CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040635	Acidipropionibacterium jensenii strain FAM 19038 chromosome, complete genome	10 crisprs	cas3,csa3,DEDDh,WYL,DinG	0	4	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040635_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040635_1

157189-157305

Orphan

Consensus_repeat	Method
CCGGGGGTTGCCAGGGGGTCGTCCCCCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040635_1

>merge|NZ_CP040635|1|157189-157305|CRISPRCasFinder
CCGGGGGTTGCCAGGGGGTCGTCCCCCGGACCCTCACCCCATCCAACGGGCCAGCGCGGCGGACCCCAGCCACCCACCGAGCCCCCGCCCGGGGGTTGCCAGGGGGGTCGTCCCCCG

>NZ_CP040635|1|1|157189-157305|CRISPRCasFinder
CCGGGGGTTGCCAGGGGGTCGTCCCCCGG	ACCCTCACCCCATCCAACGGGCCAGCGCGGCGGACCCCAGCCACCCACCGAGCCCCCGC
CCGGGGGTTGCCAGGGGGGTCGTCCCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040635.1\|WP_138679659.1\|139995_140850_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_CP040635.1\|WP_138679664.1\|155643_157179_+\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|238520
NZ_CP040635.1\|WP_138679660.1\|140977_142696_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224048
NZ_CP040635.1\|WP_084149286.1\|163784_164489_+\|methyltransferase	unknown	unknown	gnl\|CDD\|226607
NZ_CP040635.1\|WP_097799140.1\|147509_148604_+\|magnesium-and-cobalt-transport-protein-CorA	unknown	unknown	gnl\|CDD\|213364
NZ_CP040635.1\|WP_028702756.1\|158371_158878_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040635.1\|WP_097799150.1\|162855_163737_-\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
NZ_CP040635.1\|WP_138679661.1\|146638_147343_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|378373
NZ_CP040635.1\|WP_138679665.1\|159076_160351_+\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225148
NZ_CP040635.1\|WP_097799143.1\|151770_153153_+\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP040635.1\|WP_138679668.1\|165313_166540_-\|glucose-1-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234846
NZ_CP040635.1\|WP_138679663.1\|150659_151400_-\|nucleic-acid-binding-protein	unknown	unknown	gnl\|CDD\|224495
NZ_CP040635.1\|WP_097799144.1\|153272_154022_+\|carbon-nitrogen-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|143587
NZ_CP040635.1\|WP_097799149.1\|162367_162793_-\|Sec-independent-protein-translocase-subunit-TatB	unknown	unknown	gnl\|CDD\|179287
NZ_CP040635.1\|WP_138680801.1\|157311_158142_-\|cytochrome-C-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|224528
NZ_CP040635.1\|WP_097799145.1\|154083_155415_-\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|235685
NZ_CP040635.1\|WP_138679666.1\|161062_162223_+\|Mrp/NBP35-family-ATP-binding-protein	unknown	unknown	gnl\|CDD\|378455
NZ_CP040635.1\|WP_097799897.1\|160385_160934_+\|DUF1003-domain-containing-protein	unknown	unknown	gnl\|CDD\|377629
NZ_CP040635.1\|WP_138679667.1\|164560_165160_+\|vitamin-K-epoxide-reductase-family-protein	unknown	unknown	gnl\|CDD\|240605
NZ_CP040635.1\|WP_138679662.1\|148535_149828_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040635.1\|WP_138679665.1\|159076_160351_+\|CBS-domain-containing-protein	gnl\|CDD\|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	7.95115e-38
NZ_CP040635.1\|WP_138679664.1\|155643_157179_+\|aminopeptidase-P-family-protein	gnl\|CDD\|238520	cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.	6.97263e-99
NZ_CP040635.1\|WP_138679660.1\|140977_142696_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	0
NZ_CP040635.1\|WP_084149286.1\|163784_164489_+\|methyltransferase	gnl\|CDD\|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	3.48547e-37
NZ_CP040635.1\|WP_097799140.1\|147509_148604_+\|magnesium-and-cobalt-transport-protein-CorA	gnl\|CDD\|213364	cd12830, MtCorA-like, Mycobacterium tuberculosis CorA-like subfamily. This bacterial subfamily belongs to the Thermotoga maritima CorA (TmCorA)-like family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subfamily includes the Mg2+ transporter Mycobacterium tuberculosis CorA (which also transports Co2+). Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	4.69916e-119
NZ_CP040635.1\|WP_097799150.1\|162855_163737_-\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	2.67251e-135
NZ_CP040635.1\|WP_138679661.1\|146638_147343_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|378373	pfam10060, DUF2298, Uncharacterized membrane protein (DUF2298). This domain, found in various hypothetical bacterial proteins, has no known function.	0.00714126
NZ_CP040635.1\|WP_138679659.1\|139995_140850_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	5.33923e-130
NZ_CP040635.1\|WP_097799143.1\|151770_153153_+\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	2.04697e-40
NZ_CP040635.1\|WP_138679663.1\|150659_151400_-\|nucleic-acid-binding-protein	gnl\|CDD\|224495	COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only].	1.69546e-16
NZ_CP040635.1\|WP_097799144.1\|153272_154022_+\|carbon-nitrogen-hydrolase-family-protein	gnl\|CDD\|143587	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and co-enzyme metabolism, in detoxifying small molecules, in the synthesis of signaling molecules, and in the post-translational modification of proteins. They are used industrially, as biocatalysts in the fine chemical and pharmaceutical industry, in cyanide remediation, and in the treatment of toxic effluent. This superfamily has been classified previously in the literature, based on global and structure-based sequence analysis, into thirteen different enzyme classes (referred to as 1-13). This hierarchy includes those thirteen classes and a few additional subfamilies. A putative distant relative, the plasmid-borne TraB family, has not been included in the hierarchy.	2.27335e-49
NZ_CP040635.1\|WP_097799149.1\|162367_162793_-\|Sec-independent-protein-translocase-subunit-TatB	gnl\|CDD\|179287	PRK01371, PRK01371, Sec-independent protein translocase protein TatB.	5.27445e-41
NZ_CP040635.1\|WP_138680801.1\|157311_158142_-\|cytochrome-C-oxidase-subunit-I	gnl\|CDD\|224528	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones].	8.31617e-07
NZ_CP040635.1\|WP_097799145.1\|154083_155415_-\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|235685	PRK06058, PRK06058, 4-aminobutyrate--2-oxoglutarate transaminase.	0
NZ_CP040635.1\|WP_138679666.1\|161062_162223_+\|Mrp/NBP35-family-ATP-binding-protein	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	2.07639e-124
NZ_CP040635.1\|WP_097799897.1\|160385_160934_+\|DUF1003-domain-containing-protein	gnl\|CDD\|377629	pfam06210, DUF1003, Protein of unknown function (DUF1003). This family consists of several hypothetical bacterial proteins of unknown function.	1.00604e-46
NZ_CP040635.1\|WP_138679667.1\|164560_165160_+\|vitamin-K-epoxide-reductase-family-protein	gnl\|CDD\|240605	cd12922, VKOR_5, Vitamin K epoxide reductase family in bacteria. This family includes vitamin K epoxide reductase (VKOR) mostly present in actinobacteria. VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade.	5.59251e-52
NZ_CP040635.1\|WP_138679668.1\|165313_166540_-\|glucose-1-phosphate-adenylyltransferase	gnl\|CDD\|234846	PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional.	0

>NZ_CP040635.1|WP_138679664.1|155643_157179_+|aminopeptidase-P-family-protein
MTEVQSTTNSSSTGDRHTEEDAAAQLAVAEEQKLPKRQTPFSQAFVDFIPTGWAPYDTAPEQQLDSVPSATAHRDALAARFPGERLVIPAGTLVRRNNDCDYPFRPNSAFAYYTGLGTDREPNAVLVVDGSAESRDVLYFKPRAPRTDREFYADPTYGEMWVGKRESLAEMSAMTGLECRDISRLQEAVSASDPQVRVIRDADPGITETVDSLRSTGSEEADQEFYEATSAARFCKDEWEIGQLRQACRKSKVGFEAMIEQIPAAVANGRGERWLEGTFNLHARHLGNNVGYGSICAAGDNANTLHWMRNDGDLRPGELVLIDAGIEVDSLYTADITRTLPVSGRFSPAQRKVYQAVLEAQDAAAAVARVGHDHREIHQAAIRVICEYLAEWGILPVSVDEALSPEGGQFRRWMVHGTSHHLGLDVHDCSEAARKDYSGPLKAGMTVSDEPGIYFKKSDLLVPEEFRGIGIRIEDDILITDGDCEWLSKDTPRQIDEVEDWMAEIWGRSTK
>NZ_CP040635.1|WP_097799145.1|154083_155415_-|4-aminobutyrate--2-oxoglutarate-transaminase
MADPIYHLAQERRLVTALPGPRSKELAARRDAVVAKGVSSSSPFYVAQADGGVLVDADGNSVIDLGAGIAVTSVGASAPHVVHNVQEAVANFTHSSFATTPYEGYVAVCEQLAELTPGTFAKKTVLVNSGAEAVENAIKIARHATGRAAVAVAENAFHGRTNLTMALTTKAMPYKVGFGPFAPEIYHFPSSNPFREPEPITGEQAAQRAIDYLETTVGADHLACLLQEPIQGEGGFIVPAEGYLPTLQAWCHEHGIVFILDEIQCGFCRSGKWFACEYEGVEPDLITTAKALGGGLPLAAVTGRAEIMDSAQAGGLGGTYGGNPISCAASLGAIETMKEWDLPARARAIESAIRSKVGPLVGSGSVGDVRGRGAMMAVEFVKPGTKEPDAARAGQVASELLHEGVIVLTCGIYGNCVRFLPSLVIPADLLDEALDLFVAAASR
>NZ_CP040635.1|WP_097799144.1|153272_154022_+|carbon-nitrogen-hydrolase-family-protein
MLVWPELHLFADGVPDRAREARLRAAAQPLDGPLIAGLAAISRRLGVWLIPGSVCERGPEGALFNTSVVLSPDGDLTASYRKIFPWRPTEPYTPGDRLCVFDIAGVGRLGLCICFDSWFPEISRNLAWLGAETIINPVKTTTPDRPQEMVIARANAITQQVNFLTVNVAGPVGVGVSALFGPEGERISGIDDDRPGSFEAVLSSDRVHRTRREGTAGVTRPWDFFRPGDSPVDLPAYRGTIDPASWNRI
>NZ_CP040635.1|WP_097799143.1|151770_153153_+|APC-family-permease
MSATPTTRSVVGGTGPTGQAHSSHDLRPQLRLHSVLAFGLAYLAPIIVLGTFGVISDKSHGGTAGSYLIALVAMLLTAASYGRLSREIPMAGSAYTYVRRMVSNHLGFLVGWGSLLDYVFIPMVIWLIGASYLNAAFPAVPDWTWILIFIVSTTTLNILGIKVADKANLVLLAIEILVIALFTVFAVYAVLHHGRSLISLTPFTGTPFNVLALSAGAATAAYSFLGFDAVTTLTEETVDARRTIPKAIMLTALVGGGIFVVSTYFTELVHPLVAVVDIDSAAFEIAKSIGGAFLSAVFLTGLIVGQFASGIAAQASASRLMFAMGRDGVLPKRFFGVVSKRTGTPRNAILVVAVVGLIGCLLDVSTSTSFINFGAFIAFGMVNVAAIALSRKHASEAHGPGRLVGYVLPALGVLVVFYLLTQLDTPALVVGGSWLVIGIGVLTWLTRGFHRPPPEMGDAA
>NZ_CP040635.1|WP_138679663.1|150659_151400_-|nucleic-acid-binding-protein
MKAAPQEQWRLLDVAETDRLLAQTAHRRKTLPELAELSQLAVQRRDLAEEVVRLATEVSDAQEEEAQVEHDLQPARARLERNQKTVDDGLLSDHKALVGLTDEIEHLKRRISDLEDTELEAMQRLEDAQKVHEEADRRRLTLDDHIRGVLKSRDDHFAEIDRQLKQLTEQRRAQAAGIPADLLKLYETLRTRTGQGAGRLHRGVCESCGITINAADLRRFASAGEDEVLRCEECDRILVRTADSGL
>NZ_CP040635.1|WP_138679662.1|148535_149828_-|hypothetical-protein
MLYMVFLAVCIVVCIWWGGPGARRRSRLDWTQVPGVTRRRGGVVVPIGGLSWAPIPSELADTRRFELVGSSTRSFGGSPVVVLARGQRIGILEGAAARKINAELRRRRLARLLVEGELTGRHEGRVVLPYDFSPATLELPAGPARAFPVPVPVEAWGSATTTVDAVRCDFFLTELSALYPDGRPPSGTSGGTLSGLGAEIFPTGQGRIGVFIDDRQIGWLAAAHEISHRQELEDLAAGGHSLRVKVSVRVGTGDRPSVRVRIWLPEVDQILPPGAQIEDPHVLLPPGSTVQVTGEEEHLDELVAMLGDEHEVIKVAELYLFTRQTARTLKQIVGVRIDGRPVGELTSVSGAHFEAVLRACSERGLRALCRATISGNQLKTDVTLNVTKGGSLTSQWISRHILARPGVDSHPVLALEDHPQQDSGGEHQSQ
>NZ_CP040635.1|WP_097799140.1|147509_148604_+|magnesium-and-cobalt-transport-protein-CorA
MRSPVQNRDRSHRLIDLIGRHDKPTTAEEPEASTVKVVRLRHGEVHGTETAGPDASGGVVEDALAYANGDPERLVVLDYDCPSPQQIRHLARAWHLHPVLVEDLLKAGQRPKMERYPEVLFVVARMATYVDEIEDVQVTEYHLVTHHNVVAILRQDGHNPATDRAERLSQNVELMKLGADAVLYSFLDLVVDGYLQVLRELGVDREQIERQVFAGDPKVTERIYRLSREIIDLQQSCVPLAEVIQDLRAGFAKYRTLDSLRAYLQDVSDHLSRVNTRVEDLRSGMGQILDVNSILVTQQQNEDMKKISGWAAIGLAPTVIGAIYGMNFDVMPELHWALGYPFSLALMLTAGVLLWVIFKRKHWM
>NZ_CP040635.1|WP_138679661.1|146638_147343_-|rhomboid-family-intramembrane-serine-protease
MMGSLVAVSSWVLVVAVLLAASTASTAARRPGGPWERPRPSTAALWLVVVVPSLVQLVVPALLPALERDWARIGSGQLWRLVTSVVVQDGGPLGLVFNLFRLTLVLVAAQRYWSAGRVWITFWVGAVLSNLAVGPVLEPVGGGNSMAVFALGSALVSNLLLSRPDRRALLWAGVAIACMALMAAGRDYHAVSCAIGLAAGLVPPHGPHPQNPDPQGPHQGSHRGSQGSREGLED
>NZ_CP040635.1|WP_138679660.1|140977_142696_-|ABC-transporter-ATP-binding-protein
MVAGQQAGASGESDFDQPVLRLRDLSVHFGGSAVAASEGIDLDLTPGRVLALVGESGSGKSVTALGSLGLLPTTAQVSGSALLSRPGDKGGGASEVELVGAARPVLDDARGRLVGTIFQEPASALDPLLTIRAQISEAIRAHGDRHEISRSRLRERVGELLTRVGLPEVERIAASYPHQLSGGQQQRACIALALACDPPVIVADEPTTALDITVQAGILDLLRTLTRDGMAVLLITHDMGVVADIADEVAVMRCGHIVERGGVDEIFSRPSHPYTRELLGAVPRLDALREAPERRESEQTGRQPSAVVEVTDLDVVYRARGRRPVHAVRGVSLTIAPGEVLGLVGESGSGKSTIAGTLTGMVPVTSGSVRVDGVEVAGASRRALLPVRRQTGVVYQNPASALNPRRTVGASIAEPLMLHAEMESAQRRARVRELLEQVRLPVSMAERYPHEMSGGQRQRVAIARALALRPRLVIADEPTSALDVSVQAVVLDLLASLQAELEFACLFVSHDLAVVEQVAARTLVLSAGKVVEEGPTDQVLAHPREEYTRRLVAAVPVPDPRVQRSRRAARIA
>NZ_CP040635.1|WP_138679659.1|139995_140850_+|type-I-methionyl-aminopeptidase
MTAIKPYPVSPRLDVPASIPRPPYVGLGDVDEDYQGSHVQTPEVIEAMKEAGRIACGAMHEAGKAVAPGVTTDALDRIAHEYMCDHGAYPSSLDYRNYPKSICTSVNEVICHGIPDARPLEDGDIVKIDVTAYKNGVHGDNCYTFLCGDVDQASRDLVTHTQESMNRAIKAVRPGRSISIIGRIIENYAKRFGYGVVHDYTGHGVHTAFHSGLIVFHYDEPRYDVTLEEGMTLTIEPMLTLGDYHSHQWDDGWTVITNDGSRCAQFEQTMVIRADGAEILTTLG
>NZ_CP040635.1|WP_138680801.1|157311_158142_-|cytochrome-C-oxidase-subunit-I
MQVLFALTAVLITITLALGSTVCATDASASCPNWPGCYVGKLTPSAHTQPVVEFIHRVISSSIGLFAVASVLAGVAHRRRNHALVVLPVIALLGALTSGVFGMMTIKWGINSVEASLDLLAALIAMGAMWRAWFVTRHPAAGWTWRPRVRWGVAAVVTLMAAHVGAVLVAGSSSLTRCMGWALFVRGVGDAPLAGWAVQQAVMAVGELLTIGLVVMRLRHRVNLWDLLLAALVVVVLVVGVVIAAAGANDGLAVVHAVGTVLILNLVMTGTMRDAV
>NZ_CP040635.1|WP_028702756.1|158371_158878_-|hypothetical-protein
MAGQHVPASLLQLDYPQSVIVVDDYQTAQKIVDHLSDQEFPVENLCIVGTDLRTVERVTGRKTWGSVLGQGAVSGLGTGLLVGLMLAFFTGSSGNFLTMLITGLLIGVVIGIITAAIGYSMTGGRRDFDSVQQVVATHYEVLAEHKVAAKAREIVNAMPEFRARAFEG
>NZ_CP040635.1|WP_138679665.1|159076_160351_+|CBS-domain-containing-protein
MSRSSAVFISRLRGLPVLDAAGDQVGKVRDVVIQLRTQGRAPRVRGLVVELFARRKIFVPMPRVHAIDVNQVMIAGTVDTRVFSRREAETLVVDDLFDRTFTRDGSPVSIFDVAMRSVRTHDWEISQVAVTPAGGHNRFTSLRKQALSTIIVDWDEVPALVMMGRQSTERTVAEMQDMKPADVARELHDMSPRRRAEVAKALDDDQLADAIEELPEDEQVSLILILDPERAADILEEMDPDDAADLVQDLPDNLAERLLARMRPEDAEDVRNLLVYDDFTAGAMMTPEPVILGPDATVADALAKVRSEDITPALASMVFVCRPPLDTPSGRYLGVVHVQRLLREPPSTMVSLLLDTDLQPLATDTPVGAISRYFATYNLVVAPVVNSGRELVGAVTVDDLLDHLLPADWRGDQMDGQLAGVRRG
>NZ_CP040635.1|WP_097799897.1|160385_160934_+|DUF1003-domain-containing-protein
MRLDLPGPRTGRRMPRVQLDSETFGRFAESVARFMGTAKFIVYMTIIVIVWVTWNLVAIFRLRWDPYPFILLNLFFSTQASYSAPLILLAQNRQEDRDRMSMAEDRRVTVQSRSDMDFLAREVAAIRMQMGDLATRDYIRSEMRDELQDHLREELKAALADLDGNPEDEDSEQAASTPERHD
>NZ_CP040635.1|WP_138679666.1|161062_162223_+|Mrp/NBP35-family-ATP-binding-protein
MSTENPLVPLIREALASVVDPEIRRPITDLNMVDEITVDESGRAFVRVLLTVSGCPLKTELRESVTEAVQGIEGVSGVHVELGTMSDEQRDALKVQLRNGVPERVIPFAEPGNMTKIIAVASGKGGVGKSSVTVNLALALAARGRNVGLLDADIYGHSIPDMLGVGEARPTPLDDLLLPVPALGIKTISVGMLKPNRSDVIAWRGPILDRALTQLLADVHWGDLDYLLIDLPPGTGDIAMSLGQKLPNADVLVVTTPQPAASEVAERAGTMAGIMQQQVIGVVENMSWLETVCPHCGKSHRVTLFGEGGGRAAANALSKRLGTEVPLFGQIPLDQQVRVGGDDGDPIVLSHPESPAAQALTELAEGLDSRPRGLAGMHLGVTPVAN
>NZ_CP040635.1|WP_097799149.1|162367_162793_-|Sec-independent-protein-translocase-subunit-TatB
MSMMSPTELAVLILIGVVMFGPDKVPDMARKAARVFHFLKNIANSTRDQLREDLGPKYADLQITDLNPKTFVRKYVMDDFQDDINGIKADLEGVRNDLDSSINDFQTATADAPQSPSSANEPAARTVALGSVPVPFDSEAT
>NZ_CP040635.1|WP_097799150.1|162855_163737_-|4-hydroxy-tetrahydrodipicolinate-synthase
MSDPIFGRVLTAMVTPMSPDGEVDLDRAAELATRLVDVQGNDSLLVNGTTGESPTTTDEEKSALVRAVRQAVGDRAQVIAGVGTNDTRHTVALARQAERAGADGLLVVTPYYSKPSQDGLVGHFTTVADATDLPVMLYDIPGRTGTAIAPETFIRLAEHPRIVAVKDAKGKVVESAQVMAATDLSYYSGDDAITPALLSLGAVGVIGTSTHFTGRSMHQLVDHYLAGRREEGLAVYRQILPVLTGVFAAQGVVMVKAGLAHQGFGVGGVRAPLVPATRSQAETFAAVLDAAGL
>NZ_CP040635.1|WP_084149286.1|163784_164489_+|methyltransferase
MLSTTIVTRAAPATLGAVSEAIEFPTGPDRRSWEYADGFVAVSEPVEAAHEAAGEAGWTPVGNGTATFLTFLARSIDAHAVVEIGTDAGVTGLSLLEGMSEHGVLTSIDVEADRQDAARRCFQRAGFRSNRFRLISGVPLSVLPKLRDGAYDLVLVNGDRLEYVEYVSQALRLLRHGGIVVVNDALAGSAVADPDNEDDETLIIREALDFVADSEEFLPVLLPVGEGLLLAAKA
>NZ_CP040635.1|WP_138679667.1|164560_165160_+|vitamin-K-epoxide-reductase-family-protein
MSSNGVDNPEKWRRGTAIEMIVSGAIGLVASFVLSIEAWKLAKNPHAIFTCDVNSVLSCSTVALTWQARVLGFPNAFLGIMFEAVVLTISVATLAGVRFPRWFMLCVEGVYCIALLFAWWLFLQSYFVIRALCPWCLLITITTTLVWAGLTRINIHDGSIRVRDGVREFVNYNTDWWVTGLVILVILAMVAIELIPALI
>NZ_CP040635.1|WP_138679668.1|165313_166540_-|glucose-1-phosphate-adenylyltransferase
MAMTRPKVLSIVLAGGEGKRLMPLTMDRAKPAVPFGGTYRLIDFVLSNLANSDLTKTAVLTQYKSHSLDRHISIAWRMSTMLGNYVTPVPAQQRLGPRWFQGSADAIFQSLNLINDEDPDYVVVFGADNIYRMDVEQMLEAHIDSRMGCTVAGIRVPRKDASAFGIIDAGEDHKIKEFLEKPADPPGLPDSPDESFASMGNYIFSRDSLVQALYDDSNAPDARHDMGGDIIPRFVNAGDAQVYDFKDNQVPGATEKDADYWRDVGTIDAYHEAHMDLVSVEPEFNLYNTEWPIWTSQVQAPGAKFVMRGTCDDSLVSAGCIISGTDIYRTILGPRSRVERWARVDESILMNNVRIGANATVHRAILDKNVVVPDGAQVGVNHEHDRARGFTVSPAGVTVVGKGVTVPY

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Crispr_ID: NZ_CP040635_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040635_2

402427-402510

Orphan

Consensus_repeat	Method
CGAACTTGAGTCCCGGGGGTCGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040635_2

>merge|NZ_CP040635|2|402427-402510|CRISPRCasFinder
CGAACTTGAGTCCCGGGGGTCGCGACGGCTGAGGCCCGCCCCGCAGACCATGCCGCCCACGAACTTGAGTTCCGGGGGTCGCGA

>NZ_CP040635|2|2|402427-402510|CRISPRCasFinder
CGAACTTGAGTCCCGGGGGTCGCGA	CGGCTGAGGCCCGCCCCGCAGACCATGCCGCCCA
CGAACTTGAGTTCCGGGGGTCGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040635.1\|WP_028703145.1\|398515_399808_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270303
NZ_CP040635.1\|WP_138679762.1\|394131_395361_-\|glycine-C-acetyltransferase	unknown	unknown	gnl\|CDD\|235893
NZ_CP040635.1\|WP_028703146.1\|399832_402148_-\|ROK-family-protein	unknown	unknown	gnl\|CDD\|223745
NZ_CP040635.1\|WP_015069612.1\|397556_398516_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP040635.1\|WP_138679770.1\|412761_414237_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP040635.1\|WP_138679766.1\|405309_406845_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP040635.1\|WP_138679763.1\|395426_396464_-\|L-threonine-3-dehydrogenase	unknown	unknown	gnl\|CDD\|180054
NZ_CP040635.1\|WP_138679765.1\|404149_405154_+\|IS481-like-element-ISPfr15-family-transposase	unknown	unknown	gnl\|CDD\|372671
NZ_CP040635.1\|WP_138679767.1\|407028_408141_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
NZ_CP040635.1\|WP_138679764.1\|402596_404051_+\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|273233
NZ_CP040635.1\|WP_126412889.1\|396616_397456_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP040635.1\|WP_138680816.1\|411065_412352_+\|DUF4032-domain-containing-protein	unknown	unknown	gnl\|CDD\|379077
NZ_CP040635.1\|WP_138680815.1\|409603_410761_+\|O-succinylhomoserine-(thiol)-lyase	unknown	unknown	gnl\|CDD\|131135
NZ_CP040635.1\|WP_138679768.1\|408341_409241_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226406
NZ_CP040635.1\|WP_138679769.1\|412429_412723_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040635.1\|WP_028703153.1\|414373_415363_+\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl\|CDD\|223640
NZ_CP040635.1\|WP_138679761.1\|392810_393656_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP040635.1\|WP_138679760.1\|392226_392745_+\|O-acetyl-ADP-ribose-deacetylase	unknown	unknown	gnl\|CDD\|394878
NZ_CP040635.1\|WP_138679759.1\|391167_392109_+\|dihydropteroate-synthase	unknown	unknown	gnl\|CDD\|273657
NZ_CP040635.1\|WP_097799304.1\|393748_394135_-\|DUF488-family-protein	unknown	unknown	gnl\|CDD\|225730

Protein	Function_ID	Function_description	E-value
NZ_CP040635.1\|WP_028703145.1\|398515_399808_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.98868e-87
NZ_CP040635.1\|WP_138679762.1\|394131_395361_-\|glycine-C-acetyltransferase	gnl\|CDD\|235893	PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional.	0
NZ_CP040635.1\|WP_028703146.1\|399832_402148_-\|ROK-family-protein	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	3.94679e-40
NZ_CP040635.1\|WP_015069612.1\|397556_398516_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	9.41621e-73
NZ_CP040635.1\|WP_138679770.1\|412761_414237_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP040635.1\|WP_138679766.1\|405309_406845_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	9.89366e-74
NZ_CP040635.1\|WP_138679763.1\|395426_396464_-\|L-threonine-3-dehydrogenase	gnl\|CDD\|180054	PRK05396, tdh, L-threonine 3-dehydrogenase; Validated.	0
NZ_CP040635.1\|WP_138679765.1\|404149_405154_+\|IS481-like-element-ISPfr15-family-transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	1.89056e-20
NZ_CP040635.1\|WP_138679767.1\|407028_408141_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	0
NZ_CP040635.1\|WP_138679764.1\|402596_404051_+\|L-serine-ammonia-lyase	gnl\|CDD\|273233	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form. This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein. [Energy metabolism, Amino acids and amines, Energy metabolism, Glycolysis/gluconeogenesis].	0
NZ_CP040635.1\|WP_126412889.1\|396616_397456_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	4.07806e-90
NZ_CP040635.1\|WP_138680816.1\|411065_412352_+\|DUF4032-domain-containing-protein	gnl\|CDD\|379077	pfam13224, DUF4032, Domain of unknown function (DUF4032). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 170 amino acids in length. The family is found in association with pfam06293.	6.19478e-86
NZ_CP040635.1\|WP_138680815.1\|409603_410761_+\|O-succinylhomoserine-(thiol)-lyase	gnl\|CDD\|131135	TIGR02080, Cystathionine_gamma-synthase, O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. [Amino acid biosynthesis, Aspartate family].	5.26182e-165
NZ_CP040635.1\|WP_138679768.1\|408341_409241_-\|hypothetical-protein	gnl\|CDD\|226406	COG3889, COG3889, Predicted solute binding protein [General function prediction only].	0.000714086
NZ_CP040635.1\|WP_028703153.1\|414373_415363_+\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl\|CDD\|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	2.3135e-75
NZ_CP040635.1\|WP_138679761.1\|392810_393656_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.84828e-20
NZ_CP040635.1\|WP_138679760.1\|392226_392745_+\|O-acetyl-ADP-ribose-deacetylase	gnl\|CDD\|394878	cd02908, Macro_OAADPr_deacetylase, macrodomain, O-acetyl-ADP-ribose (OAADPr) family. Macrodomains are found in a variety of proteins with diverse cellular functions, as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Macrodomains can recognize ADP-ribose (ADPr) in both its free and protein-linked forms, in related ligands, such as O-acyl-ADP-ribose (OAADPr), and even in ligands unrelated to ADPr. This family includes eukaryotic macrodomain proteins such as human MacroD1 and MacroD2, and bacterial proteins such as Escherichia coli YmdB; these have been shown to be O-acetyl-ADP-ribose (OAADPr) deacetylases that efficiently catalyze the hydrolysis of OAADPr to produce ADP-ribose and free acetate. OAADPr is a sirtuin reaction product generated from the NAD+-dependent protein deacetylation reactions and has been implicated as a signaling molecule. By acting on mono-ADP-ribosylated substrates, OAADPr deacteylases may reverse cellular ADP-ribosylation.	1.1199e-72
NZ_CP040635.1\|WP_138679759.1\|391167_392109_+\|dihydropteroate-synthase	gnl\|CDD\|273657	TIGR01496, Dihydropteroate_synthase, dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by model TIGR00284. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	4.85936e-71
NZ_CP040635.1\|WP_097799304.1\|393748_394135_-\|DUF488-family-protein	gnl\|CDD\|225730	COG3189, COG3189, Uncharacterized conserved protein [Function unknown].	5.22807e-41

>NZ_CP040635.1|WP_028703146.1|399832_402148_-|ROK-family-protein
MVSSDQEAKRARADVVLAALRHTSPATVRDLVTKTGFSRPTVISLLGALESHGVVRQSQGGAGNAVGRPAASWEIEPAAGIIVAADVLVSSALVVVASIHGGILSARTVAIHSQQREARLAEVSEMIAEAAGRQAPGHGALRQIAISTTGVIDGDGVIQRSDLVPQWNGLPLAAEISSRLGVPVAVDNDINMAALGEFSARRQAGSIAPDADLLMVQMTRGFNTGLVLGGRVHHGRQWNAGEVSDILGQPLDKFDSPTDEWVESAAVAIGSMAAVIDPDLIVITGPTPASLLAIRRVVARLISNRPVGAPPLPAEVSGLGWAASVSGALAVALHTAAGTLLGIPDPRPVPFRNFDLVTAELEKGPHSTMTTTVPSQLRTDTLRVGVVGVGARASLALNSELEENNGAITAVAEPHHLARERVVSRLKKDPDEISISPDVDGLIKAGVDVAFVTSPDDTHADATCALLEAGIPVYLEKPLAITLDSATRVLTTAYETGTKLYVGHNMRHMNVVRSMRDLIRTGRIGEVKAIWCRHFVGNGGDYYFKDWHATREHGTGLLLQKAAHDIDVMHWFADSHTTDVVAMGGQTLYNQVSDRRDNTDDLMVDWFSHDNWPPLTQKGLNPVIDVEDLSMMLMRMESGVFASYEQCHYTPDYWRNYTVIGTEGRIENFGDGEGGLIRLWNHRTEYSAEGDEQFPILGDANGHGDADVLTVTEFIRFVRSGARTDTSPLGAWYAVAAGIQATDSLRHGSTPRQIPSLPGEIVTYFLNNQVK
>NZ_CP040635.1|WP_028703145.1|398515_399808_-|sugar-ABC-transporter-substrate-binding-protein
MKRRSFLTGAAALAAMAVAGCGSKESGSPSAAASIDANTSATLTLAYWDKNQTPTVQANIKSFNAKYPKIKIRTNLTAYADYWTKMKTQAQGGELPDVMWMNGPNIQLYASNNMLEPLDSITSQGVDWKNYPDALVTLYTYDGKHYGVPKDYDTIGVFYNKDLFKQAGVEEPKADWTWDDFHDKAKKISDWGKSKGIYGCATTINGDGQGTYYNTIAQAGGYVIKDGKSGYDDPKSIEGLQCWADWIKDGSVASAKIVTDTKPDVMFENGKSAMFWSGDWMASQLAADLKGKEDKFGVIDLPKKEKKGTIIHGLAWAVSQKSKNKAAAIALAAHMSSKEAHEVEAKNGTAIPAFNDTQDAWVKAFPKLNMQLFIDAANDYAVTYPVSKNTDVWANKEADILVPAFDGSTTVKAAAKQMADFMNAELAKEK
>NZ_CP040635.1|WP_015069612.1|397556_398516_-|sugar-ABC-transporter-permease
MSEAGARGATAPRPGSASPKGRRRRGSPTSVGAWPVAFIGLLMLGVAVFYYWPIVKNIITSFQQTNAFGGDPQFVGLDNYKSLFAEPEIGSAIGNTLLYTLILLIGVPLSVAIASMVELPGLRGKSVYRMIYFLPYLAMPMAVAQVWKVLYNGNFGLINQFLRVVGVDDPPYWIVTPGFAIVAVSVFGLWCSIGFNVIILSSGLKGIPRELYEAASIDGATGVKQFRWVTVPLLTPSIFFLSITTTIGGFQLFDALFAMIGRGNPAEPKTRSLVSLFYRQAFVDSNQGAGAATAIVILLFVAIVTVIQFIGQKKWVNYV
>NZ_CP040635.1|WP_126412889.1|396616_397456_-|carbohydrate-ABC-transporter-permease
MAKKQGHVSQKRYLPVHILLILGGIVMVFPFVYQILMSLSTNAQIQAVPPKFIPEHWKWSNYSDVFAKLPFLHQFWVSIEITVLRTVVQLLLCSMAGYAFARMRFKGRGLLFGLLLAILMVPGQSYLIGQYQVVQNLGLLETPWGIVLPGFFSAFGVFLMRQAFMSLPMELEEAARLDGCNPWQTFWRVMFPLVNPSLFAVMITTVLWSWNDLLWPLIVTTREESMPLSVGIATLAGQHSTDYALMMAASTMAMAPIFILFFSMQKRVIEGLATSGLKG
>NZ_CP040635.1|WP_138679763.1|395426_396464_-|L-threonine-3-dehydrogenase
MKALVKTRPAPGLDLVDVPEPVAGPNEVLIKVMRTGICGTDVHIDRWDGWARHRVTTPRIVGHEFCGRIVDLGSAVVDLEIGQFVSGEGHYVCGRCRACLAGERHLCRNTRGIGYAIDGAYCQYFAMPASNVWVHHIAGLDPDVAAIFDPFGNAVHTALQFPCLAEDVLVSGAGPIGIMAALVAQFQGARNVVVADVSPQRLALARALGLGNTVDVSREPLAGVWDRFDMREGFDIGLEMSGSASSLTAMIANMAHGGRIALLGTPTAPTEVDIEKVIFSMLTLQGVTGRQIFETWYAMASLLRSGLDISGVITDRVPVTEYRRAFDIAGNGRSGKVVMNWEALD
>NZ_CP040635.1|WP_138679762.1|394131_395361_-|glycine-C-acetyltransferase
MYGEVRDQLTGQLDALRKEGLFKTEDALTSPQSASITVADGRRVINLCANNYLGLADSPTLIAAAAKALDTWGFGMASVRFICGTQTLHQQLEQAITEFLHPDDPQSWDTILYSSCFDANGGLFEPLFGADDVIISDELNHASIIDGVRLSRARRLRYRNQDMADLEDQLRDAAGARRVVIATDGVFSMDGFVAPLPQICDLADRYGAMVMVDDSHAVGLVGATGAGTPEHWGVRDRVDILTGTLGKALGGASGGYTCSYREVVETLRQTSRPYLFSNSLAPSIAAATLATLDLLRRSPELLERLRENTRYFRSQMTRRGFDIPASDHPICPVMIGDAVAAARMADAMLARGVYVRAFSYPVVPRGRARIRTQMSAALDRTQIDRAILAFEQAREEIDPSSPSRGKVGS
>NZ_CP040635.1|WP_097799304.1|393748_394135_-|DUF488-family-protein
MTTFTVLNIRDDLAGKDGEPPAVGGYRVLVDRLWPRGISKVRAALDAHPKEVAPSTELRKWFGHDPAKFDAFVERYRQELEASGAARDLLDELADQDDVDLLYDAKDREHNNAVVLKAVLDELAADRG
>NZ_CP040635.1|WP_138679761.1|392810_393656_-|DedA-family-protein
MDRPADEQLNPSSDVPDERAAVDERAAGREDAAADGGAVANEGTTADGGTAADEEAPWWQDSGMPWHQKPGKRDYCCMACIGLVGVVGLAMLPLKGWLLGLRPDIMLGVSGSRIGAAATGALVAVGSAPHWWAWLLLGSLVSIKLDWVYWWAGKLWGRGMIEVWAGSSPRAQRRYDRLERWAGRLGWLGILVAYAPIPLPLMPVVFVLSGASGMKLRTFLIIDFIAATVWNLGFLLAGRAVGDPIVDLLHEYNKVVNWVTVVLLVAVLVPIFLRSGRRTAR
>NZ_CP040635.1|WP_138679760.1|392226_392745_+|O-acetyl-ADP-ribose-deacetylase
MATVEILRTDITTLAVDAVVNAANSSLAGGGGVDGAIHRAAGPTLDVECRTLRQTRYRAGLATGAAVATSAGRMPAKWVIHTVGPIWDGSGHQDGLLANCYRHSIAVADEVRAYSIAFPCISAGVYGYPIDRASRVAVTTCRQARPDIVNRIILVAYDNRAEKALQAAMAES
>NZ_CP040635.1|WP_138679759.1|391167_392109_+|dihydropteroate-synthase
MSSLGPGRAGQRSLTSVLSQDPTLRQPAALILRGRRFDASHPAVMAVINRTPDSFYSQARHTFDDALRRLDEVAGHGADIVDIGGVRAGQDGPEVCEEAEIERVRPFLERARAEHPEILLSLDTWRSGVALACAGLIDVVNDTWAGADPELAGVAARLEAGHVVSHTGGLPPRTDPHHVHYERGVVADALTELARSAAHDREIGIPAERIIIDPTLDFGKTTADSLACLRRTDLFVDLGYPVLVAASRKDFVGETLDLPVDDRLEGTLAAVAVSVWLGATVIRAHDVRATRLVADMVSSIRGDRPPARSQRGV
>NZ_CP040635.1|WP_138679764.1|402596_404051_+|L-serine-ammonia-lyase
MAVSVFDIFKIGIGPSSSHTVGPMRAARVFAGDLASDPRYRELTRVRAQLFGSLGSTGHGHGSEGAVLLGLEGEDPATVDTDAMRPREAMIRTSGRIALNAARPDESLEIGFDADEDLVLYRTRSLPFHPNGMIFTAWADDGVVDERTFYSIGGGFVVEHGDDGHPAVVPDSTPVPFPFRTGAQLLEHCVDNRMSIPEVTMANEVSLRSEDPGRAEERVREGLLHIWEVMHDCVERGTSRSGVLPGGLHVRRRAMKMRRDLEARERRVPGSPEPFGALDWLTVWALAVNEENAAGGRVVTAPTNGAAGIVPAALHLVVRYLVVDRVTDSGTPGVGTEDDDAIVAFLLAAGAIGTIFQQSASISGAEVGCQGEVGVACSIAAAGLTQVLGGTVHQVCNAAEIGLEHHLGLTCDPVGGLVQIPCIERNAVGAIKALTAARLACAGDEQQIVSLDQVIRTMMQTGRDMKRKYKETARGGLAVNIVEC
>NZ_CP040635.1|WP_138679765.1|404149_405154_+|IS481-like-element-ISPfr15-family-transposase
MTHANAPLTPAGRLRLAACIVDDGWPLRRAAERFQVSPATAKRWADRYRAGQPLIDHSSRPAHSPNRLSRRTEHRIVGLRFTRRWGPHRIAYHLHIPRSTVGRVLERYHMPVLANTDQATGLPVRRPDPVRYEKQAPGDLIHVDIKKQGRIPDGGGWRAFGRGSVQDRTARAAGDRAARAGAPASRGYRYLHHAVDDHSRVAYSEICDDEKKETAAGFMTRALTFFESIGVAVKAVMTDNGACYRSRVFSQVLDDAKIGHKWTRPYRPQTNGKVERFNRSLAAEWAYARDYTSETEREAAYTEWLHHYNHHRPHTGIGGQTPSERVHNLTGKYS
>NZ_CP040635.1|WP_138679766.1|405309_406845_+|MFS-transporter
MTELQRGDQTRPWPSLWAMLIGFFMILIDTTIVSVANPSIQRGLETSTTGVLWVTSAYLLAYAVPLLVTGRLGDRFGPKKVYLIGLVIFTLASLWCGLSNLLPGSGITNLIIARAVQGLGAAVMAPQPMAVLTRTFPRENRGGAMALWGATAGVGTLIGPILGGVLVDALGWEWIFFVNVPIGIVGLVLVTRLVPNLELRTHQFDWLGVAISGTAMFLLVFSLQEGNSYQWNGWVWAGIIAGVVVMGLFVWWQAVNRNEPLLPLNLFSDRNFSLANLAIAAVGLAVTSLFVPLIYYFQLVHGMRPTESALMTAPSSILGLVLAAPAGRLTDRVHPALLAGPGMALMSVGMWLYATLLSPTVGWGWLLLPSAVMGLGSAFVWGPISATATRNLPLHLAGAGSGVFNATRQLGSVIGSAAVAALMTNRISTQLSAATGGRGGHGAAGMGDAASLPAFLKAPFTTAMAQTVVLPAIVMMVGVIAAVFFAKPGFMDPGTRPAGSEDVDAALSDKA
>NZ_CP040635.1|WP_138679767.1|407028_408141_+|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC
MATVQYKEATRVYPGTDRAAVSKLNLDIGDGEFMVLVGPSGCGKSTSLRMLAGLEEVNAGSIWIGDRDVTDLPPKDRDIAMVFQNYALYPHMTVADNMGFALKMQNVPKAERQQRVLEAAKLLGLEDFLNRKPKALSGGQRQRVAMGRAIVRNPQVFLMDEPLSNLDAKLRVQTRTQIAALQQRLGVTTVYVTHDQVEAMTMGDRVAVMRDGLLQQVDTPITLYDAPANLFVAGFIGSPAMNLIDGTRVDGGIKVGDFVVPVAREVLDKAPNETSFTLGIRPENFSLADEGIPLDVAVVEELGSDAYLYGSLTGSGRAANLEDGEGHQIVARISSRRPPQHGAQVRLGVDPTTVHVFSKESGERISNPVS
>NZ_CP040635.1|WP_138679768.1|408341_409241_-|hypothetical-protein
MSTSTPTGPRRALDESASHDLGTEASDDSLLEPLDAAPRRARPRLATRVRRRAVVGVTAVAALAVIGSGVVAGANGGSGVADRAEAPAAWTTTATPASEGSTASATPSRGERSRTGGISRSDASRPPVTTSARATEMGRLTASASPTRATTKPSATATPTRTKTTTRTKATTSPSATRTTTKAPTRSASKVSIGDTSGLAAITVALMRAVKARYPQVSLLTAGSQDHATGHAVDIMVSGGMGDEIAAYVRANASSLEVHYIIWSQKIWNVQRSSEGWRPMSDRGSTTANHYDHVHVSVS
>NZ_CP040635.1|WP_138680815.1|409603_410761_+|O-succinylhomoserine-(thiol)-lyase
MRGLTAGIAAPELRSAVVPPLYLSTNYVFSGLDGRPQFDYSRGHNPTRDLLGEALATLEHASGATVTSSGMAAITLLIETTVPVGGHVIAPHDCYGGTWRLLDTWSQTGRLTVDWVDQTDPDHLTQALGQFDGAPVHTDLVLVETPSNPLLRITDIAEVSRLGHEAGAVVAVDNTFCSPLLQRPLTLGADYVVASDTKFINGHSDVVGGSVASATTEGAERIAYHANVIGVTASPFDSWLTLRGLRTLDARLRVHAENTRRIVDTLTCHPAVTAVHWPGLADHPGHDLAARQQDGPGSLLSFELAGGLDAVRRFLDGLRGFTLAESLGGVESLVCHPATMTHAAMSEKAKADAGVTESMIRMSVGIEPAEDLVTCLTEALGRAAS
>NZ_CP040635.1|WP_138680816.1|411065_412352_+|DUF4032-domain-containing-protein
MVRFIKVGSDVYAAKEVIEHLAIHEYRLLTDLKRLGTPSVEPIGVVTGRVDSSGEALDPILITRHLQFSLPYRSLFHTGVRQDTVMRLLDALVVLLVQLHLVGFLWGDVSLSNVLFLRDADAFAAYLVDAETGELHDRLTDGQREHDLQIARTNMFGEFLDLEEGDMLDSSLDPLNLVTTIETRYRQLWSELTGAEEYAGSDISQVESRVRRLNALGFDVAELDIETSPDGSTLRIQPKVVDAGHHQRRLMRLTGLDVEENQARRLLNDLDTFRARKGLQHVDEAVVAHMWLTECFEPVVAEIPPELNRKRELAQFFHEVLDYRWYQSQREHREVSHIEAAKGYVRDVLAKLPDEAMSIESVVPVAGENVSDQAVHKMVNPYDPSLGYVEDEEEEPPYDPWEDAEANEDTGPEVLDMAALRARSKSKR
>NZ_CP040635.1|WP_138679769.1|412429_412723_-|hypothetical-protein
MAEIRTHKSSSNPIAQALAAAMGDPIRPLTPGARPVGADDDDRPEAAGPASLTMAAGWQGFTVGTVSAGEPAGKAGSAEGAEAADDAADGEADEQDA
>NZ_CP040635.1|WP_138679770.1|412761_414237_+|cysteine--tRNA-ligase
MTFQLYNTASHRTETFVPLVPGEVSIYHCGMTVQGSPHLGHIRKEVVFDVLRRWLEHSGYRVTVVANVTDIDDKILTKSAQQGVPWWALAYHFETELHEAYHALGCRPPTYEPRATGHIPEMIELISTLIDAGHAYPADDGSGDVYFDVRSWPRYGELSGIKVDEMAPAEDSDPRGKRDPRDFALWKGHKDSEPLTASWQTPWGRGRPGWHLECSAMAGKYLGDAFDIHGGGIDLRFPHHENELAQSAAAGRPFARYWMHNAWVTMAGEKMSKSLGNTARVTEVTRNHDPRAVRYFLLAPHYRSAIEFSPSDEQTQGSLDEATKAIERIDGFLRRADELAADFPAAVSDAQTDSATDTSAPIPQEQRFAAAMDDDLGTPGAVAALFEAISAGNRAIGAGDAEQTAVIAAGVRRMLDVLGLDPDSAEWAGVGPGASPDKLEPVVDGLVQAMLKQRAEARARKDWAAADAIRDTLSDLGLTVEDTQVGARWSL
>NZ_CP040635.1|WP_028703153.1|414373_415363_+|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MPGNSQRRGAGGNKAGKFAGKGSAAGSGGRVRRGLRGRGPTPRAEDRPYHKAYKDKQQRTTKQQGRPGAGGSRPGSGSGQGSRGAGPEWVIGRNPVLEALHAGLPVRTAYIAEGAEHDSRLREILSYAADHNMPMLQTTRGELDRMTGGAVHQGVAIRMPEYEYAAVDDLIAAGAESSHGGLIVALDKVTDPRNLGAVIRSAAAFGAQGVLIPSRRSASMTAAAWKSSAGAAARVPVAMASNLNQALAKLAKTGYTIVGLAGEADADIADTHGLDGPLVLVIGSEGEGMSRLTREHCDQVASIPITGIESLNASVAASIALYEVARARA

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Crispr_ID: NZ_CP040635_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040635_3

949351-949436

Orphan

Consensus_repeat	Method
TGACGCTGGGACGCCCTGGTCTGAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040635_3

>merge|NZ_CP040635|3|949351-949436|CRISPRCasFinder
TGACGCTGGGACGCCCTGGTCTGAGCAAGCGTGGCAAGAAGTCGGCGTTCACCGTCAAGGTGACGCTGGGACGCCCAGGTCTGAGC

>NZ_CP040635|3|3|949351-949436|CRISPRCasFinder
TGACGCTGGGACGCCCTGGTCTGAGC	AAGCGTGGCAAGAAGTCGGCGTTCACCGTCAAGG
TGACGCTGGGACGCCCAGGTCTGAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040635.1\|WP_097799971.1\|946188_947484_-\|peptidase-M75-family-protein	unknown	unknown	gnl\|CDD\|271139
NZ_CP040635.1\|WP_028703647.1\|942024_942471_-\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|234659
NZ_CP040635.1\|WP_028703650.1\|943665_943956_-\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|179034
NZ_CP040635.1\|WP_138680007.1\|949951_952171_-\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|223953
NZ_CP040635.1\|WP_097799630.1\|949477_949858_-\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP040635.1\|WP_138680006.1\|947624_948644_-\|iron-transporter	unknown	unknown	gnl\|CDD\|272930
NZ_CP040635.1\|WP_028703646.1\|940746_941616_-\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|234712
NZ_CP040635.1\|WP_138680005.1\|944671_946147_-\|deferrochelatase/peroxidase-EfeB	unknown	unknown	gnl\|CDD\|273606
NZ_CP040635.1\|WP_138680008.1\|953179_954022_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223377
NZ_CP040635.1\|WP_097799626.1\|942866_943520_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|236092
NZ_CP040635.1\|WP_138680841.1\|959356_959806_+\|DUF4186-domain-containing-protein	unknown	unknown	gnl\|CDD\|372733
NZ_CP040635.1\|WP_036982176.1\|954024_954864_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_CP040635.1\|WP_138680839.1\|937258_938680_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NZ_CP040635.1\|WP_138680010.1\|956753_957815_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143481
NZ_CP040635.1\|WP_028703648.1\|942485_942725_-\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NZ_CP040635.1\|WP_138680004.1\|938814_940518_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|237797
NZ_CP040635.1\|WP_138680011.1\|958058_959282_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|170080
NZ_CP040635.1\|WP_138680009.1\|955572_956757_+\|peptidoglycan-bridge-formation-glycyltransferase-FemA/FemB-family-protein	unknown	unknown	gnl\|CDD\|367067
NZ_CP040635.1\|WP_138680840.1\|954907_955390_+\|GyrI-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|214874
NZ_CP040635.1\|WP_028703653.1\|952270_953068_-\|deoxyribonuclease-IV	unknown	unknown	gnl\|CDD\|179214

Protein	Function_ID	Function_description	E-value
NZ_CP040635.1\|WP_097799971.1\|946188_947484_-\|peptidase-M75-family-protein	gnl\|CDD\|271139	cd14656, Imelysin-like_EfeO, EfeO is a component of the EfeUOB operon. This family includes the EfeO domain, an essential component of the EfeUOB operon which is highly conserved in bacteria. However, its biochemical function is unknown. EfeO contains an N-terminal cupredoxin (CUP)-like domain and C-terminal imelysin-like domain that may bind iron. Algp7, a member of EfeO family protein from Sphingomonas sp. A1, is found to bind alginate at neutral pH, but does not contain the CUP domain, thus having a role that does not seem to be related to iron uptake. Some members of this family are fused to an N-terminal putative EfeU ion permease domain. The imelysin-like domain of this family also contains the GxHxxE sequence motif and a highly conserved functional site, suggesting a similar role to other imelysin family proteins containing the same motif.	4.25596e-67
NZ_CP040635.1\|WP_028703647.1\|942024_942471_-\|50S-ribosomal-protein-L9	gnl\|CDD\|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	3.37464e-55
NZ_CP040635.1\|WP_028703650.1\|943665_943956_-\|30S-ribosomal-protein-S6	gnl\|CDD\|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	5.87561e-36
NZ_CP040635.1\|WP_138680007.1\|949951_952171_-\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|223953	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism].	7.07974e-142
NZ_CP040635.1\|WP_097799630.1\|949477_949858_-\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	5.11009e-15
NZ_CP040635.1\|WP_138680006.1\|947624_948644_-\|iron-transporter	gnl\|CDD\|272930	TIGR00145, Uncharacterized_protein_slr0964, FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species. [Unknown function, General].	1.16046e-46
NZ_CP040635.1\|WP_028703646.1\|940746_941616_-\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	1.98766e-96
NZ_CP040635.1\|WP_138680005.1\|944671_946147_-\|deferrochelatase/peroxidase-EfeB	gnl\|CDD\|273606	TIGR01412, Probable_deferrochelatase/peroxidase_EfeN, Tat-translocated enzyme. This model represents a small family of proteins with a typical Tat (twin-arginine translocation) signal sequence, suggesting that the family is exported in a folded state, perhaps with a bound redox cofactor. Members of this family show homology to Dyp, a dye-decolorizing peroxidase from Geotrichum candidum that lacks any typical heme-binding site.	1.05322e-128
NZ_CP040635.1\|WP_138680008.1\|953179_954022_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223377	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only].	9.31582e-72
NZ_CP040635.1\|WP_097799626.1\|942866_943520_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|236092	PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional.	1.54676e-82
NZ_CP040635.1\|WP_138680841.1\|959356_959806_+\|DUF4186-domain-containing-protein	gnl\|CDD\|372733	pfam13811, DUF4186, Domain of unknown function (DUF4186).	6.19584e-65
NZ_CP040635.1\|WP_036982176.1\|954024_954864_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	2.23842e-41
NZ_CP040635.1\|WP_138680839.1\|937258_938680_-\|MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.1194e-32
NZ_CP040635.1\|WP_138680010.1\|956753_957815_+\|alanine-racemase	gnl\|CDD\|143481	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. AR and other members of this family require dimer formation and the presence of the PLP cofactor for catalytic activity. Fungal ARs and eukaryotic serine racemases, which are fold types I and II PLP-dependent enzymes respectively, are excluded from this family.	7.73219e-14
NZ_CP040635.1\|WP_028703648.1\|942485_942725_-\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	6.65437e-31
NZ_CP040635.1\|WP_138680004.1\|938814_940518_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|237797	PRK14713, PRK14713, bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase.	0
NZ_CP040635.1\|WP_138680011.1\|958058_959282_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|170080	PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional.	4.72695e-70
NZ_CP040635.1\|WP_138680009.1\|955572_956757_+\|peptidoglycan-bridge-formation-glycyltransferase-FemA/FemB-family-protein	gnl\|CDD\|367067	pfam02388, FemAB, FemAB family. The femAB operon codes for two nearly identical approximately 50-kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan. These proteins are also considered as a factor influencing the level of methicillin resistance.	5.65824e-34
NZ_CP040635.1\|WP_138680840.1\|954907_955390_+\|GyrI-like-domain-containing-protein	gnl\|CDD\|214874	smart00871, AraC_E_bind, Bacterial transcription activator, effector binding domain. This domain is found in the probable effector binding domain of a number of different bacterial transcription activators.and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.	8.42376e-07
NZ_CP040635.1\|WP_028703653.1\|952270_953068_-\|deoxyribonuclease-IV	gnl\|CDD\|179214	PRK01060, PRK01060, endonuclease IV; Provisional.	2.58961e-89

>NZ_CP040635.1|WP_138680006.1|947624_948644_-|iron-transporter
MFVANLLIALREGFEASLVVGIIYAYLVKADRRDLIGKLWLGVGLAALVPLAIGAVLTWGPKTLTFQAQEIIGGVLSLVAVAMVTWMVFWMGENSRQLKGDIESDLTRSLSSHGSGWGVVWIAILAVGREGVETALFIWATVKSSVQTNTVATTAGVVTGLAAAVLLGWLVYRGAVRINMRAFFALTGGFLILVAAGIGSYGIGDLQEAGVLPGIMTHAWDLSAWLPAASSPVYWLYVVAVAMFQVNLAPTLAQTIAWWVYLIPVMALFIAQVNGRLHGRARAANEGETSRTTSVLPEERPVPPGATPILPDGTPQLGSGTVPHPQPPQSPETTSRPLA
>NZ_CP040635.1|WP_097799971.1|946188_947484_-|peptidase-M75-family-protein
MALATAAVTALLATGCTDNVDDAAAPAGSATAVRPVFTITDDGCSLSTSTLPGGVVTVTITNKGTVPNEFEILTENQLQIVGEKENIGPGVTTTFTTALEKGTYYTACKPNMVGALKGIQKITVTAGSGASVDSGTAALEKRAITNYTAYVRDQVGQLLTGTQAFTKAYLAGDVVRARELYPVARSHYERIEPTAEAFGIKEAGDLDTALDLRVQDLAADAGKKVTDPSVLKSWTGWHRIEADLFTKNGSAFKFASQADRRAAADRLDKDTQSLYNLVYGKITGASGAFKLNLADVVTGASSLLEEVATSKIVGEEETFSHTDLSDFKANVEGAEVAYGNVAALVKKADADLDAEVTQSFKDLNSLLAKYQDGKDSMGNVKYVDYSTIAAVQKDAGEAPKDSAYTKAQRTFSDEVNVASEALGKVPGTILH
>NZ_CP040635.1|WP_138680005.1|944671_946147_-|deferrochelatase/peroxidase-EfeB
MTEEHHSQPGPDPQQGRDAVGADPAAATSGGAGDGGSTSRESGSKGVPGSEGQAPAGRPMVSRRAMLAGSGGAAAVFGMGGFAWGHHRGAESAEAASADHSTRTSYPFRGDHQSGILTPAQDSMFTAAFDMRDVDVRLVRSLLRDWSTAAEQMMAGELVGGQPLANRQAAPTDTGDAWDYPPSGLTITFGVGRGLFVDEKGRDRFGLKSRMPKILAEGMPRFANEALQSGQSDGDLLIQACADDSQVAVHAIRNLTRIAFGRAVMRWTQVGYGRTSSTSKDQQTPRNLFGFKDGTNNLKAEAPAEQLDEHLWVQPGDDQGDWMAGGTYFVARRIRMFLEIWDRLRLAEQEDTIGRDKMFGAPQSVASPSSARQEFTAVDLSAQQGGAPMVAADAHVAIVSPEQNKGRRMLRRGYNYTDGIDSLGRLNAGLFFIAFVRDPRTNFYPILMRMTTSDALTEYLQHQASALFAIPPGVGAAEQGIAEKLFKGVVA
>NZ_CP040635.1|WP_028703650.1|943665_943956_-|30S-ribosomal-protein-S6
MRKYEVMILIDPTVDEHQVDSLMERYLKVVTDEKGSVDKVDVWGKRRLSYEIQKKSEAVYVVLDVTCKPSTVQEVDRLFAIDEKILRTKVMRPDVH
>NZ_CP040635.1|WP_097799626.1|942866_943520_-|single-stranded-DNA-binding-protein
MAGETSITVIGNLTADPELRFTPNGVPVANFTVASTPRTFDRQSNEWRDGEALFLNCSVWRNYAENVAESLSKGMRVVVQGNLKARSYEDRDGNRRTVHELDVQEVGPSLRYASAKVTRNPSGSGQGGQGGGWSGGGSGNQGGGSGNQGGNSGGWGQQPQGGNSGGWDNNQSGNQPGRQSGAPSGNQGNQGSYNQGADNRGGGVDPWAQAQSDEPPF
>NZ_CP040635.1|WP_028703648.1|942485_942725_-|30S-ribosomal-protein-S18
MAGPQRKPVNKKKVVPVKTVHIGEVDYKDIALLRKFISERGKIRARRVTGLTVQDQRKVAIAIKNARELALLPYASTAR
>NZ_CP040635.1|WP_028703647.1|942024_942471_-|50S-ribosomal-protein-L9
MKLILTAPVPKLGEPGDIVVVKDGYGRNYLLPHRFAIRWTRGAETQIGQIKRARDAKEIKTREQAEEVRGQLEDFKVQIPVQAGDTGRLFGAVTPADIVLAVKRAGGPALDKRSIEIDKPIKTIGTHSVGVKLHEAVKGHVAVETVAK
>NZ_CP040635.1|WP_028703646.1|940746_941616_-|undecaprenyl-diphosphate-phosphatase
MNWWQAVILGIVEGITEFLPVSSTGHLRIVEHLLGFKTQGVGITAFTAIIQVGAIAAAIIYFWKDIVRIVAAWFRGLFNKEGRDDPDYTLGWGIIIGSIPVAVVGLVFKDAIQGPLSSIWVVAGALIIWSFVMMAADRRTDLGRGMKDVTLVDATIIGCFQALSPLFPGISRSGATISAGLFRKFDRTTATRLSFFMGIPALVAAGIFEAITEASHITASTDILIDGGMGVIGWGPTIIATLVSLVVAYFSIAWLLKFVSSNKFTGFIWYRIVLGVVLLVLAFTGLMAV
>NZ_CP040635.1|WP_138680004.1|938814_940518_-|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MTSTIHPSVPGALPRVLSIAGTDPSGGAGTAADMKSITAAGGYGMTVVTCLVAQNTTGVRAIHTPPTDFLAAQLKAVGDDVVVDGVKTGMLGTAAIIETVEQWLDVHQPPVLVVDPVMVATSGDRLLEPDAEAAMSRFCRRATVITPNIPELAVLVDDNPAPDQDAAVAQARAWAADTGVAVIVKTGHLDSRLATNLWVGPDGPLVEVPCTRVDTTSTHGTGCSLSSALATRLAAGDDPATALVWTTEWLHEAILHGSELVVGHGHGPVDHSHRMRRLAAAGQPVAWLTADDVPAALEIPDQLAPVTDAPAAVMPTAPATATDAPAPATPAAPDAPSAPDAPSAPDAPAAAVPAAGPWTAALWRAGSDLARRIADCDLVTALVDGTLSPGVFSFYLGQDACYLAGYTRALAAVAASSADPAEAADWAGGATASQVVEAELHRSWLGADSQPPAPSPVTRAYVDFLMARALGDDHPVGAAAVLPCYWLYAQVGASLPQVPDDHRYAGWLATYRDDAFITATATALGHVEKAMEVAAPAQRSAAARAFLISCRHELEFFEQALRMDGLR
>NZ_CP040635.1|WP_138680839.1|937258_938680_-|MFS-transporter
MPAAGRAALRAGVVGNWIDNVHVFLPLTALAPALAVIAGPGVAASTGAVIVIAMMLGRPLGGMILGRVSDRLGRTRTTRIAITGTACCALLIAAVPTHEILGAGTIAVILVLRFLGGIFVAGEYSAAIPLAMEWSRPKRRGLMSGLILSMAPWAQGSIAFATAGLLVGLGPQRYAAWGWRLMFVVGALCSLGMLIYYRYRVVDAPVLHRQAASPAHTAHSGTAQASSTHPADSRTSQTGPAADRPVAGVREVLVGRWAPAFWQVFTLMSGLWLLTNAVVIMLTARLSTDAGLPATGVSVAMGVASVAQAILMAVAGHLSTLTGRRNLLVVWGAVAALAGPGLWWATVNSHTLGRAAILAAVLQVITVSAYGPVSAYLSERFPSEVRSTGYGMGYSLSLIVPALYPFYLPTLERAVGSHSAIMGLVALGGILVVIGALCGPRLGPSDIDAGIDEVAHASTRRRALRVPTSAGSR
>NZ_CP040635.1|WP_097799630.1|949477_949858_-|rhodanese-like-domain-containing-protein
MGLRNFLANRGMPTGGIDLPAALTVLANGGVLVDVRTLPEYEAGHAPGAHLVEAKELVDDPFTAVYGDDPLAEPDPHFVLVCDTGFRSGHLVQAIRDKGYDADFLTGGLRAWREGGEILIPGPPRH
>NZ_CP040635.1|WP_138680007.1|949951_952171_-|long-chain-fatty-acid--CoA-ligase
MPVADISSRPGTDADPAAALLGSPVAGEDPAEVHLAHMFRNTVSRYAYRPASRVKVGEKWQIRTYADMGRRVEAISLALVEHGIARGDRVAIFSHNSPEWIEIDLAVMTVGAVPVPIYPTSTGEQVVHIIADAGVRIACVAGPAERDLVVSIHDRTTSLKAVVVIDTPESDEDGRSGSEDAAGGGVAGTSSATEGGVAGTSSATEGGVAGTSPAADSQDAGPSVPGGAHDNQDAAGGGLRVVALADVLSPQRTPERTAELKTGVEERMSASSGDDVASLIYTSGTTGAPKGVMITHRAAMAQARTLDAFFDIRPSDHSLCFLPLSHALEWAWSMVLLTHGCLNTFVTNPKTIASMLVEVRPTLFVSVPKLYEQVMTVAHEKVSDSRVKTRLFNWSIDVGRRWWQASEDGRRPELGLRLRHKVADALVLRAVRAAVGGPKTVLAAGGAPLRQEVEEFFASVGLLVCQGYGLTEASPLVSFNSPGAHKFGTAGKPLVGSEIKEGAEGEILYRGPNIMKGYWNAPEATAQTIQDGWLHTGDVGHVDEDGYLVITDRLKDIIVTLNGKNISPQPIEGLLMADPLFEQAVILGDNRPCLTLLVKPSLPRVEELAEKLHLSLSGVDAMRSPELVEELRRRVADLTAKLPHQEQIRDLRVLWDDFTQDNGLLTPTLKVRRREVEKRFTEVIDEMYSRLAKLRKADHVRHDHEEAEHEKAEHGHAGDGHGHAGHGHGHGDGHRGTGE
>NZ_CP040635.1|WP_028703653.1|952270_953068_-|deoxyribonuclease-IV
MTEWTIGGSVDEAELVAQTRERGATLAQVMLGDPQSWRKPVVQHPGGAAGLREAAGEAGISVVVHSAYVINVASLNNRIRIPSRKLLQQTLTIAAEMGAIGVVVHGGHVREGEPIEKGQDNWRKAVDGLEMPVPLLIEDTAGGKHAMARQLERIRGTWEAIRTASGFESVGFCLDTCHAFAAGLDMTTLVDDIHAVTGRIDLVHANDSQGPAGSGRDRHANLGQGQIDPDELVRVIRAAGAPVVVETPGGAQDQAADIAWLRERL
>NZ_CP040635.1|WP_138680008.1|953179_954022_+|SDR-family-NAD(P)-dependent-oxidoreductase
MSSCLVTGGTSGIGREFVTQLAARGDDVIIAARDVDRMAAIKAEIEPRYGVSVETIRADLAVRADVDVVAARLEDRERPVDLLVNNAGFGLHAKILDPETLPLQEKAFDVMCRAVLILSAAAGRAMRDRGHGGIINVASSSAWINTGNYSAIKAWVLTFTEGLANELHGSGVKVEALCPGWVHTEFHSRAHVTATNLPEVVWVDAETLVRESLSDLAKGKVVSVPTARWKAAIAVAGVVPRSTMRWLSRNLTSSRDKTDFPSPHPDGSPDRGPSGEAGER
>NZ_CP040635.1|WP_036982176.1|954024_954864_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MPIKPKVKDRGRYTSDINAVARQAANMLLLKPLVWRVTKVTVHGLENLGGLDGAYVITANHSSHLDTPLIFGSLPKRLSRYLSTGAAADYFFTNWWRAFTPVLFFNAFPVDRGKGRTRSGSAPHTHRGLAGSLLTDGIPLLIFAEGTRSRTGGMGTFKPGAAALAISRGVPVIPVALVGAFSAMPSDLQGLPKGRPPVHVVYGHPMQPAPGEIAHEFSERIRRQIITLHDQTARAYGMPTQADYARTLALGKAADKAEKAEKASTEKGDERPPESPSAG
>NZ_CP040635.1|WP_138680840.1|954907_955390_+|GyrI-like-domain-containing-protein
MRRVPGQTVLAVWRRVSIDDLDSWIDEATELMRTLAPVAAAQFVIYHDGLSTGHDGTVEVCQPIDPDSPGPADLPDGVVRRFESGRVEAYITLTKAELAYPEVDEFYQHLDDACTARGWRRTGPPRELYWADWDATAMDEPVCDVCFGIEEPGIDRADLP
>NZ_CP040635.1|WP_138680009.1|955572_956757_+|peptidoglycan-bridge-formation-glycyltransferase-FemA/FemB-family-protein
MSVIQVRQISPAQHLAFLHDWAAPGSTAEETVSFLQTPAWAKVKQEWRSESIGIVRDGGPGGPELLGVGLVLYRQVPKLKRYLAYLPEGPVLDWTSPDLPEILDALRAHAKRRHAFALRIGPTLPHRIWRKDTIKDAIADESITALSQAPADVTNLHATRLANQLRHLGWRPPKAAEGFAAGQPKFNFQLPLVTWTGGVRTRLSEDEVLAGMNQLWRRNIRKADKKGVEVSRGGREDLAAFHKVYVETAGRDGFTPRPLDYFQTMWDALNGEDPDRMHLYLAHHEGDLVASTTWVHVGRHTWYSYGASTSAKRDVRGSNAIQWQMIRDSMAVDADVYDLRGITEGLEADDPELGLIKFKVGSGGEAVSYIGEWDLVIDPLLYKAFDWYMTRRSR
>NZ_CP040635.1|WP_138680010.1|956753_957815_+|alanine-racemase
MSLVLHVDAAAWRSHQDAVVAAREGIVPVAKGNGYGFGLGRLGAEAARLGCDVLAVGTAEEVAAVRAGIPGDSESGAGSGFSGDVVVLTPWRPGDPVAEQLISDPHVITTLSRVDDVAAVAAGHPGARVILEALTSMARYGLEPGQFAEAVAAAGPLEIVGWTIHLPMIGEHLGEATDLATSALAAHRAPLWVSHLSAGDLDRFRRTFDVPVRPRIGTELWLGAHGAMRYLASVQDVHEVTAGQRVGYWQRRAGRRHHHLAVVSGGTANGVAMQAPTAAATLRQVVQTLANGAMEAGRLALSPYSAGGHKLFFAEPPHMQASLLWAPPSVHVGDELEVTMRATTATPDQLILD
>NZ_CP040635.1|WP_138680011.1|958058_959282_+|FAD-dependent-oxidoreductase
MSSPEHVVVIGGGLAGAKTVEALRDQGFEGAVTLIAAESDLPYERPPLSKGFLAGSAPFEEAVVHPQEWYTEHSIHMRRGERVTAIDPGAHQVSVDDGSTIGYDKLVLATGSVPRTASLPGAAAHGVHQLRTRTDAEQIRAEFGKGRRLVIIGGGWIGLEVAATARGAETAVSVIEPSELPLARAIGPKVAAVYAEVHRAHGVDLRTSTTAAEILTEDGRATGVKLTDGEVIDADAVVIGIGAVPVVDLAESAGLAVDDGVLVDAGLRSSDPDIYAVGDIANQQHPRLGRRVRVEHWAAALNQPAVAVTNLLGGSAEYDELPYFFSDQYDLGMEFYGDISTAARVVIRGDLEAREFVAFWLDSDKHITAVMNVNVWDVIDAVKPLILAGRVVDPAKVADPDVDYASL
>NZ_CP040635.1|WP_138680841.1|959356_959806_+|DUF4186-domain-containing-protein
MEAGPEAGVGAGGPADRRPEAVAATLARLRRSTFRSRFHLSASDRDYARAKGRQTIVDHARDLLRGRIGAAAPHNDGRQTPMRGHPVFIAQHATATCCRGCVAKWHGIAAGHQLTDVELDRLVEIVMAWIDTELTAHPASPTPDHPTSD

