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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP040634 Acidipropionibacterium acidipropionici strain FAM 19036 chromosome, complete genome 5 crisprs DEDDh,csa3,WYL,cas3,DinG 0 1 3 0

Results visualization

1. NZ_CP040634
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040634_1 1161799-1161906 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040634_2 2092505-2092645 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040634_3 2651456-2651560 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040634_4 2813355-2813493 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040634_5 2938096-2938173 Orphan NA
1 spacers
csa3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP040634_5 5.1|2938121|28|NZ_CP040634|CRISPRCasFinder 2938121-2938148 28 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 69884-69911 4 0.857
NZ_CP040634_5 5.1|2938121|28|NZ_CP040634|CRISPRCasFinder 2938121-2938148 28 NZ_CP049317 Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence 1097435-1097462 4 0.857
NZ_CP040634_5 5.1|2938121|28|NZ_CP040634|CRISPRCasFinder 2938121-2938148 28 NZ_CP049157 Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence 545233-545260 4 0.857
NZ_CP040634_5 5.1|2938121|28|NZ_CP040634|CRISPRCasFinder 2938121-2938148 28 NC_017958 Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence 1007900-1007927 4 0.857
NZ_CP040634_5 5.1|2938121|28|NZ_CP040634|CRISPRCasFinder 2938121-2938148 28 NZ_CP013526 Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence 758895-758922 5 0.821
NZ_CP040634_5 5.1|2938121|28|NZ_CP040634|CRISPRCasFinder 2938121-2938148 28 NZ_CP039965 Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence 1478164-1478191 6 0.786
NZ_CP040634_5 5.1|2938121|28|NZ_CP040634|CRISPRCasFinder 2938121-2938148 28 NZ_CP038257 Microbacterium sediminis strain YLB-01 plasmid unnamed, complete sequence 26145-26172 6 0.786

1. spacer 5.1|2938121|28|NZ_CP040634|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 4, identity: 0.857

cggccatgcacggggcggcctcgcgctc	CRISPR spacer
aggccatgaacggcgcggcctcgcgcgc	Protospacer
 ******* **** ************ *

2. spacer 5.1|2938121|28|NZ_CP040634|CRISPRCasFinder matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 4, identity: 0.857

--cggccatgcacggggcggcctcgcgctc	CRISPR spacer
gacggc--tgcacgtggcggcctcgcgctt	Protospacer
  ****  ****** **************.

3. spacer 5.1|2938121|28|NZ_CP040634|CRISPRCasFinder matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 4, identity: 0.857

--cggccatgcacggggcggcctcgcgctc	CRISPR spacer
gacggc--tgcacgtggcggcctcgcgctt	Protospacer
  ****  ****** **************.

4. spacer 5.1|2938121|28|NZ_CP040634|CRISPRCasFinder matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 4, identity: 0.857

cggccatgcacggggcggcctcg-cgctc	CRISPR spacer
cggccatgcgccgggcggcctcgatgct-	Protospacer
*********.* *********** .*** 

5. spacer 5.1|2938121|28|NZ_CP040634|CRISPRCasFinder matches to NZ_CP013526 (Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence) position: , mismatch: 5, identity: 0.821

cggccatgcacggggcggcctcgcgctc	CRISPR spacer
cagagatgaacggggcggcctcacgctc	Protospacer
*.*  *** *************.*****

6. spacer 5.1|2938121|28|NZ_CP040634|CRISPRCasFinder matches to NZ_CP039965 (Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

cggccatgcacggggcggcctcgcgctc	CRISPR spacer
tcgccatgcacggggcggctttgcgcat	Protospacer
. *****************.*.**** .

7. spacer 5.1|2938121|28|NZ_CP040634|CRISPRCasFinder matches to NZ_CP038257 (Microbacterium sediminis strain YLB-01 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.786

cggccatgcacggggcggcctcgcgctc	CRISPR spacer
cgtccatgcacggggcgccctcgtcgac	Protospacer
** ************** *****.   *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2228561 : 2282918 58 Mycobacterium_phage(23.53%) integrase,capsid,portal,protease,transposase,head attL 2223723:2223740|attR 2270976:2270993
DBSCAN-SWA_2 2924685 : 2959448 21 Corynebacterium_phage(16.67%) transposase NA
DBSCAN-SWA_3 3223530 : 3232426 9 Brucella_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage