Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP040624 Staphylococcus aureus strain D592-HR plasmid pSaD592-HR, complete sequence 0 crisprs csa3 0 0 0 0
NZ_CP040623 Staphylococcus aureus strain D592-HR chromosome, complete genome 11 crisprs cas3,DEDDh,DinG,csa3,RT,WYL 10 3 7 2

Results visualization

1. NZ_CP040623
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040623_1 424299-424400 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040623_2 779550-779632 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040623_3 820497-820575 Unclear NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040623_4 825952-826221 Unclear NA
4 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040623_5 833278-833357 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040623_6 869191-869272 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040623_7 1658178-1658262 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040623_8 2090828-2090909 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040623_9 2220083-2220163 Orphan NA
1 spacers
csa3

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040623_10 2232404-2232489 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040623_11 2340442-2340522 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP040623_4 4.1|825988|22|NZ_CP040623|CRT 825988-826009 22 NZ_CP040623.1 778591-778612 0 1.0
NZ_CP040623_4 4.1|825988|22|NZ_CP040623|CRT 825988-826009 22 NZ_CP040623.1 869264-869285 0 1.0
NZ_CP040623_4 4.1|825988|22|NZ_CP040623|CRT 825988-826009 22 NZ_CP040623.1 1476676-1476697 0 1.0
NZ_CP040623_4 4.1|825988|22|NZ_CP040623|CRT 825988-826009 22 NZ_CP040623.1 1658254-1658275 0 1.0
NZ_CP040623_4 4.1|825988|22|NZ_CP040623|CRT 825988-826009 22 NZ_CP040623.1 1989943-1989964 0 1.0
NZ_CP040623_4 4.1|825988|22|NZ_CP040623|CRT 825988-826009 22 NZ_CP040623.1 186200-186221 0 1.0
NZ_CP040623_4 4.1|825988|22|NZ_CP040623|CRT 825988-826009 22 NZ_CP040623.1 309263-309284 0 1.0
NZ_CP040623_4 4.1|825988|22|NZ_CP040623|CRT 825988-826009 22 NZ_CP040623.1 652543-652564 0 1.0
NZ_CP040623_4 4.1|825988|22|NZ_CP040623|CRT 825988-826009 22 NZ_CP040623.1 1388129-1388150 0 1.0
NZ_CP040623_4 4.1|825988|22|NZ_CP040623|CRT 825988-826009 22 NZ_CP040623.1 1672788-1672809 0 1.0
NZ_CP040623_4 4.3|826105|22|NZ_CP040623|CRT 826105-826126 22 NZ_CP040623.1 778591-778612 0 1.0
NZ_CP040623_4 4.3|826105|22|NZ_CP040623|CRT 826105-826126 22 NZ_CP040623.1 869264-869285 0 1.0
NZ_CP040623_4 4.3|826105|22|NZ_CP040623|CRT 826105-826126 22 NZ_CP040623.1 1476676-1476697 0 1.0
NZ_CP040623_4 4.3|826105|22|NZ_CP040623|CRT 826105-826126 22 NZ_CP040623.1 1658254-1658275 0 1.0
NZ_CP040623_4 4.3|826105|22|NZ_CP040623|CRT 826105-826126 22 NZ_CP040623.1 1989943-1989964 0 1.0
NZ_CP040623_4 4.3|826105|22|NZ_CP040623|CRT 826105-826126 22 NZ_CP040623.1 186200-186221 0 1.0
NZ_CP040623_4 4.3|826105|22|NZ_CP040623|CRT 826105-826126 22 NZ_CP040623.1 309263-309284 0 1.0
NZ_CP040623_4 4.3|826105|22|NZ_CP040623|CRT 826105-826126 22 NZ_CP040623.1 652543-652564 0 1.0
NZ_CP040623_4 4.3|826105|22|NZ_CP040623|CRT 826105-826126 22 NZ_CP040623.1 1388129-1388150 0 1.0
NZ_CP040623_4 4.3|826105|22|NZ_CP040623|CRT 826105-826126 22 NZ_CP040623.1 1672788-1672809 0 1.0
NZ_CP040623_5 5.1|833302|32|NZ_CP040623|CRISPRCasFinder 833302-833333 32 NZ_CP040623.1 88385-88416 0 1.0
NZ_CP040623_5 5.1|833302|32|NZ_CP040623|CRISPRCasFinder 833302-833333 32 NZ_CP040623.1 869522-869553 0 1.0
NZ_CP040623_5 5.1|833302|32|NZ_CP040623|CRISPRCasFinder 833302-833333 32 NZ_CP040623.1 1672847-1672878 0 1.0
NZ_CP040623_5 5.1|833302|32|NZ_CP040623|CRISPRCasFinder 833302-833333 32 NZ_CP040623.1 2114902-2114933 0 1.0
NZ_CP040623_5 5.1|833302|32|NZ_CP040623|CRISPRCasFinder 833302-833333 32 NZ_CP040623.1 2505350-2505381 0 1.0
NZ_CP040623_8 8.1|2090852|34|NZ_CP040623|CRISPRCasFinder 2090852-2090885 34 NZ_CP040623.1 820496-820529 0 1.0
NZ_CP040623_8 8.1|2090852|34|NZ_CP040623|CRISPRCasFinder 2090852-2090885 34 NZ_CP040623.1 1176483-1176516 0 1.0
NZ_CP040623_3 3.1|820521|31|NZ_CP040623|CRISPRCasFinder 820521-820551 31 NZ_CP040623.1 1692661-1692691 1 0.968
NZ_CP040623_4 4.1|825988|22|NZ_CP040623|CRT 825988-826009 22 NZ_CP040623.1 983579-983600 1 0.955
NZ_CP040623_4 4.1|825988|22|NZ_CP040623|CRT 825988-826009 22 NZ_CP040623.1 1692516-1692537 1 0.955
NZ_CP040623_4 4.1|825988|22|NZ_CP040623|CRT 825988-826009 22 NZ_CP040623.1 1692749-1692770 1 0.955
NZ_CP040623_4 4.2|826046|23|NZ_CP040623|CRT 826046-826068 23 NZ_CP040623.1 779541-779563 1 0.957
NZ_CP040623_4 4.2|826046|23|NZ_CP040623|CRT 826046-826068 23 NZ_CP040623.1 779819-779841 1 0.957
NZ_CP040623_4 4.2|826046|23|NZ_CP040623|CRT 826046-826068 23 NZ_CP040623.1 1388245-1388267 1 0.957
NZ_CP040623_4 4.2|826046|23|NZ_CP040623|CRT 826046-826068 23 NZ_CP040623.1 1990001-1990023 1 0.957
NZ_CP040623_4 4.2|826046|23|NZ_CP040623|CRT 826046-826068 23 NZ_CP040623.1 2329613-2329635 1 0.957
NZ_CP040623_4 4.3|826105|22|NZ_CP040623|CRT 826105-826126 22 NZ_CP040623.1 983579-983600 1 0.955
NZ_CP040623_4 4.3|826105|22|NZ_CP040623|CRT 826105-826126 22 NZ_CP040623.1 1692516-1692537 1 0.955
NZ_CP040623_4 4.3|826105|22|NZ_CP040623|CRT 826105-826126 22 NZ_CP040623.1 1692749-1692770 1 0.955
NZ_CP040623_4 4.4|826163|23|NZ_CP040623|CRT 826163-826185 23 NZ_CP040623.1 779541-779563 1 0.957
NZ_CP040623_4 4.4|826163|23|NZ_CP040623|CRT 826163-826185 23 NZ_CP040623.1 779819-779841 1 0.957
NZ_CP040623_4 4.4|826163|23|NZ_CP040623|CRT 826163-826185 23 NZ_CP040623.1 1388245-1388267 1 0.957
NZ_CP040623_4 4.4|826163|23|NZ_CP040623|CRT 826163-826185 23 NZ_CP040623.1 1990001-1990023 1 0.957
NZ_CP040623_4 4.4|826163|23|NZ_CP040623|CRT 826163-826185 23 NZ_CP040623.1 2329613-2329635 1 0.957
NZ_CP040623_5 5.1|833302|32|NZ_CP040623|CRISPRCasFinder 833302-833333 32 NZ_CP040623.1 1388303-1388334 1 0.969
NZ_CP040623_6 6.1|869215|34|NZ_CP040623|CRISPRCasFinder 869215-869248 34 NZ_CP040623.1 1388225-1388258 1 0.971
NZ_CP040623_7 7.1|1658204|33|NZ_CP040623|CRISPRCasFinder 1658204-1658236 33 NZ_CP040623.1 1388226-1388258 1 0.97
NZ_CP040623_8 8.1|2090852|34|NZ_CP040623|CRISPRCasFinder 2090852-2090885 34 NZ_CP040623.1 1784877-1784910 1 0.971
NZ_CP040623_11 11.1|2340467|31|NZ_CP040623|CRISPRCasFinder 2340467-2340497 31 NZ_CP040623.1 833252-833282 1 0.968
NZ_CP040623_4 4.2|826046|23|NZ_CP040623|CRT 826046-826068 23 NZ_CP040623.1 1476559-1476581 2 0.913
NZ_CP040623_4 4.2|826046|23|NZ_CP040623|CRT 826046-826068 23 NZ_CP040623.1 2090909-2090931 2 0.913
NZ_CP040623_4 4.4|826163|23|NZ_CP040623|CRT 826163-826185 23 NZ_CP040623.1 1476559-1476581 2 0.913
NZ_CP040623_4 4.4|826163|23|NZ_CP040623|CRT 826163-826185 23 NZ_CP040623.1 2090909-2090931 2 0.913
NZ_CP040623_8 8.1|2090852|34|NZ_CP040623|CRISPRCasFinder 2090852-2090885 34 NZ_CP040623.1 1392599-1392632 2 0.941
NZ_CP040623_8 8.1|2090852|34|NZ_CP040623|CRISPRCasFinder 2090852-2090885 34 NZ_CP040623.1 2778954-2778987 2 0.941
NZ_CP040623_11 11.1|2340467|31|NZ_CP040623|CRISPRCasFinder 2340467-2340497 31 NZ_CP040623.1 88391-88421 2 0.935
NZ_CP040623_11 11.1|2340467|31|NZ_CP040623|CRISPRCasFinder 2340467-2340497 31 NZ_CP040623.1 869528-869558 2 0.935
NZ_CP040623_11 11.1|2340467|31|NZ_CP040623|CRISPRCasFinder 2340467-2340497 31 NZ_CP040623.1 1079557-1079587 2 0.935
NZ_CP040623_11 11.1|2340467|31|NZ_CP040623|CRISPRCasFinder 2340467-2340497 31 NZ_CP040623.1 1476612-1476642 2 0.935
NZ_CP040623_11 11.1|2340467|31|NZ_CP040623|CRISPRCasFinder 2340467-2340497 31 NZ_CP040623.1 1476728-1476758 2 0.935
NZ_CP040623_11 11.1|2340467|31|NZ_CP040623|CRISPRCasFinder 2340467-2340497 31 NZ_CP040623.1 1988595-1988625 2 0.935
NZ_CP040623_11 11.1|2340467|31|NZ_CP040623|CRISPRCasFinder 2340467-2340497 31 NZ_CP040623.1 2329666-2329696 2 0.935
NZ_CP040623_11 11.1|2340467|31|NZ_CP040623|CRISPRCasFinder 2340467-2340497 31 NZ_CP040623.1 2505356-2505386 2 0.935
NZ_CP040623_11 11.1|2340467|31|NZ_CP040623|CRISPRCasFinder 2340467-2340497 31 NZ_CP040623.1 385561-385591 2 0.935
NZ_CP040623_11 11.1|2340467|31|NZ_CP040623|CRISPRCasFinder 2340467-2340497 31 NZ_CP040623.1 652598-652628 2 0.935
NZ_CP040623_11 11.1|2340467|31|NZ_CP040623|CRISPRCasFinder 2340467-2340497 31 NZ_CP040623.1 1182084-1182114 2 0.935
NZ_CP040623_11 11.1|2340467|31|NZ_CP040623|CRISPRCasFinder 2340467-2340497 31 NZ_CP040623.1 1388184-1388214 2 0.935
NZ_CP040623_11 11.1|2340467|31|NZ_CP040623|CRISPRCasFinder 2340467-2340497 31 NZ_CP040623.1 1672842-1672872 2 0.935

1. spacer 4.1|825988|22|NZ_CP040623|CRT matches to position: 778591-778612, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

2. spacer 4.1|825988|22|NZ_CP040623|CRT matches to position: 869264-869285, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

3. spacer 4.1|825988|22|NZ_CP040623|CRT matches to position: 1476676-1476697, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

4. spacer 4.1|825988|22|NZ_CP040623|CRT matches to position: 1658254-1658275, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

5. spacer 4.1|825988|22|NZ_CP040623|CRT matches to position: 1989943-1989964, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

6. spacer 4.1|825988|22|NZ_CP040623|CRT matches to position: 186200-186221, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

7. spacer 4.1|825988|22|NZ_CP040623|CRT matches to position: 309263-309284, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

8. spacer 4.1|825988|22|NZ_CP040623|CRT matches to position: 652543-652564, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

9. spacer 4.1|825988|22|NZ_CP040623|CRT matches to position: 1388129-1388150, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

10. spacer 4.1|825988|22|NZ_CP040623|CRT matches to position: 1672788-1672809, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

11. spacer 4.3|826105|22|NZ_CP040623|CRT matches to position: 778591-778612, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

12. spacer 4.3|826105|22|NZ_CP040623|CRT matches to position: 869264-869285, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

13. spacer 4.3|826105|22|NZ_CP040623|CRT matches to position: 1476676-1476697, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

14. spacer 4.3|826105|22|NZ_CP040623|CRT matches to position: 1658254-1658275, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

15. spacer 4.3|826105|22|NZ_CP040623|CRT matches to position: 1989943-1989964, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

16. spacer 4.3|826105|22|NZ_CP040623|CRT matches to position: 186200-186221, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

17. spacer 4.3|826105|22|NZ_CP040623|CRT matches to position: 309263-309284, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

18. spacer 4.3|826105|22|NZ_CP040623|CRT matches to position: 652543-652564, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

19. spacer 4.3|826105|22|NZ_CP040623|CRT matches to position: 1388129-1388150, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

20. spacer 4.3|826105|22|NZ_CP040623|CRT matches to position: 1672788-1672809, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

21. spacer 5.1|833302|32|NZ_CP040623|CRISPRCasFinder matches to position: 88385-88416, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

22. spacer 5.1|833302|32|NZ_CP040623|CRISPRCasFinder matches to position: 869522-869553, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

23. spacer 5.1|833302|32|NZ_CP040623|CRISPRCasFinder matches to position: 1672847-1672878, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

24. spacer 5.1|833302|32|NZ_CP040623|CRISPRCasFinder matches to position: 2114902-2114933, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

25. spacer 5.1|833302|32|NZ_CP040623|CRISPRCasFinder matches to position: 2505350-2505381, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

26. spacer 8.1|2090852|34|NZ_CP040623|CRISPRCasFinder matches to position: 820496-820529, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

27. spacer 8.1|2090852|34|NZ_CP040623|CRISPRCasFinder matches to position: 1176483-1176516, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

28. spacer 3.1|820521|31|NZ_CP040623|CRISPRCasFinder matches to position: 1692661-1692691, mismatch: 1, identity: 0.968

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttccattgcc	Protospacer
*********************** *******

29. spacer 4.1|825988|22|NZ_CP040623|CRT matches to position: 983579-983600, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

30. spacer 4.1|825988|22|NZ_CP040623|CRT matches to position: 1692516-1692537, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

31. spacer 4.1|825988|22|NZ_CP040623|CRT matches to position: 1692749-1692770, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

32. spacer 4.2|826046|23|NZ_CP040623|CRT matches to position: 779541-779563, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

33. spacer 4.2|826046|23|NZ_CP040623|CRT matches to position: 779819-779841, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

34. spacer 4.2|826046|23|NZ_CP040623|CRT matches to position: 1388245-1388267, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

35. spacer 4.2|826046|23|NZ_CP040623|CRT matches to position: 1990001-1990023, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

36. spacer 4.2|826046|23|NZ_CP040623|CRT matches to position: 2329613-2329635, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

37. spacer 4.3|826105|22|NZ_CP040623|CRT matches to position: 983579-983600, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

38. spacer 4.3|826105|22|NZ_CP040623|CRT matches to position: 1692516-1692537, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

39. spacer 4.3|826105|22|NZ_CP040623|CRT matches to position: 1692749-1692770, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

40. spacer 4.4|826163|23|NZ_CP040623|CRT matches to position: 779541-779563, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

41. spacer 4.4|826163|23|NZ_CP040623|CRT matches to position: 779819-779841, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

42. spacer 4.4|826163|23|NZ_CP040623|CRT matches to position: 1388245-1388267, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

43. spacer 4.4|826163|23|NZ_CP040623|CRT matches to position: 1990001-1990023, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

44. spacer 4.4|826163|23|NZ_CP040623|CRT matches to position: 2329613-2329635, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

45. spacer 5.1|833302|32|NZ_CP040623|CRISPRCasFinder matches to position: 1388303-1388334, mismatch: 1, identity: 0.969

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaaactgactttccgc	Protospacer
*******************.************

46. spacer 6.1|869215|34|NZ_CP040623|CRISPRCasFinder matches to position: 1388225-1388258, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

47. spacer 7.1|1658204|33|NZ_CP040623|CRISPRCasFinder matches to position: 1388226-1388258, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** ************

48. spacer 8.1|2090852|34|NZ_CP040623|CRISPRCasFinder matches to position: 1784877-1784910, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttgtgttgg	Protospacer
*************************.********

49. spacer 11.1|2340467|31|NZ_CP040623|CRISPRCasFinder matches to position: 833252-833282, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

50. spacer 4.2|826046|23|NZ_CP040623|CRT matches to position: 1476559-1476581, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

51. spacer 4.2|826046|23|NZ_CP040623|CRT matches to position: 2090909-2090931, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

52. spacer 4.4|826163|23|NZ_CP040623|CRT matches to position: 1476559-1476581, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

53. spacer 4.4|826163|23|NZ_CP040623|CRT matches to position: 2090909-2090931, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

54. spacer 8.1|2090852|34|NZ_CP040623|CRISPRCasFinder matches to position: 1392599-1392632, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtggaatttcttatcgaaattctctgtgttgg	Protospacer
****.********* *******************

55. spacer 8.1|2090852|34|NZ_CP040623|CRISPRCasFinder matches to position: 2778954-2778987, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttttgttgg	Protospacer
*************************.* ******

56. spacer 11.1|2340467|31|NZ_CP040623|CRISPRCasFinder matches to position: 88391-88421, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

57. spacer 11.1|2340467|31|NZ_CP040623|CRISPRCasFinder matches to position: 869528-869558, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

58. spacer 11.1|2340467|31|NZ_CP040623|CRISPRCasFinder matches to position: 1079557-1079587, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

59. spacer 11.1|2340467|31|NZ_CP040623|CRISPRCasFinder matches to position: 1476612-1476642, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

60. spacer 11.1|2340467|31|NZ_CP040623|CRISPRCasFinder matches to position: 1476728-1476758, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

61. spacer 11.1|2340467|31|NZ_CP040623|CRISPRCasFinder matches to position: 1988595-1988625, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

62. spacer 11.1|2340467|31|NZ_CP040623|CRISPRCasFinder matches to position: 2329666-2329696, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

63. spacer 11.1|2340467|31|NZ_CP040623|CRISPRCasFinder matches to position: 2505356-2505386, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

64. spacer 11.1|2340467|31|NZ_CP040623|CRISPRCasFinder matches to position: 385561-385591, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

65. spacer 11.1|2340467|31|NZ_CP040623|CRISPRCasFinder matches to position: 652598-652628, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

66. spacer 11.1|2340467|31|NZ_CP040623|CRISPRCasFinder matches to position: 1182084-1182114, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

67. spacer 11.1|2340467|31|NZ_CP040623|CRISPRCasFinder matches to position: 1388184-1388214, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

68. spacer 11.1|2340467|31|NZ_CP040623|CRISPRCasFinder matches to position: 1672842-1672872, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP040623_4 4.2|826046|23|NZ_CP040623|CRT 826046-826068 23 AP014226 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS *** 28490-28512 3 0.87
NZ_CP040623_4 4.2|826046|23|NZ_CP040623|CRT 826046-826068 23 AP014225 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS *** 24653-24675 3 0.87
NZ_CP040623_4 4.4|826163|23|NZ_CP040623|CRT 826163-826185 23 AP014226 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS *** 28490-28512 3 0.87
NZ_CP040623_4 4.4|826163|23|NZ_CP040623|CRT 826163-826185 23 AP014225 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS *** 24653-24675 3 0.87
NZ_CP040623_10 10.1|2232430|34|NZ_CP040623|CRISPRCasFinder 2232430-2232463 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
NZ_CP040623_10 10.1|2232430|34|NZ_CP040623|CRISPRCasFinder 2232430-2232463 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765

1. spacer 4.2|826046|23|NZ_CP040623|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

2. spacer 4.2|826046|23|NZ_CP040623|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

3. spacer 4.4|826163|23|NZ_CP040623|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

4. spacer 4.4|826163|23|NZ_CP040623|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

5. spacer 10.1|2232430|34|NZ_CP040623|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **  

6. spacer 10.1|2232430|34|NZ_CP040623|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 757669 : 765490 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 777461 : 792102 17 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 877603 : 934519 85 Staphylococcus_phage(68.06%) integrase,transposase,head,portal,capsid,tail,holin,terminase,plate attL 875691:875707|attR 910339:910355
DBSCAN-SWA_4 1081067 : 1089540 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_5 1707847 : 1716890 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_6 1846884 : 1909093 60 Staphylococcus_phage(95.65%) tRNA,protease NA
DBSCAN-SWA_7 2013974 : 2095792 107 Staphylococcus_phage(88.16%) protease,integrase,head,portal,capsid,holin,tail,terminase attL 2062433:2062450|attR 2086932:2086949
Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP040623.1|WP_000681968.1|2038599_2038776_-|hypothetical-protein 2038599_2038776_- 58 aa aa NA WHTH_GntR NA 2013974-2095792 yes
NZ_CP040623.1|WP_000990056.1|2039018_2039117_-|hypothetical-protein 2039018_2039117_- 32 aa aa NA WHTH_GntR NA 2013974-2095792 yes