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Crispr_ID: NZ_CP040635_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040635_4

978327-978480

Orphan

Consensus_repeat	Method
GGCGCCCCTCCCCACGGATGCAGGGAAAAGGC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP040635_4

>merge|NZ_CP040635|4|978327-978480|PILER-CR
GGCGCCCCCATCCACGGATGCAGGGAAAGCCGTCGACCACCGTCACAGTCGGCGGAACATGACGCCCCCTCCCCACGGATGCAGGGAAAAGGCCTCATCCATGACATGTCCTCTCAGAATGGGGCGCCCCTCCCCACGGATGCAGGGAAAAGGC

>NZ_CP040635|4|1|978327-978480|PILER-CR
GGCGCCCCCATCCACGGATGCAGGGAAAGCCG	TCGACCACCGTCACAGTCGGCGGAACATGACGCCCCC
TCCCCACGGATGCAGGGAAAAGGCCTCATCCA	TGACATGTCCTCTCAGAATGGGGCGCCCC
TCCCCACGGATGCAGGGAAAAGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040635.1\|WP_071161730.1\|990984_991359_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040635.1\|WP_138680024.1\|986993_988325_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240541
NZ_CP040635.1\|WP_138680019.1\|970918_972274_-\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	unknown	unknown	gnl\|CDD\|235412
NZ_CP040635.1\|WP_138680015.1\|965222_965474_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040635.1\|WP_036981718.1\|976896_977376_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP040635.1\|WP_138680021.1\|977510_978056_+\|YceI-family-protein	unknown	unknown	gnl\|CDD\|377274
NZ_CP040635.1\|WP_138680026.1\|989252_990353_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|238919
NZ_CP040635.1\|WP_138680844.1\|985984_986449_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NZ_CP040635.1\|WP_138680018.1\|968247_969351_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP040635.1\|WP_138680023.1\|982835_985700_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|173412
NZ_CP040635.1\|WP_138680843.1\|981669_982839_+\|DNA-repair-exonuclease	unknown	unknown	gnl\|CDD\|277319
NZ_CP040635.1\|WP_138680016.1\|965558_966260_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213231
NZ_CP040635.1\|WP_138680025.1\|988321_989017_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP040635.1\|WP_138680022.1\|979808_980699_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP040635.1\|WP_097799642.1\|972270_973896_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|274552
NZ_CP040635.1\|WP_138680017.1\|966256_967921_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040635.1\|WP_028703265.1\|969663_970917_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	unknown	unknown	gnl\|CDD\|236869
NZ_CP040635.1\|WP_138680020.1\|974167_975130_-\|D-glycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|240626
NZ_CP040635.1\|WP_138680027.1\|990485_990983_+\|Cys-tRNA(Pro)-deacylase	unknown	unknown	gnl\|CDD\|237976
NZ_CP040635.1\|WP_138679867.1\|979530_979818_+\|transposase	unknown	unknown	gnl\|CDD\|225511

Protein	Function_ID	Function_description	E-value
NZ_CP040635.1\|WP_138680024.1\|986993_988325_-\|MATE-family-efflux-transporter	gnl\|CDD\|240541	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	5.5014e-98
NZ_CP040635.1\|WP_138680019.1\|970918_972274_-\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	gnl\|CDD\|235412	PRK05329, PRK05329, glycerol-3-phosphate dehydrogenase subunit GlpB.	5.9714e-130
NZ_CP040635.1\|WP_036981718.1\|976896_977376_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.01454e-10
NZ_CP040635.1\|WP_138680021.1\|977510_978056_+\|YceI-family-protein	gnl\|CDD\|377274	pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	1.0327e-54
NZ_CP040635.1\|WP_138680026.1\|989252_990353_+\|sugar-kinase	gnl\|CDD\|238919	cd01944, YegV_kinase_like, YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.	8.02052e-63
NZ_CP040635.1\|WP_138680844.1\|985984_986449_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	7.15436e-08
NZ_CP040635.1\|WP_138680018.1\|968247_969351_+\|histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	4.06361e-19
NZ_CP040635.1\|WP_138680023.1\|982835_985700_+\|AAA-family-ATPase	gnl\|CDD\|173412	PTZ00121, PTZ00121, MAEBL; Provisional.	5.28119e-10
NZ_CP040635.1\|WP_138680843.1\|981669_982839_+\|DNA-repair-exonuclease	gnl\|CDD\|277319	cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	6.3089e-28
NZ_CP040635.1\|WP_138680016.1\|965558_966260_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213231	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	2.26849e-102
NZ_CP040635.1\|WP_138680025.1\|988321_989017_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	5.97498e-06
NZ_CP040635.1\|WP_138680022.1\|979808_980699_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	8.62884e-70
NZ_CP040635.1\|WP_097799642.1\|972270_973896_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|274552	TIGR03377, glycerol3P_GlpA, glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. [Energy metabolism, Anaerobic].	0
NZ_CP040635.1\|WP_028703265.1\|969663_970917_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	gnl\|CDD\|236869	PRK11168, glpC, anaerobic glycerol-3-phosphate dehydrogenase subunit C.	0
NZ_CP040635.1\|WP_138680020.1\|974167_975130_-\|D-glycerate-dehydrogenase	gnl\|CDD\|240626	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH). D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	9.65395e-148
NZ_CP040635.1\|WP_138680027.1\|990485_990983_+\|Cys-tRNA(Pro)-deacylase	gnl\|CDD\|237976	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.	1.31624e-69
NZ_CP040635.1\|WP_138679867.1\|979530_979818_+\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.67568e-08

>NZ_CP040635.1|WP_138680021.1|977510_978056_+|YceI-family-protein
MTNLSDLNGTYVLDPAHTRLGFVTRHAMVTKVRGSFTDFEGTASGNGSDPSSAKVTVSIATDSFTTGVADRDAHIKSGDFLETDKFPKITFASTSAAVKGDDLELTGDLTIKGITKPVTIPFEFDGEAKDPFGNIRVGFEGKVKISRKDFGITWNAALETGGVLVSDDVTLELEVSAIKQA
>NZ_CP040635.1|WP_036981718.1|976896_977376_-|MarR-family-transcriptional-regulator
MTEDTPWLDDHQQRVWRLWLDVTNGLPVLLNRQLARDTDLSLQDFEVLVCLSETEGHAMRVVALADAMHWERSRLSHQLTRMEKRGQVRRESCCTDGRGQLVRLSDKGWDAVVAAAPGHAGLVRRVVFGGLDMDHLDELEQILNHIRDSLVKEREALES
>NZ_CP040635.1|WP_138680020.1|974167_975130_-|D-glycerate-dehydrogenase
MARIIVTAPQMPEALDRLSDHDVVGGDHFMDRAELESLIGDADALLTSLSDPLDAEMLARADRLKVIGQCAAGFNNIDLDAATARGIVVTTTPGVLHEATADLAFGLMLMVTRRLGEAERLVRAGTPWRYDHTFMLGAGLQGATLGIVGLGQIGEAMARRGAAFGMDVVYDARHDHDVSAIDAVNPHTAATRRVDLQELLAVSDVVSLHCPLTPRTAHLIDADALATMKDSAFLINTARGGCVDEAALAHALQTGQIAGAGLDVYEHEPTITPALLEMDNVVALPHIGSATRQTRGVMSALAARNILEVLAGRPAETPVN
>NZ_CP040635.1|WP_097799642.1|972270_973896_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A
MRTMDADVVVIGGGATGAGVVRDVAMRGYSAVLLDKADLGQGTTGRYHGLLHSGGRYVVSDPESATECAEENEIVTRIHADAVEKTGGLFVVTPDDPMEFSDQWTEGATKAKVPWTEISVAEALRREPRLNPGLKRAFAVQDGTVDGWQMVWGAAHSAEDHGAQVLTYTEVTEIIREGDQVTAVVAHDLKKDEQVRISTRFVINTAGPWAGRIADLVGCHDVEVVPGRGIMIAMNHRLVNTVVNRCIYPADGDILVPVHTVSIIGTTDVKADDPQRLAVPRNEVQQMLDSGEALIPGFRDSRAVHAWAGARPLFKDKRVAATDTRHMSRGMSILDHGTRDGVNGIVSIIGGKLTTYRLMAKNVVDVMCEQLGDDRPCTTDKEAVPGSTEGHTYVITHRLHDNEVARAKHLETTPNKTPSRAAIDDQIICECELMSRKMLTDLLAEQPDSTFDDLRRQLRLGMGPCQGGFCSMRATGVALEEGAVDVERATGLLRLFLKNRWIGLWPILYGEQVRQTALDDWIFQGTFDVEHLPVPESEVEL
>NZ_CP040635.1|WP_138680019.1|970918_972274_-|glycerol-3-phosphate-dehydrogenase-subunit-GlpB
MTATAITTTASWAGAQPHVVVIGAGIAGLTAALRLRRAGARVTQITKGLGGIQLGQGSIDILGYAPERVERPLDAIEAFAAANPEHPYARIGVDAVRAGVDFLREAAGEDLLVGDPERNVNLPTAVGAVRPTALVTPTMTAGELHDGLKLVIIGVAQLKDFHPMLIAQNLERTTLPDGGKVSARAVMTDFEPRQNEYDATGLTFARALDDPKTRRTFAEGIKGFVNEGETVGLPAILGEEDHKAAFAEISQIIGAPVFEIPALPPCVPGMRLNEALVKAVKDARVEFILGTKVTGFTAGPDGRLASVTASTAGHRREIAADAFVLAAGGFESGALKLDSHGHVLDTVLGLPLTLPEGVDEDHLVTDKYWGVAQPLFKVGVAVDDSMKVVADGKPVYDNVYAAGGVIAGATRWQEKSGEGIALGSAVKATDAILASLPVVAASAASPTAERN
>NZ_CP040635.1|WP_028703265.1|969663_970917_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C
MGVIEETFAGHEVARASLDNCVKCTICETVCPVAKANPLFTGPKYNGPQAERYRDGASVDHSLEWCDFCGICTLNCPQGVKIAELNEQAATKMKEQNGFPLRDRIIPETNMEGMLLSPMAPVANWALGLRPLRIVVEKVIKIHRDAPMPTAHTETLAKWLKHRKKPDITPTKGPVVFFQGCAGGYFETETSKKSIEVLEHLGYEVFVPKQSCCGLAKQSNGLFKGATKDILNLCDNLLKFGNELPVVSSSGSCIGMVKHEAHEVIGVDDPRLANVSVRSRDFCEFLMEEYRAGRLDASEFKEIDLTVPYHQPCQVKSQGMGFPAVQLMELIPGVKVIESNEPCCGIAGTYGLKAERYDTAQKIGKGVFEHMQNYNEGVGVCDTETCRWQIAKSSGVKIVHPVWLLHHALGLSDNLLK
>NZ_CP040635.1|WP_138680018.1|968247_969351_+|histidine-kinase
MASHPDSLRRFLSGGSVEVGLAGLLFVMELIGRRPDDPASALPLAFLTCAGAGLAAWHARIGAAISCLGFTAAAIVVPTVVTGSIYAPLVVILACAWRDDLWAGALASVWGYALSIWLSFRNTTTTAEDAQALLLWLGFYILPWILGLALRRVQRTERQRLTAQSEAQRRDTAAELHDNVTHDLAQIIARAQAARLGPEADRDVALADIVARGRRASAYLTNLMRVMRVGTPSPSVSLAEELQTGERTLAAAGFDMQIYTDCDVDAIAPEVSDVLGRIAREAFHNIVHHGDPTESCEATVRADKGRIAVSFTNATSTPYGGDGLGIIGMRERAELIGGTLRTRLSDGFWSLKLSVPITADSAEIPVP
>NZ_CP040635.1|WP_138680017.1|966256_967921_+|hypothetical-protein
MRHTGVMLWARHHRVGPSVAVAVIASAVVRGLVLLITSDGSGIEVAPLWIATVCAVPLLFMFTTETDTDRTAPRSLAARRGALLGIAVLTSGVISLAAFPTTIGEWGLIATWRDAVALLGLGLLSLAVLPPAAIWVAPLVAALASMMFSWPLHPGLSLGLWGALRAPADLLLDPGVPNLSIPLCLLIGAAGVVVLVNGLTWSPRPTAPVGRPHNRSVTPHRSSARAGIRRASLAVPMACLVAVVSAWPWVTSLSWWGGSPRLLLAGEIPASFLAIPCAVLAGVVTGQYRWRSGVAVWQKLSGRPAWTLLGRACGAAALTAVIAVGTPALVMALMATWDLASHDVGASVVATEFLAGWPPTLVVLAEVAAAAVLGVCAGWWNGRIWLAPACLILALAAMIATPRPPAQDVDQLWADRYGYTTCATVAGHDVTVCAPAPDKGYLPAAVTTVSQIYDQSAHPEALPRLIHLTTTGTMGGGMHPMGLEHPPDLGAAPGRGLTPPTALGSAAGDSLSYSTQAWCAGTDLADLQKLFGVEQYVQTPTMGKTLAALQKCRG
>NZ_CP040635.1|WP_138680016.1|965558_966260_+|ABC-transporter-ATP-binding-protein
MALAVDDLTVRYRRRTAVDAVSWRLGEGFHALLGPNGAGKSSLLRAIATLQPTVSGTVELDGRSGTEIRAHLGYCPQENLGRSRFTVREHLAYMCWLHRIPDSRVPSEVDRVIELVDLAERADDRISALSGGMRRRVGIGSALVGRPSLVILDEPSAGLDVAQREALSSVLQRVSAEAITIVSTHIVEDVLDHADTLTVMNQARFAHSGAFDEFAGSRDLEAVRSRYLETVTP
>NZ_CP040635.1|WP_138680015.1|965222_965474_-|hypothetical-protein
MNLLPGTDIEPLTIPNSTLNESEPTNAMNVSQWPTIHVMSITTREAEYAKEKFMRNRLNQECGFTITFTVIHLPLTAAVNTHH
>NZ_CP040635.1|WP_138679867.1|979530_979818_+|transposase
MSGSKYSPEFKNQVVLEVVDKHRTIKAVAESYNLVAQTVGVWVKEYRKKNPDPETENLTSAESAELARLRKDLREARMENEFLKKAAAFFAKESQ
>NZ_CP040635.1|WP_138680022.1|979808_980699_+|IS3-family-transposase
MTVAVRYTYIFSQEGNYPVRLMCRCLTVSPSGYYDWRARPISATARRRRDLASKIRFYFADSDGTYGYRRIAAELARAGEAVHPDTVRSIMRAEGLVAAQPRLRVRTTIPADDADGRPDLVERDFTAAQPGYKWVGDITYIRTLEGFCYLATVLDCCTKRAVGYAIDDHMRTGLICRAIDMAVRNCEYVRGATIFHSDHGSQYMSKEFTELLESYDIRLSVGRTGLCWDNAWAESFNATLKNERVHRVIYRTRDEAVRDIVRWIELRYNQKRLHSSLGYRTPNEIEAEYRESRQVA
>NZ_CP040635.1|WP_138680843.1|981669_982839_+|DNA-repair-exonuclease
MVKFLHTSDWQLGMTRHYLARRRGGDDDPQARFTSDRIDAVRRIGDLARTQGCAFVVVAGDVFETQNVSRQVITRTCRAMASIALPVYLLPGNHDSLEPGCVWDRPDFTQACPDNVTVLRDSTPIDAADGVQVIGVPLLSRHPSSDPVGPVVAGLTDDGTTRVLVAHGQLPGLSGQDVEGVLIDRPALDAAIARGAISYVALGDRHIRWPESPDAPIRYSGTQETTRFSDPGKGSVDVIEIADGRVSATPFPVGIWLHARVSRPMSTDEDIDALASELAGFDDPTHTIIRYDLHGGLTVTQNARLEALLQDQSDSFASLEPSEDRNDLTVLPDDDDLAGMDLPGWAGGAAQELADLAGPGRHDGDVAPATAVDALGLLRRLAARSEAGR
>NZ_CP040635.1|WP_138680023.1|982835_985700_+|AAA-family-ATPase
MRLHRIHVENFRSIHERTLTLPDSGLVIAEGLNEVGKTSMIEALDLLLDPKLKATSRAGRVAQTQPYGTDLPVVVEAEMTVGGVRLIHSKQFLHQPQARLEFVSGRRAGEVLTGEEATDAMAEIWRGTDDTLWQALRLMQAGSLEALSLRSSTALTAALDRAVRDQGGEGDDVAAPDGASGNGADRDGAGLLAAVTHEYEQYWTPTGKPGKVLKEAAAETERLTAELQQATARLAEVDTVVSDLEESQENLEDQQKSLAALKVSAARDAAALADLEDLEHAVTEATRAEQDARHLRDAAVDELKDRRAAVAELADARDAEEDARAAARTALEAVEAVESQFTEADQAWREADSARRKAKEAWDAARRRASELRDQARLERLNQTITTITALQAEIAEAENRIDTNPATAAGIKAARAAEQKLTAARIRLETASPRMTLSRLAEDAPELRVDGEPISGEGDDESRVVDRRTVVEVAEAWRITVVPAADVDDLAHQVEAAERDLAALLDPMRVATVEEARDLLSRRRREEDALMALRQRVARELEDAGAEAEGSGGTGSGVGAGSSVEAGNGAEAGSGAGSVSLADLIAVRDRITASSALVRETTTEVTMTNTETDAAPGMTDGSEALQGADQSTETPEQADQRADLLESAHEDADLAETTARSARDTVQERRSTAREAASAASSTLTSSHDQVHRLQDRLETAREQTSDQALEDAARAAEEQHKDATSRVAAASRELESHSPDQVREAAQASARRLARAGERLVASRGRHAELTGQLRGLDREGRQDRFDELSGLAHRSGIESAALTRRADAARLLHDTLIRHRDEEHRRYLEPFTREVERLGRGVFGRDMAVRVDDSLTVTKRLLNGAWLDWDQLSTGAKEQLGLVVRLATAQLVDPKDGVPVILDDALVYSDRVRTSRVLKEVATGSRNHQVIVLTSAPERYDGLDATRIPFQ
>NZ_CP040635.1|WP_138680844.1|985984_986449_-|GNAT-family-N-acetyltransferase
MTARACGDRSLGESTADNCSVDAGSGGARSAVVSQELQENEESAKGASSQGEDPSQTCSTSGRAGAGELIGLVRVVSDNCSVALVQDLLVAPAIHRCGVGSHLLMAAMDRYAVIRQLMLITDDDPATAAFYRSCGLRSLDQTHGIGFIRYNFAS
>NZ_CP040635.1|WP_138680024.1|986993_988325_-|MATE-family-efflux-transporter
MRVPSNAQSSRHHQVLNLAVPAFLSLVAEPFFLMADSAVIGHVGTVELAGLGVASTVLTTVTGLFVFLAYATTATSARRMGAGDREGAAQAGVDGVWLSVLLGVISALLLVFGAPTVVPWFGTAASTAQPAVTYLRIAGCGVPAMLVTMAVTGVLRGFQDTRTPLVVTVIAFSVNLILNLWFVIGLGWGIAGSAWGTLICQFGMALALVIVFVVRTMGTGVSLKFQAVGVLASMRDGVPLLIRTLALRASLLLTTWVAAGLGVVALASYQVSMTVWTFLTMALDALGIAGQALTGAALGAGDKSQARELTRLMVRWGLWVGVGLGVLLLAVHRVLPMAFSPDPAVRSALAAGLIVIALTQPWSGVVFVLDGVLIGAGDGRWLAGAQVVMLVAYLPMVLAVRMASPSGASAMVWMWVAFTGFMVVRGAILAYRERGDAWMRVGV
>NZ_CP040635.1|WP_138680025.1|988321_989017_-|TetR/AcrR-family-transcriptional-regulator
MPQARHATDGRRDTYHHGDLHHALVMAGLDLARTGGPDAVVLREATRRTGVSPNAAYRHFNGREALLDEVAVRATGYLTDAMNEAVVRARVEFANAEPKVRTTEVILAACRGYIDFALDEPGWFGVCASISDCSVETYVRHTSAGRSNGATDVAERPPMVPEVLRSVLQLPEPLSWAPDVTVDYFEVVLRSTLYGFSMLATTATMRVDDQSRRAGQVLSQLRTWIFHSIQK
>NZ_CP040635.1|WP_138680026.1|989252_990353_+|sugar-kinase
MVGPDPRRWSSLTPMSAESRAGRDPSRLIHTGQALVDAVVEIPAVPRNGGNTMASSYRQYAGGAVNTLVAAARSGGRATHAGAIGQGPNARLIREVLAAQGVEISAPAVPEADSGVCIVLVEPSGERTFITTTGAERIISVGSLATSDPQPGDAVCVTGYSLVMASTRDPLLEWLSGLPAGVDVVLDPGDVMAGLPAAVHERMRALTTVWTGNLEESRALAGLVAPDAGDLTMAQTLEPCARSLPRGTVVITRDGSNGCAVLADGQLSVVPGFPMEAVDTNGAGDVHTGALLAARLSGTARLGRATQVDKTAQASGGAQVGGTAQVNGADWEDAARWANAAAAISVTRRGPDTAPGIDEIRVLLES
>NZ_CP040635.1|WP_138680027.1|990485_990983_+|Cys-tRNA(Pro)-deacylase
MPHSDAASPATKALARAKVKHTLHAYDHDPSNRHYGEEGVAQLGFSADVMFKTLVVHLEGSGVRTPLAVAVVPVSGMLDLKAFAAAMGAKKASMAEPDVAQRATGYIVGGISPLGQKKKLPTCVDSSALDHDVMLVSGGRRGLSVELAPADLIRVIGATTAAIAD
>NZ_CP040635.1|WP_071161730.1|990984_991359_-|hypothetical-protein
MAPGSGPTIPPVLTWASWVAVVLVLGQLVLGILMLNGSWNLIEAHAGLGYAATLAAVLAAISAVVWRRRGGRSGVMAHAISMPILMIIQIGLGESGIKWVHVVLGVIILIGLIGLPMSLRSRRH

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Crispr_ID: NZ_CP040635_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040635_5

1026953-1027048

Orphan

Consensus_repeat	Method
TTCCGCGAGTGAAATGTTCACCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040635_5

>merge|NZ_CP040635|5|1026953-1027048|CRISPRCasFinder
TTCCCCGAGTGAAATGTTCACCCCACCACACGAAGAAGCCCCGCGCGGAACGTCTCCGTCACTCGATACCCGGTTCCCCGAGTGAAATATCCACTC

>NZ_CP040635|5|4|1026953-1027048|CRISPRCasFinder
TTCCCCGAGTGAAATGTTCACCC	CACCACACGAAGAAGCCCCGCGCGGAACGTCTCCGTCACTCGATACCCGG
TTCCCCGAGTGAAATATCCACTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040635.1\|WP_138680042.1\|1021751_1022954_+\|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl\|CDD\|223868
NZ_CP040635.1\|WP_138680041.1\|1018107_1018872_+\|SOS-response-associated-peptidase	unknown	unknown	gnl\|CDD\|376837
NZ_CP040635.1\|WP_138680037.1\|1012398_1013484_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270262
NZ_CP040635.1\|WP_028703230.1\|1030740_1032105_-\|PFL-family-protein	unknown	unknown	gnl\|CDD\|180009
NZ_CP040635.1\|WP_028703226.1\|1038201_1039074_+\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|366370
NZ_CP040635.1\|WP_051238330.1\|1028004_1029330_-\|alpha-L-fucosidase	unknown	unknown	gnl\|CDD\|214829
NZ_CP040635.1\|WP_138680038.1\|1013480_1015079_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224099
NZ_CP040635.1\|WP_138680040.1\|1016520_1017924_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340903
NZ_CP040635.1\|WP_028703231.1\|1029651_1030299_-\|NAD(P)-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224996
NZ_CP040635.1\|WP_028703233.1\|1027057_1027987_-\|DUF5596-domain-containg-protein	unknown	unknown	gnl\|CDD\|375600
NZ_CP040635.1\|WP_097799685.1\|1019428_1020217_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040635.1\|WP_084149381.1\|1020208_1021666_+\|L,D-transpeptidase	unknown	unknown	gnl\|CDD\|380079
NZ_CP040635.1\|WP_138680043.1\|1025679_1026750_+\|adenosine-deaminase	unknown	unknown	gnl\|CDD\|236480
NZ_CP040635.1\|WP_138680045.1\|1036013_1038158_+\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|223839
NZ_CP040635.1\|WP_028703229.1\|1032124_1032394_-\|ACT-domain-containing-protein	unknown	unknown	gnl\|CDD\|178923
NZ_CP040635.1\|WP_138680039.1\|1015071_1016244_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP040635.1\|WP_097799689.1\|1023382_1024666_+\|citrate-synthase	unknown	unknown	gnl\|CDD\|99867
NZ_CP040635.1\|WP_138680846.1\|1033346_1034426_-\|N-acetylmuramic-acid-6-phosphate-etherase	unknown	unknown	gnl\|CDD\|235467
NZ_CP040635.1\|WP_097799983.1\|1032798_1033326_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP040635.1\|WP_138680044.1\|1034692_1035823_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225518

Protein	Function_ID	Function_description	E-value
NZ_CP040635.1\|WP_138680042.1\|1021751_1022954_+\|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	1.41092e-28
NZ_CP040635.1\|WP_138680041.1\|1018107_1018872_+\|SOS-response-associated-peptidase	gnl\|CDD\|376837	pfam02586, SRAP, SOS response associated peptidase (SRAP). The SRAP family functions as a DNA-associated autoproteolytic switch that recruits diverse repair enzymes onto DNA damage. We propose that the human protein Q96FZ2:UniProtKB, the eukaryotic member of the SRAP family, which has been recently shown to bind specifically to DNA with 5-hydroxymethylcytosine, 5-formylcytosine and 5-carboxycytosine, is a sensor for these oxidized bases generated by the TET (tetrahedral aminopeptidase of the M42 family) enzymes from methylcytosine. Hence, its autoproteolytic activity might help it act as a switch that recruits DNA repair enzymes to remove these oxidized methylcytosine species as part of the DNA demethylation pathway downstream of the TET enzymes.	5.46084e-64
NZ_CP040635.1\|WP_138680037.1\|1012398_1013484_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270262	cd13544, PBP2_Fbp_like_1, Substrate binding domain of a putative ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily. The substrate domain of this group shows a high homology to the periplasmic component of ferric iron transporter (Fbp), but its biochemical characterization has not been performed. The periplasmic iron binding protein plays an essential role in the iron uptake pathway of Gram-negative pathogenic bacteria from the Pasteurellaceae and Neisseriaceae families and is critical for survival of these pathogens within the host. After binding iron with high affinity, Fbp interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ferric iron-binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.01593e-102
NZ_CP040635.1\|WP_028703230.1\|1030740_1032105_-\|PFL-family-protein	gnl\|CDD\|180009	PRK05313, PRK05313, hypothetical protein; Provisional.	0
NZ_CP040635.1\|WP_028703226.1\|1038201_1039074_+\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	1.56925e-39
NZ_CP040635.1\|WP_051238330.1\|1028004_1029330_-\|alpha-L-fucosidase	gnl\|CDD\|214829	smart00812, Alpha_L_fucos, Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.	8.84212e-102
NZ_CP040635.1\|WP_138680038.1\|1013480_1015079_+\|iron-ABC-transporter-permease	gnl\|CDD\|224099	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism].	1.60263e-41
NZ_CP040635.1\|WP_138680040.1\|1016520_1017924_+\|MFS-transporter	gnl\|CDD\|340903	cd17345, MFS_GlpT, Glycerol-3-Phosphate Transporter of the Major Facilitator Superfamily of transporters. Glycerol-3-Phosphate Transporter (also called GlpT or G-3-P permease) is responsible for glycerol-3-phosphate uptake. It is part of the Organophosphate:Pi antiporter (OPA) family of integral membrane proteins responsible for the transport of specific organophosphates or sugar phosphates across biological membranes with the simultaneous translocation of inorganic phosphate into the opposite direction. The GlpT group belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	0
NZ_CP040635.1\|WP_028703231.1\|1029651_1030299_-\|NAD(P)-binding-domain-containing-protein	gnl\|CDD\|224996	COG2085, COG2085, Predicted dinucleotide-binding enzymes [General function prediction only].	1.03077e-45
NZ_CP040635.1\|WP_028703233.1\|1027057_1027987_-\|DUF5596-domain-containg-protein	gnl\|CDD\|375600	pfam18164, GNAT_C, GNAT-like C-terminal domain. This is the C-terminal domain found in N-acyltransferase (NAT) proteins present in Actinoplanes teichomyceticus. In this organism, NAT proteins are responsible for N-acylation in the synthesis of the antibiotic teicoplanin. The C-terminal domain undergoes a substantial conformational change upon binding to Acyl-CoA. The C-terminal domain is considered Gcn5-related N-acetyltransferase like (GNAT-like) but differs from the canonical GNAT fold in that it lacks the first beta strand and has an additional four alpha helices.	2.42282e-29
NZ_CP040635.1\|WP_138680039.1\|1015071_1016244_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	1.69885e-92
NZ_CP040635.1\|WP_084149381.1\|1020208_1021666_+\|L,D-transpeptidase	gnl\|CDD\|380079	pfam17964, Big_10, Bacterial Ig domain. This entry represents a bacterial Ig-like domain found associated with transpeptidase domains.	3.33001e-42
NZ_CP040635.1\|WP_138680043.1\|1025679_1026750_+\|adenosine-deaminase	gnl\|CDD\|236480	PRK09358, PRK09358, adenosine deaminase; Provisional.	1.19452e-126
NZ_CP040635.1\|WP_028703229.1\|1032124_1032394_-\|ACT-domain-containing-protein	gnl\|CDD\|178923	PRK00194, PRK00194, ACT domain-containing protein.	3.93624e-38
NZ_CP040635.1\|WP_138680045.1\|1036013_1038158_+\|penicillin-binding-protein	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	1.3355e-46
NZ_CP040635.1\|WP_097799689.1\|1023382_1024666_+\|citrate-synthase	gnl\|CDD\|99867	cd06114, EcCS_like, Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some type II CSs including EcCS are strongly and specifically inhibited by NADH through an allosteric mechanism. Included in this group is an NADH-insensitive type II Acetobacter acetii CS which has retained many of the residues used by EcCS for NADH binding.	0
NZ_CP040635.1\|WP_138680846.1\|1033346_1034426_-\|N-acetylmuramic-acid-6-phosphate-etherase	gnl\|CDD\|235467	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed.	2.21592e-137
NZ_CP040635.1\|WP_097799983.1\|1032798_1033326_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	3.6794e-16
NZ_CP040635.1\|WP_138680044.1\|1034692_1035823_+\|hypothetical-protein	gnl\|CDD\|225518	COG2971, COG2971, Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism].	1.20025e-24

>NZ_CP040635.1|WP_138680043.1|1025679_1026750_+|adenosine-deaminase
MSLSPDLVRMAPKVALHDHLDGGLRPATVLDLSRQKGTQAPGQTEEEIADWFFRTADSGSLPRYLETFDVTVGLMQTAPALTRVAREFVEDMAADHVVYAETRWAPQQHLRAGLTLDQAVAAVQQGLTEGMDAARSAGTPVVARQLITVMRQLDPDPELARLTVSWLGRGVVGMDLAGPEAGFPASRFSDLFDAVRTNGGHLTIHAGEADGLESIQNAIDCGAERLGHGVRLVDDITSYGSGVMSLGPIATDVRGKVITLEVCPSSNIQTGVCRTLADHPIGPLWRAGIPVTISCDNRLMSATSMTRELTLVAEQLDWELADLRQITLAGLEAAFCDEETFEDLDRTVTEQFDDLG
>NZ_CP040635.1|WP_097799689.1|1023382_1024666_+|citrate-synthase
MSETARFIDGDTEFELEKVTASNGQVGYDTAGFLNKTGNLLLDPAFVNTASCSSKITYIDGDKGVLRYRGYPIEQLAKHSSYLETAYLVIYGDLPTTEQLEVFEQRIRRTTLIDERMRDLFRCFPRRSHPMPVLAAGIMALSTFSEKSAGTDPEQVENATDRLIAKTPTLAAFSYKNSVGQPTLYPDNSLSYIENFIRMSFGFPTEPYEFNDEVTRALEVLLILHVDHEQNCSTSTVRMVGSSGANLYSSVAAGVNALSGPKHGGANQAVIEMLQGIRDSGMSTQEFVNKVKDQKSNVKLMGFGHRIYKIYDPRAAIIKEHADNILKLHTGRQDLLEIAQELEETALNDDYFKERKLYPNVDFYSGLIYEAMGFPVNMFTVLFAIGRLPGWIAHYREQMQTNNKIWRPRQLYTGEQERAYRPIELRP
>NZ_CP040635.1|WP_138680042.1|1021751_1022954_+|septal-ring-lytic-transglycosylase-RlpA-family-protein
MRLVASFPRLPELSGSWSPRAPAEVGGHPVIDTHLIVKKVRGTAATLAVAGTLAFGVPAVVGSSALATDTATTRATTAVNVRTGPSTSRPSIAVLYPGDPIVVTGASVGGWTPVRYQGKNAWVASAYLSVGQSGSTSRPTSSSQTGVAYASVALNLRTGPGMSAAVRTVLPGGTRVVLTGNVSGSWVSVSSSQGSGWVNSGYLSQSASSSGSSSSSGSSGSGTATVIGTRYATTSLNLWTASSGARYVGDVDPGTSLAITNRTANGRTQIVIGGSTKWVTSRYLATSAPSSPAANTASSSSGEGQATVTGSCRASFYSDPQETANGETFDPDAYTAANKTLKFNTRLRVTNVANGKSVVVRINDRGPYVSGRCLDLSQAAFSAIASTSAGVIAVNYTVLG
>NZ_CP040635.1|WP_084149381.1|1020208_1021666_+|L,D-transpeptidase
MSHRRSPVGATSLPPGSWGPRVVGGTHPGHRNLPREPLSAPTGVPPGGRCAEHELPWYGVWILGRAPTPPIYPPTHHSLEAFVPSFPTRRSVLACGAVAVPLVLAGCSKNAGSTAGSPAGSSGQGGASAQPSATPTPAQASVVVTSQHPLNQIRPADTLTFTVKNGTLASVAVTNADGESVDGTLAKGVWTPKHPFRLNRNYTAVSTLNGAAGTSKVTTRVTTLDADSNTVNFLYEDMQVGAGMPVIIKFENDVADADKRKAIQEAMTITTSPQQTGAWGWMDNTQLVWRPEKYWQAGTKVSVSGKIAGLPTSSHRFVTDNVSGGFTVDAVRIMYVDIPGHTMKVTKNGATVKTLPITTGKDGFATRSGTKVIIERDSSLIMDSSTVGIPEGSADSYRLDVKWAMRVTYTGEFIHAAPWSQGSQGSANVSHGCVGLSTANAQWLFNFCRAGDIVVNTGSSRNFKPSEGIGCWVYDWAGWQKLSAV
>NZ_CP040635.1|WP_097799685.1|1019428_1020217_-|hypothetical-protein
MTHSPRRGVAACLTVLALVSLSACSSTSPSTPANTSSAIGTAGGSAGSASPSSTASSFAFTVGSGTVAPRDLGERISTAQKSLRSYHQVTSITAGSLEMSLKGDIDRADTDTPRAHAWMTMSGETFEMVVRDSAAWVRQDGKWVKSDMDLSYTSVAANPADPLKALDASTRGSYLGRDSSGHHFSFVLDRKALARWAADRRGASSDYIETLPSGATAHYELWTTDDFLATRSAVTMKAQKTTAVNSTQLSRINQPVTIPEVG
>NZ_CP040635.1|WP_138680041.1|1018107_1018872_+|SOS-response-associated-peptidase
MCGRYGLNVDANDLMRVYQTIGRDIEEWTPRYSVAPSNTVPILIALPGELPAEIPAPQEPAAARTREPAVARALEPAVWGFRPFWAKEGRPRPINARLETVATNGMFRSSFRAHRAIVPMTGYYEWTPGPGRTKIPHWIHADGALLHAAAVTTSGRSEEGEARTVAIVTTTGTDRAGEIHDRMPVFMTADCLDDWLAPGKLEPQEGEELVHLAADQARRVASSLSSYRVSPRVNSVARIDPHDPTLIDPAETLF
>NZ_CP040635.1|WP_138680040.1|1016520_1017924_+|MFS-transporter
MSITEKPLTQKRSWLSAPPPAPRLDEAEVKHRYPRLRLQVFLGIFLGYAGFYLIRNNISLVSAILLDQGRIDKVGIGVIANAVLISYGFSKFFMAMVSDRSNARYFLPLGLFLSALANLAVAFVPAISASVTVFAIVMFINGWFQGMGWPPSGRVLVHWFSTNERGWKTSIWNCAHNVGGMGVGAVSAWGLAITANDWHSAFWLPALVAIVVAIIAFVLIRDTPASVGLPPIEEYRDDPAKVETDTSELETSSYWQVVVQHVFKNKVMLLLAFANVFVYTLRYGVLNWVPTYLSEVHGASVTGGIAGFSLFELAGLVGTLACGWISDHVFGGNRTRTGVTFLIGVGVFLAAYWLAPVGTPYWLLMVFLFFIGAFIYGPVMLIGLQAIDMSAANVAGTSAGFTGLFGYVLGATMASSGVGFLAQHYGWGVTYGALVGGVVVAIVLLALIGPEEKRLIAEHAGKSEHSH
>NZ_CP040635.1|WP_138680039.1|1015071_1016244_+|ABC-transporter-ATP-binding-protein
MREGRVEVQGLSKIFPGMSHPALDEVDLIAEPGQLIDVMGPSGSGKSTLVMILNGLETADRGRVLISGRDMSGVPAAGRPTATVFQQDNLFPDLTVFDNVAYPLRAAHASPVQVADRAEVMLLRLGLAGLEGAHSHELSRGQRRRVALARALVTQPRVLLLDEPLSGLDQALKSVLLDLIDELRRRLGTTVVHVTHEQGLALATSDRIVVLDHGRVAGAGTPRQMYQHPPNSFVAEFMGRSSFLDAAILGPQTPRGPGHDQRARVRVLGVELVVPVAAGVPLVPGRTATLLVRPHCLTIHQLGRAGDGGDAGHRGDGDSATRVGHHAYETAPHGLMGVVQQVRYRGETMEYLIETEQGSLLGTGDLWSEPLARHQRVRLELAADHLWLLA
>NZ_CP040635.1|WP_138680038.1|1013480_1015079_+|iron-ABC-transporter-permease
MTADPLARALRAMTWLCLAVPIAILLRPTLATVVSTAGRTALAGVLIHRFPVVGATLGLATAVGVVGTAAGAMMAAVHHAYRFTGRGFLHWMTLAPVLLPPVTASTTLLQIWGNNGVVAQLTGGDWVSVYGFTGLALADILAMVPLAYLAVLSGLRTLDEGLIDQARDLGLPTRKILRVIVLPHLWPELAAVFLLLVANTAVDVANPLALGGSYQVLATRLREAAIGEGDAVGAAATSSVMLAICVLAWLVMTAISSRTGGAAPQQSSIRTRRRPPSSIWQRVMVGVAWFVAGANALSLPVVMLGSVIDTTSGLSWTASGYRELLAGQNGLALADSVIVAAGATVMAMVAGSAIVSTAGLRRGGSVSTNLLASSALTLPLALGALEIWRRTGTSGNSTSTILVLVMTVQGLVLVPVVVAFLRARTDAMTLPIRQSAAGMGMAPARMLRPLIIPQLRPALTAATALAFAMGLTSVPSVILLTGADTPFIAAQIVTEVEAGRLTEACTLSTVTAITVALVAWGIWLSAGGRRRA
>NZ_CP040635.1|WP_138680037.1|1012398_1013484_+|ABC-transporter-substrate-binding-protein
MSAAADPLGRVGRRDGPARRWRTRLAGLLILITVVGWAVVGVVGNARGSQLSVLCSSIDDICQEWADAFTAETGIRVTMTRRSAGEALTLISQPGHHFDVWHGGPSEAYATGTSRGLFVAYRPRGWSQVPAFARDKEGYWTGTYQGILGFCSDRSVLARNGLPVPMSWQDLLNPRYRGLISAPNPMFSGTGYTMVETQVARLGGEQAGMDWLRRLNSNVLQYTSSGLAPSGVVARGEVATAITFTQHCVKQIEQGHRDLVVSYPREGTGREIGAVAILRGTDHRSAWHLAAARRYEDFILSAKGQELGGRTHSRQLPARADLPSDQRLRLPADRRIVTLPLAEGAQRREHLTEQFREQVLG
>NZ_CP040635.1|WP_028703233.1|1027057_1027987_-|DUF5596-domain-containg-protein
MTRESVAEPLAGVPDELLERLGVGADLLAPTRHLLDAVAADPAAGARTAELAAGFRSRIGHFFGQETLLSETDLAGFGGVEGAVPLAALIVAGPAVEAFWGGLGYPDDIIADTLSDLGRQVRKTVAVTGRFGLGQASWLEMIWRGGFAQLGRLQFEITCSDLGRGGEGAGSLVLSTHIAPIGSLSPDAVAASLGRAHGFFVEHFAELAAEPGAFEVAVCSSWLLDTELMGRMPGSNVDSFARLWTVWDRKISDGSGVFFGFDRPYSDGERVAEIIDELPYDTRLHRTMIDQWRAGGHVHNCWGWLSLVG
>NZ_CP040635.1|WP_051238330.1|1028004_1029330_-|alpha-L-fucosidase
MAQQLGRPEPLDPRFDRSAWWREDRFGMFIHWGAYAVPARGEWVRSYERLSVADYQPAIDAFDPDPDFDAWAATAAAAGMRYVVLTAKHHDGYALFDTALSDYSTVATLGRDFVAEFLAAFRARGIKVGLYFSLLDWARPDFPHHGDLQHPMRDAVEFRDHRPDLASYRAFMHGQVREICSHYGPLDILWFDFSYAGMGPDQWGAAELIRIVRELQPGAVLDNRLEGSGPEPGSILTGDPTPWSGDFTSPEQVIPAEGIRDAAGRPVPWESCLTLNNHWGYCRHDADWKTAPMLIHKLVECVAKGGNMLLNVGPDARGTFPAQSREILAGIGEWMDANADSIRGCGPAGLPKPDWGWWTAGRGRLYAHVMESPIGPLQLQGLRRDQIDDVHLLSDGSQVPVVDAWSVADHPEEAFVSFGPQPEWTYPLPDPVDTVLEVTLR
>NZ_CP040635.1|WP_028703231.1|1029651_1030299_-|NAD(P)-binding-domain-containing-protein
MTTIGLIGAGHIGSQIARKAVQLGYHVVLSNRRGPEVLRGLIQELGDHARAASPAEAAEAADLAVVTIPLKAIGSVPIEPLIGKIVIDTNNYYPQRDGQITALDEETTTTAQMLQEHLPESFVVKAFNHIPAADITTAGRPAGDPDRRALAVASDHDAALLVVSRLLDRFGFDPVPIQPLSESWRIQRDTPGYVQPLTAPQLVHALALAKRYRDM
>NZ_CP040635.1|WP_028703230.1|1030740_1032105_-|PFL-family-protein
MDTATTKNILETIHMIEDERLDIRTVTMGISLLDCIDSDGEVARRKIYDRITTRARDLVQTCQGIETELGIPIINKRITVTPISLIAAASGEHDYVPFARTLDAAAKEVGVDFLGGFTALVDKGRTHSDKVLVDSIPQALAETDYVCSSVNIGSSRAGINMSAVADMGRAIKRSAELTADAGGLGAAKLVVFANAVGDNPFMAGGFHGVGEADCCVSVGVSGPGVIARALKKVPGGSFGTVAETIKKAAFKVTRMGQLVGTMAAARLGVPFGIVDLSLAPTPAVGDSVARILEEMGLERVGTHGTTAALFLLNDAVKKGGMMACSHVGGLSGSFIPVSEDIGMIEAAGLGAISLDKLEAMTAICSVGLDMIALPGSTSAETLSAIIADEAAIGVMNHKTTAVRLIPVPGKEVGEEAEFGGLLGRAPIMATSRFGSDEFIARGGHIPAPIHAFRN
>NZ_CP040635.1|WP_028703229.1|1032124_1032394_-|ACT-domain-containing-protein
MNAIMTVTGNDHPGIIAAISTALAEMGVNIVNVSQTLMGDYFTMIMQCVLGDGTPDLATIQARMKDAGEQAGVVVHIQSEAIFDAMHRL
>NZ_CP040635.1|WP_097799983.1|1032798_1033326_-|GNAT-family-N-acetyltransferase
MIPQVDVIPLVEDDLIWLWHWNVEAVDPEWKKWDGPYFGDQDDRSYSEFAHDWRPRVRSGDRAIITVEGHRCGFVNRFEIEPAGGGWWELGLVIFEPRLWGQGIGRRALSSWTRQTFQETDAHVLTLTTWSGNTRMMRCAEQLGYTVSARIPEARSWNGRRWDSITMSLLRNQIA
>NZ_CP040635.1|WP_138680846.1|1033346_1034426_-|N-acetylmuramic-acid-6-phosphate-etherase
MAAESSPRLTWATESRNRRTLDIDQLDAAGVVSEILAEDARVAAAVQACIAQIGRVVDLVVAALSAGGSVHYVGAGTSGRLGVLDAVELLPTYGIRPDQVIGHMAGGERAFVRAVEGAEDSPELGAAELAQAGPHDLVIGIAASGRTPYVGGALAEARRRGLPTALISTNPNAPLADLADISILPDTGPEAVTGSTRMKSGTAQKMTLNAISTAAMIRLGKTWSNLMIDVVATNEKLRVRMVRIVEQATEADAGRARAALEAADGRVRVAIVALAAGVDVAEAEAALEETPPSAERAGDPSGVRTAIDRARSASGGSGTTGGAVDSGSAGGAAGTGSTGGVAPAGDDSGSVRGIGRDQR
>NZ_CP040635.1|WP_138680044.1|1034692_1035823_+|hypothetical-protein
MTVMGIDLGGTSTRAELVDGSGALLGRGLAGGANLRSAGGGIAGAADAVRTAAEMALAAAQNPGTAGPGDVPRNSPHDVAHCAPHDVAPRIALGRHRPRVVVVAASGAGPARHDEVAEAFRDALTGICDRVHVENDLAAAFRSASSGGDGYLLLSGTGAVAGRFQGGVLQRRADGLGWILGDTGSGLWIGWQGLRAAAADLDGRGPRTELTGLLVTALGVSPVTGDPCQDLVRRVDDLTPAQIGSMAPIVLRVAGHDAVAGRIAEQAGRALVTSLDAVIDDAGTDGVVIDHARTVGVGGLDETAVSPDAETTGMPKKCAGGVPHEVVLAGGVLSHPNPVRDAVLAALEDRSWRVVTATEPVIGAVRIAQDLLAKGL
>NZ_CP040635.1|WP_138680045.1|1036013_1038158_+|penicillin-binding-protein
MCRPDDIGGRVRMEIGLSALGSLFGGAVRMIRVGQCRSSGPRRAVLFRWSKPDTTYRGIGTREESRMTPQGPRLSRRALGGAAVGTLAAAALVTVSGCKGFDSTSDVPDDARQTAQKLAAGLTRGDLTGVPVDDPATAASDLKVVFAGMDGLRPTTKVSSVAGAGSGTVTATLSHTLSLAGKPWTFTSTARIVSSGGAWRVAWEPTVIHPRLTQATRLRHTRQLGERASITGTNGSDIIVNHTVHDVGIDKTKIDKTKWAGSATALAKELKIDPKAFTALVQASGPQAFVVAITLREQDIPRNIGVIPGAAVTDRELPLAPTKTFALGLLGTSGLADEADVKRGKGEIEEGDVVGKSGLQLRYDAQLRGKVGHIIALVARKDPTSSASPAPQPATSASGSTSSGPTTLFTTPKSDGKPLRLTLDPTLQSKAETALARVSGVACLVAIRPSDGAILAAANSKDAGANAFATSGQYAPGSTFKIATTLALLRTGLTPDSTVTCSPTITVNGRRFHNYSDYDSAYSGAIPLKQAVAQSCNTAFISQHTKVTSASLRRAAGSLGVGTDYDPGFTSFYGSIADTTTADVLASDVIGQGGVLASPMAMAGLAASVAAGSTVVPWLIEGRRPASKATPLSTKEVAGLREVMVTTVKQGSGRVLSGLATGAKTGTAEFGPSGKLKTHAWMICWTSSIAVACMVEVGESGSGTAGPIIKAFLT
>NZ_CP040635.1|WP_028703226.1|1038201_1039074_+|mechanosensitive-ion-channel-family-protein
MRTSIVKSFTWNWPYTPINLAIITVAALVCRWLLRKGINWLIGWMLRRTEKRRSSETTHGGIAIGELTGLNAERQAQRTTTVGRLLSNIGVALIVAIAVMWGFDTVGIQLTPILASAGVAGIALAFGAQTLVKDLLSGLFLIFEDQYGVGDVVEINDIKGTIEDIGLRVTRIRDFDGLIWYIRNGEITTVGNRTQGVATTLTDITVHASEDPLVVMRVLKMVIREVDQDPQFSDSLLETPTVLGVTDITGDQMTFQISTKCVAQTQYDVIRTIRRKVKDAFDEARIRGAF

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Crispr_ID: NZ_CP040635_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040635_6

1209501-1209601

Orphan

Consensus_repeat	Method
CGGCACGGATGCAGCCAAACCGCACAGAGGCAGCCAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040635_6

>merge|NZ_CP040635|6|1209501-1209601|CRISPRCasFinder
CGGCACGGATGCAGCCAAACCGCACAGAGGCAGCCAAACCGCCGAGCGGGGCCGGTCCAGCGGCGGCACGGATGCAGCCAAACCGCACAGAGGCAGCCAAA

>NZ_CP040635|6|5|1209501-1209601|CRISPRCasFinder
CGGCACGGATGCAGCCAAACCGCACAGAGGCAGCCAAA	CCGCCGAGCGGGGCCGGTCCAGCGG
CGGCACGGATGCAGCCAAACCGCACAGAGGCAGCCAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040635.1\|WP_097798106.1\|1207951_1209433_+\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143404
NZ_CP040635.1\|WP_036980342.1\|1203329_1203557_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040635.1\|WP_138680864.1\|1212474_1213359_+\|fructose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|180045
NZ_CP040635.1\|WP_051238006.1\|1219425_1219941_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378822
NZ_CP040635.1\|WP_138680862.1\|1203610_1203922_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040635.1\|WP_138680861.1\|1202315_1203218_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040635.1\|WP_028702016.1\|1217278_1218976_+\|formate--tetrahydrofolate-ligase	unknown	unknown	gnl\|CDD\|376511
NZ_CP040635.1\|WP_138680122.1\|1211126_1212446_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP040635.1\|WP_138680859.1\|1198087_1198612_+\|flagellar-biosynthesis-protein-FlgA	unknown	unknown	unknown
NZ_CP040635.1\|WP_138680123.1\|1213437_1214052_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP040635.1\|WP_138680860.1\|1199720_1201322_+\|CpaF-family-protein	unknown	unknown	gnl\|CDD\|227297
NZ_CP040635.1\|WP_138680120.1\|1201312_1202263_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366122
NZ_CP040635.1\|WP_138680124.1\|1214067_1215426_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP040635.1\|WP_138680126.1\|1216135_1217128_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP040635.1\|WP_138680858.1\|1197128_1197701_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040635.1\|WP_138680863.1\|1203939_1204407_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227296
NZ_CP040635.1\|WP_138680121.1\|1204403_1207727_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|198111
NZ_CP040635.1\|WP_138680125.1\|1215362_1216139_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP040635.1\|WP_028702017.1\|1219005_1219401_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040635.1\|WP_028702012.1\|1209774_1210746_-\|ketopantoate-reductase-family-protein	unknown	unknown	gnl\|CDD\|224805

Protein	Function_ID	Function_description	E-value
NZ_CP040635.1\|WP_097798106.1\|1207951_1209433_+\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
NZ_CP040635.1\|WP_138680864.1\|1212474_1213359_+\|fructose-bisphosphate-aldolase	gnl\|CDD\|180045	PRK05377, PRK05377, fructose-1,6-bisphosphate aldolase; Reviewed.	4.37674e-174
NZ_CP040635.1\|WP_051238006.1\|1219425_1219941_-\|hypothetical-protein	gnl\|CDD\|378822	pfam12158, DUF3592, Protein of unknown function (DUF3592). This family of proteins is functionally uncharacterized.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.	0.00541136
NZ_CP040635.1\|WP_028702016.1\|1217278_1218976_+\|formate--tetrahydrofolate-ligase	gnl\|CDD\|376511	pfam01268, FTHFS, Formate--tetrahydrofolate ligase.	0
NZ_CP040635.1\|WP_138680124.1\|1214067_1215426_-\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.14488e-37
NZ_CP040635.1\|WP_138680126.1\|1216135_1217128_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.31514e-77
NZ_CP040635.1\|WP_138680123.1\|1213437_1214052_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	4.62258e-59
NZ_CP040635.1\|WP_138680860.1\|1199720_1201322_+\|CpaF-family-protein	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	1.15043e-46
NZ_CP040635.1\|WP_138680120.1\|1201312_1202263_+\|hypothetical-protein	gnl\|CDD\|366122	pfam00482, T2SSF, Type II secretion system (T2SS), protein F. The original family covered both the regions found by the current model. The splitting of the family has allowed the related FlaJ_arch (archaeal FlaJ family) to be merged with it. Proteins with this domain in form a platform for the machiney of the Type II secretion system, as well as the Type 4 pili and the archaeal flagella. This domain seems to show some similarity to PF00664 but this may just be due to similarities in the TM helices (personal obs: C Yeats).	0.000924574
NZ_CP040635.1\|WP_138680122.1\|1211126_1212446_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.52516e-26
NZ_CP040635.1\|WP_138680863.1\|1203939_1204407_+\|hypothetical-protein	gnl\|CDD\|227296	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion].	0.00213472
NZ_CP040635.1\|WP_138680121.1\|1204403_1207727_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|198111	smart01043, BTAD, Bacterial transcriptional activator domain. Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.	2.67817e-11
NZ_CP040635.1\|WP_138680125.1\|1215362_1216139_-\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	8.83406e-07
NZ_CP040635.1\|WP_028702012.1\|1209774_1210746_-\|ketopantoate-reductase-family-protein	gnl\|CDD\|224805	COG1893, ApbA, Ketopantoate reductase [Coenzyme metabolism].	3.91003e-61

>NZ_CP040635.1|WP_097798106.1|1207951_1209433_+|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase
MSSAESSSVKTIKNFIGGEWVESTSTESIDVPNPSTGEIIARVPLATREETAAAIENAAEAFKTWGKTSVIKRAKILFALQQLLERDKDELGTIITMENGKPHAEAVAEVGRGIENVMHAASIPNLLMGDSLSTVATDVEVTNYRYPIGVTSAICPFNFPMMVPFWMFPMAIACGNTMVLKPSEKTPNLMNKIIDLTVEAGLPAGVLNVVQGAKDVVNELLENPTVKSVSFVGSEGVGRYVYEHGTAHFKRVQALTGAKNHSIVLSDADIDDAVTKSLSGGFGSAGERCMAGSVILVEDAVADEFVAKFTQAAKDIDMGDTNEEDYYLGPVIRKENQERTFKYIEDGVKDGAKLVLDGREGVPEGGYFCRPTIFERVSQEMSIWKDEIFAPVVDIIRVKDLPEAVDFANSHHLANGACLFTDSATAVRYFRENIDAGMLGINLGVPAPVAYFSFSGWKDSFFGDLHANGKDSVEFYTHRKVVTAQYKQGRYNK
>NZ_CP040635.1|WP_138680121.1|1204403_1207727_+|LysM-peptidoglycan-binding-domain-containing-protein
MSTSGHLRKDVGRVLRGLASTALLVALVLGSPAALTVWGRIGELRGLSLARLTAPDDGSVLLGLATLVGWAAWLVFTVCVLVEAVDLASGSRVRMRVPGLGQVQGLAAGLLVASIALIAPVGPATSTGQPAAISRTLPVDDSPAQDRTAGSENTSGTASGRTWDRSSEALSVGTSGTASEEVVQRASMGRSDSRLAQPAGHSSESRAGVWHRVTVQDSMWSLAEHWYGDGTAWRRIVAGNPGLDPANLPVGQIILIPGVQAGTTPAQTRSAPTPDPSGAAPASPPTARPARALPATGDRQGPTIVVVAGDTLSGLAQTHLGDADRWPEIWSLNRDQISDPDLIDIGWRLRIPAVTAPAKQSPPSKDAGDAGGTPSPAPSSAAPDDAAPNSTDSGDAGPETSRDADTDAAGTDAADAPSRAAAPDAGSADPEAGTGGGEASTGPTGSAQSIPGVPSSAESGDHDGVSVSPIRGTLAGLSLFLAGGIAGALVTGRRRQLFSRPVGRRVPVLGEDAAHLRAALDTAADAEPEALPDPDPGDDPASSGSHEMTPGTVVLGTRSPDAQRADGGIDADEPVLVDLAATSGWFGVAGSPEDARAMVAGIALSLTCTWWSEGLEVVACGDSLSWLARTGSEAVTIVDHDEALEDLSDLVSSHHPVGPQQPVLERVLVMDVAPVGLPDPRLIRSFGTVIVSPVPGDSAELEGEDLVRVHADGSATLGDLRFTAQLVGEPVRRGVLDLVATTSRTDTEPARWWNGDDPDAATGRPESQDPADQTPHPDQLPQAPPGPHQVGPPPWSPSEQGPPGPDPDEPDPPESGPPSSGQTLFSPSHSHTDAPHQSTISTIGEVTVSHRSDVPDPDQGETGTPATPMLRLLGPVDLIGARGPEPARSVRQCVEYCAWILDHPGSGSARMREGLMVAEPTRRSNTSRLRRWLGRDDEGRLYLPDAYDGRIRLNEAVGTDWERLQLLISGGIAAAADRNLRAALDLVRGAPLADAAPGQWHWAEEWRVEMMQTVRDIGIELARRAIDSGDLDTARLALARALVCCPEDEELLVCRIRLADLAGERSEVERLVYLLSRRARKLGVDLSEETVVLLQEVMEGRPRARVV
>NZ_CP040635.1|WP_138680863.1|1203939_1204407_+|hypothetical-protein
MTTLVSPASRTLARRPAADRQRGAVSLEVALLVPALLILAALTAASWRVHQARGDAQSAAETAARAVSVAAGPASGLASGTAIARAELAGTRCREASVSINPSGLGVPVGESGTVSARIGCTVAMSDLLVPGLPGSIHISAQASAPVDSHRERGS
>NZ_CP040635.1|WP_138680862.1|1203610_1203922_+|hypothetical-protein
MWPVVILAVIGIVQAAVIMQARSAVTEAARAAVRAEALVGSRPGDALSAARQVASPSGVREISVRISEGDGLLRAEVTGRAPFFLDAGSVHLSAGAVAVREGT
>NZ_CP040635.1|WP_036980342.1|1203329_1203557_+|hypothetical-protein
MSSPQSSLPRLRSQRARLMAVLMPILAGLWPAPRRTGERGLSQSTENAILLVGAVAVATIVITAVTRYVQSNLPG
>NZ_CP040635.1|WP_138680861.1|1202315_1203218_+|hypothetical-protein
MAMPSLMLALVAGSALACAPLLIWAGRRPAPVRLSDGLAHLSGEDPGEPVVDLPADAGRLDRFGAWLATRRIGAVPERTRRVLSLQGRSVGDLLVEKSVWALGGLMVPLIAQVSAQLMGMALPVTPVLLSLVLGVGGWFLPDLRLRSEQKAVHQDAAEAVLTFVDLVTLSRLANQSASRAVLEASQISDHPVMVRIRTSLERSRLEQQAPWAGLQRLSRELDLPGLGDLVEVLTLDDQGASLVATLRARAAEMRDAHLTQEKLAAHQVSESMTVWMVVPVLVLGLVLLTPPLLSLSGVAP
>NZ_CP040635.1|WP_138680120.1|1201312_1202263_+|hypothetical-protein
MGMNAFGAALLAAMITGGMAMVLIGAIPRPRKLSTGMSTGLWTRVDKSWRTAPRAAGIRWITGVAGGVVCYLITGWPIGLILVPAVLIGLPPLLADPPETELEKLRGLERWVRLVAGSATTGKSVVDAIRATRGQAPEVLAEPLAALVSRLDSRWGPRPALQRFADDLDSADADQVVAAVVIAAERGGTGASATLGALAGSLQERARAMREIATERAKPRIVVRQVTAVIGVVLGAAIIVGRDFFAPYSSLLGQLLLCLYAAAYAGALVVLARRSRPRHRERILVRAAVGPAPRSLGGRGSGPHGGPGHTEEVGDA
>NZ_CP040635.1|WP_138680860.1|1199720_1201322_+|CpaF-family-protein
MAIGTPEAARTTLPHDPLSPLPDPLPGDSLSTRRSSTDGEDRGARRLSPSDVSTLPVTSGTPGWTRRRPALTGTAAGGDDGVDWGLVVRLRREASERISRERADHRERFGTDLEAEDLRLLGDAVIRQVVHDHAERLTTTGEALWSLEIEMRHVRVVADAIFGYGRLQPLFEIPDAENIEINGCDRVLVQFPDGHRETQPPVADSDQELVEAIRFLGESASPPRPFDDAHPTVTVALGDRYRLHAIGFGLAHRPSIVIRHHTLTEITLDDLAAGGMMPRQVAVLLRAAVRARRSIVISGDQGAGKTTLLRALVDAIPPTERFGTLETDYELLTHLHAEQRNMIALQATVGLGEQVDGRTLGEYTVADLVPEALRQNLSRLVIGEVRGSEAGAMFEAMQTGAGTLSTTHSHSASSTMDRLAARVAQGGVLTMEEAYRQIAHNITLLVHVVLVDDTWRQGTRRRFISEIRQLTGAVEEGRPITHLTYSAPGLRGSQGSPGGIGGTVGVGSAAVFHPDPELLAELAVVEPEIGGWA
>NZ_CP040635.1|WP_138680859.1|1198087_1198612_+|flagellar-biosynthesis-protein-FlgA
MTRDVARGEELRHGDIAVASISVPDQVDTLPASRLDSLIGRRAVVDLPRGSLPGSRSVGDLPVAAGRAHVGLKLAAGRVPTEPMPAGTRITIVEVTGDATSAETGSPSGQSSPAAGGPSTGTVPRTIDAVVSRAPVRAEDRSSWLLDVEVLQADAAVIADLAARDRVAVIVRGS
>NZ_CP040635.1|WP_138680858.1|1197128_1197701_+|hypothetical-protein
MAATPSPTVSHDGLWVDADWALPVTSTGTRLGEVSDKRIRITVYQVATAPSPHNSVMVDPADGRPVIAKGDRIVLLRYVVTNISSDPISLGIGTVSITTRYPDWPWAQGLTGVRAPALMARYKLSTTPFSEGTARPPYVLAPGASFMVGQNAPYERAELLQISAAVVVSDDSGSEDASLSWTLQGTVHLL
>NZ_CP040635.1|WP_028702012.1|1209774_1210746_-|ketopantoate-reductase-family-protein
MKYTVIGAGAMGYRYGVLLQEVAGLDVDFIDTWQPNLDAVHRQGGVYVSRDHENRHLVPIKMFTPEEYTGSPDVWIVFVKQMQLDEVLSRCAHLFRPEQYMFTAMNGMGHIDKMRKYFSDDRLVAGTALVATVLNGPGDVDFIGAPGAGTMHMVNCTEEPDDTTLAMEQDFKTAHLNPELTRNLYGTLMAKVIFNSVVNTLCTMFSAQMGQFASYEQSDEVTRILVDEAYDACERAGIQLINTRQEEVDSVRYVSTVGNPLHYPSMYQDFSKGRPTEVDFINGYIAKLGREHGYVCHVHEFVTQQMHLAEAIRDAKARDAAKA
>NZ_CP040635.1|WP_138680122.1|1211126_1212446_-|MFS-transporter
MAFNEGLRRLWRLPRFRRILGVRVSTQAADGTLQVGLASYVLLSPEQQPDAWSIAMVLAITMLPFSVIGPFVSLALDRWPRQRILVGTDGLRCLIALMVGVLVWGGARQNPAHISLLLLLLVAMSLNRFLLAALTAGLEHTIDRREYLTASSIMPVIGPLGMMIGVVIAAAVRVIGGHWMPVHHADTVIFCISAVLFALSALLGTRFGRDELGPTAPDTSRTASQILHGIVDGFRHLRQLPHVSAGLGLIGAQRLLFGVYSVAMMLGFRNYFHAKAEVNAAMGDMAVWGVVMGAGFVLSAAFMPRVVRILGMRASLIGLLVATAVVQVLPGAMLNRWSLIVASFFIGLFAQSLKAGVDTVCQAHIDDAYKGRVFIVYDMIYNAMFVGGAALAALVLPVHGLSHPRLIGLAVAYLLVAGLFAMITSRHGSSLYDRGTGRA
>NZ_CP040635.1|WP_138680864.1|1212474_1213359_+|fructose-bisphosphate-aldolase
MPPGEGLEHTDPRRGDGRGRAGCSTPKALHLYGIEKDRYVDDEEMFDLVHAMRTRIVTSPAFSGEQILAAILFEQTMGRQFAGRPAADYLWETKNVVPFLKVDKGLAEPADGVREMNPIPGLAGLLERAVGAHIFGTKMRSVIDEANPRGIDAIVAQQFELGHQICEAGLVPILEPEVTVTAQDKSRSEALLLEQITRRLDSDPFPGPVMFKLSIPTVDDLYAPLIANPAVLRVVALSGGYSRDEADALLARNHGLIASFSRALSEGLSDSQTDEQFNATLAASIDAIYHASLT
>NZ_CP040635.1|WP_138680123.1|1213437_1214052_-|response-regulator-transcription-factor
MITVLLADDQAMVRGAMAALLELEGDIRVVAQVGRGDEVVAQTLRTRPDVILMDVEMPGLDGLAATAQVLEAVPTVKVLVVTTFGRPGFLRRAVDSGAHGFIVKDAPAAQLAEAVRRVHAGLRVVDPQLAADSLMFGESPLTRREAEVLEAGADGATVQVIAGRMHLSEGTVRNHLSAAMAKTAAGTRAEAILIATERGWIVGP
>NZ_CP040635.1|WP_138680124.1|1214067_1215426_-|sensor-histidine-kinase
MAGRLRLRCGMADEPRHRSGLIPGPWPVVRLPGEGTMTGRGMVEQTGATMTGTGRSRTIGGLRLPPGGRSPRGLVWFLFWFLCLPSVVESALAVGGARCWIALTATVIALCAFTVGCWYSVGWLRETGEVPAGQIWPWLSILLAGGAVVISTLGSGGLALLVYPVILIGLDFSWRVTAAIGLLLALVLYLSLRIWTRFPDLQGWAFAVLSGGTGAAFGRIGAQRRHQRELLQRREHELEIADTRNQMARDLHDLLGHSLTAISVKAELAERLIDVDPLRARAELSDVRSLTRSALAEVRATVNDYRDVSLAAEIGRAHQMLDAAQIRHELPGAIDQVPEDLRTLFAWALREGVTNVVRHSGARHCRVELSATSITVTDDGDGVASSSGDSSGGNGIAGLRQRAAEAAAVVRTGPAPEGTPARPGFRLVVGRPEAMESAPGRPHSKDRARETA
>NZ_CP040635.1|WP_138680125.1|1215362_1216139_-|ABC-transporter-permease
MTAIGSTARSVPPFGGLNPTLLRVELLRVVRNRRTMILALLLPVVLFWMVGSDRYNHIPYGHGTVAGMVMIGIGLYGAIISTTGAGTAVSMERAAGWSRQLRLTPLTPVAYVLVKGVVGMLVGALSIAAVCVTAVIKGLDQPLHIRILSGLLAWLGSGLFSAFGVFMGYLLPTDSAMQVTNLSVVMVAFLSGMFVPVDPSSVLGHIARVAPMWGIHQLALVPFGAGGFGIGEAVNIIGWLAAFVSGAAWLMSRDTARV
>NZ_CP040635.1|WP_138680126.1|1216135_1217128_-|ABC-transporter-ATP-binding-protein
MSSSPAVHLADLHKSFRGRQGHCVTAVDGLSLDIRPGEVVALLGPNGAGKTTTIDMILGLANPSGGAVEVFGRPPRDAVAHGLVAAVMQTGGLLPDLTVRETVEITASLFSHSVRVAEAVERAGLESLASRQVRKCSGGEKQRIRFAMALVCDPALMILDEPTTGMDVEARRSFWQSIHADAALGRTVLFATHYLEEADEFADRIILMRSGRIVADGTGAQIRAMVSGRTLRATLKPGIDRGKVLGILGGLDLQAVEVLGSALTVVADDTDPVALALLREGAAADLDISSRGLEDAFIALTSSTGTTGAIGSGTTAGAPPLAHSHQKVLA
>NZ_CP040635.1|WP_028702016.1|1217278_1218976_+|formate--tetrahydrofolate-ligase
MAMPTDLEIARAAHLDPIGEVAARAGIDDEFLELYGRDVAKVSLDAIAANRDRPRAKYIVVTAITPTPLGEGKTTTAVGIAQGLAAIGKRSMLALRQPSMGPTFGIKGGAAGAGYSQVLPMEKLNLHLTGDFHAITAAHNLLAAMIDNHLHHGNALDIEPHSISWRRVVDINDRALRNVIVGLGSRIDGVPRQSGFDITAASEVGVILSLATSLHDLRERLGRIVIGYNRDKEPVTAENLHAAGSMAVILKDALKPNLLQTTENTPVLVHTGPFGNIATGNSSVVADMVGIGCADYLLTEAGFGSDMGAERFFNIKCRVSGLHPDAAVMVATVRALKVHSGRYTVKPGRPLPSGMLLDNPDDVWAGAPNLRRHIEIVRSFGVTPVVALNVFPTDHADEIDAVRQIAEECGAHFAASTHVVDGGAGAADLARAVVAACEEPARFRYTYRLEAPLADKIEAIATRVYGADGIDLSPAAARELAHFEDLGYGHFPVVMAKTHLSLSHDPALKGAPTGWRLPVREVRAAAGAGYVYTICGDMRTMPGLASHPAAERIDIDADGNTVGLF
>NZ_CP040635.1|WP_028702017.1|1219005_1219401_+|hypothetical-protein
MASQRADDARRRIELEEQDRRREGAAAQVLIDGFVVAARDRGIATEPLIAQLLDGHTARTDRHGWYLNASHSLAIGENGEYFQLVVAGGFRERLRGVRLETSLPPLHVGRGGRDGETGYLKEFLAWRLAAG
>NZ_CP040635.1|WP_051238006.1|1219425_1219941_-|hypothetical-protein
MTKWRSVLAVLGVVYLLTVSCLFFILGHRYDMFQRHGDTVQGTVVGFRHAPSVGSGPLHLVSQPSGDRLAVIEYQRDGRTRTVTSNPYTRASSYTLGQKVTLVLDRSQDGDINSEVVAVKDHNQTRLKMMPYVFLAVALGLAWYLGISHPGILRRRRARAALPGGTAPGTP

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Crispr_ID: NZ_CP040635_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040635_7

1556814-1556898

Orphan

Consensus_repeat	Method
CCGCATCCCAGCCGACACCGGCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040635_7

>merge|NZ_CP040635|7|1556814-1556898|CRISPRCasFinder
CCGCATCCCAGCCGACACCGGCACCGGCCGAGCCGGCAGCACCGGCAGCACCGGTCATTTCCGTATCCCAGCCGACACCGGCACC

>NZ_CP040635|7|6|1556814-1556898|CRISPRCasFinder
CCGCATCCCAGCCGACACCGGCACC	GGCCGAGCCGGCAGCACCGGCAGCACCGGTCATTT
CCGTATCCCAGCCGACACCGGCACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040635.1\|WP_028702149.1\|1563162_1564002_+\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NZ_CP040635.1\|WP_138680281.1\|1546812_1548129_-\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|234607
NZ_CP040635.1\|WP_138680885.1\|1545891_1546662_-\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
NZ_CP040635.1\|WP_028702154.1\|1558244_1558622_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040635.1\|WP_126412760.1\|1566194_1567238_+\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845
NZ_CP040635.1\|WP_097798317.1\|1550031_1551078_-\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NZ_CP040635.1\|WP_138680286.1\|1559650_1560745_-\|DNA-integrity-scanning-protein-DisA	unknown	unknown	gnl\|CDD\|237395
NZ_CP040635.1\|WP_028702153.1\|1558663_1558891_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226181
NZ_CP040635.1\|WP_138680888.1\|1565079_1566063_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP040635.1\|WP_138680282.1\|1548266_1549277_-\|porphobilinogen-synthase	unknown	unknown	gnl\|CDD\|236450
NZ_CP040635.1\|WP_036980516.1\|1560770_1562189_-\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994
NZ_CP040635.1\|WP_028702148.1\|1564030_1564945_+\|proline-dehydrogenase	unknown	unknown	gnl\|CDD\|223580
NZ_CP040635.1\|WP_097798318.1\|1551235_1552636_-\|NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|237009
NZ_CP040635.1\|WP_138680280.1\|1544224_1545673_-\|catalase	unknown	unknown	gnl\|CDD\|365942
NZ_CP040635.1\|WP_084149189.1\|1543095_1544121_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP040635.1\|WP_138680886.1\|1549273_1550026_-\|uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|119440
NZ_CP040635.1\|WP_138680283.1\|1554074_1555559_+\|glutamyl-tRNA-reductase	unknown	unknown	gnl\|CDD\|234592
NZ_CP040635.1\|WP_138680285.1\|1558892_1559537_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040635.1\|WP_138680887.1\|1552715_1553855_-\|uroporphyrinogen-decarboxylase	unknown	unknown	gnl\|CDD\|238368
NZ_CP040635.1\|WP_028702150.1\|1562362_1563001_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|379203

Protein	Function_ID	Function_description	E-value
NZ_CP040635.1\|WP_138680281.1\|1546812_1548129_-\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|234607	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase.	0
NZ_CP040635.1\|WP_138680885.1\|1545891_1546662_-\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	7.03368e-70
NZ_CP040635.1\|WP_138680286.1\|1559650_1560745_-\|DNA-integrity-scanning-protein-DisA	gnl\|CDD\|237395	PRK13482, PRK13482, DNA integrity scanning protein DisA; Provisional.	1.84518e-147
NZ_CP040635.1\|WP_126412760.1\|1566194_1567238_+\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	0
NZ_CP040635.1\|WP_097798317.1\|1550031_1551078_-\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	5.31487e-125
NZ_CP040635.1\|WP_028702153.1\|1558663_1558891_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|226181	COG3655, COG3655, Predicted transcriptional regulator [Transcription].	1.1062e-22
NZ_CP040635.1\|WP_138680888.1\|1565079_1566063_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	2.66266e-14
NZ_CP040635.1\|WP_138680282.1\|1548266_1549277_-\|porphobilinogen-synthase	gnl\|CDD\|236450	PRK09283, PRK09283, porphobilinogen synthase.	0
NZ_CP040635.1\|WP_028702149.1\|1563162_1564002_+\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	6.48483e-19
NZ_CP040635.1\|WP_028702148.1\|1564030_1564945_+\|proline-dehydrogenase	gnl\|CDD\|223580	COG0506, PutA, Proline dehydrogenase [Amino acid transport and metabolism].	3.44789e-24
NZ_CP040635.1\|WP_097798318.1\|1551235_1552636_-\|NAD(P)-binding-protein	gnl\|CDD\|237009	PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed.	1.52394e-47
NZ_CP040635.1\|WP_138680280.1\|1544224_1545673_-\|catalase	gnl\|CDD\|365942	pfam00199, Catalase, Catalase.	0
NZ_CP040635.1\|WP_084149189.1\|1543095_1544121_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.27512e-65
NZ_CP040635.1\|WP_138680886.1\|1549273_1550026_-\|uroporphyrinogen-III-synthase	gnl\|CDD\|119440	cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.	2.38914e-39
NZ_CP040635.1\|WP_138680283.1\|1554074_1555559_+\|glutamyl-tRNA-reductase	gnl\|CDD\|234592	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.	1.20539e-64
NZ_CP040635.1\|WP_036980516.1\|1560770_1562189_-\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
NZ_CP040635.1\|WP_138680887.1\|1552715_1553855_-\|uroporphyrinogen-decarboxylase	gnl\|CDD\|238368	cd00717, URO-D, Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).	2.03443e-153
NZ_CP040635.1\|WP_028702150.1\|1562362_1563001_-\|VOC-family-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	1.0999e-30

>NZ_CP040635.1|WP_138680283.1|1554074_1555559_+|glutamyl-tRNA-reductase
MLQCGVVGLCIVCVDHAEQGLGAVSTAAAQVDGLGLALTDSPQIRGAVVLSTCNRVMVLAETATEVCRPGPTLCGLLADHGATVLAQESSVLEGGDAVWRLFRIASGLESMVTGEREIAGQLKRALRFARTQSTVTPLIGHLVEEALRTSRKVATQTRLSAQGRTVVAVGFDLVSQTLDFSGARVLVMGTGSYAGATCAQLRDRGVAEILVHSTSGRAQGFARRHEVTAVDDDRLAPVLAGVDLVVTCRGSGVPALTRQVAARAVEDRAAVAGVDRDLVVLDLAVSGDVEQPVPAGLRVIDLAAIRDAVPASAAAERGEAERIVAEGVHDLAMDLERRRLAPAVVALRDTLSDLVQAELDRLPEDGSIPVDAAAQALRRLAASMAHIPSVRARIASEHGLGDRWLNSLSDVLGIDVEVDEHILDLGGLGLGAMASGDTLTCPVTGLSVSDLAPAEDRGQHGVHPMAHDDPHQLRAVQGHRPEDVAHLVTIEETR
>NZ_CP040635.1|WP_138680887.1|1552715_1553855_-|uroporphyrinogen-decarboxylase
MSGGADTASADSPGAVSGGADTGRPAAPAGESPVAQPAILAAMTGHRTEHPPIWFMRQAGRSLPEYRQAREGTTMLESCLDPALAAEITCQPVRRHGVDAAVLYSDIMVPLVLAGVGVRIEPGVGPVLDEPVRTAADVDALVSRSPGDASPVAREAQMVVQELGERTPLIGFAGAPFTIAAYLVEGGPSRDHLAARSMMHSDPVAWGRLMDWVADLDADFLSAQTAGGARAVQLFDSWAGSLSEADYVRHVAPHSTRALSGLDRDLPVVHFGVNATHLAVPFARVAAAASDHPVLGVDHRTTLDHVLASLMVGGLTMPLQGNINPALLFAGTEALEAETRAVVEAGRRAPGHIVNLGHGVPANTDPATLTRLVEFVHSL
>NZ_CP040635.1|WP_097798318.1|1551235_1552636_-|NAD(P)-binding-protein
MDRVDAVVIGGGMAGLIAAWQFTRAGLRPVLLESRGYTGGLVAGSTIAGVSYDIGAEGWAVRIPDTEALAGELGLTVEYPRAAPSWVWFDDGPFAMPVRAILGIPADLGAPDVLTALGVEGARRAAELDSRPVPETLPADLGSLVEQRMGSQVLGRLVAPIAGGIHAADPHLLATEVVSPGLTDAVHRAGSLAGAVALLKGDGPVKPVVASVSGGMFLMPQTLAAQILEAGGRILTRTGARGLSRGGEGWIVNAASTHRGVDPALPPEPDGDPLDLTAPRVVVACSAVTARPLLGQVIDVDGPELTPGAPIAHVNLAIRAPGLDDSPRGNGMLVASGSTGVQAKALTHLSAKWPSLTASCPTGLHLLRISYGRGGQQAQELSVEQAVADAAALTGVSLRADQVVDSQIIHWTGALAPTTPETRSWVQGLHSRIADQQGLGLTGAWASGSGIAALVPHARRTAERLV
>NZ_CP040635.1|WP_097798317.1|1550031_1551078_-|hydroxymethylbilane-synthase
MSRRTSTAPTSPQKRTPVRLGTRASRLATTQSTMVARALDGHGLDVELVHVTTHGDVISTPLSQMGGTGVFASAIRADLLAGRCDIAVHSFKDLPTAQPLGLVVAAVPQREDPHDALVARDGLRLAELPAGARVGTGSPRRAAQLRAARPDLEVVDIRGNVDTRVGRVKGFGGREDLDAVVVAASGLRRLGRGGDISEALDVSVMLPAPAQGALAVECRTTDARHGVLARGLGAIDDLDTRLSATAERAVLAGLEAGCAAPVGCLARVRKGVLDLSAAVVAVDGTRSVRSQAGLELPDRPPEKADEIATLVGAAHALGLQVARELLDQGAARIADLHASKAGPEEATR
>NZ_CP040635.1|WP_138680886.1|1549273_1550026_-|uroporphyrinogen-III-synthase
MVSPTDAGIIRPPVLLPRDSAGDRIGAALKHAGLGVIHHAVTRTVELDGALPRVSQWLEGAGPQDWLVLTSRRAVEQLDAAGLLKQIAVRVAAVGRATGAALAGAGVDVDLVPRDQSGAGLVTDWPDPGARVLLPVSQLAADTVPEGLTAQDCRVTRVDLYTTEPLDALPPVIAQAWPAIGAVVVTSSSIARALDRLVTGAGLVWKAHQHPIAMGRPTARTLEELGHPASAIAAEPTPEAILTAVESVLS
>NZ_CP040635.1|WP_138680282.1|1548266_1549277_-|porphobilinogen-synthase
MTKFPARTLNPALVPLERPRRLRTTAAMRRMVAETRVHPSQFILPVFVVEGIDEAREISTLPGQYQHTTESIKKLAEQAAEAGIGGIDLFGVPTRKDEIGSEAWNPEGILNRGIAAVREAVGDELVICADTCLDEFTDHGHCGALTPDGRVDNDATLPLYAEMAVSQARSGAQMVSPSGMMDGQIAVIRDALDSEGFTDVSILAYSAKYASAFFGPFRGAVNSSLKGDRKTYQQDPANRREGMRETLLDLAEGADLVMVKPASHYLDVLSDVAEISPVPVAAYQVSGEYAMLEAAAANGWIDRRRCITESLTSIARAGADVILSYFSIEAAGWFRD
>NZ_CP040635.1|WP_138680281.1|1546812_1548129_-|glutamate-1-semialdehyde-2,1-aminomutase
MSSNAELFDEARSVIPGGVDSPVRAYGSVGGVPRFIQRASGPWLWDAEGTRYLDLVCTWGPSLMGHAHPQVIAAVQDAASRGLSFGAPTATETELAEEVHSRVPLAQKIRFVSTGTEATMTAIRLIRGATGRDLIIKFAGNYHGHSDGLLAEAGSGVATAGMPGSAGVPAGVTASTLVLPYNDEAALEEAFAARGDQIAGVIVEASAANMGVVPPRPGFNAAIRRITAEHGALMIIDEVLTGFRCGPSGFWGFQQQNGERFEPDLFTFGKVVGGGMPLAALGGRAEVMDLLAPTGPVYQAGTLSGNPLATIAGLRTLQLATDDVYQRLDDRSDQWRQVLAEQLERAGVPFVINNASNLFSMFLGSTPARDGVADYRQAKTQNAEAYTAFFHAMLDAGVNLPPSCFEAWFLSDAHDDQALEVFSEALPGACRAAAKVIG
>NZ_CP040635.1|WP_138680885.1|1545891_1546662_-|A/G-specific-adenine-glycosylase
MLVSEVMSQQTPMSRVVGPWTEWMDRWPTPDDLAEEAPGAAVAAWGRLGYPRRALRLHACATAIAGQLGGVVPSDHQALLALPGVGEYTAAAVVSFAFGGRAAVLDTNVRRVLARIETGVANCGSSTSRADRELASRWLPDSDAQAARWAVSSMELGALVCTARTPLCDRCPVADHCRWLAAGRPMTGAPVRRGQAWKGTDRQCRGVILDLVRNAERGVEVEVALAAWPVRHQAEKCLSSLLADGLVHKKDSTLSL
>NZ_CP040635.1|WP_138680280.1|1544224_1545673_-|catalase
MAIDPKNPPTNENGAPAVSEEHSLTVGTDGPVVLHDVHLVETLAHFNRERVPERSPHAKGSGAFGELEITGDVSAYTKADFLQPGRHTPMAARFSTVAGEQGSPDTWRDVRGFALKFYTQQGNFDMVGNNTPIFFVRDPMKFPHFIRSQKRLPDSGLRSPNMQWDFWTLSPESAHQVSYLMGPRGLPRDWRHMNGYSSHTYSWINAQGKLFWVKYHFITDQGVENMSNAEAMQLAGKNAEYHREDLFSAIAEGNYPSWTFKVQIMPYEDAAGYRFNPFDLTKVWPHSDYPLIEVGKFQLNRNPDNFFGQIEQMAVSPSNTVPGTGFSPDKMLLGRVFAYNDAARTRIGPNFEQLEVNRPIIPTNTYTFDGHMRVEHSGNAPVYAPNSYGRPWAEDSGTADDSWENDGDLVRSAARLHAEDDDFGQAHSLVHDVFSDQDRADLVDTLEGQIVGTDVVEPVKTHMIEYWTKIDEEVGEALAKRV
>NZ_CP040635.1|WP_084149189.1|1543095_1544121_-|LacI-family-transcriptional-regulator
MTGGEQGRGRRPTIRDVAAAAGVSKSLVSRAFIDPDRVGSESLKRIMSTADDLGYRPSWSARALNGPNGGFIGVVIADLYSPALAPIVAGAYRRLRAAGHDVLLSMASLSEPGADRQLEKAQVAFLHDLRPASLLVVGAVPDMRSLETLATQIPIVVAGSRDVALPVAAEVVTDDRAGMDAVITHLVALDHQDIAHIAGIGKVGEARADAFRESMSRHGLATRSTIIQGDFEEDAGYRCARELLASDTPPTAITTAGDPAAVGVLAAIGEAGSDVAVVGYGNAPVASYHLTQLTTMDPDNQQIGATAAATLLDAHLGDAAGRQIRVQPKLIVRSTSIPRSS
>NZ_CP040635.1|WP_028702154.1|1558244_1558622_+|hypothetical-protein
MARLRSTVQAPSRVATRGSTVTFTVTVTNQGAACVWNLKTLPVEVTVDSGSDRIWSTGDCAAWAPKGSHEVAPGKSASVTVKWPTKRSASGSCSLSKEQLGTGTYVASAQVKGGATRQYVMQLTD
>NZ_CP040635.1|WP_028702153.1|1558663_1558891_-|helix-turn-helix-transcriptional-regulator
MSGRIRPGTVHCRLDELLAERGMTLTDLSKRVGLSYANLSVLKNDHGRAIRFSTLASICAALDCEVGDLLEVRDD
>NZ_CP040635.1|WP_138680285.1|1558892_1559537_-|hypothetical-protein
MAQPTFRASRIVPRSVLIVVTLVSGLGLLASLLYGAMAQDANRRTMSMEVAITGGLPRPGLGSSRADVQYSSVMIYSLPGLTRADPLVAVATAIPYLVGGLTCLVVLVLAVQMLRRRELGLGVAVAMLTIAALCVASGIARPALEARAEQLYVTGLGLPTSWQGHQMWLVLNSRHPLGWGYWDWPLIVLGLLIALGGWLVLRARQLRLDLEGTI
>NZ_CP040635.1|WP_138680286.1|1559650_1560745_-|DNA-integrity-scanning-protein-DisA
MTEDAADKADGAPERVRHLMALLAPGTPIRDGLERILHGHNGALIVLGDSPAVRQVSSGGFDIDVQLTPQALRELSKMDGGLILSSDHERILAAAVHFVPDGSLPTMETGTRHRTADRVSQQTGVPVVVASASMSTLAVFLDGDRHRIEEPETLLSRANQALNTLNSYRARLVDRAAQLTVVEVHDVATVDDVAALAQRIEMTRRIDAEVRGYVSALGVEGRLVGLQRDELFAGVDEQSRLLVEDYRPEGIDPWKFSLAGLHRLSWEDLGNLTLVAQTMGLDPRTYPATMVLHARGHRQLSTIGELPPRAAQTIVDHFGSLQALYASSTSELSELSGVGLQRARSIRAALERIFEGDDKTPGLH
>NZ_CP040635.1|WP_036980516.1|1560770_1562189_-|DNA-repair-protein-RadA
MAKKTSDGWVCTECGWTTAKWVGRCGECQTWGSVVEKGAPKLTDVPSHVPTARAVRIGDVSEQAADRHLTGIGELDRVLGGGLVPGVVVLLAGEPGVGKSTLLLDVAAKWAQAGRRTLYVTGEESAAQVRLRAGRTGALADELYLAAETDLGTVLGHIEQTNPSLMVLDSVQTIGTTATDGSPGGVSQVREVTGALVRVAKQRGMAVVIVGHVTKDGSIAGPRTMEHLVDVVLAFEGDRHSGFRMVRATKNRYGPADEVGCFEMTDAGIIEVPDPSGLFTSDNADPQPGTCVTVTMEGRRPLLSEVQALVAPSATEKYPRRTTHGVENGRVAMILAVLERKAGLPLSSRDVYVSTVGGAKVTDPSADLAIAVAVASGSIDRNFPTRVVALGEVGLAGDLRRVPGLERRVGEAARLGFDLAVVPRNSREAHSKAPTMHGLHVVEVSTVAEALGVLNLARRRRPTASEEDRQRA
>NZ_CP040635.1|WP_028702150.1|1562362_1563001_-|VOC-family-protein
MHVDHLTFVAGPEGLKVEAARLGAKLGVSLKDGGFHPRFGTRNHILPLAGPRYIEVVEVLDHPAADKAVYGQAVRARSEMGGGWMGWSVAVDDLAPYEERLHRESVPGSRQFPDGRRLQWHQIGIKGLIADPQLPYFIHWESPTDLRPTSLEGVVRLDSVELSGSRERVEDWLGESIPDQVEGINFDFTSPNGHPGINAVVLDTPDKGLIRI
>NZ_CP040635.1|WP_028702149.1|1563162_1564002_+|sugar-phosphate-isomerase/epimerase
MTLSTSSMYPESTASTFECASQLGYDGVEVMVGMDAVSAEIDDVEALAEYHQMPVTSVHAPCLIVTPNVWGTDPWGKLVTSGEAARRLGAHVIVVHPPFRWQRDYAARFEAGIAELNAEPQNRAAGLVYAVENMYPWRTPAGRFLAYAPDWDPTLRSYDHLTLDLSHASTAQMDALEYVRSWGPRLAHIHLTDGSGTFKDEHLMPGEGSQRSWEVVRDAVGRGFDGDVVIEVNTHRFTSRALRQDALGRVLEQTRAAVAEGLQSRVQAYSEPRGDAGRS
>NZ_CP040635.1|WP_028702148.1|1564030_1564945_+|proline-dehydrogenase
MHAATNERIAAAVTRLGPAREIAASYVAGETLPEAVRAARDAVDKGLEVSLHPLVPTATTPAEADRATDGLLAAISALGSSAEMTGHSEVSIALSTLGVCLPEAGPSTALDRAQKICRAAGNAGVLVTVDDEGPEIHEAVLDIVRSLLADFPETGVVVQAARHDSLDQIRELATTGRRIRLCKGDYTGPRSEMVVAPHDVDLRMSACLRTLLQGPATALIATHDPVFIAIAERLIADLNRGPQTVEFQMLQGIRPLEQRRLADIGRRVRVYLPWGRDWYSYCTRRIIERPANLMLFSRSLVARR
>NZ_CP040635.1|WP_138680888.1|1565079_1566063_+|CPBP-family-intramembrane-metalloprotease
MDEATELRSSDTPSSTAAPAPRAASAAPGSSDPAQRDSDHAPRDSDSAPRGTGATPLSGGGVPLVPVDPERDRRIARRRRLLIIETVLVLAISLGQSAWYSILRIIERMTRGVPLAKQTSTLNASVTPGRPWLDLGYQLSDIAFGVVPALLAIYLLATVNPPRGGVRHRLGLVGPRWGHDLGAGVVIAAAIGIPGLGLYATSRALGINTTVQASALQGAWWVIPVLILAAVMNAVLEETVMIGYLITRWLQVGWSTLTVVLASALIRGTYHLYQGWGGFLGNVVMGAVLGLIFTRTRRLLPLVVAHTVLDVVSFVGYALLAPHLSWL
>NZ_CP040635.1|WP_126412760.1|1566194_1567238_+|aspartate-semialdehyde-dehydrogenase
MAPMRVGVFGATGQVGGVMRTLLAQRHFPLDDVRFFSSSRSAGKKLTFKGTEITVEDTATADFSGIDIALFSAGGGTSRQYSPQVAAAGAVVVDNSSAWRKDPEVPLVVSEVNPGDVANRPKGIIANPNCTTMAAMPVLKPLHDAAGLTRLVVATYQAVSGSGLAGVRTLAEQSLAITDPAALALDGQVGPGIDLGPYVAPIAYNAVPLAGNLVDDGSGETDEEQKLRHESRKILHIPDLLVAGTCVRIPVFTGHGLVVHAEFAHPITPQDATRLLSGAPGVALAEVPTPRDAAGTDPSLVGRIRVDQSAPEGHGLVLFCTADNLRKGAALNAIQIAELVAAEGATR

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Crispr_ID: NZ_CP040635_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040635_8

1675469-1675557

Orphan

Consensus_repeat	Method
GGGCACTCCGGGGCCGCGCGGGGAGCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040635_8

>merge|NZ_CP040635|8|1675469-1675557|CRISPRCasFinder
GGGCACTCCGGGGCCGCGCGGGGAGCTGCGAGCCCGTACATGTTCCGCACGTAATTGGTTGGGGCACTCCGGGGCCGCGCGGGGAGCTG

>NZ_CP040635|8|7|1675469-1675557|CRISPRCasFinder
GGGCACTCCGGGGCCGCGCGGGGAGCTG	CGAGCCCGTACATGTTCCGCACGTAATTGGTTG
GGGCACTCCGGGGCCGCGCGGGGAGCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040635.1\|WP_097798362.1\|1661311_1662310_+\|asparaginase	unknown	unknown	gnl\|CDD\|199207
NZ_CP040635.1\|WP_084149560.1\|1659903_1661292_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
NZ_CP040635.1\|WP_138680325.1\|1683505_1684402_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP040635.1\|WP_138680321.1\|1667688_1669947_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	unknown	unknown	gnl\|CDD\|234921
NZ_CP040635.1\|WP_084149558.1\|1663874_1665290_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|235687
NZ_CP040635.1\|WP_138680322.1\|1672393_1673137_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040635.1\|WP_138680326.1\|1684589_1686068_+\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119324
NZ_CP040635.1\|WP_127822681.1\|1666461_1667466_+\|IS481-like-element-ISPfr15-family-transposase	unknown	unknown	gnl\|CDD\|372671
NZ_CP040635.1\|WP_097798368.1\|1676997_1678518_+\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236113
NZ_CP040635.1\|WP_028703968.1\|1675673_1676966_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_CP040635.1\|WP_138680323.1\|1678514_1679660_+\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP040635.1\|WP_028703966.1\|1679770_1679980_+\|DUF3073-domain-containing-protein	unknown	unknown	gnl\|CDD\|378620
NZ_CP040635.1\|WP_028703963.1\|1682609_1683506_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP040635.1\|WP_028703964.1\|1681169_1682486_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270303
NZ_CP040635.1\|WP_138680327.1\|1686081_1687074_+\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119323
NZ_CP040635.1\|WP_138680324.1\|1680028_1680979_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP040635.1\|WP_138680320.1\|1665486_1666395_+\|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB	unknown	unknown	gnl\|CDD\|236515
NZ_CP040635.1\|WP_028703969.1\|1674054_1675413_+\|dipeptidase	unknown	unknown	gnl\|CDD\|236127
NZ_CP040635.1\|WP_097828417.1\|1659101_1659779_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurQ	unknown	unknown	gnl\|CDD\|235140
NZ_CP040635.1\|WP_051238659.1\|1673133_1673937_+\|slipin-family-protein	unknown	unknown	gnl\|CDD\|259808

Protein	Function_ID	Function_description	E-value
NZ_CP040635.1\|WP_097798362.1\|1661311_1662310_+\|asparaginase	gnl\|CDD\|199207	cd08963, L-asparaginase_I, Type I (cytosolic) bacterial L-asparaginase. Asparaginases (amidohydrolases, E.C. 3.5.1.1) are enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases. This model represents type I L-asparaginases, which are highly specific for asparagine and localized in the cytosol. Type I L-asparaginase acts as a dimer. A conserved threonine residue is thought to supply the nucleophile hydroxy-group that attacks the amide bond. Many bacterial L-asparaginases have both L-asparagine and L-glutamine hydrolysis activities, to a different degree, and some of them are annotated as asparaginase/glutaminase. One example of an enzyme with no L-glutaminase activity is the type I L-asparaginase from Wolinella succinogenes.	8.19781e-119
NZ_CP040635.1\|WP_084149560.1\|1659903_1661292_+\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	5.76061e-159
NZ_CP040635.1\|WP_138680325.1\|1683505_1684402_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	4.32727e-67
NZ_CP040635.1\|WP_138680321.1\|1667688_1669947_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	gnl\|CDD\|234921	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL.	0
NZ_CP040635.1\|WP_084149558.1\|1663874_1665290_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|235687	PRK06062, PRK06062, hypothetical protein; Provisional.	0
NZ_CP040635.1\|WP_028703963.1\|1682609_1683506_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.74327e-59
NZ_CP040635.1\|WP_138680326.1\|1684589_1686068_+\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|119324	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	8.13254e-72
NZ_CP040635.1\|WP_127822681.1\|1666461_1667466_+\|IS481-like-element-ISPfr15-family-transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	1.89679e-20
NZ_CP040635.1\|WP_097798368.1\|1676997_1678518_+\|amidophosphoribosyltransferase	gnl\|CDD\|236113	PRK07847, PRK07847, amidophosphoribosyltransferase; Provisional.	0
NZ_CP040635.1\|WP_028703968.1\|1675673_1676966_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.2453e-13
NZ_CP040635.1\|WP_138680323.1\|1678514_1679660_+\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	2.42526e-173
NZ_CP040635.1\|WP_028703966.1\|1679770_1679980_+\|DUF3073-domain-containing-protein	gnl\|CDD\|378620	pfam11273, DUF3073, Protein of unknown function (DUF3073). This family of proteins with unknown function appears to be restricted to Actinobacteria.	8.19439e-17
NZ_CP040635.1\|WP_028703964.1\|1681169_1682486_+\|extracellular-solute-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.64925e-34
NZ_CP040635.1\|WP_138680327.1\|1686081_1687074_+\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|119323	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	4.04517e-61
NZ_CP040635.1\|WP_138680324.1\|1680028_1680979_+\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	4.87988e-14
NZ_CP040635.1\|WP_138680320.1\|1665486_1666395_+\|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB	gnl\|CDD\|236515	PRK09435, PRK09435, methylmalonyl Co-A mutase-associated GTPase MeaB.	7.85178e-163
NZ_CP040635.1\|WP_028703969.1\|1674054_1675413_+\|dipeptidase	gnl\|CDD\|236127	PRK07907, PRK07907, hypothetical protein; Provisional.	0
NZ_CP040635.1\|WP_097828417.1\|1659101_1659779_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurQ	gnl\|CDD\|235140	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ.	8.03771e-130
NZ_CP040635.1\|WP_051238659.1\|1673133_1673937_+\|slipin-family-protein	gnl\|CDD\|259808	cd08826, SPFH_eoslipins_u1, Uncharacterized prokaryotic subgroup of the stomatin-like proteins (slipins) family; belonging to the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model summarizes a subgroup of the stomatin-like protein family (SLPs or slipins) that is found in bacteria and archaebacteria. The conserved domain common to the SPFH superfamily has also been referred to as the Band 7 domain. Individual proteins of the SPFH superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Bacterial and archaebacterial SLPs remain uncharacterized. This subgroup contains PH1511 from the hyperthermophilic archaeon Pyrococcus horikoshi.	1.07743e-98

>NZ_CP040635.1|WP_028703969.1|1674054_1675413_+|dipeptidase
MNLAEHSSELEARVDAVMESAVEELTRLVAIPSVSSLNPDQVVANAEHIADLASRAGAADVAVVTEGQGLPVVIAHWPAPEGAPTVLLYSHGDVQPTGDLSAWGSEPFTATRRGDRLYGRGTADDKGGVAAHLAAIRALGDRPPVGITLLIEGEEEIGSPSMAAIIAAHRSELAADVIVIADAVNWEQGVPSLTTSLRGVADCTVEVRTLDHPLHSGQFGGVVPDALTTLCRLLATLHDENGDVAVEGLGSYPAPDLEYPEDRLRAETAILDGVEWTGTGSLVERMWTRPSISVLAIDATPVAQAVNILPAAARAKVSLRVAPGDDAGRALEALTRHLESHVGFGAHVSISAGQIGAPGLIGISGPAGQVAEEAFRIAWGHEPVEMGCGGAIPLITDLQQTFPEATVLVTAVTDPDSRMHGIDESLHLGDFRRAILTEVLLLTGLADLPGRS
>NZ_CP040635.1|WP_051238659.1|1673133_1673937_+|slipin-family-protein
MNHTEWLFTTIALVMLVVGILVTCLKIIPEYERAVVFRLGRLRPLHGAGLVFIVPGLDKLVRVDTRTVTLTIPPQEIITQDNVPARVNAVVLFNVTDSRDAVMNVENYAVATSQIAQTTLRSVLGRADLDTLLAHREQLNHDLREIIEVQTRPWGVDVSVVEIKDVEIPEAMQRAMARQAEAERERRAKVINARGELQASGELKQAADVLSQSPASLQLRYLQTLLELGADQNSTVVFPLPMDIITPLLNAMGGDRRSAEPTGDQAH
>NZ_CP040635.1|WP_138680322.1|1672393_1673137_+|hypothetical-protein
MTAPVQIFLVCGYAVLLIAVAWLLDLFGRRSARRSREWKTANFVFHDSHGAWKCHEDHWLWPASFDPVKRVIRYRGQHEICGRCPVKDSCAPGVSAREITAPVDPWPYSEAGTFHRGMSLCILIAGLALPAGMLLMARTTAEYVALLATIAVVGLVALPMVRSLRTRPVDIPDEIPIESSVPLDAGFDEIPGPRSRAVTRGVHGQPLTDRASDEAEQLIRRYSSRWSTGSTRQGGSRATRTRTGGPR
>NZ_CP040635.1|WP_138680321.1|1667688_1669947_+|phosphoribosylformylglycinamidine-synthase-subunit-PurL
MADTVENARNTPDLAQPWADLGLAEDEYRSIREILGRRPTGGELAMYSVMWSEHCSYKSSKIYLKKFAALPQTTPRGPLLAGIGDNAGVVDIGNGLAVTFKAESHNHPSYVEPHQGAATGVGGIVRDIMAMGARPIGVMNALGFGPLDAPDTARVLPGVVSGIGDYGNCLGLPTIGGQTVFDPTYYGNPLVNALCVGVLRHEDLQFAKASGAGNLVVLFGAATGGDGIGGASILASESFEAEGESKRPSVQVGDPFMEKLLIECTLELFYAGVCEALQDFGAAGISCATSELASAGDGGMHVELDRVPLRDPNLAPEEILMSESQERMAAVVTPENLERFMEICAHWQVQATVIGEVTDGDRLIVDWRGEKIVDVDPHTVAHDSPELHMPVARPDWIDPLNADHANNLPRSNDGADLAAQILALVGSSNLCDRSWITDQYDRFVRGNTVLAQPSDAGMIRVDETSGLGIALSLDANPRYGMLNPYLGAQLALAESYRNVAVTGATPVAITDCLNYGSPYDPHVMWQFSETILGLVDGCRELGVPVTGGNVSLHNRTGDQSIRPTPLVGMLGIIDDVANRIPAGFCHCGDAVLLLGETKVEMGGSAWEDVIHDGHLGGMPPMPNLPAEKALGQVLAAAAADGLLSSAHDLSEGGLSQALVEACLDHGIGVSLTLPEGEPAVTLFSESPARALVSLSGADYQRFTGLCAEHGVPVARLGEVVDSGKIEIQDLLSLDLATLGKTWQAPIPAAMEI
>NZ_CP040635.1|WP_127822681.1|1666461_1667466_+|IS481-like-element-ISPfr15-family-transposase
MTHANAPLTPAGRLRLAACIVDDGWPLRRAAERFQVSPATAKRWADRYRAGQPLIDHSSRPAHSPNRLSRRTEHRIVGLRFTRRWGPHRIAYHLHIPRSTVGRVLERYHMPVLANTDQATGLPVRRPDPVRYEKQAPGDLIHVDIKKQGRIPDGGGWRAFGRGSVQDRTARAAGDRAARAGAPASRGYRYLHHAVDDHSRVAYSEICDDEKKETAAGFMTRALTFFESIGVAVKAVMTDNGACYRSRVFSQVLDDAKIGHKWTRPYRPQTNGKVERFNRSLAAEWAYARDYTSETEREAAYTEWLHHYNHHRPHTGIGGQTPSERVHNLTGKYT
>NZ_CP040635.1|WP_138680320.1|1665486_1666395_+|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB
MGPVDVNDLVEHVVAGSRPHIARALTLVESSRPVDRERTRTMLRLLAPHTGKAVRVGISGVPGAGKSTFIDAMGCRLVDEYHHKVAVLAIDPSSANTGGSILGDRTRMGALAEREDAFVRPSPSGGSLGGVARATREAIVVMEAAGYDVVLVETVGVGQSEVAVAGMVDTFLLLSVAGTGDQLQGIKKGVLELADIVAVNKADGDNAPNAREAARNLRQAMRMMSSSTEEDSRKIPVLTCSAVSGEGLDDVWKAVQDHRSWLVDNGSLESRRTLQQHEWMWSIVRNRIMDSLDVLPRDVVNS
>NZ_CP040635.1|WP_084149558.1|1663874_1665290_+|aspartate-aminotransferase-family-protein
MSTSSHSSTGNQREAGIRPVVGWEEDCGAAGVGHDLTGADLDAAVIEADHSRVLHSWSAQAHLPSSSIAGGSGASLWDYAGNTWIDFSSQLINVNIGYQHPRVVAAIRRQAEVMTMVAPSTSNKQRAEAAGKILEHAPAGFEKVFFTNAGADANENAMRMARLVTGRDKIISRYRSYHGNTGASIVATGDWRRIPNEYARGHVHVFGPYLYRSEFWATTAEQECARALEHLEHTILAEGPETIAGILLESVPGTAGIMVPPPGYLAGVRRIADRYGIVMICDEVMAGFGRTGAWFAFQRQDVVPDLITFAKGVNSGYVPAGGVVISSEIAHFFDERVFPGGLTYSGHPLAMAAIVAAITAMEDEGIVENADQIGETVLGPGLRALGDNPLVGEVRGQGVFWAVELVADKATRERLEGSRLAAVSRRCHQRGLILPVHDNRIHVVPPCVITAEQATRGIEILADALAEEARH
>NZ_CP040635.1|WP_097798362.1|1661311_1662310_+|asparaginase
MRVEILYTGGTLGMVDTPQGLAPGADLEGWLHRLLSGTELDRGVGLVTFDHLIDSANATPEDWQHIVDELWARHDDADAFVVLHGTDTMAYAAAALSYALTGFDKPVVLTGAQYPLGVVGTDAAPNVTGALRAAMAGQSFGVAIFFGHKLLRGTRVTKTSSWAFQGFGSPSVPELARTGAPWQWTAPGPRGCGWDSPRPYRRCDIAVLDLAPGITADRLAAMIDPRPEAVVLRAFGVGNAPSDEPGLVDVIAATIADGVPVVVTSQCHQADVLLGHYEAGWELARAGAIGSEDMTLEAVYAKLVFLLSQGLGAEEVAHWMGTSIAGELTVRS
>NZ_CP040635.1|WP_084149560.1|1659903_1661292_+|amino-acid-permease
MIAIGGSIGTGLFLGAGGRLAKGGPALAIAYAICGLFAFIMVRALGELSIHRPSSGAFVSYAREFMGEKGAYITGWLFFLDWATSVMADITAVALYLHFWTFFQPVPQWVLAMIALAVVFTLNMFSVKYFGEAEFWFAAIKVTAIVAFMAVAIWAIVTGHAVGKDHAGLANLTQHGGFFPLGVAPLLTLSLGVIFAFGGTEMVGVAAGEAAEAKKILPKAVNSMILRIFVFYVGSVILMTLVLPWTAYSGDESPFVTFFARIGVPYAGDIMQVVVLTAALSSLNAGLYATGRTLRSMAVAGEAPRMASKLNRHQVPAGGITITASLGLIGVLINYIYPSGAFDIVMNLAGIGIAGTWISILASHVIFVRRARRGDVERPDFRLRGAPVTNIVAIVFLVVVIVSMWFDPGVGRPTIYMFLGVVVLLVIGWFAVRNRIKGDLLDNILDADSAESADTTSQTSQK
>NZ_CP040635.1|WP_097828417.1|1659101_1659779_+|phosphoribosylformylglycinamidine-synthase-subunit-PurQ
MAPRIGVVTFPGTLDDQDAARAVRLGGAEPVHLWHASADLKGVDGVILPGGFSYGDYLRAGALAALSPVMTAVREAADRGLPVLGICNGFQVLCEAHLLPGTLMRNEQRRFHCSVQELVVESIDTVWTCDFKPDQRILIPAKHGEGNYVASTDELAALEANNQVVFRYVRNPNGSEHDIAGVTNETGNVVGLMPHPEHAVEDLTSGGTDGLGFISSVRRFLSVHV
>NZ_CP040635.1|WP_028703968.1|1675673_1676966_+|MFS-transporter
MAAIRYRTLFSYSGATFVAVGFAARLPLAMSQLGTMLLVSSPMVAGRMGPGGIAAGAVALANAIGSPLFGGLTDRRGQRGLMILQAMAGGIALIVEAVVAVIGAPWPVVAAIGAVAGFFMPQIGTMARVRWRQIAAARPAQRAGILETSFAWEGSGDEASFALGPALTGVLAVALGPVWAIVVAGVMLLVFGTWFAVHPTVRLVKATARAASARSAAAGSSSGPTRERLFTPGVLAATLGLLMIGVIFGSVQTGTTTLATAAGRPGLAGLLHAVLSIGSATAGLLLPRLAHRVGLVGRWRVFATALAVLTLPLLAVNTLGGLLPELLVLGLAVAPYLITLYSVAERAARPSRIGAAMTVLAATTSLGYSLGASIAGQLADWGGHTPAYAVTVCAGAIACLLGWLVARRVTPAPRVHDPRKHPGRPTVVTD
>NZ_CP040635.1|WP_097798368.1|1676997_1678518_+|amidophosphoribosyltransferase
MTRADGHLTADLDPQDHGPQDACGVIGVYAPGEEVATLVYFGMYALQHRGQESAGMAVSDGRRTMVFKDMGLVSQVFDGPTLDTLKGSLAIGHTRYSTTGSSVWDNAQPTFRSRPGGGGLALAHNGNLTNSEELEELIRARDPEASVPHKERMDSTSDTALMSALMATYEGPIDEIAMKVLPVLKGAFSIVFMDDTMLCAARDPQGIRPLVLGRLETGWVVASETAAIDIVGGTFVREVEPGELITISAAGLRSARFATARPKGCIFEYVYLARPDTIIANRRIHNVRVKVGKILAQQAPVDADLVIPVPESGTPAAIGYADESGIKYGMGLVKNSYVGRTFIQPSQTLRNLGIRLKLNPLRDVIEGKRLVVVDDSIVRGNTQRQLVAMLRQAGAKEVHVRISSPPVKWPCFYGIDFATRAQLIAAGLSVEEIAASIGADSLAYVSLEGLIQATHVPKDDLCRACFDGVYPVQVPPEADHLLADSPSATGRDHQATLPEAPQEDPS
>NZ_CP040635.1|WP_138680323.1|1678514_1679660_+|phosphoribosylformylglycinamidine-cyclo-ligase
MTPPSQSSSTQPSSPGPTSPESAQAGSGTPSAYARAGVDIEAGERAVELMKAHVAQTARPEVIGGLGGFAGFFDASALAHFRHPLLATSTDGVGTKVAIAQAMDVHDTIGFDLVGMLVDDLVVVGAEPWFVTDYIACGRVRPERIANVVKGIAQACEKAGCALLGGETAEHPGLLAAEEYDVAGATTGAVEKDAVLGPDRIVEGDALLAVASSGLHSNGYSLVRSVLLGQAGWKLEKVVPDLGRSLGEELLTPTTVYAADLLALIGAVEVHAMSHITGGGLANNLARVIPDGLEATVDRSTWAPAPIFRLVQEVGRISRPDIEETLNMGVGMIVVLPADRVETAVTFLAGRGLTAWQCGSMSSRGHDDAGAVQLVGDYRSL
>NZ_CP040635.1|WP_028703966.1|1679770_1679980_+|DUF3073-domain-containing-protein
MGRGRAKAKQTKVARDLKYRSVDMDLESLERELRGDKVREREDPGKEDELSDKYADLAEKYSHYGEDDQ
>NZ_CP040635.1|WP_138680324.1|1680028_1680979_+|alpha/beta-hydrolase
MRWIADPVVPGFEWARIALPRAAKVPGDPEGLLTASLIRPHPPRRRRALLYLHGWSDCFYQAHLSDEVESWGMDFHALELRRYGRNLVDGQMAGWIPDLVDYDQEINAAMSLIGADHDEVTLMGHSTGGLILPLWMARHPHRASGIILNSPWIDLQGSTMTRLMAGPVTRAVSQASATTVLPLPSHDNYSRSVRREFGGEWAIPFQKSHGDAFVVRAGWLNAVLAGHAMVEQGLGIEVPILTLLSARSDLSATWSETMRGADTVLDVSRLAAASVHLGRHLTLVRVTGGLHDLVLSAPSVRAGVFAEMRRWVQAYQ
>NZ_CP040635.1|WP_028703964.1|1681169_1682486_+|extracellular-solute-binding-protein
MRGKRLAALATASLLVLSGTVACGSSSSTKAGSDETSASTPKAGGAGGTVGVFTWWADGSEKKGLDALEKMFKEKYPNDTFQNLAVAGGSGSNAKAKLASDLKNGNPPGSFQGHAGAELMDYIDNDQVEPVDSIIKEVGGESVFPKTLLDRLTVDGHIYSVPVNVHRANVVWSNTAVLKKAGVTSTPKSVDEWLADMAKVKASGVSTPLSIGGTWTQTELFESILASNLGADEYNKLFTKDGKWDSDGVKASIEQYKKALSFANTASDGDDWPNATDMVANGKAAYNVMGDWAVAQFEMRNKTYKTDWDAFPMPGKENIFDFLADSFTLPTGTKNPEGTKDWLRFVGSKDAQTTFNKVKGSIPPRTDISPEGFSPYQQSAMKDFKSPDTKIVSSIAHGAAVSLAWSSEINTAMSKYYQDKNSANLVSALVASHGKYAQ
>NZ_CP040635.1|WP_028703963.1|1682609_1683506_+|sugar-ABC-transporter-permease
MVKLRRWLPSFLFVLPSIILIGIFVYGFIGKNIVASFATVRTRSGRLKAPGGFQNYSTLIGDPRYQHALWNLLVLTVVFIAGTMFFGLLWALLLERGVRAEGVFRSVLLFPMAISFIAAGVVWRWLLSPAQGSDAVGLNQLFQMMGLDGLQSSWYSAGRFNMAAMAIPAIWQLSGYIMALFLAGFRGISEDQREAARVDGATEFKLYRHVLFPQLSPIALSALIIVGHMSMKMFDLIYSIAGQSSYTAEVPATLMWTQMFQLNDPTAAAVNATLLLLIVAVAVIPYLIYTNRTEKGAR
>NZ_CP040635.1|WP_138680325.1|1683505_1684402_+|carbohydrate-ABC-transporter-permease
MSSATLEADRLAAVPHRHRRSTRGQKAFGTVQYALLFVFSIIVLMPAYVLLVTSFKRQGDYDQSTAWQIPTTWSVEGWVAAWNTLAPAVGRSLVMAILAAVLSSVLGSLNGYIVAKWHFPGSHVIFVLFLFGMFIPYQAIMIPLSGMMLNIQDSAPWFAGVPTLILCHIVYGIPICTLIFRNYYATSVPNEMIEAARVDGATTWSTYTRVVLPVSPPGFVVTLIWQFTSAWNDFLFALFLTNQNNGPVTFGLNALASGQNPNYPQIMAGVLVASLPTLIVYIVLGKYFVAGLMSGSVK
>NZ_CP040635.1|WP_138680326.1|1684589_1686068_+|branched-chain-amino-acid-ABC-transporter-permease
MRPGRRRGSPGTPQRAGDTGGKRVRPAHPAIIRTSYGGRLWRLGLALLAFLALFGTLQAQNAPGAHAAGVQLIVTVADDSGKPVAKVGLTVADAAGKLIKGTTDAQGKATVDLTASGRYGVYFDVATLPKGVGPAANPTVRATTGNISPQFTAISLSASGVRTAVTPTPLATAPSSASTPGATVGGSGSGSSGGSSGGTSFIDQLTPKIATGLTFGLLLGLASIGLSLIYSTTRLNNFAHGELVTFGAFMAYMIAGQWGLNGWIAILGALILGGCFGYLQDISLWRPLRKRRLGMMQIMIVSIGLSLALRYIFAFIWGPDRLSIPADNDPVVSFGPVNLRYWDVVGSIIAIVLLVLVALFFSFTRIGKATRAVADNKALAAATGINVELIIRIVWVGGGALAGVAGALIGYYQTLQWNAGALILLLLFASVTLGGLGTTWGALVGAIIIGLAMDVSTMWVPTSLKYVVAMLIMIVVLLVRPQGLLGRKQRIG
>NZ_CP040635.1|WP_138680327.1|1686081_1687074_+|branched-chain-amino-acid-ABC-transporter-permease
MDFSFISQALSQLFAPDTAAYALATIGLAVHFGYTGLMNFGQSAFMAVGAYFFAIGARTLNMPLPLCLLFGVLGAVVFALLLGIPTLRLRADYLSMVTIAAAEIVRYVAITPELTPLTGGQGGLTSFDYGNAWAALNPIPAPASGGFYTFGPLSYSRDDLFNLIVCWAVVIVAAVLVWALMRSPWGRVVRGIREDEDAVRALGKNVFSYKMQALVLGGVLAGVAGMLYIMPKGLNPDIGGTQTTFFLWTILFLGGAATVFGPIIGSMIFWFTLIVTDGVVNLLTTSNILPISGIQGGQIRFILVGLGLMALVIFRPQGIFGNKAETYFNG

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Crispr_ID: NZ_CP040635_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040635_9

1995449-1995537

Orphan

Consensus_repeat	Method
CGCCAAGAAGCAGGCGAAGAAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040635_9

>merge|NZ_CP040635|9|1995449-1995537|CRISPRCasFinder
CGCGGCCAAGGACGCCAAGAAGCAGGCGAAGAAGCAGCGCAAGACCGATGCCAAGGCGGCGAAGACCGCCAAGAAGCAGGCGAAGAAGC

>NZ_CP040635|9|8|1995449-1995537|CRISPRCasFinder
CGCGGCCAAGGACGCCAAGAAGC	AGGCGAAGAAGCAGCGCAAGACCGATGCCAAGGCGGCGAAGAC
CGCCAAGAAGCAGGCGAAGAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040635.1\|WP_028702929.1\|1999303_2000041_-\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|181035
NZ_CP040635.1\|WP_138680905.1\|2003164_2004817_+\|DNA-polymerase-Y-family-protein	unknown	unknown	gnl\|CDD\|176458
NZ_CP040635.1\|WP_097798519.1\|1997357_1998359_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP040635.1\|WP_138680440.1\|2000273_2001002_-\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|225974
NZ_CP040635.1\|WP_138680441.1\|2000998_2002300_-\|Mur-ligase-family-protein	unknown	unknown	gnl\|CDD\|377986
NZ_CP040635.1\|WP_138680439.1\|1996050_1997361_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270453
NZ_CP040635.1\|WP_138680429.1\|1989650_1989866_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040635.1\|WP_138680904.1\|2002568_2003138_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040635.1\|WP_138680434.1\|1992064_1992262_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP040635.1\|WP_138680442.1\|2004840_2008284_+\|error-prone-DNA-polymerase	unknown	unknown	gnl\|CDD\|235553
NZ_CP040635.1\|WP_138680435.1\|1992391_1993054_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040635.1\|WP_051238249.1\|1998355_1999279_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP040635.1\|WP_138680432.1\|1991100_1991502_-\|glycoside-hydrolase-family-32-protein	unknown	unknown	gnl\|CDD\|350110
NZ_CP040635.1\|WP_138680431.1\|1990919_1991108_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040635.1\|WP_138680443.1\|2009502_2010393_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP040635.1\|WP_028702925.1\|1994461_1994941_-\|thioredoxin-dependent-thiol-peroxidase	unknown	unknown	gnl\|CDD\|224146
NZ_CP040635.1\|WP_138680428.1\|1989306_1989678_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040635.1\|WP_138680433.1\|1991498_1992068_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040635.1\|WP_138680436.1\|1993050_1994205_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NZ_CP040635.1\|WP_138680430.1\|1990708_1990927_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040635.1\|WP_138680905.1\|2003164_2004817_+\|DNA-polymerase-Y-family-protein	gnl\|CDD\|176458	cd03468, PolY_like, DNA Polymerase Y-family. Y-family DNA polymerases are a specialized subset of polymerases that facilitate translesion synthesis (TLS), a process that allows the bypass of a variety of DNA lesions. Unlike replicative polymerases, TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. The active sites of TLS polymerases are large and flexible to allow the accomodation of distorted bases. Expression of Y-family polymerases is often induced by DNA damage and is believed to be highly regulated. TLS is likely induced by the monoubiquitination of the replication clamp PCNA, which provides a scaffold for TLS polymerases to bind in order to access the lesion. Because of their high error rates, TLS polymerases are potential targets for cancer treatment and prevention.	2.49224e-28
NZ_CP040635.1\|WP_138680440.1\|2000273_2001002_-\|glutamine-amidotransferase	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	1.05129e-63
NZ_CP040635.1\|WP_138680441.1\|2000998_2002300_-\|Mur-ligase-family-protein	gnl\|CDD\|377986	pfam08353, DUF1727, Domain of unknown function (DUF1727). This domain of unknown function is found at the C-terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.	1.80127e-35
NZ_CP040635.1\|WP_051238249.1\|1998355_1999279_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.2168e-86
NZ_CP040635.1\|WP_097798519.1\|1997357_1998359_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	6.17876e-73
NZ_CP040635.1\|WP_138680439.1\|1996050_1997361_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270453	cd14750, PBP2_TMBP, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose; possesses type 2 periplasmic binding fold. This group represents the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.65229e-115
NZ_CP040635.1\|WP_138680434.1\|1992064_1992262_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	0.000904672
NZ_CP040635.1\|WP_138680442.1\|2004840_2008284_+\|error-prone-DNA-polymerase	gnl\|CDD\|235553	PRK05672, dnaE2, error-prone DNA polymerase; Validated.	0
NZ_CP040635.1\|WP_028702929.1\|1999303_2000041_-\|glutamine-amidotransferase	gnl\|CDD\|181035	PRK07567, PRK07567, glutamine amidotransferase; Provisional.	1.78336e-134
NZ_CP040635.1\|WP_138680432.1\|1991100_1991502_-\|glycoside-hydrolase-family-32-protein	gnl\|CDD\|350110	cd08996, GH32_FFase, Glycosyl hydrolase family 32, beta-fructosidases. Glycosyl hydrolase family GH32 cleaves sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). This family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic nucleophile and a glutamate acts as the general acid/base; a conserved aspartate residue in the Arg-Asp-Pro (RDP) motif stabilizes the transition state. These enzymes are predicted to display a 5-fold beta-propeller fold as found for GH43 and CH68. The breakdown of sucrose is widely used as a carbon or energy source by bacteria, fungi, and plants. Invertase is used commercially in the confectionery industry, since fructose has a sweeter taste than sucrose and a lower tendency to crystallize. A common structural feature of all these enzymes is a 5-bladed beta-propeller domain, similar to GH43, that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	0.00921911
NZ_CP040635.1\|WP_028702925.1\|1994461_1994941_-\|thioredoxin-dependent-thiol-peroxidase	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	1.10277e-60
NZ_CP040635.1\|WP_138680443.1\|2009502_2010393_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.10366e-68
NZ_CP040635.1\|WP_138680436.1\|1993050_1994205_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	9.30965e-26

>NZ_CP040635.1|WP_028702925.1|1994461_1994941_-|thioredoxin-dependent-thiol-peroxidase
MSIRLAPGSIAPDFTLPDASGHPVTLSKLTGQRVIVYFYPAAMTPGCTTQAVDFTTHHDAISAAGYTVLGISPDSVDRLRKFTEKESLTLTLLSDADTKVMRAYGTYGLKNVYGKEIEGVIRSTFVVDVQDDGRPIVSLAQYNVRAKGHVEKLCRELKI
>NZ_CP040635.1|WP_138680436.1|1993050_1994205_-|site-specific-integrase
MARRGFGSIRHLPSGKWQARYIGPDTIEHKADRTFAMQGHAESWLADEEMLISMCTWTPPETRARRKSVPTFAAYAGTIMARRKNRSSRPLRPLTAQDYEKLLRLHINPAIGHIRIDQFAPADIAGWYDGCCPGRKTSRGKCYDLVRSIFNDAVDDGWIDRNPCRLKGAGKPRRSKDVDALPVDVLLTYLDAVPEHYRAALSLAATCALRSGELRGLRRRDVDLKGGTLHVRQQVIKPTVDHHLVYRFADLKSDAGRRDITVPKFLVPTLAAWIASQPVAGRDALVFPARDGHSPMNDSTLNRNHKKAAAAIGRPNLTIHDLRRTAATLAAEDGATLEELKRLLGHTTADVAMLYQVPSARRDRDRAARLDKTITEARRKIPGD
>NZ_CP040635.1|WP_138680435.1|1992391_1993054_+|hypothetical-protein
MEGQPEEHTGDLLIGGRSGYIVGSRVQISPHLEGPAIAEMESYPEDPRFKAVLSMHAMTGKGYQLRELTFSAREGEPELTSAALREFPVRERVREAAIQVIAGMVSSKFGNFTETIKHIQDQVKEAGGRLRPTAEVLELVAIAHEFCQVLQIPTIKNIQAMFSIPNRTASHWVRLSKDRGHLQDDPINVAPDPTAKVWTTRLSAEEVDRLIGGASPKDGD
>NZ_CP040635.1|WP_138680434.1|1992064_1992262_-|helix-turn-helix-domain-containing-protein
MPTTKIKPAKGAGSIPEQAERWGVSTDWVRKQIASGALKIYRRGKIIRIKDGDMDALFTTYGGDR
>NZ_CP040635.1|WP_138680433.1|1991498_1992068_-|hypothetical-protein
MNAIPTASNSGLLVYLAVALVLVAMAAVSRPRRGVALDTPGPYKFNSDAPIRQDRRAGANPTPNKEKDMTKTTEPRLYCLEVAYPAAALITDGALDPDWVPDTFTPTEQVPAFYWPKTDRIYKSRSAARDRAALLRRYGCTVTILECTPAWENIPTANARRRRERTAATIRHSIDSVFTDRDQLGEAQA
>NZ_CP040635.1|WP_138680432.1|1991100_1991502_-|glycoside-hydrolase-family-32-protein
MKWNGKGKTIEYLPNDVMARIKAQRPRWAGRLRAFYQKNPNDPTASMHWIREFPITSGHKDTEVDLVRWGDFTCDGAVTEDSFETIELVGVDGGTCFFTRAELPALIAALQEIAADLDADHLPEHSDEEARHV
>NZ_CP040635.1|WP_138680431.1|1990919_1991108_-|hypothetical-protein
MSDRVLTEAEHQLICNVLDNEVHRLQALEADGLQPSTPSAQLERLTDMVFAADSIILEAHHG
>NZ_CP040635.1|WP_138680430.1|1990708_1990927_-|hypothetical-protein
MADGLNLYGVVSPENWTVAVIDGQPEEIVNLAGMAQMVRSAPIGQRRALRRLRRLLDDDHYSRLLAELERTK
>NZ_CP040635.1|WP_138680429.1|1989650_1989866_-|hypothetical-protein
MRARARAPLPLPLPLPLPLPLPLPARVARLLVTHLSPRARGTPPPLTLRPPPTNPASSSPTTPWTSPPEKS
>NZ_CP040635.1|WP_138680428.1|1989306_1989678_-|hypothetical-protein
MDITTGEVLTGTPDPQATDPWEAAAIEQHTSQPAHYGQTPPAFARAQAKTHRRPKTTETDEQEETRILHIIQRCDYPELTKACAKYGEVINRSEQLRAAVESRMKELRPTDQQPNDQPQGNAS
>NZ_CP040635.1|WP_138680439.1|1996050_1997361_+|ABC-transporter-substrate-binding-protein
MPVSRRNFLAGLGGLGSLAVLSACGSNSDSGTGSSAGASSGPAFTGKGPITYATGKDTSGKLQEILGDWNKTHPDEKVTLTELPESADDQRAAMIQNFQVKSDSYSVVGMDPIWVAEFAAQQWVAALPADTDTSGLLKSSVDSATYFKKLYGVPFATNGQLLFYRKDLLDAAGVGVPTSWDQMWAAWDKVRSSPAAKGMSAYAGQLTKYEGLTVNFTSAVLSAGGKVFDENGKPTVDSAQAKAGLGALVNGFSKGFIPKEALTYKEEESRQAFQDGKLMFLQNWPYVYSKAAATDGSSKVAGKFAVAPVPGIGSNPGMTVLGGLVLGISAYAKNKATALEFAKYMASEKVQKVWALATSQAPVVTSLYSDAEVIKAYPYTEELKKALDSAGTRPQVHNYGDVTLAIQNAVYPALSGRTGVDAALKDLQTKLEALAK
>NZ_CP040635.1|WP_097798519.1|1997357_1998359_+|sugar-ABC-transporter-permease
MSRRARSGEERKEERFAYLLLLPTFLVLALVVGFPLVLSLWQSLFRGGSGINPQTGLVEKGDVFVALGNYTAVFSDPDASAQFWNAFWNTSFFTVVGVLVETVLGVLMALIMVRGMRGLGWVRAGILVPWAIPTIVSALMWKLIFNADGVANKLIGNQILWTTEGWQAKAAVLIADIWKTAPYIGLLTLAGLQTIDTQVYEAAKVDGASAWQSFWRITLPLVKPVLIVAVLFRTLDAMRMFDLPYGLLGMLDSGKTLSMLSWYQAGQSRYGEAAAYSLYLFAYICLIVLVFVRVLGADIMGSQESGRNRSRKGGKGDAPASDPAGAATAGGRS
>NZ_CP040635.1|WP_051238249.1|1998355_1999279_+|carbohydrate-ABC-transporter-permease
MSGETQDTSRAVADDQLEEVRRRRRRPSRVAGRVLTWIGIVMIVVYCLAPFYWMIVSALRLPSMGLDTSFIPDPVSLDNFTAVFQGRNHFGRALVNSLIVAGLTTALVLVVGTVAAYAMARLRFRGKPLVLFAIISTSMFPVVTLIVPLLRLFTGGYAFFPVNWINTYQAMILPSISFALPLAVWTLNAYFRQLPHELEESAMVDGATRSQAFRRVILPLAAPGVFTTAIITFIAAWNEFLIALTMVNDNVHMTANVAISKFTGVSGYDTPYGTIMAAGVIVTVPLLIVVLIFQRRIVGGLAAGSLK
>NZ_CP040635.1|WP_028702929.1|1999303_2000041_-|glutamine-amidotransferase
MKPFLLIATRPEDAAARGEYRAMLRYCGLTPRDVVYSQLDRSPLPRVDLDELSGVIVGGSPYSTSDPTEEKSPDQVRAESELSGLLDRVVARDFPFFGACYGVGTLGVHQGGLIDHTYPEPVSAVTVSLTEDGRSDPLVRLAGVPDRFDAFVGHKESVHRLPAGAVLLATGTAAPVQMFRIRKNLYATQFHPELDVEGITERIRIYRDKGYFDPEEMEPLIERVALAEVEDSHRLLSAFVTRYAR
>NZ_CP040635.1|WP_138680440.1|2000273_2001002_-|glutamine-amidotransferase
MSAAPVKIVLLYQSLLGIYGDHGNAVILTRRLQWRGIDAELVPVEPGDPVPTDGAVYLMGGGEDIAQTTAVHELKTDRGLFTALDNGAVLFAVCAGYQICGKSFTIGARDEIIDGLGLLDIETRRGPERAVGESLSHWTRPDGTSSLITGFENHGGWTQLGSGATPLTSMEVGWGNGDGQTDGAVQGRVYGIYPHGPVLSRNPDLADHLLETALGRPLEPLDMPEIEALRARRIEAVREGRP
>NZ_CP040635.1|WP_138680441.1|2000998_2002300_-|Mur-ligase-family-protein
MSRESRSPRQPRRRPSPRLRTALLAGRVAALASRMAGRGSGASIRGKVTTKLDPRAFAELIASRRIAAVTGTNGKTTTTHFLAAAVRAGLDDDGTEVVTNADGANLHHGIVSALGEAPQAPVAILETDERVVTDTVRLGHPEILVLLNFSRDQLDRNHELTFLGRDWRAALAAAGPDGPMVIANSSDPLIVWVCQRARAVVWVDTKPRWTADSTLCPNCGGVLIHEATSWHCPDCPLRQPEADWWVDGEEAVSRKGDRHHLDLQVPGHFNLTNATCALAAAVEMGISPDDALAGMHTVASPAGRYATTVISGTEVRLLLSKNPAGWTESLPLTSSDPLVLAIDAVAADGKDVSWLWDVDYEQLVGRTVICTGPRALDLAVRLSYAGVEHVVIEDLAEALESPLLAGHWDKDHPIDVLSTYTPFQKLRRLGGLA
>NZ_CP040635.1|WP_138680904.1|2002568_2003138_+|hypothetical-protein
MSVRPGRAVHPGLRPVLPSGLMPEIYSLNGSAQVGLGLLVEGWCAVVGLPELGVEAAREWGVELSRMVLVPDPGSWLETVATLIEGLDVVLAAAPASIAPAAAQRLVARLRSRGSSLVVLGRWPHAHARIDVRTLGWQGLGRGYGALESQRLEITVTRHHSHRTVTLIRGAEGVTAAGESSDDSGGAGR
>NZ_CP040635.1|WP_138680905.1|2003164_2004817_+|DNA-polymerase-Y-family-protein
MLVRVPDWPIRAVQMHTEHSDPLIVAEKGRVLTCCRRAAEDGVLPGLRVRAAQLRCPRARVVVHDPRVEEEGFAPVVARIEEQVAPAVHVLRPGTAVVPVGGPARFYGGERAAAERLWQVLGQEGWSDATVGVADGMFAAEQAALGVAAVHRGTRTPTGQPVPIGESDPIRIVPAGRSREFLADLEVGALVGSMDDCCTDGGMDLVVSLRTLGLRTMGLVTTLSREQAATRFGRAGRLAHQYALGQDPRPLVPHRSDHDDTVEIAFEDPVASVEQLEQAVRPTLERLIGEIGSRGLICDTVRILIRSTAGVCERTWRHPWQFGSDDLVCRVRWQLAELDRPRADTAEEVVCEYSTGVQAVQLIPTCRPLADHAEGLFGARPAEHLVQILTRLQARLGPRAVLVPSVAGGRLLTERRRLTPFGSVPDGARTGGDQPWPGRLTGPAPGVIYSEPRPVRVQTLGGQSVHPLEDAGGSAGEDPPGGLDAEPGWLIVPGGRRVRVIAWAGPWPVREHWWTDRAVSLDRYQFVTEDQEAWVLVAASSTWWLEARYD
>NZ_CP040635.1|WP_138680442.1|2004840_2008284_+|error-prone-DNA-polymerase
MPYDNPPISWSEMERRIRGKAPETEGHGTDRMRGGPEDAPIGRRRAPFSGRATPPEGPVVPYAELHCHSYYSFLDGASSPEDLVRRAVELGLSGLALTDHDGVYGVVRMAEAAEACGLATSIGSELSIGLPAPQNGVADPVGSHLLVLARGTEGYRRLSGAMTEAYLDEDAEKGRPVYDLDRLADQADGHWIILSGCRKGAVRQGLARGGPDLAGRELDRLVRLFGHRNVVVELTDHRRPCDSHDNDALAALAAARELPVVATNDVHYADPGQFELSCALAAVRARRTLDEMDGWLPAGPVARMRSGSEMARLFARYPGAVERSVEIAEQTRFSLRASRPEMPEQKVPQGHTPMSWLRHLADLGCARFYGDDPVARRRLDEELEVIESKDFAGYFLIVHDIVEFARHHDILCQGRGSAAASAVCYVLGITVVDPVFYRLPFERFLSALREEEPDIDVDFDARRRESVIQYVYGRYGRHYAAQVANVISYRPKNAIRDMAKVLGYSQGQQDAWSRQVERWGSRIGEDQEGADRIPERVRDLAGQVLGFPRHLGIHSAGMVLTRHSVGEVCPIEPARMANRTVLQWDKEDCAWMGLVKFDLLGLGMLAALQHTFDLAAEHCGERWTMQSIPRNEPGVYDMLCRADTIGVFQVESRAQIGTLPRLKPRCFYDLAVEIGLIRPGPIQGGAVHPYIRRRTGVDPVSYPHPMLEPVLRRTLGIPLFQEQLMQMATTVGNCTAADADLLRRAMGSKRGVEKIDSLRAKLFAGMAANGISDDVAQEIYNRIESFANFGFAESHSLSFAVLVYASSWLKLHYPAAYLAGLLRSQPMGFYSSATLVADARRHGVRVLGPDLLASGVHAGLEPARRDGRENPEVSENHENPGRGRSDCLLDHTQEQIGEFDAASPDDCASHRRDGGLAVRLGLADVSAIPVEVTEQIVAEREREPFTSLADLVRRVGLEPDQVEALSLAGAFDRLVGSRRGALWQSGQLAGVAPGQLDIEVCSQPPLLPEPTPVELLGHDLRATGISAEDHPMRHLRAAMAERGVLPIDTLDRVEAGRRIEVAGVVTHRQRPATAGGITFINLEDETGLLNVIVTAGAWKRYRQVALTCSGMVIRGILERGDEGVMNLYADRLERLQMAVVVSSRNFR
>NZ_CP040635.1|WP_138680443.1|2009502_2010393_-|IS3-family-transposase
MTVAVRYTYIFSQEGNYPVRLMCRCLTVSPSGYYDWRARPISATARRRRDLASKIRFYFADSDGTYGYRRIAAELARAGEAVHPDTVRSIMRAEGLVAAQPRLAVRTTIPADDADGRPDLVERDFTAAQPGYKWVGDITYIRTLEGFCYLATVLDCCTKRAVGYAIDDHMRTGLICRAIDMAVRNCEYVRGATIFHSDHGSQYMSKEFTELLESYDIRLSVGRTGLCWDNAWAESFNATLKNERVHRVIYRTRDDAVRDIVRWIELRYNQKRLHSSLGYRTPNEIEAEYRESRQVA

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Crispr_ID: NZ_CP040635_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040635_10

2830595-2830672

Orphan

Consensus_repeat	Method
GGCGGCACGCGACCAGCTGACGGCG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP040635_10

>merge|NZ_CP040635|10|2830595-2830672|CRISPRCasFinder
GGCGGCACGCGACCAGCTGACGGCGCGGCCATGCACGGGGCGGCCTCGCGCTCGGCGGCACGCGACCTGCTGACGGCG

>NZ_CP040635|10|9|2830595-2830672|CRISPRCasFinder
GGCGGCACGCGACCAGCTGACGGCG	CGGCCATGCACGGGGCGGCCTCGCGCTC
GGCGGCACGCGACCTGCTGACGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040635.1\|WP_138680728.1\|2822649_2824311_-\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP040635.1\|WP_138680729.1\|2826778_2828764_+\|amino-acid-decarboxylase	unknown	unknown	gnl\|CDD\|379196
NZ_CP040635.1\|WP_138680951.1\|2838405_2842680_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|227226
NZ_CP040635.1\|WP_138680731.1\|2833612_2835010_-\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|378147
NZ_CP040635.1\|WP_138680727.1\|2821843_2822653_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NZ_CP040635.1\|WP_097798981.1\|2825502_2826690_+\|2,3-diaminopropionate-biosynthesis-protein-SbnA	unknown	unknown	gnl\|CDD\|274872
NZ_CP040635.1\|WP_138680732.1\|2836880_2837438_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP040635.1\|WP_138680730.1\|2828775_2830485_+\|Y4yA-family-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|143509
NZ_CP040635.1\|WP_015070590.1\|2836163_2836766_+\|permease-cadmium-resistance-protein	unknown	unknown	gnl\|CDD\|226750
NZ_CP040635.1\|WP_028701538.1\|2820009_2821770_+\|arsenical-pump-driving-ATPase	unknown	unknown	gnl\|CDD\|275109
NZ_CP040635.1\|WP_010534181.1\|2835017_2835614_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP040635.1\|WP_008598604.1\|2819558_2819981_+\|arsenite-efflux-transporter-metallochaperone-ArsD	unknown	unknown	gnl\|CDD\|377741
NZ_CP040635.1\|WP_002546835.1\|2819098_2819446_-\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|223713
NZ_CP040635.1\|WP_138680733.1\|2837510_2838329_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040635.1\|WP_010552309.1\|2832797_2833616_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|225398
NZ_CP040635.1\|WP_138680734.1\|2842628_2843954_-\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|376574
NZ_CP040635.1\|WP_015069156.1\|2824718_2825204_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|379804
NZ_CP040635.1\|WP_006590980.1\|2835807_2836167_+\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP040635.1\|WP_138679765.1\|2830844_2831849_+\|IS481-like-element-ISPfr15-family-transposase	unknown	unknown	gnl\|CDD\|372671
NZ_CP040635.1\|WP_002546834.1\|2817676_2819071_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|181958

Protein	Function_ID	Function_description	E-value
NZ_CP040635.1\|WP_138680728.1\|2822649_2824311_-\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.71096e-16
NZ_CP040635.1\|WP_138680729.1\|2826778_2828764_+\|amino-acid-decarboxylase	gnl\|CDD\|379196	pfam13454, NAD_binding_9, FAD-NAD(P)-binding.	2.11018e-20
NZ_CP040635.1\|WP_138680951.1\|2838405_2842680_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|227226	COG4889, COG4889, Predicted helicase [General function prediction only].	0
NZ_CP040635.1\|WP_138680731.1\|2833612_2835010_-\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|378147	pfam09299, Mu-transpos_C, Mu transposase, C-terminal. Members of this family are found in various prokaryotic integrases and transposases. They adopt a beta-barrel structure with Greek-key topology.	2.90889e-23
NZ_CP040635.1\|WP_138680727.1\|2821843_2822653_-\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	1.49068e-56
NZ_CP040635.1\|WP_097798981.1\|2825502_2826690_+\|2,3-diaminopropionate-biosynthesis-protein-SbnA	gnl\|CDD\|274872	TIGR03945, cysteine_synthase, 2,3-diaminopropionate biosynthesis protein SbnA. Members of this family include SbnA, a protein of the staphyloferrin B biosynthesis operon of Staphylococcus aureus. SbnA and SbnB together appear to synthesize 2,3-diaminopropionate, a precursor of certain siderophores and other secondary metabolites. SbnA is a pyridoxal phosphate-dependent enzyme. [Cellular processes, Biosynthesis of natural products].	1.81763e-136
NZ_CP040635.1\|WP_138680732.1\|2836880_2837438_+\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	3.22241e-42
NZ_CP040635.1\|WP_138680730.1\|2828775_2830485_+\|Y4yA-family-PLP-dependent-enzyme	gnl\|CDD\|143509	cd06842, PLPDE_III_Y4yA_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.	5.83045e-139
NZ_CP040635.1\|WP_015070590.1\|2836163_2836766_+\|permease-cadmium-resistance-protein	gnl\|CDD\|226750	COG4300, CadD, Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism].	2.74399e-63
NZ_CP040635.1\|WP_028701538.1\|2820009_2821770_+\|arsenical-pump-driving-ATPase	gnl\|CDD\|275109	TIGR04291, Arsenical_pump-driving_ATPase, arsenical pump-driving ATPase. The broader family (TIGR00345) to which the current family belongs consists of transport-energizing ATPases, including to TRC40/GET3 family involved in post-translational insertion of protein C-terminal transmembrane anchors into membranes from the cyotosolic face. This family, however, is restricted to ATPases that energize pumps that export arsenite (or antimonite).	0
NZ_CP040635.1\|WP_010534181.1\|2835017_2835614_-\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	5.25045e-49
NZ_CP040635.1\|WP_008598604.1\|2819558_2819981_+\|arsenite-efflux-transporter-metallochaperone-ArsD	gnl\|CDD\|377741	pfam06953, ArsD, Arsenical resistance operon trans-acting repressor ArsD. This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs.	2.60017e-53
NZ_CP040635.1\|WP_002546835.1\|2819098_2819446_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|223713	COG0640, ArsR, Predicted transcriptional regulators [Transcription].	9.08737e-17
NZ_CP040635.1\|WP_010552309.1\|2832797_2833616_-\|AAA-family-ATPase	gnl\|CDD\|225398	COG2842, COG2842, Uncharacterized ATPase, putative transposase [General function prediction only].	2.201e-22
NZ_CP040635.1\|WP_138680734.1\|2842628_2843954_-\|ISL3-family-transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	1.94043e-76
NZ_CP040635.1\|WP_015069156.1\|2824718_2825204_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|379804	pfam16242, Pyrid_ox_like, Pyridoxamine 5'-phosphate oxidase like. This domain, approximately 140 residues in length, is mainly found in general stress proteins in various Xanthomonas species. It is composed of a six-stranded antiparallel beta-barrel flanked by five alpha-helices and can bind to FMN and FAD, suggesting that it may help the bacteria to react against the oxidative stress induced by the defense mechanisms of the plant.	1.42039e-43
NZ_CP040635.1\|WP_006590980.1\|2835807_2836167_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.28234e-19
NZ_CP040635.1\|WP_138679765.1\|2830844_2831849_+\|IS481-like-element-ISPfr15-family-transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	1.89056e-20
NZ_CP040635.1\|WP_002546834.1\|2817676_2819071_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|181958	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.	2.98443e-103

>NZ_CP040635.1|WP_138680730.1|2828775_2830485_+|Y4yA-family-PLP-dependent-enzyme
MTEEPTLREACQGTPPLSARLEPWMQELLADPATCSSLLERYGSPLNVHDFSALPRNAAELTEVAEGSGVDLRIFVARKANKTLGMVRAAHRAGLGVDVGSERELGQVLEAGVPPHDVVVTAAIKPDPVLRLALESRSLLVMDNLDEVAASRRVAEQVTGARSAEPGRPADGASGAPEPFPVALRLAPKPSDLIPPTRFGESARAWLELIDSGGLGDLLRVDGVHFHLHGYDPTARATALGEALELIDALRERGLAQDGAFVDIGGGIPMSYLDDAEQWDAFWQAHERQAPESGLGGGARAADDDRPAAAPDAGEDAPTAPLTWRREPLRQVYPYHQQVIRGPWLERFLGHEIRPGATAGQALRERGVQLRCEPGRSMMDGCGMTLARVIQRTSASDGVPLVGLEMNRTQCRSTSDDFLVDPILVRTGTRDDATDPSVAGAGQSRASERFEGFLVGAYCIEAELILRRRLAFPQGVAVGDVIALPNTAGYLMHILESASHQIPLASNVERVGGGEAGGSGGDHPSAEVADRSRMGGTDHSSTAVEGSDPRPDVPGFKRDGIDRVLPIRA
>NZ_CP040635.1|WP_138680729.1|2826778_2828764_+|amino-acid-decarboxylase
MAAAETPLRPAADAPLRLAVVGAGPKALYALEELTALLDAAGSATATADDAGAAASESSAASGLIVTVIDPVAVPGTGAAYHSGQPHHLRLNVTAAILDEPATGDFPAYPSWVQDPYPPLADEPYPPRAVVGEYLAQRWQQMIHGLSRHARVEHARARVTDLRREGSAWHLTTDAAPADVGPVDEVLIATGHAAGHRGALVHHWSSPLPLVPAVLPAERMLSAEQVPPGSRVAVRGGALTFIDACLTLTEGRGGTFTESTEVDASGGTEADVPARLVHHRGPHEPTVIRPITRQGLLLDAKPDPGSPLTGAGERAVEQARARFTSGQGMGPDAVLAIVVDAATAMLEGTPAPKKHASTSGRDARDTVAGSRAAVEHTLSTGAEPDLPRGAGRAEAALRRSIETAQGHRSPGPAWALGRVWQTLYSLVSAALRGSDAPEEEWARFRQAAQVLERFAFGPPLVNARKLLAMIDSGAVDLSWMDGGTGIDGNSIHVAPVTESSDATATGRHVDATATGRHDDAPSGGDVDVVIDAVLTPPGLLNLTDELAGSLLHRGLVQVRPGRRGAMIDEAGSPVGRDDAPLVAPDGRTVAGLALLGRPTEDHVIGHDSLNRHLHHEGRCWARRIADRVAGVDDAAPADAAAPAAPADAAVPAAPAPAVAPE
>NZ_CP040635.1|WP_097798981.1|2825502_2826690_+|2,3-diaminopropionate-biosynthesis-protein-SbnA
MTHTSGSPQREHTSSTPADDRPPATPTEAATSGPDIPVGLDNAPEGPGVSAAGFASPVPAIVAGISEAIGNTPLIRLDSLFPDSGVEILAKLESVNPGGSTKDRPAMGMVRDALQTGRLAPGGTVVESSSGNLGVALARACNAHDVRFVCVVDARTNATTVRTIQALGGEIDLVSEPDPATGDLLTARFNRVKELLEEIPDAVNLYQYGNPANPRAHYDGTMREIAEATGHQVDVLMAAVSTTGTIGGCSAYIRDHDMSTRAIAVDAVGSVLFGGTAAPRPLPGMGAGVVTELSRQVQPDQVIRVEGLDCVVGARHLARSEGILAGGSTGGIVHALGGLIPSLEPGTRVVFVVHDGGVPYLETVYDDQWVRENLDADTDAIAEGIEQLRRTARRG
>NZ_CP040635.1|WP_015069156.1|2824718_2825204_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MSTDQDFTQQDVVEKLRGTSIVMLTTARADGKLLSHPMTVQDVTDDADVWLFVGLQGDQADALRQGPEVNLNVSEAGSWLSVAGRAKFVEDRAKIAELWDDSAKSYFPDGVDDPNLALVLVTSESAQYWGLPGGKVAGVAQILKAKVTGGDTPGGTGTTEL
>NZ_CP040635.1|WP_138680728.1|2822649_2824311_-|IS21-family-transposase
MGSRVQLFADIRHDARVDGLSIRELARKHGVHRRTIRQALAAAEPPPRKTPVRSAPRLDPYKPAIDQMLRYDLTAPRKQRHTATRILARLRDEHGATDLSYSTVRDYVRTRRAQIELEAGRRVEAMVPQDHAPGAEAEVDFGEVYVILDGVKTKCHMFVYRLSHSGKAIHRVYPTGGQEAFLEGHIEAFHALGGIPTRHIRYDNLTSAVVQVIHGGDRLREENERWVLFKSHYGFDAFYCQPGIDGAHEKGGVEGEVGWFRRNHLTPMPEVASLDELNDQIRVWEVDDNTRRIAGHANTIGQDHRAELDHLAPLPADDFDPGLILHPRVDRSALITVRMVKYSVPAHLIGQRVRVSLRASCVVVFEGRTVVATHPRLGTRGVTRVELDHYLEVLRHKPGAFPGSTALAQARAAGAFTAAHDAFWAAARKTSGDVAGTQELIDVLLLHRSLPAEAVIAGITSALSVGAVSADVVAVEARRHSVSHTAPAPQRGGTVVNLPPRRHTDSNSLIAALPADTRPLPTVTAYDELLRRRQPNPTPAPAEAHHHTPTGTP
>NZ_CP040635.1|WP_138680727.1|2821843_2822653_-|ATP-binding-protein
MTTTSTSRPASLRRRQGLTEQAAQAAIDQACRRLRLPTIRAVVDDAVTAATKEQLTYQGFLAELLLAEVDDRDRRSTLRRIKSAGFPREKWLADFDFTANPSINPATINELATGDWIRRGDPLCLIGDSGTGKSHLLIALGTAAAEQGYRVRYTLATRLVNELVEAADEKQLTKTINRYGRVDLLVIDELGYMELDRRGAELLFQVLTEREEKNAIAIASNQSFSAWTDTFTDPRLCAAIVERLTYNATIIETGTNSYRLAHTRARQAG
>NZ_CP040635.1|WP_028701538.1|2820009_2821770_+|arsenical-pump-driving-ATPase
MTQFLDNPPPHFFFTGKGGVGKTSIACATAVHLAHQGKRVLLVSTDPASNIAQVFGATIGNKITPIPQVPGLDALEIDPDEAAEAYRNKILEPVRAVLPIKEIEAITEQLSGSCTTEIASFNEFTDLLADTQATAGYDHVIFDTAPTGHTIRLLQLPGSWTSYLDNGKGDASCLGPMSGLEKNRATYRAAVEALTDPTSTRLVLVARAQQSTLREVARTLDELAELDIHATNLVVNGVLPAAAATDDLSRAIHDREQAALAAMPAALAALPRDTVSLKSVNMVGLEALATLFHDEDAPQADAQDTGGQGIGQQPHLAGLVDALPAEADHGLVMTMGKGGVGKTTVAAAIAIALVQRGKKVLLTTTDPAAHLSTTLGNDVDGLEVSAIDPEKAIQEYRDHVMASKGAKLDDAGRAALAEDLMSPCTEEIAVFQQFSRAVNKARDQFVIMDTAPTGHTLLLMDATGSYHRDITRHLDDDQRGHVTTPLMRLQDPDHTKIIVVTLPETTPVTEAQALASDLERANIHPWAWVVNNSLAAAHPTSPLLATRARSEQQQLDAVAATTNRMAVIPTQTREPVGTQQLTALSN
>NZ_CP040635.1|WP_008598604.1|2819558_2819981_+|arsenite-efflux-transporter-metallochaperone-ArsD
MPVIRVFEPALCCNTGVCGPDLDQELVDFTAAVNALKAQGVDVHRANLASEPAQFAEHPVVVKFLQAAGSEGLPLTLVDDVTVLAGRHPRRDELERYAGLNPTKDAQPQGGCCGPQQEAPAASTGCCGQPATTSTVSGCC
>NZ_CP040635.1|WP_002546835.1|2819098_2819446_-|helix-turn-helix-transcriptional-regulator
MTELLEAPMAAAEACAPGGGTISMEQAERVALVVKALADPVRLRILHHIAASRCSSVCACHMPEVFGVTQPTLSHHLKKLVEAGLVDKEMRGKWAHFTPRPEGLAALHEYLAMLG
>NZ_CP040635.1|WP_002546834.1|2817676_2819071_-|FAD-dependent-oxidoreductase
MHVVCVGGSDAGISAGLRARELDPSTEVTVVVADAYPNFSICGIPYYISGEVGDWHHLAHRTRADLEAAGLHLLLDTRATRIDVDARQLEAIGPDDTPALVDYDALVVGTGARPVRPPITGLDTLGAADGVHLLHSMGDTFALGDSLEKLQPRTALVVGAGYIGLEMAEGLTTRGIHVTQVEAAPEVLSTLDPELGTLVHAELVRHGVDIHTGTSVTGIAKGADGLHVTGQARDGEALSWDVDLVLVVVGVTPETDLLVRSGAQTGPRGAVLVDETMATGLPHVWAAGDCVATHHRLLGTTYLPLGTTSHKQGRVAGENALGGNARFAGSIGTQVLKVFDLVAARTGLREHEAIAAGFDPASTTSAPDDHKAYYPGSHPITIRITGDRATGRLLGAQLVGHLTTETAKRVDTYATALFHGMDVADINDLDLAYTPPLGSPWDAIQIAAQAWVTQHQPASTRTQP
>NZ_CP040635.1|WP_138679765.1|2830844_2831849_+|IS481-like-element-ISPfr15-family-transposase
MTHANAPLTPAGRLRLAACIVDDGWPLRRAAERFQVSPATAKRWADRYRAGQPLIDHSSRPAHSPNRLSRRTEHRIVGLRFTRRWGPHRIAYHLHIPRSTVGRVLERYHMPVLANTDQATGLPVRRPDPVRYEKQAPGDLIHVDIKKQGRIPDGGGWRAFGRGSVQDRTARAAGDRAARAGAPASRGYRYLHHAVDDHSRVAYSEICDDEKKETAAGFMTRALTFFESIGVAVKAVMTDNGACYRSRVFSQVLDDAKIGHKWTRPYRPQTNGKVERFNRSLAAEWAYARDYTSETEREAAYTEWLHHYNHHRPHTGIGGQTPSERVHNLTGKYS
>NZ_CP040635.1|WP_010552309.1|2832797_2833616_-|AAA-family-ATPase
MSQRFIVTKEHRRFTEFADAVRRGHTIGLCFGSAGVGKTLSARRYAHYEKAHDLLTYWGPRSDNDAKIYAALNRSRTVLYTPSVLTTPRTLKDELTQAITRTNMCIEQHLVPPGTATPEAWGWRHGRNYVELIIVDEAERLRPAALELLRDRYDRDGIALILIGMPGLEKQFSHYPQFYSRVGFAHQYRPLGQDELLFVLERHWRSLGKTLDPDDFTDAQAIAAIARITRGNFRLLERLFPQIQRVLKINELDTITNDVIEAAQSTLVIGVT
>NZ_CP040635.1|WP_138680731.1|2833612_2835010_-|DDE-type-integrase/transposase/recombinase
MDARARWRILRLHVEDQVPLARLARETDVGLRTLERWHARYRADGYAGLETASRADTGSRRLPPDLVHLIEGLALSKPRPVIATIHRKVTGICAARRWPVPSYSVVWDIVRTLDPGMVTLALEGAASYRDKHELVLRRQAELPNAMWQSDHTMLDILVVGTDGKPARPWLTTILDDCSRAVCGYTVFLGAPSAMNTALALRQAIWHKTDPAWPMCGLPDVLYVDHGSDFTSDQLAHTAVDLHIRLIHSTVARPQGRGKIERFFGTINTELLATLPGLITEGHPWPTPKLSLAALDSALEAFVATYNDRTHSELGTSPRSAWIADGWLPRMPESLEDLDRLLLTVAKTRVVRRDGIRFQGLRYVSPTLAGYVGRSVVIRYDPRDITEIRVFDHDEFVCKAVNQEHHDQKVSLKEIQAARNARRRALRAGINERIALVAAPTETPRITEAPAPAPRSALKIYKEDLR
>NZ_CP040635.1|WP_010534181.1|2835017_2835614_-|recombinase-family-protein
MSPLKVGYARVSTDEQDLTAQRDGLAAFGVDPKRIYVDHGLTGRNADREGLRQALAACRDGDTFVVTKLDRLARSVRDAHQIADDLAAREVKLSIAGSVYDPTDPMGKLLFNVLAMVAEFEADLIRARTREGMKVAKAKGRLRGKSPKLTPRQEAHLVQLHAADEHTVGELAELFSVGRSTVYRALQRAERGRENALQ
>NZ_CP040635.1|WP_006590980.1|2835807_2836167_+|winged-helix-turn-helix-transcriptional-regulator
MLTIASRLDVMNRLGRALADPTRSRIILTLLDHPAYPAELARDLDLTRPNVSNHLACLRDCGIVVSEPEGRRTRYEIADSHLAQALTALVDATLAVDEDAPCIDPACSLPGCDAAGEGA
>NZ_CP040635.1|WP_015070590.1|2836163_2836766_+|permease-cadmium-resistance-protein
MILTSVLQAMGLFAATNIDDIIVLSLFFARGAGQRGTTARILAGQYLGFAGILGAAVLVTIGAGAFLPSAAIPYFGLIPLGLGLWAAWQAWRGDDDDDDDEAKVAGKKVGVWTVAGVTLANGGDNIGVYTPVFLGVEPLAVVAYCIVFLALVAVLVALAKFVATRPPIAEVLERWEYILFPIVLIGLGIVILVSGGAFGL
>NZ_CP040635.1|WP_138680732.1|2836880_2837438_+|recombinase-family-protein
MQKPRHQANEATQNPARQLEAIGQVDRLFTEKISARTTDRPKLQAMLAYVRSGDVVKVKSPDRLARSTTDLLTLVNQLKNKDVQIQFIDQPALNTDSPQGEFMLTILGAVAQLERATIRERQAEGIALARARGVYDRAPKLSADQIEQARRRIADGVTKARVARDLNVSRQTLYTALAGRGRYLQ
>NZ_CP040635.1|WP_138680733.1|2837510_2838329_-|hypothetical-protein
MNSASKTGGIDLTSLEKSWMNLEKCYEKVRRVDSNYRAGVVFTKRRFEEASDPGERLYFQAAGLLAVAYDHQQALQDMMRSAIHPFSVWSLIRPAFEAAFHVVWILDPDDSQERMRRGLRLAGDELRSRKARDKAGKKVMGGQRNKDVQRRERRNQELGKKFEKEAQALHMGKNLIGKRVDPEKEFPKLESLRIDKVDGNYFYLAWRILSALQHGDMNAVAEVSDISKVIKIPGGWQTSTTVNDDVLISMMQLSMLMQITAIKLYIGRTTSN
>NZ_CP040635.1|WP_138680951.1|2838405_2842680_-|DEAD/DEAH-box-helicase
MPARDRRVQTPTTPWILKSRFASHDRGQWISACGTGKTFTSLKLAERRCAGNGGHLRVLFLAPSISLVSQSLREWLAQSQTPIRPFVVCSDTKASRQAEDITVHDIPLPTTDPDRLVAEMAAGGRRGKQMTVIFSTYQSIDVVARAQKQSGAGPFDLILCDEAHRTTGVTLAGDTGESAFIKVHDNTYLPAIKRLYMTATPRIYGTDVKKKADDAAAVLTSMDDEAMFGPVFHRLGFGQAVERGLLSDYKVMILAVANDAIDPDMQASLASEGHEISLDDAAKIVGCWNGLAKRTTDNDFGDHPTPMQRAVAFAANIKASKAFASALPQVVDQAITDDAVLQVDAHHVDGTMNALTRGEELAWLKAPVPEGECRILSNARCLAEGVDVPALDAVLFLSPRNSLVDVVQSVGRVMRKAPGKEYGYVILPVAIDASEEPSVALRDNKRFKVVWDVLNALRAHDDRFEAMINTIDLDHSTGGKVSIDVFSSHGGPADDDNRPEGQQPGTNPFAGTQPLLVGSDLWREAILGRIVKKCGQREYWESWADDVVRIHANQVRRITGIIASARHAGAPVAGQFDVFLDGLRANLNDSIDAAQAVDMISQHLITRPVFEALFPAGSFADRNPVSITMGRMATALAGYGLAAETVQLDRFYDSVRRRAAQIRTPEGRQTVIHQLYEQFFRKAFPAQSSSLGVVYTPVPIVDFILRAADQVCRDQFGYGITDPGVHVQDPFTGTGTFIVRLLQSGIIAPADLVRKYAGELWANEYMLLAYYIAAVNIETTYQALVAAQQPDHPVDYVPFPGATLTDTFQITEDGDRVDTSLIPVNNQRIEAQLAAPIKVIVGNPPYSAGQDSANDNNANLSYPTLDGRIAATYAAQSTATNKNNLYDSYIRAFRWATDRLGDQGVVAFVTNNGWLDGNTADGIRKTFQTEFSDIWVYNLRGNMRRSDWKQEGGQIFKGGSQTGIAVLIAAKNPHQTGCHIHYHGVPDYQSREDKLDDITDATLTTTTWTTITPNDDGDWLNQRNPTFQTFMPIADEPLAMFTSHSAGVQTNRDAWCYNFSHKAVEANMSRMIDYYNQQVNEAISGRDLSNDPTQISWSRNIRRMAEKGRSQAYDPSHLRTEAIYRPFTKEAVYFDPVFNSVPGKNAAYFPTPTHDNIGIAVIAPRPGTEFVALATDQLPDLSLFTYMAQFFPRWTYERADSGDQDVLPAPGDTVDEYGYRRVDNITDQALKAYRDAFGLQVSKDDIFYYVYAVLHSQQYRTAFAADLKRMLPRIPLAGSRDDFDEFVAAGRKLANLHIGYETVEPYPLSEQHSDDTTGPEAYRVQKMRWKDKTTKKTLIYNSHITLDDIPEAASQYMLGSRSALEWLIDRYQVKPDKTSGIVNDPNQWADEHHAPRYIIDLIKRVTRVSVDTMRIVSSLPKLPL
>NZ_CP040635.1|WP_138680734.1|2842628_2843954_-|ISL3-family-transposase
MHDATVGGRADAFASPDLTAFCRLDELGLVVTGQRLEPDRAVLACQVVEPDQWCRRCGCEGRPRDTVVRRLAHEPLGWRPTTLEVVVRRYRCSGCGYVWRQDTTAAAEPRAELSRRALRWALEGIVVRHLSVARVAEGLGVAWDTAHDAVLAEGKRVLIDEEHRFEGVKVVGVDEHVWRHTRRGDRYVTVIIDLTPVRDGTGPARLLDMVEGRSKQAFKTWLADRPQEWRDGVEVVAMDGFTGFRTAAVEELPDVVTVLDPFHVTRLAGEALDECRRRVQQAICGHRGRKGDPLYAARRTLSTGADLLNDKQKDRLDTLFADDAHVEVEVTWSVYQRMIAAYRHENRRHGRELMARLIDSISTGVPKALVEIRLGRTLKKRAADVLAYFDRPSTSNGPTEAINGRLEHLRGSALGFRNLTNYIARSLLETGGFRPRLHPGS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040635_6	6.1\|1209539\|25\|NZ_CP040635\|CRISPRCasFinder	1209539-1209563	25	AP021850	Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome	363226-363250	4	0.84
NZ_CP040635_6	6.1\|1209539\|25\|NZ_CP040635\|CRISPRCasFinder	1209539-1209563	25	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	29774-29798	4	0.84
NZ_CP040635_6	6.1\|1209539\|25\|NZ_CP040635\|CRISPRCasFinder	1209539-1209563	25	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	450634-450658	4	0.84
NZ_CP040635_10	10.1\|2830620\|28\|NZ_CP040635\|CRISPRCasFinder	2830620-2830647	28	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	69884-69911	4	0.857
NZ_CP040635_10	10.1\|2830620\|28\|NZ_CP040635\|CRISPRCasFinder	2830620-2830647	28	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1097435-1097462	4	0.857
NZ_CP040635_10	10.1\|2830620\|28\|NZ_CP040635\|CRISPRCasFinder	2830620-2830647	28	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	545233-545260	4	0.857
NZ_CP040635_10	10.1\|2830620\|28\|NZ_CP040635\|CRISPRCasFinder	2830620-2830647	28	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	1007900-1007927	4	0.857
NZ_CP040635_10	10.1\|2830620\|28\|NZ_CP040635\|CRISPRCasFinder	2830620-2830647	28	NZ_CP013526	Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence	758895-758922	5	0.821
NZ_CP040635_10	10.1\|2830620\|28\|NZ_CP040635\|CRISPRCasFinder	2830620-2830647	28	NZ_CP039965	Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence	1478164-1478191	6	0.786
NZ_CP040635_10	10.1\|2830620\|28\|NZ_CP040635\|CRISPRCasFinder	2830620-2830647	28	NZ_CP038257	Microbacterium sediminis strain YLB-01 plasmid unnamed, complete sequence	26145-26172	6	0.786
NZ_CP040635_2	2.1\|402452\|34\|NZ_CP040635\|CRISPRCasFinder	402452-402485	34	MT522006	Gordonia phage BBQValindra, complete genome	13713-13746	9	0.735
NZ_CP040635_7	7.1\|1556839\|35\|NZ_CP040635\|CRISPRCasFinder	1556839-1556873	35	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	1418675-1418709	9	0.743
NZ_CP040635_2	2.1\|402452\|34\|NZ_CP040635\|CRISPRCasFinder	402452-402485	34	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	822517-822550	10	0.706
NZ_CP040635_7	7.1\|1556839\|35\|NZ_CP040635\|CRISPRCasFinder	1556839-1556873	35	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	685915-685949	10	0.714

1. spacer 6.1|1209539|25|NZ_CP040635|CRISPRCasFinder matches to AP021850 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome) position: , mismatch: 4, identity: 0.84

ccgccgagcggggccggtccagcgg	CRISPR spacer
gggccgggcggggccggaccagcgg	Protospacer
  ****.********** *******

2. spacer 6.1|1209539|25|NZ_CP040635|CRISPRCasFinder matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.84

ccgccgagcggggccggtccagcgg	CRISPR spacer
cctccgagcggggccggtccactgt	Protospacer
** ****************** .*

3. spacer 6.1|1209539|25|NZ_CP040635|CRISPRCasFinder matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.84

ccgccgagcggggccggtccagcgg	CRISPR spacer
tcgccgagcggggcctgcccagcgt	Protospacer
.************** *.******

4. spacer 10.1|2830620|28|NZ_CP040635|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 4, identity: 0.857

cggccatgcacggggcggcctcgcgctc	CRISPR spacer
aggccatgaacggcgcggcctcgcgcgc	Protospacer
 ******* **** ************ *

5. spacer 10.1|2830620|28|NZ_CP040635|CRISPRCasFinder matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 4, identity: 0.857

--cggccatgcacggggcggcctcgcgctc	CRISPR spacer
gacggc--tgcacgtggcggcctcgcgctt	Protospacer
  ****  ****** **************.

6. spacer 10.1|2830620|28|NZ_CP040635|CRISPRCasFinder matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 4, identity: 0.857

--cggccatgcacggggcggcctcgcgctc	CRISPR spacer
gacggc--tgcacgtggcggcctcgcgctt	Protospacer
  ****  ****** **************.

7. spacer 10.1|2830620|28|NZ_CP040635|CRISPRCasFinder matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 4, identity: 0.857

cggccatgcacggggcggcctcg-cgctc	CRISPR spacer
cggccatgcgccgggcggcctcgatgct-	Protospacer
*********.* *********** .***

8. spacer 10.1|2830620|28|NZ_CP040635|CRISPRCasFinder matches to NZ_CP013526 (Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence) position: , mismatch: 5, identity: 0.821

cggccatgcacggggcggcctcgcgctc	CRISPR spacer
cagagatgaacggggcggcctcacgctc	Protospacer
*.*  *** *************.*****

9. spacer 10.1|2830620|28|NZ_CP040635|CRISPRCasFinder matches to NZ_CP039965 (Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

cggccatgcacggggcggcctcgcgctc	CRISPR spacer
tcgccatgcacggggcggctttgcgcat	Protospacer
. *****************.*.**** .

10. spacer 10.1|2830620|28|NZ_CP040635|CRISPRCasFinder matches to NZ_CP038257 (Microbacterium sediminis strain YLB-01 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.786

cggccatgcacggggcggcctcgcgctc	CRISPR spacer
cgtccatgcacggggcgccctcgtcgac	Protospacer
** ************** *****.   *

11. spacer 2.1|402452|34|NZ_CP040635|CRISPRCasFinder matches to MT522006 (Gordonia phage BBQValindra, complete genome) position: , mismatch: 9, identity: 0.735

cggctgaggcccgccccgcagaccatgccgccca	CRISPR spacer
cgagcgccgccagccccgccgaccatgccgccgc	Protospacer
**. .*  *** ******* ************

12. spacer 7.1|1556839|35|NZ_CP040635|CRISPRCasFinder matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 9, identity: 0.743

ggccgagccggcagcaccggcagcaccggtcattt	CRISPR spacer
ggtgaacacggccgcaccggccgcaccggtcatca	Protospacer
**. .*  **** ******** ***********.

13. spacer 2.1|402452|34|NZ_CP040635|CRISPRCasFinder matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 10, identity: 0.706

cggctgaggcccgccccgcagaccatgccgccca	CRISPR spacer
tcgaccaggcccgcgccgcagacgatgccggcat	Protospacer
. * . ******** ******** ****** *

14. spacer 7.1|1556839|35|NZ_CP040635|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.714

ggccgagccggcagcaccggcagcaccggtcattt	CRISPR spacer
cgagacgccggcagcaccggcagcacctgccacgc	Protospacer
 *  . ********************* *.**. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

592868 : 708094

Mycobacterium_phage(33.33%)

transposase,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138679835.1\|592868_596252_-\|tRNA	isoleucine--tRNA ligase	A0A2K9L9X8	Tupanvirus	2.0e-135	29.9
WP_138679836.1\|596546_597389_-	HAD family phosphatase	NA	NA	NA	NA
WP_138679837.1\|597388_598195_-	HAD family hydrolase	NA	NA	NA	NA
WP_138679838.1\|598410_599994_+	threonine/serine exporter family protein	NA	NA	NA	NA
WP_138679839.1\|600077_601427_+	MFS transporter	NA	NA	NA	NA
WP_027587574.1\|601532_601850_-	thiamine-binding protein	NA	NA	NA	NA
WP_138679840.1\|601944_602568_-	recombination protein RecR	NA	NA	NA	NA
WP_138679841.1\|602761_603091_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_138679842.1\|606461_606824_-	hypothetical protein	NA	NA	NA	NA
WP_138679843.1\|607127_607490_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
WP_138679844.1\|608026_608599_+	hypothetical protein	NA	NA	NA	NA
WP_138679845.1\|608917_609919_-	hypothetical protein	NA	NA	NA	NA
WP_138679846.1\|610306_611755_-	MHS family MFS transporter	NA	NA	NA	NA
WP_138679847.1\|611841_614391_+	malto-oligosyltrehalose synthase	NA	NA	NA	NA
WP_138679848.1\|615866_617165_+	acyltransferase	NA	NA	NA	NA
WP_138679849.1\|617312_619115_+	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA
WP_138679850.1\|619173_619659_+	VanZ family protein	NA	NA	NA	NA
WP_138679851.1\|619744_620389_+	VanZ family protein	NA	NA	NA	NA
WP_138679852.1\|620449_621262_-	hypothetical protein	NA	NA	NA	NA
WP_138679853.1\|621116_621743_-	hypothetical protein	NA	NA	NA	NA
WP_138679854.1\|621943_623617_+	polysaccharide biosynthesis tyrosine autokinase	NA	NA	NA	NA
WP_138679855.1\|623774_625271_+	sugar transferase	NA	NA	NA	NA
WP_138679856.1\|625828_627472_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_138679857.1\|628471_629566_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_138679858.1\|629648_630764_+	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA
WP_138679859.1\|630771_632196_-	coenzyme F420 hydrogenase	NA	NA	NA	NA
WP_138679860.1\|632192_633665_-	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_114179009.1\|635053_635251_+	hypothetical protein	NA	NA	NA	NA
WP_138679861.1\|635247_636279_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_138679862.1\|638135_638987_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_138679863.1\|638986_640153_+	glycosyltransferase	NA	NA	NA	NA
WP_138679864.1\|640262_641561_+	hypothetical protein	NA	NA	NA	NA
WP_138679865.1\|642029_643145_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_138679866.1\|643951_644842_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.2e-48	37.6
WP_138679867.1\|644832_645120_-\|transposase	transposase	NA	NA	NA	NA
WP_138679658.1\|645863_647123_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	2.1e-77	43.4
WP_138680823.1\|649347_649845_+	serine O-acetyltransferase	NA	NA	NA	NA
WP_138679865.1\|649898_651014_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_138679868.1\|651243_652575_-\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	4.9e-194	76.0
WP_138680824.1\|653777_653960_+\|transposase	transposase	NA	NA	NA	NA
WP_138679869.1\|654091_655195_+	LytR family transcriptional regulator	NA	NA	NA	NA
WP_138679870.1\|655301_655646_-\|transposase	transposase family protein	NA	NA	NA	NA
WP_048680651.1\|655548_656856_-\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	1.9e-187	72.4
WP_048769063.1\|657021_657651_-	hypothetical protein	NA	NA	NA	NA
WP_013350246.1\|657647_657986_-	PadR family transcriptional regulator	NA	NA	NA	NA
WP_138679871.1\|658109_658223_+\|transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	4.9e-07	70.3
WP_041649078.1\|658238_658463_+	hypothetical protein	A0A2H4PDF8	Mycobacterium_phage	2.0e-12	65.5
WP_138679872.1\|658434_658866_+\|transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	2.2e-26	62.5
WP_138679873.1\|659215_660289_+	glutathione S-transferase	NA	NA	NA	NA
WP_138679874.1\|660131_660938_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_138679875.1\|661012_661735_+	hypothetical protein	NA	NA	NA	NA
WP_138679876.1\|661847_662135_+	N-acetyltransferase	NA	NA	NA	NA
WP_015069011.1\|662228_662498_+	CopG family transcriptional regulator	NA	NA	NA	NA
WP_015069010.1\|662597_662876_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_138679877.1\|662872_663139_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5S8E8	Streptococcus_phage	1.9e-12	48.2
WP_138679878.1\|664044_664578_-	DNA starvation/stationary phase protection protein	NA	NA	NA	NA
WP_138679879.1\|664701_665391_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_015069004.1\|665579_665819_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_138679880.1\|665850_667860_+	cation-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	9.9e-82	35.1
WP_138679881.1\|667804_668293_+	DUF309 domain-containing protein	NA	NA	NA	NA
WP_044636494.1\|668315_668690_+	DUF488 family protein	NA	NA	NA	NA
WP_138680826.1\|668825_669896_+	hypothetical protein	NA	NA	NA	NA
WP_138680825.1\|669903_672642_+	multicopper oxidase domain-containing protein	NA	NA	NA	NA
WP_015068998.1\|672638_673268_+	ArsR family transcriptional regulator	NA	NA	NA	NA
WP_138679882.1\|673619_674420_+	ABC transporter permease	NA	NA	NA	NA
WP_138679883.1\|674402_675710_-\|transposase	ISL3-like element ISPfr1 family transposase	A0A2H4PDF8	Mycobacterium_phage	1.8e-169	68.3
WP_138679884.1\|676063_677242_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_097799942.1\|677853_679206_+	sugar transferase	NA	NA	NA	NA
WP_138679885.1\|679271_680210_+	NADP-dependent oxidoreductase	NA	NA	NA	NA
WP_138679886.1\|680354_680864_-	hypothetical protein	NA	NA	NA	NA
WP_138679887.1\|681062_681575_+	hypothetical protein	NA	NA	NA	NA
WP_138679888.1\|681498_682482_+	family 78 glycoside hydrolase catalytic domain	NA	NA	NA	NA
WP_138680827.1\|683616_684693_+	DUF1524 domain-containing protein	NA	NA	NA	NA
WP_126412670.1\|684794_685142_+	hypothetical protein	NA	NA	NA	NA
WP_138679889.1\|685584_687513_+	DUF222 domain-containing protein	NA	NA	NA	NA
WP_138679890.1\|687950_688823_-	glucose-1-phosphate thymidylyltransferase RfbA	H9NC64	Sphingomonas_phage	6.2e-89	54.9
WP_028703754.1\|688879_689878_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.3e-71	45.4
WP_138679891.1\|689874_691371_+	sugar nucleotide-binding protein	NA	NA	NA	NA
WP_028703756.1\|691597_692296_+	DUF3662 domain-containing protein	NA	NA	NA	NA
WP_028703757.1\|692298_692796_+	FHA domain-containing protein	NA	NA	NA	NA
WP_138679892.1\|692798_694328_+	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_138679893.1\|694324_695848_+	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA
WP_028703759.1\|695844_697275_+	cell division protein FtsI	NA	NA	NA	NA
WP_138679894.1\|697348_699151_+	Stk1 family PASTA domain-containing Ser/Thr kinase	A0A2P1EMR8	Moumouvirus	2.4e-18	31.8
WP_138679895.1\|699246_699885_-	C26 family cysteine hydrolase domain-containing family	A0A0P0IKJ1	Acinetobacter_phage	2.1e-49	45.6
WP_138679896.1\|700011_700884_-	DUF881 domain-containing protein	NA	NA	NA	NA
WP_028703762.1\|701023_701401_+	cell division protein CrgA	NA	NA	NA	NA
WP_138680828.1\|701543_703031_-\|tRNA	lysine--tRNA ligase	A0A2K9KZX5	Tupanvirus	3.1e-64	34.6
WP_138679658.1\|703594_704854_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	2.1e-77	43.4
WP_138679897.1\|705011_705947_-	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA
WP_138679658.1\|706834_708094_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	2.1e-77	43.4

DBSCAN-SWA_2

766168 : 776081

Mycobacterium_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_126412824.1\|766168_767476_+\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	8.5e-167	67.1
WP_138679922.1\|767458_768046_-	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_027587659.1\|768038_769304_-	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	1.9e-54	40.0
WP_138679923.1\|769383_770247_-	hypothetical protein	NA	NA	NA	NA
WP_138679924.1\|770363_772277_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	2.1e-20	26.2
WP_138679925.1\|772455_773820_+\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	3.8e-178	70.9
WP_138679926.1\|773926_774184_+	hypothetical protein	NA	NA	NA	NA
WP_028703602.1\|774623_774944_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	2.1e-26	54.6
WP_051238542.1\|775034_776081_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	1.7e-64	45.3

DBSCAN-SWA_3

1383101 : 1435992

Corynebacterium_phage(16.67%)

holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_097827156.1\|1383101_1383500_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_138680203.1\|1383690_1384491_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.4e-15	28.8
WP_138680204.1\|1384601_1385783_-	FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	4.7e-07	32.8
WP_138680205.1\|1386319_1387273_+	hypothetical protein	NA	NA	NA	NA
WP_138680206.1\|1387619_1388735_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_138680207.1\|1388797_1389613_-	hypothetical protein	NA	NA	NA	NA
WP_138680208.1\|1389685_1394488_-	DEAD/DEAH box helicase	A0A2H4UVA3	Bodo_saltans_virus	3.5e-32	23.6
WP_138680209.1\|1394888_1396217_+	reverse gyrase	NA	NA	NA	NA
WP_138680210.1\|1396541_1397882_-\|transposase	IS1380 family transposase	A0A222ZN33	Mycobacterium_phage	1.3e-117	52.5
WP_138680211.1\|1398029_1399298_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	9.7e-168	69.2
WP_138680212.1\|1399531_1400077_-	hypothetical protein	NA	NA	NA	NA
WP_138680213.1\|1400199_1401528_+	MFS transporter	NA	NA	NA	NA
WP_138680214.1\|1402042_1403335_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_138680215.1\|1403395_1404304_+	hypothetical protein	NA	NA	NA	NA
WP_138680216.1\|1404339_1405077_+	HD domain-containing protein	NA	NA	NA	NA
WP_138680217.1\|1405081_1406206_-	hypothetical protein	NA	NA	NA	NA
WP_138680218.1\|1406202_1409637_-	ATPase	NA	NA	NA	NA
WP_138680219.1\|1409633_1410392_-	DUF4194 domain-containing protein	NA	NA	NA	NA
WP_138680220.1\|1410375_1411944_-	DUF3375 domain-containing protein	NA	NA	NA	NA
WP_138680221.1\|1412003_1412600_-	DNA polymerase III subunit epsilon	A0A0R6PHP9	Moraxella_phage	5.9e-06	28.7
WP_138680222.1\|1412685_1413411_+	NAD-dependent protein deacylase	S5M4R0	Bacillus_phage	3.1e-25	31.1
WP_138680223.1\|1413571_1416778_+	sigma-70 family RNA polymerase sigma factor	G8CLC7	Synechococcus_phage	2.0e-23	30.8
WP_138680224.1\|1416740_1417358_-	nucleoside/nucleotide kinase family protein	NA	NA	NA	NA
WP_138680225.1\|1417431_1417986_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_138680226.1\|1418029_1419013_+	alpha/beta hydrolase	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	2.5e-22	29.0
WP_138680211.1\|1419256_1420525_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	9.7e-168	69.2
WP_097798246.1\|1421048_1421414_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_028702247.1\|1421476_1422295_-	peroxide stress protein YaaA	NA	NA	NA	NA
WP_138680227.1\|1422182_1423550_+	DUF2330 domain-containing protein	NA	NA	NA	NA
WP_138680228.1\|1423524_1424637_-	dipeptide ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.3e-18	30.9
WP_138680875.1\|1424623_1425583_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.8e-15	29.7
WP_138680229.1\|1425672_1426674_-	ABC transporter permease	NA	NA	NA	NA
WP_138680230.1\|1426666_1427590_-	ABC transporter permease	NA	NA	NA	NA
WP_138680231.1\|1427664_1429320_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_138680232.1\|1429526_1430090_-	hypothetical protein	NA	NA	NA	NA
WP_138680233.1\|1431704_1432250_+	AAA family ATPase	NA	NA	NA	NA
WP_138680234.1\|1432242_1433220_+	hypothetical protein	NA	NA	NA	NA
WP_138680235.1\|1433729_1434551_+	hypothetical protein	NA	NA	NA	NA
WP_138680236.1\|1434918_1435992_-\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

1565079 : 1693360

108

Bacillus_phage(14.81%)

capsid,protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138680888.1\|1565079_1566063_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_126412760.1\|1566194_1567238_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_028702145.1\|1567234_1568038_+	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	5.6e-28	35.1
WP_002550589.1\|1568266_1568368_+	AURKAIP1/COX24 domain-containing protein	NA	NA	NA	NA
WP_084149205.1\|1568444_1568747_+	glutaredoxin family protein	NA	NA	NA	NA
WP_097798327.1\|1569031_1570669_+	bifunctional uroporphyrinogen-III C-methyltransferase/uroporphyrinogen-III synthase	NA	NA	NA	NA
WP_097798328.1\|1570798_1571521_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_138680287.1\|1571517_1572087_+	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_138680889.1\|1572161_1572893_+	cytochrome C biogenesis protein	NA	NA	NA	NA
WP_138680288.1\|1572999_1574559_+	cytochrome c biogenesis protein ResB	NA	NA	NA	NA
WP_097798331.1\|1574555_1575485_+	c-type cytochrome biogenesis protein CcsB	NA	NA	NA	NA
WP_138680289.1\|1575499_1577041_+	hypothetical protein	NA	NA	NA	NA
WP_097798333.1\|1577075_1577897_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_138680290.1\|1577941_1579825_-	sodium:proton antiporter	NA	NA	NA	NA
WP_097799772.1\|1579767_1581285_-	threonine ammonia-lyase, biosynthetic	NA	NA	NA	NA
WP_036980512.1\|1583587_1584322_-	DUF5134 domain-containing protein	NA	NA	NA	NA
WP_036980509.1\|1584470_1585889_+	mycothione reductase	A0A2K5B2C5	Erysipelothrix_phage	9.9e-36	27.5
WP_138680291.1\|1585929_1586892_-	siderophore-interacting protein	NA	NA	NA	NA
WP_138680292.1\|1586888_1587827_-	ABC transporter ATP-binding protein	A0A1V0SJ29	Klosneuvirus	6.0e-05	24.5
WP_138680890.1\|1587823_1588768_-	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_028702133.1\|1588857_1589934_-	iron ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	1.5e-12	24.1
WP_138680293.1\|1589930_1591193_-	iron-siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_138680294.1\|1591340_1593362_+	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	4.4e-13	32.9
WP_138680295.1\|1593358_1595098_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.5e-17	25.2
WP_028702130.1\|1595171_1595342_-	50S ribosomal protein L32	NA	NA	NA	NA
WP_028702129.1\|1595346_1595652_-	30S ribosomal protein S14	NA	NA	NA	NA
WP_028702128.1\|1595651_1595822_-	50S ribosomal protein L33	NA	NA	NA	NA
WP_028702127.1\|1596105_1596351_+	type B 50S ribosomal protein L31	NA	NA	NA	NA
WP_138680296.1\|1596831_1597107_-	50S ribosomal protein L28	NA	NA	NA	NA
WP_138680297.1\|1597530_1598307_-	phosphate ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.9e-12	31.4
WP_097798342.1\|1598353_1599373_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_097798343.1\|1599369_1600413_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_138680891.1\|1600547_1601705_-	phosphate ABC transporter substrate-binding protein PstS	NA	NA	NA	NA
WP_028702121.1\|1601934_1602846_-	NUDIX hydrolase	NA	NA	NA	NA
WP_097798344.1\|1602842_1604990_-	RNA degradosome polyphosphate kinase	NA	NA	NA	NA
WP_051238075.1\|1605128_1605827_-	response regulator transcription factor	W8CYM9	Bacillus_phage	1.8e-14	29.1
WP_138680298.1\|1606010_1606499_+	hypothetical protein	NA	NA	NA	NA
WP_028702118.1\|1606572_1607628_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_028702117.1\|1607690_1609172_-	MFS transporter	NA	NA	NA	NA
WP_138680299.1\|1609327_1609765_-\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_097827291.1\|1609761_1609992_-	hypothetical protein	A0A1V0SKJ6	Klosneuvirus	2.2e-09	64.9
WP_028702115.1\|1610207_1610705_+	FABP family protein	NA	NA	NA	NA
WP_028702114.1\|1610701_1611670_+	folate-binding protein YgfZ	NA	NA	NA	NA
WP_138680300.1\|1611701_1613114_+	sugar transferase	NA	NA	NA	NA
WP_138680301.1\|1613157_1613703_-	isochorismatase family protein	NA	NA	NA	NA
WP_138680302.1\|1613887_1615174_-	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_126412762.1\|1615298_1616408_-	SH3 domain-containing protein	NA	NA	NA	NA
WP_028702111.1\|1616596_1618459_-	translational GTPase TypA	E4ZFJ7	Streptococcus_phage	4.6e-25	29.0
WP_138680303.1\|1618676_1619849_+	MFS transporter	NA	NA	NA	NA
WP_126412763.1\|1619854_1620352_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_138680304.1\|1620916_1622560_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_138680305.1\|1622955_1624263_-\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	5.0e-167	67.1
WP_138680306.1\|1625103_1625502_+	hypothetical protein	NA	NA	NA	NA
WP_138680307.1\|1626327_1627083_+\|transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	3.8e-95	76.6
WP_138680308.1\|1627044_1627509_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_138679867.1\|1627613_1627901_+\|transposase	transposase	NA	NA	NA	NA
WP_138680309.1\|1627891_1628782_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	9.2e-48	37.6
WP_097827575.1\|1628903_1630277_+\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_138680310.1\|1630627_1631935_+\|transposase	ISL3-like element ISPfr1 family transposase	A0A2H4PDF8	Mycobacterium_phage	5.3e-169	67.8
WP_138680311.1\|1631917_1632208_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_138680312.1\|1632703_1635772_+	DUF4981 domain-containing protein	L0N6M2	Herpes_simplex_virus	6.7e-138	32.5
WP_138680313.1\|1635794_1637183_+	MFS transporter	NA	NA	NA	NA
WP_013160161.1\|1637228_1638224_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	1.6e-40	33.2
WP_138680314.1\|1638466_1639777_+\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	3.3e-195	76.6
WP_138679867.1\|1640579_1640867_+\|transposase	transposase	NA	NA	NA	NA
WP_138680022.1\|1640857_1641748_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.9e-48	38.0
WP_138680315.1\|1641920_1643564_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_028703985.1\|1644569_1644797_+	hypothetical protein	NA	NA	NA	NA
WP_097828426.1\|1644789_1645125_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_084149559.1\|1645259_1645448_-	hypothetical protein	NA	NA	NA	NA
WP_138680316.1\|1645558_1647178_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_028703982.1\|1647209_1647473_-	metal-sensitive transcriptional regulator	NA	NA	NA	NA
WP_097798355.1\|1647635_1648247_+	DUF3151 domain-containing protein	NA	NA	NA	NA
WP_036982728.1\|1648275_1649121_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_028703981.1\|1649312_1650599_+	adenylosuccinate synthase	A0A2L2DKW2	Acanthamoeba_polyphaga_mimivirus	3.0e-63	33.8
WP_138680317.1\|1650579_1651548_-	EamA family transporter	NA	NA	NA	NA
WP_138680892.1\|1651671_1653015_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_138680318.1\|1653097_1654531_+	adenylosuccinate lyase	NA	NA	NA	NA
WP_097798359.1\|1654518_1655442_-	hydrogen peroxide-inducible genes activator	NA	NA	NA	NA
WP_138680319.1\|1655459_1657040_-	alkyl hydroperoxide reductase subunit F	G3MA85	Bacillus_virus	1.8e-33	28.5
WP_028703977.1\|1657165_1657729_-	peroxiredoxin	NA	NA	NA	NA
WP_028703976.1\|1657912_1659100_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0M4JBD3	Mollivirus	1.1e-43	35.2
WP_097828417.1\|1659101_1659779_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_084149560.1\|1659903_1661292_+	amino acid permease	NA	NA	NA	NA
WP_097798362.1\|1661311_1662310_+	asparaginase	NA	NA	NA	NA
WP_084149558.1\|1663874_1665290_+	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_138680320.1\|1665486_1666395_+	methylmalonyl Co-A mutase-associated GTPase MeaB	NA	NA	NA	NA
WP_127822681.1\|1666461_1667466_+\|transposase	IS481-like element ISPfr15 family transposase	NA	NA	NA	NA
WP_138680321.1\|1667688_1669947_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	5.6e-267	61.8
WP_138680322.1\|1672393_1673137_+	hypothetical protein	NA	NA	NA	NA
WP_051238659.1\|1673133_1673937_+	slipin family protein	A0A0U2UF06	Niemeyer_virus	1.3e-24	28.3
WP_028703969.1\|1674054_1675413_+	dipeptidase	NA	NA	NA	NA
WP_028703968.1\|1675673_1676966_+	MFS transporter	NA	NA	NA	NA
WP_097798368.1\|1676997_1678518_+	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	5.8e-42	28.0
WP_138680323.1\|1678514_1679660_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.7e-57	40.0
WP_028703966.1\|1679770_1679980_+	DUF3073 domain-containing protein	NA	NA	NA	NA
WP_138680324.1\|1680028_1680979_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_028703964.1\|1681169_1682486_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_028703963.1\|1682609_1683506_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_138680325.1\|1683505_1684402_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_138680326.1\|1684589_1686068_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_138680327.1\|1686081_1687074_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_138680328.1\|1687066_1688134_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	4.1e-10	28.5
WP_097798371.1\|1688130_1688865_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.0e-15	26.5
WP_138680329.1\|1689009_1689492_-	hypothetical protein	NA	NA	NA	NA
WP_097798373.1\|1689619_1690927_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_138680330.1\|1691804_1692035_-	hypothetical protein	NA	NA	NA	NA
WP_138680331.1\|1692511_1693360_-\|capsid	phage major capsid protein	NA	NA	NA	NA

DBSCAN-SWA_5

2169079 : 2231579

Planktothrix_phage(14.29%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138680494.1\|2169079_2169970_+\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_097828148.1\|2170016_2170943_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA
WP_028702362.1\|2171094_2171358_+	30S ribosomal protein S15	NA	NA	NA	NA
WP_138680495.1\|2171586_2172216_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_097798620.1\|2172212_2172992_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.1e-36	38.9
WP_138680496.1\|2173144_2175808_+	ABC transporter permease	NA	NA	NA	NA
WP_126412802.1\|2176078_2178280_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
WP_138680497.1\|2178454_2178949_-	hypothetical protein	NA	NA	NA	NA
WP_138680915.1\|2179073_2180834_+	hypothetical protein	NA	NA	NA	NA
WP_138680498.1\|2180824_2181463_+	response regulator transcription factor	NA	NA	NA	NA
WP_028702369.1\|2181584_2182325_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_051238106.1\|2182332_2183253_+	DUF2993 domain-containing protein	NA	NA	NA	NA
WP_097828142.1\|2183382_2185122_+	pyruvate dehydrogenase	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	2.6e-22	23.2
WP_138680499.1\|2185169_2185721_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_097798630.1\|2185876_2187565_+	ribonuclease J	NA	NA	NA	NA
WP_028702373.1\|2187695_2187881_+	50S ribosomal protein L28	NA	NA	NA	NA
WP_138680500.1\|2187927_2190231_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA
WP_028702375.1\|2190331_2190754_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_138680501.1\|2190891_2191488_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_028702377.1\|2191484_2191958_+	pantetheine-phosphate adenylyltransferase	NA	NA	NA	NA
WP_028702378.1\|2192098_2192674_+	DUF177 domain-containing protein	NA	NA	NA	NA
WP_028702379.1\|2192777_2192969_+	50S ribosomal protein L32	NA	NA	NA	NA
WP_097828140.1\|2192968_2193739_+	ribonuclease III	J2YAN1	Acanthamoeba_polyphaga_lentillevirus	1.2e-16	28.1
WP_138680502.1\|2193731_2194628_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	F8WPX6	Bacillus_phage	7.7e-18	28.5
WP_138680916.1\|2194630_2195215_+	GtrA family protein	NA	NA	NA	NA
WP_097798637.1\|2195335_2195578_+	hypothetical protein	NA	NA	NA	NA
WP_138680917.1\|2195672_2196866_+	signal recognition particle-docking protein FtsY	D6PHS7	uncultured_phage	6.0e-18	41.4
WP_138680503.1\|2196871_2197990_+	glycosyltransferase	NA	NA	NA	NA
WP_036980856.1\|2198051_2198348_+	EamA family transporter	NA	NA	NA	NA
WP_126412804.1\|2198257_2198680_+	EamA family transporter	NA	NA	NA	NA
WP_028702383.1\|2198707_2200546_+	hypothetical protein	NA	NA	NA	NA
WP_138680918.1\|2200560_2201703_+	hypothetical protein	NA	NA	NA	NA
WP_138680504.1\|2201771_2203358_+	signal recognition particle protein	NA	NA	NA	NA
WP_138680505.1\|2203359_2204550_+	amidohydrolase family protein	NA	NA	NA	NA
WP_028702387.1\|2204737_2205148_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_028702388.1\|2205149_2205404_+	RNA-binding protein	NA	NA	NA	NA
WP_028702389.1\|2205494_2206043_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_138680919.1\|2206058_2206754_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_084149226.1\|2206845_2207535_+	succinate dehydrogenase cytochrome b subunit	NA	NA	NA	NA
WP_097798645.1\|2207534_2209559_+	fumarate reductase/succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA
WP_028702393.1\|2209555_2210329_+	succinate dehydrogenase/fumarate reductase iron-sulfur subunit	NA	NA	NA	NA
WP_138680506.1\|2210670_2212023_+	hypothetical protein	NA	NA	NA	NA
WP_028702395.1\|2212137_2212491_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_097799821.1\|2212826_2213489_+	signal peptidase I	NA	NA	NA	NA
WP_028702397.1\|2213509_2214124_+	ribonuclease HII	NA	NA	NA	NA
WP_028702398.1\|2214120_2214429_+	DUF2469 domain-containing protein	NA	NA	NA	NA
WP_138680507.1\|2214569_2215070_+	YraN family protein	NA	NA	NA	NA
WP_138680508.1\|2215066_2216593_+	YifB family Mg chelatase-like AAA ATPase	NA	NA	NA	NA
WP_138680509.1\|2216505_2217753_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_138680510.1\|2217765_2218329_-	hypothetical protein	NA	NA	NA	NA
WP_138680511.1\|2219773_2222074_+	AAA family ATPase	A0A2H4IYY2	uncultured_Caudovirales_phage	7.0e-39	25.7
WP_097828128.1\|2222104_2222707_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_138680920.1\|2222975_2224231_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_138680512.1\|2224398_2225088_-	hypothetical protein	NA	NA	NA	NA
WP_097827575.1\|2225938_2227312_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_138680513.1\|2227496_2227784_+\|transposase	transposase	NA	NA	NA	NA
WP_138680514.1\|2227750_2228605_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.8e-32	35.9
WP_138680515.1\|2228563_2229367_-\|transposase	transposase	NA	NA	NA	NA
WP_138680516.1\|2229935_2231579_-\|transposase	IS1634 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

2893391 : 2940685

Streptococcus_phage(12.5%)

protease,transposase,tRNA,integrase

attL 2901372:2901388|attR 2945454:2945470

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_051238461.1\|2893391_2893946_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_036981908.1\|2893942_2894932_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
WP_051238463.1\|2894978_2895281_-	hypothetical protein	NA	NA	NA	NA
WP_036981911.1\|2895312_2896518_+	AMP-binding protein	NA	NA	NA	NA
WP_084149428.1\|2896420_2897767_+	isochorismate synthase	NA	NA	NA	NA
WP_138680755.1\|2897821_2899453_-	ABC-F family ATP-binding cassette domain-containing protein	A0A1B0RXA0	Streptococcus_phage	2.7e-21	22.8
WP_138680756.1\|2899615_2901307_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA
WP_138680757.1\|2901299_2902304_-	o-succinylbenzoate synthase	NA	NA	NA	NA
2901372:2901388	attL	NA	NA	NA	NA
WP_036981916.1\|2902330_2904184_-	elongation factor 4	A0A2K9L6L3	Tupanvirus	2.8e-22	41.0
WP_028703426.1\|2904340_2904607_+	30S ribosomal protein S20	NA	NA	NA	NA
WP_138680953.1\|2904807_2905833_-	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_028703428.1\|2905859_2907569_-	DEAD/DEAH box helicase family protein	I4AZM6	Saccharomonospora_phage	2.4e-52	33.9
WP_138680758.1\|2907670_2910046_-	ComEC/Rec2 family competence protein	NA	NA	NA	NA
WP_071161742.1\|2910032_2910671_-	ComEA family DNA-binding protein	NA	NA	NA	NA
WP_028703431.1\|2911113_2913600_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	1.2e-182	41.2
WP_028703432.1\|2913687_2914734_-	DUF4192 family protein	NA	NA	NA	NA
WP_051238465.1\|2914874_2915477_+	hypothetical protein	NA	NA	NA	NA
WP_028703434.1\|2915568_2916831_-	DUF3459 domain-containing protein	NA	NA	NA	NA
WP_138680759.1\|2916996_2919003_+	cadmium-translocating P-type ATPase	A0A218MNH6	uncultured_virus	3.0e-54	30.7
WP_028703435.1\|2919064_2919472_+	DUF1801 domain-containing protein	NA	NA	NA	NA
WP_036981921.1\|2919659_2920481_+	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_036981923.1\|2920480_2921152_+	thiamine phosphate synthase	NA	NA	NA	NA
WP_097799041.1\|2921160_2921820_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_138680760.1\|2921818_2923288_+	L-lactate permease	NA	NA	NA	NA
WP_028703438.1\|2923306_2924440_-	ADP-ribosylglycohydrolase family protein	NA	NA	NA	NA
WP_036981955.1\|2924549_2925332_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_051238469.1\|2925377_2926382_+	ATP-binding cassette domain-containing protein	W5SAS9	Pithovirus	1.9e-17	31.0
WP_097799043.1\|2926384_2927206_+	ABC transporter permease	NA	NA	NA	NA
WP_138680761.1\|2927417_2928725_+\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	7.4e-187	72.3
WP_138680762.1\|2928824_2929604_+	hypothetical protein	NA	NA	NA	NA
WP_138680763.1\|2929600_2931091_+	ATP-binding protein	NA	NA	NA	NA
WP_028703042.1\|2931256_2931862_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_036981550.1\|2931854_2932580_+	hypothetical protein	NA	NA	NA	NA
WP_051238303.1\|2932615_2933482_+	EamA family transporter	NA	NA	NA	NA
WP_028703044.1\|2933822_2934728_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_138680954.1\|2934798_2935917_+	MFS transporter	NA	NA	NA	NA
WP_138680764.1\|2935866_2936649_-	hypothetical protein	NA	NA	NA	NA
WP_138679867.1\|2936677_2936965_+\|transposase	transposase	NA	NA	NA	NA
WP_138680765.1\|2937018_2937366_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_138680766.1\|2937367_2937847_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	5.9e-33	45.4
WP_138680767.1\|2937829_2939209_-	hypothetical protein	NA	NA	NA	NA
WP_028703048.1\|2939268_2939595_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_051238288.1\|2939602_2940685_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
2945454:2945470	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040635

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection