CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP040648	Salmonella enterica subsp. enterica serovar Rough O:-:- strain PNCS009880 chromosome, complete genome	3 crisprs	WYL,DinG,cas3,DEDDh,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	29	11
NZ_CP040649	Salmonella enterica subsp. enterica serovar Rough O:-:- strain PNCS009880 plasmid p10-8700.1, complete sequence	0 crisprs	NA	0	0
NZ_CP040650	Salmonella enterica subsp. enterica serovar Rough O:-:- strain PNCS009880 plasmid p10-8700.2, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040648_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040648_1

2923249-2923358

Orphan

Consensus_repeat	Method
TTAAAAAAAGGTGGTACAGGGTGGGACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040648_1

>merge|NZ_CP040648|1|2923249-2923358|CRISPRCasFinder
TTAAAAAAAGGTGGTACAGGGTGGGACAAGTGGTACACGCAGAGCTGGCGAGGGTTACAGCGTCCCACCTTAGAGAATTTGATTAAAAAAAAGTGGTACAGGGTGGGACA

>NZ_CP040648|1|1|2923249-2923358|CRISPRCasFinder
TTAAAAAAAGGTGGTACAGGGTGGGACA	AGTGGTACACGCAGAGCTGGCGAGGGTTACAGCGTCCCACCTTAGAGAATTTGA
TTAAAAAAAAGTGGTACAGGGTGGGACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040648.1\|WP_000973738.1\|2927399_2927774_+\|PTS-glucitol/sorbitol-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|226254
NZ_CP040648.1\|WP_001098984.1\|2927770_2928751_+\|PTS-glucitol/sorbitol-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|226255
NZ_CP040648.1\|WP_001542208.1\|2915829_2916894_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|170049
NZ_CP040648.1\|WP_000776032.1\|2931345_2931981_-\|3-hexulose-6-phosphate-synthase	unknown	unknown	gnl\|CDD\|132172
NZ_CP040648.1\|WP_010989065.1\|2926033_2926390_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP040648.1\|WP_010989064.1\|2925061_2925880_+\|DUF4435-domain-containing-protein	unknown	unknown	gnl\|CDD\|373095
NZ_CP040648.1\|WP_001542209.1\|2916907_2917075_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|170049
NZ_CP040648.1\|WP_000749979.1\|2926484_2926769_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225957
NZ_CP040648.1\|WP_000889012.1\|2930069_2931272_+\|DUF3883-domain-containing-protein	unknown	unknown	gnl\|CDD\|379021
NZ_CP040648.1\|WP_000533858.1\|2910471_2911881_+\|TolC-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273829
NZ_CP040648.1\|WP_000196159.1\|2911877_2914058_+\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|274550
NZ_CP040648.1\|WP_001161781.1\|2919632_2920460_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040648.1\|WP_000480483.1\|2926881_2927403_+\|PTS-sorbitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226253
NZ_CP040648.1\|WP_010989057.1\|2914065_2915229_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP040648.1\|WP_010989063.1\|2917121_2917715_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040648.1\|WP_001520831.1\|2923733_2925017_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226459
NZ_CP040648.1\|WP_001520307.1\|2921161_2923231_+\|DUF927-domain-containing-protein	unknown	unknown	gnl\|CDD\|227806
NZ_CP040648.1\|WP_001033832.1\|2928761_2929775_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP040648.1\|WP_000701821.1\|2920910_2921126_+\|AlpA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225848
NZ_CP040648.1\|WP_000248794.1\|2918104_2919298_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376935

Protein	Function_ID	Function_description	E-value
NZ_CP040648.1\|WP_000973738.1\|2927399_2927774_+\|PTS-glucitol/sorbitol-transporter-subunit-IIA	gnl\|CDD\|226254	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism].	5.89598e-59
NZ_CP040648.1\|WP_001098984.1\|2927770_2928751_+\|PTS-glucitol/sorbitol-transporter-subunit-IIB	gnl\|CDD\|226255	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism].	1.31232e-179
NZ_CP040648.1\|WP_001520831.1\|2923733_2925017_+\|AAA-family-ATPase	gnl\|CDD\|226459	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only].	0
NZ_CP040648.1\|WP_000776032.1\|2931345_2931981_-\|3-hexulose-6-phosphate-synthase	gnl\|CDD\|132172	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase. Members of this protein family are 3-hexulose-6-phosphate synthase (HPS), or the HPS domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.	4.14833e-98
NZ_CP040648.1\|WP_010989065.1\|2926033_2926390_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.55924e-09
NZ_CP040648.1\|WP_010989064.1\|2925061_2925880_+\|DUF4435-domain-containing-protein	gnl\|CDD\|373095	pfam14491, DUF4435, Protein of unknown function (DUF4435). This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 285 and 362 amino acids in length. This domain is sometimes associated with AAA domains.	2.33424e-50
NZ_CP040648.1\|WP_001542209.1\|2916907_2917075_+\|hypothetical-protein	gnl\|CDD\|170049	PRK09692, PRK09692, integrase; Provisional.	2.20982e-13
NZ_CP040648.1\|WP_000889012.1\|2930069_2931272_+\|DUF3883-domain-containing-protein	gnl\|CDD\|379021	pfam13020, DUF3883, Domain of unknown function (DUF3883). This is a domain is uncharacterized. It is found on restriction endonucleases.	6.01438e-16
NZ_CP040648.1\|WP_000533858.1\|2910471_2911881_+\|TolC-family-outer-membrane-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	5.87074e-128
NZ_CP040648.1\|WP_000196159.1\|2911877_2914058_+\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|274550	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NZ_CP040648.1\|WP_000749979.1\|2926484_2926769_+\|transcriptional-regulator	gnl\|CDD\|225957	COG3423, Nlp, Predicted transcriptional regulator [Transcription].	5.31271e-38
NZ_CP040648.1\|WP_000480483.1\|2926881_2927403_+\|PTS-sorbitol-transporter-subunit-IIC	gnl\|CDD\|226253	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism].	2.29561e-79
NZ_CP040648.1\|WP_010989057.1\|2914065_2915229_+\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	3.18004e-97
NZ_CP040648.1\|WP_001542208.1\|2915829_2916894_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|170049	PRK09692, PRK09692, integrase; Provisional.	1.47537e-117
NZ_CP040648.1\|WP_001520307.1\|2921161_2923231_+\|DUF927-domain-containing-protein	gnl\|CDD\|227806	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair].	0
NZ_CP040648.1\|WP_001033832.1\|2928761_2929775_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	9.77409e-67
NZ_CP040648.1\|WP_000701821.1\|2920910_2921126_+\|AlpA-family-transcriptional-regulator	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	2.37497e-21
NZ_CP040648.1\|WP_000248794.1\|2918104_2919298_+\|hypothetical-protein	gnl\|CDD\|376935	pfam02810, SEC-C, SEC-C motif. The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.	3.20348e-07

>NZ_CP040648.1|WP_001520307.1|2921161_2923231_+|DUF927-domain-containing-protein
MKRAPFLCKQSPDRTLEVVILAGSLAWETSRVWRKDPDREDDVPPMVLGPNELADLSNLTIIRPDTLYVRVLRTGDISEEDLLKIAVKLAHAGVQMARLMSPDGELLENWTGQLERLRQERPSDILPDHFRLDEEALWFDKLTERRDGESDVQPQRICSPLRVTAITCDSHDGSYGRLLEWHTTTGQLRRWAMPMAMLSGNGEELRRILLENGLTNISTRPALRSLLCEYISRSLPGRRVTCVEKTGWHNGVYVLPDEVIGPDGDNVILQGSHYLTGGFAQAGTLAEWQEQVAALCAGNSRLVFAVCCALAAPLLRLTGTGGGGFHLRGESTDGKTTVMKVAASVCGGTDYWHSWRATGNALEGIASRHNDALLPLDELREVDPREAGMIAYMLANGQGKGRARTDGEVRNRRHWTLLLFSTGELSLAEHTERAGERIYAGMDVRMVQIPSDTGQHGAFEQLHGFASGQQFADTLCDRVARFHGTAFRAWLAFLTHDQDASTTLARELLRRYQNALMPDNAGNQVQRIVARFALLAAAGEIATLHGITGWQKGTAYEAVQICLHAWLNERGHIANQEDEGVLAQIKRFITAHQYSRFASWDGPDRPLNMAGFRRVEKDPLTGEEHTLFFILPEGWREICRGFSPARAARLCQEAECLQPGSDGKYQSQVRLPEIGKTRVYRLTSRILSI
>NZ_CP040648.1|WP_000701821.1|2920910_2921126_+|AlpA-family-transcriptional-regulator
MKIRADSNDAFPESGNVRMRQVVQFLAMSESSVYRLIKDTDFPRPVHLSSRLVVFDAAEIRQWQQRRTVIR
>NZ_CP040648.1|WP_001161781.1|2919632_2920460_-|hypothetical-protein
MQGLTMDDISLSIARNMFHLQVYESDGVRFEDLFSKIMYYKSPDFQQVKPYGNIGDRKNDGFIKGQGVYYQVYAPEDASNNVLAAVNKIKDDFEGLRDYWHDICPIKKYYFVLNDKYKGSLPQLHKELIVLQSDFNLIDTGVIVAKDLERELFNLPDDMIRSVVGHLPDIDHEEYMFVSGFTCFISAWINFEKIARHKVFSAKQPNRPLFIGKVVNALVKNKIISRQDATFIKKITEVRNSLVHGVSMLVPKKNEIDMLIFITEKIKPAGVCRLD
>NZ_CP040648.1|WP_000248794.1|2918104_2919298_+|hypothetical-protein
MVNYPYFSVNVLSGSINFVENDKVKLGRNDKCWCKSGLKYKKCHLDRDREMPVSKAEALKFSKSNSQRKACYAPASMHEDCDKRIVQAHTLSKSSSLKAIADSSNHVMGVVMNLPSLIKNNGRWVPEKIGINQASTFTGFCAVHDRILFSCLENEKFTGTDEQCFALMFRSLSKEIYAKEGGRRSSDFAKNADKGKLQAEQVYIQEFVSLHQSGLNAAITELNNLKTSLDRILLNRQFSEIESVVFTFSEPLPIAVSSILSPERDFDGTKIQDLNDLTVSAEQVCFNAFSSEGKGYVVFSWLGTSAIIRRFVRSLIKVQTDRIFNTLLYFFFTKAENTYSSPEWWDSLSDKQRENIGNMIMSGVDFFDNSTLRVDHSVDYNSAALAEIRYSNSEISS
>NZ_CP040648.1|WP_010989063.1|2917121_2917715_+|hypothetical-protein
MPLLEARHLALLLLGLDASQPANALPEEHQENYRILHDAISRTIKATGMVSAPANKRMFYADEMFALAWRLIDDELTPSEVKDRSLKAVMKLSRNSRGRKWLKTLGDDALPDLTASTQPSLRGMHKRDKARENTARLCWLLVQLLVEETDGRYGTSDKPASDQILRKLKTLAKEQELPSDGLGRGTFYEVLKMEREK
>NZ_CP040648.1|WP_001542209.1|2916907_2917075_+|hypothetical-protein
MLAHQKEDEIEAAYNRSDYLEQRRPLMQWWGNYVDAARRQALLGAEEPLQIVEGE
>NZ_CP040648.1|WP_001542208.1|2915829_2916894_+|tyrosine-type-recombinase/integrase
MPNQLKPLTNVEIAGAKPRSTDYELRDGEGLYLLVKTSGRKAWHFEYYHPVTKKRTKTSLGPYPVVTLAMARETRTKYRRLLYQGIDPRQHLAGIAEEKRIQNECTLEKVAEQWLKEKKRTSDLSEDHAKDVWRSLEMHVFPSLGNTPVTEIRPKMLKEHLTPLEEQGILETLRRVISRLNEIFRFAISEELIEFNPADNLVARFKKPKKQNMPALHPSELGRLMLALQNASIRKETRCLIEWELLTWVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVLQIMEPVSRHRPWVFPSIRKPLEHMHQQTANAALIRMGFGGELVAHGMRSRQDRRRRSFSP
>NZ_CP040648.1|WP_010989057.1|2914065_2915229_+|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MDDPDIQRERAFSGAGRIVLICSLLFLILGIWAWFGRLDEVSTGNGKVIPSSREQVLQSLDGGILAQLTVREGDRVQANQIVARLDPTRLASNVGESAAKYRASLASSARLTAEVNDLPLAFPAELNGWPDLIAAETRLYKSRRAQLADTEAELRDALASVNKELAITQRLEKSGAASHVEVLRLQRQKSDLGLKITDLRSQYYVQAREALSKANAEVDMLSAILKGREDSVTRLTVRSPVRGIVKNIQVTTIGGVIPPNGEMMEIVPVDDRLLIETRLSPRDIAFIHPGQRALVKITAYDYAIYGGLDGVVETISPDTIQDKVKPEIFYYRVFIRTHQDYLQNKSGRRFSIVPGMIATVDIKTGEKTIVDYLIKPFNRAKEALRER
>NZ_CP040648.1|WP_000196159.1|2911877_2914058_+|type-I-secretion-system-permease/ATPase
MTRAAPDVEEVLSERALSQWAQAISYVAGHYRVACSPGSIQANAPWLRGKSRTTALTQLARQAGLSFHAPDIDKTAFSQWRLPLVVELRDGQLLVIEHVNGEEAVDVFVIEEEGQRNRLTLSELLPEILYVAALRPLSALKDSRVDRYISRFKPDWMRELVLQDIRPYLPVMVAAFLINVLSLAGIVFSMQVYDRVIPAQSYPTLYVLSFGVLVAVLFGFLLREARTHIMDVLGKRADMRISDRVFGHALRLRNSAIPRSTGSFISQLRELEQIREMITSSTLATIVDLPFFFLFMIVLAIIAPPLAWIAPVAALLMILPGVALQKKLAVLANQAAHEATLRNAVLVESVQGLEDIKLMQAENRFLQQWNSYIRITGESGLRTRKLTQGLISWGMSVQSLVYAAVIMFGAPMVIEGSMTTGAVVAASMLGSRMIAPMANLCGVLARWQQVKAAKMGLDNIMQLPTETQHDDSLIHRDILHGHYLFENAQFRYHNDDQRIPLRLVRLEIMPGERIAILGRNGAGKSTLLQAMAGGLEMIQGDARLDNLSLSHIDMADLRRNIGFLSQNARLFFGTLRENLTLGAPHANDEQIFDALEVSGGAVFVRRLAKGLDHPIMEGGNGLSGGQRQSLLLARMLLRSPNIVLLDEPSASLDEHTEREFIQRLHQWLGNRTLVVATHRVPILELVERVVVLKEGQLVMDAPKAQALNADRMQSHRREWKNENQSA
>NZ_CP040648.1|WP_000533858.1|2910471_2911881_+|TolC-family-outer-membrane-protein
MGRVAPVAIVLAFALFHHQPRGAEAPPMITSEGLATDQMLPSLDGSAAELPLSAAAPGNLTLNDAVNRAVNWHPSIREAIGKLLAQNEQIEVAKSKYYPQVSAGVNNGYSNTYTDHGYSPSLVLSVSQMLYDFGKVASQVRAETAGAAQQQANVLLSIDTVAHETANAIVQTQSWQQMVEAAEEQLVALDSIGKLIRQRSDEGATSLSDVVQTEARIESARSQLAQYQANLDSAKASLMSWLGWNSLNGINNDFPAKLARSCETATPDDRLVPAVLAAWAQANVARANLDYASAQMTPTISLEPSVQHYLNDKYPSHEVLDKTQYSTWVKVEMPLYQGGGLTARRNAASHAVDAAQSTIQRTRLDVRQKLMEARSQAMSLASALQILRRQQQLSERTRELYQQQYLDLGSRPLLDVLNAEQEVYQARFAELQTESQLHQLQLNCLYNTGALRQAFALNHRSIQSVEIQP
>NZ_CP040648.1|WP_001520831.1|2923733_2925017_+|AAA-family-ATPase
MELRRISVNNLFGILNYDIDLGNSETIIITGPNGYGKTMLLKIIDNILNKNIDFFFDLRFEEIKFELDTILLCIEKQKNKNVAVTVVDYVNDKKRQEVFTLNKNKELDVDYFDEIYNKLLICDNIDSDPILKSYNHEEILNYYKIKKIKLHKEKHHKSDFLDKSIPNAELTFIKAQRIENIKNEKSAIESQANFLLELIKRAAEESAQISQRLDSTFPARLFDSINENISSTSINDRLIGIQRKRELFMKFGIIKSEDTFIPRKFSNATLGKEYSTVLNLYISDALEKLSPYEELFEKINLFVNLLNEKMLAFKEIKISNEHGFYFQSDNGERISLSNLSSGEQNQIVIYFDLIFKAKQNSVILIDEPEISLHVAWQKEFLDSIARIQKLNEFSKIIIATHSPQIVNNNWDITYDLFENNNKNMEGQ
>NZ_CP040648.1|WP_010989064.1|2925061_2925880_+|DUF4435-domain-containing-protein
MLLLFRSPKYSRKIFFTLEGESDIRFLNTHFADERIHYDSPCSGKPEVINAVQLLRSHGKQNVYGLCDADFDILEGNSYENIHFTDCHDLEMMLIEGGSFDKFISEFLKTSILRIHTLEDIRNNLKESIIDVTYKIGILKWLNFKNNLLLMFKGMKYDNFITFVDFSANIDIDNYIQHILDRSPRKPPHCDFNFLKKEYQLLYNKQADYKYVCNGHDFTYITMMAFHSEFSRDKNITQEKVESHLRIAYSATAFQRTNIYNELSGLIDSHNI
>NZ_CP040648.1|WP_010989065.1|2926033_2926390_-|helix-turn-helix-transcriptional-regulator
MPEDGCCPERDNSCMFRCRIAIVIGKRLKISRVRADLTQAELGALAGLDEESASARISSYEKEVHAPDFKLVCKLAAALDVPEAYFYAVDDELAELILQYHRFKKNNPGSTLILSGNI
>NZ_CP040648.1|WP_000749979.1|2926484_2926769_+|transcriptional-regulator
MKKSTTKDWHPADIVAALHKRGTSLAKLSREAGLASSTLSNTLTRPWPKGEWLIAIALDMHPSEIWPGRYLNSSNKREPRKPLHPMTTTDNSGT
>NZ_CP040648.1|WP_000480483.1|2926881_2927403_+|PTS-sorbitol-transporter-subunit-IIC
MFLVSLAEGFIHLFQAAGKIFLDMMTGLIPMLICLLLAINFLMKLVGTVRMEKVAALLGRSRILTYGVLPVLGWFFMSSPGALTLGKLLPEKSKPGYEDALGTTAHPLTSLFPHVVPSELFVWLGVAAGVKALGLPVTSLALRYIAAAMLIGLIRGIITEYLFLRLSRRGNAP
>NZ_CP040648.1|WP_000973738.1|2927399_2927774_+|PTS-glucitol/sorbitol-transporter-subunit-IIA
MMIYCARITAIGLFVADGLTDKMLITFDSNGPKDCLDYSLSLEPSFREESLMILPGDRLLLAGHDYLVTAVGKGVQQALFELGHLTLVFDGDLKPCHTGAIHLSGPVPKLHDLHGNLVIEEGRP
>NZ_CP040648.1|WP_001098984.1|2927770_2928751_+|PTS-glucitol/sorbitol-transporter-subunit-IIB
MNTVLIPPGPGGYGKGLWLPVASGKKVLSLTGREIHPVAIEIGALTESEVVNGFSDIPPDNDILCVVINCAGSLRCGLYPQKGIPTINVLPTWRAGPLAQFISEDNYVSGVTIEQLVLVDTAEAPDGEPEPVSVTAPRIITTPPPARGAEKLVRMVERTGTAVGHVIALLFAASREAVDVSLRNVIPFMAFVSLLIALVQETALGSLIAHALTPLANSLWGLVLLSLICGIPFLSPVLGPGAAISQVIGVMIGTQIGAGAISPAFALPALFAINVQVGCDFVPVGLSMQEAKPETIAKGVPAFLLSRQLTGPLAVIIGWLFSLGLF
>NZ_CP040648.1|WP_001033832.1|2928761_2929775_+|Gfo/Idh/MocA-family-oxidoreductase
MNKIRAAVVGAGIYGKHHMNAYRHNPDTVLVAICDTDTERCDDLAMAYGIQGYTRLDRLLQQEAIDIVSVATPDPYHTESILTALRHGQHVLAEKPLATSVRECELIVEMAQQRDLLVGVDFHKRWDPAVMRIKAELENPETGCILRGHISMDDVITVPTQWLNWAGASSPVWFLGSHCFDLVRHLSGQEVVSVYAVGQKRLMVECGLDTFDSVQSLLTMADGSSWGVENSWVLPEGFPKDNDGRIDILCEATYIRSTSQHRGLEITTPALTLTPNSYFINYRNGVASGFGIDPINDFVRAVRHKAPYPVTAEDGLAVSRICEAVHRSLESGKPEDV
>NZ_CP040648.1|WP_000889012.1|2930069_2931272_+|DUF3883-domain-containing-protein
MLEFHNVPLKTILRRAIMSLPTNFNDILRFFEKDYDTAKEDNALSARGQFLQLYPLNHLKKMTLDDYVIGKGTASFCACVEVKTRTWANMQGATALKFGIYYGKSKSDPTVRYRFTQKFGDDDSTNKEVFANVKDALLDLIQSGKELDFRAIDENPLSQMFKAKILSLYFPEHFINICSKDHLKEIAMEMGIKEQQFISKYQHLLFKKKLEHKITRNWSNPKYMSFLYAQFIRKDLSSAPAVIVKKPQKRNHPEVNFEEITDNRDLIGKKSEEYALNWEKNRLIGLGYSKLAEEIDDRRNRPTYGYDFLSFNAPGDERYIEVKSIGRDGKEGAFRFFLSGNELTVSNLSNHSKNYYFYLVQYGKDGEPCNLYVKHAQDLYTNSEMSPCAYVVRFDLEEPA
>NZ_CP040648.1|WP_000776032.1|2931345_2931981_-|3-hexulose-6-phosphate-synthase
MKLQLALDELTLPEAMVFMDKVVDDVDIIEVGTPFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADMLAVHTGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVLLQHH

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Crispr_ID: NZ_CP040648_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040648_2

3124296-3125099

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder

12 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP040648_2

>merge|NZ_CP040648|2|3124296-3125099|CRISPRCasFinder,CRT,PILER-CR,CRT,CRISPRCasFinder
GTGTTTATCCCCGCTGGCGCGGGGAACATTTTTCAGCCCTTGTCGACTGCGGAACGCCCCTCGGTTTATCCCCGCTGGCGCGGGGAACACGCGAAATAGTGGGGAAAAACCCCTGGTTAACCCGGTTTATCCCCGCTGGCGCGGGAAACACTAGGCCTTGATACCATCGCTCGCACCTCGTCACGGTTTATCCCCGCTGGCGCGGGGAACACTCTTTTGATTTTGCTGCGATGTTATAACCAGACGGTTTATCCCCGCTGGCGCGGGGAACACTATCCACATATACCCGCAATCATATTCAAGAACGGTTTATCCCCGCTGGCGCGGGGAACACAATCACTGCGGGGGTATTTAGCGGAAACGGCTCGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACACAATTAAAGCCGAGGGTGGCACCGCGCCTTATTCGGTTTATCCCCGCTGGCGCGGGGAACACGCACCTCGAAACGGTTTTAAAACACTACCGTTTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGACCGATGGGGCCAACATCGCCGAACGTGGCGGTTTATCCCCGCTGGCGCGGGGAACACGTTACGTTCGGTAAATGGAAAGCGGCGAATATCGGTTTATCCCCGCTGGCGCGGGGAACACGTGGTTGCAGACCAATCAGCCCGCCAGCGGTTCGGTTTATCCCCGCTGGCGCGGGGAACACCAGCACGAAAAATTATTTACTGTCGTTGCTCACGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP040648|2|2|3124296-3124691|CRISPRCasFinder
GTGTTTATCCCCGCTGGCGCGGGGAACAT	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACACAATTAAAGCCGAGGGTGGCACCGCGCCTTATTCGGTTTATCCCCGCTGGCGCGGGGAACAC	GCACCTCGAAACGGTTTTAAAACACTACCGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA


>NZ_CP040648|2|1|3124296-3124690|CRT
GTGTTTATCCCCGCTGGCGCGGGGAACAT	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACAC	AATTAAAGCCGAGGGTGGCACCGCGCCTTATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCACCTCGAAACGGTTTTAAAACACTACCGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA


>NZ_CP040648|2|1|3124357-3125099|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATCGAGTAACGTGCGCTGGAACGCGTC
GGCGCGGGGAACACAATTAAAGCCGAGGG	TGGCACCGCGCCTTATTCGGTTTATCCCCGCT
GGCGCGGGGAACACGCACCTCGAAACGGT	TTTAAAACACTACCGTTTCGGTTTATCCCCGCT
GGCGCGGGGAACACTGGACCGATGGGGCC	AACATCGCCGAACGTGGCGGTTTATCCCCGCT
GGCGCGGGGAACACGTTACGTTCGGTAAA	TGGAAAGCGGCGAATATCGGTTTATCCCCGCT
GGCGCGGGGAACACGTGGTTGCAGACCAA	TCAGCCCGCCAGCGGTTCGGTTTATCCCCGCT
GGCGCGGGGAACACCAGCACGAAAAATTA	TTTACTGTCGTTGCTCACGGTTTATCCCCGCT
GGCGCGGGGAACAC

>NZ_CP040648|2|2|3124704-3125099|CRT
	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACAC	AATTAAAGCCGAGGGTGGCACCGCGCCTTATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCACCTCGAAACGGTTTTAAAACACTACCGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP040648|2|3|3124765-3125099|CRISPRCasFinder
	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACACAATTAAAGCCGAGGGTGGCACCGCGCCTTATTCGGTTTATCCCCGCTGGCGCGGGGAACAC	GCACCTCGAAACGGTTTTAAAACACTACCGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040648.1\|WP_000144832.1\|3125488_3126409_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP040648.1\|WP_000490481.1\|3123234_3124281_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP040648.1\|WP_001518648.1\|3125195_3125489_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP040648.1\|WP_000517480.1\|3119158_3119470_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP040648.1\|WP_000085114.1\|3127037_3127784_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP040648.1\|WP_001145543.1\|3134099_3135053_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP040648.1\|WP_000029738.1\|3130991_3133655_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP040648.1\|WP_001219245.1\|3117950_3118430_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP040648.1\|WP_000117946.1\|3128866_3129427_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP040648.1\|WP_001092263.1\|3120626_3122066_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP040648.1\|WP_001118109.1\|3119660_3120017_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP040648.1\|WP_000206415.1\|3127794_3128853_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP040648.1\|WP_001221538.1\|3116162_3116924_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP040648.1\|WP_001173663.1\|3120034_3120640_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP040648.1\|WP_000134246.1\|3116904_3117954_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP040648.1\|WP_000741650.1\|3118429_3119140_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP040648.1\|WP_000281486.1\|3126405_3127056_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP040648.1\|WP_000080404.1\|3135140_3135875_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP040648.1\|WP_000372384.1\|3122075_3122984_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP040648.1\|WP_000368584.1\|3129423_3130980_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192

Protein	Function_ID	Function_description	E-value
NZ_CP040648.1\|WP_000144832.1\|3125488_3126409_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.21084e-157
NZ_CP040648.1\|WP_000490481.1\|3123234_3124281_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP040648.1\|WP_001518648.1\|3125195_3125489_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
NZ_CP040648.1\|WP_000517480.1\|3119158_3119470_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP040648.1\|WP_000085114.1\|3127037_3127784_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.90971e-48
NZ_CP040648.1\|WP_001145543.1\|3134099_3135053_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP040648.1\|WP_000029738.1\|3130991_3133655_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP040648.1\|WP_001219245.1\|3117950_3118430_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
NZ_CP040648.1\|WP_000117946.1\|3128866_3129427_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
NZ_CP040648.1\|WP_001092263.1\|3120626_3122066_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP040648.1\|WP_001118109.1\|3119660_3120017_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
NZ_CP040648.1\|WP_000206415.1\|3127794_3128853_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.67517e-131
NZ_CP040648.1\|WP_001221538.1\|3116162_3116924_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_CP040648.1\|WP_001173663.1\|3120034_3120640_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_CP040648.1\|WP_000134246.1\|3116904_3117954_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP040648.1\|WP_000741650.1\|3118429_3119140_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.67998e-119
NZ_CP040648.1\|WP_000281486.1\|3126405_3127056_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.11215e-74
NZ_CP040648.1\|WP_000080404.1\|3135140_3135875_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40487e-139
NZ_CP040648.1\|WP_000372384.1\|3122075_3122984_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP040648.1\|WP_000368584.1\|3129423_3130980_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0

>NZ_CP040648.1|WP_000490481.1|3123234_3124281_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP040648.1|WP_000372384.1|3122075_3122984_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP040648.1|WP_001092263.1|3120626_3122066_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTERRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP040648.1|WP_001173663.1|3120034_3120640_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP040648.1|WP_001118109.1|3119660_3120017_-|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP040648.1|WP_000517480.1|3119158_3119470_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP040648.1|WP_000741650.1|3118429_3119140_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLYDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP040648.1|WP_001219245.1|3117950_3118430_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP040648.1|WP_000134246.1|3116904_3117954_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP040648.1|WP_001221538.1|3116162_3116924_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NZ_CP040648.1|WP_001518648.1|3125195_3125489_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NZ_CP040648.1|WP_000144832.1|3125488_3126409_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NZ_CP040648.1|WP_000281486.1|3126405_3127056_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQIRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA
>NZ_CP040648.1|WP_000085114.1|3127037_3127784_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPLAPQLLEGSAAGVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NZ_CP040648.1|WP_000206415.1|3127794_3128853_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>NZ_CP040648.1|WP_000117946.1|3128866_3129427_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NZ_CP040648.1|WP_000368584.1|3129423_3130980_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>NZ_CP040648.1|WP_000029738.1|3130991_3133655_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP040648.1|WP_001145543.1|3134099_3135053_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP040648.1|WP_000080404.1|3135140_3135875_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG

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Crispr_ID: NZ_CP040648_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040648_3

