sequence	63731-63763	7	0.788
NZ_CP040505_32	32.60|1890728|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1890728-1890760	33	NZ_CP013556	Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence	1049134-1049166	7	0.788
NZ_CP040505_32	32.60|1890728|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1890728-1890760	33	NZ_CP013562	Rhizobium phaseoli strain N841 plasmid pRphaN841e, complete sequence	1024493-1024525	7	0.788
NZ_CP040505_32	32.60|1890728|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1890728-1890760	33	NZ_CP013567	Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence	1049134-1049166	7	0.788
NZ_CP040505_9	9.40|229092|35|NZ_CP040505|CRISPRCasFinder,CRT	229092-229126	35	NC_013193	Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph01, complete sequence	47738-47772	8	0.771
NZ_CP040505_9	9.51|229886|32|NZ_CP040505|CRISPRCasFinder,CRT	229886-229917	32	NZ_CP045339	Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence	65364-65395	8	0.75
NZ_CP040505_9	9.92|229094|35|NZ_CP040505|PILER-CR	229094-229128	35	NC_013193	Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph01, complete sequence	47738-47772	8	0.771
NZ_CP040505_9	9.103|229888|32|NZ_CP040505|PILER-CR	229888-229919	32	NZ_CP045339	Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence	65364-65395	8	0.75
NZ_CP040505_14	14.3|314407|33|NZ_CP040505|CRISPRCasFinder	314407-314439	33	NZ_CP050092	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence	221357-221389	8	0.758
NZ_CP040505_14	14.3|314407|33|NZ_CP040505|CRISPRCasFinder	314407-314439	33	NZ_CP050081	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence	89531-89563	8	0.758
NZ_CP040505_14	14.3|314407|33|NZ_CP040505|CRISPRCasFinder	314407-314439	33	NZ_CP050098	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence	96120-96152	8	0.758
NZ_CP040505_14	14.3|314407|33|NZ_CP040505|CRISPRCasFinder	314407-314439	33	NZ_CP050104	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence	374168-374200	8	0.758
NZ_CP040505_14	14.3|314407|33|NZ_CP040505|CRISPRCasFinder	314407-314439	33	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	97644-97676	8	0.758
NZ_CP040505_14	14.3|314407|33|NZ_CP040505|CRISPRCasFinder	314407-314439	33	NZ_CP049731	Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence	89936-89968	8	0.758
NZ_CP040505_14	14.3|314407|33|NZ_CP040505|CRISPRCasFinder	314407-314439	33	NZ_CP053440	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence	96759-96791	8	0.758
NZ_CP040505_14	14.3|314407|33|NZ_CP040505|CRISPRCasFinder	314407-314439	33	NZ_CP025507	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence	74828-74860	8	0.758
NZ_CP040505_14	14.3|314407|33|NZ_CP040505|CRISPRCasFinder	314407-314439	33	NZ_LR536451	Methylocella tundrae isolate MTUNDRAET4 annotated genome plasmid 2	222968-223000	8	0.758
NZ_CP040505_14	14.3|314407|33|NZ_CP040505|CRISPRCasFinder	314407-314439	33	NZ_LR536452	Methylocella tundrae isolate MTUNDRAET4 annotated genome plasmid 3	181175-181207	8	0.758
NZ_CP040505_14	14.3|314407|33|NZ_CP040505|CRISPRCasFinder	314407-314439	33	NZ_LR536452	Methylocella tundrae isolate MTUNDRAET4 annotated genome plasmid 3	189367-189399	8	0.758
NZ_CP040505_14	14.3|314407|33|NZ_CP040505|CRISPRCasFinder	314407-314439	33	NZ_CP050109	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence	374168-374200	8	0.758
NZ_CP040505_14	14.3|314407|33|NZ_CP040505|CRISPRCasFinder	314407-314439	33	NZ_CP048281	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248e, complete sequence	117612-117644	8	0.758
NZ_CP040505_14	14.3|314407|33|NZ_CP040505|CRISPRCasFinder	314407-314439	33	NZ_CP030761	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence	198438-198470	8	0.758
NZ_CP040505_14	14.3|314407|33|NZ_CP040505|CRISPRCasFinder	314407-314439	33	NZ_CP054022	Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence	285609-285641	8	0.758
NZ_CP040505_14	14.3|314407|33|NZ_CP040505|CRISPRCasFinder	314407-314439	33	NC_012848	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence	725739-725771	8	0.758
NZ_CP040505_14	14.3|314407|33|NZ_CP040505|CRISPRCasFinder	314407-314439	33	NZ_CP022666	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence	801895-801927	8	0.758
NZ_CP040505_14	14.3|314407|33|NZ_CP040505|CRISPRCasFinder	314407-314439	33	NZ_CP054032	Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence	29068-29100	8	0.758
NZ_CP040505_14	14.3|314407|33|NZ_CP040505|CRISPRCasFinder	314407-314439	33	NZ_CP053206	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence	88020-88052	8	0.758
NZ_CP040505_14	14.3|314407|33|NZ_CP040505|CRISPRCasFinder	314407-314439	33	NZ_CP050086	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence	399025-399057	8	0.758
NZ_CP040505_14	14.3|314407|33|NZ_CP040505|CRISPRCasFinder	314407-314439	33	NZ_CP029830	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence	249857-249889	8	0.758
NZ_CP040505_14	14.3|314407|33|NZ_CP040505|CRISPRCasFinder	314407-314439	33	NZ_CP030762	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed2, complete sequence	367720-367752	8	0.758
NZ_CP040505_14	14.3|314407|33|NZ_CP040505|CRISPRCasFinder	314407-314439	33	NZ_CP050089	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b2, complete sequence	69885-69917	8	0.758
NZ_CP040505_18	18.1|512098|31|NZ_CP040505|CRISPRCasFinder	512098-512128	31	MK059749	Mycobacterium phage CRB2, complete genome	28657-28687	8	0.742
NZ_CP040505_25	25.3|1047679|30|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1047679-1047708	30	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	445849-445878	8	0.733
NZ_CP040505_25	25.3|1047679|30|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1047679-1047708	30	MT521993	Gordonia phage RedWattleHog, complete genome	15686-15715	8	0.733
NZ_CP040505_25	25.3|1047679|30|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1047679-1047708	30	MN586040	Gordonia phage Stormageddon, complete genome	15683-15712	8	0.733
NZ_CP040505_25	25.16|1048620|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1048620-1048652	33	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	883433-883465	8	0.758
NZ_CP040505_27	27.1|1228330|30|NZ_CP040505|CRISPRCasFinder	1228330-1228359	30	NZ_CP020932	Marinobacter salarius strain SMR5 plasmid pSMR5, complete sequence	78499-78528	8	0.733
NZ_CP040505_27	27.1|1228330|30|NZ_CP040505|CRISPRCasFinder	1228330-1228359	30	KF005320	Alteromonas phage vB_AmaP_AD45-P2, complete genome	100086-100115	8	0.733
NZ_CP040505_27	27.1|1228330|30|NZ_CP040505|CRISPRCasFinder	1228330-1228359	30	KF005318	Alteromonas phage vB_AmaP_AD45-P3, complete genome	97774-97803	8	0.733
NZ_CP040505_27	27.1|1228330|30|NZ_CP040505|CRISPRCasFinder	1228330-1228359	30	KF005317	Alteromonas phage vB_AmaP_AD45-P1, complete genome	99960-99989	8	0.733
NZ_CP040505_27	27.1|1228330|30|NZ_CP040505|CRISPRCasFinder	1228330-1228359	30	KF005319	Alteromonas phage vB_AmaP_AD45-P4, complete genome	96669-96698	8	0.733
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	NZ_CP012399	Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence	311021-311050	8	0.733
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	NZ_CP018096	Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence	140378-140407	8	0.733
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	MF415411	Klebsiella phage KPN U2874, complete genome	57525-57554	8	0.733
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	MF476924	Klebsiella phage YMC15/11/N53_KPN_BP, complete genome	57525-57554	8	0.733
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	MF415413	Klebsiella phage KPN N54, complete genome	57525-57554	8	0.733
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	MF415410	Klebsiella phage KPN N137, complete genome	57525-57554	8	0.733
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	MG835858	Klebsiella phage KPN N98, complete genome	57639-57668	8	0.733
NZ_CP040505_32	32.4|1887311|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1887311-1887343	33	MN908689	Arthrobacter phage DrSierra, complete genome	12121-12153	8	0.758
NZ_CP040505_32	32.4|1887311|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1887311-1887343	33	MT889375	Arthrobacter phage Adumb2043, complete genome	12113-12145	8	0.758
NZ_CP040505_32	32.5|1887372|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1887372-1887404	33	NC_020907	Octadecabacter antarcticus 307 plasmid pOA307_63, complete sequence	11319-11351	8	0.758
NZ_CP040505_32	32.5|1887372|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1887372-1887404	33	NZ_CP018784	Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence	475493-475525	8	0.758
NZ_CP040505_32	32.12|1887799|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1887799-1887831	33	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	433879-433911	8	0.758
NZ_CP040505_32	32.14|1887921|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1887921-1887953	33	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	186505-186537	8	0.758
NZ_CP040505_32	32.14|1887921|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1887921-1887953	33	NC_023284	Streptomyces sp. F2 plasmid pFRL4, complete sequence	8512-8544	8	0.758
NZ_CP040505_32	32.25|1888593|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1888593-1888625	33	NZ_CP024907	Paraburkholderia caledonica strain PHRS4 plasmid pPHRS4, complete sequence	60816-60848	8	0.758
NZ_CP040505_32	32.31|1888959|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1888959-1888991	33	NZ_CP024907	Paraburkholderia caledonica strain PHRS4 plasmid pPHRS4, complete sequence	60816-60848	8	0.758
NZ_CP040505_32	32.32|1889020|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889020-1889052	33	NZ_CP021082	Deinococcus ficus strain CC-FR2-10 plasmid pDFI1, complete sequence	392984-393016	8	0.758
NZ_CP040505_32	32.33|1889081|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889081-1889113	33	NZ_CP031358	Erythrobacter aureus strain YH-07 plasmid unnamed, complete sequence	162315-162347	8	0.758
NZ_CP040505_32	32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889996-1890028	33	NZ_CP013634	Rhizobium sp. N324 plasmid pRspN324d, complete sequence	422750-422782	8	0.758
NZ_CP040505_32	32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889996-1890028	33	NC_013852	Allochromatium vinosum DSM 180 plasmid pALVIN01, complete sequence	12087-12119	8	0.758
NZ_CP040505_32	32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889996-1890028	33	NC_019201	Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence	5182-5214	8	0.758
NZ_CP040505_2	2.1|47962|32|NZ_CP040505|CRISPRCasFinder	47962-47993	32	NC_015169	Deinococcus proteolyticus MRP plasmid pDEIPR01, complete sequence	88458-88489	9	0.719
NZ_CP040505_5	5.4|98532|33|NZ_CP040505|CRISPRCasFinder	98532-98564	33	NZ_CP022991	Paraburkholderia aromaticivorans strain BN5 plasmid pBN1, complete sequence	115655-115687	9	0.727
NZ_CP040505_9	9.51|229886|32|NZ_CP040505|CRISPRCasFinder,CRT	229886-229917	32	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	213894-213925	9	0.719
NZ_CP040505_9	9.103|229888|32|NZ_CP040505|PILER-CR	229888-229919	32	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	213894-213925	9	0.719
NZ_CP040505_14	14.2|314345|34|NZ_CP040505|CRISPRCasFinder	314345-314378	34	MN070121	Salmonella phage Shemara, complete genome	24329-24362	9	0.735
NZ_CP040505_14	14.3|314407|33|NZ_CP040505|CRISPRCasFinder	314407-314439	33	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	78975-79007	9	0.727
NZ_CP040505_18	18.1|512098|31|NZ_CP040505|CRISPRCasFinder	512098-512128	31	NC_015063	Rahnella sp. Y9602 plasmid pRAHAQ02, complete sequence	86642-86672	9	0.71
NZ_CP040505_25	25.16|1048620|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1048620-1048652	33	NZ_CP017300	Rhodococcus sp. YL-1 plasmid pYLC1, complete sequence	243569-243601	9	0.727
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	NZ_CP021016	Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6991 plasmid pF, complete sequence	110353-110382	9	0.7
NZ_CP040505_32	32.3|1887250|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1887250-1887282	33	NZ_CP054028	Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence	872616-872648	9	0.727
NZ_CP040505_32	32.5|1887372|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1887372-1887404	33	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	1536971-1537003	9	0.727
NZ_CP040505_32	32.5|1887372|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1887372-1887404	33	NZ_CP021083	Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence	198461-198493	9	0.727
NZ_CP040505_32	32.5|1887372|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1887372-1887404	33	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	595394-595426	9	0.727
NZ_CP040505_32	32.6|1887433|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1887433-1887465	33	NZ_CP020084	Blastomonas fulva strain T2 plasmid unnamed, complete sequence	111043-111075	9	0.727
NZ_CP040505_32	32.30|1888898|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1888898-1888930	33	NZ_CP021763	Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence	79666-79698	9	0.727
NZ_CP040505_32	32.30|1888898|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1888898-1888930	33	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	80132-80164	9	0.727
NZ_CP040505_32	32.30|1888898|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1888898-1888930	33	NZ_CP045381	Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence	159273-159305	9	0.727
NZ_CP040505_32	32.30|1888898|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1888898-1888930	33	NZ_CP019631	Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence	251045-251077	9	0.727
NZ_CP040505_32	32.32|1889020|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889020-1889052	33	NZ_CP051470	Rhodobacter sphaeroides strain CH10 plasmid pRspCH10A, complete sequence	72494-72526	9	0.727
NZ_CP040505_32	32.32|1889020|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889020-1889052	33	NZ_CP015290	Rhodobacter sphaeroides strain MBTLJ-20 plasmid b, complete sequence	56860-56892	9	0.727
NZ_CP040505_32	32.32|1889020|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889020-1889052	33	NC_016654	Rhodococcus phage REQ3, complete genome	21671-21703	9	0.727
NZ_CP040505_32	32.32|1889020|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889020-1889052	33	NZ_CP030273	Rhodobacter sphaeroides 2.4.1 plasmid pA, complete sequence	14202-14234	9	0.727
NZ_CP040505_32	32.32|1889020|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889020-1889052	33	CP047033	Rhodobacter sphaeroides strain DSM 158 plasmid pEA, complete sequence	7870-7902	9	0.727
NZ_CP040505_32	32.32|1889020|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889020-1889052	33	NC_009040	Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, complete sequence	90988-91020	9	0.727
NZ_CP040505_32	32.32|1889020|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889020-1889052	33	NZ_CP047039	Rhodobacter sphaeroides strain 2.4.1 substr. H2 plasmid pEA, complete sequence	7867-7899	9	0.727
NZ_CP040505_32	32.32|1889020|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889020-1889052	33	NZ_CP015213	Rhodobacter sphaeroides strain MBTLJ-13 plasmid b, complete sequence	51672-51704	9	0.727
NZ_CP040505_32	32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889996-1890028	33	NZ_LN831788	Streptomyces leeuwenhoekii strain type strain (C34 = DSM 42122 = NRRL B-24963) plasmid pSLE1, complete sequence	58809-58841	9	0.727
NZ_CP040505_32	32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889996-1890028	33	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	419505-419537	9	0.727
NZ_CP040505_32	32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889996-1890028	33	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	285835-285867	9	0.727
NZ_CP040505_32	32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889996-1890028	33	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	100172-100204	9	0.727
NZ_CP040505_32	32.57|1890545|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1890545-1890577	33	NZ_CP014510	Burkholderia sp. PAMC 28687 plasmid 3, complete sequence	30329-30361	9	0.727
NZ_CP040505_14	14.2|314345|34|NZ_CP040505|CRISPRCasFinder	314345-314378	34	NZ_CP014308	Burkholderia sp. PAMC 26561 plasmid unnamed1, complete sequence	355689-355722	10	0.706
NZ_CP040505_14	14.2|314345|34|NZ_CP040505|CRISPRCasFinder	314345-314378	34	NZ_CP014309	Burkholderia sp. PAMC 26561 plasmid unnamed2, complete sequence	479413-479446	10	0.706
NZ_CP040505_14	14.2|314345|34|NZ_CP040505|CRISPRCasFinder	314345-314378	34	MN393079	Salmonella virus VSiA, complete genome	23729-23762	10	0.706
NZ_CP040505_14	14.2|314345|34|NZ_CP040505|CRISPRCasFinder	314345-314378	34	MH424444	Salmonella virus VSiP, complete genome	23849-23882	10	0.706
NZ_CP040505_18	18.1|512098|31|NZ_CP040505|CRISPRCasFinder	512098-512128	31	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	1829477-1829507	10	0.677
NZ_CP040505_26	26.2|1211814|34|NZ_CP040505|CRISPRCasFinder	1211814-1211847	34	CP017041	Propionibacterium sp. oral taxon 193 strain F0672 plasmid unnamed1, complete sequence	43801-43834	10	0.706
NZ_CP040505_27	27.1|1228330|30|NZ_CP040505|CRISPRCasFinder	1228330-1228359	30	MW042808	Klebsiella phage 066056, complete genome	94-123	10	0.667
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	KC691254	Mycobacterium phage Breezona, complete genome	13917-13946	10	0.667
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	MK937600	Mycobacterium phage Wigglewiggle, complete genome	13949-13978	10	0.667
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	MN586030	Mycobacterium phage BobsGarage, complete genome	13917-13946	10	0.667
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	MN703406	Mycobacterium phage Gabriela, complete genome	13917-13946	10	0.667
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	MH834600	Mycobacterium phage BigCheese, complete genome	13917-13946	10	0.667
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	KC661276	Mycobacterium phage Winky, complete genome	13917-13946	10	0.667
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	NC_022071	Mycobacterium phage Crossroads, complete genome	13917-13946	10	0.667
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	MF185730	Mycobacterium phage Miley16, complete genome	13917-13946	10	0.667
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	KU997639	Mycobacterium phage Loadrie, complete genome	13949-13978	10	0.667
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	MN703410	Mycobacterium phage Itos, complete genome	13917-13946	10	0.667
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	MH779511	Mycobacterium phage LilDestine, complete genome	13916-13945	10	0.667
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	NC_015584	Mycobacterium virus Faith1, complete genome	13917-13946	10	0.667
NZ_CP040505_32	32.6|1887433|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1887433-1887465	33	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	1422579-1422611	10	0.697
NZ_CP040505_32	32.12|1887799|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1887799-1887831	33	NZ_CP041653	Streptomyces sp. RLB1-9 plasmid pRLB1-9.1, complete sequence	130327-130359	10	0.697
NZ_CP040505_32	32.14|1887921|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1887921-1887953	33	NC_020062	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence	1846912-1846944	10	0.697
NZ_CP040505_32	32.30|1888898|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1888898-1888930	33	NZ_CP041653	Streptomyces sp. RLB1-9 plasmid pRLB1-9.1, complete sequence	97518-97550	10	0.697
NZ_CP040505_32	32.30|1888898|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1888898-1888930	33	NZ_CP024936	Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence	45841-45873	10	0.697
NZ_CP040505_32	32.30|1888898|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1888898-1888930	33	NZ_CP016617	Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence	445560-445592	10	0.697
NZ_CP040505_32	32.30|1888898|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1888898-1888930	33	NC_009620	Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence	873791-873823	10	0.697
NZ_CP040505_32	32.40|1889508|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889508-1889540	33	NC_015583	Novosphingobium sp. PP1Y plasmid Mpl, complete sequence	128991-129023	10	0.697
NZ_CP040505_32	32.45|1889813|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889813-1889845	33	NZ_AP022849	Bosea sp. ANAM02 plasmid pANAM02, complete sequence	192035-192067	10	0.697
NZ_CP040505_32	32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889996-1890028	33	NZ_CP020385	Rhodovulum sp. MB263 plasmid pRSMBA, complete sequence	157904-157936	10	0.697
NZ_CP040505_32	32.52|1890240|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1890240-1890272	33	NZ_CP047178	Rathayibacter sp. VKM Ac-2759 plasmid unnamed2, complete sequence	18813-18845	10	0.697
NZ_CP040505_32	32.63|1890911|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1890911-1890943	33	NC_015314	Pseudonocardia dioxanivorans CB1190 plasmid pPSED01, complete sequence	130056-130088	10	0.697
NZ_CP040505_32	32.63|1890911|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1890911-1890943	33	NZ_CP020697	Sulfitobacter sp. D7 plasmid p3SUD7, complete sequence	64400-64432	10	0.697
NZ_CP040505_9	9.26|228067|37|NZ_CP040505|CRISPRCasFinder,CRT	228067-228103	37	KX752698	Mycobacterium phage Tonenili, complete genome	80090-80126	11	0.703
NZ_CP040505_9	9.78|228069|37|NZ_CP040505|PILER-CR	228069-228105	37	KX752698	Mycobacterium phage Tonenili, complete genome	80090-80126	11	0.703
NZ_CP040505_14	14.2|314345|34|NZ_CP040505|CRISPRCasFinder	314345-314378	34	NZ_CP039925	Agrobacterium tumefaciens strain CFBP7129 plasmid pAtCFBP7129b, complete sequence	153251-153284	11	0.676
NZ_CP040505_22	22.2|712799|34|NZ_CP040505|CRT	712799-712832	34	NZ_CP026517	Deinococcus sp. NW-56 plasmid unnamed1, complete sequence	204903-204936	11	0.676
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	MF140422	Mycobacterium phage Nicholasp3, complete genome	13916-13945	11	0.633
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	MN586052	Mycobacterium phage Kahlid, complete genome	13916-13945	11	0.633
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	NC_023732	Mycobacterium phage Rumpelstiltskin, complete genome	13917-13946	11	0.633
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	NC_031124	Mycobacterium phage Gardann, complete genome	13916-13945	11	0.633
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	MF185728	Mycobacterium phage Finemlucis, complete genome	13917-13946	11	0.633
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	KX580962	Mycobacterium phage Wilder, complete genome	13916-13945	11	0.633
NZ_CP040505_27	27.4|1228534|30|NZ_CP040505|CRISPRCasFinder	1228534-1228563	30	KX580961	Mycobacterium phage Zakai, complete genome	13905-13934	11	0.633
NZ_CP040505_32	32.30|1888898|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1888898-1888930	33	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	711328-711360	11	0.667
NZ_CP040505_32	32.30|1888898|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1888898-1888930	33	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	317223-317255	11	0.667
NZ_CP040505_32	32.32|1889020|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889020-1889052	33	NZ_CP045378	Sulfitobacter sp. THAF37 plasmid pTHAF37_f, complete sequence	83193-83225	11	0.667
NZ_CP040505_32	32.32|1889020|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889020-1889052	33	NZ_LR134465	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence	406109-406141	11	0.667
NZ_CP040505_32	32.32|1889020|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR	1889020-1889052	33	NZ_CP021432	Yoonia vestfoldensis strain SMR4r plasmid pSMR4r-1, complete sequence	108187-108219	11	0.667
NZ_CP040505_5	5.2|98409|32|NZ_CP040505|CRISPRCasFinder	98409-98440	32	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	146581-146612	16	0.5
NZ_CP040505_5	5.2|98409|32|NZ_CP040505|CRISPRCasFinder	98409-98440	32	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	900639-900670	16	0.5

1. spacer 32.5|1887372|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to LC473083 (Cutibacterium acnes TP-CU389 plasmid pTZC1 DNA, complete sequence) position: , mismatch: 1, identity: 0.97

ggcatgctcgccaccgtcctcgtgttcgtccgg	CRISPR spacer
ggcatgctcgcaaccgtcctcgtgttcgtccgg	Protospacer
*********** *********************

2. spacer 32.60|1890728|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to LC473083 (Cutibacterium acnes TP-CU389 plasmid pTZC1 DNA, complete sequence) position: , mismatch: 2, identity: 0.939

cgcttgccaagggcgcggttgcgcacgacgcgg	CRISPR spacer
cgcttgccgagggcgcggttgcgcacgacccgg	Protospacer
********.******************** ***

3. spacer 25.3|1047679|30|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 6, identity: 0.8

cggccaacggcgttgagggtg----tgcgcataa	CRISPR spacer
cggccaacggcggtgagggtgacgttccgc----	Protospacer
************ ********    * ***    

4. spacer 25.3|1047679|30|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

cggccaacggcgttgagggtg----tgcgcataa	CRISPR spacer
cggccaacggcggtgagggtgaagttccgc----	Protospacer
************ ********    * ***    

5. spacer 25.3|1047679|30|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

cggccaacggcgttgagggtg----tgcgcataa	CRISPR spacer
cggccaacggcggtgagggtgaagttccgc----	Protospacer
************ ********    * ***    

6. spacer 32.32|1889020|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NC_007960 (Nitrobacter hamburgensis X14 plasmid 2, complete sequence) position: , mismatch: 6, identity: 0.818

gcgccgtcatcgacgaggcccgcaaactcgctg----	CRISPR spacer
gcgccgtcatcgaccagacccgca----cgctgccgc	Protospacer
************** **.******    *****    

7. spacer 32.45|1889813|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NC_015951 (Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, complete sequence) position: , mismatch: 6, identity: 0.818

atcaagaag-cccaggccgccgccacgctcgcgc	CRISPR spacer
-ccacgccgccccaggccgccgccacgcccgcgc	Protospacer
 .** *  * ******************.*****

8. spacer 32.45|1889813|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024426 (Paracoccus yeei strain TT13 plasmid pTT13-4, complete sequence) position: , mismatch: 6, identity: 0.818

--atcaagaagcccaggccgccgccacgctcgcgc	CRISPR spacer
ccgtcatg--gcccaggcggccgccacgctggcgc	Protospacer
  .*** *  ******** *********** ****

9. spacer 32.45|1889813|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020445 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed5, complete sequence) position: , mismatch: 6, identity: 0.818

--atcaagaagcccaggccgccgccacgctcgcgc	CRISPR spacer
ccgtcatg--gcccaggcggccgccacgctggcgc	Protospacer
  .*** *  ******** *********** ****

10. spacer 32.45|1889813|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044079 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.818

--atcaagaagcccaggccgccgccacgctcgcgc	CRISPR spacer
ccgtcatg--gcccaggcggccgccacgctggcgc	Protospacer
  .*** *  ******** *********** ****

11. spacer 32.45|1889813|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031079 (Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence) position: , mismatch: 6, identity: 0.818

--atcaagaagcccaggccgccgccacgctcgcgc	CRISPR spacer
ccgtcatg--gcccaggcggccgccacgctggcgc	Protospacer
  .*** *  ******** *********** ****

12. spacer 32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 6, identity: 0.818

gccctgtc-cgccgtcctcgccgccaacccgatc	CRISPR spacer
-cgctacctcgacgtcctcgccgccaacccgatg	Protospacer
 * **..* ** ********************* 

13. spacer 32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 6, identity: 0.818

gccctgtc-cgccgtcctcgccgccaacccgatc	CRISPR spacer
-cgctacctcgacgtcctcgccgccaacccgatg	Protospacer
 * **..* ** ********************* 

14. spacer 32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to MN234216 (Streptomyces phage Gilgamesh, complete genome) position: , mismatch: 6, identity: 0.818

gccctgtccgc---cgtcctcgccgccaacccgatc	CRISPR spacer
---ccggccgccgacgtcctcgccgccgacccgatc	Protospacer
   *.* ****   *************.********

15. spacer 32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.818

gccctgtccgccgtcctcgccgccaacccgatc	CRISPR spacer
gtcctcgccgccgtcctcgccgccaacgccgtc	Protospacer
*.***  ******************** * .**

16. spacer 32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to CP042595 (Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence) position: , mismatch: 6, identity: 0.818

gccctgtccgccgtcctcgccgccaacccgatc	CRISPR spacer
gccgtcgacgccgtcgtcgccgcccacccgatc	Protospacer
*** *   ******* ******** ********

17. spacer 32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to CP058906 (Micromonospora phage pMLP1, complete sequence) position: , mismatch: 6, identity: 0.818

gccctgtccgccgtcctcgccgccaacccgatc	CRISPR spacer
gccctgtccgccggcctcgccgtcatcgccagc	Protospacer
************* ********.** * * * *

18. spacer 5.2|98409|32|NZ_CP040505|CRISPRCasFinder matches to NZ_KX786187 (Enterobacter cloacae strain N14-0444 plasmid pIMI-6, complete sequence) position: , mismatch: 7, identity: 0.781

tgcccgggcatcatgcccgtctccacaccaga	CRISPR spacer
gcaccgggcatcatgcccgtcgccccacgtga	Protospacer
   ****************** ** ***  **

19. spacer 5.2|98409|32|NZ_CP040505|CRISPRCasFinder matches to NZ_KT225520 (Raoultella ornithinolytica strain RJ46C plasmid pRJ46C, complete sequence) position: , mismatch: 7, identity: 0.781

tgcccgggcatcatgcccgtctccacaccaga	CRISPR spacer
gcaccgggcatcatgcccgtcgccccacgtga	Protospacer
   ****************** ** ***  **

20. spacer 5.4|98532|33|NZ_CP040505|CRISPRCasFinder matches to NZ_CP011520 (Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-3, complete sequence) position: , mismatch: 7, identity: 0.788

---agaatcaccgacaccctgcgcaaacgcgacgac	CRISPR spacer
tttgggat---cgacacccggcgcgaacgcgacgac	Protospacer
   .*.**   ******** ****.***********

21. spacer 5.4|98532|33|NZ_CP040505|CRISPRCasFinder matches to NZ_CP011808 (Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-1, complete sequence) position: , mismatch: 7, identity: 0.788

---agaatcaccgacaccctgcgcaaacgcgacgac	CRISPR spacer
tttgggat---cgacacccggcgcgaacgcgacgac	Protospacer
   .*.**   ******** ****.***********

22. spacer 21.1|653076|30|NZ_CP040505|CRISPRCasFinder matches to NC_007491 (Rhodococcus erythropolis PR4 plasmid pREL1, complete sequence) position: , mismatch: 7, identity: 0.767

----cacaatgaccagccacgttgagcggtggtg	CRISPR spacer
tcgtca----agccagtcacgttgagcggtggtg	Protospacer
    **    ..****.*****************

23. spacer 21.1|653076|30|NZ_CP040505|CRISPRCasFinder matches to NZ_CP050125 (Rhodococcus erythropolis strain KB1 plasmid plas1, complete sequence) position: , mismatch: 7, identity: 0.767

----cacaatgaccagccacgttgagcggtggtg	CRISPR spacer
tcgtca----agccagtcacgttgagcggtggtg	Protospacer
    **    ..****.*****************

24. spacer 21.1|653076|30|NZ_CP040505|CRISPRCasFinder matches to NZ_CP034156 (Rhodococcus sp. NJ-530 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.767

----cacaatgaccagccacgttgagcggtggtg	CRISPR spacer
tcgtca----agccagtcacgttgagcggtggtg	Protospacer
    **    ..****.*****************

25. spacer 22.3|712861|34|NZ_CP040505|CRT matches to MN693337 (Marine virus AFVG_25M253, complete genome) position: , mismatch: 7, identity: 0.794

tgagttcggagccgccgcagccatgatcggcctg	CRISPR spacer
tggaatcggaacctccgcagccatgatcggccac	Protospacer
**.. *****.** ******************  

26. spacer 24.1|972343|30|NZ_CP040505|CRISPRCasFinder matches to NZ_CP021355 (Rhodococcus sp. S2-17 plasmid pRB98, complete sequence) position: , mismatch: 7, identity: 0.767

agtccgccg--aatgaccaccccgcgccacgc	CRISPR spacer
--cccgtgaacaatgcccaccccgcgccacgc	Protospacer
  .***. .  **** ****************

27. spacer 25.16|1048620|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP012556 (Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence) position: , mismatch: 7, identity: 0.788

ttttggaggcggctggggagacgctgggttcgg	CRISPR spacer
tgttgaaggcggcttgggagacgctgaatccga	Protospacer
* ***.******** ***********..*.**.

28. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to MN329674 (Mycobacterium phage JoieB, complete genome) position: , mismatch: 7, identity: 0.767

tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
tggggccttcggctgggcctgcggaccccg	Protospacer
*********** *** *******.*.*   

29. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to MH727562 (Mycobacterium phage VasuNzinga, complete genome) position: , mismatch: 7, identity: 0.767

tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
tggggccttcggctgggcctgcggaccccg	Protospacer
*********** *** *******.*.*   

30. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to MN428056 (Mycobacterium phage Pringar, complete genome) position: , mismatch: 7, identity: 0.767

tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
tggggccttcggctgggcctgcggaccccg	Protospacer
*********** *** *******.*.*   

31. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to MK061407 (Mycobacterium phage Beelzebub, complete genome) position: , mismatch: 7, identity: 0.767

tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
tggggccttcggctgggcctgcggaccccg	Protospacer
*********** *** *******.*.*   

32. spacer 28.2|1286188|29|NZ_CP040505|PILER-CR matches to NZ_CP016617 (Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

gaatcc----ccacctcatcgcccactccgatc	CRISPR spacer
----cctgggccgcctcatcgcccactccgagg	Protospacer
    **    **.******************  

33. spacer 32.4|1887311|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NC_017324 (Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence) position: , mismatch: 7, identity: 0.788

atccaaagcatcttcaccgtcatccaaggcatc	CRISPR spacer
ggcgaaagcatcttcaccgtgatccaaggcggg	Protospacer
. * **************** *********.  

34. spacer 32.4|1887311|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NC_015597 (Sinorhizobium meliloti AK83 plasmid pSINME01, complete sequence) position: , mismatch: 7, identity: 0.788

atccaaagcatcttcaccgtcatccaaggcatc	CRISPR spacer
ggcgaaagcatcttcaccgtgatccaaggcggg	Protospacer
. * **************** *********.  

35. spacer 32.4|1887311|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021794 (Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence) position: , mismatch: 7, identity: 0.788

atccaaagcatcttcaccgtcatccaaggcatc	CRISPR spacer
ggcgaaagcatcttcaccgtgatccaaggcggg	Protospacer
. * **************** *********.  

36. spacer 32.4|1887311|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to MN813676 (Arthrobacter phage Adolin, complete genome) position: , mismatch: 7, identity: 0.788

atccaaagcatcttcaccgtcatccaaggcatc	CRISPR spacer
ttctccggcatcttcaccgtgatccaaggcgtc	Protospacer
 **.  .************* *********.**

37. spacer 32.4|1887311|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to MH834610 (Arthrobacter phage DrManhattan, complete genome) position: , mismatch: 7, identity: 0.788

atccaaagcatcttcaccgtcatccaaggcatc	CRISPR spacer
ttctccggcatcttcaccgtgatccaaggcgtc	Protospacer
 **.  .************* *********.**

38. spacer 32.5|1887372|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 7, identity: 0.788

ggcatgctcgccaccgtcctcgtgttcgtccgg	CRISPR spacer
acgatgctcgtcaccgtcttcgtgttcgtcggt	Protospacer
.  *******.*******.*********** * 

39. spacer 32.27|1888715|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NC_031944 (Synechococcus phage S-WAM1 isolate 0810PA09, complete genome) position: , mismatch: 7, identity: 0.788

gtgatgttgtcaagaatgactttgaggccaacc	CRISPR spacer
gcgaagttgtcaagattgactttgaggcatctc	Protospacer
*.** ********** ************   .*

40. spacer 32.29|1888837|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to KT870145 (Roseobacter phage DSS3P8, complete genome) position: , mismatch: 7, identity: 0.788

gactat-tgcgccgtcagacaatttcctacgggg	CRISPR spacer
-acggtgttcgccatcagacaatttcctccgggt	Protospacer
 ** .* * ****.************** **** 

41. spacer 32.29|1888837|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to MH015255 (Ruegeria phage vB_RpoS-V10, complete genome) position: , mismatch: 7, identity: 0.788

gactat-tgcgccgtcagacaatttcctacgggg	CRISPR spacer
-acggtgttcgccatcagacaatttcctccgggt	Protospacer
 ** .* * ****.************** **** 

42. spacer 32.30|1888898|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033315 (Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.788

agtgcgcc--ggtgatcttgtcggcgccgatcgca	CRISPR spacer
--tgcagcagggtcatcgtgtcggcgccgatcgcc	Protospacer
  ***. *  *** *** **************** 

43. spacer 32.30|1888898|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032342 (Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.788

agtgcgcc--ggtgatcttgtcggcgccgatcgca	CRISPR spacer
--tgcagcagggtcatcgtgtcggcgccgatcgcc	Protospacer
  ***. *  *** *** **************** 

44. spacer 32.30|1888898|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033321 (Azospirillum brasilense strain Cd plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.788

agtgcgcc--ggtgatcttgtcggcgccgatcgca	CRISPR spacer
--tgcagcagggtcatcgtgtcggcgccgatcgcc	Protospacer
  ***. *  *** *** **************** 

45. spacer 32.32|1889020|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 7, identity: 0.788

gcgccgtcatcgacgaggcccgcaaactcgctg	CRISPR spacer
gcgccgtcttcgacgaggccggcaaacatcttc	Protospacer
******** *********** ****** . .* 

46. spacer 32.45|1889813|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NC_011311 (Aliivibrio salmonicida LFI1238 plasmid pVSAL840, complete sequence) position: , mismatch: 7, identity: 0.788

atcaagaagcccaggccgccgccacgctcgcgc	CRISPR spacer
accaagaagcgcaagccgccgccacgattgacc	Protospacer
*.******** **.************ *.*  *

47. spacer 32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048642 (Streptomyces aureoverticillatus strain HN6 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

gccctgtccgccgtcctcgccgccaacccgatc	CRISPR spacer
gccctggccgccgtgctcgccgccatcaaggcc	Protospacer
****** ******* ********** *  *..*

48. spacer 32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 7, identity: 0.788

gccctgtccgccgtcctcgccgccaacccgatc---	CRISPR spacer
gccctgtccggcctcctcgccgc---cctgaccggt	Protospacer
********** * **********   **.**.*   

49. spacer 32.52|1890240|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 7, identity: 0.788

ggagccggggcgggcttctcctccgtcttcttc	CRISPR spacer
cgtgccagggcgcgcttctcctccgtctcgatc	Protospacer
 * ***.***** ***************.  **

50. spacer 32.55|1890423|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041042 (Paracoccus sp. AK26 plasmid pAK4, complete sequence) position: , mismatch: 7, identity: 0.788

agagagtggttgctgggcgccgcatctgcggcg	CRISPR spacer
cgggggatattgctgggcgccgcaactgcggcg	Protospacer
 *.*.*  .*************** ********

51. spacer 32.60|1890728|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013556 (Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence) position: , mismatch: 7, identity: 0.788

cgcttgccaagggcgcggttgcgcacgacgcgg	CRISPR spacer
ccattgccaagcgcgccgttgcgcacggcaagg	Protospacer
*  ******** **** **********.*. **

52. spacer 32.60|1890728|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013562 (Rhizobium phaseoli strain N841 plasmid pRphaN841e, complete sequence) position: , mismatch: 7, identity: 0.788

cgcttgccaagggcgcggttgcgcacgacgcgg	CRISPR spacer
ccattgccaagcgcgccgttgcgcacggcaagg	Protospacer
*  ******** **** **********.*. **

53. spacer 32.60|1890728|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013567 (Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence) position: , mismatch: 7, identity: 0.788

cgcttgccaagggcgcggttgcgcacgacgcgg	CRISPR spacer
ccattgccaagcgcgccgttgcgcacggcaagg	Protospacer
*  ******** **** **********.*. **

54. spacer 9.40|229092|35|NZ_CP040505|CRISPRCasFinder,CRT matches to NC_013193 (Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph01, complete sequence) position: , mismatch: 8, identity: 0.771

ctccctaatgcctacctggactaacagatgccagc	CRISPR spacer
cttctcaatgcctacctggactcgcagatgcttgg	Protospacer
**.*..**************** .*******. * 

55. spacer 9.51|229886|32|NZ_CP040505|CRISPRCasFinder,CRT matches to NZ_CP045339 (Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence) position: , mismatch: 8, identity: 0.75

tgaaaggagcataattgtgttggacacggaaa	CRISPR spacer
tgaaacgagcatcattgtgttgggcgacggag	Protospacer
***** ****** **********.*.  *.*.

56. spacer 9.92|229094|35|NZ_CP040505|PILER-CR matches to NC_013193 (Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph01, complete sequence) position: , mismatch: 8, identity: 0.771

ctccctaatgcctacctggactaacagatgccagc	CRISPR spacer
cttctcaatgcctacctggactcgcagatgcttgg	Protospacer
**.*..**************** .*******. * 

57. spacer 9.103|229888|32|NZ_CP040505|PILER-CR matches to NZ_CP045339 (Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence) position: , mismatch: 8, identity: 0.75

tgaaaggagcataattgtgttggacacggaaa	CRISPR spacer
tgaaacgagcatcattgtgttgggcgacggag	Protospacer
***** ****** **********.*.  *.*.

58. spacer 14.3|314407|33|NZ_CP040505|CRISPRCasFinder matches to NZ_CP050092 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence) position: , mismatch: 8, identity: 0.758

tgacctggccgccgaccttcaccttggcgggcg	CRISPR spacer
cgtcgaagccgccgaccttcacattggcgagct	Protospacer
.* *  .*************** ******.** 

59. spacer 14.3|314407|33|NZ_CP040505|CRISPRCasFinder matches to NZ_CP050081 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence) position: , mismatch: 8, identity: 0.758

tgacctggccgccgaccttcaccttggcgggcg	CRISPR spacer
cgtcgaagccgccgaccttcacattggcgagct	Protospacer
.* *  .*************** ******.** 

60. spacer 14.3|314407|33|NZ_CP040505|CRISPRCasFinder matches to NZ_CP050098 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence) position: , mismatch: 8, identity: 0.758

tgacctggccgccgaccttcaccttggcgggcg	CRISPR spacer
cgtcaaagccgccgaccttcacattggcgagct	Protospacer
.* *  .*************** ******.** 

61. spacer 14.3|314407|33|NZ_CP040505|CRISPRCasFinder matches to NZ_CP050104 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence) position: , mismatch: 8, identity: 0.758

tgacctggccgccgaccttcaccttggcgggcg	CRISPR spacer
cgtcgaagccgccgaccttcacattggcgagct	Protospacer
.* *  .*************** ******.** 

62. spacer 14.3|314407|33|NZ_CP040505|CRISPRCasFinder matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 8, identity: 0.758

tgacctggccgccgaccttcaccttggcgggcg	CRISPR spacer
cgtcgaagccgccgaccttcacattggcgagct	Protospacer
.* *  .*************** ******.** 

63. spacer 14.3|314407|33|NZ_CP040505|CRISPRCasFinder matches to NZ_CP049731 (Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence) position: , mismatch: 8, identity: 0.758

tgacctggccgccgaccttcaccttggcgggcg	CRISPR spacer
cgtcgaagccgccgaccttcacattggcgagct	Protospacer
.* *  .*************** ******.** 

64. spacer 14.3|314407|33|NZ_CP040505|CRISPRCasFinder matches to NZ_CP053440 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence) position: , mismatch: 8, identity: 0.758

tgacctggccgccgaccttcaccttggcgggcg	CRISPR spacer
cgtcaaagccgccgaccttcacattggcgagct	Protospacer
.* *  .*************** ******.** 

65. spacer 14.3|314407|33|NZ_CP040505|CRISPRCasFinder matches to NZ_CP025507 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence) position: , mismatch: 8, identity: 0.758

tgacctggccgccgaccttcaccttggcgggcg	CRISPR spacer
cgtcgaagccgccgaccttcacattggcgagct	Protospacer
.* *  .*************** ******.** 

66. spacer 14.3|314407|33|NZ_CP040505|CRISPRCasFinder matches to NZ_LR536451 (Methylocella tundrae isolate MTUNDRAET4 annotated genome plasmid 2) position: , mismatch: 8, identity: 0.758

tgacctggccgccgaccttcaccttggcgggcg	CRISPR spacer
gcgccgccccgccgaccttccccttggcggccg	Protospacer
  .**   ************ ********* **

67. spacer 14.3|314407|33|NZ_CP040505|CRISPRCasFinder matches to NZ_LR536452 (Methylocella tundrae isolate MTUNDRAET4 annotated genome plasmid 3) position: , mismatch: 8, identity: 0.758

tgacctggccgccgaccttcaccttggcgggcg	CRISPR spacer
gcgccgccccgccgaccttccccttggcggccg	Protospacer
  .**   ************ ********* **

68. spacer 14.3|314407|33|NZ_CP040505|CRISPRCasFinder matches to NZ_LR536452 (Methylocella tundrae isolate MTUNDRAET4 annotated genome plasmid 3) position: , mismatch: 8, identity: 0.758

tgacctggccgccgaccttcaccttggcgggcg	CRISPR spacer
gcgccgccccgccgaccttccccttggcggccg	Protospacer
  .**   ************ ********* **

69. spacer 14.3|314407|33|NZ_CP040505|CRISPRCasFinder matches to NZ_CP050109 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence) position: , mismatch: 8, identity: 0.758

tgacctggccgccgaccttcaccttggcgggcg	CRISPR spacer
cgtcgaagccgccgaccttcacattggcgagct	Protospacer
.* *  .*************** ******.** 

70. spacer 14.3|314407|33|NZ_CP040505|CRISPRCasFinder matches to NZ_CP048281 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248e, complete sequence) position: , mismatch: 8, identity: 0.758

tgacctggccgccgaccttcaccttggcgggcg	CRISPR spacer
cgtcgaagccgccgaccttcacattggcgagct	Protospacer
.* *  .*************** ******.** 

71. spacer 14.3|314407|33|NZ_CP040505|CRISPRCasFinder matches to NZ_CP030761 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.758

tgacctggccgccgaccttcaccttggcgggcg	CRISPR spacer
cgtcgaagccgccgaccttcacattggcgagct	Protospacer
.* *  .*************** ******.** 

72. spacer 14.3|314407|33|NZ_CP040505|CRISPRCasFinder matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 8, identity: 0.758

tgacctggccgccgaccttcaccttggcgggcg	CRISPR spacer
cgtcgaagccgccgaccttcacattggcgagct	Protospacer
.* *  .*************** ******.** 

73. spacer 14.3|314407|33|NZ_CP040505|CRISPRCasFinder matches to NC_012848 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence) position: , mismatch: 8, identity: 0.758

tgacctggccgccgaccttcaccttggcgggcg	CRISPR spacer
cgtcgaagccgccgaccttcacattggcgagct	Protospacer
.* *  .*************** ******.** 

74. spacer 14.3|314407|33|NZ_CP040505|CRISPRCasFinder matches to NZ_CP022666 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence) position: , mismatch: 8, identity: 0.758

tgacctggccgccgaccttcaccttggcgggcg	CRISPR spacer
cgtcgaagccgccgaccttcacattggcgagct	Protospacer
.* *  .*************** ******.** 

75. spacer 14.3|314407|33|NZ_CP040505|CRISPRCasFinder matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 8, identity: 0.758

tgacctggccgccgaccttcaccttggcgggcg	CRISPR spacer
cgtcgaagccgccgaccttcacattggcgagct	Protospacer
.* *  .*************** ******.** 

76. spacer 14.3|314407|33|NZ_CP040505|CRISPRCasFinder matches to NZ_CP053206 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence) position: , mismatch: 8, identity: 0.758

tgacctggccgccgaccttcaccttggcgggcg	CRISPR spacer
cgtcgaagccgccgaccttcacattggcgagct	Protospacer
.* *  .*************** ******.** 

77. spacer 14.3|314407|33|NZ_CP040505|CRISPRCasFinder matches to NZ_CP050086 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence) position: , mismatch: 8, identity: 0.758

tgacctggccgccgaccttcaccttggcgggcg	CRISPR spacer
cgtcgaagccgccgaccttcacattggcgagct	Protospacer
.* *  .*************** ******.** 

78. spacer 14.3|314407|33|NZ_CP040505|CRISPRCasFinder matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.758

tgacctggccgccgaccttcaccttggcgggcg	CRISPR spacer
tcacctggccgtcgaccatcaccttgaaatggg	Protospacer
* *********.***** ********. . * *

79. spacer 14.3|314407|33|NZ_CP040505|CRISPRCasFinder matches to NZ_CP030762 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.758

--tgacctggccgccgaccttcaccttggcgggcg	CRISPR spacer
cctga--tggccgccgaccttcacctcgccgcctt	Protospacer
  ***  *******************.* **  . 

80. spacer 14.3|314407|33|NZ_CP040505|CRISPRCasFinder matches to NZ_CP050089 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b2, complete sequence) position: , mismatch: 8, identity: 0.758

--tgacctggccgccgaccttcaccttggcgggcg	CRISPR spacer
cctga--tggccgccgaccttcacctcgccgcctt	Protospacer
  ***  *******************.* **  . 

81. spacer 18.1|512098|31|NZ_CP040505|CRISPRCasFinder matches to MK059749 (Mycobacterium phage CRB2, complete genome) position: , mismatch: 8, identity: 0.742

gatctactcggctggcctggctgctttgcgt	CRISPR spacer
gatctcctcggctggccaggctggcgtggac	Protospacer
***** *********** ***** . ** ..

82. spacer 25.3|1047679|30|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.733

cggccaacggcgttgagggtgtgcgcataa	CRISPR spacer
ccgccaacggcgttgaggatctgcgtccgc	Protospacer
* ****************.* ****. .. 

83. spacer 25.3|1047679|30|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to MT521993 (Gordonia phage RedWattleHog, complete genome) position: , mismatch: 8, identity: 0.733

cggccaacggcgttgagggtgtgcgcataa	CRISPR spacer
gggccaacggcgtcgaggatgtgctggtct	Protospacer
 ************.****.*****  .*  

84. spacer 25.3|1047679|30|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to MN586040 (Gordonia phage Stormageddon, complete genome) position: , mismatch: 8, identity: 0.733

cggccaacggcgttgagggtgtgcgcataa	CRISPR spacer
gggccaacggcgtcgaggatgtgctggtct	Protospacer
 ************.****.*****  .*  

85. spacer 25.16|1048620|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 8, identity: 0.758

ttttggaggcggctggggagacgctgggttcgg	CRISPR spacer
tcctggaggcggctgcggcgacgctgggcgggt	Protospacer
*..************ ** *********.  * 

86. spacer 27.1|1228330|30|NZ_CP040505|CRISPRCasFinder matches to NZ_CP020932 (Marinobacter salarius strain SMR5 plasmid pSMR5, complete sequence) position: , mismatch: 8, identity: 0.733

tgtgctgtcttctgcggcttcgctctcagt--	CRISPR spacer
caggctgtcttcggcggcttcg--cttggtcg	Protospacer
.. ********* *********  **..**  

87. spacer 27.1|1228330|30|NZ_CP040505|CRISPRCasFinder matches to KF005320 (Alteromonas phage vB_AmaP_AD45-P2, complete genome) position: , mismatch: 8, identity: 0.733

tgtgctgtcttctgcggcttcgctctcagt	CRISPR spacer
gataacctcttctgcagcttcgatctcagt	Protospacer
 .*. . ********.****** *******

88. spacer 27.1|1228330|30|NZ_CP040505|CRISPRCasFinder matches to KF005318 (Alteromonas phage vB_AmaP_AD45-P3, complete genome) position: , mismatch: 8, identity: 0.733

tgtgctgtcttctgcggcttcgctctcagt	CRISPR spacer
gataacctcttctgcagcttcgatctcagt	Protospacer
 .*. . ********.****** *******

89. spacer 27.1|1228330|30|NZ_CP040505|CRISPRCasFinder matches to KF005317 (Alteromonas phage vB_AmaP_AD45-P1, complete genome) position: , mismatch: 8, identity: 0.733

tgtgctgtcttctgcggcttcgctctcagt	CRISPR spacer
gataacctcttctgcagcttcgatctcagt	Protospacer
 .*. . ********.****** *******

90. spacer 27.1|1228330|30|NZ_CP040505|CRISPRCasFinder matches to KF005319 (Alteromonas phage vB_AmaP_AD45-P4, complete genome) position: , mismatch: 8, identity: 0.733

tgtgctgtcttctgcggcttcgctctcagt	CRISPR spacer
gataacctcttctgcagcttcgatctcagt	Protospacer
 .*. . ********.****** *******

91. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to NZ_CP012399 (Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence) position: , mismatch: 8, identity: 0.733

tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
ttcggccttggcctgcgcctgcgcatagcg	Protospacer
*  ****** ************* ** .  

92. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to NZ_CP018096 (Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence) position: , mismatch: 8, identity: 0.733

tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
ttcggccttcgcctgcgcccgcgcatagcg	Protospacer
*  ****************.*** ** .  

93. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to MF415411 (Klebsiella phage KPN U2874, complete genome) position: , mismatch: 8, identity: 0.733

tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
atcggccttcgcttccgcctgcgaattcat	Protospacer
   *********.* ***********. .*

94. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to MF476924 (Klebsiella phage YMC15/11/N53_KPN_BP, complete genome) position: , mismatch: 8, identity: 0.733

tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
atcggccttcgcttccgcctgcgaattcat	Protospacer
   *********.* ***********. .*

95. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to MF415413 (Klebsiella phage KPN N54, complete genome) position: , mismatch: 8, identity: 0.733

tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
atcggccttcgcttccgcctgcgaattcat	Protospacer
   *********.* ***********. .*

96. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to MF415410 (Klebsiella phage KPN N137, complete genome) position: , mismatch: 8, identity: 0.733

tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
atcggccttcgcttccgcctgcgaattcat	Protospacer
   *********.* ***********. .*

97. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to MG835858 (Klebsiella phage KPN N98, complete genome) position: , mismatch: 8, identity: 0.733

tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
atcggccttcgcttccgcctgcgaattcat	Protospacer
   *********.* ***********. .*

98. spacer 32.4|1887311|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to MN908689 (Arthrobacter phage DrSierra, complete genome) position: , mismatch: 8, identity: 0.758

atccaaagcatcttcaccgtcatccaaggcatc	CRISPR spacer
ttctccggaatcttcaccgtgatccaaggcgtc	Protospacer
 **.  .* *********** *********.**

99. spacer 32.4|1887311|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to MT889375 (Arthrobacter phage Adumb2043, complete genome) position: , mismatch: 8, identity: 0.758

atccaaagcatcttcaccgtcatccaaggcatc	CRISPR spacer
ttctccgggatcttcaccgtgatccaaggcgtc	Protospacer
 **.  .* *********** *********.**

100. spacer 32.5|1887372|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NC_020907 (Octadecabacter antarcticus 307 plasmid pOA307_63, complete sequence) position: , mismatch: 8, identity: 0.758

-ggcatgctcgccaccgtcctcgtgttcgtccgg	CRISPR spacer
cggtgc-ctcaccaccgtcctcgggttcgtcgga	Protospacer
 **... ***.************ ******* *.

101. spacer 32.5|1887372|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018784 (Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence) position: , mismatch: 8, identity: 0.758

ggcatgctcgccaccgtcctcgtgttcgtccgg	CRISPR spacer
gcgctgctcggcaccgtcctcgcgttcgccggc	Protospacer
*   ****** ***********.*****.* * 

102. spacer 32.12|1887799|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.758

acccgcacgaggtggagcgtgctgccccctgtg	CRISPR spacer
gcgcgcacgaggttgagcgtgctggccaggttg	Protospacer
.* ********** ********** **    **

103. spacer 32.14|1887921|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 8, identity: 0.758

gcgatcgccacagccgtcggcgtcatcatggcc	CRISPR spacer
gcgatccccaccgccgtcggcgtcacagggacg	Protospacer
****** **** *************. . *.* 

104. spacer 32.14|1887921|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NC_023284 (Streptomyces sp. F2 plasmid pFRL4, complete sequence) position: , mismatch: 8, identity: 0.758

gcgatcgccacagccgtcggcgtcatcatggcc	CRISPR spacer
atgtccgccacagccgtcagcgtcatcctgatc	Protospacer
..* .*************.******** **..*

105. spacer 32.25|1888593|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024907 (Paraburkholderia caledonica strain PHRS4 plasmid pPHRS4, complete sequence) position: , mismatch: 8, identity: 0.758

ggcggtttcctcacggatgtcacgaaacaggcg	CRISPR spacer
ggcggtttcctcacgcatgccacgcacgacgga	Protospacer
*************** ***.**** *  * * .

106. spacer 32.31|1888959|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024907 (Paraburkholderia caledonica strain PHRS4 plasmid pPHRS4, complete sequence) position: , mismatch: 8, identity: 0.758

ggcggtttcctcacggatgtcacgaaacaggcg	CRISPR spacer
ggcggtttcctcacgcatgccacgcacgacgga	Protospacer
*************** ***.**** *  * * .

107. spacer 32.32|1889020|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021082 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI1, complete sequence) position: , mismatch: 8, identity: 0.758

gcgccgtcatcgacgaggcccgcaaactcgctg	CRISPR spacer
gcgccgtcatcgacgaggtgcgcagctacacgg	Protospacer
******************. ****. . *.* *

108. spacer 32.33|1889081|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031358 (Erythrobacter aureus strain YH-07 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

tttcgcatggccgccagctcagcctgcgtgacc	CRISPR spacer
tggccgatggccgccaggtcagcctgcgcgaag	Protospacer
*  *  *********** **********.**  

109. spacer 32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013634 (Rhizobium sp. N324 plasmid pRspN324d, complete sequence) position: , mismatch: 8, identity: 0.758

gccctgtccgccgtcctcgccgccaacccgatc	CRISPR spacer
gaactgaccgccgtcatcgccgccaacatgctg	Protospacer
*  *** ******** *********** .* * 

110. spacer 32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NC_013852 (Allochromatium vinosum DSM 180 plasmid pALVIN01, complete sequence) position: , mismatch: 8, identity: 0.758

gccctgtccgccgtcctcgccgccaacccgatc	CRISPR spacer
gccctgtgcgccgtcctcaccgccggcaccacg	Protospacer
******* **********.*****..* * *. 

111. spacer 32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NC_019201 (Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence) position: , mismatch: 8, identity: 0.758

gccctgtccgccgtcctcgccgccaacccgatc----	CRISPR spacer
gcccggtccgccgtccgcgccg----cccgacgctca	Protospacer
**** *********** *****    *****.     

112. spacer 2.1|47962|32|NZ_CP040505|CRISPRCasFinder matches to NC_015169 (Deinococcus proteolyticus MRP plasmid pDEIPR01, complete sequence) position: , mismatch: 9, identity: 0.719

acacaactgtggccagcgcgggtcgctgagcc	CRISPR spacer
gtctgtcagtggcaggcgcgggtcgctgagcc	Protospacer
.. .. * ***** .*****************

113. spacer 5.4|98532|33|NZ_CP040505|CRISPRCasFinder matches to NZ_CP022991 (Paraburkholderia aromaticivorans strain BN5 plasmid pBN1, complete sequence) position: , mismatch: 9, identity: 0.727

agaatcaccgacaccctgcgcaaacgcgacgac	CRISPR spacer
tgccggatcgacacccggcgcgaacgcgacgat	Protospacer
 *    *.******** ****.**********.

114. spacer 9.51|229886|32|NZ_CP040505|CRISPRCasFinder,CRT matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 9, identity: 0.719

tgaaaggagcataattgtgttggacacggaaa	CRISPR spacer
ggaaaggagcataatcgtgtcggatcggttac	Protospacer
 **************.****.***.  *  * 

115. spacer 9.103|229888|32|NZ_CP040505|PILER-CR matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 9, identity: 0.719

tgaaaggagcataattgtgttggacacggaaa	CRISPR spacer
ggaaaggagcataatcgtgtcggatcggttac	Protospacer
 **************.****.***.  *  * 

116. spacer 14.2|314345|34|NZ_CP040505|CRISPRCasFinder matches to MN070121 (Salmonella phage Shemara, complete genome) position: , mismatch: 9, identity: 0.735

gatcacctgcagcgcatcaaggaactcgaagagc	CRISPR spacer
aaggaactgaagcgaatcaaggaactcgaagccg	Protospacer
.*  * *** **** ****************   

117. spacer 14.3|314407|33|NZ_CP040505|CRISPRCasFinder matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 9, identity: 0.727

tgacctggccgccgaccttcaccttggcgggcg	CRISPR spacer
cgcgctcgccgccggccttcaccttggcgccac	Protospacer
.*  ** *******.**************    

118. spacer 18.1|512098|31|NZ_CP040505|CRISPRCasFinder matches to NC_015063 (Rahnella sp. Y9602 plasmid pRAHAQ02, complete sequence) position: , mismatch: 9, identity: 0.71

gatctactcggctggcctggctgctttgcgt	CRISPR spacer
aaccttcacggctggcctggctgcttcagcc	Protospacer
.*.** * ******************..  .

119. spacer 25.16|1048620|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017300 (Rhodococcus sp. YL-1 plasmid pYLC1, complete sequence) position: , mismatch: 9, identity: 0.727

ttttggaggcggctggggagacgctgggttcgg	CRISPR spacer
gcatggaggcggctgcggagacgccggccgcgc	Protospacer
 . ************ ********.** . ** 

120. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to NZ_CP021016 (Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6991 plasmid pF, complete sequence) position: , mismatch: 9, identity: 0.7

tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
ctcggcctgcgcctgcgcctgcgcatgctc	Protospacer
.  ***** ************** **   .

121. spacer 32.3|1887250|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 9, identity: 0.727

ggctatcaggatgcgcgccgagccctgtatgcg	CRISPR spacer
ggctatcaggatcagcgccgagccggtcatttc	Protospacer
************  **********   .** . 

122. spacer 32.5|1887372|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.727

ggcatgctcgccaccgtcctcgtgttcgtccgg	CRISPR spacer
gaagggatcgccaccgtcctcgtcctcgtcctc	Protospacer
*. . * **************** .******  

123. spacer 32.5|1887372|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021083 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence) position: , mismatch: 9, identity: 0.727

ggcatgctcgccaccgtcctcgtgttcgtccgg	CRISPR spacer
gtcggcatcgtcaccggcctcgtgttcgtcctc	Protospacer
* *.   ***.***** **************  

124. spacer 32.5|1887372|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 9, identity: 0.727

ggcatgctcgccaccgtcctcgtgttcgtccgg	CRISPR spacer
gaagggatcgccaccgtcctcgtcctcgtcctc	Protospacer
*. . * **************** .******  

125. spacer 32.6|1887433|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020084 (Blastomonas fulva strain T2 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.727

tccatgtatcggggatcgcgcgcgcatcgggtg	CRISPR spacer
ccagttcatcggcgatcgcgcgcgcatccggga	Protospacer
.* .* .***** *************** ** .

126. spacer 32.30|1888898|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021763 (Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.727

agtgcgccggtgatcttgtcggcgccgatcgca	CRISPR spacer
tccacgccgatgatcttgtcggcgccgaccatc	Protospacer
  ..*****.******************.*.. 

127. spacer 32.30|1888898|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 9, identity: 0.727

agtgcgccggtgatcttgtcggcgccgatcgca	CRISPR spacer
tccacgccgatgatcttgtcggcgccgaccatc	Protospacer
  ..*****.******************.*.. 

128. spacer 32.30|1888898|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045381 (Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence) position: , mismatch: 9, identity: 0.727

agtgcgccggtgatcttgtcggcgccgatcgca	CRISPR spacer
gaaccgccggtgatcttggcgccgccgagcacc	Protospacer
..  ************** ** ****** *.* 

129. spacer 32.30|1888898|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019631 (Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

agtgcgccggtgatcttgtcggcgccgatcgca	CRISPR spacer
gaaccgccggtgatcttggcgccgccgagcacc	Protospacer
..  ************** ** ****** *.* 

130. spacer 32.32|1889020|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP051470 (Rhodobacter sphaeroides strain CH10 plasmid pRspCH10A, complete sequence) position: , mismatch: 9, identity: 0.727

gcgccgtcatcgacgaggcccgcaaactcgctg	CRISPR spacer
gcgccatcatcgacgcggcccgcaccgcggtcg	Protospacer
*****.********* ********   . *..*

131. spacer 32.32|1889020|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015290 (Rhodobacter sphaeroides strain MBTLJ-20 plasmid b, complete sequence) position: , mismatch: 9, identity: 0.727

gcgccgtcatcgacgaggcccgcaaactcgctg	CRISPR spacer
gcgccatcatcgacgcggcccgcaccgcggtcg	Protospacer
*****.********* ********   . *..*

132. spacer 32.32|1889020|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NC_016654 (Rhodococcus phage REQ3, complete genome) position: , mismatch: 9, identity: 0.727

gcgccgtcatcgacgaggcccgcaaactcgctg	CRISPR spacer
ccgccgtcatcgacgagttccgcaaggaatccg	Protospacer
 **************** .******.    *.*

133. spacer 32.32|1889020|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030273 (Rhodobacter sphaeroides 2.4.1 plasmid pA, complete sequence) position: , mismatch: 9, identity: 0.727

gcgccgtcatcgacgaggcccgcaaactcgctg	CRISPR spacer
gcgccatcatcgacgcggcccgcaccgcggtcg	Protospacer
*****.********* ********   . *..*

134. spacer 32.32|1889020|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to CP047033 (Rhodobacter sphaeroides strain DSM 158 plasmid pEA, complete sequence) position: , mismatch: 9, identity: 0.727

gcgccgtcatcgacgaggcccgcaaactcgctg	CRISPR spacer
gcgccatcatcgacgcggcccgcaccgcggtcg	Protospacer
*****.********* ********   . *..*

135. spacer 32.32|1889020|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NC_009040 (Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, complete sequence) position: , mismatch: 9, identity: 0.727

gcgccgtcatcgacgaggcccgcaaactcgctg	CRISPR spacer
gcgccatcatcgacgcggcccgcaccgcggtcg	Protospacer
*****.********* ********   . *..*

136. spacer 32.32|1889020|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047039 (Rhodobacter sphaeroides strain 2.4.1 substr. H2 plasmid pEA, complete sequence) position: , mismatch: 9, identity: 0.727

gcgccgtcatcgacgaggcccgcaaactcgctg	CRISPR spacer
gcgccatcatcgacgcggcccgcaccgcggtcg	Protospacer
*****.********* ********   . *..*

137. spacer 32.32|1889020|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015213 (Rhodobacter sphaeroides strain MBTLJ-13 plasmid b, complete sequence) position: , mismatch: 9, identity: 0.727

gcgccgtcatcgacgaggcccgcaaactcgctg	CRISPR spacer
gcgccatcatcgacgcggcccgcaccgcggtcg	Protospacer
*****.********* ********   . *..*

138. spacer 32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LN831788 (Streptomyces leeuwenhoekii strain type strain (C34 = DSM 42122 = NRRL B-24963) plasmid pSLE1, complete sequence) position: , mismatch: 9, identity: 0.727

gccctgtccgccgtcctcgccgccaacccgatc	CRISPR spacer
gccctggccggcgtcctcgccgccgtgctgtag	Protospacer
****** *** *************.  *.*   

139. spacer 32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 9, identity: 0.727

gccctgtccgccgtcctcgccgccaacccgatc	CRISPR spacer
gccctgtccgccgccatcgccgccggacttccc	Protospacer
*************.* ********.. *.  .*

140. spacer 32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.727

gccctgtccgccgtcctcgccgccaacccgatc	CRISPR spacer
gccctgttcgccgtcctcggcgccgttgccgtg	Protospacer
*******.*********** ****. . * .* 

141. spacer 32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 9, identity: 0.727

gccctgtccgccgtcctcgccgccaacccgatc	CRISPR spacer
gccctgttcgccgtcctcggcgccgttgccgtg	Protospacer
*******.*********** ****. . * .* 

142. spacer 32.57|1890545|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014510 (Burkholderia sp. PAMC 28687 plasmid 3, complete sequence) position: , mismatch: 9, identity: 0.727

tcgatacatatgccgatgtcgtcgcggataaca	CRISPR spacer
tgaaagtcgatgccgatgtcgacgcggatgaca	Protospacer
* .* ..  ************ *******.***

143. spacer 14.2|314345|34|NZ_CP040505|CRISPRCasFinder matches to NZ_CP014308 (Burkholderia sp. PAMC 26561 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

gatcacctgcagcgcatcaaggaactcgaagagc	CRISPR spacer
caggaccggcggcgcatcaaggaactcgagcgcg	Protospacer
 *  *** **.******************. .  

144. spacer 14.2|314345|34|NZ_CP040505|CRISPRCasFinder matches to NZ_CP014309 (Burkholderia sp. PAMC 26561 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.706

gatcacctgcagcgcatcaaggaactcgaagagc	CRISPR spacer
caggaccggcggcgcatcaaggaactcgagcgcg	Protospacer
 *  *** **.******************. .  

145. spacer 14.2|314345|34|NZ_CP040505|CRISPRCasFinder matches to MN393079 (Salmonella virus VSiA, complete genome) position: , mismatch: 10, identity: 0.706

gatcacctgcagcgcatcaaggaactcgaagagc	CRISPR spacer
aaggagatgaagcgaatcaaggaactcgaagccg	Protospacer
.*  *  ** **** ****************   

146. spacer 14.2|314345|34|NZ_CP040505|CRISPRCasFinder matches to MH424444 (Salmonella virus VSiP, complete genome) position: , mismatch: 10, identity: 0.706

gatcacctgcagcgcatcaaggaactcgaagagc	CRISPR spacer
aaggagatgaagcgaatcaaggaactcgaagccg	Protospacer
.*  *  ** **** ****************   

147. spacer 18.1|512098|31|NZ_CP040505|CRISPRCasFinder matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.677

gatctactcggctggcctggctgctttgcgt	CRISPR spacer
tggaaactcggccggccaggctgctttgtac	Protospacer
 .   *******.**** **********...

148. spacer 26.2|1211814|34|NZ_CP040505|CRISPRCasFinder matches to CP017041 (Propionibacterium sp. oral taxon 193 strain F0672 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

atgtgctcggcttgttgccagtcctgcaatgccg	CRISPR spacer
agcgcctcggcttgtggacagtcctgcaagcagg	Protospacer
*    ********** * ***********    *

149. spacer 27.1|1228330|30|NZ_CP040505|CRISPRCasFinder matches to MW042808 (Klebsiella phage 066056, complete genome) position: , mismatch: 10, identity: 0.667

tgtgctgtcttctgcggcttcgctctcagt	CRISPR spacer
gtcatcgtcttcttcggcttcgctctcgtc	Protospacer
  ....******* *************. .

150. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to KC691254 (Mycobacterium phage Breezona, complete genome) position: , mismatch: 10, identity: 0.667

tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
gtgggcctgcgcctgcgcctgcgggaggta	Protospacer
  ****** **************..  .  

151. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to MK937600 (Mycobacterium phage Wigglewiggle, complete genome) position: , mismatch: 10, identity: 0.667

tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
gtgggcctgcgcctgcgcctgcgggaggta	Protospacer
  ****** **************..  .  

152. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to MN586030 (Mycobacterium phage BobsGarage, complete genome) position: , mismatch: 10, identity: 0.667

tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
gtgggcctgcgcctgcgcctgcgggaggta	Protospacer
  ****** **************..  .  

153. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to MN703406 (Mycobacterium phage Gabriela, complete genome) position: , mismatch: 10, identity: 0.667

tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
gtgggcctgcgcctgcgcctgcgggaggta	Protospacer
  ****** **************..  .  

154. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to MH834600 (Mycobacterium phage BigCheese, complete genome) position: , mismatch: 10, identity: 0.667

tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
gtgggcctgcgcctgcgcctgcgggaggta	Protospacer
  ****** **************..  .  

155. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to KC661276 (Mycobacterium phage Winky, complete genome) position: , mismatch: 10, identity: 0.667

tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
gtgggcctgcgcctgcgcctgcgggaggta	Protospacer
  ****** **************..  .  

156. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to NC_022071 (Mycobacterium phage Crossroads, complete genome) position: , mismatch: 10, identity: 0.667

tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
gcgggcctgcgcctgcgcctgcgggaggta	Protospacer
  ****** **************..  .  

157. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to MF185730 (Mycobacterium phage Miley16, complete genome) position: , mismatch: 10, identity: 0.667

tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
gtgggcctgcgcctgcgcctgcgggaggta	Protospacer
  ****** **************..  .  

158. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to KU997639 (Mycobacterium phage Loadrie, complete genome) position: , mismatch: 10, identity: 0.667

tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
gtgggcctgcgcctgcgcctgcgggaggta	Protospacer
  ****** **************..  .  

159. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to MN703410 (Mycobacterium phage Itos, complete genome) position: , mismatch: 10, identity: 0.667

tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
gtgggcctgcgcctgcgcctgcgggaggta	Protospacer
  ****** **************..  .  

160. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to MH779511 (Mycobacterium phage LilDestine, complete genome) position: , mismatch: 10, identity: 0.667

tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
gcgggcctgcgcctgcgcctgcgggaggta	Protospacer
  ****** **************..  .  

161. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to NC_015584 (Mycobacterium virus Faith1, complete genome) position: , mismatch: 10, identity: 0.667

tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
gtgggcctgcgcctgcgcctgcgggaggta	Protospacer
  ****** **************..  .  

162. spacer 32.6|1887433|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 10, identity: 0.697

tccatgtatcggggatcgcgcgcgcatcgggtg	CRISPR spacer
gcagcgtatcgcggatcgcgcgcgcgtcgccgc	Protospacer
 * ..****** *************.***    

163. spacer 32.12|1887799|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041653 (Streptomyces sp. RLB1-9 plasmid pRLB1-9.1, complete sequence) position: , mismatch: 10, identity: 0.697

acccgcacgaggtggagcgtgctgccccctgtg	CRISPR spacer
acccgcacgcggtgcagcgtgctggcggtcagc	Protospacer
********* **** ********* *  ...  

164. spacer 32.14|1887921|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NC_020062 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence) position: , mismatch: 10, identity: 0.697

gcgatcgccacagccgtcggcgtcatcatggcc	CRISPR spacer
ttgtccgccactgccgtctgcgtcatcatatag	Protospacer
 .* .****** ****** **********.   

165. spacer 32.30|1888898|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041653 (Streptomyces sp. RLB1-9 plasmid pRLB1-9.1, complete sequence) position: , mismatch: 10, identity: 0.697

agtgcgccggtgatcttgtcggcgccgatcgca	CRISPR spacer
tcggcgtcggtgatcttgtcggtgccgtagtcg	Protospacer
   ***.***************.****    *.

166. spacer 32.30|1888898|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024936 (Paraburkholderia graminis strain PHS1 plasmid pPHS1_P, complete sequence) position: , mismatch: 10, identity: 0.697

agtgcgccggtgatcttgtcggcgccgatcgca	CRISPR spacer
tcgacgccgatgatcttgtccgcgccgaccatc	Protospacer
   .*****.********** *******.*.. 

167. spacer 32.30|1888898|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016617 (Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.697

agtgcgccggtgatcttgtcggcgccgatcgca	CRISPR spacer
tcgacgccgatgatcttgtcggcaccgaccatg	Protospacer
   .*****.*************.****.*...

168. spacer 32.30|1888898|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NC_009620 (Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence) position: , mismatch: 10, identity: 0.697

agtgcgccggtgatcttgtcggcgccgatcgca	CRISPR spacer
ctcgaagtggtgatctggtcggcgccgctcgcg	Protospacer
  .* . .******** ********** ****.

169. spacer 32.40|1889508|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NC_015583 (Novosphingobium sp. PP1Y plasmid Mpl, complete sequence) position: , mismatch: 10, identity: 0.697

gtcaaggtctccgtcgtcgcgaacacgaagcaa	CRISPR spacer
ttgcaggtcttcgtcttcgcgaacacgagcgct	Protospacer
 *  ******.**** ************.    

170. spacer 32.45|1889813|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022849 (Bosea sp. ANAM02 plasmid pANAM02, complete sequence) position: , mismatch: 10, identity: 0.697

atcaagaagcccaggccgccgccacgctcgcgc	CRISPR spacer
tgcgcagagcccaggccgccgccgcggtcgctt	Protospacer
  *. ..****************.** **** .

171. spacer 32.48|1889996|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020385 (Rhodovulum sp. MB263 plasmid pRSMBA, complete sequence) position: , mismatch: 10, identity: 0.697

gccctgtccgccgtcctcgccgccaacccgatc	CRISPR spacer
atgggcacggccgtcgtcgccgccaacccgttc	Protospacer
..     * ****** ************** **

172. spacer 32.52|1890240|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047178 (Rathayibacter sp. VKM Ac-2759 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.697

ggagccggggcgggcttctcctccgtcttcttc	CRISPR spacer
ggggccggggcgggcgtctcctccgctgcgcga	Protospacer
**.************ *********.. . .  

173. spacer 32.63|1890911|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NC_015314 (Pseudonocardia dioxanivorans CB1190 plasmid pPSED01, complete sequence) position: , mismatch: 10, identity: 0.697

atgatgacggccccggccctgcggtaccggcga	CRISPR spacer
tccgaggcggccccgggcctgcgggaccggctc	Protospacer
 . . *.********* ******* ******  

174. spacer 32.63|1890911|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020697 (Sulfitobacter sp. D7 plasmid p3SUD7, complete sequence) position: , mismatch: 10, identity: 0.697

atgatgacggccccggccctgcggtaccggcga	CRISPR spacer
gcaactccggcccctgcccttcggtaccggctt	Protospacer
...*.  ******* ***** **********  

175. spacer 9.26|228067|37|NZ_CP040505|CRISPRCasFinder,CRT matches to KX752698 (Mycobacterium phage Tonenili, complete genome) position: , mismatch: 11, identity: 0.703

cgatcggcacgccctacgtatggggcggcgtcgacgt	CRISPR spacer
agatcggcaagccctacgtctggggcgcgaccggacc	Protospacer
 ******** ********* *******  ..**.  .

176. spacer 9.78|228069|37|NZ_CP040505|PILER-CR matches to KX752698 (Mycobacterium phage Tonenili, complete genome) position: , mismatch: 11, identity: 0.703

cgatcggcacgccctacgtatggggcggcgtcgacgt	CRISPR spacer
agatcggcaagccctacgtctggggcgcgaccggacc	Protospacer
 ******** ********* *******  ..**.  .

177. spacer 14.2|314345|34|NZ_CP040505|CRISPRCasFinder matches to NZ_CP039925 (Agrobacterium tumefaciens strain CFBP7129 plasmid pAtCFBP7129b, complete sequence) position: , mismatch: 11, identity: 0.676

gatcacctgcagcgcatcaaggaactcgaagagc	CRISPR spacer
cgcctcctgcagcgcgtcaaggaactggacccca	Protospacer
 ..* **********.********** **     

178. spacer 22.2|712799|34|NZ_CP040505|CRT matches to NZ_CP026517 (Deinococcus sp. NW-56 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

gccctagcgcttggcggcgccgtcagcgccaaca	CRISPR spacer
attccagcgcttggccgtgccgtcagcgctggag	Protospacer
...*.********** *.***********... .

179. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to MF140422 (Mycobacterium phage Nicholasp3, complete genome) position: , mismatch: 11, identity: 0.633

------tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
gcgggcctgcgcctgcgcctgcgcctgcgg------	Protospacer
      . * **** **************.      

180. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to MN586052 (Mycobacterium phage Kahlid, complete genome) position: , mismatch: 11, identity: 0.633

------tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
gcgggcctgcgcctgcgcctgcgcctgcgg------	Protospacer
      . * **** **************.      

181. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to NC_023732 (Mycobacterium phage Rumpelstiltskin, complete genome) position: , mismatch: 11, identity: 0.633

------tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
gcgggcctgcgcctgcgcctgcgcctgcgg------	Protospacer
      . * **** **************.      

182. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to NC_031124 (Mycobacterium phage Gardann, complete genome) position: , mismatch: 11, identity: 0.633

------tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
gcgggcctgcgcctgcgcctgcgcctgcgg------	Protospacer
      . * **** **************.      

183. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to MF185728 (Mycobacterium phage Finemlucis, complete genome) position: , mismatch: 11, identity: 0.633

------tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
gcgggcctgcgcctgcgcctgcgcctgcgg------	Protospacer
      . * **** **************.      

184. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to KX580962 (Mycobacterium phage Wilder, complete genome) position: , mismatch: 11, identity: 0.633

------tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
gcgggcctgcgcctgcgcctgcgcctgcgg------	Protospacer
      . * **** **************.      

185. spacer 27.4|1228534|30|NZ_CP040505|CRISPRCasFinder matches to KX580961 (Mycobacterium phage Zakai, complete genome) position: , mismatch: 11, identity: 0.633

------tggggccttcgcctgcgcctgcgaatcagt	CRISPR spacer
gcgggcctgcgcctgcgcctgcgcctgcgg------	Protospacer
      . * **** **************.      

186. spacer 32.30|1888898|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 11, identity: 0.667

agtgcgccggtgatcttgtcggcgccgatcgca	CRISPR spacer
ttcaggccggtgatctcgtcgccgccgatgcgg	Protospacer
  .. ***********.**** *******   .

187. spacer 32.30|1888898|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 11, identity: 0.667

agtgcgccggtgatcttgtcggcgccgatcgca	CRISPR spacer
ttcaggccggtgatctcgtcgccgccgatgcgg	Protospacer
  .. ***********.**** *******   .

188. spacer 32.32|1889020|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045378 (Sulfitobacter sp. THAF37 plasmid pTHAF37_f, complete sequence) position: , mismatch: 11, identity: 0.667

gcgccgtcatcgacgaggcccgcaaactcgctg	CRISPR spacer
agaatatcgtcgacaaggcccgcaaactcggca	Protospacer
. . ..**.*****.*************** ..

189. spacer 32.32|1889020|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134465 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence) position: , mismatch: 11, identity: 0.667

gcgccgtcatcgacgaggcccgcaaactcgctg	CRISPR spacer
ccgccgtgatcgacgaggcgcgcaaggcgaagc	Protospacer
 ****** *********** *****. . .   

190. spacer 32.32|1889020|33|NZ_CP040505|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021432 (Yoonia vestfoldensis strain SMR4r plasmid pSMR4r-1, complete sequence) position: , mismatch: 11, identity: 0.667

gcgccgtcatcgacgaggcccgcaaactcgctg	CRISPR spacer
agaatatcgtcgacaaggcccgcaaactcggca	Protospacer
. . ..**.*****.*************** ..

191. spacer 5.2|98409|32|NZ_CP040505|CRISPRCasFinder matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 16, identity: 0.5

---------tgcccgggcatcatgcccgtctccacaccaga	CRISPR spacer
gcccgtgtggggacgggcatcatgcccagcag---------	Protospacer
          *  **************. *           

192. spacer 5.2|98409|32|NZ_CP040505|CRISPRCasFinder matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 16, identity: 0.5

---------tgcccgggcatcatgcccgtctccacaccaga	CRISPR spacer
gcccgtgtggggacgggcatcatgcccagcag---------	Protospacer
          *  **************. *           

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1478075 : 1511567	30	Bodo_saltans_virus(16.67%)	protease,transposase,integrase,tRNA	attL 1472361:1472375|attR 1486213:1486227

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP040505|1478075:1511567|DBSCAN-SWA
CTTAGAACACGTCTACACCACGCGGGAGGCGGACCAGATCGAGGGCATTTCCGAGTGAGCAGCAGAAAGGAAATGCGGACACTTTTTGGAGTTTTCTCTTGTTTTGCGCCACTCGTGCGTGGCGGTATTGGGTTGGGCTTTTTCCTCCGAGGGTGAGTTTGATTCTGCATTCGTTGTAAAAGCAGATGTGCTCATCGATAGCGTGGGCAAGTTGTTCGGGCGTTTGCCAGGGTTTTCCGTAGTGCATTTCAACTTTGCGTCTACCGAAGAACCCTTCGCAGGCCGCATTATCTGGGCTGCAACCTTATTTGGACATGAAACGTGCGATGTTGTGCTTGGCTGTTAAACCTAGCCAGGCACGGCCGCGGTAGTGCACTCCACGGTCTGAGTGAAGTGCGAGAGAACCATCCGCGCGAGGGTAATGTTTTTCACAAGCTTGAAGCAGAGTATGTTCTGCCAGATCCATCGTTGGGCGGATGCTGGTTTGGTATCCCACTAGCATCCCATCGAAACAATCTCTGATGGTCGACAGATATAAACTGCCCTTGTCGGTGGCGAACACGCTGATATCGGTCAACCATAAAAAATTGGGTACTGGGGCGTGGAATCGGCGTTGGACGACATTGTCAGATCCTGAAGATACTTCTCCTTGATCACTGGAGTATTGGCACTTCTTCTTAGAGCGACGAACTTCTATATCTTCTTAGGCCATCACGCGGCATACGAGTCTTTCGCTGACACGAAAGCCTTCTTCTTTGAAATCAAGCCGAATTCGCCGATACCCATACGTGTGAAAGGAATCTCAGGAAATGCGGAGGATCGGGTCGCGGAGGTAAGCATACTTATCAGGAGCATTCATCGCCTCGCGCTGACAGTAGTAGCTCGAAGAGGAAAGCCCTGCGGCCTTCAACAGTGCAGGCAGCGGAAAAGAGGATCGAAGTGCGTCAACCACGCAGGTTCTATATTGATTGCTTAACTGTCCGAGGATGACGCTGACCTCTTCTTTTATCAACTCAACCTCACCTTCAAGCATTGCCTTATCAAGCAACAGTTGAGCAGCTAATTGCCGTAACTGTTCTGGTTCCTCCGGTAAAACAGCCTCTAGAGACCCACGTGTGAGTAGAGCACGCTCAGCTTCACGTTATTTCTGACTCATCAAAGCCCACATCCCTTCTACACGATACTTTTGAGCCCAAACATAAACGCTTGTTTCCGAATGCACCCCACATTTGCGAGCAATATCATCGACGCGTTGGCCTGCCTCGCAGAACTCAACGGCACGCAACTTGGTGTCCAAGTCATAATAATGACGCCCGCAGGCCTGCTTTCGCAGGCTTCCTACCCCGCTTAAACTCACGCAACCACTTGTACGACGTCCATCGCCCGGAAAAACCCAACTCACGGACAGTCTTAGTTACCGAACGAGTACGGCGATACACACGCAGCGCCAACCGACGCTGCTCATCCGAATACACAACTTTCACGAACAAAAACCTTCCAGGATTCCGTCCGCATCCCCTTTTGGGGATACCGGCAAGGAAGTGTGGCATCGACCCGGACTTTTCGTTGATCTGACCGCGTAAAGTCGCGTTCCCCATAGGGGTGGGGCCTATATGAGCGGGTGAGTGTTGACAAGCGCCCCAAGTGCCCGATCTGCCGAGCGCCGATGAACGCGAACGGGAAAACGTCTTCTCGTACGCCCCGGTGGCGTTGCCGGAACTGCTCATTCTCGACAGTTCTCAAGCGCCCTGACGTAACTCGCCGCCACGACCTGGAAGCATTCATCAACTACGCGACCGGCAAGACCAGCCAAGCCGAACGCGACGGCACACTCACCGGCCGATCCTTCCGCCAGCGCACCTCGTGGTGTTGGCAAGTCCCACCACCCCTCCCAGTCATGGACGGCGTCATTCATGACCAGGTGTTCATTGACGGGATCTTCCTTTCCCACTCCTGGGTCATCCTCATCGCCACCGACGGGCGCACACCGTTGAACTGGGTTACCGCCGGACGAGAAAACGCTACGGCCTACACCCAGCTCCTCAGCCCACTTCCCCCACCGGGCATCATCACTACCGACGGGGCAGGCGGCGCCCTGGCAGCGATCCGCACCCTGTGGGGACCAGACCAACCGGTCCAACGCTGCCTCGTGCATGTCCACCGCAACAACACCGTGGACCTGACCCACAACCCCCACACGCCCGCCGGGAAAGCCCTCAAAGGCCTGTCCCATTCCCTCTTGCGCGTCACCACCATGGATGAAGCCGCACACTGGGCGAGCCTGCTCGCCGCCTTCCACACCGAATACGCCCACTACCTCAAAGAACGCACCTACGCGTCCCAAGACCCCGAAAAGGCAGCAGCCACAGGCAAGAAATGGTGGTACACCCACGAACGCGACAGGCGCGTGTACTACCGGCTCGAACGCCTCCTCAAGAACAAACAGCTCTTCACATTCCTCACCGACCCTGGCCGACCAAACCTCGCATCCACCACCAACCCCATCGAATCCCTCAACGCTCAAATCCGCGCCCTACTGCGCGCCCATGCAGGCTGGAACACGACTCGCCAAATCACCGCAATTCACTGGTTCCTCGCCCACCACCAACACCCCATCAACGCCGCCACAGTGCTCGCCGAATGGGACAAACACGCCAGGCAACCCCACACGATCATCCCCACAACACACAAACAACAACCCCGGCCAGACGGGCCCACACACTACGACAACGCCTACAGCCCCGACACCGGCTTCCACACCCGAAAAGGCTGGGCCGGACGCACATAACCCCCACGACACGCCCGAGCGATGCCACACTTTCCTGCCGGTAAACCCCGGCCAGACGGGCCCACACACTACGACAACGCCTACAGCCCCGACACCGGCTTCCACACCCGAAAAGGCTGGGCCGGACGCACATAACCCCCACGACACGCCCGAGCGATGCCACACTTTCCTGCCGGTAACCCACATAACCCCCACGACACGCCCGAGCGATGCCACACTTTCCTGCCGGTAACCCCCCTTTTGTCCTATACCAGGAGTGCGCAGCAGCGTCGAGGCAAAGTAAAACCCGGCGTCTCATTGATTTCTCAGTGAGATACCGGGTTCTTCAGTAGCGGGGACAGGATTTGAACCTGCGACCTCCGGGTTATGAGCCCGGCGAGCTACCGAACTGCTCCACCCCGCGTCGGTGACTACTACTGTAGCCCTCCGCTTCGTCAGCTTCAAACTGACAGCGGTGACCTTGGTCATGGTGAGGCCTCAGATTCTGCCCGCGAAGTGGGAATAGGAAGGAAAGGGAAAGGGAAGGAACGGCCCCGCACCGAAACGATGTCGATGCGGGGCCGAGCTTCACCTTTCAGGCAGGGTCTCCGGAAAGCAGGCTCCCTCTCTCTGCAGGCTCACAGTCCGCAGACTTCAGGAAGCAGCATTGCCGCTCCGCCGCCGAACCTCAGGACGCAGGCGCTGCCGTTCCAGGAGTCCCACTTCCTGAACCGGAAGCTCCGTTTCCTGCGTGAGAACCCGCACCAGAAGTCCCACTTCCTGCCGGAGAAGAAGACGCACCTCCGGAGAGTTCTTCCTCAGCGGCGAGCGCCGCCTCCAGCGCCGCATCGAGCGCCTTCTGGGACTCCCCATAAGCGGCCCAGTCACCACTCGCTAGAGCACTCTTCCCGGCCTGCATCGCTGCGGAAGCATTCGCCAACGCCTGGCTGAGCTTTTCTTGTGCACTCAACGGGGCAGCGGCCCCGCCCTCGCCGCCCTCGCCCCCGTTGGCACCTTCAGCGCCGGAAGCGGCATCGGTCCCCGCCACAGTCGCCTGCGAATCGCCACCGAAAGTCTGATCCAAAGACTCTTCCAGAGTCGGAGCGAAACCGACCTGATTGCCGAAAGCCGTCAGGACAGAACGCAACACCGGGTAGGAAGCAGACCCCGTGCCCTGAACGTAAACGGGCTGAACGTAAAGAAGACCACCACCGACGGGCAAGGTCAAAAGATTGCCTCGAATGACCTGCGAATCCGCCTGATTCAACAGGTTCAACTGCCGAGCGATCGTCTCATTCGAATCGTAAGCGTTCTGAACCTGGCCAGGCCCAGGAACCGTAGTCGAAGACGGCAGGGCCAAAAGGCGGAGCTTTCCATAACCCTCACGGATCTTGCCGGCCTCATTGCCCGTCTCCGAATCGACCGCCAAGAAGCCCGCCATGGCTTCCCTCTTCGACTCGCCGCCCGGCACAAACACCGAGGTCAAAGAGAACTCCGCCGTCTCCTGGGTCGGCATCTGCATCGTCAAGTAGTACGGGGGCTGCGCAGAAGCGGGCGCTCCCGTCCCCTTAAGCTCAGGAGAGGGTGTCACCACGGTGGAAGTCTCTTCCGCGAGTCGCCAACGGTCGCCACCGGCGTAGAAGTCAGACGCATTCTTCACGTGGTAGCTGGTAAGAAGCTCGCGCTGAACCTTGAACAGATCCTCCGGGTAACGCATGTGGCTCATGAGATCACCGGAAATCTGGCTCAACGGTTCAACCCGCTCGGGGTAGATCTTCATCCACGTTTGAAGGATCGGGTCCTCCTGATCCCACTGGAAGAGGTGGACCGAACCGTCGTAGGCGTCGACAACGGCCTTCACCGAGTTACGGATGTAGTTGACGGACTCGCTGCGCACATACTCCCCGACCTCGGAAGATTGTGAATCAACAGTCGTCTCCGAGAGCGACTCATGCTGCGAATACGGGTAGTTATCCGTCGTCGTATAGGCATCGACAATCCACACAAGACGCTTCGGCGTCGCAGGATCATCATCCATATCCACAACCGCCGGGTAGGCCTCCTGCTCAAGAGTGAGGAACGGCGCGAGCTTCGCGACACGGTCCAGCGGATCACGGTTGTAGAGGATCTGCGAGGCCGAGTTCGTTTGCGAAGAGAAGAAGATATCCGTCGAGCCGAACTTGATCGAATACAGGAGCTTGTTCCACATATTGCCCACACTCGGACCGCCATCGCCGGTGAAGGTCGTCGCAACCTGGCCACCGTTCGCATTGTCATCCGGGTAGTCGAGTTCTTGCGGCTCACTGCCCTCGGGCGCACCCACAATCGAATAGGTGGGAGCATCCGGCGAGAAGTAGACACGTTCCTCATAATCGCCCATCTCCCCGATTGAGGGGACCGACTGCTCCCAATACGAGGGCAAGCCGTCACGGGTCAGCGTGTTGCCATAAGCGGCGACAACGCCATAACCATGGGTGTACACCGTGTGCATATTCACCCAGGTCCGCTGTTCGGCCGACAATCCGGCGAGGTTGATCTCACGGACCGCGATCACTGTGTCGCGCCGCTCATCGCCGATCGTGTAACGGTCGACCTTCATCCCAGAATCGAAACCGTAGTAGGGACGCGACTGCTGGAGCTGCTGAACAGTCCTCGTGATGACCTGCGGGTCGAGGAGTCGGATCTGCGAGGTCGACTCTGAATCCTCGCGCAACTGGCCCGGCTGAGCCGTGGTCGCTGCATCGTAGTTCGTGTACTCCAAATCCGCGAGCCCGTACGCCTCCAGGGTCGCGTCGATATTGTGCTGGATGTACTCCGATTCAAGCGCCCGCTCATTCGGGGTGACGCGGAACTGCTGGATGAGCGCCGGGTACATTCCACCAATGACGAGGGCGGACACGATCGTGACGGAAACACCGATGACGGGCAGGCGCCATGTTCCCTTGAAGGCCGCAACGACGAAAAGGACCGCGACGAGGACCGAGATGACGGCGAGGATCGAATGCGCAGGAAGAGTCGCCTTGATGTCGGAGTAGAGGGCGCCGTCAATTGAAGAACCGCGCTGCGTGAGGAGCGCGTATCGGCCCAGCCAATACCTCGCGCCAATGAGCAGGGAGGCGAAAGCCGTGAGGAGGCCCGCCTGAAGGCGCGCGGGCTTCGACGCGTGAGGACGCGGCGTCATGCGGATCGTGCCGTACAGGTACGAGACAACCAGGGAGGCGATCAGACACAGGACCGTGATCTTGAGGAGGAAAGAGACGAGCAGCTGCAGAAGCGGCAAGGTGAAGACGAAGAAGGAAATGTCGAGACCGAACTGCGGGTCCGTCTTGCCGAAGGAGGTGCGGTTCACGAACTGGAGCACCGTCTGCCACTCCGTTGCCAGATTCGCACCATTCGTGAAGCCGAAGAAGAGGGCCGCACCCCAAAAGCCCACTCGACGCACCGGTTCGAAGGCCCGCTGGTATTCACGTAGGCTCGCGGAGGCTTCTCCCCGAGTCGAGGCGGCGCGGTGCTTATACGCGTACTTCACAGTGAGGATGAGCATGGCGGCGACGAGCATCAAGCCGATGAGGAAGAGTCCCGCATGCGCGAACCACTGAGTCAGCAGGACGCGAGTCGACTGCATCTGCCGGAACCAGAGAATCTCAGTCCAAATGCTTGAGGCTGCATAGACGACAAGGCCGATCGCAATGAGGATCGCGATGGTGATGGAACCGGGTCCAAAACCTCGATGCCCGGTCTTCCCCTGTCCTTCGCCGCCCCCGGAAGGGCGCCTTGGGAAGCGAGGTGGGCGCGGAGGTTTCGGCGGTTCGAATCGCCTCGGCTCTTCCGGCTCGAATCGGGGCATCGAGAATTCACTCACGAGGTCGCTCCTCAGCGTCGACGATGATGAAGCCATCCTACCGATCGCTTGGCCCAGCGCCCGTCGTGAGACGATTGGCCCATGACGATTGAGAACTCCTCCGATTCCCCGCTCGACTCCTCATGCGATTCCTCACTGCCGAGCTCGCGCCAGATCGCCCTCGCGAATGTGGTGGTTGATATTGAGAAGACGGCGGCTCGGCTCGGCTGGGACCACGCGCCCTCCCTGTACGCCCTCGTTGCGACGCGCACCCTCTTGGATCAGCCCGGCCTTCCCGCCGACATCGCCGCGCAAGTGCGCAAGGGGTGGGATGGTTCCGAGGAGCACCTGTCCGCGATCGTGCAAGAGGACCTCGCCGAGGACGAACTTGAGGAGATGCTCGCCCGCCTCGCTTGGCCGCCCCAGGTCCAGGGCGCGGCTTTGACGGTGGAACGCCTCGTTGTGCCGCCCGAGGTCGAAGAGCAGGCCCCCGAAGATCCGGAGGAGGCGCTGAAGTTCATTTCGAATCACCCGTCGAGGACGGATGTGCGCCTCGCCGTCGGAGCGCTGCGCAGCGGCGAGTCCTGGTGTGCGCTGCGCACGAAAACCTTCGATTCGGATGACAAAGTCGGGCAAGGCTCGAATCTTTTGCCGAACCTCGTGGAGGCCTTGCTGCTCTCCCTCGATACTGAAGGAACTGTCGAGACGGAGGGCACTCCCGACGAGCCCAGGAGCGAGTGAGCGCGGGAGCGAGTATTCCCGGGCGAGTGCTCAAGAAGCGCCCGCGACGCTCTCGCAGCTCGTAAGCTTTCCGGTCTGACCAGCTGCGATTGCCTCAACGGCCTCGCGCGCCTCACCCAAGGTGGTGACGGCGACGACGCTCAAACCTTCGGGGACATTCCCCACGACCTCATCGCAGTTTAGAGCGGGCGCGAGAAACCACTCGCCGCCATCGCGCTTCGCGCCGTGCATCTTCTGGACGATCCCGCCGATCGGCCCGACCTCGCCGTCATAGGACATCGTTCCCGTCGCCGCGATGACATGGCCCCCGGTCAAATCCCCGGGCGTGAGCTTGTCGATAATCGCGAGTGAGAAGACGAGCCCCGCAGAGGGACCGCCCACCGATTCGAGATTCACCTGAACATCCAGGGGGAATCGGGGCGCCACATCCAAATAGATGCCGAGGCGAGAGCCCTGAGGATGAGACTCATCCGGGATCGTCTCGACTTCGAGCTCGACTTGTTCACCATCGCGCATGACGCGCAAAACGAGAACGGATCCGGCGGGAGTCTGCTTCACCAGGCGGAACACCATTGAGGCACTATCCGCAGGATGAACAACCCCGGCCTCGTCGGTAATGGACAGGAGAACATCACCATCGCGCACTTTTTCGGCAGCGTCGCTGCCCTCGGCGGCTCCGCGGATCGTCGTAGTCGCGGGCACCGTCCACCCGAGCGCTTCCAAAGCAGCAACATCGGCACTGGACTGGGAAGACTTCATCATCCACGACTGTGCGGCATCGACCTGATCCATCGTCACCCCATCCGGATAGGCCGTGGAATAAGGAGTGAGCTGCGAAGTCTCGGACAAACTCGCATTGATGAGCTGCACGAGGTTCAAACGCCTACCGGGGCCGCCCTGCTCAGAGACGGTCACCATCCTCAGTTCCCCATTGCCATCGCCCTTCTCATGGGCGGCATCGACGTGGAGTGCTCCGCCGTTTGAAGGGTCAACACCGGAAACGGAGAGCATTTCCTTTCCCCTGTACGAGCCGCCCACATCGAAAGTCGGCCCCGGAGACTCAACGACATAAGGCATGGGAACAATGAACAAGACGGCGCCGAGCACGAGCGCAACCACCCATGAAAGGAGAGTCCGGACCCGGATCTGCAAGGGCTTGGCAGTGTCCCAGCGAGAAAGCCAGGTTGAAGGCTCCCGGGTCGAGGGTGTCAGGGGCGACGGCTGTTCACTCACTGGCCCATTCTCGCGCGCAACACTCGAATCCGCGCAATGAACTTTTGCTCAGAGCGCACATCCACGAATCATCCAGCCCGCATGCGCATTGAGCGAGTAGCGTGGAAGCATGAACGAGGACGAGACCCCCGGCCCCAGCCCCTTCGATGACTTCCTGCGCAAACTCCTCGGAGACGAAGCAGCCGAAGAGGCGAGCCGCGCGATGCGCGCTCAAGGCTTCGACCTGTCACAACTGCCGGAAGGCTTTTCCGATCCGGCGGCGATGAAGGCCGCTGCCAACCAGTTCCAATTCCTCATGGACTCAACGACAGGCCCCGTCAATTGGAGGCTCGTCACTGATTCTGCGCACCAGCAGATCTACACCAAGGGAGATCCGGCCCCAAGCGCCGCGCAAGCGGATCGGGCGCGCACCGCAATGACGGTCGCTGACCTGTGGCTCGACACGACGAGTGATTTCACTCCCGGGAGTGTTGAACGCAAGGTGTGGACGCGAAGTGAATGGGTCGACGCGACCCTCGACACGTGGAAACGCATCTGCGAACCGGTCGCCGCGAATGTTTCGCGCGCCCTCGGCGAAGCCCTCGGCTCGCAGTTCCCCTCCGAAGCCATCGGCGAGGAGGATCTGCCGTCCGGATTCGCGCAGATGATCGACCAGACGCGCTCCATGATGCCCAAGCTTTCAGCCATGATGTTCGCCGCTCAGATTGGGCGCGCACTGACCGCCCTCGCCTCCGAAGCCCTGGGGTCGACGGATGTGGGCATTCCCCTCGCGAAGGGGCCGACAACGGGGCTCGTCGTGTCGAATATCGAGGCTTTCGGCGATGGGCTCGACATTCCCTTCGATGAGGTCCTCCAGTTCGTTGCCGTCCGTGAATGCGCGCATCGGCGCCTCTTCGCCTCCGTCCCCTGGCTCGAGGGCGACCTGATCCGCGCGGTCGAGCGCTACTCGGCGAACATCGAGGTCGACATGACCGCGATCACGGATGCGGCGAGTCTTGTCGACCTCTCCGATCCTTCATCCATCGACCAGGCCCTCTCTGGCGGCGTCTTCGAGTTGAGCATCTCCGCCGAGCAGAAGCGTGCCCTTGAGCGCCTCGAAACGATCCTCGCGCTGATCGAGGGGTGGGTCGAGGTCGTCACCGCCCAGGCGATCGCGCCCTATCTGCCGCACGCGGATCAACTCCGCGAAATGATGCGTCGGCACCGCGCCTCAGGCGGGCCCGCCGAGCAGGTCCTCGGTACCCTCATCGGTTTGAAGATGCGTCCGCGCCGCGCCCGCGATGCTGCGAAGATTTTCACCCTCGTCGAGGCCGAACAGGGAACCGAAGCTCGCGATGCTCTCTGGTCGCACCCGGATATGGTGCCGAGCGCTGCAGAACTCGATTCTCCCGACACTTTCCTCACGATCCGCAGGGCCGCCTTGGAGCAGGATGCTGATATCGACGCCGCCCTCGATGCGCTCCTGGCCGGCACAATGGGCTGGGCTGAGGGCCTCACCCCTGAGGTGGATCCGGAAGCAGAGACTCTGGCGAAAGCGGGCTTGGCTTCCCTCGAAGATCCTTGTGCCCAGCCCACAGAGGACGAGGCTCAACAAGAGGGTATAGAAGATGACGCTGATTCTGCCCAAAGCGATGACACGCCCCAGGAGCACTAAGAGAGATGCCCCGACAGAAGGGGTTCCTTGAAAGGAGAATGCTGCAGGATCTGCGCCGAGCAGCCTGGGAGCGCGGATCGTGGCCGGGTGATCTGATCCGGCTGTGCTCAAGCTGTGGATAGCCGCCACGCGCCCTCTTCACCGCCGATACTCGTCGAGGAGAAGACATCAACTCGAGCCGAAGGGGCTCGGCGTATGAGGAGGCACGCATGAGGCTGAGCACCACCCCCACGGTTCTTCGACGAGGCCCCGGCGCCCGTCAGATCGGCACAGACCCGGGCCGCAGCCTCGGATTCACAGGACTCGAGGAGCTCGACGCCCTCGGACTTGATGAGCTGGGGCGAAGAAGTGAAGGCCGCGGCCACGGACTTCCCTTCCTGCCCGGCCGGGTGCGAACGCGTCTGCTCGCCGCCGGACTGCTCGCAGCCCCGCTCCCCCGCCTCGGGATTCGCCTCGTACAGCCCAGTGTTCTCGCACTGCGCATCGTGGAGGCCTGCGCCGCGCATTTTGAGATCTGTCTTGAGATCGCTGGGCAGACGACCTCGAAACCCCTGGCTGAAGAACTCGGAGATGAATGGCTCGCAGCTCCCCTGAGCAGCGCACTCGCCAGGCGCTTTGGGCGCATCGGCGCGCCAGTACTCCTTGAGAAAGTCCCCATTCCTGATTGCGTCCTCGTGAACGCCGAACGCGGCCATGAGCCCGAAAAGATGCGCACGCTCCTCATTGAGGACATCCCTCATCTCCTGCTCACCCGCCTCGAAGAGGGCTACGAGGTCGGGCCCCTGGTCCTTCCGGGATACTCCGCATGCGCGGGCTGCGTGTCGATTGAGCGCGAGGAGAAGGACCCCTTCTGGTCGGCCGATCTCCTCTGCGCTCCACGAATTGAAGAGCCAATGCCCACAGCGGCTTCACGCTCGCCGAGAATGCCGCGCCATGCCCTCGAAGTGGCAACCCTTCTCGGGCTTGATGCCCTGGCAGCGATCACGCACCAGCACGGGCGAGCTACGAGAGTCTTCCCCGAGATCTCCTGGCTCGACCCTCATGAATCCCGCACGGGCACCATTGTCCGAGTCTTCAACGACGGTTCGAAAAGCGTCGACTACGTCTGGCCCCGGCCAGAATGCGGATGCGGTGCCGCCGGGGACCTGGGACCTGCAAGAAAGGATCTGTAAGAAAGCCCTCCTCGGGCGCAAACTCCTAGTCGAGGCCGACTTCAACATCCTCGCCCCTGACCAGGGCGAGAACCGCTTCCCCGAACATCTCCGCCTTGACCTCACCGATGCCCTTCACTGCGAGTAGTTCCCCGCGTGAGCCGGGCTGAGACAGTGCGATATCGCGAAGAGTCTGATCCGTGAAGACCGCGTACGGTGGACGACCCGCTAAGGCCGCGACTTTCTTGCGCCAGGCCTTGAGTGACTCGAAGAGGGCGAGAGCTTCCGCACAAGCGTTCTCCTCGAAGTGGCGGGCCGCCTCCTTCGCGGGCACCCTGGCATGGGCGGGAGCGGATCGGCGAGTACTTTCCTTCGGCCATATGCCCTCGAGTAGTTTCGTGCGGGTGTTCGCGCTGCGCGAGTCCTGCCCTTTGGACTTCGCCCAAGAAATGTCGAGGAGGTTCCGTGCTCGTGTGATGCCGACGTACAGGAGGCGTCGTTCTTCCTCCCGAGCTGCAGGGGTCTTCGCATAGGAGATCGGGATCAAGCCCTCGGAGGCTCCCACGAGGAACACCGCATCCCATTCCAAGCCCTTCGCCGCATGAAGGGTTGCGAGTTCCACACCCTGCTGATCGGGTTCGACCTGGTACTGGGCACGCTCCTCAAGCTCGCCCATGAAGCCAAGAAGATCCTCGGCCTGCGATTCTTCGGCCCAGGAGACGATTGCGCGCAGATTCGACCAGCGCTCCTGCGCAGCCCCTCCGCTGGGGGCTTCGTCGCTCCACCCAACAGCTTCCAAATGCGCACTCACCTGGGAGACGAGCCCGCTATCCTCACTGGCCGGAAAACGGGCGGCAGTCGATAAGACGCGAAGGGCGTTTCGCACATCCTCGCGCTGGAAGAAGGGGACAGTCCCCCTCAGGGCGAGGGGGATGCGCCGGGAGGCGAGGACTTCCTCGAAAATCTGAGACTGGCCGTTCGTGCGGAACAGGACCGCGATCGAATGGGGCTGTGTTCCTGCTGTGATGAGTGCTTCGATCTTGTCGGCCACGCCCTCAGCCTCGGCGCGTTCACTCGCATAGGTCGAGAAGGATACGGCTGCCCCGCTGGGGCGCTGGGACTTCAAACGCACCGCCCCGGATGAAGGTCCCGCGCCCGCCATCAGGCGGTTCGCGATCGACACGATTTGCGGGGTGGAACGATAGTCGCGCGTCAGTTCAAGGACCCTCGCGCCCTTATGTGCCTTCGGGAAATCCACGAGGTGGCGAGGATCTGCGCCCGCGAAGGAGTAGATCGTCTGCGCAACGTCGCCGACGACGCACACGTCATGGCGATCCCCCAGCCACAGGTCGAGGAGTCGGCGCTGCAGGAGAGACACGTCCTGGAACTCGTCAACGACGAAATGGCGGTACTGCGAACGCACCTTCGCCGCGACATCCGCCCGTTCCTGCAGCATTGCGCAGGTCATGACGAGGACGTCCTCGAAATCGATGACGCCGCGCTCTGCTTTCGCGTCCTCGTACACCTCGAGGAGTCGGGCCATGTCATCGCCGCTCATGCCTGTAGGTGGCTCATGGCCGGAGCGCACGCGCTCAAGATAATGCTCTGAATCGACCATTGAGACTTTCGCCCACTCTACTTCCGCGGCGAGGTCACGCACCATGGTCTTATCGGCGGCGACCCCCAGGCGCGCAGCTGCCGAGGAGACGAGAGAGGCCTTGTGGGGCACGATCTGCGGCAAGGGCCCGCCAATGACCGTCGGCCAGAAGTGTTGAAGCTGCCGTAGGGCCGCCGAGTGGAAGGTGCGGGCCTGGGCGCGGGGGACGCCGAGTTGGGCGAGACGATGGCGCATCTCATAGGCGGCGCGGCGCGTGAAAGTCACGGCGAGCACGGAATCGGGCGGGTAGGCGCCGATCGCGCTCCCGTAAGCGATGCGGTAGGTGATCGCGCGGGTCTTCCCCGTTCCTGCGCCCGCGAGGACGGCGAGGGGGCCCGTGACCTGGCGCGCGACTGCCCGCTGATCGGGGTCGAGAGCGTCGAGCAGTGCATCGGGCTGAAGAATCGTCATGATCGGATCATCCCATGACCCGCCCTCATCTTCGATCCTGGCGCTACCAGCCGGTGGATGAGCGCAGCCCGCCGGTCGATGAGCGCAGCCCGGCGTCGATCGGCGAGGCCGGGAGGGGGCCGCCGAACCATTCGACGAGGAGCGCGTGCGCGATTGATGCGGGCCCCGGGGCGCTGATCTGCCCCGATAGGAGCGCCGCAGCGAACTCTTCGCGCGAGTAGAAGCGAGCCTGATCGATCTCCACGCCATCCGGTTCGGGCTCGCGGGGAGCATCGGATCTGAGCTGTGCGACGAATCCCATCATCTGTGAACGCGGGAAGGGCCAAGGCTGGGTCGCACGATATTCGGGCGCCATGACTTCCAAGCCGACCTCTTCTTCGACCTCGCGGATCACAGCATTCTCGGGGGTCTCCCCGCCCTCTACAAAGCCCGCGATGAGGGAATGCCTGGCCTCGGGCCACGCGGCGTTGTGCGCGAGGAGGACCCTTCCTTCCCGGTCTTCCACACGCACGATGATTGCCGGGTCCTGACGCGGATACTCAATGTGGTGGCAGCCCGAGCATTCGCTCGCCCAGCCCGCCTGAATCGAGCGGACCGGCTGGCCGCAGCGCGCACAAAAACCTGCTCTCGCATGCCATGCGGCAAGGGAAACCAAAGGCAGGGCGAAAGCCGGATCATCCCCCACAAGACAATGCCCCGCAGAGCGCAGGTGCCTCCAGTAAACGGGCTCGCCGCTCATAAGCGATGCGAGTTCTCCCACCCGCTCGTGGATGCCCACAGTCGACAGTCCGAGGCCAATCCCCACTTCGCCCGCACTCGATCGGCCCAGGAAATACACGCCCACGCCCTCGTCAATGAGTTCGAGGGCGAGGCGCGAGTCGAGACGCACAAGACGCAAAGCAGAAGAGTCGGCTCCATCGGCGCAGGTGAGGACCACACCCCGATCTGTTGCGGCGAACACTCCGGCCCCTTCTTCCAGGGCCCTTCGAGCGTCGAAACCCTCGCGCGAGGCCACCATCGGATCGACGCTTCCACGGGCGAGAGGCAAGAAGAGACTCATGCGTCCACGCTATCCCCCTCGGCTACTCTGGTGGCCATGACTTCCACAGTTCAGCGCGCCGATGGGCGCGAATTCGATCAGCTCCGCCCCATTTCCTTGACTCGCGGATGGTCCGGCACCGGAGAGGGCTCCGTCCTCGTCGAGTTCGGGAACACCCGCGTCCTGTGCGTCGCCTCCCTCACCGAGGGCGTGCCGCGCTGGCGCAAGGGAAGCGGGGAAGGCTGGGTGACCGCCGAATACGCGATGCTCCCGCGCGCCACCTCCGAACGCTCCCAGCGCGAATCCATCAAGGGCAAGGTCTCGGGACGCACCCAGGAGATCTCCCGACTCATCGGCCGTTCCCTTCGAGCGATCATCGACGTGTCCGCGCTCGGCGAGAACACGATCGTCCTCGACTGTGATGTGTTGCGCGCAGACGGAGGCACCCGCACCGCCTCCGTGACCGGCGCCTATGTCGCCCTCGCCGAGGCCGTGCGCTGGGGCAGCGAGAAGGGGATCATCACGGCGAAGCCGGGACTCAAGGTCCTCACTGATTCCGTTTCCGCGATCTCCGTCGGCATTGTCGAGGGCGCCGTCATGCTCGACCTTCCTTACGAGGAGGATGTGCGGGCCCAGACCGATATGAACATCGTCCAGACCGGTTCGGGCGACTTCATCGAGGTTCAGGGCACGGCCGAACATGCGCCCTTCAACCGAGATGAGCTCGCTGAGCTCCTCGATTACGCGTCGATCGGCAACGCCCAGCTCGCAGATCTTCAAAAGCGTTGCCTCCAGGCGCCCGCAGGGGAGAAGGTCAGCCTCTGATGAGCGAGGAGTCGCCCCGGTCCTGCCTGGAACCGCGCCTCGTTTTTGCGACCGGGAATGCACACAAGATCAGCGAACTCGAAGCGATTCTCGCCCCCGCGTGGCAGGGCTACGCGCCCGGAACGATCGCGCGCATGTCCGATTTCAATGCGCCCGCTCCCCTTGAGGATGGCGCCACTTTCGAGGAGAACTCGCTGATCAAAGCGCGTGCCCTCGTTGAATTCACGGGCCTTCCCGCGCTCGCCGACGACTCGGGGATCTGCGTTGACATCATGGGCGGAGCGCCTGGGATCTTCTCGGCGCGCTGGTGCGGTGCTCATGGGGATGATGCGGCGAACCTGGATCTGCTGCTCGCACAGCTCGCGGACGTTCCTGGCGCGCATCGAGGCGCAGCTTTCGTGTCCGCTGCGGCTCTCGTGCTTCCCGATGGGCGTGAGTTCGTCGAACGCGGCGAGGTGCGGGGCACCCTCATAAGAGAGCGCCGCGGCGAAGGCGGTTTCGGCTACGATCCGATCTTCGTCCCCGAGGGCTACTCGCGCACGAGCGCTGAACTCAGTCCCGAGGAGAAGAACGCGATCAGCCACCGGGGCAAGGCCTTCCGCGCCCTGCTCCCGGCGATTATTGAGGCCCTGAAAGGCAAGTGAGCTCCCCGTGGGGTTCTGTTCCCCCTGTGGGGCTCTCCTTGCTTTCAGCGGGCGACGAGGGCCCCGTAGATGGGTCGGTCCATGCAGAATTGCACGGCGTCGCTGGGCTGGCGGCGTTCTCTTGTGAGATAAGCGTGAAGGCGGGCGAAGAGACGACGAATGGTGGCCGACATCGGATTCTCCTGAGTGTGCATGGGTGTCGCAGCAGGCGTTCGCGGCGCTCCCCACTGTGCGCCGCCTGCGACTCTTCCAGTGTGAACCACCCTCGCCTATAGCACAATTGCATTACTCTTCAATTACGATTCAGTTTTTCTTCACTGAGGAAACGCCGTGCTCATCGATCCTCGCCGACTCTCCCACCTCCTCGCCGTCCACCGCCACGGCGGTGTCGTCGCCGCCGCCGATGTCCTTGGCCTCACCCCCTCGGCCGTCTCCCAGCAGATCCGCAAACTTGAAGAGGAAGTCGGCCTGCCCCTCGTGGAGCGCACCCCTCAAGGCGCCCGCATCACCCCCGCCGGTCATATCCTCGTCGCCGGTGCACAAAGGATCGAAAACGAGCTGAGCGAAATCGCCCACGATCTTCGCCCCATGAGTGGCGCAGTCACCGGCACCCTCGGGATCGGAGCATTCCAAACGGTGATCCGCTCCGTGCTCCTGCCCCTCACCGCTGAACTTTCCACGACCCTGCCCGGCGTTGAAGTGCAAATCAAAGAGACGGACGAGGCCGATGGCATGGGTGACCTGAGAGCGGGCCGCATCGACCTGCTCATGCTCGAACGCGACACTGCGCCCGGCACACCGCCCACGGGCTTTTCCGATACCGCGTTCATCGACGAACCCTGGGTGCTCCTCAGCCCCGAGAACGCCCCGCGCGTGGAAACCGAACGCGATCTCGCGAAAGTCGAGTGGCTCAGGCTTGCGCCCCAGACGATCGGCTATCACGCGATGCAAAGGATCGTCTCCTCGATCCCCCAGGCGCATTGGGTGCCTTACGAGTACATCAACTACGAGGCCGCCCACGCTCTCGTCAGGGCCGGATGCGGCTCCACGATTCTGCCTTCGATGGCGGTGCGAGGAATCCCCCTGGATGGCATGCGCGTCACCCGGCTCCCGGGATTCGGATTCAGAAGGATCCTCGTACGGCATCGTAAGGGCGAGGACCGGGAGAATAGCGCAACCGGACAGGTCCTCACCGCATTATTCTCCTGGGTTGCCCAACACCACGAGGATTGGCGCGAGGCCACCGGCTGAAGAGCCGTTCGCACTCGTTCCTGGCTGGGAAAAATTCACTGTCCGACTGTGAAAACCCGCTGAGACATCGCAAAATCGAGGGGACCGGCCCAGTGCTCACGCAATTCGGATTCGACGACCTTCAGATCCGTCCACGGTTGAATATGCGTCGCGACAAGGCGAGCGACTTCGGCTCTCGCCGCCAAACGGCCCGCGCGCACACCATCCATGTGGATACCACGAACCGTATCCGCACGGGTGAAGCCGACCTCCGTGAGTAAAAGATCCACGCCCCGAGCCCCCTCGAGGATCGCCGGAGCCTCATCCGTGTCGCCGGTGAAGAACATCGACACGGTCTTCGAAGGGGAAGAATCCGAAGGCCCCACGATGCGCGTCCCAAAAGACTCGACCGTGTGGATTCCTGGGAAGGGGGTGAGCGTCATTGGGCCGATGCGATAGCTCTGCCCCGCGCGAACAGTGCGGATGTCGAACTCGCCCTCGTAGGTGTCGGGCAGGCGCGTCCCATCGATCTGGCGAATCCTCTCCAAAGTGCCGACCGGGCCCGCCAGGGGCAGAGGCTCAAGATCAGAGCCCGGCCCCCAACGGCGGAACACCTGCAAGGAGATGATGTCGCCCATGTGATCGGCATGAGTATGCGAAAGGACGAGGGCGTCGATCATCCGCGGATCGATATGACGCCACAAGGCCCCGAAGGAACCGGGCCCCATTTCCAGGACGATCGACCAGGTCCGAATCTCACCCGTGAGAGGATCAAGCCCCGGGCATTGGACGAGATAGCAGGATGCCGGGGATGCGGGGCCCGACATCGACCCCGTCGCTCCAATGATCGTCAGACGCATCAGGCTCTCGCCCCCGCGTCGACGGTGATCTCCTGAACGCGAGCAACCTCGGGACCGAGGAAACGGCGCGCCAAACGCGGGAAGTTATCCGACTCCCCGGTGGTGAGGAACTCGTGGGCGGGCCCTTGACCCCGGGCCCAGGGGGCGTGCAGGAGGCCCCGGTCAATCAATTCGTTGTAGGCGACATTCGCGGTCGCCTCAGAAGAGGTGACGAGGGAGACCCTCTCCCCCATGATCCGAGCGATCACACCGGTGAGCAGCGGATAATGCGTGCACCCGAGGATCACGGTGTCAACCTCCGCCTCTTTCAAGGGCTGTAAGTATTCGCGGGCCACGGCTTCGAGTTCGGCTCCCATGGTGATTCCGCGTTCAACGAATTCAACGAATCTCGGGCAGGCCTGCTGGACGACGCTCAGCCCGGGAACTGCGCCAAGAGCGTTCTTATACGCCTCGGATTGGATCGTCGCGAAAGTGCCGATCACGCCGATCCTGTGGTTGCGGGTCGTTGCGACCGCCTGACGCGCAGCAGGGGTGATGACCTCGATCACCGGGATATGTGCGTCGATCCAATACCTCTCGCGGGCATCCGACAGAGCCGCCGCGGTCGCAGTATTGCAAGCGATGACCAGGGCTTTCACTCCGCGCGATGCCAACTCATCCAAACAGGCGAGGGTGTAGCGGCGCACCTCCGCGATCGGCCTGGGACCATAAGGCGTATGAGCCGTATCACCCAGATAGAGGATCTGCTCATCCGGGAGTTTATCCATGACGGCGCGCGCCACCGTAAGACCCCCGAGCCCGGAGTCGAAAATACCGATCGGCGCATTCTCCATGCTTCCCGACCCTAGCCGTGCACCCCCGAAGAATTCAGCGCCGAAATCAGTGAATCCTGCCACCAGGTGAGAATCGAGTAGAACACCGAGGCCGCCTGCTCGCGGCTGCCATCAAGCGCGCGGCCAGCCAATTCCTCAATTCTTGCGACATCCGCATCCGTTTCGAGCTTCAACTCCCCCGCCAAGCCGAGACGAACATCATTGAGCGCCGCAAGCCACTCCCACACCTCATCGGCTGGGATCACGAGCTCCGCGCACTCACTGCGCTCAGCGCGTTCAATCCTTCCCGCGACCTGGCGAAGGCGTGCAGACTTCTCCGCTCGAAGGAAATCCTCCGTCAAAGCCCGCAAACTCGAAGCATCCTCAGGATCCAGACTCATCGCGGGAAGTAAATACTCCAAGGCGCGCTCTTCGGGGGCCTCTCGCCCCGTCTCCAAATCCGTTGCCGCCAAAAGGAAGGAATTCATCTCTGCAGGCTCATCAAGGACGACGAGGATCTCACGCATGAGGCGAACGATCAAGGTCGAATATGGAGGCTCAATACACGCGCGATACGCCCCGTCCTCGTATCTGAAACGACCAATCATCGCCGTATTGTCCCGATCATCTCTCCGCTTCCAATGTTGCGCGCAGACCATAGCCGTGCATGGCAACGACATCAGCTTCCATGCGCTCACGCATTCCCGTGGACACCACGGCGCGGCCCCGCTCATGAACCTCCAACATGAGGCGCGTCGCCTTCTCACTCGAATACCCGAAGTGGCGCTGAAACACGCTCGTCACATAGCCCATGAGGTTGATCGGGTCATCCCAGACGACGGTGTGCCACGAGGCGGACGGGACGGGAATCGTCCTCGTCCTCGTATCCTCCTTCGGGATCATCGTCACACTCGACATACGTTCCAGACTAGGCAAGGAATCTCACGATCGCTGAAGTTTCGCTACTTCAAGCGCGCCCGATCGCGATACCGTGAGCATATGCCAGCTTCAATTTCCACATCATTGCTGACCGACATGTACGAACTCACCATGTTCGACGCCGCCCTCAAAGCCGGGACCGCCTGGAGGACATCCACCTTCGAGGTCTTCGGACGCCGTCTTCCCGCCACCCGCCGTTTCGGTGTCGTCGCAGGCATTGGTCGTATCCTCGAAGCCCTCGAGCGCTTCGAATTCGAACCCGAACAAATCGATTGGCTCCACGAACACAAAATCGTCTCCGATGATGCTCTCGACTATCTCAAAGATTTTCGTTTCTCAGGAGATATGCTCGGCTACGCAGAAGGCGAATGCTATTTCCCCGGCTCCCCGCTCCTGACCGTACGCGGCACCTTCGCCGAATGCACAATGCTCGAGACTCTGCTTTTGTCGATCCTCAACTACGATTGCGCGATCGCATCAGCAGCCTCACGCATGACGATCGCCGCCCATGGACGCCCCTGCATGGACATGGGGGCGCGCCGCGGTCATGAACGCGCCGCTGTATCCGCAGCCCGCGCCGCCATCATCGGTGGTTTCGCCGGAACCTCCGATCTGGAAGCCTCGAAACGCTACGGCTTGCGCGCCATCGGCACCGCCGCCCACTCCTTCACTTTGCTCCACGACTCCGAACGCGAAGCCTTCGACGCTCAGATCGCATTGCTCGGCCCGGACACGACCCTGCTCGTCGACACCTATGACGTTGAACAGGGCGTCATCAACGCCGTCGAAGCCGCGCGCGCAGCCGGGGGCGAACTTGGCGCGGTCCGCCTCGATTCAGGAGACCTCGTCGCTTCGGCCTTCAAGGTCCGCGGTCAGCTCGATGCCCTGGGGGCGACGAGTACGAAGATCACCGTGACCAACGACCTCGATGAGTATGCGATCGCTGCCCTCGGTGCCGCTCCGATCAACTCCTATGGGGTCGGAACGAAACTCGTGACCGGATCGGGGGTGCCAACTGCGGCCCTCGTGTACAAGCTCGTCCAAAGGGAGGATGCGAGCGGCGCCCAGATTCCCGTCGCGAAGAAATCCGAATCGAAGTCGACCGTCGGCGGACGCAAGTTCGCTGGCCGTGTCCTCGACGAAGACGGCTACGCAGCCGAAGAAGTCCTCGTCGTCACCGACTCCGAAGAAGCGGCCAAGGAGGAGTTCGCGAAGATCGGCGCCCGTCCCCTGCAGATCCCCCTCATCACGGGCGGTGAAATCCACTCCGAGTTGTGGGGCCCCGACGCATTGGAGAAAGCCCAGGCGCACCACGTGCGTTCGCGTAACGAGCTCCCCTACCAGGCGTGGAGGCTCTCCGAAGGAGATGCGGCGATCCCGACCCGCTATATCACTCTCTGAGACGCGCTATTTACGGCCAACGAACCACTGACGCAGTAAAGCGATACGCGCTTCGATCTGCTCAGTGGTGGCCTGCGCGATCTCGGGGCCTCCGCATCGGTTCCGTAGCTGGGAGTGCACCATCGCGTGCGTGTCGCCGGAGCGGCGCGACCAGGAGGCCACGAGGTGTTGAAGCTCTTTGCGCTTCGCCGCACGGACTCGGTGATCGGAGATCCCCGAATTCGCTTCACGTTGACGGGCCGCAGACCTCTGTTTGCGGGCCGAGGCCGCCTGTTCGGCCTGGCGGGCCCTGAGCAGCGTCGTCACCTGTTCCGCATCCAGGAGACCTGGGATCCCCAAGTATTCCTGCTCCTCTTCGGAACCGACCTCGGCGCCCTGGCCCCAGGCGGCGCCATCGAAGAGGACGCCGTCGAACTCGGCGTCCGCTCCGAGAACTTCGAAGCCTTTGAGGAGTTCACCTGAAGCCTTCTCCTCACGATTCGCCTCCGCCACCATCGCATCTTCTGGATTCCACATGGAATCCTCACCCTCGGGCTTGGGCCGGTCGAGAGCATGGTCGCGTTCGAGCTCCATCTGGCCGGCGAGATCCAAAAGGGGAAGGACGGAGGGGATGAACACCGTCGCAGTCTCCCCGCGCCGACGTACACGAACAAAACGACCGACCGCCTGTGCGAAGAACAAAGAAGTCGAGGTGTTCGTCGCATACACACCCACACACAGGCGCGGAACGTCCACGCCCTCGGACACCATGCGGACCGCGACCATCCACTTGTCATCGCCTTCACGGAAAGCATCAATGCGGTCTGAAGCGTCGGCGTCATCGGAAAGAACAACCGTCGCCGAACGTCCCGTGATGTCGCGCAAATGACGGGCGTAGGCGCGGGCCTGAGTCTGATCCGATGCGATGACCAAGCCGCCAGCGTCCGGGACCTGTCGACGCACCTCCTCGAGGCGCAGATCGGCGGCACGCAAAACCGCCGGGATCCACTCGCCTTTCGGGTCGAGGGCGGTCCTCCACGCCTGCTTCATCATGTCCTTGGTGAGGGGCTCACCCAAGCGGGCGCTCATCTCATCGCCCGAGTTCGTCCGCCAGGACATCTGCCCCGAATACGACATGAAGAGCACCGGACGGACGACGCTCTCTCGTAGGGCGTCGCCGTATCCGTAAGTGAAGTCCGCCTTCGAGCGGCGGATCCCATCAGCGTCCTCTTCATAGCGCACGAAGGGGATCGGCGAAGTGTCCGAGCGGAAGGGGGTGCCCGTGAGAGCAAGGCGGCGCTTGGCGTCAGTGAATGCCTCGCGCACACCATCACCCCAGGACAGGGCATCTCCCGCGTGGTGGATTTCGTCGAGGATGACGAGGGTCGGATAGGCGCGGGTCCTGGCCGCATGCACCGGAGGATTCGCCGCGACCTGCGCATATGTGACGGCGACCCCGTCGTAGTGGGAACCGGCTCGGCCCTGAGAGTTTGTAAAGGCCGGGTCGATGTGAATGCCGACCCGGGCTGCGGCATCCGCCCATTGGCCCTTCAAATGCTCTGTCGGACACACGACCGTGAGCTTGTCCACGATCCCCGCGCCCATGAGTTCAAGCGCGATCCTCAAAGCGAAAGTTGTCTTCCCCGCTCCGGGGGTCGCGACCGCGAGGAAATCACGCGGCTCTTGGCTCATGTACTGACGCAAAGCCGCAGCCTGCCAGGCGCGCAAAGCGCCCTCGGCGCCTCGTCTGGCACGCTTTGAGGACGAGTGCGACAGGTGGTGAGCTGTGGAAGCGCGGGATGGGAAGTGTCGATCCTGCGCTGCAGTCACTGTCCAGAGCCTCCCGAAGATCCTTTACCCATCATCCCCCCGTCTGAGAACGGCCAGTTCCGGCCATTGCGTCCCATTGAATCGCGCAGTTCCTTGCACGTTGGGCACACCGGATACTTCGAGGCGTCCCGCGAGGGGATCCACACTTTCCCACACAGGGCGACGACCGGTTGGCCCGTCACCATCGAAGAATTGGCCTTATCGCGGCGCACGAAATGAGCGAAGCGGTCGCCATCTCCCGGGGCTTTCTCTTTTTCGACCTCGGTGCGTTCAAGCAGTCCCGTCGAGGAGTGGGTCGAGGGCCCTGCGGGGGAAGTCGGGGCTCCCGGTCGGGTCGGTTCATCGAGGGCGTCTGGCATGCTCCCCATTGTAGGCCGAAGCATGGCAGTCTTCTTCGTGCAAAAGAATCCGGGGGTGGGCTCAGTGCCCACCCCCGGATCTTCAAGCCTCAGAGCCGATTCACTTCTTGGCGACGGCCTTCTTGAGGGTGGAGCCTGCGGAGAGCTTCACGCCGAAGCCCGCGGGGATCTGGATCTCTTCGCGGGTGCGGGGGTTGCGGCCGGTGCGGGCGGCACGCTCGACGCGCTCGACGGAGAAGAGACCGGTGACCTTGACGGCCTCGCCCTTGGCGAGGGACTCGACGAGAACATCCTGGAAAGCGCCGAGGGCGGCATCCGCCTCAACCTTGGTCAGATTGGCGCGCTCAGCGATCTGGGCCACAAGCTCAGTGCGATTCACGGACATGGAGGAACCTCATTCCTTCGTACAAAGCCATCACTATGACGGCCATCGAGGGACACACTACGAAAACATCGTGAGATTGTCAGGTTCTGGGCGCGTTTTTCCCGATATCTCACGATTTTTCGCCCCCTCTCCCTGCTCTTTAGAGCACTCTTTGCGAGATGCATCACCCGATTACAGATCCACAGTCCAAAGGGGAGACGATTGAGGTGCCCATCACAACCTCTTTCAGGAGATCTCATGGCTCTTGGACGAAGCGCGGGGGCCACCACCCCCGACCACCGTCATCCCGTCGATCAGGTGCCCCCCGCCGGCAAGCTCGCCGTCCTCGGTATCCAGCATGTTCTCGCCTTCTACGCGGGCGCCGTCGTCGTTCCCCTCGTCATCGCATCCGCCCTCGGCCTCGATGAGCAGACCCTTGTGCACCTCATCAACGCCGATCTTTTCACCTGTGGTATCGCGACGATCATCCAGTCCGCGGGCCTGGGCCCGAAGATCGGCGTGAAGCTCCCCCTCATCCAGGGAGTCACCTTCACCGCAGTCTCCCCTCTCATCGCGATCGGAATCGGAGCGAGCCCCGCGGGGGCCGACCCGAAGACCGGCCTTGCCACCATGTACGGCTCAATCATCGCCGCTGGTCTCGCAACCTTCCTCATCGCCCCCTATTTCGCAAAGCTTTTGCGTTTCTTCCCACCGGTCGTCACCGGCACTCTCCTGACGGTCATGGGCATCACCCTGATCGCAGTGTCTGCGGGCGACATCGTCTCCCTCGCGAGCTACGCACCCGAGGGCGCCGACCTTGGGGCCCTGACTTTGAAGGGCCTCGCCTACGCAATGGGGACCCTCGCGATCATCGTCGCGATCCAGAAGATCTTCAAAGGCTTCATGTCGACGATCTCCGTCCTCCTCGGCCTTGTCGTCATGACGATCATCGCTTTCATCCTCAAGGATGCGTCCTTCAGTAATGTCGCGCAGTCCTCATGGGTCGGCATCACCTCCCCCTTCTTCTTCGGCCTGCCGAAGTTCTCAGTCGCGGCGATCATCTCAATGCTCATCGTCATGGCCGTCACCGCTGTTGAAACCACTGGCGATGTCTTCGCCACCGGGGAGGTCGTCGGCAAGCGCATCACCCCAGAGCACGTCGCCAGGGCCCTTCGCGCGGACGGCCTGTCCACCCTCCTGGGCGGTGTCCTCAACTCCTTCCCCTACACCTGTTTCGCGCAAAACGTCGGGCTCGTGCGCCTCACCCGAGTCAAGTCCCGTTGGGTCGTCACCGCGGCCGGAGTCATCATGATTATCCTCGGTCTGCTCCCGAAAGCCGGTGCGATCGTCGCCTCGATCCCCGCTCCCGTGATCGGCGGCGCCTCCCTCGCGATGTTCGCGAATGTCGCGGTCGTCGGCATTCAAACCCTCGGCAAAGTGGATATGCGCGACAACCGTAACGCCGTGATCGTTTCGACTTCCGTGGGCCTCGCGATGCTCGTCACCCTCAAGCCTGAGATCGCGACCATGGTTCCCTCCTGGCTGCAGATCATCTTCGGCTCGGGCGTCACGATCGGTGCTCTGAGTGCCTTCATCCTCAACCTCTTGTTCTTCCACCTCGGCAAGCAACAAGGTCCCGATGTTGCGCTCGTCGATGGTCGCGCCGTGTCCATTGACGAGGTCAACTCCATGGAGCGCGATGTCTTCATCCGGGCTTTCTCCGGAATGTACGAGGGCGCGACCTGGCCCGTGGAGCGCGCCTGGGAGCAGCGCCCCTTCGCGGATACCACTGAGCTTCGCCGCGCTTTCGAGGACGAGGTGCTCGTCGCCTCGCTCGAGGAGCAGGAAGCCCTCATCGCTGCCTACTCCGATATCGCTGAACTCGCCGCAGGCAAGGGCGATGAGCGCGCGAACCAGGACACTGCCGCCCTTGGACTCGGTGAATTCGACGACAAGGAGCTTGAGGATCTCACAGCCGCTTCTGCGGCGTATCGCGAGAAGTTCCACCGTCCCCTCGTCGTGTGCGTCACGAACCTTGCCGACCGTGAACACCTCATCTCCTCCGCATGGAAGCGCGTGGAGACCTCGAAGGCCCGTGAAGCCCGATTCGCTTTGGGCGAGGTGATCGACATCGCGGATGAACGCTTCACACAGCTCGTCGCCGATGCGAATCCGATCCGTACCGCCTGGGCGCGCAAGATGGATCAAGTCGACTGAACTCACCCTTCACACATTCAGGGGCAGGCCTTGTGGCCTGCCCCTGAATGCATCCCATCAACACAGTGCGAGTTCTTCCGAAGAGTCTCCTCAAAATCCATCATCGGCGTTGACGCCCCCTTGTGGGCCGTTCGCCGTATTCCTTTGTGATGGGAATAAAGTTAGGGGTCCCTCCTTCAAGGACCATCGATTGAAGCTAGGAATTCCCTGAGAATTTCAATCGGTGATCGGGCGGCGTTGGAAGAAGGCCGCGAGCGCTGAACCGGAGACGTTGTGCCACACGGAGAAGACCGCGCCCGGGACTGCCGCCTCGGGAGTGAAGTAGGTGGCACCCAGGGTCGCAGCGAGGCCGGAGTTTTGCATGCCGACCTCGATGGCGGTTGTACGAGCGGCTTTCTCCCCGACCTTGAGGCCCTTCGCAGCGAAGTAGCCGAGAGCCAGGCCCAGGCCGTTGTGCACAATGACAACCGCGAGGACGACGAGGCCAGCGCTGAGGATTCGCGTAGATGAAGCACCCACGAGGGCGATCACCGCATAGGAGATGCCGAAAACGGAGATCCACGGCAGGGCCGGGAGGATCACTTCGACGAGCTTGGGGAGGAAGCTGCGCAACAGCAGGCCGAGGACGACCGGGATGAAGACGATCATCATGATGGACTTCGCCATCGCCACCGCATCGACCGGCATGTACTGGCCGGCGAGGTACTTCGTGAGGATCGGAGTGACGAGGGGCGAGAGCAGGGTCGACACTGCAGTCATCGCAACCGAGAGGGCGACATCGCCCTTCGCGAGGTAGGCGACCACATTCGAAGCGGTTCCACCGGGCGCACAGCCCACGAGGATCACACCAACCGCGAGCGCCGGGTCCAAGCGGAACGCCCAGGTCACGGCAAGAGCGGCGAGGGGCATGATGATGTATTGCGCGAGGACGCCCACAAGAACCGGCCAAGGGCGACGGGCAATCACACCAAAATCCGGGGGCGTGAGAGTCAGCCCCATGCCGAACATAATGACCATGAGCGCATAGTTCACGCCCTTGACGAGCGGCGCGGTCTGGGCAGGGAAGAGGAGCCCCCCGATGAGGGCCCCCAGGATGATCAAAGGGAAGACAGTGACGGCGATCTTCGCCGAGCGGTCCTCGCGTTTCGAGGACGAATCGCTTGAAGCGGACAGAGTCGTCGTGTTCTGGTCAATGGTCATTGTTCGATTCTCACATGGGCTCTTCGGGGCGACCAGTCCTTTATCGCGCATCGGACGCATCTCTCAAGCGCGCACCCGCCTCCACGTAGAGTCATCACTATGACGATTCCTTCTGCTTCTTCGTCCTCCACCCCCGTCTCCCGCAAATCTCGTAGCCGGAGGCGCATATTGACGAAGAAAGGCTGGATCCCCGATCAACACGGCGCCTGGCCAATGGCGATTCTGCCTCCCCTGCTCGGGATCGGAGCAGCTGGCCCCCATCTTATTCACCTGCTCCTCATGTGCGCCTGGCTCAGTGCGTTCGGTGCCTTCCACGCTCTTGAGCTGTATTGGAAGACCCCTCAGCGCAGGCGGGGCAGCGTGCGTCCCGCCCTTGTCTCCTGGTGCGGCCTCACCCTCCTCTTCGGTGTTCCGCTCCTTGTCATACAGCCCGGATTCTTCGCTTGGGCGCCGTATTTCGCACCCCTCGCCCTCATCGCTTTGATTGAGGTCGTGCGCGGGAAGGAACGGGCGATCCTCACGCGGGTGACGAGTGTGGGTGCGGCGGCGCTCATGACTCCGGTCGCAGCCGCACGCGGCCTCATCGCCCCTCTTTCCCCCGATCTGACTCAGGCGTGGGTTCTTGGCACGATCCTCGGCGCATACTTCATTGGCACGATTCCGCTGGTGCGCTCCCTGATCCGCGGCCGCAAGGAGATGCGCTGGATCATCGGATCGATCATCTGGCACCTCGTGTCCTTCATTGGCGTCGCCATCGCTTTCATGAAGGGCAGCGTCGTCCTCGTCCTCGTTCCCGTGTGGATCGCCTTGACTCTTCGGGCGGGGGCGATGCCGCTGTTACAGAGGCGGGGCTTTGCCTTGACTCCCATGAGGATCGGTCTTGGGGAGATGGTCTGGAGTCTCCTCGTCACGGCGTGCCTGCTCGCCTCGGTGTGAGCGTGGGGTGAAGTGCGGGGTAGCGCGAGGCGGGGGTGGCGTTACTCGGCTTCGAAGATCCGGCCTTTGAAGGTGAGCACCAGCACGCCGACAAGGATGATCGGAATGGCGATGCTCGCAACCGCAAGAGCGATGAGGGCGAGCCACTGATAGAGGGCTCCGGGCAGAGCTTCGGCACTCACGAGGGAGGCGACGGCGAGGGCGGCCACGGGGAAGGTGTAGGCGAGGTAGGGCAGGGCGAAGGGGATCTCAAGGAGCTTCTTCGCTTGGAAGCCGATGAGCAGGGCGAACATCCAGGAGATCGACAAGAGAATGCGGCTCAGGGGGTCGTCGGATTCGTGTCCCAGGCGCGACCATGCGACCAGGGCAACGGCGGGCGGGGCGACCATGATCGCGTAGGTCGGCATGAGCTTGGCGGGGATGCCCTTATCGTGCATGAGGAGACGCTCAATGATGAGGGTAAGGAAAACACCCCAGAAGACCATTCCGACGCCGAAGGAGAACCACGCGAGGTCCATATTGCCGATCTGCGGGGCTGCCAGTGGGGTGATGACATTGCCGACGATGGGGATCAACCACGCAGGAGTAATGTCCGTGCTCGTGATGTCGGGGCGCATCGACCATGCCGTGAGGACGAGGGCCGTGGCGAGCAGGTGCCCGAGTGCGCCCACCCACCACATGATGCTGGCCAGGCCGGGGGCGACATCCGCGCCTGCGGTTGCCAGAACAAGGGTCGCGATGGTGATCGTAGGGACGAAGGGCATGCGCATCTTGTGGGAGAGTTCAGCCCGCGCGGCCTTGGGGTGCAGCGCCCACTTCGCAAGATAGGCGCACAGGACGAGGACGTAGAGGGATGCGGCAATGGCGAGGATGAGGAGGGAGGGCCATGTGGGCAGCTCCCATAGGTGTGCGGCTCTCTTCCATGCGAGGGAGAGGGCACCCACCCCCATCACGGAAGCGAAGACGGTTACGGGCATGTGGGCGAGCGATCGTTGAGATGCCGTCATTGAGGTTCCTCTCGGCGCGATTGCCTGGTCTGAAGGAGCAAAAACATAGGAAGCATATACCCCCTGGGGTATTTCTTTGTTTGCTGCCCCAAAAAGGAGAGGAAGGTCAAGGCGAAGCGCTCGACTCCTCTTGGCATTCGAAACGGCTCCCCGCCCTCAGCAATAATGTTCCCCATCCGTCCCCGCTCCCCAAGCCCGAATCACTAGGGAGGCCCCATGCCCGGCGAACGCTTCGCCCGACTCGAACTCCTCCTCGGCACCGAAGGCCTGAACTCGCTGACAAAGGCGAGAGTAATGGTCCTCGGCTTGGGCGGCGTCGGCTCGAGCTGCGCTGAAGCACTCGCACGCGGCGGGATCGGCTCCCTCGTCCTCCTCGACCGCGACATCATCGAAGAATCGAATATCAATCGACAAAAACTCGCCTTCACCTCGACCCTCGGACGCGAAAAAGCGGAAGTCATGGCCCAGATCGTCGCCGATATCAACCCCGAATGCACGGTCTTCGCGACACGGACCTACCTGGATTCGCGCACACTCGAACAGACCCTGGACCGATTGCCCCGGCCCGACTACGTTCTCGACTGCATCGACACCCTCACTCAAAAGCTCGGGATCGCCCGCTGGTGCGCGAAGGAGGGGATTCCTCTGATCTCCTCAATGGGCGCGGCCAACAAATTCGACCCGACGCAGCTCCACTTCTGCGAAGTCCAAGAGTCACGCCACTGCCATCTCGCCCGTGCGATGCGCCGTGAATGCCGCCACCGGGGGATCGCAGACCTCGAAGTCCTCAGCTCCCAAGAAGCACACCCCAGCTTCATCGCCCCGAAGAGTTGGGATGCGAACGCGAGGCTCGGATCGATGAGCTACATGCCGCCGATCATGGGGCAGATGCTCGCCGGACAGGTCATTCAAAGACTCGCGGGGCTGAGCCCCATGCCCACACCCCCGCGCCTCGTCGATTCTTGGAGGGGCACGCCGTGTTCTCGAGGCTAGACACCCACTACCATTTCGATTTCATTGACGAGGGCGAGCGTCTCCCCTTCCTGCGCGCCTGCACGAAACGCGGGCTCCGGCTCGTCGCCCAAACACTCCTGCCCTCTTACTTCCACGAGAACCTGGAATGGGCGGCCAACGCCCGCCGTGATGCGGGGGCCAACCTAGGCGCAGGTGGCGACGAGGGCGCCGAGGTGCACTGGCCAGCGTGGTCTCTTGGGCTGCACCCCTGGTATATCGAAGAGGCGCACATCGGCGAAGAACTCAAGCTTTTTGGCTCCGGCCTTGAAAAGACTCGCCTCATTGGCGAGGTCGGGCTGGATTTCGCGCCCAGGCGATTAGAGGCTGTGCCCGCACAACTGCAAGTCGAGGTGTTTTCCGAGGTGGTGACAATGAGCTGCGAGGCGGCGGTTCGCGGGGGCGTTCACGGCGGGCAGGCTCAAAAGTCGAGTCCTCTGCCCCATGTCCTCTCAATTCACGCTGTTCGAGCCGCCAGCACCGTCCTCGATCTTCTGGAAGGATCCGACGCCCTCGGACGTGGGCTTGTTCCCGTGTTCCATCGTTTCTCGGGCACGAGTGATGATCTGACGCGCCTGATCCGCATGGGCGGGTATATCTCCATCAACCCGGCGATGCTCACGTCGAAACGCGGGCGAGCCTACATTCGGCAAGTGCCTGAAGAGCGTCTCCTTGTGGAAACGGACCTGCCTGCTGCTCCGGCGGCGTCGAAGGAGGGGGAGGGTGAAGTGAAAAGCGGCGAGCGCCACTGCGAAGAACTCGATGAGACTCTCAACCGAATCCTCACCTCTGTTGAAGAGCTGAGGAAAGAGGATCCTCGTGAGGTTCTGGACAAGACCCAGGCGAGGTTGTATGGAGGGTTTTAAGTAGCGCTGTTGCTCACTCGAAGCTGAGAGAGTCCACTAGCTGCTGGAGGTCGTGCGCGGTGAAGCCACGGAAGTATGTCGAATGAGTTCGTTTCACTGTCTCAAGCGAGTCAGACCCGACGAGGACAATGTCGATTTCGGGCCTATCGTGGTAGCGCAACTCAGCCTCCCGGTATGCGCGGGCCGCGACATCACCATCTGTGCCATACGAGCGAGACGATAGGAGTTTGTCTTCCTTACGGTCATAGATGAGGAGGAAGTGCTCAATGACATTAGAGTTCTTCGTCATCAGTGTTCCTCCTGCTCCAGTTGACCCCCAACGGTATTCTATTCGCTCCCATATCCGATAAATGTTGGGGATGTTGTTCTCACTGATGACGATCCGACATCCGCCAATGTCACCCATGCGCGACAGATCCAGGCCCTTCTCCCGGTAGGTGAGCTTCTCAACGATCGTCTCCATGCGCTTGAGACGCTGACTCACCTCCGCCTCAATGCCCTCTGTGGCGAGGAAGCTACGAAGCCCATTGTTCACTTTCAGGAGAGGATCAGCGAATGTTCTCCGATACTCTGCAATCACCTCAAGCGCAGCCAAACGCTCTTGTTCACTTGCTTTGCCCTGCGTGAAAGCCCGCAGAGTTGACCCTGCTTTGCGGACCTGCGACTTCGATGGTGCCGGCACGATGGCCTCCTCATATTCACACATGGGTGAGAGCTGGGCCTTGTCCCCTCCCCTGAGGCGTTCCCCAATCACACCTAGTATCGCTGAGCTTGCCCCGCTGTGACACCCGCAAGCCGCCCATCGGCGGCGTGGATTGTCATTCGCTGAACACTCCAGCGCATCGTGCGATATCAGCTACGAGATACGAATCCCAGTTTGGCAAGGGAAAGCCCCAGAACCCTGCGGCTCTGGGGCTTTCAAGAGTGGAGATGGGGGGAACTGTTTCAAAAGTGGCTATGACCTGCACAGATGTGGAACTTTAGCAGGGTCGTGTCCTCTGCGTGCCCAATCAGCTTGTCTCATTCGCCAGTTTGCAGGTCCGGTGGGAGGCCCCTCGACCAGGTCACAGGGCCTCAAATTCGTATTGTCAGCGAGTGACGTATGATGCTATTCTGTGACTCGCAGGTGGAGACACGCTGTACACCGGGAATGCATCGAACTCGCGTTTAAGCGGTCTGTAAGGCCGTCGGCGTCCTGGGGAAGGGTCACGGAAGTGACCCTTCTTTTTTATTGTGAGGATGCAGTGTCGATCTTTGTGTACGCCGACGAGTCTGGCGTATTCGATCAGGCCCATGAGAAAGTGGGGGTTACCGGCAGGAAAGTGTGGCATCGCTCGGGCGTGTCGTGGGGGTTATGTGCGTCCGGCCCAGCCTTTTCGGGTGTGGAAGCCGGTGTCGGGGCTGTAGGCGTTGTCGTAGTGTGTGGGCCCGTCTGGCCGGGGTTGTTGTTTGTGTGTTGTGGGGATGATCGTGTGGGGTTGCCTGGCGTGTTTGTCCCATTCGGCGAGCACTGTGGCGGCGTTGATGGGGTGTTGGTGGTGGGCGAGGAACCAGTGAATTGCGGTGATTTGGCGAGTCGTGTTCCAGCCTGCATGGGCGCGCAGTAGGGCGCGGATTTGAGCGTTGAGGGATTCGATGGGGTTGGTGGTGGATGCGAGGTTTGGTCGGCCAGGGTCGGTGAGGAATGTGAAGAGCTGTTTGTTCTTGAGGAGGCGTTCGAGCCGGTAGTACACGCGCCTGTCGCGTTCGTGGGTGTACCACCATTTCTTGCCTGTGGCTGCTGCCTTTTCGGGGTCTTGGGACGCGTAGGTGCGTTCTTTGAGGTAGTGGGCGTATTCGGTGTGGAAGGCGGCGAGCAGGCTCGCCCAGTGTGCGGCTTCATCCATGGTGGTGACGCGCAAGAGGGAATGGGACAGGCCTTTGAGGGCTTTCCCGGCGGGCGTGTGGGGGTTGTGGGTCAGGTCCACGGTGTTGTTGCGGTGGACATGCACGAGGCAGCGTTGGACCGGTTGGTCTGGTCCCCACAGGGTGCGGATCGCTGCCAGGGCGCCGCCTGCCCCGTCGGTAGTGATGATGCCCGGTGGGGGAAGTGGGCTGAGGAGCTGGGTGTAGGCCGTAGCGTTTTCTCGTCCGGCGGTAACCCAGTTCAACGGTGTGCGCCCGTCGGTGGCGATGAGGATGACCCAGGAGTGGGAAAGGAAGATCCCGTCAATGAACACCTGGTCATGAATGACGCCGTCCATGACTGGGAGGGGTGGTGGGACTTGCCAACACCACGAGGTGCGCTGGCGGAAGGATCGGCCGGTGAGTGTGCCGTCGCGTTCGGCTTGGCTGGTCTTGCCGGTCGCGTAGTTGATGAATGCTTCCAGGTCGTGGCGGCGAGTTACGTCAGGGCGCTTGAGAACTGTCGAGAATGAGCAGTTCCGGCAACGCCACCGGGGCGTACGAGAAGACGTTTTCCCGTTCGCGTTCATCGGCGCTCGGCAGATCGGGCACTTGGGGCGCTTGTCAACACTCAC

Protein sequences of DBSCAN-SWA_1

>NZ_CP040505|1478075:1511567|1484784_1485423_+|WP_005964734.1|DBSCAN-SWA
MTIENSSDSPLDSSCDSSLPSSRQIALANVVVDIEKTAARLGWDHAPSLYALVATRTLLDQPGLPADIAAQVRKGWDGSEEHLSAIVQEDLAEDELEEMLARLAWPPQVQGAALTVERLVVPPEVEEQAPEDPEEALKFISNHPSRTDVRLAVGALRSGESWCALRTKTFDSDDKVGQGSNLLPNLVEALLLSLDTEGTVETEGTPDEPRSE
>NZ_CP040505|1478075:1511567|1501547_1501832_-|WP_005964774.1|DBSCAN-SWA
MSVNRTELVAQIAERANLTKVEADAALGAFQDVLVESLAKGEAVKVTGLFSVERVERAARTGRNPRTREEIQIPAGFGVKLSAGSTLKKAVAKK
>NZ_CP040505|1478075:1511567|1496126_1496960_-|WP_005964760.1|DBSCAN-SWA
MENAPIGIFDSGLGGLTVARAVMDKLPDEQILYLGDTAHTPYGPRPIAEVRRYTLACLDELASRGVKALVIACNTATAAALSDARERYWIDAHIPVIEVITPAARQAVATTRNHRIGVIGTFATIQSEAYKNALGAVPGLSVVQQACPRFVEFVERGITMGAELEAVAREYLQPLKEAEVDTVILGCTHYPLLTGVIARIMGERVSLVTSSEATANVAYNELIDRGLLHAPWARGQGPAHEFLTTGESDNFPRLARRFLGPEVARVQEITVDAGARA
>NZ_CP040505|1478075:1511567|1481529_1484688_-|WP_131247409.1|DBSCAN-SWA
MPRFEPEEPRRFEPPKPPRPPRFPRRPSGGGEGQGKTGHRGFGPGSITIAILIAIGLVVYAASSIWTEILWFRQMQSTRVLLTQWFAHAGLFLIGLMLVAAMLILTVKYAYKHRAASTRGEASASLREYQRAFEPVRRVGFWGAALFFGFTNGANLATEWQTVLQFVNRTSFGKTDPQFGLDISFFVFTLPLLQLLVSFLLKITVLCLIASLVVSYLYGTIRMTPRPHASKPARLQAGLLTAFASLLIGARYWLGRYALLTQRGSSIDGALYSDIKATLPAHSILAVISVLVAVLFVVAAFKGTWRLPVIGVSVTIVSALVIGGMYPALIQQFRVTPNERALESEYIQHNIDATLEAYGLADLEYTNYDAATTAQPGQLREDSESTSQIRLLDPQVITRTVQQLQQSRPYYGFDSGMKVDRYTIGDERRDTVIAVREINLAGLSAEQRTWVNMHTVYTHGYGVVAAYGNTLTRDGLPSYWEQSVPSIGEMGDYEERVYFSPDAPTYSIVGAPEGSEPQELDYPDDNANGGQVATTFTGDGGPSVGNMWNKLLYSIKFGSTDIFFSSQTNSASQILYNRDPLDRVAKLAPFLTLEQEAYPAVVDMDDDPATPKRLVWIVDAYTTTDNYPYSQHESLSETTVDSQSSEVGEYVRSESVNYIRNSVKAVVDAYDGSVHLFQWDQEDPILQTWMKIYPERVEPLSQISGDLMSHMRYPEDLFKVQRELLTSYHVKNASDFYAGGDRWRLAEETSTVVTPSPELKGTGAPASAQPPYYLTMQMPTQETAEFSLTSVFVPGGESKREAMAGFLAVDSETGNEAGKIREGYGKLRLLALPSSTTVPGPGQVQNAYDSNETIARQLNLLNQADSQVIRGNLLTLPVGGGLLYVQPVYVQGTGSASYPVLRSVLTAFGNQVGFAPTLEESLDQTFGGDSQATVAGTDAASGAEGANGGEGGEGGAAAPLSAQEKLSQALANASAAMQAGKSALASGDWAAYGESQKALDAALEAALAAEEELSGGASSSPAGSGTSGAGSHAGNGASGSGSGTPGTAAPAS
>NZ_CP040505|1478075:1511567|1497938_1499279_+|WP_005964766.1|DBSCAN-SWA
MPASISTSLLTDMYELTMFDAALKAGTAWRTSTFEVFGRRLPATRRFGVVAGIGRILEALERFEFEPEQIDWLHEHKIVSDDALDYLKDFRFSGDMLGYAEGECYFPGSPLLTVRGTFAECTMLETLLLSILNYDCAIASAASRMTIAAHGRPCMDMGARRGHERAAVSAARAAIIGGFAGTSDLEASKRYGLRAIGTAAHSFTLLHDSEREAFDAQIALLGPDTTLLVDTYDVEQGVINAVEAARAAGGELGAVRLDSGDLVASAFKVRGQLDALGATSTKITVTNDLDEYAIAALGAAPINSYGVGTKLVTGSGVPTAALVYKLVQREDASGAQIPVAKKSESKSTVGGRKFAGRVLDEDGYAAEEVLVVTDSEEAAKEEFAKIGARPLQIPLITGGEIHSELWGPDALEKAQAHHVRSRNELPYQAWRLSEGDAAIPTRYITL
>NZ_CP040505|1478075:1511567|1509061_1509337_-|WP_040314412.1|DBSCAN-SWA
MTKNSNVIEHFLLIYDRKEDKLLSSRSYGTDGDVAARAYREAELRYHDRPEIDIVLVGSDSLETVKRTHSTYFRGFTAHDLQQLVDSLSFE
>NZ_CP040505|1478075:1511567|1508148_1509048_+|WP_051057877.1|DBSCAN-SWA
MFSRLDTHYHFDFIDEGERLPFLRACTKRGLRLVAQTLLPSYFHENLEWAANARRDAGANLGAGGDEGAEVHWPAWSLGLHPWYIEEAHIGEELKLFGSGLEKTRLIGEVGLDFAPRRLEAVPAQLQVEVFSEVVTMSCEAAVRGGVHGGQAQKSSPLPHVLSIHAVRAASTVLDLLEGSDALGRGLVPVFHRFSGTSDDLTRLIRMGGYISINPAMLTSKRGRAYIRQVPEERLLVETDLPAAPAASKEGEGEVKSGERHCEELDETLNRILTSVEELRKEDPREVLDKTQARLYGGF
>NZ_CP040505|1478075:1511567|1502069_1504028_+|WP_005964776.1|DBSCAN-SWA
MALGRSAGATTPDHRHPVDQVPPAGKLAVLGIQHVLAFYAGAVVVPLVIASALGLDEQTLVHLINADLFTCGIATIIQSAGLGPKIGVKLPLIQGVTFTAVSPLIAIGIGASPAGADPKTGLATMYGSIIAAGLATFLIAPYFAKLLRFFPPVVTGTLLTVMGITLIAVSAGDIVSLASYAPEGADLGALTLKGLAYAMGTLAIIVAIQKIFKGFMSTISVLLGLVVMTIIAFILKDASFSNVAQSSWVGITSPFFFGLPKFSVAAIISMLIVMAVTAVETTGDVFATGEVVGKRITPEHVARALRADGLSTLLGGVLNSFPYTCFAQNVGLVRLTRVKSRWVVTAAGVIMIILGLLPKAGAIVASIPAPVIGGASLAMFANVAVVGIQTLGKVDMRDNRNAVIVSTSVGLAMLVTLKPEIATMVPSWLQIIFGSGVTIGALSAFILNLLFFHLGKQQGPDVALVDGRAVSIDEVNSMERDVFIRAFSGMYEGATWPVERAWEQRPFADTTELRRAFEDEVLVASLEEQEALIAAYSDIAELAAGKGDERANQDTAALGLGEFDDKELEDLTAASAAYREKFHRPLVVCVTNLADREHLISSAWKRVETSKAREARFALGEVIDIADERFTQLVADANPIRTAWARKMDQVD
>NZ_CP040505|1478075:1511567|1504244_1505228_-|WP_040314405.1|DBSCAN-SWA
MTIDQNTTTLSASSDSSSKREDRSAKIAVTVFPLIILGALIGGLLFPAQTAPLVKGVNYALMVIMFGMGLTLTPPDFGVIARRPWPVLVGVLAQYIIMPLAALAVTWAFRLDPALAVGVILVGCAPGGTASNVVAYLAKGDVALSVAMTAVSTLLSPLVTPILTKYLAGQYMPVDAVAMAKSIMMIVFIPVVLGLLLRSFLPKLVEVILPALPWISVFGISYAVIALVGASSTRILSAGLVVLAVVIVHNGLGLALGYFAAKGLKVGEKAARTTAIEVGMQNSGLAATLGATYFTPEAAVPGAVFSVWHNVSGSALAAFFQRRPITD
>NZ_CP040505|1478075:1511567|1499285_1501088_-|WP_005964769.1|DBSCAN-SWA
MTAAQDRHFPSRASTAHHLSHSSSKRARRGAEGALRAWQAAALRQYMSQEPRDFLAVATPGAGKTTFALRIALELMGAGIVDKLTVVCPTEHLKGQWADAAARVGIHIDPAFTNSQGRAGSHYDGVAVTYAQVAANPPVHAARTRAYPTLVILDEIHHAGDALSWGDGVREAFTDAKRRLALTGTPFRSDTSPIPFVRYEEDADGIRRSKADFTYGYGDALRESVVRPVLFMSYSGQMSWRTNSGDEMSARLGEPLTKDMMKQAWRTALDPKGEWIPAVLRAADLRLEEVRRQVPDAGGLVIASDQTQARAYARHLRDITGRSATVVLSDDADASDRIDAFREGDDKWMVAVRMVSEGVDVPRLCVGVYATNTSTSLFFAQAVGRFVRVRRRGETATVFIPSVLPLLDLAGQMELERDHALDRPKPEGEDSMWNPEDAMVAEANREEKASGELLKGFEVLGADAEFDGVLFDGAAWGQGAEVGSEEEQEYLGIPGLLDAEQVTTLLRARQAEQAASARKQRSAARQREANSGISDHRVRAAKRKELQHLVASWSRRSGDTHAMVHSQLRNRCGGPEIAQATTEQIEARIALLRQWFVGRK
>NZ_CP040505|1478075:1511567|1497563_1497857_-|WP_005964764.1|protease|DBSCAN-SWA
MSSVTMIPKEDTRTRTIPVPSASWHTVVWDDPINLMGYVTSVFQRHFGYSSEKATRLMLEVHERGRAVVSTGMRERMEADVVAMHGYGLRATLEAER
>NZ_CP040505|1478075:1511567|1496971_1497547_-|WP_005964762.1|DBSCAN-SWA
MIGRFRYEDGAYRACIEPPYSTLIVRLMREILVVLDEPAEMNSFLLAATDLETGREAPEERALEYLLPAMSLDPEDASSLRALTEDFLRAEKSARLRQVAGRIERAERSECAELVIPADEVWEWLAALNDVRLGLAGELKLETDADVARIEELAGRALDGSREQAASVFYSILTWWQDSLISALNSSGVHG
>NZ_CP040505|1478075:1511567|1491572_1492589_-|WP_005964747.1|DBSCAN-SWA
MSLFLPLARGSVDPMVASREGFDARRALEEGAGVFAATDRGVVLTCADGADSSALRLVRLDSRLALELIDEGVGVYFLGRSSAGEVGIGLGLSTVGIHERVGELASLMSGEPVYWRHLRSAGHCLVGDDPAFALPLVSLAAWHARAGFCARCGQPVRSIQAGWASECSGCHHIEYPRQDPAIIVRVEDREGRVLLAHNAAWPEARHSLIAGFVEGGETPENAVIREVEEEVGLEVMAPEYRATQPWPFPRSQMMGFVAQLRSDAPREPEPDGVEIDQARFYSREEFAAALLSGQISAPGPASIAHALLVEWFGGPLPASPIDAGLRSSTGGLRSSTGW
>NZ_CP040505|1478075:1511567|1505327_1506164_+|WP_005964782.1|DBSCAN-SWA
MTIPSASSSSTPVSRKSRSRRRILTKKGWIPDQHGAWPMAILPPLLGIGAAGPHLIHLLLMCAWLSAFGAFHALELYWKTPQRRRGSVRPALVSWCGLTLLFGVPLLVIQPGFFAWAPYFAPLALIALIEVVRGKERAILTRVTSVGAAALMTPVAAARGLIAPLSPDLTQAWVLGTILGAYFIGTIPLVRSLIRGRKEMRWIIGSIIWHLVSFIGVAIAFMKGSVVLVLVPVWIALTLRAGAMPLLQRRGFALTPMRIGLGEMVWSLLVTACLLASV
>NZ_CP040505|1478075:1511567|1494081_1494210_-|WP_131247355.1|DBSCAN-SWA
MSATIRRLFARLHAYLTRERRQPSDAVQFCMDRPIYGALVAR
>NZ_CP040505|1478075:1511567|1494367_1495288_+|WP_005964756.1|DBSCAN-SWA
MLIDPRRLSHLLAVHRHGGVVAAADVLGLTPSAVSQQIRKLEEEVGLPLVERTPQGARITPAGHILVAGAQRIENELSEIAHDLRPMSGAVTGTLGIGAFQTVIRSVLLPLTAELSTTLPGVEVQIKETDEADGMGDLRAGRIDLLMLERDTAPGTPPTGFSDTAFIDEPWVLLSPENAPRVETERDLAKVEWLRLAPQTIGYHAMQRIVSSIPQAHWVPYEYINYEAAHALVRAGCGSTILPSMAVRGIPLDGMRVTRLPGFGFRRILVRHRKGEDRENSATGQVLTALFSWVAQHHEDWREATG
>NZ_CP040505|1478075:1511567|1501084_1501447_-|WP_040314201.1|DBSCAN-SWA
MPDALDEPTRPGAPTSPAGPSTHSSTGLLERTEVEKEKAPGDGDRFAHFVRRDKANSSMVTGQPVVALCGKVWIPSRDASKYPVCPTCKELRDSMGRNGRNWPFSDGGMMGKGSSGGSGQ
>NZ_CP040505|1478075:1511567|1478075_1478321_-|WP_083879493.1|transposase|DBSCAN-SWA
MHYGKPWQTPEQLAHAIDEHICFYNECRIKLTLGGKSPTQYRHARVAQNKRKLQKVSAFPFCCSLGNALDLVRLPRGVDVF
>NZ_CP040505|1478075:1511567|1510400_1511567_-|WP_131247423.1|transposase|DBSCAN-SWA
MSVDKRPKCPICRAPMNANGKTSSRTPRWRCRNCSFSTVLKRPDVTRRHDLEAFINYATGKTSQAERDGTLTGRSFRQRTSWCWQVPPPLPVMDGVIHDQVFIDGIFLSHSWVILIATDGRTPLNWVTAGRENATAYTQLLSPLPPPGIITTDGAGGALAAIRTLWGPDQPVQRCLVHVHRNNTVDLTHNPHTPAGKALKGLSHSLLRVTTMDEAAHWASLLAAFHTEYAHYLKERTYASQDPEKAAATGKKWWYTHERDRRVYYRLERLLKNKQLFTFLTDPGRPNLASTTNPIESLNAQIRALLRAHAGWNTTRQITAIHWFLAHHQHPINAATVLAEWDKHARQPHTIIPTTHKQQPRPDGPTHYDNAYSPDTGFHTRKGWAGRT
>NZ_CP040505|1478075:1511567|1478378_1478771_-|WP_131247407.1|integrase,transposase|DBSCAN-SWA
MEVRRSKKKCQYSSDQGEVSSGSDNVVQRRFHAPVPNFLWLTDISVFATDKGSLYLSTIRDCFDGMLVGYQTSIRPTMDLAEHTLLQACEKHYPRADGSLALHSDRGVHYRGRAWLGLTAKHNIARFMSK
>NZ_CP040505|1478075:1511567|1489507_1491529_-|WP_005964744.1|DBSCAN-SWA
MTILQPDALLDALDPDQRAVARQVTGPLAVLAGAGTGKTRAITYRIAYGSAIGAYPPDSVLAVTFTRRAAYEMRHRLAQLGVPRAQARTFHSAALRQLQHFWPTVIGGPLPQIVPHKASLVSSAAARLGVAADKTMVRDLAAEVEWAKVSMVDSEHYLERVRSGHEPPTGMSGDDMARLLEVYEDAKAERGVIDFEDVLVMTCAMLQERADVAAKVRSQYRHFVVDEFQDVSLLQRRLLDLWLGDRHDVCVVGDVAQTIYSFAGADPRHLVDFPKAHKGARVLELTRDYRSTPQIVSIANRLMAGAGPSSGAVRLKSQRPSGAAVSFSTYASERAEAEGVADKIEALITAGTQPHSIAVLFRTNGQSQIFEEVLASRRIPLALRGTVPFFQREDVRNALRVLSTAARFPASEDSGLVSQVSAHLEAVGWSDEAPSGGAAQERWSNLRAIVSWAEESQAEDLLGFMGELEERAQYQVEPDQQGVELATLHAAKGLEWDAVFLVGASEGLIPISYAKTPAAREEERRLLYVGITRARNLLDISWAKSKGQDSRSANTRTKLLEGIWPKESTRRSAPAHARVPAKEAARHFEENACAEALALFESLKAWRKKVAALAGRPPYAVFTDQTLRDIALSQPGSRGELLAVKGIGEVKAEMFGEAVLALVRGEDVEVGLD
>NZ_CP040505|1478075:1511567|1492625_1493393_+|WP_005964749.1|DBSCAN-SWA
MTSTVQRADGREFDQLRPISLTRGWSGTGEGSVLVEFGNTRVLCVASLTEGVPRWRKGSGEGWVTAEYAMLPRATSERSQRESIKGKVSGRTQEISRLIGRSLRAIIDVSALGENTIVLDCDVLRADGGTRTASVTGAYVALAEAVRWGSEKGIITAKPGLKVLTDSVSAISVGIVEGAVMLDLPYEEDVRAQTDMNIVQTGSGDFIEVQGTAEHAPFNRDELAELLDYASIGNAQLADLQKRCLQAPAGEKVSL
>NZ_CP040505|1478075:1511567|1479695_1480862_+|WP_131247423.1|transposase|DBSCAN-SWA
MSVDKRPKCPICRAPMNANGKTSSRTPRWRCRNCSFSTVLKRPDVTRRHDLEAFINYATGKTSQAERDGTLTGRSFRQRTSWCWQVPPPLPVMDGVIHDQVFIDGIFLSHSWVILIATDGRTPLNWVTAGRENATAYTQLLSPLPPPGIITTDGAGGALAAIRTLWGPDQPVQRCLVHVHRNNTVDLTHNPHTPAGKALKGLSHSLLRVTTMDEAAHWASLLAAFHTEYAHYLKERTYASQDPEKAAATGKKWWYTHERDRRVYYRLERLLKNKQLFTFLTDPGRPNLASTTNPIESLNAQIRALLRAHAGWNTTRQITAIHWFLAHHQHPINAATVLAEWDKHARQPHTIIPTTHKQQPRPDGPTHYDNAYSPDTGFHTRKGWAGRT
>NZ_CP040505|1478075:1511567|1506205_1507171_-|WP_005964785.1|DBSCAN-SWA
MTASQRSLAHMPVTVFASVMGVGALSLAWKRAAHLWELPTWPSLLILAIAASLYVLVLCAYLAKWALHPKAARAELSHKMRMPFVPTITIATLVLATAGADVAPGLASIMWWVGALGHLLATALVLTAWSMRPDITSTDITPAWLIPIVGNVITPLAAPQIGNMDLAWFSFGVGMVFWGVFLTLIIERLLMHDKGIPAKLMPTYAIMVAPPAVALVAWSRLGHESDDPLSRILLSISWMFALLIGFQAKKLLEIPFALPYLAYTFPVAALAVASLVSAEALPGALYQWLALIALAVASIAIPIILVGVLVLTFKGRIFEAE
>NZ_CP040505|1478075:1511567|1493392_1494037_+|WP_005964752.1|DBSCAN-SWA
MSEESPRSCLEPRLVFATGNAHKISELEAILAPAWQGYAPGTIARMSDFNAPAPLEDGATFEENSLIKARALVEFTGLPALADDSGICVDIMGGAPGIFSARWCGAHGDDAANLDLLLAQLADVPGAHRGAAFVSAAALVLPDGREFVERGEVRGTLIRERRGEGGFGYDPIFVPEGYSRTSAELSPEEKNAISHRGKAFRALLPAIIEALKGK
>NZ_CP040505|1478075:1511567|1486765_1488310_+|WP_005964739.1|protease|DBSCAN-SWA
MNEDETPGPSPFDDFLRKLLGDEAAEEASRAMRAQGFDLSQLPEGFSDPAAMKAAANQFQFLMDSTTGPVNWRLVTDSAHQQIYTKGDPAPSAAQADRARTAMTVADLWLDTTSDFTPGSVERKVWTRSEWVDATLDTWKRICEPVAANVSRALGEALGSQFPSEAIGEEDLPSGFAQMIDQTRSMMPKLSAMMFAAQIGRALTALASEALGSTDVGIPLAKGPTTGLVVSNIEAFGDGLDIPFDEVLQFVAVRECAHRRLFASVPWLEGDLIRAVERYSANIEVDMTAITDAASLVDLSDPSSIDQALSGGVFELSISAEQKRALERLETILALIEGWVEVVTAQAIAPYLPHADQLREMMRRHRASGGPAEQVLGTLIGLKMRPRRARDAAKIFTLVEAEQGTEARDALWSHPDMVPSAAELDSPDTFLTIRRAALEQDADIDAALDALLAGTMGWAEGLTPEVDPEAETLAKAGLASLEDPCAQPTEDEAQQEGIEDDADSAQSDDTPQEH
>NZ_CP040505|1478075:1511567|1488519_1489482_+|WP_005964741.1|DBSCAN-SWA
MRLSTTPTVLRRGPGARQIGTDPGRSLGFTGLEELDALGLDELGRRSEGRGHGLPFLPGRVRTRLLAAGLLAAPLPRLGIRLVQPSVLALRIVEACAAHFEICLEIAGQTTSKPLAEELGDEWLAAPLSSALARRFGRIGAPVLLEKVPIPDCVLVNAERGHEPEKMRTLLIEDIPHLLLTRLEEGYEVGPLVLPGYSACAGCVSIEREEKDPFWSADLLCAPRIEEPMPTAASRSPRMPRHALEVATLLGLDALAAITHQHGRATRVFPEISWLDPHESRTGTIVRVFNDGSKSVDYVWPRPECGCGAAGDLGPARKDL
>NZ_CP040505|1478075:1511567|1485453_1486656_-|WP_131247353.1|DBSCAN-SWA
MSEQPSPLTPSTREPSTWLSRWDTAKPLQIRVRTLLSWVVALVLGAVLFIVPMPYVVESPGPTFDVGGSYRGKEMLSVSGVDPSNGGALHVDAAHEKGDGNGELRMVTVSEQGGPGRRLNLVQLINASLSETSQLTPYSTAYPDGVTMDQVDAAQSWMMKSSQSSADVAALEALGWTVPATTTIRGAAEGSDAAEKVRDGDVLLSITDEAGVVHPADSASMVFRLVKQTPAGSVLVLRVMRDGEQVELEVETIPDESHPQGSRLGIYLDVAPRFPLDVQVNLESVGGPSAGLVFSLAIIDKLTPGDLTGGHVIAATGTMSYDGEVGPIGGIVQKMHGAKRDGGEWFLAPALNCDEVVGNVPEGLSVVAVTTLGEAREAVEAIAAGQTGKLTSCESVAGAS
>NZ_CP040505|1478075:1511567|1495323_1496127_-|WP_005964758.1|DBSCAN-SWA
MRLTIIGATGSMSGPASPASCYLVQCPGLDPLTGEIRTWSIVLEMGPGSFGALWRHIDPRMIDALVLSHTHADHMGDIISLQVFRRWGPGSDLEPLPLAGPVGTLERIRQIDGTRLPDTYEGEFDIRTVRAGQSYRIGPMTLTPFPGIHTVESFGTRIVGPSDSSPSKTVSMFFTGDTDEAPAILEGARGVDLLLTEVGFTRADTVRGIHMDGVRAGRLAARAEVARLVATHIQPWTDLKVVESELREHWAGPLDFAMSQRVFTVGQ
>NZ_CP040505|1478075:1511567|1507387_1508164_+|WP_005964790.1|tRNA|DBSCAN-SWA
MPGERFARLELLLGTEGLNSLTKARVMVLGLGGVGSSCAEALARGGIGSLVLLDRDIIEESNINRQKLAFTSTLGREKAEVMAQIVADINPECTVFATRTYLDSRTLEQTLDRLPRPDYVLDCIDTLTQKLGIARWCAKEGIPLISSMGAANKFDPTQLHFCEVQESRHCHLARAMRRECRHRGIADLEVLSSQEAHPSFIAPKSWDANARLGSMSYMPPIMGQMLAGQVIQRLAGLSPMPTPPRLVDSWRGTPCSRG

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1472361:1472375	attL	NA	NA	NA	NA
WP_083879493.1|1478075_1478321_-|transposase	IS3 family transposase	NA	NA	NA	NA
WP_131247407.1|1478378_1478771_-|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_131247423.1|1479695_1480862_+|transposase	IS1249 family transposase	NA	NA	NA	NA
WP_131247409.1|1481529_1484688_-	UPF0182 family protein	NA	NA	NA	NA
WP_005964734.1|1484784_1485423_+	hypothetical protein	NA	NA	NA	NA
WP_131247353.1|1485453_1486656_-	peptidase S16	NA	NA	NA	NA
1486213:1486227	attR	NA	NA	NA	NA
WP_005964739.1|1486765_1488310_+|protease	zinc-dependent metalloprotease	NA	NA	NA	NA
WP_005964741.1|1488519_1489482_+	hypothetical protein	NA	NA	NA	NA
WP_005964744.1|1489507_1491529_-	ATP-dependent DNA helicase UvrD2	A0A2H4UW05	Bodo_saltans_virus	5.4e-11	22.8
WP_005964747.1|1491572_1492589_-	NAD(+) diphosphatase	NA	NA	NA	NA
WP_005964749.1|1492625_1493393_+	ribonuclease PH	NA	NA	NA	NA
WP_005964752.1|1493392_1494037_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	A0A0P0A2M4	Ugandan_cassava_brown_streak_virus	7.7e-12	32.1
WP_131247355.1|1494081_1494210_-	histidine kinase	NA	NA	NA	NA
WP_005964756.1|1494367_1495288_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005964758.1|1495323_1496127_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_005964760.1|1496126_1496960_-	glutamate racemase	NA	NA	NA	NA
WP_005964762.1|1496971_1497547_-	DUF2017 family protein	NA	NA	NA	NA
WP_005964764.1|1497563_1497857_-|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_005964766.1|1497938_1499279_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	4.3e-49	35.8
WP_005964769.1|1499285_1501088_-	DEAD/DEAH box helicase	I4AZM6	Saccharomonospora_phage	1.6e-86	44.2
WP_040314201.1|1501084_1501447_-	DUF3039 domain-containing protein	NA	NA	NA	NA
WP_005964774.1|1501547_1501832_-	DNA-binding protein HU	A0A1P8CWT5	Bacillus_phage	1.7e-11	46.1
WP_005964776.1|1502069_1504028_+	xanthine/uracil permease	Q9KX94	Enterobacteria_phage	4.7e-28	29.4
WP_040314405.1|1504244_1505228_-	bile acid:sodium symporter family protein	NA	NA	NA	NA
WP_005964782.1|1505327_1506164_+	YwiC-like family protein	NA	NA	NA	NA
WP_005964785.1|1506205_1507171_-	transporter	NA	NA	NA	NA
WP_005964790.1|1507387_1508164_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	NA	NA	NA	NA
WP_051057877.1|1508148_1509048_+	TatD family hydrolase	NA	NA	NA	NA
WP_040314412.1|1509061_1509337_-	hypothetical protein	NA	NA	NA	NA
WP_131247423.1|1510400_1511567_-|transposase	IS1249 family transposase	NA	NA	NA	NA