3141231-3143518

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

37 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NZ_CP040648_3

>merge|NZ_CP040648|3|3141231-3143518|CRISPRCasFinder,CRT,PILER-CR
ACGGCTATCCTTGTTGGCGCGGGGAACACATCTTCATATTGCGTGACGCTGCCGATGAACGCGGTTTATCCCCGCTGGCGCGGGGAACACTCTTTATCAGCTAACCATTTCCAGAACTCGTCCGGTTTATCCCTGCTGGCGCGGGGAACACTATAATATGAATTAATTTTTGCGCATAACCTGCGGTTTATCCCCGCTGGCGCGGGGAACACTGCCCGTTCTGCCTCTTCGCACTCTCGATCAACGGTTTATCCCCGCTGGCGCGGGGAACACTGCGTAATGGGCTACCTGAACTTCACATATCCCGGTTTATCCCCGCTAGCGCGGGGAACATATTAAGCGCGCAAAGTTTGGGTTAATTGGACACGGTTTATCCCCGCTGGCGCGGGGAACACCGTATTCGTCACACAGCCCCGTCCAGAAATGACGGTTTATCCCCGCTGGCACGGGGAACACTAACGAACTGAATAAAATGTCAGAAAGTGACGCGGCTTATCCCCGCTGGCGCGGGGAACACGCAGCTTAGCGACGAAATTAAAACCGAACTCACCGGTTTATCCCCGCTGGCGCGGGGAACACTGCCAGTGACTACAGAAGCGTCGCTATCGGGGCGGTTTATCCCCGCTGGCGCGGGGAACACACCGATAAACAACCGCATAGCCTCTTTCGTTTCGATTTATCCCTGCTGGCGCGGGGAACACTGCTCAATAACGTCGTAAATAGCGTAAGCTGGCGGTTTATCCCCGCTGGCGCGGGGAACACTATTTCGCCTTCGGCACTGACGTCACCGTCAACGGTTTATCCCCGCTGGCGCGGGGAACACCGTATTCGTCACACAGCCCCGTCCAGAAATGACGGTTTATCCCCGCTGGCACGGGGAACACTAACGAACTGAATAAAATGTCAGAAAGTGACGCGGCTTATCCCCGCTGGCGCGGGGAACACGCAGCTTAGCGACGAAATTAAAACCGAACTCACCGGTTTATCCCCGCTGGCGCGGGGAACACTGCCAGTGACTACAGAAGCGTCGCTATCGGGGCGGTTTATCCCCGCTGGCGCGGGGAACACACCGATAAACAACCGCATAGCCTCTTTCGTTTCGATTTATCCCTGCTGGCGCGGGGAACACTGCGTAATGGGCTACCTGAACTTCACATATCCCGGTTTATCCCCGCTAGCGCGGGGAACATATTAAGCGCGCAAAGTTTGGGTTAATTGGACACGGTTTATCCCCGCTGGCGCGGGGAACACGTCGCGTTCGTTGCCGGTATAGACCAGCGTCACGGTTTATCCCCGCTGGCGCGGGGAACACATCGAATCGAAACCCCAGCCACAGAAATAATTCGGTTTATCCCCGCTGGCGCGGGGAACACATCGAATCGAAACCCCAGCCACAGAAATAATTCGGTTTATCCCCGCTGGCGCGGGGAACACAGGAACTAAACAGCCTGACCGTTGAGGATCTGCGGTTTATCCCCGCTGGCGCGGGGAACACACCGGACAAATCTTTTTTTTCCTGTTCCTGTTCGGTTTATCCCCGCTGGCGCGGGGAACACGGGCACTATGAACGGATCGGCGCTGATGCCGGCGGTTTATCCCCGCTGGCGCGGGGAACACGGTAAAGCCACACCATTTTTTATTGACCTCGCCGGTTTATCCCCGCTGGCGCGGGGAACACCTAGGAGGCGTAATGAATACTACGTATCAAAACGGTTTATCCCCGCTGGCGCGGGGAACACGTGGTGGCCTCAAATAAATTCGAGCGCTGGAGCGGTTTATCCCCGCTGGCGCGGGGAACACTCGACGTGGACGAGGAGTTACTCAACCGCTGCCGGTTTATCCCCGCTGGCGCGGGGAACACAGCGCCACATGGCCCACCGGCACCACCCGATCCGGTTTATCCCCGCTGGCGCGGGGAACACAAATGACCAAATCAGAAATCTTCACCAAAGCCCGGTTTATCCCCGCTGGCGCGGGGAACACTAATGGCCACAGTAAGTCAAACGGTTCTGGAACGGTTTATCCCCGCTGGCGCGGGGAACACGAGTCCGGGGGTTATATAGTTATTTAATGAGCCGGTTTATCCCCGCTGGCGCGGGGAACACGATGTAACTGATAGCGAAATATATTGGGATAACGGTTTATCCCCGCTGGCGCGGGGAACACGAAACGTAAACAGGGTAAGATACAACTCTGCACGGTTTATCCCCGCTGGCGCGGGGAACACTGTAAAGGGTGGTCTGGAAGGGGATCGGCAAACGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP040648|3|4|3141231-3143518|CRISPRCasFinder
ACGGCTATCCTTGTTGGCGCGGGGAACAC	ATCTTCATATTGCGTGACGCTGCCGATGAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCGTAATGGGCTACCTGAACTTCACATATCC
CGGTTTATCCCCGCTAGCGCGGGGAACAT	ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTATTCGTCACACAGCCCCGTCCAGAAATGA
CGGTTTATCCCCGCTGGCACGGGGAACAC	TAACGAACTGAATAAAATGTCAGAAAGTGACG
CGGCTTATCCCCGCTGGCGCGGGGAACAC	GCAGCTTAGCGACGAAATTAAAACCGAACTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCAGTGACTACAGAAGCGTCGCTATCGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCTCAATAACGTCGTAAATAGCGTAAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCGCCTTCGGCACTGACGTCACCGTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTATTCGTCACACAGCCCCGTCCAGAAATGA
CGGTTTATCCCCGCTGGCACGGGGAACAC	TAACGAACTGAATAAAATGTCAGAAAGTGACG
CGGCTTATCCCCGCTGGCGCGGGGAACAC	GCAGCTTAGCGACGAAATTAAAACCGAACTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCAGTGACTACAGAAGCGTCGCTATCGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCGTAATGGGCTACCTGAACTTCACATATCC
CGGTTTATCCCCGCTAGCGCGGGGAACAT	ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGAACTAAACAGCCTGACCGTTGAGGATCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAAAGCCACACCATTTTTTATTGACCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTAGGAGGCGTAATGAATACTACGTATCAAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGACGTGGACGAGGAGTTACTCAACCGCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCGCCACATGGCCCACCGGCACCACCCGATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAATGACCAAATCAGAAATCTTCACCAAAGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAATGGCCACAGTAAGTCAAACGGTTCTGGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGTCCGGGGGTTATATAGTTATTTAATGAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATGTAACTGATAGCGAAATATATTGGGATAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAAACGTAAACAGGGTAAGATACAACTCTGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTAAAGGGTGGTCTGGAAGGGGATCGGCAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP040648|3|3|3141231-3143518|CRT
ACGGCTATCCTTGTTGGCGCGGGGAACAC	ATCTTCATATTGCGTGACGCTGCCGATGAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCGTAATGGGCTACCTGAACTTCACATATCC
CGGTTTATCCCCGCTAGCGCGGGGAACAT	ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTATTCGTCACACAGCCCCGTCCAGAAATGA
CGGTTTATCCCCGCTGGCACGGGGAACAC	TAACGAACTGAATAAAATGTCAGAAAGTGACG
CGGCTTATCCCCGCTGGCGCGGGGAACAC	GCAGCTTAGCGACGAAATTAAAACCGAACTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCAGTGACTACAGAAGCGTCGCTATCGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCTCAATAACGTCGTAAATAGCGTAAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCGCCTTCGGCACTGACGTCACCGTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTATTCGTCACACAGCCCCGTCCAGAAATGA
CGGTTTATCCCCGCTGGCACGGGGAACAC	TAACGAACTGAATAAAATGTCAGAAAGTGACG
CGGCTTATCCCCGCTGGCGCGGGGAACAC	GCAGCTTAGCGACGAAATTAAAACCGAACTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCAGTGACTACAGAAGCGTCGCTATCGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCGTAATGGGCTACCTGAACTTCACATATCC
CGGTTTATCCCCGCTAGCGCGGGGAACAT	ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGAACTAAACAGCCTGACCGTTGAGGATCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAAAGCCACACCATTTTTTATTGACCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTAGGAGGCGTAATGAATACTACGTATCAAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGACGTGGACGAGGAGTTACTCAACCGCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCGCCACATGGCCCACCGGCACCACCCGATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAATGACCAAATCAGAAATCTTCACCAAAGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAATGGCCACAGTAAGTCAAACGGTTCTGGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGTCCGGGGGTTATATAGTTATTTAATGAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATGTAACTGATAGCGAAATATATTGGGATAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAAACGTAAACAGGGTAAGATACAACTCTGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTAAAGGGTGGTCTGGAAGGGGATCGGCAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP040648|3|2|3141292-3143518|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCGTAATGGGCTACCTGAACTTCACATATCC
CGGTTTATCCCCGCTAGCGCGGGGAACAT	ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTATTCGTCACACAGCCCCGTCCAGAAATGA
CGGTTTATCCCCGCTGGCACGGGGAACAC	TAACGAACTGAATAAAATGTCAGAAAGTGACG
CGGCTTATCCCCGCTGGCGCGGGGAACAC	GCAGCTTAGCGACGAAATTAAAACCGAACTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCAGTGACTACAGAAGCGTCGCTATCGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCTCAATAACGTCGTAAATAGCGTAAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCGCCTTCGGCACTGACGTCACCGTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTATTCGTCACACAGCCCCGTCCAGAAATGA
CGGTTTATCCCCGCTGGCACGGGGAACAC	TAACGAACTGAATAAAATGTCAGAAAGTGACG
CGGCTTATCCCCGCTGGCGCGGGGAACAC	GCAGCTTAGCGACGAAATTAAAACCGAACTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCAGTGACTACAGAAGCGTCGCTATCGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCGTAATGGGCTACCTGAACTTCACATATCC
CGGTTTATCCCCGCTAGCGCGGGGAACAT	ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGAACTAAACAGCCTGACCGTTGAGGATCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAAAGCCACACCATTTTTTATTGACCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTAGGAGGCGTAATGAATACTACGTATCAAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTGGCCTCAAATAAATTCGAGCGCTGGAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGACGTGGACGAGGAGTTACTCAACCGCTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCGCCACATGGCCCACCGGCACCACCCGATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAATGACCAAATCAGAAATCTTCACCAAAGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAATGGCCACAGTAAGTCAAACGGTTCTGGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGTCCGGGGGTTATATAGTTATTTAATGAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATGTAACTGATAGCGAAATATATTGGGATAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAAACGTAAACAGGGTAAGATACAACTCTGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTAAAGGGTGGTCTGGAAGGGGATCGGCAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040648.1\|WP_000706479.1\|3156576_3157719_-\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
NZ_CP040648.1\|WP_001532579.1\|3149435_3149732_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_CP040648.1\|WP_001208013.1\|3140335_3141133_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP040648.1\|WP_000210449.1\|3147867_3148668_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP040648.1\|WP_000210863.1\|3146002_3147640_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP040648.1\|WP_000036734.1\|3144621_3145920_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP040648.1\|WP_000206415.1\|3127794_3128853_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP040648.1\|WP_001145543.1\|3134099_3135053_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP040648.1\|WP_000108313.1\|3139885_3140248_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP040648.1\|WP_000080404.1\|3135140_3135875_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP040648.1\|WP_000480218.1\|3149697_3150054_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
NZ_CP040648.1\|WP_001290660.1\|3135950_3137663_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP040648.1\|WP_001199961.1\|3143814_3144486_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP040648.1\|WP_000210927.1\|3137662_3139462_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP040648.1\|WP_000117946.1\|3128866_3129427_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP040648.1\|WP_000029738.1\|3130991_3133655_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP040648.1\|WP_000226838.1\|3150137_3152372_-\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP040648.1\|WP_000046849.1\|3152423_3153719_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP040648.1\|WP_000368584.1\|3129423_3130980_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP040648.1\|WP_000186400.1\|3153776_3156533_+\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848

Protein	Function_ID	Function_description	E-value
NZ_CP040648.1\|WP_000706479.1\|3156576_3157719_-\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
NZ_CP040648.1\|WP_001532579.1\|3149435_3149732_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	1.63617e-13
NZ_CP040648.1\|WP_001208013.1\|3140335_3141133_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	8.44116e-102
NZ_CP040648.1\|WP_000210449.1\|3147867_3148668_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.52469e-158
NZ_CP040648.1\|WP_000210863.1\|3146002_3147640_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP040648.1\|WP_000036734.1\|3144621_3145920_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP040648.1\|WP_000206415.1\|3127794_3128853_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.67517e-131
NZ_CP040648.1\|WP_001145543.1\|3134099_3135053_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP040648.1\|WP_000108313.1\|3139885_3140248_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP040648.1\|WP_000080404.1\|3135140_3135875_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40487e-139
NZ_CP040648.1\|WP_000480218.1\|3149697_3150054_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	6.12601e-20
NZ_CP040648.1\|WP_001290660.1\|3135950_3137663_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP040648.1\|WP_001199961.1\|3143814_3144486_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP040648.1\|WP_000210927.1\|3137662_3139462_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP040648.1\|WP_000117946.1\|3128866_3129427_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
NZ_CP040648.1\|WP_000029738.1\|3130991_3133655_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP040648.1\|WP_000226838.1\|3150137_3152372_-\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP040648.1\|WP_000046849.1\|3152423_3153719_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP040648.1\|WP_000368584.1\|3129423_3130980_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP040648.1\|WP_000186400.1\|3153776_3156533_+\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0

>NZ_CP040648.1|WP_001208013.1|3140335_3141133_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKVRPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDSSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP040648.1|WP_000108313.1|3139885_3140248_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP040648.1|WP_000210927.1|3137662_3139462_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPRVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRSFMQQRAAEGVEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP040648.1|WP_001290660.1|3135950_3137663_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENIAEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP040648.1|WP_000080404.1|3135140_3135875_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP040648.1|WP_001145543.1|3134099_3135053_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP040648.1|WP_000029738.1|3130991_3133655_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>NZ_CP040648.1|WP_000368584.1|3129423_3130980_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>NZ_CP040648.1|WP_000117946.1|3128866_3129427_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NZ_CP040648.1|WP_000206415.1|3127794_3128853_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>NZ_CP040648.1|WP_001199961.1|3143814_3144486_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP040648.1|WP_000036734.1|3144621_3145920_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP040648.1|WP_000210863.1|3146002_3147640_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP040648.1|WP_000210449.1|3147867_3148668_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSFPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP040648.1|WP_001532579.1|3149435_3149732_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MRMVKLTPKASEDLENIWHYGWQHFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFKRHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>NZ_CP040648.1|WP_000480218.1|3149697_3150054_-|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>NZ_CP040648.1|WP_000226838.1|3150137_3152372_-|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNIQAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>NZ_CP040648.1|WP_000046849.1|3152423_3153719_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NZ_CP040648.1|WP_000186400.1|3153776_3156533_+|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>NZ_CP040648.1|WP_000706479.1|3156576_3157719_-|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040648_2	2.10\|3124871\|32\|NZ_CP040648\|PILER-CR	3124871-3124902	32	CP051275	Salmonella phage SW-37, complete genome	24295-24326	1	0.969
NZ_CP040648_2	2.10\|3124871\|32\|NZ_CP040648\|PILER-CR	3124871-3124902	32	KC139516	Salmonella phage FSL SP-016, partial genome	43971-44002	1	0.969
NZ_CP040648_2	2.16\|3124856\|32\|NZ_CP040648\|CRT,CRISPRCasFinder	3124856-3124887	32	CP051275	Salmonella phage SW-37, complete genome	24295-24326	1	0.969
NZ_CP040648_2	2.16\|3124856\|32\|NZ_CP040648\|CRT,CRISPRCasFinder	3124856-3124887	32	KC139516	Salmonella phage FSL SP-016, partial genome	43971-44002	1	0.969
NZ_CP040648_3	3.5\|3141504\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141504-3141535	32	NZ_CP034699	Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence	177960-177991	1	0.969
NZ_CP040648_3	3.5\|3141504\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141504-3141535	32	NZ_CP034710	Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence	67131-67162	1	0.969
NZ_CP040648_3	3.19\|3142360\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142360-3142391	32	NZ_CP034699	Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence	177960-177991	1	0.969
NZ_CP040648_3	3.19\|3142360\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142360-3142391	32	NZ_CP034710	Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence	67131-67162	1	0.969
NZ_CP040648_3	3.11\|3141871\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141871-3141902	32	NZ_CP030204	Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence	130783-130814	2	0.938
NZ_CP040648_3	3.18\|3142299\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142299-3142330	32	NZ_CP030204	Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence	130783-130814	2	0.938
NZ_CP040648_2	2.10\|3124871\|32\|NZ_CP040648\|PILER-CR	3124871-3124902	32	JQ182729	Enterobacterial phage mEp390, complete genome	23951-23982	3	0.906
NZ_CP040648_2	2.16\|3124856\|32\|NZ_CP040648\|CRT,CRISPRCasFinder	3124856-3124887	32	JQ182729	Enterobacterial phage mEp390, complete genome	23951-23982	3	0.906
NZ_CP040648_2	2.7\|3124691\|28\|NZ_CP040648\|PILER-CR	3124691-3124718	28	NC_009927	Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence	337987-338014	5	0.821
NZ_CP040648_3	3.31\|3143092\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3143092-3143123	32	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	1387347-1387378	5	0.844
NZ_CP040648_3	3.31\|3143092\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3143092-3143123	32	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	1461559-1461590	5	0.844
NZ_CP040648_3	3.31\|3143092\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3143092-3143123	32	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	599340-599371	5	0.844
NZ_CP040648_3	3.13\|3141993\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141993-3142024	32	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	850282-850313	6	0.812
NZ_CP040648_3	3.13\|3141993\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141993-3142024	32	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	887728-887759	6	0.812
NZ_CP040648_3	3.13\|3141993\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141993-3142024	32	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	856045-856076	6	0.812
NZ_CP040648_3	3.13\|3141993\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141993-3142024	32	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	835457-835488	6	0.812
NZ_CP040648_3	3.13\|3141993\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141993-3142024	32	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	953948-953979	6	0.812
NZ_CP040648_3	3.13\|3141993\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141993-3142024	32	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	431895-431926	6	0.812
NZ_CP040648_3	3.13\|3141993\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141993-3142024	32	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	843687-843718	6	0.812
NZ_CP040648_3	3.13\|3141993\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141993-3142024	32	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	833486-833517	6	0.812
NZ_CP040648_3	3.13\|3141993\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141993-3142024	32	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	457962-457993	6	0.812
NZ_CP040648_3	3.13\|3141993\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141993-3142024	32	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1502459-1502490	6	0.812
NZ_CP040648_3	3.13\|3141993\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141993-3142024	32	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	1188725-1188756	6	0.812
NZ_CP040648_3	3.13\|3141993\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141993-3142024	32	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	1094940-1094971	6	0.812
NZ_CP040648_3	3.13\|3141993\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141993-3142024	32	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	574071-574102	6	0.812
NZ_CP040648_3	3.13\|3141993\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141993-3142024	32	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	758103-758134	6	0.812
NZ_CP040648_3	3.13\|3141993\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141993-3142024	32	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	92938-92969	6	0.812
NZ_CP040648_3	3.13\|3141993\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141993-3142024	32	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1622461-1622492	6	0.812
NZ_CP040648_3	3.13\|3141993\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141993-3142024	32	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	174090-174121	6	0.812
NZ_CP040648_3	3.13\|3141993\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141993-3142024	32	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	996227-996258	6	0.812
NZ_CP040648_3	3.13\|3141993\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141993-3142024	32	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	856529-856560	6	0.812
NZ_CP040648_3	3.13\|3141993\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141993-3142024	32	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1026857-1026888	6	0.812
NZ_CP040648_3	3.13\|3141993\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141993-3142024	32	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	801217-801248	6	0.812
NZ_CP040648_3	3.13\|3141993\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141993-3142024	32	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	887731-887762	6	0.812
NZ_CP040648_3	3.31\|3143092\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3143092-3143123	32	NC_012528	Deinococcus deserti VCD115 plasmid 3, complete sequence	121315-121346	6	0.812
NZ_CP040648_2	2.6\|3124630\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3124630-3124661	32	NZ_CP013929	Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence	188177-188208	7	0.781
NZ_CP040648_2	2.6\|3124630\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3124630-3124661	32	CP013931	Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence	192938-192969	7	0.781
NZ_CP040648_2	2.6\|3124630\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3124630-3124661	32	NC_019394	Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence	188204-188235	7	0.781
NZ_CP040648_3	3.13\|3141993\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141993-3142024	32	NZ_CP030829	Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence	360377-360408	7	0.781
NZ_CP040648_3	3.26\|3142787\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142787-3142818	32	NC_011366	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence	208454-208485	7	0.781
NZ_CP040648_3	3.26\|3142787\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142787-3142818	32	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	449563-449594	7	0.781
NZ_CP040648_3	3.26\|3142787\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142787-3142818	32	NZ_CP035001	Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence	167100-167131	7	0.781
NZ_CP040648_3	3.31\|3143092\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3143092-3143123	32	NZ_CP044078	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed1, complete sequence	135155-135186	7	0.781
NZ_CP040648_3	3.31\|3143092\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3143092-3143123	32	NZ_CP031081	Paracoccus yeei strain CCUG 32053 plasmid pYEE3, complete sequence	195902-195933	7	0.781
NZ_CP040648_3	3.31\|3143092\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3143092-3143123	32	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	581076-581107	7	0.781
NZ_CP040648_3	3.31\|3143092\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3143092-3143123	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	122557-122588	7	0.781
NZ_CP040648_3	3.31\|3143092\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3143092-3143123	32	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	529537-529568	7	0.781
NZ_CP040648_3	3.31\|3143092\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3143092-3143123	32	NZ_CP034156	Rhodococcus sp. NJ-530 plasmid unnamed4, complete sequence	327444-327475	7	0.781
NZ_CP040648_2	2.2\|3124386\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3124386-3124417	32	MN855803	Bacteriophage sp. isolate 108, partial genome	10057-10088	8	0.75
NZ_CP040648_2	2.5\|3124569\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3124569-3124600	32	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	8862-8893	8	0.75
NZ_CP040648_2	2.5\|3124569\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3124569-3124600	32	NZ_CP016476	Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence	151600-151631	8	0.75
NZ_CP040648_3	3.8\|3141687\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141687-3141718	32	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	135469-135500	8	0.75
NZ_CP040648_3	3.8\|3141687\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141687-3141718	32	NZ_CP031801	Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence	11654-11685	8	0.75
NZ_CP040648_3	3.13\|3141993\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141993-3142024	32	NC_012811	Methylorubrum extorquens AM1 megaplasmid, complete sequence	43093-43124	8	0.75
NZ_CP040648_3	3.13\|3141993\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141993-3142024	32	NZ_CP053442	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence	152052-152083	8	0.75
NZ_CP040648_3	3.15\|3142115\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142115-3142146	32	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	135469-135500	8	0.75
NZ_CP040648_3	3.15\|3142115\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142115-3142146	32	NZ_CP031801	Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence	11654-11685	8	0.75
NZ_CP040648_3	3.21\|3142482\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142482-3142513	32	NZ_CP028348	Novosphingobium sp. THN1 plasmid pTHN, complete sequence	1098771-1098802	8	0.75
NZ_CP040648_3	3.21\|3142482\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142482-3142513	32	NZ_CP014128	Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence	160189-160220	8	0.75
NZ_CP040648_3	3.21\|3142482\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142482-3142513	32	NC_014561	Pantoea vagans C9-1 plasmid pPag1, complete sequence	156443-156474	8	0.75
NZ_CP040648_3	3.21\|3142482\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142482-3142513	32	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	137983-138014	8	0.75
NZ_CP040648_3	3.33\|3143214\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3143214-3143245	32	NZ_CP014942	Rhodococcus sp. BH4 plasmid, complete sequence	462005-462036	8	0.75
NZ_CP040648_3	3.34\|3143275\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3143275-3143306	32	NC_028940	Pectobacterium bacteriophage PM2, complete genome	79087-79118	8	0.75
NZ_CP040648_3	3.10\|3141810\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141810-3141841	32	NZ_CP051686	Duganella sp. GN2-R2 plasmid unnamed1, complete sequence	45237-45268	9	0.719
NZ_CP040648_3	3.17\|3142238\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142238-3142269	32	NZ_CP051686	Duganella sp. GN2-R2 plasmid unnamed1, complete sequence	45237-45268	9	0.719
NZ_CP040648_3	3.21\|3142482\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142482-3142513	32	NZ_CP045722	Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence	332-363	9	0.719
NZ_CP040648_3	3.21\|3142482\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142482-3142513	32	NZ_CP022519	Pantoea vagans strain FBS135 plasmid pPant3, complete sequence	62976-63007	9	0.719
NZ_CP040648_3	3.21\|3142482\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142482-3142513	32	NZ_CP028351	Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence	144976-145007	9	0.719
NZ_CP040648_3	3.24\|3142665\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142665-3142696	32	MN062720	Microbacterium phage FuzzBuster, complete genome	19374-19405	9	0.719
NZ_CP040648_3	3.25\|3142726\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142726-3142757	32	MN694645	Marine virus AFVG_250M761, complete genome	31050-31081	9	0.719
NZ_CP040648_3	3.26\|3142787\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142787-3142818	32	DQ674738	Aeromonas phage phiO18P, complete genome	15707-15738	9	0.719
NZ_CP040648_3	3.26\|3142787\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142787-3142818	32	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	380725-380756	9	0.719
NZ_CP040648_3	3.26\|3142787\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142787-3142818	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	153785-153816	9	0.719
NZ_CP040648_3	3.27\|3142848\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142848-3142879	32	MN693046	Marine virus AFVG_25M413, complete genome	4323-4354	9	0.719
NZ_CP040648_3	3.27\|3142848\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142848-3142879	32	MN693008	Marine virus AFVG_117M9, complete genome	4316-4347	9	0.719
NZ_CP040648_3	3.30\|3143031\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3143031-3143062	32	NZ_CP021372	Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence	353298-353329	9	0.719
NZ_CP040648_3	3.30\|3143031\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3143031-3143062	32	AM749121	Streptococcus phage M102 complete genome	7893-7924	9	0.719
NZ_CP040648_3	3.30\|3143031\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3143031-3143062	32	NC_012884	Streptococcus phage M102, complete genome	7893-7924	9	0.719
NZ_CP040648_2	2.1\|3124325\|32\|NZ_CP040648\|CRISPRCasFinder,CRT	3124325-3124356	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1151729-1151760	10	0.688
NZ_CP040648_2	2.1\|3124325\|32\|NZ_CP040648\|CRISPRCasFinder,CRT	3124325-3124356	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	661429-661460	10	0.688
NZ_CP040648_2	2.10\|3124871\|32\|NZ_CP040648\|PILER-CR	3124871-3124902	32	NZ_AP022571	Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence	153476-153507	10	0.688
NZ_CP040648_2	2.16\|3124856\|32\|NZ_CP040648\|CRT,CRISPRCasFinder	3124856-3124887	32	NZ_AP022571	Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence	153476-153507	10	0.688
NZ_CP040648_3	3.1\|3141260\|32\|NZ_CP040648\|CRISPRCasFinder,CRT	3141260-3141291	32	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	146919-146950	10	0.688
NZ_CP040648_3	3.4\|3141443\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3141443-3141474	32	NZ_CP044072	Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence	99817-99848	10	0.688
NZ_CP040648_3	3.24\|3142665\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142665-3142696	32	NZ_CP019257	Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence	20006-20037	10	0.688
NZ_CP040648_3	3.24\|3142665\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142665-3142696	32	NZ_CP019274	Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence	9024-9055	10	0.688
NZ_CP040648_3	3.24\|3142665\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142665-3142696	32	NZ_CP019275	Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence	27130-27161	10	0.688
NZ_CP040648_3	3.24\|3142665\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142665-3142696	32	NZ_CP019279	Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence	19363-19394	10	0.688
NZ_CP040648_3	3.24\|3142665\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142665-3142696	32	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	23427-23458	10	0.688
NZ_CP040648_3	3.24\|3142665\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142665-3142696	32	NC_049342	Escherichia phage 500465-1, complete genome	24342-24373	10	0.688
NZ_CP040648_3	3.24\|3142665\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142665-3142696	32	KY271398	Klebsiella phage 4 LV-2017, complete genome	28240-28271	10	0.688
NZ_CP040648_3	3.24\|3142665\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142665-3142696	32	CP025900	Escherichia phage sp., complete genome	24342-24373	10	0.688
NZ_CP040648_3	3.29\|3142970\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142970-3143001	32	NZ_CP030264	Ensifer adhaerens strain Corn53 plasmid AB, complete sequence	1134787-1134818	10	0.688
NZ_CP040648_3	3.34\|3143275\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3143275-3143306	32	NZ_CP042995	Acinetobacter nosocomialis strain J1A plasmid unnamed1, complete sequence	68697-68728	10	0.688
NZ_CP040648_3	3.34\|3143275\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3143275-3143306	32	NZ_CP026129	Acinetobacter baumannii strain ABNIH28 plasmid pABA-2f10, complete sequence	43950-43981	10	0.688
NZ_CP040648_3	3.34\|3143275\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3143275-3143306	32	NZ_CP038501	Acinetobacter baumannii strain CIAT758 plasmid unnamed1, complete sequence	49131-49162	10	0.688
NZ_CP040648_3	3.34\|3143275\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3143275-3143306	32	NZ_CP046044	Acinetobacter towneri strain 19110F47 plasmid p19110F47-2, complete sequence	66631-66662	10	0.688
NZ_CP040648_3	3.34\|3143275\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3143275-3143306	32	NZ_CP048015	Acinetobacter towneri strain 205 plasmid pAT205, complete sequence	147167-147198	10	0.688
NZ_CP040648_3	3.26\|3142787\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142787-3142818	32	NZ_CP054036	Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence	234768-234799	11	0.656
NZ_CP040648_3	3.26\|3142787\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3142787-3142818	32	NZ_CP022568	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence	299431-299462	11	0.656
NZ_CP040648_3	3.37\|3143458\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3143458-3143489	32	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	1885546-1885577	11	0.656
NZ_CP040648_3	3.37\|3143458\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3143458-3143489	32	NZ_HG938356	Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence	56201-56232	11	0.656
NZ_CP040648_3	3.37\|3143458\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3143458-3143489	32	NZ_CP040822	Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence	83399-83430	11	0.656
NZ_CP040648_3	3.37\|3143458\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3143458-3143489	32	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	1487158-1487189	11	0.656
NZ_CP040648_3	3.37\|3143458\|32\|NZ_CP040648\|CRISPRCasFinder,CRT,PILER-CR	3143458-3143489	32	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	597699-597730	11	0.656

1. spacer 2.10|3124871|32|NZ_CP040648|PILER-CR matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 1, identity: 0.969

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
cggaccgatggggccaacatcgccgaacgtgg	Protospacer
.*******************************

2. spacer 2.10|3124871|32|NZ_CP040648|PILER-CR matches to KC139516 (Salmonella phage FSL SP-016, partial genome) position: , mismatch: 1, identity: 0.969

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
tggaccgatggggccaacatcgccgaatgtgg	Protospacer
***************************.****

3. spacer 2.16|3124856|32|NZ_CP040648|CRT,CRISPRCasFinder matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 1, identity: 0.969

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
cggaccgatggggccaacatcgccgaacgtgg	Protospacer
.*******************************

4. spacer 2.16|3124856|32|NZ_CP040648|CRT,CRISPRCasFinder matches to KC139516 (Salmonella phage FSL SP-016, partial genome) position: , mismatch: 1, identity: 0.969

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
tggaccgatggggccaacatcgccgaatgtgg	Protospacer
***************************.****

5. spacer 3.5|3141504|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034699 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence) position: , mismatch: 1, identity: 0.969

tgcgtaatgggctacctgaacttcacatatcc	CRISPR spacer
tgcgtagtgggctacctgaacttcacatatcc	Protospacer
******.*************************

6. spacer 3.5|3141504|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034710 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence) position: , mismatch: 1, identity: 0.969

tgcgtaatgggctacctgaacttcacatatcc	CRISPR spacer
tgcgtagtgggctacctgaacttcacatatcc	Protospacer
******.*************************

7. spacer 3.19|3142360|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034699 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence) position: , mismatch: 1, identity: 0.969

tgcgtaatgggctacctgaacttcacatatcc	CRISPR spacer
tgcgtagtgggctacctgaacttcacatatcc	Protospacer
******.*************************

8. spacer 3.19|3142360|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034710 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence) position: , mismatch: 1, identity: 0.969

tgcgtaatgggctacctgaacttcacatatcc	CRISPR spacer
tgcgtagtgggctacctgaacttcacatatcc	Protospacer
******.*************************

9. spacer 3.11|3141871|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030204 (Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence) position: , mismatch: 2, identity: 0.938

accgataaacaaccgcatagcctctttcgttt	CRISPR spacer
accgataaacaatcgcatggcctctttcgttt	Protospacer
************.*****.*************

10. spacer 3.18|3142299|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030204 (Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence) position: , mismatch: 2, identity: 0.938

accgataaacaaccgcatagcctctttcgttt	CRISPR spacer
accgataaacaatcgcatggcctctttcgttt	Protospacer
************.*****.*************

11. spacer 2.10|3124871|32|NZ_CP040648|PILER-CR matches to JQ182729 (Enterobacterial phage mEp390, complete genome) position: , mismatch: 3, identity: 0.906

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
tggacctatggggccaacatcaccgaacgtag	Protospacer
****** **************.********.*

12. spacer 2.16|3124856|32|NZ_CP040648|CRT,CRISPRCasFinder matches to JQ182729 (Enterobacterial phage mEp390, complete genome) position: , mismatch: 3, identity: 0.906

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
tggacctatggggccaacatcaccgaacgtag	Protospacer
****** **************.********.*

13. spacer 2.7|3124691|28|NZ_CP040648|PILER-CR matches to NC_009927 (Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence) position: , mismatch: 5, identity: 0.821

gatcgagtaacgtgcgctggaacgcgtc	CRISPR spacer
gattgaggaacgtgcgctggaacgatta	Protospacer
***.*** ****************  *

14. spacer 3.31|3143092|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

-agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
cagcggc-tatgccccagcggcaccacccgatc	Protospacer
 **** * .*** **** ***************

15. spacer 3.31|3143092|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

-agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
cagcggc-tatgccccagcggcaccacccgatc	Protospacer
 **** * .*** **** ***************

16. spacer 3.31|3143092|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.844

-agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
cagcggc-tatgccccagcggcaccacccgatc	Protospacer
 **** * .*** **** ***************

17. spacer 3.13|3141993|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

18. spacer 3.13|3141993|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

19. spacer 3.13|3141993|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

20. spacer 3.13|3141993|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

21. spacer 3.13|3141993|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

22. spacer 3.13|3141993|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

23. spacer 3.13|3141993|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

24. spacer 3.13|3141993|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

25. spacer 3.13|3141993|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

26. spacer 3.13|3141993|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

27. spacer 3.13|3141993|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

28. spacer 3.13|3141993|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

29. spacer 3.13|3141993|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

30. spacer 3.13|3141993|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

31. spacer 3.13|3141993|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

32. spacer 3.13|3141993|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

33. spacer 3.13|3141993|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

34. spacer 3.13|3141993|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

35. spacer 3.13|3141993|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

36. spacer 3.13|3141993|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

37. spacer 3.13|3141993|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

38. spacer 3.13|3141993|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

39. spacer 3.31|3143092|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NC_012528 (Deinococcus deserti VCD115 plasmid 3, complete sequence) position: , mismatch: 6, identity: 0.812

--agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
ccaacgc--catggccgacccgcaccacccgacc	Protospacer
  *.***  ******* *** ***********.*

40. spacer 2.6|3124630|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013929 (Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***

41. spacer 2.6|3124630|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to CP013931 (Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***

42. spacer 2.6|3124630|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NC_019394 (Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***

43. spacer 3.13|3141993|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030829 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence) position: , mismatch: 7, identity: 0.781

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
tacgtcgccttcggcaatgtcgtcaccgaaga	Protospacer
**. ************ ** ********  .*

44. spacer 3.26|3142787|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NC_011366 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence) position: , mismatch: 7, identity: 0.781

---gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ttcgagc---atgaccggatcggcgctggtgccga	Protospacer
   *.**   **** *************.*****.

45. spacer 3.26|3142787|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 7, identity: 0.781

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ggcggcggtgaaaggatcggcggtgatgccgg	Protospacer
**  .* .**** ********* *********

46. spacer 3.26|3142787|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 7, identity: 0.781

---gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ttcgagc---atgaccggatcggcgctggtgccga	Protospacer
   *.**   **** *************.*****.

47. spacer 3.31|3143092|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044078 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacccgatc--	CRISPR spacer
gccgccacatggcccaccgccaccagc--gtcgg	Protospacer
. ***************** ***** *  .**

48. spacer 3.31|3143092|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031081 (Paracoccus yeei strain CCUG 32053 plasmid pYEE3, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacccgatc--	CRISPR spacer
gccgccacatggcccaccgccaccagc--gtcgg	Protospacer
. ***************** ***** *  .**

49. spacer 3.31|3143092|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacc-cgatc	CRISPR spacer
cccgccacatggcccagcggctccatcgccat-	Protospacer
  ************** **** ***.* * **

50. spacer 3.31|3143092|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacc-cgatc	CRISPR spacer
cccgccacatggcccagcggctccatcgccat-	Protospacer
  ************** **** ***.* * **

51. spacer 3.31|3143092|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacc-cgatc	CRISPR spacer
cccgccacatggcccagcggctccatcgccat-	Protospacer
  ************** **** ***.* * **

52. spacer 3.31|3143092|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034156 (Rhodococcus sp. NJ-530 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.781

agcgccacatggcccaccggcaccacccgatc	CRISPR spacer
agccccacatggcgcaccggcacggcactagc	Protospacer
*** ********* ********* .* * * *

53. spacer 2.2|3124386|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 8, identity: 0.75

gcgaaatagtggggaaaaacccctggttaacc	CRISPR spacer
tttcaatattggggaaaaacccctcgttacct	Protospacer
 .  **** *************** **** *.

54. spacer 2.5|3124569|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.75

tatccacatatacccgcaatcatattcaagaa	CRISPR spacer
ggtaaatctaaacccgcaatcatattcaagag	Protospacer
 .*  *. ** ********************.

55. spacer 2.5|3124569|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016476 (Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

tatccacatatacccgcaatcatattcaagaa	CRISPR spacer
ggtaaatctaaacccgcaatcatattcaagag	Protospacer
 .*  *. ** ********************.

56. spacer 3.8|3141687|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 8, identity: 0.75

taacgaactgaataaaatgtcagaaagtgacg	CRISPR spacer
ggcagaactgaataaaatgtctgatagtgaat	Protospacer
 .  ***************** ** *****

57. spacer 3.8|3141687|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031801 (Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

taacgaactgaataaaatgtcagaaagtgacg	CRISPR spacer
aaatgaactgaatacaatgtcagacacgcgcg	Protospacer
 **.********** ********* *   .**

58. spacer 3.13|3141993|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
tcgaacaccttcgtcacggacgtcaccgtcga	Protospacer
*    *.****** *** ************.*

59. spacer 3.13|3141993|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053442 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence) position: , mismatch: 8, identity: 0.75

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
cattgcgccttcggcacggacgtccaccagaa	Protospacer
.*** ************ ******  *   **

60. spacer 3.15|3142115|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 8, identity: 0.75

taacgaactgaataaaatgtcagaaagtgacg	CRISPR spacer
ggcagaactgaataaaatgtctgatagtgaat	Protospacer
 .  ***************** ** *****

61. spacer 3.15|3142115|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031801 (Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

taacgaactgaataaaatgtcagaaagtgacg	CRISPR spacer
aaatgaactgaatacaatgtcagacacgcgcg	Protospacer
 **.********** ********* *   .**

62. spacer 3.21|3142482|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 8, identity: 0.75

-gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
cagcggatcc-ttgccggtatagaccagcgtat	Protospacer
 . ** .*.* ********************

63. spacer 3.21|3142482|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014128 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gaattttacgttgccggtgtagaccagtgtca	Protospacer
*   . * **********.********.****

64. spacer 3.21|3142482|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NC_014561 (Pantoea vagans C9-1 plasmid pPag1, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gaattttacgttgccggtgtagaccagtgtca	Protospacer
*   . * **********.********.****

65. spacer 3.21|3142482|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gatccggacgttgccggtattgaacagcgtcc	Protospacer
* . **  ************ ** *******

66. spacer 3.33|3143214|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

taatggccacagtaagtcaaacggttctggaa	CRISPR spacer
cggtggccacagtaaggcacacggttcggcag	Protospacer
...************* ** ******* * *.

67. spacer 3.34|3143275|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NC_028940 (Pectobacterium bacteriophage PM2, complete genome) position: , mismatch: 8, identity: 0.75

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
gctctcgtgtgttatatagttatttaatgata	Protospacer
*  ..** * ********************

68. spacer 3.10|3141810|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP051686 (Duganella sp. GN2-R2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tgccagtgactacagaagcgtcgctatcgggg	CRISPR spacer
cacgcctgactaccgaagtgtcgctatcggac	Protospacer
..*   ******* ****.***********.

69. spacer 3.17|3142238|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP051686 (Duganella sp. GN2-R2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tgccagtgactacagaagcgtcgctatcgggg	CRISPR spacer
cacgcctgactaccgaagtgtcgctatcggac	Protospacer
..*   ******* ****.***********.

70. spacer 3.21|3142482|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045722 (Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaacttgacgttgccggtatagatcagcgtca	Protospacer
.   .   ***************.********

71. spacer 3.21|3142482|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022519 (Pantoea vagans strain FBS135 plasmid pPant3, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaacttgacgttgccggtatagatcagcgtca	Protospacer
.   .   ***************.********

72. spacer 3.21|3142482|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028351 (Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaattttacgttgccggtgtagaccagtgtca	Protospacer
.   . * **********.********.****

73. spacer 3.24|3142665|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to MN062720 (Microbacterium phage FuzzBuster, complete genome) position: , mismatch: 9, identity: 0.719

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
tcctcctggacaggctgaccgttgacgatctg	Protospacer
     **..**** *********** ******

74. spacer 3.25|3142726|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to MN694645 (Marine virus AFVG_250M761, complete genome) position: , mismatch: 9, identity: 0.719

accggacaaatcttttttttcctgttcctgtt	CRISPR spacer
gcatcattaatcctttttttcctgttactgta	Protospacer
.*   *. ****.************* ****

75. spacer 3.26|3142787|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to DQ674738 (Aeromonas phage phiO18P, complete genome) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cagtttgctgaactgctcggcgctgatgccgg	Protospacer
 .*. .  ***** * ****************

76. spacer 3.26|3142787|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cctgacggtgaaccggtcggcgctgatgccgc	Protospacer
    ** .***** *.***************

77. spacer 3.26|3142787|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cagggcgtcgaactgatcggcgctcatgccgg	Protospacer
 .* .*  .**** ********** *******

78. spacer 3.27|3142848|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to MN693046 (Marine virus AFVG_25M413, complete genome) position: , mismatch: 9, identity: 0.719

ggtaaagccacaccattttttattgacctcgc	CRISPR spacer
tctgaaaccacaccattttttgttgaccctaa	Protospacer
  *.**.**************.******...

79. spacer 3.27|3142848|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to MN693008 (Marine virus AFVG_117M9, complete genome) position: , mismatch: 9, identity: 0.719

ggtaaagccacaccattttttattgacctcgc	CRISPR spacer
tctgaaaccacaccattttttgttgaccctaa	Protospacer
  *.**.**************.******...

80. spacer 3.30|3143031|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021372 (Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence) position: , mismatch: 9, identity: 0.719

tcgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
gttcagtggacgaggagttcctcacccgcacc	Protospacer
 .   ************** **** ****  *

81. spacer 3.30|3143031|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to AM749121 (Streptococcus phage M102 complete genome) position: , mismatch: 9, identity: 0.719

tcgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
ttgggctggaccaggagttactccaccgcctt	Protospacer
*.*.  ***** *********** *****. .

82. spacer 3.30|3143031|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NC_012884 (Streptococcus phage M102, complete genome) position: , mismatch: 9, identity: 0.719

tcgacgtggacgaggagttactcaaccgctgc	CRISPR spacer
ttgggctggaccaggagttactccaccgcctt	Protospacer
*.*.  ***** *********** *****. .

83. spacer 2.1|3124325|32|NZ_CP040648|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****

84. spacer 2.1|3124325|32|NZ_CP040648|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****

85. spacer 2.10|3124871|32|NZ_CP040648|PILER-CR matches to NZ_AP022571 (Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence) position: , mismatch: 10, identity: 0.688

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
cacctggatgggggccacatcgccgaacgagt	Protospacer
..  . ******* * ************* *

86. spacer 2.16|3124856|32|NZ_CP040648|CRT,CRISPRCasFinder matches to NZ_AP022571 (Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence) position: , mismatch: 10, identity: 0.688

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
cacctggatgggggccacatcgccgaacgagt	Protospacer
..  . ******* * ************* *

87. spacer 3.1|3141260|32|NZ_CP040648|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

atcttcatattgcgtgacgctgccgatgaacg	CRISPR spacer
tgccggatatggcgtgacgatgccgatgatgt	Protospacer
  *.  **** ******** *********

88. spacer 3.4|3141443|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tgcccgttctgcctcttcgcactctcgatcaa	CRISPR spacer
tgcccgttctgtctcttggcactgccaccttc	Protospacer
***********.***** ***** .*. ..

89. spacer 3.24|3142665|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019257 (Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

90. spacer 3.24|3142665|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019274 (Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

91. spacer 3.24|3142665|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019275 (Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

92. spacer 3.24|3142665|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019279 (Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

93. spacer 3.24|3142665|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

94. spacer 3.24|3142665|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NC_049342 (Escherichia phage 500465-1, complete genome) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

95. spacer 3.24|3142665|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to KY271398 (Klebsiella phage 4 LV-2017, complete genome) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

96. spacer 3.24|3142665|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to CP025900 (Escherichia phage sp., complete genome) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

97. spacer 3.29|3142970|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 10, identity: 0.688

gtggtggcctcaaataaattcgagcgctggag	CRISPR spacer
aaacttgcctcaaataaattcgcgcggtgttc	Protospacer
. . * **************** *** **

98. spacer 3.34|3143275|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042995 (Acinetobacter nosocomialis strain J1A plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******

99. spacer 3.34|3143275|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026129 (Acinetobacter baumannii strain ABNIH28 plasmid pABA-2f10, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******

100. spacer 3.34|3143275|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038501 (Acinetobacter baumannii strain CIAT758 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******

101. spacer 3.34|3143275|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046044 (Acinetobacter towneri strain 19110F47 plasmid p19110F47-2, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******

102. spacer 3.34|3143275|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048015 (Acinetobacter towneri strain 205 plasmid pAT205, complete sequence) position: , mismatch: 10, identity: 0.688

gagtccgggggttatatagttatttaatgagc	CRISPR spacer
ttttttgggggttatacagttaattaatgctg	Protospacer
   *..**********.***** ******

103. spacer 3.26|3142787|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054036 (Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence) position: , mismatch: 11, identity: 0.656

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
atagactaggagcggatcggcgctgatcggaa	Protospacer
. . **** **.***************   ..

104. spacer 3.26|3142787|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 11, identity: 0.656

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
atagactaggagcggatcggcgctgatcggaa	Protospacer
. . **** **.***************   ..

105. spacer 3.37|3143458|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccaaaaggttggtctggaaggcgatctcgtcg	Protospacer
.  ***** ************ ****     .

106. spacer 3.37|3143458|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccaaaaggttggtctggaaggcgatctcgtcg	Protospacer
.  ***** ************ ****     .

107. spacer 3.37|3143458|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040822 (Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccagaaggttggtctggaaggcgatcgagtcg	Protospacer
.  .**** ************ *****.   .

108. spacer 3.37|3143458|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccaaaaggttggtctggaaggcgatctcgtcg	Protospacer
.  ***** ************ ****     .

109. spacer 3.37|3143458|32|NZ_CP040648|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 11, identity: 0.656

tgtaaagggtggtctggaaggggatcggcaaa	CRISPR spacer
ccaaaaggttggtctggaaggcgatctcgtcg	Protospacer
.  ***** ************ ****     .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

244164 : 309493

uncultured_Mediterranean_phage(10.0%)

transposase,protease,tRNA,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000753958.1\|244164_245592_+\|protease	serine endoprotease DegP	A0A1B1IT49	uncultured_Mediterranean_phage	4.2e-26	29.2
WP_000929420.1\|245744_246902_+	DNA-binding transcriptional regulator CdaR	NA	NA	NA	NA
WP_000272193.1\|246990_247377_-	DUF3461 family protein	NA	NA	NA	NA
WP_000017194.1\|247623_248925_+	MHS family MFS transporter	NA	NA	NA	NA
WP_001186673.1\|248961_249786_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_001094519.1\|249815_252488_-	bifunctional uridylyltransferase/uridylyl-removing protein GlnD	NA	NA	NA	NA
WP_001018214.1\|252724_253519_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_000246886.1\|253969_254695_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_000808106.1\|254952_255804_+	elongation factor Ts	NA	NA	NA	NA
WP_000224567.1\|255948_256674_+	UMP kinase	NA	NA	NA	NA
WP_000622423.1\|256820_257378_+	ribosome recycling factor	NA	NA	NA	NA
WP_000811905.1\|257518_258715_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_000947413.1\|259027_259786_+	(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase	R9W0U9	Flavobacterium_phage	1.9e-25	42.2
WP_000922422.1\|259798_260656_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_000949017.1\|260667_262020_+\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_001240935.1\|262051_264466_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_000758966.1\|264588_265074_+	molecular chaperone Skp	NA	NA	NA	NA
WP_001139265.1\|265077_266103_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_000210741.1\|266208_266664_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_000565950.1\|266667_267456_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_000741212.1\|267455_268604_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_000569412.1\|268600_269197_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	1.5e-25	39.3
WP_001294826.1\|269220_272703_+	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	2.2e-209	36.9
WP_000055753.1\|272715_273675_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_000502119.1\|273869_274328_+\|transposase	IS200/IS605-like element IS200F family transposase	A0A1S5RHE3	Helicobacter_phage	5.1e-10	33.9
WP_000524168.1\|274566_276330_+	chitinase	NA	NA	NA	NA
WP_001021054.1\|276405_278547_+	lysine decarboxylase LdcC	NA	NA	NA	NA
WP_000901088.1\|278602_278992_+	VOC family protein	NA	NA	NA	NA
WP_000210056.1\|279054_280347_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_000062330.1\|280430_280691_-	Rho-binding antiterminator	NA	NA	NA	NA
WP_000955207.1\|280677_280896_-	YaeP family protein	NA	NA	NA	NA
WP_001185319.1\|281075_281621_+	YaeQ family protein	NA	NA	NA	NA
WP_000560527.1\|281617_282040_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_000252573.1\|282071_282773_+	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA
WP_001260683.1\|282846_284565_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_000093986.1\|284675_285383_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_001202315.1\|285379_285784_-	Rcs stress response system protein RcsF	NA	NA	NA	NA
WP_000874215.1\|285902_286718_-	methionine ABC transporter substrate-binding lipoprotein MetQ	NA	NA	NA	NA
WP_001287486.1\|286756_287410_-	methionine ABC transporter permease MetI	NA	NA	NA	NA
WP_000594021.1\|287402_288434_-	methionine ABC transporter ATP-binding protein MetN	G9BWD6	Planktothrix_phage	5.5e-36	40.2
WP_001051726.1\|288623_289190_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_000154871.1\|295445_296249_+	2,5-didehydrogluconate reductase DkgB	A0A1V0SDE7	Indivirus	2.1e-38	35.4
WP_000648534.1\|296269_297184_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001127538.1\|297288_298464_+	MFS transporter	NA	NA	NA	NA
WP_001230968.1\|298595_299396_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_000207224.1\|299473_300244_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000644706.1\|300299_301667_-	murein transglycosylase D	A0A0A7NU10	Lactobacillus_phage	1.4e-10	33.0
WP_001052775.1\|301738_302494_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_000801238.1\|302528_303251_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000917872.1\|303247_303715_-	ribonuclease HI	J9Q745	Salmonella_phage	4.7e-51	58.9
WP_001670675.1\|303778_304510_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	6.4e-39	39.9
WP_000367626.1\|305041_306097_-	ImpA family type VI secretion system protein	NA	NA	NA	NA
WP_000145244.1\|306107_307103_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_000371508.1\|307099_308983_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_000108007.1\|308998_309493_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_2

364138 : 407824

Salmonella_phage(90.16%)

lysis,terminase,integrase,tail,portal

attL 354908:354924|attR 416415:416431

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
354908:354924	attL	NA	NA	NA	NA
WP_001043675.1\|364138_365191_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.7e-112	58.5
WP_001285275.1\|365473_366577_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	6.9e-61	39.8
WP_000893231.1\|366588_367839_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.6e-98	47.5
WP_010835868.1\|368044_369208_-\|integrase	site-specific integrase	A0A192Y6Q1	Salmonella_phage	3.7e-230	100.0
WP_016048814.1\|369437_369788_-	hypothetical protein	A0A192Y649	Salmonella_phage	8.3e-61	100.0
WP_016048815.1\|369858_370527_-	DUF551 domain-containing protein	A0A192Y7X3	Salmonella_phage	2.5e-130	100.0
WP_010835870.1\|370530_370719_-	hypothetical protein	A0A192Y8X2	Salmonella_phage	4.6e-26	100.0
WP_010835871.1\|370841_371129_-	hypothetical protein	A0A192Y6Q6	Salmonella_phage	4.3e-47	100.0
WP_010835872.1\|371139_371433_-	DUF2856 family protein	A0A192Y654	Salmonella_phage	1.9e-50	100.0
WP_016048817.1\|371479_371764_-	sigma-70 family RNA polymerase sigma factor	A0A192Y7Y0	Salmonella_phage	4.0e-45	100.0
WP_010835873.1\|371763_372471_-	Recombination protein	A0A192Y8X7	Salmonella_phage	1.1e-139	100.0
WP_010835874.1\|373162_373528_-	hypothetical protein	A0A192Y658	Salmonella_phage	3.6e-59	100.0
WP_023890943.1\|373671_374250_+	superinfection exclusion protein B	A0A192Y7Z0	Salmonella_phage	8.8e-100	100.0
WP_016048819.1\|374270_374654_-	hypothetical protein	A0A192Y8Y8	Salmonella_phage	3.0e-64	100.0
WP_000834165.1\|374985_375189_+	hypothetical protein	A0A192Y6Q5	Salmonella_phage	9.1e-28	100.0
WP_001532928.1\|375227_376307_-	hypothetical protein	A0A192Y6S0	Salmonella_phage	1.5e-193	100.0
WP_001104735.1\|376440_377094_-	LexA family transcriptional regulator	C6ZR47	Salmonella_phage	4.6e-129	100.0
WP_001059982.1\|377203_377413_+	helix-turn-helix transcriptional regulator	I6S1U2	Salmonella_phage	2.1e-35	100.0
WP_000424138.1\|377546_377837_+	hypothetical protein	I6RSP4	Salmonella_phage	2.4e-45	100.0
WP_010835877.1\|378005_378827_+	replication protein	A0A192Y6S6	Salmonella_phage	5.2e-154	100.0
WP_016048822.1\|378823_380200_+	AAA family ATPase	A0A192Y673	Salmonella_phage	1.5e-254	100.0
WP_000248681.1\|380272_380479_+	hypothetical protein	A0A192Y802	Salmonella_phage	1.1e-31	100.0
WP_016048823.1\|380493_380691_+	hypothetical protein	A0A192Y900	Salmonella_phage	3.4e-27	100.0
WP_023890942.1\|380951_381215_+	hypothetical protein	A0A192Y6R5	Salmonella_phage	8.2e-45	100.0
WP_016048826.1\|381439_381877_+	recombination protein NinB	A0A192Y6T2	Salmonella_phage	1.3e-79	100.0
WP_023890941.1\|381873_382047_+	hypothetical protein	C6ZR56	Salmonella_phage	2.0e-31	98.2
WP_016048827.1\|382013_382190_+	NinE family protein	A0A1V0E5I9	Salmonella_phage	4.6e-28	100.0
WP_016048828.1\|382192_382534_+	DUF2591 family protein	A0A192Y677	Salmonella_phage	1.2e-64	100.0
WP_010835878.1\|382526_382703_+	protein ninF	A0A192Y808	Salmonella_phage	6.7e-27	100.0
WP_010835879.1\|382695_382965_+	hypothetical protein	A0A192Y905	Salmonella_phage	1.6e-43	100.0
WP_000002244.1\|382964_383255_+	DUF1364 domain-containing protein	A0A192Y6R9	Salmonella_phage	1.0e-51	100.0
WP_016048829.1\|383251_383647_+	RusA family crossover junction endodeoxyribonuclease	A0A192Y6T7	Salmonella_phage	3.1e-72	100.0
WP_001287665.1\|383643_384213_+	HNH endonuclease	A0A192Y683	Salmonella_phage	1.1e-107	100.0
WP_000149880.1\|384209_384413_+	protein ninH	A0A1V0E5I5	Salmonella_phage	5.5e-33	100.0
WP_016048830.1\|384393_384573_+	hypothetical protein	A0A192Y814	Salmonella_phage	7.1e-24	100.0
WP_000027541.1\|384569_385088_+	DUF1133 family protein	A0A192Y911	Salmonella_phage	9.0e-96	100.0
WP_000286100.1\|385551_385755_+	hypothetical protein	I6R0S9	Salmonella_phage	1.1e-33	100.0
WP_023890940.1\|385732_386230_+	lysozyme	A0A192Y6U3	Salmonella_phage	3.8e-91	100.0
WP_010835883.1\|386226_386694_+\|lysis	lysis protein	A0A192Y689	Salmonella_phage	1.0e-77	100.0
WP_016048832.1\|386906_387593_+	Rha family transcriptional regulator	A0A192Y918	Salmonella_phage	1.6e-124	100.0
WP_000808100.1\|387903_388146_+	DUF2560 family protein	A0A192Y6S9	Salmonella_phage	1.0e-33	100.0
WP_016048833.1\|388148_388553_+	hypothetical protein	A0A192Y6U9	Salmonella_phage	4.0e-67	100.0
WP_000729925.1\|388556_389045_+	hypothetical protein	O80290	Bacteriophage	2.9e-88	100.0
WP_010835897.1\|389022_390522_+\|terminase	terminase large subunit	I1TEI5	Salmonella_phage	8.2e-307	100.0
WP_010835896.1\|390522_392697_+\|portal	portal protein	I1TEI6	Salmonella_phage	0.0e+00	100.0
WP_000433852.1\|392710_393622_+	scaffold protein	A0A192Y6T4	Salmonella_phage	4.9e-161	100.0
WP_010835895.1\|393621_394914_+	protein Coat	I1TEI8	Salmonella_phage	4.2e-243	100.0
WP_010835894.1\|394952_395162_+	hypothetical protein	I1TEI9	Salmonella_phage	2.8e-32	100.0
WP_010835893.1\|395145_395646_+	Packaged DNA stabilization protein gp4	I1TEJ0	Salmonella_phage	3.2e-90	100.0
WP_010835892.1\|395605_397024_+	Tail accessory protein	I1TEJ1	Salmonella_phage	6.4e-277	100.0
WP_016048834.1\|397027_397729_+	hypothetical protein	I1TEJ2	Salmonella_phage	9.4e-72	100.0
WP_016048835.1\|397728_398184_+	DUF2824 family protein	I1TEJ3	Salmonella_phage	1.8e-87	100.0
WP_006819472.1\|398186_398876_+	hypothetical protein	I1TEJ4	Salmonella_phage	3.9e-94	100.0
WP_016048836.1\|398918_400256_+	phage DNA ejection protein	I1TEJ5	Salmonella_phage	1.4e-244	100.0
WP_016048837.1\|400255_402187_+	hypothetical protein	I1TEJ6	Salmonella_phage	0.0e+00	100.0
WP_071533035.1\|402325_402619_+	hypothetical protein	Q76H12	Enterobacteria_phage	3.2e-50	100.0
WP_000532177.1\|402639_402888_-	Arc family DNA-binding protein	Q76H48	Enterobacteria_phage	1.8e-38	100.0
WP_016048838.1\|403023_405027_+\|tail	tailspike protein	I1TEJ8	Salmonella_phage	0.0e+00	100.0
WP_016048812.1\|405085_406543_-	O-antigen conversion translocase	I1TED7	Salmonella_phage	5.8e-241	100.0
WP_016048813.1\|406532_407465_-	glycosyltransferase family 2 protein	I1TED8	Salmonella_phage	5.5e-176	100.0
WP_000915523.1\|407461_407824_-	GtrA family protein	I1TED9	Salmonella_phage	3.9e-61	100.0
416415:416431	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1015801 : 1024533

Dickeya_phage(14.29%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001201751.1\|1015801_1016920_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9
WP_000125877.1\|1016916_1018863_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
WP_000447499.1\|1018992_1019214_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000520789.1\|1019537_1019858_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000934063.1\|1019888_1022165_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_000502119.1\|1022356_1022815_+\|transposase	IS200/IS605-like element IS200F family transposase	A0A1S5RHE3	Helicobacter_phage	5.1e-10	33.9
WP_085983316.1\|1023277_1024533_-\|transposase	IS3-like element ISSen1 family transposase	Q6H9S3	Enterobacteria_phage	5.4e-17	33.9

DBSCAN-SWA_4

1074617 : 1173423

101

Salmonella_phage(41.07%)

tRNA,lysis,protease,terminase,integrase,holin,tail,portal

attL 1077526:1077545|attR 1149311:1149330

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001154025.1\|1074617_1075421_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_001288828.1\|1075413_1076736_+	chromosome partition protein MukF	NA	NA	NA	NA
WP_000060025.1\|1076716_1077421_+	chromosome partition protein MukE	NA	NA	NA	NA
WP_000572724.1\|1077420_1081887_+	chromosome partition protein MukB	NA	NA	NA	NA
1077526:1077545	attL	NA	NA	NA	NA
WP_000925872.1\|1082231_1084073_+	L,D-transpeptidase	NA	NA	NA	NA
WP_000357052.1\|1084332_1084881_+	YcbK family protein	A0A0K1LKR7	Rhodobacter_phage	1.2e-05	33.7
WP_001109471.1\|1084908_1085556_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_000462653.1\|1085617_1086808_-	aspartate transaminase	NA	NA	NA	NA
WP_000977713.1\|1086992_1088084_-	porin OmpF	Q1MVN1	Enterobacteria_phage	2.2e-99	51.7
WP_000117870.1\|1088690_1090091_-\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	4.5e-81	35.1
WP_000762342.1\|1090291_1090753_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_000544849.1\|1091069_1092284_+	diaminopropionate ammonia-lyase	NA	NA	NA	NA
WP_000893207.1\|1092528_1093965_+	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_000191399.1\|1094042_1095245_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_001262306.1\|1095439_1096732_-\|integrase	site-specific integrase	S4TSP2	Salmonella_phage	1.0e-252	99.8
WP_000065276.1\|1096776_1097025_-	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001237031.1\|1097065_1097305_-	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_161976234.1\|1097347_1098457_-	recombinase RecT	H6WRX0	Salmonella_phage	1.4e-173	87.2
WP_001668146.1\|1101477_1101777_-	hypothetical protein	S4TSN6	Salmonella_phage	8.1e-49	84.5
WP_000917564.1\|1101798_1101957_-	hypothetical protein	H6WRX3	Salmonella_phage	1.2e-22	98.1
WP_077905303.1\|1101949_1102210_-	hypothetical protein	NA	NA	NA	NA
WP_001038966.1\|1102259_1102670_-	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	8.1e-07	42.4
WP_000370145.1\|1102789_1103029_+	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	8.3e-12	47.2
WP_001574095.1\|1102994_1103369_+	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
WP_000062941.1\|1103453_1104437_+	hypothetical protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
WP_000800010.1\|1104439_1105189_+	ATP-binding protein	S4TNF5	Salmonella_phage	3.6e-138	99.6
WP_000113629.1\|1105199_1105547_+	DUF977 family protein	H6WRX9	Salmonella_phage	5.4e-52	89.6
WP_000065108.1\|1105543_1105855_+	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	7.2e-32	97.2
WP_014343823.1\|1105932_1106223_+	hypothetical protein	NA	NA	NA	NA
WP_001217665.1\|1106514_1106748_+	DinI family protein	H6WRY5	Salmonella_phage	2.1e-36	98.7
WP_000807548.1\|1106859_1107081_+	hypothetical protein	NA	NA	NA	NA
WP_000929805.1\|1107163_1107766_+	DUF1367 family protein	S4TTI0	Salmonella_phage	8.3e-109	98.5
WP_001096552.1\|1107974_1108586_+	hypothetical protein	A0A0M4RU10	Salmonella_phage	6.9e-79	91.6
WP_001617856.1\|1108582_1108729_+	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
WP_001047631.1\|1108718_1109516_+	antitermination protein	A0A0M4S661	Salmonella_phage	2.3e-151	99.6
WP_010989004.1\|1109582_1109900_+	hypothetical protein	NA	NA	NA	NA
WP_001534733.1\|1110073_1110199_+	hypothetical protein	NA	NA	NA	NA
WP_000798705.1\|1110334_1110784_-	hypothetical protein	NA	NA	NA	NA
WP_001141973.1\|1111144_1111831_-\|protease	type III secretion system effector protease GtgA	Q9MBM0	Phage_Gifsy-2	2.1e-132	100.0
WP_001574216.1\|1112106_1112436_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
WP_000984586.1\|1112419_1112872_+	lysozyme	A0A0M4R365	Salmonella_phage	2.3e-79	97.3
WP_001541990.1\|1112889_1113369_+\|lysis	lysis protein	Q56118	Enterobacteria_phage	1.4e-55	77.0
WP_000371784.1\|1113576_1114110_+	DUF1441 family protein	A0A291AWV8	Escherichia_phage	1.0e-33	48.1
WP_000989241.1\|1114066_1116205_+\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	3.4e-290	72.6
WP_000196190.1\|1116201_1116408_+	hypothetical protein	A0A1W6JT66	Pseudomonas_phage	2.9e-05	53.3
WP_077679777.1\|1116434_1117952_+\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	1.5e-175	65.1
WP_010989008.1\|1117875_1119957_+\|protease	Clp protease ClpP	A0A291AWT6	Escherichia_phage	4.8e-265	69.5
WP_001107908.1\|1120047_1120371_+	DUF2190 family protein	K7PLV6	Enterobacteria_phage	7.7e-29	61.3
WP_000774239.1\|1120363_1120663_+	ATP-binding protein	K7PH43	Enterobacteria_phage	4.5e-15	45.1
WP_000453194.1\|1120643_1121210_+\|tail	phage tail protein	Q9G063	Phage_Gifsy-2	9.5e-14	97.8
WP_000196702.1\|1121206_1121608_+\|tail	tail protein	K7PHM6	Enterobacterial_phage	1.5e-42	60.9
WP_000132756.1\|1121619_1122369_+\|tail	tail protein	A0A291AWU6	Escherichia_phage	3.7e-90	68.6
WP_000478859.1\|1122414_1122813_+\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	8.6e-30	56.8
WP_010989009.1\|1122809_1123139_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	5.0e-23	50.9
WP_077905305.1\|1123218_1126206_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	4.8e-266	62.1
WP_000978296.1\|1126202_1126535_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	3.3e-35	61.5
WP_000725267.1\|1126633_1127131_+	outer membrane beta-barrel protein	A0A1B0VBR9	Salmonella_phage	1.4e-16	36.6
WP_000877926.1\|1127247_1127781_-	superoxide dismutase [Cu-Zn]	Q9MC02	Salmonella_phage	1.8e-46	54.0
WP_001152415.1\|1127870_1128566_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.3e-89	66.7
WP_000606351.1\|1128575_1129313_+\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.6e-114	76.1
WP_000246065.1\|1129210_1129915_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.2e-67	62.6
WP_001541992.1\|1129986_1132434_+	host specificity protein J	Q687E8	Enterobacteria_phage	0.0e+00	68.0
WP_031615525.1\|1132412_1133336_+	DUF1983 domain-containing protein	K7PKJ2	Enterobacteria_phage	5.6e-56	76.9
WP_000178849.1\|1133374_1133617_+	hypothetical protein	NA	NA	NA	NA
WP_001144679.1\|1133670_1136109_+\|tail	tail protein	A0A0K2FIZ6	Escherichia_phage	2.9e-91	63.4
WP_000143167.1\|1136108_1136690_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
WP_001533476.1\|1137165_1138134_+	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	7.9e-194	99.7
WP_000334547.1\|1138781_1139408_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
WP_010989011.1\|1139476_1139776_-	hypothetical protein	NA	NA	NA	NA
WP_001525490.1\|1139760_1140447_-	hypothetical protein	NA	NA	NA	NA
WP_000497441.1\|1140717_1140909_-	DinI-like family protein	S4TNM0	Salmonella_phage	6.2e-26	95.2
WP_000193784.1\|1141335_1143948_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.6
WP_000291723.1\|1144155_1145166_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_001220671.1\|1145331_1145874_+	cell division protein ZapC	NA	NA	NA	NA
WP_000224069.1\|1145870_1146980_-	MOSC domain-containing protein	NA	NA	NA	NA
WP_001086485.1\|1147078_1149187_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_000053044.1\|1149199_1151107_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
1149311:1149330	attR	NA	NA	NA	NA
WP_000333152.1\|1151121_1152375_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000433414.1\|1152379_1154020_+	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000759136.1\|1154016_1154580_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_001537784.1\|1154835_1155003_+	ribosome modulation factor	NA	NA	NA	NA
WP_000227928.1\|1155102_1155621_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_000156454.1\|1155689_1157450_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000877172.1\|1157635_1158088_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_001674965.1\|1158159_1159212_-	porin OmpA	NA	NA	NA	NA
WP_000288732.1\|1159568_1160078_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_001202375.1\|1160294_1160900_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_000950880.1\|1160886_1163040_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001261222.1\|1163058_1163505_-	YccF domain-containing protein	NA	NA	NA	NA
WP_000420505.1\|1163628_1165683_+	DNA helicase IV	A7KV33	Bacillus_phage	8.5e-20	27.6
WP_000424187.1\|1165718_1166177_-	methylglyoxal synthase	NA	NA	NA	NA
WP_000847719.1\|1166271_1166934_-	DUF2057 family protein	NA	NA	NA	NA
WP_001537782.1\|1167107_1167521_+	CoA-binding protein	NA	NA	NA	NA
WP_000561983.1\|1167565_1167883_-	heat shock protein HspQ	NA	NA	NA	NA
WP_000140480.1\|1167940_1169152_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000859419.1\|1169366_1169915_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_000548082.1\|1169940_1170720_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000072884.1\|1170768_1171050_+	acylphosphatase	NA	NA	NA	NA
WP_000904446.1\|1171046_1171376_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_000374050.1\|1171462_1172122_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.3e-43	51.9
WP_000938191.1\|1172742_1173423_-\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	8.3e-81	70.6

DBSCAN-SWA_5

1962099 : 1968908

Salmonella_phage(33.33%)

integrase,tail

attL 1956962:1956984|attR 1966677:1966699

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1956962:1956984	attL	NA	NA	NA	NA
WP_000275418.1\|1962099_1962981_-\|tail	tail assembly protein	A0A0M4RTP2	Salmonella_phage	2.2e-65	76.0
WP_001521334.1\|1963453_1963642_+	hypothetical protein	NA	NA	NA	NA
WP_000789530.1\|1963706_1963874_+	lytic enzyme	NA	NA	NA	NA
WP_001050882.1\|1964130_1964664_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	1.4e-11	48.3
WP_001013467.1\|1964717_1964948_-	hypothetical protein	Q8HA86	Salmonella_phage	6.1e-28	93.7
WP_010989030.1\|1965137_1965632_+	hypothetical protein	A0A0U2I1R6	Escherichia_phage	8.2e-22	68.9
WP_001520095.1\|1965691_1966546_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.6e-73	50.9
WP_000722368.1\|1966919_1967273_-	YebY family protein	NA	NA	NA	NA
1966677:1966699	attR	NA	NA	NA	NA
WP_000979702.1\|1967289_1968165_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_000168393.1\|1968165_1968540_-	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_000856224.1\|1968677_1968908_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3

DBSCAN-SWA_6

2044358 : 2123017

103

Salmonella_phage(81.16%)

capsid,plate,head,protease,terminase,integrase,portal,holin,tail,transposase

attL 2050896:2050911|attR 2124640:2124655

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138645089.1\|2044358_2044817_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	3.7e-08	31.3
WP_000659236.1\|2044997_2046203_-	lysine-N-methylase	NA	NA	NA	NA
WP_000079806.1\|2046281_2047769_-	flagellin FliC	NA	NA	NA	NA
WP_000146802.1\|2048025_2049429_+	flagellar filament capping protein FliD	NA	NA	NA	NA
WP_000287764.1\|2049443_2049851_+	flagellar export chaperone FliS	NA	NA	NA	NA
WP_000204899.1\|2049850_2050219_+	flagella biosynthesis regulatory protein FliT	NA	NA	NA	NA
WP_000795487.1\|2050290_2051775_+	alpha-amylase	NA	NA	NA	NA
2050896:2050911	attL	NA	NA	NA	NA
WP_000754695.1\|2051814_2052240_-	lipoprotein	NA	NA	NA	NA
WP_000790504.1\|2053626_2053860_+	sulfurtransferase-like selenium metabolism protein YedF	NA	NA	NA	NA
WP_000639596.1\|2054124_2054511_+	hypothetical protein	NA	NA	NA	NA
WP_000719036.1\|2054630_2054945_-	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA
WP_001276834.1\|2055161_2056844_+	flagellar basal body M-ring protein FliF	NA	NA	NA	NA
WP_000067735.1\|2056836_2057832_+	flagellar motor switch protein FliG	NA	NA	NA	NA
WP_000064163.1\|2057824_2058532_+	flagellar assembly protein FliH	NA	NA	NA	NA
WP_138020332.1\|2058531_2059902_+	flagellum-specific ATP synthase FliI	NA	NA	NA	NA
WP_000046981.1\|2059923_2060367_+	flagella biosynthesis chaperone FliJ	NA	NA	NA	NA
WP_000631669.1\|2060363_2061581_+	flagellar hook length control protein FliK	NA	NA	NA	NA
WP_000132169.1\|2061685_2062153_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA
WP_000502811.1\|2062157_2063162_+	flagellar motor switch protein FliM	NA	NA	NA	NA
WP_001282115.1\|2063158_2063572_+	flagellar motor switch protein FliN	NA	NA	NA	NA
WP_000978276.1\|2063571_2063949_+	flagellar type III secretion system protein FliO	NA	NA	NA	NA
WP_001253410.1\|2063948_2064686_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA
WP_000187355.1\|2064695_2064965_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA
WP_000616953.1\|2064973_2065768_+	flagellar type III secretion system protein FliR	NA	NA	NA	NA
WP_000103974.1\|2066049_2066673_+	transcriptional regulator RcsA	NA	NA	NA	NA
WP_071524019.1\|2066711_2066960_-	protein DsrB	NA	NA	NA	NA
WP_000844798.1\|2067034_2067262_+	YodD family peroxide/acid resistance protein	NA	NA	NA	NA
WP_000948794.1\|2067571_2068387_+	mannosyl-3-phosphoglycerate phosphatase-related protein	NA	NA	NA	NA
WP_001119821.1\|2068365_2070078_-	cellulose biosynthesis regulator YedQ	A0A127AWB9	Bacillus_phage	1.2e-19	37.4
WP_001178599.1\|2070242_2070488_-	YodC family protein	NA	NA	NA	NA
WP_000929134.1\|2070504_2071416_-	DUF808 domain-containing protein	NA	NA	NA	NA
WP_001212264.1\|2071591_2072512_+	drug/metabolite exporter YedA	NA	NA	NA	NA
WP_000785978.1\|2072500_2072971_-	very short patch repair endonuclease	E5E3X5	Burkholderia_phage	1.2e-30	46.9
WP_001157322.1\|2072951_2074382_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4
WP_000377041.1\|2074455_2075151_-	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
WP_000107430.1\|2075242_2075542_-	membrane protein	NA	NA	NA	NA
WP_001080680.1\|2076191_2077388_+	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.8e-110	56.1
WP_024131109.1\|2077648_2077837_-	hypothetical protein	NA	NA	NA	NA
WP_000208509.1\|2077847_2078060_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_000457662.1\|2078514_2079783_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	4.2e-227	92.2
WP_000394196.1\|2079785_2080205_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_000500831.1\|2080331_2080493_-	hypothetical protein	NA	NA	NA	NA
WP_001093793.1\|2081686_2081899_+	hypothetical protein	A0A192Y5V6	Salmonella_phage	2.7e-30	100.0
WP_000842532.1\|2081895_2082309_+	hypothetical protein	A0A192Y6F0	Salmonella_phage	2.9e-73	100.0
WP_122815478.1\|2082356_2082470_+	hypothetical protein	A0A1C9IHU6	Salmonella_phage	4.3e-11	100.0
WP_000836773.1\|2082544_2082778_+	hypothetical protein	A0A192Y6D5	Salmonella_phage	1.2e-36	100.0
WP_022742744.1\|2082891_2083497_-\|tail	tail fiber assembly protein	A0A192Y8L2	Salmonella_phage	2.7e-107	100.0
WP_020899405.1\|2083466_2085029_-	hypothetical protein	A0A192Y7M1	Salmonella_phage	1.0e-288	100.0
WP_001207832.1\|2085015_2085603_-	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	2.9e-114	100.0
WP_000785578.1\|2085605_2086685_-\|plate	baseplate J/gp47 family protein	A0A192Y6E4	Salmonella_phage	2.9e-205	100.0
WP_000605051.1\|2086677_2087091_-	hypothetical protein	A0A192Y6D0	Salmonella_phage	3.1e-75	100.0
WP_001273648.1\|2087095_2087629_-\|plate	phage baseplate assembly protein	A0A192Y8K5	Salmonella_phage	8.4e-97	100.0
WP_001066630.1\|2087628_2088687_-\|plate	baseplate protein	A0A192Y7L7	Salmonella_phage	1.3e-202	100.0
WP_000863827.1\|2088683_2090024_-	DNA circularization protein	A0A192Y5U9	Salmonella_phage	5.2e-252	100.0
WP_000785390.1\|2090057_2091986_-\|tail	phage tail tape measure protein	A0A192Y6D8	Salmonella_phage	0.0e+00	100.0
WP_022742746.1\|2092070_2092364_-	hypothetical protein	A0A192Y6C5	Salmonella_phage	2.6e-47	100.0
WP_000515952.1\|2092393_2092750_-\|tail	tail protein	A0A192Y8K0	Salmonella_phage	2.6e-62	100.0
WP_001007996.1\|2092749_2094246_-\|tail	tail sheath protein	A0A192Y7L1	Salmonella_phage	2.1e-278	100.0
WP_000497740.1\|2094235_2094400_-	DUF2635 domain-containing protein	A0A1C9II04	Salmonella_phage	1.3e-24	100.0
WP_000779216.1\|2094403_2094964_-	hypothetical protein	A0A192Y5U4	Salmonella_phage	8.0e-106	100.0
WP_001135699.1\|2094960_2095473_-	hypothetical protein	A0A192Y6D2	Salmonella_phage	3.5e-92	100.0
WP_000702410.1\|2095444_2095849_-\|head	phage head closure protein	A0A192Y6C2	Salmonella_phage	3.2e-72	100.0
WP_000927378.1\|2095845_2096169_-\|head,tail	phage gp6-like head-tail connector protein	A0A192Y8J4	Salmonella_phage	6.3e-55	100.0
WP_000601352.1\|2096171_2096372_-	hypothetical protein	A0A192Y7K5	Salmonella_phage	1.8e-28	100.0
WP_000257526.1\|2096422_2097628_-\|capsid	phage major capsid protein	A0A192Y5T6	Salmonella_phage	7.0e-224	100.0
WP_001193639.1\|2097642_2098293_-\|head,protease	HK97 family phage prohead protease	Q8HAD3	Salmonella_phage	1.5e-119	100.0
WP_020899404.1\|2098270_2099512_-\|portal	phage portal protein	Q8HAD4	Salmonella_phage	2.9e-241	99.3
WP_000605609.1\|2099511_2099694_-	hypothetical protein	Q8HAD5	Salmonella_phage	1.0e-25	100.0
WP_000088175.1\|2099705_2101439_-\|terminase	terminase large subunit	U5P0Q5	Shigella_phage	0.0e+00	98.3
WP_000929171.1\|2101435_2101930_-\|terminase	phage terminase small subunit P27 family	A0A1B3B2F4	Salmonella_phage	1.7e-88	100.0
WP_001135098.1\|2102055_2102406_-	HNH endonuclease	M1FQV2	Enterobacteria_phage	9.8e-62	94.8
WP_001379492.1\|2102456_2102789_-	hypothetical protein	A0A192Y5Y1	Salmonella_phage	2.8e-58	100.0
WP_001530346.1\|2103251_2103644_-	DUF2570 domain-containing protein	A0A192Y6H8	Salmonella_phage	2.8e-65	100.0
WP_001624504.1\|2103640_2104255_-	glycoside hydrolase family 19 protein	A0A192Y6G4	Salmonella_phage	5.7e-113	100.0
WP_000422366.1\|2104254_2104536_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	9.7e-20	45.2
WP_001283169.1\|2104522_2104909_-	membrane protein	A0A192Y8P2	Salmonella_phage	7.0e-61	100.0
WP_001624505.1\|2105054_2105312_-	hypothetical protein	A0A1C9IHX4	Salmonella_phage	3.1e-41	100.0
WP_020899401.1\|2105462_2106215_-	antitermination protein	A0A192Y5X6	Salmonella_phage	1.8e-145	100.0
WP_020899400.1\|2106228_2107218_-	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	4.0e-193	99.1
WP_020899399.1\|2107225_2108086_-	KilA-N domain-containing protein	Q8HA92	Salmonella_phage	8.4e-163	99.7
WP_001241579.1\|2108102_2108492_-	RusA family crossover junction endodeoxyribonuclease	Q8HA93	Salmonella_phage	3.7e-70	100.0
WP_000066908.1\|2108488_2109382_-	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	7.6e-175	100.0
WP_001684745.1\|2109381_2109864_-	PerC family transcriptional regulator	Q8HA95	Salmonella_phage	1.1e-87	100.0
WP_000061500.1\|2109865_2110684_-	helix-turn-helix domain-containing protein	Q8HA96	Salmonella_phage	2.8e-136	100.0
WP_000620702.1\|2110680_2110905_-	hypothetical protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
WP_001087402.1\|2110901_2112059_-	peptidase	Q8HA97	Salmonella_phage	4.2e-218	100.0
WP_000509731.1\|2112055_2112610_-	hypothetical protein	A0A1C9II13	Salmonella_phage	6.9e-102	100.0
WP_001191666.1\|2112638_2112863_-	helix-turn-helix transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
WP_001020636.1\|2112960_2113656_+	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	3.2e-128	100.0
WP_001067432.1\|2113861_2114200_+	hypothetical protein	A0A1C9IHZ4	Salmonella_phage	7.0e-57	100.0
WP_023891434.1\|2114162_2114387_-	hypothetical protein	A0A1C9IHY8	Salmonella_phage	1.6e-33	100.0
WP_000997191.1\|2114926_2115298_+	hypothetical protein	A0A192Y6G0	Salmonella_phage	2.5e-63	100.0
WP_000080416.1\|2115355_2116183_+	YfdQ family protein	A0A192Y6E5	Salmonella_phage	2.6e-153	100.0
WP_000008351.1\|2116319_2116859_+	hypothetical protein	A0A192Y8M4	Salmonella_phage	2.6e-98	100.0
WP_000215886.1\|2116929_2117463_+	hypothetical protein	A0A192Y7N1	Salmonella_phage	2.5e-101	100.0
WP_000224241.1\|2117464_2117722_+	hypothetical protein	A0A192Y5W0	Salmonella_phage	1.3e-42	100.0
WP_020899398.1\|2117732_2118314_+	hypothetical protein	A0A192Y6F5	Salmonella_phage	4.7e-109	100.0
WP_001061334.1\|2118317_2118887_+	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	7.1e-110	100.0
WP_000414876.1\|2118911_2119154_+	DUF4224 domain-containing protein	Q8HAA9	Salmonella_phage	9.5e-40	100.0
WP_000532847.1\|2119155_2120145_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	8.6e-196	100.0
WP_000598920.1\|2120436_2121234_+	DgsA anti-repressor MtfA	NA	NA	NA	NA
WP_024159751.1\|2121605_2121896_+	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.0e-08	50.9
WP_001219015.1\|2122543_2123017_+	peptidase	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	7.1e-39	77.6
2124640:2124655	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2268548 : 2340534

Cronobacter_phage(54.05%)

tRNA,capsid,head,terminase,integrase,holin,tail,portal

attL 2270060:2270081|attR 2300067:2300088

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001517981.1\|2268548_2269910_+\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	2.3e-207	95.4
2270060:2270081	attL	NA	NA	NA	NA
WP_033574042.1\|2270191_2271514_-	FRG domain-containing protein	NA	NA	NA	NA
WP_058815650.1\|2272574_2274275_-	hypothetical protein	F1BUJ7	Cronobacter_phage	5.4e-222	80.9
WP_000200789.1\|2274277_2274823_-	hypothetical protein	F1BUJ9	Cronobacter_phage	3.2e-59	72.0
WP_000267956.1\|2274794_2275520_-	hypothetical protein	F1BUK1	Cronobacter_phage	6.6e-68	56.4
WP_058815646.1\|2275509_2276064_-\|tail	tail fiber assembly protein	S4TUB9	Salmonella_phage	1.2e-90	89.5
WP_138020336.1\|2276076_2278182_-\|tail	phage tail protein	S4TP62	Salmonella_phage	2.6e-197	68.8
WP_001001828.1\|2278191_2278779_-	hypothetical protein	F1BUK5	Cronobacter_phage	3.8e-90	82.6
WP_000136921.1\|2278771_2279956_-	hypothetical protein	F1BUK6	Cronobacter_phage	6.7e-179	78.4
WP_023210885.1\|2279952_2280282_-	DUF2590 family protein	F1BUK8	Cronobacter_phage	2.2e-39	73.3
WP_023210886.1\|2280278_2282246_-\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	8.3e-267	69.6
WP_000411500.1\|2282433_2282691_-	hypothetical protein	A5X9I7	Aeromonas_virus	2.3e-20	61.0
WP_000376378.1\|2282837_2283170_-	hypothetical protein	F1BUL2	Cronobacter_phage	4.4e-35	70.0
WP_000175558.1\|2283169_2283511_-	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	2.2e-50	91.1
WP_001154426.1\|2283507_2283804_-\|holin	holin	C7BGD7	Burkholderia_phage	2.4e-16	48.2
WP_000166745.1\|2283816_2284272_-	DUF2597 family protein	F1BUL4	Cronobacter_phage	1.7e-58	71.5
WP_033574048.1\|2284268_2285396_-	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	1.8e-173	82.9
WP_033574049.1\|2285392_2286097_-	phage protein	F1BUL6	Cronobacter_phage	8.9e-70	59.1
WP_033574050.1\|2286093_2286576_-\|tail	phage tail protein	F1BUL7	Cronobacter_phage	3.0e-37	48.7
WP_077917291.1\|2286572_2287025_-\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	8.0e-48	63.3
WP_000505908.1\|2287118_2287310_-	hypothetical protein	NA	NA	NA	NA
WP_033574052.1\|2287328_2288027_-\|terminase	terminase	F1BUM0	Cronobacter_phage	2.3e-62	53.0
WP_033574053.1\|2288037_2289057_-\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	5.5e-137	73.5
WP_033574054.1\|2289091_2289910_-\|capsid	phage capsid scaffolding protein	F1BUM4	Cronobacter_phage	1.4e-45	52.0
WP_033574055.1\|2290053_2291838_+\|terminase	terminase	F1BUM5	Cronobacter_phage	1.9e-249	70.4
WP_033574056.1\|2291834_2292854_+\|portal	phage portal protein	F1BUM7	Cronobacter_phage	7.9e-136	69.1
WP_033574057.1\|2292853_2293183_+	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	1.5e-27	58.2
WP_033574064.1\|2293228_2294200_-	hypothetical protein	NA	NA	NA	NA
WP_033574058.1\|2294334_2296989_-	toprim domain-containing protein	A0A077K8T2	Ralstonia_phage	2.1e-241	46.8
WP_033574059.1\|2297249_2297819_-	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	1.8e-44	48.4
WP_033574060.1\|2297828_2298164_-	hypothetical protein	NA	NA	NA	NA
WP_033574061.1\|2298160_2298436_-	hypothetical protein	Q1JS60	Enterobacteria_phage	5.2e-42	82.4
WP_033574062.1\|2298553_2298853_+	helix-turn-helix transcriptional regulator	Q1JS63	Enterobacteria_phage	3.9e-43	86.9
WP_033574063.1\|2298968_2299982_+\|integrase	tyrosine-type recombinase/integrase	Q83VS6	Escherichia_phage	3.2e-177	89.3
WP_010989041.1\|2300367_2301414_+	type III secretion system effector arginine glycosyltransferase	Q8HAB2	Salmonella_phage	1.6e-147	75.2
2300067:2300088	attR	NA	NA	NA	NA
WP_001669236.1\|2301449_2301866_-	CesT family type III secretion system chaperone	NA	NA	NA	NA
WP_001542166.1\|2301987_2302323_-	membrane protein	NA	NA	NA	NA
WP_001273389.1\|2302884_2303784_+	lipid kinase YegS	NA	NA	NA	NA
WP_000129590.1\|2303836_2304889_-	class I fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_000858692.1\|2305142_2306414_+	MFS transporter	NA	NA	NA	NA
WP_000642793.1\|2306410_2307415_+	ADP-ribosylglycohydrolase family protein	NA	NA	NA	NA
WP_001012658.1\|2307411_2308377_+	sugar kinase	NA	NA	NA	NA
WP_000434062.1\|2308350_2309097_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_001188957.1\|2309132_2309933_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_001182156.1\|2309919_2310717_-	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_000837534.1\|2311126_2311441_+	Ni(II)/Co(II) efflux transporter accessory subunit RcnB	NA	NA	NA	NA
WP_000765279.1\|2311703_2312711_-	putative fimbrial-like adhesin protein	NA	NA	NA	NA
WP_000945364.1\|2312726_2315216_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_000698773.1\|2315229_2315913_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_000830686.1\|2315968_2316499_-	fimbrial protein YehD	NA	NA	NA	NA
WP_000760404.1\|2316777_2317059_-	YehE family protein	NA	NA	NA	NA
WP_001005424.1\|2317336_2318446_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_000195332.1\|2318610_2320644_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6
WP_000703137.1\|2320884_2321343_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_001197952.1\|2321514_2322045_+	YehR family lipoprotein	NA	NA	NA	NA
WP_000950413.1\|2322101_2322569_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_000598637.1\|2322615_2323335_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000272845.1\|2323331_2325017_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.2e-279	91.1
WP_001240418.1\|2325239_2325971_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_001261696.1\|2326030_2326138_+	protein YohO	NA	NA	NA	NA
WP_000824855.1\|2326118_2326850_-	ABC transporter permease	NA	NA	NA	NA
WP_000569166.1\|2326833_2327781_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2
WP_001278110.1\|2327773_2328943_-	ABC transporter permease	NA	NA	NA	NA
WP_000155869.1\|2328946_2329864_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000871560.1\|2330044_2332342_-	beta-glucosidase BglX	NA	NA	NA	NA
WP_000095232.1\|2332608_2334339_+	D-lactate dehydrogenase	NA	NA	NA	NA
WP_000911555.1\|2334396_2335344_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_001017057.1\|2335509_2336097_-	YIP1 family protein	NA	NA	NA	NA
WP_000930540.1\|2336228_2336825_+	DedA family protein	NA	NA	NA	NA
WP_000169608.1\|2336873_2337635_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_001081453.1\|2337700_2339137_-	multidrug resistance outer membrane protein MdtQ	NA	NA	NA	NA
WP_000698460.1\|2339454_2339538_+	protein YohP	NA	NA	NA	NA
WP_001264832.1\|2339595_2340534_-\|tRNA	tRNA dihydrouridine(16) synthase DusC	NA	NA	NA	NA

DBSCAN-SWA_8

2399833 : 2410139

Salmonella_phage(44.44%)

holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000806401.1\|2399833_2400337_-	LexA family transcriptional regulator	Q1MVE7	Enterobacteria_phage	9.5e-50	71.3
WP_000884778.1\|2400364_2400655_+	DinI family protein	S4TND2	Salmonella_phage	4.7e-25	83.3
WP_138020337.1\|2401703_2402249_-\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	3.2e-11	31.3
WP_000554739.1\|2402251_2403493_-	hypothetical protein	Q8HAB4	Salmonella_phage	1.0e-52	95.3
WP_001120499.1\|2404085_2404415_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	3.9e-36	94.6
WP_000894640.1\|2404711_2406043_+	AAA family ATPase	R9TRQ8	Vibrio_phage	2.1e-19	28.5
WP_010989045.1\|2406071_2406440_-	antitermination protein Q	A5LH77	Enterobacteria_phage	7.4e-52	81.7
WP_001202279.1\|2406454_2407444_-	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	6.0e-189	97.3
WP_001115840.1\|2407772_2410139_-	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	Q9MBL9	Phage_Gifsy-2	2.9e-72	88.7

DBSCAN-SWA_9

2751156 : 2854127

108

Salmonella_phage(34.43%)

tRNA,capsid,lysis,head,protease,terminase,integrase,portal,holin,tail,transposase

attL 2778012:2778027|attR 2849216:2849231

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000940032.1\|2751156_2751888_-\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA
WP_000553467.1\|2752006_2752810_+	inositol-1-monophosphatase	NA	NA	NA	NA
WP_000174944.1\|2752954_2753833_+	alpha/beta hydrolase	A0A1C9C5K3	Heterosigma_akashiwo_virus	3.5e-15	24.7
WP_000985204.1\|2754014_2755058_+	anaerobic sulfite reductase subunit A	NA	NA	NA	NA
WP_000017587.1\|2755061_2755880_+	anaerobic sulfite reductase subunit B	NA	NA	NA	NA
WP_000020685.1\|2755890_2756904_+	sulfite reductase subunit C	NA	NA	NA	NA
WP_000111027.1\|2756904_2757891_-	nickel/cobalt transporter	NA	NA	NA	NA
WP_000805728.1\|2757881_2758520_-	DUF1007 family protein	NA	NA	NA	NA
WP_000982961.1\|2758645_2759923_+	stationary phase inducible protein CsiE	NA	NA	NA	NA
WP_001173729.1\|2759917_2761057_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA
WP_000919178.1\|2761252_2762506_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.3e-100	53.0
WP_000883146.1\|2762830_2764021_+	NO-inducible flavohemoprotein	NA	NA	NA	NA
WP_001187150.1\|2764202_2765747_+	CadC family transcriptional regulator	NA	NA	NA	NA
WP_000100008.1\|2766107_2767439_+	cadaverine/lysine antiporter	NA	NA	NA	NA
WP_001100652.1\|2767521_2769666_+	lysine decarboxylase CadA	NA	NA	NA	NA
WP_000856793.1\|2769721_2771182_+	MFS transporter	A0A0P0IY73	Acinetobacter_phage	1.7e-46	28.8
WP_000717694.1\|2771230_2771569_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
WP_000625591.1\|2771645_2772983_-	two-component system response regulator GlrR	W8CYM9	Bacillus_phage	1.8e-10	29.2
WP_001054236.1\|2772979_2773744_-	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA
WP_001670672.1\|2773745_2775176_-	two component system sensor histidine kinase QseE/GlrK	W8CYF6	Bacillus_phage	2.0e-15	26.1
WP_000502119.1\|2775891_2776350_-\|transposase	IS200/IS605-like element IS200F family transposase	A0A1S5RHE3	Helicobacter_phage	5.1e-10	33.9
WP_000970045.1\|2776537_2780425_-	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	1.4e-127	57.6
2778012:2778027	attL	NA	NA	NA	NA
WP_001747289.1\|2780446_2780680_+	hypothetical protein	NA	NA	NA	NA
WP_000734248.1\|2780680_2782225_+	membrane-bound lytic murein transglycosylase MltF	NA	NA	NA	NA
WP_001134566.1\|2782275_2782827_-\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
WP_000253558.1\|2782851_2783487_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA
WP_000361663.1\|2783490_2784852_-	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_001048530.1\|2784862_2785756_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_000995703.1\|2785871_2786720_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_000684022.1\|2786758_2787676_-	oxidoreductase	NA	NA	NA	NA
WP_001276365.1\|2787697_2788894_-	OFA family MFS transporter	NA	NA	NA	NA
WP_001022463.1\|2789009_2789936_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	3.0e-09	24.4
WP_001196290.1\|2789973_2790234_+	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	1.4e-17	52.3
WP_000986043.1\|2790345_2790726_-	holo-ACP synthase	NA	NA	NA	NA
WP_000818972.1\|2790725_2791457_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_000399380.1\|2791468_2792197_-	DNA repair protein RecO	NA	NA	NA	NA
WP_000102232.1\|2792208_2793114_-	GTPase Era	NA	NA	NA	NA
WP_001068341.1\|2793110_2793791_-	ribonuclease III	A0A2K9L5P0	Tupanvirus	7.4e-21	31.8
WP_000002559.1\|2794064_2795039_-	signal peptidase I	NA	NA	NA	NA
WP_000790154.1\|2795055_2796855_-	elongation factor 4	E4ZFJ7	Streptococcus_phage	7.2e-23	24.9
WP_138020340.1\|2797259_2798723_+	type III secretion effector GogB	Q9MBM1	Phage_Gifsy-1	2.9e-248	100.0
WP_001542312.1\|2800026_2800164_+	hypothetical protein	NA	NA	NA	NA
WP_015589559.1\|2800876_2801041_-\|transposase	transposase	NA	NA	NA	NA
WP_015701342.1\|2801620_2801686_-	DUF4113 domain-containing protein	NA	NA	NA	NA
WP_001738443.1\|2801748_2801961_-	helix-turn-helix domain-containing protein	S4TTF2	Salmonella_phage	3.8e-08	90.6
WP_010989049.1\|2802067_2802295_+	PagK-like protein	NA	NA	NA	NA
WP_000143154.1\|2802391_2802970_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.6e-93	88.9
WP_000593433.1\|2802959_2803784_-\|tail	tail protein	A0A0M4QWS3	Salmonella_phage	1.2e-145	92.0
WP_001144691.1\|2803780_2806153_-\|tail	tail protein	A0A0K2FIZ6	Escherichia_phage	1.1e-90	65.6
WP_000178853.1\|2806206_2806449_-	hypothetical protein	NA	NA	NA	NA
WP_000514917.1\|2806487_2809850_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	79.7
WP_000246126.1\|2809911_2810559_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.1e-89	77.7
WP_000662739.1\|2810456_2811194_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.2e-129	85.0
WP_001152689.1\|2811200_2811899_-\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	5.5e-104	76.3
WP_000447369.1\|2811908_2812238_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.3e-42	70.4
WP_000372072.1\|2812240_2815336_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	6.1e-280	62.3
WP_010989052.1\|2815307_2815646_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
WP_000479607.1\|2815642_2816038_-\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
WP_000971954.1\|2816088_2816835_-\|tail	tail protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
WP_000033885.1\|2816842_2817244_-\|tail	tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
WP_000817263.1\|2817352_2818483_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q9G0F2	Phage_Gifsy-1	9.2e-218	100.0
WP_000677089.1\|2818531_2819110_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
WP_000083294.1\|2819137_2819521_-\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	9.2e-29	55.6
WP_000201486.1\|2819531_2819891_-	DNA packaging protein	NA	NA	NA	NA
WP_000522566.1\|2819948_2820977_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
WP_000011260.1\|2821031_2821379_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
WP_001189503.1\|2821391_2822888_-	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	8.1e-97	52.2
WP_000831821.1\|2822877_2824458_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	9.6e-189	62.8
WP_000201415.1\|2824454_2824658_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	1.9e-17	73.8
WP_000623091.1\|2824641_2826573_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	6.3e-259	65.7
WP_001102153.1\|2826544_2827090_-\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
WP_000669690.1\|2827376_2827778_+	hypothetical protein	NA	NA	NA	NA
WP_001533543.1\|2828013_2828466_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	2.9e-66	92.7
WP_000984581.1\|2828483_2828936_-	lysozyme	A0A0M4R365	Salmonella_phage	5.1e-79	97.3
WP_001574216.1\|2828919_2829249_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
WP_001110783.1\|2829524_2830211_+\|protease	type III secretion system effector protease GogA	Q9MBM2	Phage_Gifsy-1	9.4e-133	100.0
WP_000657897.1\|2830425_2830614_-	hypothetical protein	NA	NA	NA	NA
WP_000211410.1\|2831120_2831684_-	ORF6N domain-containing protein	A0A0P0ZC44	Stx2-converting_phage	7.6e-56	92.2
WP_001097241.1\|2831956_2832634_-	antitermination protein	I6PDF8	Cronobacter_phage	7.7e-63	54.0
WP_000801757.1\|2832630_2832771_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
WP_001096550.1\|2832767_2833379_-	recombination protein NinG	A0A0M4RU10	Salmonella_phage	1.2e-91	99.0
WP_000929791.1\|2833587_2834190_-	DUF1367 family protein	S4TTI0	Salmonella_phage	2.8e-109	99.0
WP_014343878.1\|2834224_2834473_-	hypothetical protein	A0A0U2C0C8	Salmonella_phage	1.6e-42	100.0
WP_001217669.1\|2834589_2834823_-	DinI family protein	H6WRY5	Salmonella_phage	5.6e-37	100.0
WP_000877757.1\|2835065_2835698_-	hypothetical protein	NA	NA	NA	NA
WP_000664368.1\|2835805_2836504_-	DUF550 domain-containing protein	A0A0M4RTV1	Salmonella_phage	2.1e-63	85.7
WP_000801764.1\|2836517_2837213_-	hypothetical protein	G8C7U6	Escherichia_phage	2.1e-55	45.4
WP_000024044.1\|2837209_2838094_-	replication protein	K7PGT1	Enterobacteria_phage	1.3e-46	47.2
WP_010835408.1\|2838185_2838560_-	hypothetical protein	S4TTD7	Salmonella_phage	1.9e-63	98.4
WP_000643689.1\|2838519_2838762_-	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	2.1e-23	64.1
WP_000660736.1\|2838861_2839257_+	helix-turn-helix domain-containing protein	K7PM35	Enterobacteria_phage	1.9e-37	61.4
WP_001111772.1\|2839315_2840155_+	AAA family ATPase	A0A1X9IGI7	Lactococcus_phage	1.5e-31	33.3
WP_000356948.1\|2840147_2840534_+	hypothetical protein	NA	NA	NA	NA
WP_000950426.1\|2840533_2841196_+	hypothetical protein	NA	NA	NA	NA
WP_000917562.1\|2841652_2841811_+	hypothetical protein	H6WRX3	Salmonella_phage	9.0e-23	98.1
WP_001539619.1\|2841832_2842183_+	hypothetical protein	S4TSN6	Salmonella_phage	1.1e-60	97.4
WP_000017125.1\|2842309_2845237_+	exodeoxyribonuclease	S4TNL0	Salmonella_phage	0.0e+00	99.3
WP_077248255.1\|2845199_2846357_+	recombinase RecT	S4TTE8	Salmonella_phage	3.9e-216	99.5
WP_001237031.1\|2846399_2846639_+	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_001670787.1\|2846679_2846964_+	excisionase Xis	H6WRW8	Salmonella_phage	3.1e-42	86.2
WP_001007939.1\|2846941_2848171_-\|integrase	site-specific integrase	H6WRW7	Salmonella_phage	2.9e-233	94.4
WP_000589087.1\|2848668_2849148_-	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_000812017.1\|2849144_2850101_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
2849216:2849231	attR	NA	NA	NA	NA
WP_001168374.1\|2850100_2850751_-	anti-sigma-E factor RseA	NA	NA	NA	NA
WP_000003307.1\|2850782_2851358_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
WP_014344135.1\|2851354_2851519_-	rpoE leader peptide RseD	NA	NA	NA	NA
WP_000989191.1\|2851782_2853405_+	L-aspartate oxidase	NA	NA	NA	NA
WP_000083343.1\|2853389_2854127_-\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA

DBSCAN-SWA_10

2971355 : 2977943

Escherichia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000633913.1\|2971355_2972000_-	AAA family ATPase	A0A222YXS3	Escherichia_phage	1.9e-39	43.0
WP_001103697.1\|2972228_2973200_+	hypothetical protein	A0A222YXF2	Escherichia_phage	1.3e-66	42.9
WP_000340829.1\|2973204_2973597_+	hypothetical protein	NA	NA	NA	NA
WP_000457496.1\|2973601_2974873_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	1.4e-142	60.5
WP_000109071.1\|2974872_2975310_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.3e-26	48.4
WP_000618110.1\|2975306_2975555_-	DinI-like family protein	A0A1W6JP10	Morganella_phage	2.3e-12	38.8
WP_001302618.1\|2975972_2976875_+	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_032155763.1\|2976878_2977184_+	hypothetical protein	NA	NA	NA	NA
WP_000086160.1\|2977259_2977943_+	DNA methylase	A0A2K9VH43	Faecalibacterium_phage	2.6e-26	36.0

DBSCAN-SWA_11

4466297 : 4486717

Burkholderia_phage(45.0%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000587738.1\|4466297_4467026_-	hypothetical protein	A0A077SLK3	Escherichia_phage	5.6e-35	37.3
WP_010989092.1\|4467222_4467513_-	membrane protein	NA	NA	NA	NA
WP_000084331.1\|4467761_4468217_-	hypothetical protein	NA	NA	NA	NA
WP_001526208.1\|4468213_4468819_-	DUF4376 domain-containing protein	NA	NA	NA	NA
WP_000368196.1\|4468823_4470569_-\|tail	tail protein	A0A0M3ULF6	Salmonella_phage	3.2e-52	52.2
WP_000359500.1\|4470571_4471204_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	6.6e-24	56.4
WP_000951736.1\|4471196_4472312_-\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.8e-101	52.2
WP_001093501.1\|4472302_4472662_-\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
WP_001095011.1\|4472825_4474373_-	membrane protein	B9UDL6	Salmonella_phage	1.9e-48	29.9
WP_000703632.1\|4474372_4475302_-	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	8.8e-150	83.8
WP_000593182.1\|4475298_4475661_-	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
WP_000679398.1\|4475988_4476711_-\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.3e-11	41.0
WP_000818154.1\|4476720_4477764_-	phage late control D family protein	Q6QIA2	Burkholderia_phage	2.5e-76	45.1
WP_001269716.1\|4477751_4477961_-	membrane protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
WP_000271423.1\|4477960_4478914_-	methyl-accepting chemotaxis protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
WP_001262499.1\|4478913_4481268_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	9.0e-66	30.6
WP_001185654.1\|4481364_4481493_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_001003642.1\|4481452_4481770_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000907494.1\|4481821_4482346_-\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
WP_000729852.1\|4482345_4483773_-\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.1e-194	70.9
WP_000875314.1\|4483762_4483960_-	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
WP_000449433.1\|4483956_4484412_-	hypothetical protein	NA	NA	NA	NA
WP_033566939.1\|4484571_4484886_-	membrane protein	Q6QIC4	Burkholderia_phage	3.2e-19	48.2
WP_001270441.1\|4484898_4485504_-	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-60	59.9
WP_001226442.1\|4485506_4485794_-	membrane protein	Q6QIC8	Burkholderia_phage	2.3e-16	49.1
WP_000615248.1\|4486369_4486717_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040648

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection