CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040709	Inhella inkyongensis strain IMCC1713 chromosome, complete genome	4 crisprs	DEDDh,WYL,csa3,Cas9_archaeal,DinG,cas3,cas5,cas8c,cas7,cas4,cas1,cas2	0	18	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040709_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040709_1

921567-921665

Orphan

Consensus_repeat	Method
ATCCTGCTCGGGCCACGCTCAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040709_1

>merge|NZ_CP040709|1|921567-921665|CRISPRCasFinder
ATCCTGCTCGGGCCACGCTCAGCCCAGCCATGCAAGACATGGCAGGGCCTTCGCGAGGCGTCGCAGGGTCCTCAGGACCCTGCTCGGGCCACGCTCAGC

>NZ_CP040709|1|1|921567-921665|CRISPRCasFinder
ATCCTGCTCGGGCCACGCTCAGC	CCAGCCATGCAAGACATGGCAGGGCCTTCGCGAGGCGTCGCAGGGTCCTCAGG
ACCCTGCTCGGGCCACGCTCAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040709.1\|WP_138855607.1\|933272_934115_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270228
NZ_CP040709.1\|WP_138855602.1\|926479_927790_-\|NAD-dependent-dihydropyrimidine-dehydrogenase-subunit-PreA	unknown	unknown	gnl\|CDD\|236237
NZ_CP040709.1\|WP_138855603.1\|927793_929155_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|236967
NZ_CP040709.1\|WP_138855608.1\|934140_935277_-\|class-A-beta-lactamase	unknown	unknown	gnl\|CDD\|185339
NZ_CP040709.1\|WP_138855596.1\|914034_914643_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP040709.1\|WP_138855591.1\|908644_909337_-\|TRAP-transporter-small-permease-subunit	unknown	unknown	gnl\|CDD\|225632
NZ_CP040709.1\|WP_138855593.1\|910619_912479_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|236901
NZ_CP040709.1\|WP_138855592.1\|909480_910491_-\|DctP-family-TRAP-transporter-solute-binding-subunit	unknown	unknown	gnl\|CDD\|270392
NZ_CP040709.1\|WP_138855606.1\|932307_933153_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP040709.1\|WP_138858287.1\|917553_919479_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369106
NZ_CP040709.1\|WP_138855594.1\|912475_913102_+\|response-regulator	unknown	unknown	gnl\|CDD\|226932
NZ_CP040709.1\|WP_138855597.1\|914812_915415_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374318
NZ_CP040709.1\|WP_138855609.1\|935167_936034_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176173
NZ_CP040709.1\|WP_138855605.1\|929968_932311_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP040709.1\|WP_138855600.1\|922887_924336_-\|dihydropyrimidinase	unknown	unknown	gnl\|CDD\|236240
NZ_CP040709.1\|WP_138858286.1\|915442_917434_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235540
NZ_CP040709.1\|WP_138855604.1\|929263_929908_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|274678
NZ_CP040709.1\|WP_138855595.1\|913061_913967_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|366166
NZ_CP040709.1\|WP_138855598.1\|919529_921416_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224561
NZ_CP040709.1\|WP_138855601.1\|924337_925753_-\|NCS1-family-nucleobase:cation-symporter-1	unknown	unknown	gnl\|CDD\|271378

Protein	Function_ID	Function_description	E-value
NZ_CP040709.1\|WP_138855607.1\|933272_934115_+\|hypothetical-protein	gnl\|CDD\|270228	cd01007, PBP2_BvgS_HisK_like, The type 2 periplasmic ligand-binding protein domain of the sensor-kinase BvgS and histidine kinase receptors, and related proteins. This family comprises the periplasmic sensor domain of the two-component sensor-kinase systems, such as the sensor protein BvgS of Bordetella pertussis and histidine kinase receptors (HisK), and uncharacterized related proteins. Typically, the two-component system consists of a membrane spanning sensor-kinase and a cytoplasmic response regulator. It serves as a stimulus-response coupling mechanism to enable microorganisms to sense and respond to changes in environmental conditions. The N-terminal sensing domain of the sensor kinase detects extracellular signals, such as small molecule ligands and ions, which then modulate the catalytic activity of the cytoplasmic kinase domain through a phosphorylation cascade. The periplasmic sensor domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	0.00195199
NZ_CP040709.1\|WP_138855602.1\|926479_927790_-\|NAD-dependent-dihydropyrimidine-dehydrogenase-subunit-PreA	gnl\|CDD\|236237	PRK08318, PRK08318, NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.	0
NZ_CP040709.1\|WP_138855603.1\|927793_929155_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|236967	PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional.	0
NZ_CP040709.1\|WP_138855608.1\|934140_935277_-\|class-A-beta-lactamase	gnl\|CDD\|185339	PRK15442, PRK15442, beta-lactamase TEM; Provisional.	5.06022e-51
NZ_CP040709.1\|WP_138855596.1\|914034_914643_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.88692e-06
NZ_CP040709.1\|WP_138855591.1\|908644_909337_-\|TRAP-transporter-small-permease-subunit	gnl\|CDD\|225632	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism].	4.01132e-23
NZ_CP040709.1\|WP_138855593.1\|910619_912479_+\|PAS-domain-S-box-protein	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	1.84066e-48
NZ_CP040709.1\|WP_138855592.1\|909480_910491_-\|DctP-family-TRAP-transporter-solute-binding-subunit	gnl\|CDD\|270392	cd13674, PBP2_TRAP_SBP_like_1, Uncharacterized substrate-binding protein of the Tripartite ATP-independent Periplasmic transporter family; the type 2 periplasmic-binding protein fold. This subfamily includes uncharacterized periplasmic substrate-binding proteins similar to TRAP transport systems such as SiaP (a sialic acid binding virulence factor) and TeaA (an ectoine binding protein). TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process and a smaller membrane of unknown function. The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.39669e-155
NZ_CP040709.1\|WP_138855606.1\|932307_933153_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.69586e-32
NZ_CP040709.1\|WP_138858287.1\|917553_919479_-\|hypothetical-protein	gnl\|CDD\|369106	pfam06848, Disaggr_repeat, Disaggregatase related repeat. This family consists of several repeats which seem to be specific to the Methanosarcina archaea species and are often found in multiple copies in disaggregatase proteins. Members of this family are also found in single copies in several hypothetical proteins. This repeat is also known as DNRLRE repeat and is predicted form a mainly beta-strand structure with two alpha-helices [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16]. It is found in some cell surface proteins.	0.00351922
NZ_CP040709.1\|WP_138855594.1\|912475_913102_+\|response-regulator	gnl\|CDD\|226932	COG4566, TtrR, Response regulator [Signal transduction mechanisms].	9.90078e-66
NZ_CP040709.1\|WP_138855597.1\|914812_915415_+\|hypothetical-protein	gnl\|CDD\|374318	pfam16036, Chalcone_3, Chalcone isomerase-like. Chalcone_3 is a family of largely bacterial members.	1.52025e-23
NZ_CP040709.1\|WP_138855609.1\|935167_936034_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176173	cd08484, PBP2_LTTR_beta_lactamase, The C-terminal substrate-domain of LysR-type transcriptional regulators for beta-lactamase genes, contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators, BlaA and AmpR, that are involved in control of the expression of beta-lactamase genes. Beta-lactamases are responsible for bacterial resistance to beta-lactam antibiotics such as penicillins. BlaA (a constitutive class A penicillinase) belongs to the LysR family of transcriptional regulators, while BlaB (an inducible class C cephalosporinase or AmpC) can be referred to as a penicillin-binding protein, but it does not act as a beta-lactamase. AmpR regulates the expression of beta-lactamases in many enterobacterial strains and many other gram-negative bacilli. In contrast to BlaA, AmpR acts an activator only in the presence of the beta-lactam inducer. In the absence of the inducer, AmpR acts as a repressor. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.65199e-81
NZ_CP040709.1\|WP_138855605.1\|929968_932311_+\|PAS-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.04589e-35
NZ_CP040709.1\|WP_138855600.1\|922887_924336_-\|dihydropyrimidinase	gnl\|CDD\|236240	PRK08323, PRK08323, phenylhydantoinase; Validated.	0
NZ_CP040709.1\|WP_138858286.1\|915442_917434_-\|hypothetical-protein	gnl\|CDD\|235540	PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated.	6.38149e-08
NZ_CP040709.1\|WP_138855604.1\|929263_929908_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|274678	TIGR03613, RutR, pyrimidine utilization regulatory protein R. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the TetR family of transcriptional regulators defined by the N-teminal model pfam00440 and the C-terminal model pfam08362 (YcdC-like protein, C-terminal region).	1.52101e-43
NZ_CP040709.1\|WP_138855595.1\|913061_913967_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	1.16382e-07
NZ_CP040709.1\|WP_138855598.1\|919529_921416_-\|hypothetical-protein	gnl\|CDD\|224561	COG1647, COG1647, Esterase/lipase [General function prediction only].	0.000179432
NZ_CP040709.1\|WP_138855601.1\|924337_925753_-\|NCS1-family-nucleobase:cation-symporter-1	gnl\|CDD\|271378	cd11485, SLC-NCS1sbd_YbbW-like, uncharacterized nucleobase-cation-symport-1 (NCS1) transporter subfamily, YbbW-like; solute-binding domain. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. This subfamily includes the putative allantoin transporter Escherichia coli YbbW (also known as GlxB2). NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	0

>NZ_CP040709.1|WP_138855598.1|919529_921416_-|hypothetical-protein
MSIRRWWPAWVLGLLLVAAGLWWANQPNPTPTSDCLGTQTLGDGLQRQPGARRLTSVLHAFTGQPQDMRSLVCSLREAAPSDVWVPKLPFSSTSRAQPADVLAQLVSQLDKHWLQGNAQGQAYEELVIVGHSLGSLFARKLYVLGRGGSALGPSLAEPGLDAALRAAGGAPLLAARPWALATRRIVLMAGINRGWTVSHHMDLGHGLLYGAGVTLARWAQAAGTDPFIVMAGHRGAAFLSQLRLQWLALSQLAAADQQGLAKVVQLLGTRDDLVPPSDNVDPLNDFVYLEVPNSGHRDVIDMAASDSIPEAWARQRREVFQRALGDAPTSDLHPARPHQQGDANVRHVIFVIHGIRDQGFWTERVAHRVQAELLKTPECQALPPGARCVAQEVSSYGYFPMLSFLQPGARQQKVEWLMDRYTEAKARFPQARFSYVGHSHGSYLLKEAMRDYPAVRFERVLLAGSVLRSDQRWHDWLDQGRIGQLLNLTADADWVVALFPNGLEALQLQDLGGAGHHGFSDQHPRLLRLPQSKHLHGGHGAGVEEAAWPLIARFIAGGQVETGPAPLADRHAPLTRWGAPLAPAVWVLGPLLLLWGLMKLLRSRLREWIKTVAVLGYLGLIWGVLTQV
>NZ_CP040709.1|WP_138858287.1|917553_919479_-|hypothetical-protein
MVQGGALSLLGCGGGGDATAPAAFEPKLAGASSSGPNAARRAAWAAEDAPAGRAPYRSAQPLLFQGTAWALIPPRIPGGRERRTQAGPNAEFVDRYVGWRWDRMGGDWLDAQGQRWGSQPWASMVTATGPLTLVKRYEADLTNLLQAVQKQNRWCALMLRTRGVARKIGGLFSGDDRQPSLWVRYIDGSEAWLACTLSAPAITSLPQAALSELPLPAFLEFERPAQAVLSARLVLTIVQHSSGASAIEVMLADPPLNRDSILQGVAQTAGRTDENILQARGIIGAQRYPDGGLLEDYVVPGLTNTYASREFDPALWGGTPDTTKLPHRHLGKFVTANIDNWATLVDSSFRGEGFQPLVPGMGALRMFMPKQVSQDGEVVGYSGTGAANASIFMPEPLFGRLPRIFVRYYFRLGTPEGDRYVRNSKDRLQVYKEAGQKGPEWEDWGGKFGLMPDHTSTYGGTTGSSGGGGGWQMRLAWQDSDSDTNGPNDGGIRPGFHLFDFGVKQPASHNYSGDNADKTMWGQRGGLGGILYANQWYCIETELKLNTVMDAAPGYVADGELRAWLDGRLVFERTGMVFRSKPLALGGIPNNPAEMPPVRDLGVRALWMNWYHGGVVKNSLPRSMFMTALAYGTEYIGPMQF
>NZ_CP040709.1|WP_138858286.1|915442_917434_-|hypothetical-protein
MPSRRSVLLQGGALGLIGCGGGGSSEPAASPSVPPPAPAPAPAPSPSPAPAPAPTPVPPPAPAPLPLPGEVSPYRSRQSLLFQGTAWSVIPARIAGGAERRALVGPTAEFVDRYVGWTWDRAGGDWLDANGVRWGNQGWAGIVTDSGPLDLVKRYEVDLTTLIRKVQTERRWCAFILRPLGVARKMAGLWAGGERIPTLMVRYTDGSQASLACTLTAPVISGLPQATLAELPMPAFIEFAPPTKAVQSATLALTVVQHSGGSASTIAVMLADPPLNRDPVQQGVAQSAGGLDVNILQARGIIGAQRYPDGGRLEDYVAAPGSGTINTYASREFDPALWGGTPDTTKLPHRHLGKFVTANIDNWATLVDSSFRGEGFQPLVSGMGALRMFMPKQVSQDGEVVGYSGTGAANASIFMPEPLFGRLPRIFVRYYFRLGTPEGDRYVRNSKDRLQVYKEAGQKGPEWEDWGGKFGLMPDHTSTYGGTTGSSGGGGGWQMRLAWQDSDSDTNGPNDGGIRPGFHLFDFGVKQPASHNYSGDNADKTMWGQRGGLGGILYANQWYCIETELKLNTVMDAAPGYVADGELRAWLDGRLVFERTGMVFRSKPLALGGIPNNPAEMPPVRDLGVRALWMNWYHGGVVKNSLPRSMFMTALAYGTEYIGPMQF
>NZ_CP040709.1|WP_138855597.1|914812_915415_+|hypothetical-protein
MPTAVLRPLLALAALAVSGTLPAAVQAQEAVRIESATFEPHVLMVGHKLRLNGAGLNGSNKGNAAGLYLVKWARSTAEALEAPGPRRLQIRFIEPQEGKAFGAALSGALRANVPAQELPDCLPGLLRLGELLATRKTLAAGDDLNLDFIPGQGTFVDVKGQRIGQIDSKPFYGCLLRAYLGDKPMDGSLKTALLAAGKTK
>NZ_CP040709.1|WP_138855596.1|914034_914643_-|TetR-family-transcriptional-regulator
MEAKTERSELTLQAIVDTALQMALAEGLESLSMGELAKRLSLSKSGVFSRVGSREALQVAVIQEYDRRFLQAVFTPAMREPRGLARLNSVLQLWLRRAGDPDPAQGCLYCAGAFEYDDREGPVRVQLLEGVMRWRAALRRTVQQAQETGELRADLDPMQLVFEIDALVTGLQRDARFLRDSSATTRALRAWDRLIQASLPQP
>NZ_CP040709.1|WP_138855595.1|913061_913967_-|alpha/beta-fold-hydrolase
MHTRPLKPPALGHNPAAMFFTAPPARALAGLLRSLDRWAPSFSTRMAMGLFFTPLPTKWPARARALPAGWQVERLPFEGGSLAVWRRLDTRPQAPRVLLVHGWAGDASQMLRQAEALAAQGLEPILVDLPAHGRSSAWRSNLGQWVRALFTVSARFGPWQGVVAHSLGGLATAHALARGLPAQAAALIALAPPPRQFLSWFGAAMGVGEGLAERMQQRIERRLGVRMSEFEASWLAPRLRQPILLVHDRDDRTAPWHYSQGLQAQLPGSRLQLTQGQGHRRVLDHIEVLSAVAAHLQRPAS
>NZ_CP040709.1|WP_138855594.1|912475_913102_+|response-regulator
MSEPAVFLVDDEAAVRDALAFLLGSRGLRVHSFASGPEFLAHLNSLAKAPAGVFLLDVRMEPMNGLRLHDELLARKLHNPVLFLSGHGDIPMVVEALKKGAFDFLEKPYGDNRLVDRIEQALAVAEAMHQQGAQAAERAARLASLTEREHEVLLRVAMGKLNKVVADELCIAVRTVEVHRARGLAKLGLRSAAELASWLVAANELPRR
>NZ_CP040709.1|WP_138855593.1|910619_912479_+|PAS-domain-S-box-protein
MHPALPLPRRSTLLWLSPLVLACLFAAAVMGWAVWDERRERETERQTLITDTLSAVNGLRAQLAQEQQALAALARTLAERPTALLQAQPEVEQGLRSIWSGLVWLDAEHRVRAEVVAPARSNEGRSLHLQQSVGAPEVQGRLVLRYSPALLLRQAVPWWLTRRYDVQLIDADEQAIAALSHAPGGLRAEHRPSYRVALDDSQPEAQLELIVREPAPSGLRPLVGVLIAGFLPLSALASWGLRRQLRRTAQAEARWKGEAAWRAAVEDSALVGLRARDGQGRLLSVNRTFCEIVGWPAEELLGRAPPMPYWPLDALDEVKQRSDRNLAGRAPREGYEARWRHRSGREIDVLVFETPLVDAGGQQIGWLGTILDITERKRLAEREQRQLEALAQTARLTMLGEVASTLAHELNQPLTAIASYNTGVMNSLQRLGVQDPPVLAALQRLGEQAAQAGRVVQRIRHFLTRHEPQIEACALNPVLQAALGLLAKELTQREVQVELALAADLPAVRADAVLVEQVAINLLRNAADALREQTGPRRIVLSSAMGAGCVWVSVCDNGLGLQGRSAETLFAPFYSTKAEGMGMGLAICRSIVEAHQGVLSAEPAPEGGACFRFNLPVMS
>NZ_CP040709.1|WP_138855592.1|909480_910491_-|DctP-family-TRAP-transporter-solute-binding-subunit
MLATTRRLLILSAALLAGGSALAQAPIVIKFSHVVANDTPKGKAADFFAKRAAELTGGKVKVEVYANSTLYKDKEEMEALQLGAVQMLAPSLAKFGPLGAKEFEVFDLPFIFDNYAELHKVTQGPVGQMLLSKLEGRGVKGLAFWDNGFKSFSANKPLKNVDDFKGVKMRIQSSKVLEAQMRAIGVLPQQMAFSEVYQALQTGVVDGTENPHSNLFTQKMHEVQKHVSVSDHGYLGYAVISNKKFWDGLPADVRGKLEQAMKESTEYANKIAKEENEAALEKVKASGKSQVYAMSPAERLALKKAMTKVHAEMASRIGQDVINAVYKETGFDPSKL
>NZ_CP040709.1|WP_138855591.1|908644_909337_-|TRAP-transporter-small-permease-subunit
MRILDHLEEGLIAFLIGAATLIIFAAVLHRYLSGLAIPGVQDWLLALNFGWAQELCIIMFVWMAKFGAAYGVRTGIHVGVDVLINRLNPTLRNKFVVLGLLAGALFTGIVATLGATFVWENGAHYAFYKAAGLGIEGMFEGPTTPDLEWPTWIVYSAIPLGSSLMCFRFLQVTVAFLRTGDLPHHDHGHVDGLDDSEDPAQPGQLDQIFRMDDNLHPKVDDLAQAPEEKR
>NZ_CP040709.1|WP_138855600.1|922887_924336_-|dihydropyrimidinase
MTALLIRGATVVNADREFAGDVLCVDGVIAAVGERAAREAPAGCQVLDGSGQYLMPGGIDPHTHMQLPFMGTVTMDDFFTGTAAGLAGGTTSIIDFVIPNPQQPLMEAYRTWRGWAEKSSADYSFHVAVTWWNEGVSRDMGTLVTEEGVNSFKHFMAYKNAIMCDDETLVNSFRRALELGAMPTVHAENGELVYLLQQEVAKMGITGPEGHPLSRPPMVEGEAANRAIAIADVLGVPIYIVHVSCIEAAEAIARARARGQRVYGEVLAGHLLIDDSVYRDKDFARAAAHVMSPPFRPKIHQDFLWRGLQAGSLHTTATDHCTFCAQQKAAGIEHFAKIPNGCGGIEERLAVIWDAGVNTGRLTPSEFVAITSANTAKLFNLYPRKGVITEGADADLVLWDPQGTKTISAKTQHSKGDFNIFEGRTVKGIPSHTIAQGRVVFAHGDLRAEAGRGRYLKRPAFGPNFQAVTKRTQDLAPSAVSR
>NZ_CP040709.1|WP_138855601.1|924337_925753_-|NCS1-family-nucleobase:cation-symporter-1
MTESANSLANEDLLPTTAAQRHWSAKDYAALWVGMVICVPTYTMASSMLDQGFSWQQAIWLVFIANCIVLAPMLLIGHAGAKYGIPFPVLARASFGVKGANLPAVLRGLVACGWFSINCYFGGLALHGLLNTLGFALAGPAAGETISASQFACFMAFWALHLVFIWRGLESIRLLEVVAAPLMILASIGLVVWAFMNVSPSQIFSLPAKVVEGGPKTWAALTGLVGFWATLALNIPDFTRFAKNQREQMTGQAIGLPLPMALFSLVGVIGFSVSQILYGKAQLFPDGLLTQMGPLAAGIGLVVILLANLTTNVAANLVSPSYDFSLLAPDKISFRMGGLIAAGIGLLFMPWKLLATSGAYLFTWLGGYGTLLGAIAGILLVDYYGVRKATLKVDELYQRGGAYEYANGWNGRAVIAFVLGVLPCLPGYLAVSGVIAKDGLPPLLLGLFDFGWFFSLGVAGLIYFLTAKRDH
>NZ_CP040709.1|WP_138855602.1|926479_927790_-|NAD-dependent-dihydropyrimidine-dehydrogenase-subunit-PreA
MADISSNFLGIKSPNPFWLASAPPTDKEINVVRAFEAGWGGVVWKTLGEDPPVVNVNGPRYSTLLGPDRRVLGLNNIELISDRPLQVNLDEIRRVKRAWPDRAMVVSLMVPLDEQAWKRILVQVEDTGADGVELNFGCPHGMSERGMGSAVGQVPEYIERITGWCKTHTKLPVIVKLTPNITDVRYPARAAKAGGADAVSLINTINSVMGVDLERMVMNPVTDGWGSHGGYCGPAVKPIALNMVAEIARDATTAGLPISGIGGITTWRDAAEFIAMGCGTVQVCTAAMVYGFKIVQDLCDGLSNFMDEQGYKTLDDFKGRAVPSVKNWNQLNLNYVEKAVINQDSCIQCGRCHVVCEDTSHQAIFAMKDGRRHFEVNEAECVGCNLCVSICPVPNTITMRRVAPGEVDLRTGAVVSGEYANWTTHANNPMRSGCGS
>NZ_CP040709.1|WP_138855603.1|927793_929155_-|FAD-dependent-oxidoreductase
MNPSDPTRCGLHAHRLPEAAYAQNFADAHPTLTPQQAQIEAERCLYCYDAPCQTACPTGIDVPSFIARIAQGNVRGAARAILEANPLGGMCARVCPTEVLCEQACVKNASEHKAVEIGALQRFATDAYFAKPGAALFTRAAATGKKVAVVGSGPAGLACAHGLARQGHEVVIFEARPKGGGLNEYGLATYKTAGGFAQQELDWLLSIGGIELRCGQKIGRDITLSGLLDDFDAVFLGLGLGGVNALGLNEPPLTGLRDAVDFIAELRQNDPKTVAVGRRVVVIGGGMTAVDAAVQSKLLGAEEVSIVYRRGAESMSASEVEQQWALQHGVTIRHWAAPAALLSADGAVTGMRFARTALEGGKLVQTGGEFELQADMVLRAIGQTLGQTLEGAPAGIELQGGRIKTDEMGRTSRAGVWAGGDCRFGGRDLTVEAVEHGKQAALSIHADLMKQGA
>NZ_CP040709.1|WP_138855604.1|929263_929908_+|TetR-family-transcriptional-regulator
MSALMPLERPVRAPRAARIEKLQLILQAAETQFARYGFEGVSLETIASELGLSRQNLLYYYPSKEALYDAVLDDVLASWLAGMSRIGQATDPEQAIRDYVAAKLRFSQERPSGSAVFTREVMAGAPRYAERLRAQVLPVLRADVQAFERWADHGLIRRLDFTHLMFLLWASTQAYADLAPQFALLLGKPALESQDYKAAQALITEMLLTALKPI
>NZ_CP040709.1|WP_138855605.1|929968_932311_+|PAS-domain-containing-protein
MDESSPSSPPPPHRAPGGRWRDRGLLLLTLVFGLGVSALGHGSMRDAEALRQQERSSAAAREIVSQVERELTRTVEAVRNAGLMVQSHDQLPRGSFVRYAQQLAVALPPISLLEWQPVVQQADRETFEREARAQGLAHYRIVEPDASQTQWSPAPVRDHYVPVLFAWPEADAPLGYNLAPDAMRMASKLQSARLGRPVASVSFPLIKRAIQGPAIKGFAISTAVKAHGPDAPEAVRGYLAAVIELPALLQAVGEQAQRAHMNLWVFEGDEPRGALLYTNRPAQQPATTGAALTLERRHTVNVAERSWSLLLQPQDAFLGRADRQAQGLLVLGLLATALLTYALWRAQRERAAAHASQETMRGERERLANVLDGTQAATWEADLIHRVYHVNTQWQRLGGHEPGSYRPGPDYHWEQDCHPEDIPRVRQALERHFKGEAERYEIEYRHRHLTRGWVWAQARGRLLARTPEGLPWIMAGTLLDIDARKAAEARILELNSTLEARVAERGAELERALEALRESREELAHADTRATLHTVMASAAHELQTPLGNSLICTQNLVDQTREFEGRLAAGDLRRSELRHFVDQVGDNASLAARNLARAAELVDRFRQVAADQGSEQRRVFDLATLVEELIDTLAPTQRRLPHRVECAIAPGIAMDSYPGPLGQVLINLINNANLHAFGPEQAGLLRIEAQPEADGVLMTVRDNGRGMDATTLKRLFEPYFSTRIGAGGTGLGMTIVDTLVRKTLGGQLAVHSEVGVGTVVTLRLPRRAPERPASNPAAS
>NZ_CP040709.1|WP_138855606.1|932307_933153_-|alpha/beta-fold-hydrolase
MRIAIEPHVRLFVDIEGLGWVPDGPRLREKPTLVLIHGGPGFDHTGFRPFFSQLADLAQIVYYDQRGHGRSDTRPASEWTLDTFADDVVRLCTALGIEKPIVLGQSFGGFVAQRYIERHPAHARAVILSSTSHHFGLARKNAWFERLGGPQAGAASAAFWGQPNAATWALYEQHCRHLYNTRPKDTDTSGWMVFRPEILFESAGGEQQTMDLRPGLAKAQCPVLVMAGEQDPVTPIEDAEEIVAALPAQWVRFHRFPGVGHGPWRDDPQTTLRVLREFIAA
>NZ_CP040709.1|WP_138855607.1|933272_934115_+|hypothetical-protein
MSPRSPRFASGIAGFLLMLAAGAHAGCSRELLVPVSAMGLMVTVQQDRVGGAFVELLNDVGRQAGCTFRFQPVPRARQEMLFLARRSDLLLPAQRTELRDPFGQHVALLQVRPTLVALRPLPQAVTTAASLIAEGSLRVAVLRGVDNGPAYRELQSQLKQRDRLVVEADVVGVVRALRDGLADAALMNPVILQGQLMQAEQAELRTLARQLSARPLAELDWQPSGIYLALEPLGGADRQLLAQALGSTGARQRLWRLLRERYPGPLLEAGYRPIPDGAAH
>NZ_CP040709.1|WP_138855608.1|934140_935277_-|class-A-beta-lactamase
MAAWVTHNSLAAWVKLKSRAAASKARRALSEKGCRFMRKTNTAPQKVSLARRDPHGKNPPPRQLPRGKSMNQIMGKRRQWLTTAAGLGLVGLTGMGGPARAATDAFSTAVAALEQQHGGRLGVALLDTASGAVSGHRLDERFALCSTFKLLLAAEVLRQSDQGRLRLHDWQAFGRTPWVPHAPVTQAHKKHGGMVLGALAEATQKTSDNMAANLLLRRLGGPAALTQALREQGDAVTRIDRWEPEMNRVPPGEVRDTTSPAAMARSAAHWVLGDVLKPASRTRLQRWMKDTETGLDRLRAGLPEAWVVGDKTGTGLHPSMPDQINDVAVIWPPGRTPWVLSAYYAAPAQGSDHIREDFKAVLAEVGRLAGRAIQAGAA
>NZ_CP040709.1|WP_138855609.1|935167_936034_+|LysR-family-transcriptional-regulator
MNLHPFSLNALRAFEAAARLLSFTQAAKELCVTQAAISHQIKTLEGQLGRALFLRGPRSLQLTDEGLLLAPALRAAFEAMAQALDRVREAGPPEVLSLGVVGTFAQGLLLERLGRFEALHPRIELRLQTHNNRMDPTSEALDATIRFGDGLWRSQAAVKLLDAPLSALCSPALAAGLTRPDELRGRTLLRSFRAGDWEAWGKVAGAGPLRARGPQFDSSVLMVQAALQGLGVALAPPRLFQRELRLGQLVQPFAATVDTGAYWLCRPSSRPASAALQAFETWLRTELG

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Crispr_ID: NZ_CP040709_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040709_2

1654312-1654448

Orphan

Consensus_repeat	Method
TTTTGCCTGCGGCGAAAAGCGCAACTCGCTCCGCTCGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040709_2

>merge|NZ_CP040709|2|1654312-1654448|CRISPRCasFinder
TTTTGCCTGCGGCGAAAAGCGCAACTCGCTCCGCTCGTGCCTTCGTTAGCAGGCTAACTCAGCCCTTTGATGAGACTTTGTGTCTCATCAATTGCCCTTTTTGCCTGCGGCGAAAAGGGCAACTCGCTCCGCTCGTG

>NZ_CP040709|2|2|1654312-1654448|CRISPRCasFinder
TTTTGCCTGCGGCGAAAAGCGCAACTCGCTCCGCTCGTG	CCTTCGTTAGCAGGCTAACTCAGCCCTTTGATGAGACTTTGTGTCTCATCAATTGCCCT
TTTTGCCTGCGGCGAAAAGGGCAACTCGCTCCGCTCGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040709.1\|WP_138856232.1\|1654467_1654926_-\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|235455
NZ_CP040709.1\|WP_138856228.1\|1650241_1650970_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379312
NZ_CP040709.1\|WP_138856238.1\|1661253_1661997_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366132
NZ_CP040709.1\|WP_138856235.1\|1656018_1656534_-\|DUF4124-domain-containing-protein	unknown	unknown	gnl\|CDD\|379230
NZ_CP040709.1\|WP_138856226.1\|1648612_1649746_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040709.1\|WP_138856230.1\|1651677_1653057_+\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	unknown	unknown	gnl\|CDD\|237838
NZ_CP040709.1\|WP_138856222.1\|1643370_1644111_-\|two-component-system-response-regulator-OmpR	unknown	unknown	gnl\|CDD\|181883
NZ_CP040709.1\|WP_138856239.1\|1663282_1664698_-\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
NZ_CP040709.1\|WP_138856233.1\|1654987_1655449_+\|type-II-toxin-antitoxin-system-RatA-family-toxin	unknown	unknown	gnl\|CDD\|176855
NZ_CP040709.1\|WP_138858323.1\|1662062_1663253_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|176459
NZ_CP040709.1\|WP_138856224.1\|1645066_1645933_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP040709.1\|WP_138858322.1\|1658216_1659434_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340946
NZ_CP040709.1\|WP_138856227.1\|1649756_1650188_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270371
NZ_CP040709.1\|WP_138856236.1\|1656653_1658120_+\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
NZ_CP040709.1\|WP_138856231.1\|1653061_1654231_+\|cystathionine-beta-lyase	unknown	unknown	gnl\|CDD\|180810
NZ_CP040709.1\|WP_138856225.1\|1645929_1648203_+\|RelA/SpoT-family-protein	unknown	unknown	gnl\|CDD\|223394
NZ_CP040709.1\|WP_138856237.1\|1659426_1661058_+\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP040709.1\|WP_138856234.1\|1655435_1655747_+\|RnfH-family-protein	unknown	unknown	gnl\|CDD\|377094
NZ_CP040709.1\|WP_138856223.1\|1644250_1645021_-\|3-hydroxybutyrate-dehydrogenase	unknown	unknown	gnl\|CDD\|237100
NZ_CP040709.1\|WP_138856229.1\|1651105_1651678_+\|polyhydroxyalkanoate-synthesis-repressor-PhaR	unknown	unknown	gnl\|CDD\|227682

Protein	Function_ID	Function_description	E-value
NZ_CP040709.1\|WP_138856232.1\|1654467_1654926_-\|SsrA-binding-protein-SmpB	gnl\|CDD\|235455	PRK05422, smpB, SsrA-binding protein SmpB.	1.68029e-80
NZ_CP040709.1\|WP_138856228.1\|1650241_1650970_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.15295e-24
NZ_CP040709.1\|WP_138856238.1\|1661253_1661997_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|366132	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.	2.69657e-09
NZ_CP040709.1\|WP_138856235.1\|1656018_1656534_-\|DUF4124-domain-containing-protein	gnl\|CDD\|379230	pfam13511, DUF4124, Domain of unknown function (DUF4124). This presumed domain is found in a variety of bacterial proteins. It is found associated at the N-terminus associated with other domains such as the SLT domain and glutaredoxin domains in some proteins. The function of this domain is unknown, but it may have an Ig-like fold.	2.75568e-08
NZ_CP040709.1\|WP_138858323.1\|1662062_1663253_-\|DNA-polymerase-IV	gnl\|CDD\|176459	cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kappa. Pol IV, also known as Pol kappa, DinB, and Dpo4, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Known primarily as Pol IV in prokaryotes and Pol kappa in eukaryotes, this polymerase has a propensity for generating frameshift mutations. The eukaryotic Pol kappa differs from Pol IV and Dpo4 by an N-terminal extension of ~75 residues known as the "N-clasp" region. The structure of Pol kappa shows DNA that is almost totally encircled by Pol kappa, with the N-clasp region augmenting the interactions between DNA and the polymerase. Pol kappa is more resistant than Pol eta and Pol iota to bulky guanine adducts and is efficient at catalyzing the incorporation of dCTP. Bacterial pol IV has a higher error rate than other Y-family polymerases.	4.11645e-126
NZ_CP040709.1\|WP_138856230.1\|1651677_1653057_+\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	gnl\|CDD\|237838	PRK14862, rimO, 30S ribosomal protein S12 methylthiotransferase RimO.	0
NZ_CP040709.1\|WP_138856222.1\|1643370_1644111_-\|two-component-system-response-regulator-OmpR	gnl\|CDD\|181883	PRK09468, ompR, osmolarity response regulator; Provisional.	1.09945e-151
NZ_CP040709.1\|WP_138856239.1\|1663282_1664698_-\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NZ_CP040709.1\|WP_138856233.1\|1654987_1655449_+\|type-II-toxin-antitoxin-system-RatA-family-toxin	gnl\|CDD\|176855	cd07813, COQ10p_like, Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	3.03443e-58
NZ_CP040709.1\|WP_138856224.1\|1645066_1645933_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	4.9643e-22
NZ_CP040709.1\|WP_138858322.1\|1658216_1659434_+\|MFS-transporter	gnl\|CDD\|340946	cd17388, MFS_TetA, Tetracycline resistance protein TetA and related proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of tetracycline resistance proteins similar to Escherichia coli TetA(A), TetA(B), and TetA(E), which are metal-tetracycline/H(+) antiporters that confer resistance to tetracycline by an active tetracycline efflux, which is an energy-dependent process that decreases the accumulation of the antibiotic in cells. TetA-like tetracycline resistance proteins belongs to the Eukaryotic Solute carrier 46 (SLC46)/Bacterial Tetracycline resistance (TetA) -like (SLC46/TetA-like) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.5761e-107
NZ_CP040709.1\|WP_138856227.1\|1649756_1650188_+\|hypothetical-protein	gnl\|CDD\|270371	cd13653, PBP2_phosphate_like_1, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily. This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.07904e-06
NZ_CP040709.1\|WP_138856236.1\|1656653_1658120_+\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
NZ_CP040709.1\|WP_138856231.1\|1653061_1654231_+\|cystathionine-beta-lyase	gnl\|CDD\|180810	PRK07050, PRK07050, cystathionine beta-lyase; Provisional.	4.2155e-139
NZ_CP040709.1\|WP_138856225.1\|1645929_1648203_+\|RelA/SpoT-family-protein	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0
NZ_CP040709.1\|WP_138856237.1\|1659426_1661058_+\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP040709.1\|WP_138856234.1\|1655435_1655747_+\|RnfH-family-protein	gnl\|CDD\|377094	pfam03658, Ub-RnfH, RnfH family Ubiquitin. A member of the RnfH family of the ubiquitin superfamily. Members of this family strongly co-occur in two distinct gene neighborhood contexts. In one it is associated with a START domain protein, a membrane protein SmpA and the transfer mRNA binding protein SmpB. This association suggests a possible role in the SmpB-tmRNA-based tagging and degadation system of bacteria, which is interesting given that other members of the ubiquitin system are analogously involved in protein-tagging and degradation across eukaryotes and various prokaryotes. The second context in which the RnfH genes are present is in a membrane associated complex involved in transporting electrons for various reductive reactions such as nitrogen fixation.	1.18549e-17
NZ_CP040709.1\|WP_138856223.1\|1644250_1645021_-\|3-hydroxybutyrate-dehydrogenase	gnl\|CDD\|237100	PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenase; Provisional.	1.05785e-141
NZ_CP040709.1\|WP_138856229.1\|1651105_1651678_+\|polyhydroxyalkanoate-synthesis-repressor-PhaR	gnl\|CDD\|227682	COG5394, COG5394, Uncharacterized protein conserved in bacteria [Function unknown].	1.26271e-51

>NZ_CP040709.1|WP_138856231.1|1653061_1654231_+|cystathionine-beta-lyase
MSDRKTAAELIHHPYQPPAGFAAPVQAVHKASSIFFKDVAELQRVRWADRDAYTYGLHGTPTTFALEARLASLEGANHVLLAPSGLAALNLVNQAFLKCGDQLLLPDNVYGPSRNAARHELANWGITHAIYDPLDPADLAAKLSPATRLVWLEAAGSVTLEFPDLTGLIAAVRANAPQALIALDHTWGAGLAFAPFELGVDLTIHALTKYPSGGGDVLMGSVGVRDRGLYEQLAAAHGRSGLGVGANDVELVLRGLATLPLRYAAQDAAARRVAAWAQTQTAVAQVLHPALPGSPGHEYWARHCTAAAGLLTLRFQPEWNRARVEAMADALKVFKLAWSWGGPVSLAVPYELAHIRSLHRNSGTVLRLAIGLEEPEVLIADLEQALESV
>NZ_CP040709.1|WP_138856230.1|1651677_1653057_+|30S-ribosomal-protein-S12-methylthiotransferase-RimO
MTDVVNAATTPKVGFVSLGCPKALTDSELILTQLSAEGYETSKTFAGADLVIVNTCGFIDDAVKESLDTIGEALAENGKVIVTGCLGAKQAADGANLVQQIHPKVLAVTGPHATQEVMDAVHLHLPKPHDPFMDLVPAAGIKLTPKHYAYLKISEGCNHRCSFCIIPSMRGDLVSRPVGDVLKEAKALFEGGLKELLVVSQDTSAYGVDVKYRTGFFDGRPVKTRMLDLVRELGELAKPYGAWVRLHYVYPYPHVDELLPLMNEGLVLPYLDVPFQHSHPDMLKRMKRPASGEKNLERLLRWREACPDLVVRSTFIAGFPGETEEEFEHLLNFVREAGIDRAGCFAYSPVEGASANQLPDQLPDALREERRARFMAVAEGVSVERLQRRVGQTLQVLVDSAPALGRKGGVGRSYADAPEIDGTVRLLPPEKASKTLKVGEFTRARVVAAEGHDLIAQPI
>NZ_CP040709.1|WP_138856229.1|1651105_1651678_+|polyhydroxyalkanoate-synthesis-repressor-PhaR
MVTRRRAAASDEAAPRGDGPAGPRILKKYPNRRLYDTQTSAYVTLHDVKAMVLAGQSFEVRDNKTGEDLTRAILLQIILEEETAGVPMFSTPMLEQIIRFYGQAMQGVLQDYLAKNLQTFTEMQARFTEHSGGVGLTPELWGQFMQGQAPMMQGLVGSYMEQSKNLFVQMQEQMAKGALFPGMPGFGKNK
>NZ_CP040709.1|WP_138856228.1|1650241_1650970_-|methyltransferase-domain-containing-protein
MKSPTPLNLERSRLAFVPETRFGLWFLSTATWRVHVLARALNDLQGLAPDLPQGGVVLDLGTGRGHSLLELAARFKPTLIHAADPDPDFEKRSAANARACPVPLQLHNAHAERLPLPDASVDLILCHQTLHHIVDQEAALAEMMRVLKPGGHLMLAESCRAYIHSWVIRYLFAHPMDVQRTAPEYLQMLRAAGFEVRPERVSTPYLWWSRSDLGAFEFFGRKVPEPGQREETLVNAVVRKPL
>NZ_CP040709.1|WP_138856227.1|1649756_1650188_+|hypothetical-protein
MNATKLVRILASLGLALSAFAVQAQVVVVVGAKSPTGNMTADQVSALFLGKSNALPSGAAAALVDQPEASPVYEQFYSKVAGKTTAQVKAAWSRLTFSGKATPPNRLASSADVKKFVAGNPDAIGYIEKSAVDASVKVILSAD
>NZ_CP040709.1|WP_138856226.1|1648612_1649746_+|hypothetical-protein
MFSFSGFGTAGLAKTNNDRAEYAMPGQLSGADDSVEGSVDTKLGLQLTAKFNPMFSATAQLLTKYNGKGNWEPNAEWAYFKAQFSPNWALRVGRMGLPAFAVSDFRDVGYSNLWVRPPLDVYGQVSLSNFEGADITYRTQMLGANVTAQAFAGRMRTTFRQIKLDGDDSFGFNLTAEYDNGLTIRLGHLESDLTVHFGSLDALVAGLRTASAQVPQAASVADQISAKGKLGTFSGVGLSYDQDNWILSAEYTWRRTETYISNTTGWYASAGYRVGNFTPYVVASELKLDSPHVKNTLPVTNVPSLEALRLGVNGVLAGQNVAQKTSAVGVRWDAYRNTAVKAQLERIRPQGGNGLFVNVKPGFSGATVLSLTVDFVF
>NZ_CP040709.1|WP_138856225.1|1645929_1648203_+|RelA/SpoT-family-protein
MKTAPADPQRAAIVALLHDEPAAQDLPKRLPGAEPQRAAPVLDVLNRARAFAEPLLAGRLLDTGEDQLSHADGVAAILAGIGASPGIQAAAYLVYASEHLSDPIEVTAKAFGAGYAELVEHTRKLVRIQRAARAAQLEAEAAQQQLERVRKMLLAFSKDLRVVLLRLASRLQTLRWYALVKQPCRVDVALEARQVFAPLANRLGIWQIKWELEDLAFRFLEPERYHALARALHEKRLERELRVHQARSQLMAELQRLGVTGEVQGRPKHLYSIWKKMQGKGLTLDRVFDLRALRVIVDSADECYAVLARLHEVYLPVEGEFDDYIARPKANGYQSLHTVLRGSDGQTMEVQIRTRAMHEHAEHGVAAHWAYKEAGAKGYGGQAVAGEQEASVREARKAVLRQLLAWERDLVESQGSAEQAGEEARIFVFTPQAAVVELCAGATPIDFAYQLHTELGHRIRGAKVDGQLVPLNTPLQSGQTVEVMGGKERGPSLDWLNAELGFLASARSRAKVRAWFNALASEETVARGRELVEKLLAREGRTAIKHDELAARLGFKSAEQLFEVVGKDEFSLKPIEQLLRPAEAEQQPSDDEMAARQHVRPASPETKRGGVLVVGVDSLLTSLARCCRPAPPDAIRGFVTRGKGVAIHRADCSNLRDSLSRAPEREIDVTWGNTQGRQYPVDLSVEAEDRPGVLRDVLEVFSKLKLRVSEAKTQSQRGSRPDTQWMAFTIEVGSAEALREALRSVAQVPGVRAARRR
>NZ_CP040709.1|WP_138856224.1|1645066_1645933_+|alpha/beta-fold-hydrolase
MTSPRLHHLQALSPGGLHRIAYREWGAADNPRVVVCVHGLTRQSCDFDALARRLAPEFRVICPDVVGRGDSGWLANPLHYGIPQYVADMVSLVARLDVEQVDWVGTSMGGLIGLGLAALPGSPVRRLVLNDVGPSLEWQALQRIGAYLGQAMVFDSVEEGAAQLRSISQGFGTFSEAEWLALSRPMFRASEQGVRLHYDPAIGQAFRALTPELAAAGEAQLWAAWAALSQPVLVLRGAQSDLLSAETAARMIQTGAQAQLLTLPEVGHAPMLDRAEQQDPVIEFLRQP
>NZ_CP040709.1|WP_138856223.1|1644250_1645021_-|3-hydroxybutyrate-dehydrogenase
MLNGKTALITGSTSGIGLGLALSLARQGANVMLNGFGDVEAARAQFEGLEIEVDYHGADMSRPDEVADLVQATEARFGACDILVNNAGIQHVAPIQDFPPERWDAILAINLSSAFHSIRAALPGMLAQGWGRIINVASVHGQVASVNKSAYVAAKHGLIGLTKAVALETATTGVTCNAICPGWVLTPLVQRQVDARALADGVDNAEASRRLLAEKQPSLAFTTPEELGALAQFLCSPAAGNVRGQAWGMDGGWTAQ
>NZ_CP040709.1|WP_138856222.1|1643370_1644111_-|two-component-system-response-regulator-OmpR
MSHAPNTRPQRIAVVDDDARIRDLLRRYLSQEGFEVLPAEDGQALARLMSRENLDLIVLDLMMPGEDGLSICRRLRAQGNRTPIVMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARINAVLRRAPAPEMPGAPSGTAERVMFGPYEFDLGLRRLSKEGVEQPLTTGEFAMLKALVRHPRQPLSRDKLAQLTRGRDFEPFDRSLDVQISRLRKMIEPDPAKPRYIQTVWGLGYVFVPDDAPAA
>NZ_CP040709.1|WP_138856232.1|1654467_1654926_-|SsrA-binding-protein-SmpB
MSIVENRRARFEYHLEEEYEAGMVLEGWEVKAIRAGQVQLTGSYVVVKDGELFLIGCQINPLGSASTHVRPEAQRTKKLLLAKQEIRRLIGKTEQKGYTLVPLDLHFKGGRVKCQFALGKGKALHDKRETEKKRDWEREKGQLMRHKVSSKG
>NZ_CP040709.1|WP_138856233.1|1654987_1655449_+|type-II-toxin-antitoxin-system-RatA-family-toxin
MKPVKKSVLLWYSPREMYELVTGIERYPEFLPWCERAEVLERREDGVTARLELAFAGVRSSFTTRNVHHDGQRVRVELVDGPFTHLDGDWVFKPLARPGAAPGEVNACKVEFELSYAFARGGLETVLSPVFDKVAGTLVDRFVERAEAVYGRR
>NZ_CP040709.1|WP_138856234.1|1655435_1655747_+|RnfH-family-protein
MAGAEMLQIELCWSPAAQRLELQVLSLPPGSLVRDALAALPADLLWERVGVWGHKVELEDALTHGDRVEVYRGLTVDPMEARRRRLAVQGRPRASRHRPQRKP
>NZ_CP040709.1|WP_138856235.1|1656018_1656534_-|DUF4124-domain-containing-protein
MAVHRIFCLLGLTLLLATTAQAQGQWKWRDAQGNVQYSDRPPPQGTPEKDILARPANARKPVQLVPFGQPQASAPAASAPANAASAAAARRQAEEAARRTKEVDEKNKAIEAQNAATRAENCKQARQQLATLESGVRLAHVDEKGERGVMDDAARAAAIARAKTVIASECR
>NZ_CP040709.1|WP_138856236.1|1656653_1658120_+|IMP-dehydrogenase
MRLLGKALTFDDVLLVPAFSQVLPRDTDLSTQLTRRIRINLPIVSAAMDTVTEARLAIAIAQEGGIGIVHKNLPAAAQAAEVARVKRYESGVLRDPITIGPDLKVHEVLALSQQHGVSGFPVVEGKKVVGIVTGRDLRFETRMDVAVREIMTPAERLVTVPEGVSLADAKALLQKHRLERLVVVNDSFDLRGLITVKDITKQTSFPNAARDAMGKLRVGAAVGFGDDTEERVERLVKAGVDVLIVDTAHGHSAGVLDKVRWVKNQYPQVDVIGGNIATAAAAKALADAGADGVKVGIGPGSICTTRIVAGVGVPQITAIDNVASALRGSGVPVIADGGVRFSGDLAKAIAAGADCVMMGGAFAGTEEAPGDLILYQGRSYKSYRGMGSLGAMAKGSADRYFQEGGNNPNTSKLVPEGIEGQVPYKGSVVQVIFQMAGGLRASMHYCGCASIKDMQDKAEFVEITSAGMRESHVHDVQITKEAPNYRAE
>NZ_CP040709.1|WP_138858322.1|1658216_1659434_+|MFS-transporter
MAFIFATVLIDMISIGLIIPVLPVIAGSFSQTQAEHAQAYLWVAGAFGLANFLASPVLGALSDQHGRRPVLLLGFTGLALSFFVTASATALWMLVAVRLVSGAMQANISVANAYVADITPPADRAKRFGLLGAAFGIGFVLGPATGGVLGAIDLRLPFWVAGGMALLNLAYGYFVLPESLPLDKRRRFDWRSANPVSSLKKLTELKGVGVLVAVIALSSLAQFILHSSWVLFTSFKFGWGPRENGWSLFAVGLMSVIVQGGLLPRMLKRFATPRLVVLALASSALTYLGWALVPEGWMLVALIVMNVFGYAATASIQSIISNSVDATRQGSTMGAVASLNSLMVVLGTLIGPSILTLVAHLPRGDWRIGAPFLLCAALQALALFFALAYQRQHHSQAAPQVNSHA
>NZ_CP040709.1|WP_138856237.1|1659426_1661058_+|glutamine-hydrolyzing-GMP-synthase
MHDKVLILDFGSQVTQLIARRVREAQVYSEIHPNDVSDEFIREFNPKAIILSGSHASTYEDHELRAPAQVWAQGVPVLGICYGMQTMAVQLGGTVSWSDTREFGYAEVRAHGHTQLLSGIEDFATAEGHGMLKVWMSHGDKVTALPPGFKLMASTPSCPIAGMADEVRRFYAVQFHPEVTHTVQGEALLRRFVRDIAGCKGDWQMGGYIDEAVAKIREQVGDEEVILGLSGGVDSSVAAALIHRAIGDQLTCVFVDHGLLRLNEGDAVMEMFAGKLHARVIRVDASELFLGELAGVTDPEQKRKIIGRLFVDVFKAEAAKLKAGTEGHKGENGSRAVKGATFLAQGTIYPDVVESGGTKTKKATTIKSHHNVGGLPEQLGLKLLEPLRELFKDEVRALGVALGLPHDMVYRHPFPGPGLGVRILGEVKKEYADLLRRADAIFIEELRNTIDPATGKSWYELTSQAFTVFLPVKSVGVMGDGRTYDYVVALRAVQTSDFMTADWAELPYAMLKRTSGRIINEVRGINRVTYDVSSKPPATIEWE
>NZ_CP040709.1|WP_138856238.1|1661253_1661997_-|transporter-substrate-binding-domain-containing-protein
MLLRLALLFALLCWHSPSRAETAVIATLEWPPYIGATLPQEGGSAAVVRAAFKAVGREVRFEYLPWARAVEDGSHRSGLAGYFPAYQSAERDAKGLRSAPIGASRVGFARRPDQALRWRRLDDLRELRLGVVRGFVNTAEFDQRMKDGRLKTEAAVSDEVNLRKLVFGRVQAAVVDQAVFNALMHKELAAHRHELVFDEARLLEEKPLYVYFQRNAQGQRWRALFNQGLAKIEIQRVFDAALAGASE
>NZ_CP040709.1|WP_138858323.1|1662062_1663253_-|DNA-polymerase-IV
MDAFYASVELLRYPELKGQPVVIGGRREHQPRPGADGRLQFARLRDYTGRGVITTATYAARAYGVRSGLGLMKAAALAPDCVLLPVDFEAYRAASRAFKAAVREIAPVIEDRGIDEIYIDLSELAAQREGVAHDPLGGLKQLAQDIKNNVRAATRLSCSIGLAPNKLLAKIASDLDKPDGLTLIRPEDLTLRIWPLPARAINGVGPKAAQRLEDLGVQTIGELAACDPAWLVQRFGKAYGLWLHQSAHGLDERPVQTHSEAVSISHETTFERDLHAVRDKAELGRILTALCEALARDLARKGLVARTIGIKLRFEGFKTVTRDQTLARGVQELAEIRHAAGLCLKRVDLSLRLRLMGVRAAGLAPVSSRATGPSPELRGAAPKPVTAPLFEPTNPG
>NZ_CP040709.1|WP_138856239.1|1663282_1664698_-|argininosuccinate-lyase
MSSNPLANKAQAWSALFAEPMSELVQRYTASVGFDQRLWQADLQGSLAHAEMLQAQGLISAEDWAAIQRGMETIRHEIESGQFVWKLELEDVHLNIEARLTELVGLAGKRLHTGRSRNDQVATDVRLWLRGEIDGLLQLLSQLQRVLVERAEAHVDVIGPGFTHLQVAQPVSFGHHLLAYVEMFARDAERLVDCRRRANRLPLGAAALAGTPYPLDRERVARTLGMEGVCQNSLDAVSDRDFAIEFTHAAALAMMHISRLSEELVLWMSQSFAFITLPDRFCTGSSIMPQKKNPDVPELARGKTGRVYGHLMALLTLMKGQPLAYNKDNQEDKEPLFDTVDTLRDTLRIFVEMLAGLQAKPQSLRAAALKGHATATDLADYLVREKGIPFRDAHEIVAHAVRVASEQGLELAGLSLEQLQGIDARIGSDVFGPLSLEGSVASRRGLGGTAPEQVRAQIARHRARLQDDKPD

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Crispr_ID: NZ_CP040709_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040709_3

3159962-3160072

Orphan

Consensus_repeat	Method
AGCAGAGCCTGCACAAACTCGCGTGCGCTGAAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040709_3

>merge|NZ_CP040709|3|3159962-3160072|CRISPRCasFinder
AGCAGAGCCTGCACAAACTCGCGTGCGCTGAAGGCCTCCACAGGGGCCGCTTCTGCGAGTTGGCTCCGGCTCAGCTAAGCAGAGCCTGCGCAAACTCGCGTGCGCTGAAGG

>NZ_CP040709|3|3|3159962-3160072|CRISPRCasFinder
AGCAGAGCCTGCACAAACTCGCGTGCGCTGAAGG	CCTCCACAGGGGCCGCTTCTGCGAGTTGGCTCCGGCTCAGCTA
AGCAGAGCCTGCGCAAACTCGCGTGCGCTGAAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040709.1\|WP_138857470.1\|3155182_3156913_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|236901
NZ_CP040709.1\|WP_138857485.1\|3172562_3173843_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP040709.1\|WP_138857474.1\|3159485_3159953_+\|DUF2726-domain-containing-protein	unknown	unknown	gnl\|CDD\|371282
NZ_CP040709.1\|WP_138857471.1\|3156909_3157146_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040709.1\|WP_138857476.1\|3161563_3161941_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040709.1\|WP_138857467.1\|3149835_3152706_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|235966
NZ_CP040709.1\|WP_138857477.1\|3161937_3163296_+\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|237673
NZ_CP040709.1\|WP_138857472.1\|3157146_3157917_-\|cytochrome-c-biogenesis-protein-CcsA	unknown	unknown	gnl\|CDD\|226621
NZ_CP040709.1\|WP_138857480.1\|3165283_3165844_+\|crossover-junction-endodeoxyribonuclease-RuvC	unknown	unknown	gnl\|CDD\|234587
NZ_CP040709.1\|WP_138857466.1\|3148360_3149494_-\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|235968
NZ_CP040709.1\|WP_138857478.1\|3163363_3163993_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_CP040709.1\|WP_138857468.1\|3153166_3153763_-\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	unknown	unknown	gnl\|CDD\|236984
NZ_CP040709.1\|WP_138857482.1\|3167551_3169402_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP040709.1\|WP_138857481.1\|3165849_3167610_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|182732
NZ_CP040709.1\|WP_138857479.1\|3164035_3165022_+\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|226955
NZ_CP040709.1\|WP_138857469.1\|3153740_3155186_-\|response-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP040709.1\|WP_138857483.1\|3169389_3170310_-\|methyltransferase	unknown	unknown	gnl\|CDD\|287624
NZ_CP040709.1\|WP_138857473.1\|3158004_3159390_+\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_CP040709.1\|WP_138857465.1\|3147588_3148134_-\|histone	unknown	unknown	gnl\|CDD\|173412
NZ_CP040709.1\|WP_138857484.1\|3170779_3172444_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225307

Protein	Function_ID	Function_description	E-value
NZ_CP040709.1\|WP_138857470.1\|3155182_3156913_-\|PAS-domain-containing-protein	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	1.22518e-35
NZ_CP040709.1\|WP_138857485.1\|3172562_3173843_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	3.8375e-32
NZ_CP040709.1\|WP_138857477.1\|3161937_3163296_+\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|237673	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
NZ_CP040709.1\|WP_138857467.1\|3149835_3152706_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|235966	PRK07207, PRK07207, ribonucleoside-diphosphate reductase subunit alpha.	0
NZ_CP040709.1\|WP_138857482.1\|3167551_3169402_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.46245e-146
NZ_CP040709.1\|WP_138857472.1\|3157146_3157917_-\|cytochrome-c-biogenesis-protein-CcsA	gnl\|CDD\|226621	COG4137, COG4137, ABC-type uncharacterized transport system, permease component [General function prediction only].	4.22646e-28
NZ_CP040709.1\|WP_138857480.1\|3165283_3165844_+\|crossover-junction-endodeoxyribonuclease-RuvC	gnl\|CDD\|234587	PRK00039, ruvC, Holliday junction resolvase; Reviewed.	1.57335e-79
NZ_CP040709.1\|WP_138857466.1\|3148360_3149494_-\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|235968	PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit beta; Validated.	0
NZ_CP040709.1\|WP_138857478.1\|3163363_3163993_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	9.4724e-40
NZ_CP040709.1\|WP_138857468.1\|3153166_3153763_-\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	gnl\|CDD\|236984	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD.	3.13801e-112
NZ_CP040709.1\|WP_138857484.1\|3170779_3172444_+\|hypothetical-protein	gnl\|CDD\|225307	COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases [General function prediction only].	3.6937e-174
NZ_CP040709.1\|WP_138857481.1\|3165849_3167610_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|182732	PRK10789, PRK10789, SmdA family multidrug ABC transporter permease/ATP-binding protein.	3.6478e-165
NZ_CP040709.1\|WP_138857479.1\|3164035_3165022_+\|phosphatidate-cytidylyltransferase	gnl\|CDD\|226955	COG4589, COG4589, Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only].	1.56726e-61
NZ_CP040709.1\|WP_138857469.1\|3153740_3155186_-\|response-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	6.7048e-173
NZ_CP040709.1\|WP_138857483.1\|3169389_3170310_-\|methyltransferase	gnl\|CDD\|287624	pfam10672, Methyltrans_SAM, S-adenosylmethionine-dependent methyltransferase. Members of this family are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyze the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalyzed by the S-adenosylmethionine-dependent methyltransferases.	1.87e-99
NZ_CP040709.1\|WP_138857473.1\|3158004_3159390_+\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_CP040709.1\|WP_138857465.1\|3147588_3148134_-\|histone	gnl\|CDD\|173412	PTZ00121, PTZ00121, MAEBL; Provisional.	4.54265e-19
NZ_CP040709.1\|WP_138857474.1\|3159485_3159953_+\|DUF2726-domain-containing-protein	gnl\|CDD\|371282	pfam10881, DUF2726, Protein of unknown function (DUF2726). This bacterial family of proteins has no known function.	1.3272e-07

>NZ_CP040709.1|WP_138857474.1|3159485_3159953_+|DUF2726-domain-containing-protein
MMQVPFFQRLGQQLRPLVRAHANEDTVAAWPPVAARLLNAPERLAHSVLQQALPDCQLFVHVPLARLVRVPNRRSYNEWLSRISGLSADFAICDRSSQVIGTVLLSPREETPRGKLRRERLARVLRAAGLQVVEWQVGWQPHQNELRQALGLARL
>NZ_CP040709.1|WP_138857473.1|3158004_3159390_+|signal-recognition-particle-protein
MASTLADRLSRLVKTMRGQARITETNVQEMLREVRMALLEADVALPVVRDFVARVKDKALGAEVVGSLTPGQALVGIVHKELAATMGELDEKGQLKAGASDINLHTQPPAVILMAGLQGAGKTTTTAKLAKHLIEKRKKKVLTVSGDVYRPAAIEQLKTVTAQAGAEWFPSTPDQKPRDIALAALDHARRHYFDVLLVDTAGRLAIDEALMAEIRELHATLKPVETLFVVDAMQGQDAINTAKAFKEALPLTGVVLTKLDGDSRGGAALSVRAITGVPIKFAGVSEKIDGLEAFNAERHAGRVLGMGDIVALVEEVTKGVDLESAKAMADKIKSGDAFTLDDFLLQLQQMKKMGGLSSLMDKLPTQIAAKAGANEMERAERDMRRMTGIIHSMTKLERRKPEIIKATRKKRIANGAGVQVQDVNRLLNQFEQMRDMMKKMKGGGLFKMMKKMGGMKGLPGM
>NZ_CP040709.1|WP_138857472.1|3157146_3157917_-|cytochrome-c-biogenesis-protein-CcsA
MWLTGLSLLALLGYGLSAWGASAQRERWLPALWVAWGAQALALLVDLGGVGAAQAGVRFGFAPALSLMLWLVLAVVLLESRFLPLHFMRRALSLLAAGTVALAWAFPGQLHAAAGPWAPLHWVLGLVSYGLFATAVLHAWLLGRAERQMRQLAPGALGLPLLRLERLTFQFVAAGVLVLGLALVLGFATLTQWRWDHKTLFSLLAFVVLAGLLAGRHWLGWRGAQALRWLYVGSCLLLLAYVGSRFVLQVMLGRGV
>NZ_CP040709.1|WP_138857471.1|3156909_3157146_-|hypothetical-protein
MARWLLLALVGLVIWGVWRARAQRSQGQRSAPQAGAKEAMRRCAECGVHLPDSLALPGRGGHFCSSDHRQRFEARQPE
>NZ_CP040709.1|WP_138857470.1|3155182_3156913_-|PAS-domain-containing-protein
MSDAGPVSRFAALRSERLGDDGGFARLYAAFLAARAALGVVLLLAQVGAWVAGGNRHPLGFWICLAYAGLTLAHALVPRLRRASGRRSLSGLRRPRWWASVGLDLVAFTTLQTLDAGGGVSLAALFILPVMMAGVLSSRRAALAAAALATLGLLGALLPQGWDSAELGTRLTQAGLAGSGYFAVALLALELAARLAREQQAAKGSLAFARQQTALNQLVIDEMQEGVLVVDRGLKVRAANPAARMLLGEREALHEPQFCLHDQRAWGELVARVSDCFAARAAEPLDVTLNFSQAPARTLRVRSRVNRGREDRGSEDLCVLLLEDRATLLARVRRDKLAAMGRMSAGIAHEIRNPLAAISQANALLSEDLPDPGAQRLTGLVAANVRRLQRIVDEVMLLAASPEGAPQVLDAVSLVAEVSQEWAATQDLPRPDCLRVDLPPGPQRVQFDPEHLRRVLVNLLDNAWRHAQEAALNAHDGSLPWVGLSLSPQGRQAVALRVFNPGPRIAPSVERHLFEPFYSTRSRGSGLGLYICRELCERYRARIDYQGAQAWGQDGNAFDVVLSRARDEAAPENAAP
>NZ_CP040709.1|WP_138857469.1|3153740_3155186_-|response-regulator
MSSTDRLLVVDDEPDLRTLYELTLLREGYSLVSAETVAEALALLQAESFAAVITDMRLPDGSGLDLLNWLEQQRRSERAIVITAHGSAENAVEALKAGAFDYLTKPVDLRQFRSVVATALGRVAGKPAPRRDEAAGKAKGQALARLAGPSAAMEQVRELIRKVGRSMAPVLLQGESGTGKELVARAIHGEGSRADQPFVAVNCGAIPEQLLEAEFFGYRKGAFTGANEDREGFFQAAQGGTLFLDEIGDLPLAMQSKLLRAIQERSVRPVGAVAELPVNLRLLSATHKDLAAEVAAGRFRQDLFYRLNVIQIRVPPLRERIGDVAAISAGLLERIARDAGVHPVPRLGADALARLAAYNFPGNVRELENVLHRALALSGATELCAEDLDLPDSVSTEDSSFGALPAGTAPAPLALPSEEALPSDLAAHLDEVERKVLLRALAQCRYNRTAAGARLGLSLRQMRYRMARLGIQVDDGEPPLG
>NZ_CP040709.1|WP_138857468.1|3153166_3153763_-|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD
MVSRRLAEAGVPLWQQGWLRAARHCPSPNYGPRPRGVAVDLVVVHSISLPPGVFAGPQIEDFFLNRLDFDAHPYFDTLRGMQVSAHFLVRRDGELLQFVSVADRAWHAGRSVFDGRENCNDYSVGIELEGLEGGAFEPAQYRCLVGLLRALRQAMPLRAVVGHEHVAPGRKADPGPGFDWQGLRRMLRWSAQRFPCAG
>NZ_CP040709.1|WP_138857467.1|3149835_3152706_-|ribonucleoside-diphosphate-reductase-subunit-alpha
MHSSVSTAAPAVDHPTPGAATAHALPSAYLAYQIIRRNGAVVSFEPSKIAVALMKAFLAVHGAQGAASASVRETVDGLTEACVRALLRSRPGGGTFHIEDVQDNVELALMRGGHHEVARAYVLYRERRSAERAAKGEAPAAPPPAETLHVVDGGQRRPLDLAALQAMIESACANLGDAVKAEPILAETQRNLYDGVAIDEVYKAAILSARTLIEKEPGYTRATARILLHTIRKEILGQETTQAQMAERYVEYFPKFIKKGVDAELLDPRLAQFDLVKLGAALKAERDLNFDYLGLQTLFDRYFLHIKKARIELPQAFFMRVAMGLALNEVNREARAIEFYEVLSSFDFMSSTPTLFNSGTLRSQLSSCYLTTVADDLDGIYEAIKENALLSKYAGGLGNDWTPVRALGSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHLDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVIEGADWSLFSPSTTPDLHDLMGADFERAYVAYEARAARGEIKPYKKLPARELWRKMLTMLFETGHPWITFKDACNVRSPQQHCGVVHSSNLCTEITLNTNDSEIAVCNLGSVNLAHHLKDGGVDHAKLKRTVSTAMRMLDNVIDINYYAVKKARDSNLRHRPVGLGLMGFQDALYQLRIPYASQEAVEFADRSMEAICYQAYWASSELAEERGRYSTYKGSLWDRGILPLDSLDLLAEQRGGYVEVDRSSTLNWEALRARIGQHGMRNSNCVAIAPTATISNIIGVDASIEPSFGNISVKSNLSGEFTVVNEYLVRDLKALGLWDEVMVMDLKHFDGSLRRIDRVPEELKNLYATAFEIEPSWLIEAGARRQKWIDQAQSLNIYMAGASGRKLDETYKLAWTRGLKTTYYLRTIGATHAEKSTVSRGQLNAVSNQVAAPMAAAEPELPATDAKFCSIDNPDCEACQ
>NZ_CP040709.1|WP_138857466.1|3148360_3149494_-|ribonucleotide-diphosphate-reductase-subunit-beta
MLNWEDEVKPSPAISSFAGQSAAHNPAASVPVSPAASAHRRVNVADKRIINAQTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMSRDIALWKDPNGLTDDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYNEVPSIRAKDEFLIPFIDAIMDPNFKTGTPETDQTLLKSLIVFACLMEGLFFYVGFTQILAMGRQNKMTGAAEQYQYILRDESMHCNFGIDLINALKLENPHLWTAEFKAEIKALFLKAVELEYRYAEDTMPRGVLGLNASMFKGYLRFIANRRAVQIGLDPLFPNEENPFPWMSEMIDLKKERNFFETRVIEYQSGGALSWD
>NZ_CP040709.1|WP_138857465.1|3147588_3148134_-|histone
MATAKKAAPAKKAAPAKKAAPAKKAAAPAKKAAPAKKAAAPAKKAAPAKKAAAPAKKAAPAKKAAAPAKKAAPAKKAAAPAKKAAPAKKAAAPAKKAAPAKKAAAPAKKAAPAKKAAAPAKKAAPAKKPAAPAKKAAPAKKPAAPAKKASGSKSPPVKAAPTAKTTLSPQAAWPFPTGNKP
>NZ_CP040709.1|WP_138857476.1|3161563_3161941_+|hypothetical-protein
MIRCALALAATVLASPLLAQTHRHFPADALRGEIKFLQPPAVQLNGKPQTLSPGSRLQGENGMGVLSGELIGRAHSVHYTLNTDGQLRDVWILNATERQNRVWPKSREEANRWTFDPSTQTWSKP
>NZ_CP040709.1|WP_138857477.1|3161937_3163296_+|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MSAPTSKKVYIKTFGCQMNEYDSDKMVDVMHQAEGYEKTDDPEAADLILFNTCSVREKAQEKVFSDLGRVRHLKAKGVKIAVGGCVASQEGAAIIDRAPYVDVVFGPQTLHRLPELLAKRTEVAKPQVDISFPEIEKFDHLPPAKVEGRSAFVSIMEGCSKYCSYCVVPYTRGEEVSRPFEDVLVEVAGLAEQGVLEVTLLGQNVNAYRGKMGESGEIADFAMLLEYVAEIPGIQRIRYTTSHPNEFSQRLIEAYGKIPQLVNHLHLPVQHGSDRILAAMKRGYSAIQFKSIVRKLRAIRPDIRIASDFIVGFPGETDEDHAQTMKLIQDVGFDASFSFIFSPRPGTPAANLPDDTPYEVKVARLQQLQAAIEAHALSISQTLVGTRQKVLVVGNAKKDPSELMGRTECNRIVNFKGHARLMNELIELDITDAYPHSLRGAVPITESHTEAV
>NZ_CP040709.1|WP_138857478.1|3163363_3163993_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MRLADLMGPLLGFIARAITGAQGHWLGCPPSNEQRIYIANHQSHFDLVLIWAALPAELRPRVRAIAARDYWTKSKFKTWLTTDVFNTVYVSRTRANPDEDPLEPLVEALRQGDSLLIFPEGTRSAKGEPLPFKAGIYHLAEQFPNVQIIPTWIDNVQRVMPKGEVVPVPILCTVTFGTPTQIQPEEDKKAFLERTRAEMMALKPGGWRQ
>NZ_CP040709.1|WP_138857479.1|3164035_3165022_+|phosphatidate-cytidylyltransferase
MSELKHWSPADQIALLFGLLFGLLLLITAGGVLYRAKNPVEELTIEPRSARAQFRRDLNASWIGALLFWLAWISGAVGSTILFGLFSFFCLREFITLQHTTRSDHRTLIAAFFVILPLQYIVVANRRFDLFTVLIPVYAFLAIPVISALSGDPKRFLERNAKIQWGVMVCVYGLSHAPALLLLEFPRYQGRGAFLLFFLVTVVSIAQIMQEVASRSLRRRPAVRAISRSFSKRAWWIGALSGAFVGALLYWVTPFKAGQAFVLAFLAAGSGTLGALVMKAMKREAGVHYWGNRSSITGAIGLLDRTAALCFAAPIFFHSVRWYFKLSV
>NZ_CP040709.1|WP_138857480.1|3165283_3165844_+|crossover-junction-endodeoxyribonuclease-RuvC
MRILGIDPGLQTTGFGVIEADGPRLGYVASGTIRTTGAAAGVATGDLPGRIKILFEGVREVVQTYSPDCAALEIVFVNVNPQSTLLLGQARGAALAALTTSGLTVNEYTALQMKKAVVGHGHAKKEQIQAMVQRLLNLPGLPGKDAADALGLAIMHAHAQTSFAAMSAKGSLARRQHAQFKGTRTY
>NZ_CP040709.1|WP_138857481.1|3165849_3167610_+|ATP-binding-cassette-domain-containing-protein
MNPHPQTLSGLLRAFVWEHRRAYGSAALMLTGISLLLVWIPTQVGHIVDGLVERGLQGPGLYRELAWLAGAGLAVYGLRVAWRLALFGASFRLGQRLRVALFERLGAQAPRFFQTQRAGDLMALATNDVDAVETASGDAMLAAFDGTQTLILVVLSMLVVIDWRLSLAALLPFPFMAWAFWWISNRVHEAWSASLEDFSKMSRQAQQTLGALRTVRAMGLADQEQAAFQAWAQTSGQAAYRAQRWEAAYEPAVGIALTVSTAAALGCGAWLIGRGELTVGQLTAFILLLDRLIWPMFAAGWVLSLLERGRAGWARLAPVLQAEATRVDSGTRGPVREAALKVRDLHFAYDPASPVLRGLDVELRPGQMLAVVGPTGSGKSTLLRLLLRQWEPDSGQIELDGAPLPEWQRSALAEALAWVPQEPFLFSASVAENIALARATATPAEVEAAAQAAALHGDLLRLPQGYATTVGEKGVSLSGGQRQRVAIARALLSEAKLTLLDDALSAVDTGTETQILQALRERRSQRPECALVVVTHRLSAAVDADEIIVLREGRISERGRHAELLALNGWYATQWRYQQLEQSLED
>NZ_CP040709.1|WP_138857482.1|3167551_3169402_+|ATP-binding-cassette-domain-containing-protein
MAGTPRSGATNSWSKALRTEAQDTARSSSRAAAGLLLRMAAPERATVWAGIAWLALAAGLEALGPILGQRLIDHYLRPAKLDDWQPLALLLGLMTTVGVAASLIRYLQLTRMAGVARRSVLRLREQVYAHVLALPMAYFDRHITGALVSRVTNDTEAVNQLYRQVLYVMLDSSIVVTGALVAMAWLDWRLMLIIAALIPAMVGVIWGYQRLSAPAVAEARALKSDINAQIAENLNGLAVLQASGALGRFQARFAGHNQRHYQARMKELGANAWLLRPALDLLNVLLMVALIYGFAQRQGSAVDGGLQVGLLYAFLAYLTRVVEPLIQITMQFGQLQQSLVAAARVGVLLQERAEPAHESARGIQAGAIQLRALRAGYGDGPDVLHPFDADIAPGQFIGLVGHTGSGKSTLLSLLLRFYSPRAGQILFDGLSLDELGEAALRQDLALVPQEPQLLAASAWDNLRMGRTHLSEAALQTAAQQAHIHDLLQSLPQGYDTLLGEGGVQLSTGQKQLLAMARALAGAPKILLLDEATANIDSATEALLGQALEQLRGRVTVIAVAHRLSTIRAADAIWVLHHGQRVECGRHEELMAISGGVYQRLVQLQQLEEPRPETQAR
>NZ_CP040709.1|WP_138857483.1|3169389_3170310_-|methyltransferase
MQALFEAIAQLPLPSEAQRHFHGRGGLFPGCEHLALDAYPPAWLLTSFEPLSEEALAQIHQALAQRWAELDTQGQALCWVYQCRQEGGRAETRLMAGELPEPHTVVEGGARYLVHLLKGQNHGLFLDMAEGRAWVRQQIAALPHAKVLNLFAYSCAFSVVALQAGAEQVINVDMSPGALALGRRNHELNGLKGGASFLAHDIFKSWGKLTRSGPYELVIVDPPSFQKGSFVATKDYARLMRRLPELLAPGGHALLCLNTPKLGEAFLREQMQEAAPALQFVQRLPNPAAFADVASDRALKVLIYRA
>NZ_CP040709.1|WP_138857484.1|3170779_3172444_+|hypothetical-protein
MLRITDLRLPLNHTDAQLHAAVLQRLGLTPQQAEQLKGFTVFKRAHDARKKTAMQLIYTLDCELTDPAHEAELLASGDAHLRPSPDTRYKVIGHAPADFYAQGSKKRPVVVGFGPCGLFAALILAQMGLRPLVLERGRAVRDRTKDTWGLWRQGVLKPESNVQFGEGGAGTFSDGKLYSQISDPRHLTRKVLTEFVKAGAPEEILFVSKPHIGTFRLVSMIEKMRADIEALGGEIRFEQKVVDLQIEDGAVRGLTLETGEQIEADHVVLALGHSARDTFAMLHARGVYMEAKPFSVGFRIEHPQSLIDAARFGPNAGNPLLGAADYKLVHHAKNGRSVYSFCMCPGGTVVAATSEPDRVVTNGMSQYSRAERNANAGIVVGINPQDYRQDGKTEGPVNPLDGMAFQRIWESRAFELGEGGYRAPGALVGDFLKRQPSTVLGEVMPSYKPGITLTQLQEKGRTVLPPYVLEAIREALPAFGRQIRGFDRADAVLTGVETRTSSPLRLTRGRDYQSLNVRGLYPAGEGAGYAGGIMSAGVDGIEVAEALGRALLDG
>NZ_CP040709.1|WP_138857485.1|3172562_3173843_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MDQPIRSTAAQDRALPPSPWRRWRRPLIGLVALTALGGLGALSARQLQSQRLPQFQLSQLSIASVERADVQRDVAAEGRVVAANSPTLFAPQAGTLQWQIQAGDSVTQGQLLARIASPDLQARVQQERAAAAAAQAEARRAQAEGESERGRVQAAVDTARIELQAALTADKRQRAAFEAGATARLQWEQAQDQLERARIQLKQAESAHRLRLQSLQYELEAKQAAANRAASQAAELERQLAALELRAPHAGAVGSLLVDNGAVVARDAKLLTLVDLSQLDVQIQVPEGQARELSLGLPGEVRVAGQPVAAKLISISPEVVNGEVAARLRFVGSQPPELRQNQRLSARVLLERKPQVASLPRGSFIEQGGGRFAYVLRADGRAERRDIRLGAQSLERVEVLSGLKLGERVVVSGLDGVGEARELQIN

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Crispr_ID: NZ_CP040709_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040709_4

3734908-3738357

TypeI

I-C

Consensus_repeat	Method
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CRISPRCasFinder
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CRT
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	PILER-CR

48 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP040709_4

>merge|NZ_CP040709|4|3734908-3738357|CRISPRCasFinder,CRT,PILER-CR
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACGGCGTGGGCCTATGGCACGGTCCCGCAATCTGGGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACGCCCTGGCCGGCGCGACGATCCCGCCCGGCCTTGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACTTGGCTTGACGCTTACAGTTTGTCGCGAGTTGCGGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACATGTGCGGCCTTTCATGCCACGGGAACGCCGCCCGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACGTCAGTCTCACGCAGCCAATCGACACCACCAATGCGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACATCGAATGGGATTTGAGGCATGGCCGCGCGTGGCGGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACCTGTTGAGCCGCGCTCAGGGTCGGGGGCTGTGGTGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACGTTGAAGTGGTGAACAACGCCGCCAGCGGCACGGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACCGCGTGGCCGAGCCGCATCACGATGGGACGCCGCGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACTGGCTAGGATTGAGGCGGTAGGCGCTAGCTTCGGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACATCGAAAAGCCGAATCAATTGAGCCATAGCCCAGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACCACCATCAAAGGCTCTGCGGGCCGGCTGATCGGATGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACCTCATGGCGCCCAGGCCTCCGACAGATCCGGCACGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACCCGGCGCTCTTCGACGGTCTGCACGCCCACAACCTGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACAAGATCCCCCCGGTGATGTTGTCCACGAACTGGAACGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACGCCTGCTCGATGCCGAGCACTTGAGCGCCGCCGACGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACGTTTGATGTGGTGGACAACAGCAACCGCAGCAGCGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACAGCGCAGGCAAGCGCATGCACCGGATCACCCGCAGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACTCGATCTGGGCATCGGTGAGCTTTTGACGTCCTGAGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACCGCACGCCCTCCGGCGTCTGGCTGCACAGCACGGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACGTCTGCGTCGACGACTGTTTGTAATGGCGGCTGCGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACGGCCAGATGCTGGCCGATCTCGGGGGGCCAACGGGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACTTCGCGTTCCGTGTCGCCATCGATAACTGAGGCCCGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACACGGAGTGCGGGCGCGCTCAAACGCCACCTCCACGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACATTGTGCCAACACGCGCCGGCATCCTGGGCGGCGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACAACGGCACCGCCATTGCCAACCTGGCCGACAACGCGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACCAGCCCATCTAGTGCCTCACTTTCGGGCCAGCAGGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACATGCCTTCGGGCGTGCGCGCCGCGCTCGAAAAAGGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACTGTGATGCTGGCGCGGGACAAGGCGATCCGGGCCGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACAAGGACGCCCGCGACAAGCTCAAAAGCGGCCTGCGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACCTGCAGGGGCGCCGCAAAGCGCTCGGCCAGCTCAGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACGGGTGGCCGGGAATCCGTACTGGCTGACCCTGGAGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACTGACATGGTGAAAGCCCGCCAACTGATCGCCAAGACGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACTGCCAGCAGCTGGAGCACGTGGCTTTGCCGTGCGAGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACTTCATTGCCGGAGCGGGGATGTACTCAGCCCCGGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACTGGGAGGGAGCCATGCCGCACATCACCGCAGCCTTGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACGGCGGTGATGCTGGCCAGCCGTGCGGTGGCCAAGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACGGCCTGCCCCCGGGCACCGTCGAAATCGTCGGCGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACATCCGCTGGTCTTGGCGCCGCTACTCCTGCGGCGGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACTGATCGCTCAATGCGCTTGCGCTCGGCTTCAGTAGGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACTTCCATCAAGGCCTCGCTCTTGCTGATCCAGCTCGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACGCTGGGTCGCTCGCTTGAGGACTTGAAGCGCAAGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACCAGTGGTGAGGGCCGGGCAATGATCATCTTTCACGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACACGCACGAGCTGCAGGCGGTGCAGTGGATCGAAGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACTTCGTTCAGCAGGCCAGCGCGGCCGGCGATGACGCGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACTTTGGGTAACTGCCCTACGGGGTTGCCTGATCAGGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACCTGGAGGCCGGCAGCATGAGCGGCATTCGGCCCGGCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAACTTGGCATCGGTGGGCGGCAGGCCCACCAAGCCGCCGCACCGCCCGCCTTCACCGGCGGGCGCGGATGAAACG

>NZ_CP040709|4|4|3734908-3738357|CRISPRCasFinder
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GGCGTGGGCCTATGGCACGGTCCCGCAATCTGG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GCCCTGGCCGGCGCGACGATCCCGCCCGGCCTT
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TTGGCTTGACGCTTACAGTTTGTCGCGAGTTGCG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	ATGTGCGGCCTTTCATGCCACGGGAACGCCGCCC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GTCAGTCTCACGCAGCCAATCGACACCACCAATGC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	ATCGAATGGGATTTGAGGCATGGCCGCGCGTGGCG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CTGTTGAGCCGCGCTCAGGGTCGGGGGCTGTGGT
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GTTGAAGTGGTGAACAACGCCGCCAGCGGCACG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CGCGTGGCCGAGCCGCATCACGATGGGACGCCGC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TGGCTAGGATTGAGGCGGTAGGCGCTAGCTTCG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	ATCGAAAAGCCGAATCAATTGAGCCATAGCCCA
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CACCATCAAAGGCTCTGCGGGCCGGCTGATCGGAT
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CTCATGGCGCCCAGGCCTCCGACAGATCCGGCAC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CCGGCGCTCTTCGACGGTCTGCACGCCCACAACCT
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	AAGATCCCCCCGGTGATGTTGTCCACGAACTGGAAC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GCCTGCTCGATGCCGAGCACTTGAGCGCCGCCGAC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GTTTGATGTGGTGGACAACAGCAACCGCAGCAGC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	AGCGCAGGCAAGCGCATGCACCGGATCACCCGCA
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TCGATCTGGGCATCGGTGAGCTTTTGACGTCCTGA
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CGCACGCCCTCCGGCGTCTGGCTGCACAGCACG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GTCTGCGTCGACGACTGTTTGTAATGGCGGCTGC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GGCCAGATGCTGGCCGATCTCGGGGGGCCAACGG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TTCGCGTTCCGTGTCGCCATCGATAACTGAGGCCC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	ACGGAGTGCGGGCGCGCTCAAACGCCACCTCCAC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	ATTGTGCCAACACGCGCCGGCATCCTGGGCGGC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	AACGGCACCGCCATTGCCAACCTGGCCGACAACGC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CAGCCCATCTAGTGCCTCACTTTCGGGCCAGCAG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	ATGCCTTCGGGCGTGCGCGCCGCGCTCGAAAAAG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TGTGATGCTGGCGCGGGACAAGGCGATCCGGGCC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	AAGGACGCCCGCGACAAGCTCAAAAGCGGCCTGC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CTGCAGGGGCGCCGCAAAGCGCTCGGCCAGCTCA
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GGGTGGCCGGGAATCCGTACTGGCTGACCCTGGA
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TGACATGGTGAAAGCCCGCCAACTGATCGCCAAGAC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TGCCAGCAGCTGGAGCACGTGGCTTTGCCGTGCGA
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TTCATTGCCGGAGCGGGGATGTACTCAGCCCCG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TGGGAGGGAGCCATGCCGCACATCACCGCAGCCTT
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GGCGGTGATGCTGGCCAGCCGTGCGGTGGCCAA
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GGCCTGCCCCCGGGCACCGTCGAAATCGTCGGC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	ATCCGCTGGTCTTGGCGCCGCTACTCCTGCGGCG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TGATCGCTCAATGCGCTTGCGCTCGGCTTCAGTAG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TTCCATCAAGGCCTCGCTCTTGCTGATCCAGCTC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GCTGGGTCGCTCGCTTGAGGACTTGAAGCGCAA
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CAGTGGTGAGGGCCGGGCAATGATCATCTTTCAC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	ACGCACGAGCTGCAGGCGGTGCAGTGGATCGAA
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TTCGTTCAGCAGGCCAGCGCGGCCGGCGATGACGC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TTTGGGTAACTGCCCTACGGGGTTGCCTGATCAG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CTGGAGGCCGGCAGCATGAGCGGCATTCGGCCCG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TTGGCATCGGTGGGCGGCAGGCCCACCAAGCCGCC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATGAAACG

>NZ_CP040709|4|1|3734908-3738357|CRT
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GGCGTGGGCCTATGGCACGGTCCCGCAATCTGG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GCCCTGGCCGGCGCGACGATCCCGCCCGGCCTT
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TTGGCTTGACGCTTACAGTTTGTCGCGAGTTGCG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	ATGTGCGGCCTTTCATGCCACGGGAACGCCGCCC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GTCAGTCTCACGCAGCCAATCGACACCACCAATGC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	ATCGAATGGGATTTGAGGCATGGCCGCGCGTGGCG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CTGTTGAGCCGCGCTCAGGGTCGGGGGCTGTGGT
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GTTGAAGTGGTGAACAACGCCGCCAGCGGCACG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CGCGTGGCCGAGCCGCATCACGATGGGACGCCGC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TGGCTAGGATTGAGGCGGTAGGCGCTAGCTTCG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	ATCGAAAAGCCGAATCAATTGAGCCATAGCCCA
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CACCATCAAAGGCTCTGCGGGCCGGCTGATCGGAT
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CTCATGGCGCCCAGGCCTCCGACAGATCCGGCAC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CCGGCGCTCTTCGACGGTCTGCACGCCCACAACCT
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	AAGATCCCCCCGGTGATGTTGTCCACGAACTGGAAC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GCCTGCTCGATGCCGAGCACTTGAGCGCCGCCGAC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GTTTGATGTGGTGGACAACAGCAACCGCAGCAGC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	AGCGCAGGCAAGCGCATGCACCGGATCACCCGCA
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TCGATCTGGGCATCGGTGAGCTTTTGACGTCCTGA
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CGCACGCCCTCCGGCGTCTGGCTGCACAGCACG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GTCTGCGTCGACGACTGTTTGTAATGGCGGCTGC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GGCCAGATGCTGGCCGATCTCGGGGGGCCAACGG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TTCGCGTTCCGTGTCGCCATCGATAACTGAGGCCC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	ACGGAGTGCGGGCGCGCTCAAACGCCACCTCCAC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	ATTGTGCCAACACGCGCCGGCATCCTGGGCGGC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	AACGGCACCGCCATTGCCAACCTGGCCGACAACGC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CAGCCCATCTAGTGCCTCACTTTCGGGCCAGCAG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	ATGCCTTCGGGCGTGCGCGCCGCGCTCGAAAAAG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TGTGATGCTGGCGCGGGACAAGGCGATCCGGGCC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	AAGGACGCCCGCGACAAGCTCAAAAGCGGCCTGC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CTGCAGGGGCGCCGCAAAGCGCTCGGCCAGCTCA
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GGGTGGCCGGGAATCCGTACTGGCTGACCCTGGA
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TGACATGGTGAAAGCCCGCCAACTGATCGCCAAGAC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TGCCAGCAGCTGGAGCACGTGGCTTTGCCGTGCGA
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TTCATTGCCGGAGCGGGGATGTACTCAGCCCCG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TGGGAGGGAGCCATGCCGCACATCACCGCAGCCTT
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GGCGGTGATGCTGGCCAGCCGTGCGGTGGCCAA
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GGCCTGCCCCCGGGCACCGTCGAAATCGTCGGC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	ATCCGCTGGTCTTGGCGCCGCTACTCCTGCGGCG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TGATCGCTCAATGCGCTTGCGCTCGGCTTCAGTAG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TTCCATCAAGGCCTCGCTCTTGCTGATCCAGCTC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GCTGGGTCGCTCGCTTGAGGACTTGAAGCGCAA
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CAGTGGTGAGGGCCGGGCAATGATCATCTTTCAC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	ACGCACGAGCTGCAGGCGGTGCAGTGGATCGAA
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TTCGTTCAGCAGGCCAGCGCGGCCGGCGATGACGC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TTTGGGTAACTGCCCTACGGGGTTGCCTGATCAG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CTGGAGGCCGGCAGCATGAGCGGCATTCGGCCCG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TTGGCATCGGTGGGCGGCAGGCCCACCAAGCCGCC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATGAAACG

>NZ_CP040709|4|1|3735119-3738285|PILER-CR
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	ATGTGCGGCCTTTCATGCCACGGGAACGCCGCCC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GTCAGTCTCACGCAGCCAATCGACACCACCAATGC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	ATCGAATGGGATTTGAGGCATGGCCGCGCGTGGCG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CTGTTGAGCCGCGCTCAGGGTCGGGGGCTGTGGT
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GTTGAAGTGGTGAACAACGCCGCCAGCGGCACG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CGCGTGGCCGAGCCGCATCACGATGGGACGCCGC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TGGCTAGGATTGAGGCGGTAGGCGCTAGCTTCG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	ATCGAAAAGCCGAATCAATTGAGCCATAGCCCA
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CACCATCAAAGGCTCTGCGGGCCGGCTGATCGGAT
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CTCATGGCGCCCAGGCCTCCGACAGATCCGGCAC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CCGGCGCTCTTCGACGGTCTGCACGCCCACAACCT
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	AAGATCCCCCCGGTGATGTTGTCCACGAACTGGAAC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GCCTGCTCGATGCCGAGCACTTGAGCGCCGCCGAC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GTTTGATGTGGTGGACAACAGCAACCGCAGCAGC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	AGCGCAGGCAAGCGCATGCACCGGATCACCCGCA
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TCGATCTGGGCATCGGTGAGCTTTTGACGTCCTGA
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CGCACGCCCTCCGGCGTCTGGCTGCACAGCACG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GTCTGCGTCGACGACTGTTTGTAATGGCGGCTGC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GGCCAGATGCTGGCCGATCTCGGGGGGCCAACGG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TTCGCGTTCCGTGTCGCCATCGATAACTGAGGCCC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	ACGGAGTGCGGGCGCGCTCAAACGCCACCTCCAC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	ATTGTGCCAACACGCGCCGGCATCCTGGGCGGC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	AACGGCACCGCCATTGCCAACCTGGCCGACAACGC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CAGCCCATCTAGTGCCTCACTTTCGGGCCAGCAG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	ATGCCTTCGGGCGTGCGCGCCGCGCTCGAAAAAG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TGTGATGCTGGCGCGGGACAAGGCGATCCGGGCC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	AAGGACGCCCGCGACAAGCTCAAAAGCGGCCTGC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CTGCAGGGGCGCCGCAAAGCGCTCGGCCAGCTCA
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GGGTGGCCGGGAATCCGTACTGGCTGACCCTGGA
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TGACATGGTGAAAGCCCGCCAACTGATCGCCAAGAC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TGCCAGCAGCTGGAGCACGTGGCTTTGCCGTGCGA
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TTCATTGCCGGAGCGGGGATGTACTCAGCCCCG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TGGGAGGGAGCCATGCCGCACATCACCGCAGCCTT
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GGCGGTGATGCTGGCCAGCCGTGCGGTGGCCAA
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GGCCTGCCCCCGGGCACCGTCGAAATCGTCGGC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	ATCCGCTGGTCTTGGCGCCGCTACTCCTGCGGCG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TGATCGCTCAATGCGCTTGCGCTCGGCTTCAGTAG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TTCCATCAAGGCCTCGCTCTTGCTGATCCAGCTC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	GCTGGGTCGCTCGCTTGAGGACTTGAAGCGCAA
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CAGTGGTGAGGGCCGGGCAATGATCATCTTTCAC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	ACGCACGAGCTGCAGGCGGTGCAGTGGATCGAA
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TTCGTTCAGCAGGCCAGCGCGGCCGGCGATGACGC
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	TTTGGGTAACTGCCCTACGGGGTTGCCTGATCAG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC	CTGGAGGCCGGCAGCATGAGCGGCATTCGGCCCG
GCACCGCCCGCCTTCACCGGCGGGCGCGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040709.1\|WP_138857962.1\|3729206_3729389_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040709.1\|WP_138857968.1\|3734436_3734727_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP040709.1\|WP_138857970.1\|3741516_3743208_+\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|235923
NZ_CP040709.1\|WP_138857965.1\|3731811_3732720_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP040709.1\|WP_138857961.1\|3726711_3729045_+\|CRISPR-associated-endonuclease-Cas3''	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP040709.1\|WP_138857975.1\|3747311_3748064_-\|LPS-export-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213185
NZ_CP040709.1\|WP_138857967.1\|3733380_3734430_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP040709.1\|WP_138857964.1\|3730044_3731808_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP040709.1\|WP_138857959.1\|3723766_3725206_+\|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-beta	unknown	unknown	gnl\|CDD\|224201
NZ_CP040709.1\|WP_138858443.1\|3739231_3740011_-\|PKD-domain-containing-protein	unknown	unknown	gnl\|CDD\|225828
NZ_CP040709.1\|WP_138857973.1\|3744431_3745670_-\|class-I-SAM-dependent-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|236981
NZ_CP040709.1\|WP_138857972.1\|3743988_3744435_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040709.1\|WP_138857976.1\|3748149_3748779_-\|lipopolysaccharide-transport-periplasmic-protein-LptA	unknown	unknown	gnl\|CDD\|274384
NZ_CP040709.1\|WP_138857974.1\|3745805_3747293_-\|RNA-polymerase-factor-sigma-54	unknown	unknown	gnl\|CDD\|235648
NZ_CP040709.1\|WP_138857966.1\|3732728_3733373_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_CP040709.1\|WP_138857977.1\|3748762_3749434_-\|thiol:disulfide-interchange-protein-DsbA/DsbL	unknown	unknown	gnl\|CDD\|239317
NZ_CP040709.1\|WP_138857963.1\|3729400_3730048_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	gnl\|CDD\|187534
NZ_CP040709.1\|WP_138857971.1\|3743292_3744015_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|236959
NZ_CP040709.1\|WP_138857969.1\|3738425_3739226_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369777
NZ_CP040709.1\|WP_138857960.1\|3725369_3726593_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718

Protein	Function_ID	Function_description	E-value
NZ_CP040709.1\|WP_138857968.1\|3734436_3734727_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.78699e-25
NZ_CP040709.1\|WP_138857970.1\|3741516_3743208_+\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|235923	PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.	0
NZ_CP040709.1\|WP_138857965.1\|3731811_3732720_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.31851e-149
NZ_CP040709.1\|WP_138857961.1\|3726711_3729045_+\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	8.42925e-51
NZ_CP040709.1\|WP_138857975.1\|3747311_3748064_-\|LPS-export-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213185	cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system. The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.	1.83818e-145
NZ_CP040709.1\|WP_138857967.1\|3733380_3734430_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	8.19056e-170
NZ_CP040709.1\|WP_138857964.1\|3730044_3731808_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NZ_CP040709.1\|WP_138857959.1\|3723766_3725206_+\|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-beta	gnl\|CDD\|224201	COG1282, PntB, NAD/NADP transhydrogenase beta subunit [Energy production and conversion].	0
NZ_CP040709.1\|WP_138858443.1\|3739231_3740011_-\|PKD-domain-containing-protein	gnl\|CDD\|225828	COG3291, COG3291, FOG: PKD repeat [General function prediction only].	3.20962e-11
NZ_CP040709.1\|WP_138857973.1\|3744431_3745670_-\|class-I-SAM-dependent-RNA-methyltransferase	gnl\|CDD\|236981	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL.	5.38788e-114
NZ_CP040709.1\|WP_138857976.1\|3748149_3748779_-\|lipopolysaccharide-transport-periplasmic-protein-LptA	gnl\|CDD\|274384	TIGR03002, outer_YhbN_LptA, lipopolysaccharide transport periplasmic protein LptA. Members of this protein family include LptA (previously called YhbN). It was shown to be an essential protein in E. coli, implicated in cell envelope integrity, and to play a role in the delivery of LPS to the outer leaflet of the outer membrane. It works with LptB (formerly yhbG), a homolog of ABC transporter ATP-binding proteins, encoded by an adjacent gene. Numerous homologs in other Proteobacteria are found in a conserved location near lipopolysaccharide inner core biosynthesis genes. This family is related to organic solvent tolerance protein (OstA), though distantly. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	4.04227e-24
NZ_CP040709.1\|WP_138857974.1\|3745805_3747293_-\|RNA-polymerase-factor-sigma-54	gnl\|CDD\|235648	PRK05932, PRK05932, RNA polymerase factor sigma-54; Reviewed.	0
NZ_CP040709.1\|WP_138857966.1\|3732728_3733373_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.4863e-30
NZ_CP040709.1\|WP_138857977.1\|3748762_3749434_-\|thiol:disulfide-interchange-protein-DsbA/DsbL	gnl\|CDD\|239317	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.	7.52347e-51
NZ_CP040709.1\|WP_138857963.1\|3729400_3730048_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	2.62584e-92
NZ_CP040709.1\|WP_138857971.1\|3743292_3744015_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|236959	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional.	5.1949e-79
NZ_CP040709.1\|WP_138857969.1\|3738425_3739226_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.18272e-22
NZ_CP040709.1\|WP_138857960.1\|3725369_3726593_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	9.48729e-60

>NZ_CP040709.1|WP_138857968.1|3734436_3734727_+|CRISPR-associated-endonuclease-Cas2
MLVIVCYDVNTETREGRRRLRRVAKLCEATGQRVQKSVFECQIDLAHMEELERKLRAAMDETQDCLRLYRLPETRGAEVREYGRFKAVDFEAPLVL
>NZ_CP040709.1|WP_138857967.1|3733380_3734430_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MHLLNTLYLTTPDSYLRLENQTLAIEHNHELKLRVPLHHLSSVVCFGPIQLSTPLMHGLAQQGIALVLLNEQGRFQARLEGPMAGNVLLRRAQHQAGQDGERSLALARAFVAGKLRNTRSLLLRGAREAKTAEDEAALTRQAQNLAASLRALPASADLDQLRGIEGEAARQYFAGLSLLVRADARDAFHLRDGRTRRPPRDRLNALLSFLYSLWMNDCRSALEAVGLDPQVGFLHALRPGRAALALDLMEEFRPLAERLALTLINRQQLRAEDFVQREGGAVSLDPEARKAVLVAFQERKQEALQHPLLAEPLAQGLLPLVQARLLARAIRGEADVDGAPASYVPYLIR
>NZ_CP040709.1|WP_138857966.1|3732728_3733373_+|CRISPR-associated-protein-Cas4
MEAELIPLSALQHWAYCPRQCALIHLEQAFDDNLHTLRGNALHARVDQPSHRQEQGLRVERALPLWHDELGLIGKADAVEFGPDGSACPVEYKQGSRNKAAEIAACDELQLAAQALCLEAMTGRPVPLGALFYASSKRRRAVAITAELRERVRQAAQAVRAMLAAGQLPSPLEGAAAQQRCKACSLKARCQPEAASCAALRQARQALFDPDALL
>NZ_CP040709.1|WP_138857965.1|3731811_3732720_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSTPITGRLDFVLLFDVKDGNPNGDPDAGNMPRIDAETGHGLMTDVALKRKLRNFVQLVKGAQPPYDIYIKEKAVLEQTHRKAYEAIGATDELNDEGDAKGKKKRKGSADSVDKARAWICQNFFDVRSFGAVMSTGVNCGQVRGPVQLTFARSADPIVASEHAITRMAVATQAEADKQEGDNRTMGRKHTVPYALYRSHGFVSAFLAKQTGFSTEDLELLLQGLEQMFEHDRSAARGEMSTRGLFVFQHDSELGNAHAHSLFERVSVKLKPGVTAPRSFADYELSVDEASLPAGVRLLRRLG
>NZ_CP040709.1|WP_138857964.1|3730044_3731808_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILQALTQLYERRSRDPDPARRLPAPGLEDKDIPFIVELRPDGSPVQLRDTRRTVGKKPRAQSFLVPQGIKKTSGVAANLLWDTAEYALGVSAKPEAPRLPEQRAAFLARAQALIPHADGDVGLQALLSFLQAPQLDPLRAAPHWDELLQANALVSFELQGDAGQLICQRPAVQAAARTLEASQTPGERAHCLVEGAQRPVARLHGAIKGVWGAQTSGANIVSFNLAAFNSYGKEQGANAPVGDAAVFAYTTALNALLDRDARSCVQVGDASTVFWAEAPHPFDGEFTLADLFGASDNPDRGRDAVRALFRAVQSGQMPKEVGATRFFVLGLSPNAARISVRFWLPALPFAELAPRLVQHFEDIRMARRFDSDPESPSLFRLLTSLAVLGKADNIPPRLAGEWMRAILEGRPLPAGLLNAAVQRCKAERDVPYLRACVIKAWLNRQRPSLPDPHRPPQTFKEALDMDITEPAYRLGRLFATLERIQEQAQPGINATIRDRYYGAASTTPVAVFTTLLRLKNAHLKKLGDGQGAYFEKLIGEVLAPLAEFPRQLTLPEQGQFALGYYHQRQAFFIKKSESNTDQTQGD
>NZ_CP040709.1|WP_138857963.1|3729400_3730048_+|type-I-C-CRISPR-associated-protein-Cas5
MNSYCLQVVGDYACFTRPEMKVERVSYDVITPSAARALFETILWKPAIRWRIRRIEVLQPIRWINLRRNEVGAVISTSNVQQAMNAGAGSLALYVEDERQQRAGLFLRDVAYRVHAELDVRTGEPRQKYEEMFQRRAGKGQWVNQPYLGCREFAADVRLVDAAAPGPVPIPETRDLGWMLHDLDFGNSASPQPRFFRAQMQAGVIEVPAFGEAAA
>NZ_CP040709.1|WP_138857962.1|3729206_3729389_+|hypothetical-protein
MNHLSHLLREQSLAALLRELRLLRGQPWYRYCMAWLIVAAHSSARVGLLWFVVQQVISKK
>NZ_CP040709.1|WP_138857961.1|3726711_3729045_+|CRISPR-associated-endonuclease-Cas3''
MASSQGEPSPKGRLIAHSANSSGKVHGLAEHLHKVAARAAEFSAAWGDPCFARLAGAWHDIGKARPGFQRHIGRDPDAHIEGKVAGAEKTHSAAGALHAQTALAMCLDAQSAELLARPLQYLIAGHHAGLADWQAQEGRVGLAARLASSSAQTEYAEATQGLKEAGQDVAPAPDAQALVAAARAVLGSKDKLARALALRMLFSALVDADFLDTEAHFNDEQAARRGSFQPIAQYSEQLQAHLRAMAERVQAQGQAEHPVMRARSDVLQACLARAEEAPGVFTLTVPTGGGKTLSSLAFALEHARLHGLRRVVYAIPYTSIIEQTASVFADIFGADQVIEHHSQADRAPEAESGASRLACENWDAPLIVTTNVQFFESLFAASTSRCRKLHRLAGSVIVLDEAQMLPPAFLQPILDALRALLTQYRISLVLCTATQPVLTSREAFDPRQSLRGLPAPQPIVDPVPLFAALRRTQIHWPADLNAATELPALGESLQREPSALAILNTRADAMALAQLLPREPTLHLSAALCGAHRAQVVGEIRARLAAGTPLHVISTQLIEAGVDVDFPVVWRALAGLDSIAQAAGRCNREGRRERGAVNVFVRPIPKPLAQLRIAADTTRSLHAEGLPDALAPEAFERYFKAFYARQLLDEKQIVDLLDERSGPMEFSFRTAADRFRLIDDQDQCALLIPLHRLLPGHEALAPLIGKLESGAADRWLLRSVQRYVLSVRQRQVDELLRTRSVKPLACGLYLLDDDTRYDSRFGLMPAERAIDATTMVQ
>NZ_CP040709.1|WP_138857960.1|3725369_3726593_+|Fic-family-protein
MDHPLRAGRTITQPTGYRAFIPAPLPPDPALQVDGPLLALLSQAERDLGRLDALSTLLPNPDLFVAMYVRHEAVLSSQIEGTQSTLEDVLAFESELVQDSTPKDVEEVVNYIRAMNHGLARLAELPLSLRLLREIHAELMQGVRGGDKSPGEFRSSQNWIGGAGSTLRNAAFIPPPPHELMKALGDLERFLHDSREQLPLLVRCALAHAQFETIHPFLDGNGRVGRLLITLMLCAEGALSRPLLYLSLFLKTHRAEYYDRLTAIRSQGHWEQWVAFFLRGVSQTARAATATARSIMQMREAHRLAVVQNARALALLDRLMVQPNVSAPRAAQWLDCSFPTATKLLIDFESRGWLREVTGFGRNRQWRYQPYLDLFHQEALDGSMSAVLAPAQVTGSAFSGLPPAPST
>NZ_CP040709.1|WP_138857959.1|3723766_3725206_+|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-beta
MSMNLVTLLYLLASICFIQALKGLSHPTTSIRGNVFGMVGMTIAAGTTAALIGTLAKQLGAVNEWFGLSYVMVGLLIGGGLGAYMAAKVEMTKMPELVAFMHSMIGLAAVCIAVAAVAEPYALIPGLARGAPIPMGNRLELALGALIGAITFSGSVIAFGKLSGKYKFRLFQGAPVSFPGQHMLNLVLGVTMLGLTGYFTFTENWMAFAIVCAIAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSLGNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFSVILGGFGGEAVAAQGAQQQRSVKSGSADDAAFILGNAETVVIVPGYGLAVARAQHAVKELAEKLIHKGITVKYAIHPVAGRMPGHMNVLLAEAEVPYDQVFEMEDINGEFGQVDVAIVLGANDVVNPAAMTKGSPIYGMPILEAYKAKTIIVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKVVEDMVKAVE
>NZ_CP040709.1|WP_138857969.1|3738425_3739226_-|methyltransferase-domain-containing-protein
MIDPLRDPPPIQFDDGAAYERLMGHWSRLAGEQFLDWLAPAPAQHWLDIGCGNGAFTELLLTRTQPASVRAFDPSAGQLDYARQRVAPGQPVHWARAEAERLPVPDASADGALMALVLFFVPDPAAGLAEMVRAVRPGGTLAAYHWDLLNGGFPLADIGAEMKQMGLPPRLPPSAAISRPEASAALWQQAGLQQVQVRTIEVQRQFAHFDDYWHSAAASNTLRPMFDAMSEATRGELQARVRQRLQDSGGAITVRARATAVRGVRP
>NZ_CP040709.1|WP_138858443.1|3739231_3740011_-|PKD-domain-containing-protein
MVAANSPALVAGSAQDRLVLARLDAAGRELWRSTPQLGYSEQALALSANGGALLQLVPTASGSSAAVLAQRYAQSGVSNQAPLAQASASPSSGIAPLSVQFSAAGSSDPEGGALSYAWNFGDGRSSTLSNPALVFGEGIYNVQLTVTDALGAQTKTALTVTSTLAPAQPTQLSLASSNIVQNTSTTATLQLSSTAGTTVTLSASDPSLVSLPLSITVPKGQQSTTFGVTAKSLRKQTTVTLRATANGKTVSSLLTIRPR
>NZ_CP040709.1|WP_138857970.1|3741516_3743208_+|long-chain-fatty-acid--CoA-ligase
MAGGSVDKTWLKHYSPGVPAEIDAGRYGNLIDLIETAFKNHATKPAYKMMGASKSFAQIDEASKALAAYLQSLGLAPGDRVALMMPNVFQYPVAMAAVLRAGFVAVNVNPLYTPRELEHQLKDSGAKAIVIVENFLPTLKEVFDKVPTQHVVLAAIGDMFGFLKGSLINYVVRKKNQIQALQLPGMVRFNEALSHGRSLPYTRPEVRGDDIALLQYTGGTTGVSKGAVLLHRNVVANVLQCEAWYQPALQKVAAGESVHTVCALPLYHIFGFTANLMLSMHMGGVNVLIPNPRDIPAVFKELSQHKIHSFPAVNTLFNAMANHADFNSVDWSHLVICVGGGMAVQQATAKLWLEKTGCPICEGYGLSETAPVATCNPTDSTAYTGTIGLPVPSTELKLLDDEGFEVAAPGPGEIAIKGPQVMAGYWQRPDETAKVMTPDGFFRTGDVGMVDERGFFKIVDRKKDMILVSGFNVYPNEIEDVLASMPGILECAAVGVPDEKAGEAVKVVIVKKDDSITETQVRAYCEANLTGYKRPKVVEFRSELPKTPVGKILRRELRDKPKA
>NZ_CP040709.1|WP_138857971.1|3743292_3744015_+|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MNARFFVDLPLGPAGQELDLPAGAARHVQVLRAQPGDVLTLFDGRADLAWQAEVLLMGRAQVRVRLLSFQAIERELPRPLHLALVMPANDRMDFLVEKATELGVTSIQPLMSERSVLRLSGERAEKKRAHWQGVAQAAAEQCGRVRVPSIAAVQALSAWLNSLGPAEGSLRRLLLSPQAQGLQAAEGAEGVLSLSGPEGGLSPAEEALAQAAGFAPIGLGPRILRADTAPLALLAWWGLR
>NZ_CP040709.1|WP_138857972.1|3743988_3744435_-|hypothetical-protein
MKPAFRALLGLLAGLMTAVMIIALIETLGHKVWPLPAADGLNLRDPQVMAALMAKAPLGALASVVLAWCAGAASGAWIGFRLAGQPHARSVGLGVAGVIWLATGANLLAIPHPHWMMAGGLLGVPLSGWLVVRLLQARVASAQTPPSE
>NZ_CP040709.1|WP_138857973.1|3744431_3745670_-|class-I-SAM-dependent-RNA-methyltransferase
MSQFALFLPCPSGVEPLLLEEVQALGLKAETARGGVRLPRASLVDAMKLNLHSRLATRVLVELVQGPYRDEADLYTLAWKVDWNAWLTPEHRFKVDCTARQSPLKSLHFAALKVKDALCDQIRDTQGERPSVDTRDPDLPILLHLEAEHATLYADSSGAPLFKRGWRFDKGDAPLKETLAAAMLAAAGWRGTPESGGALNDPCCGSGTIAIEAALIACGMAPGLQRDFAFAHQRPYAELYPDWQRLTQAARDAVHAPAVPIFASDVAFRMVDFARRNAERAGVAHAIRFQGGDALERPAPDLPEGMAGTLMLNPPYGERIAVRGKAGAEDTERSAREQTEESDFFPRLAAHWKRQYTGGNPWSAWMLTPDRDLPKRMRLKESRKVPMWNGPIECRLFRFDLVAGSNRNKDTA
>NZ_CP040709.1|WP_138857974.1|3745805_3747293_-|RNA-polymerase-factor-sigma-54
MKPSLQLRQSQHLALTPQLQQSIRLLQLSTLELQQEVEQMLDSNPLLELDADEDLPLPGADSVSQVVAETREERIEAAGEGGDEVRELQADDFGTTEHEDWANGTEGDDFDGIRELPALGNAVDDDESPRGEAQSAATSLTEHLLGQLIGHALSDLDRDAVLLLIGSLNADGYLADELEALADDLAAKHTEPREELLDSLRMALALVQSLDPAGVGARDLSECLLLQLREQAAHPQCELATKVCAKHLELLARRDWRRLALLTHSDEPQLRLALALIARLEPKPGRAFGESDNTPVVPDVIVRRQGRQWVAQINPEVCPKLRVNELYARLLKNHRGSSLAGPLQEARWFIKNIQQRFDTIQRVSQAIVERQDGFFNHGELAMRPLVLREIAEELGLHESTISRVTTAKYMATPHGTFELKYFFGSGLNTEAGGEASSTAVRALIRQFIDAESKKKPLSDSALAAMLEEQGIQCARRTVAKYREGMKIPTAPLRKE
>NZ_CP040709.1|WP_138857975.1|3747311_3748064_-|LPS-export-ABC-transporter-ATP-binding-protein
MSPQTSRLEAEGLQKSYGVRKVVKDVHVSVAGGEVVGLLGPNGAGKTTSFYMIVGLVRADAGVIRIDGQEVQHQPIHRRSRLGLSYLPQEASIFRKLNVEENIRAVLELQLDENGRPWAKSRIDTALDALLHELSIERLRDTPAPALSGGERRRVEIARALATQPRFILLDEPFAGVDPIAVLEIQRIISFLKERGIGVLITDHNVRETLGICDRAYIISEGRVLAEGQPEAIVANPDVRKVYLGEHFRM
>NZ_CP040709.1|WP_138857976.1|3748149_3748779_-|lipopolysaccharide-transport-periplasmic-protein-LptA
MSARSESVSAPALLLLALAVFVALPGHAAKDDRHQPVSIESTASATLSSKTGRLEWAGPVLLVQGSLQLRAARLEAERRNDDTVLALASGEAGNPVRFSQALSRPGEQMEGSAERIEYDSRAETVRFLGAASVRTLANGKLVEELTGAAILYNARTEVLSVEPGAGSAQDKGKVRMVLMPRQSASAPAPAASGVNLQSSPALTPKPPTR
>NZ_CP040709.1|WP_138857977.1|3748762_3749434_-|thiol:disulfide-interchange-protein-DsbA/DsbL
MTHAFTRRTTLSLAAAALAPAVLAQEQPRAGQHFRKLGKPLASAGGKIEIVEFFWYGCPACNAFEPVLQDWVKRLPPNVEFKHSHIGGRAQMRPHQRLFFVLQAMGVEHQFRSAIFAAIHQQHQALDTPEAMVKLLQPLGLDAARFNSTWAAFDPKAFSGARIAQADKLAEAYGLDGVPMLGIGGLYTTSPAQAAGGERMNQLDGSRRALAVAEYLIRNLGKV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040709_4	4.25\|3736652\|33\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3736652-3736684	33	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	2012117-2012149	6	0.818
NZ_CP040709_4	4.26\|3736722\|35\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3736722-3736756	35	NZ_CP054608	Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed9, complete sequence	20637-20671	6	0.829
NZ_CP040709_4	4.9\|3735512\|34\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3735512-3735545	34	DQ674738	Aeromonas phage phiO18P, complete genome	7086-7119	7	0.794
NZ_CP040709_4	4.37\|3737507\|33\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3737507-3737539	33	NZ_CP050953	Rhodococcus sp. DMU1 plasmid unnamed	673954-673986	7	0.788
NZ_CP040709_4	4.38\|3737577\|33\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3737577-3737609	33	NC_019408	Caulobacter phage CcrRogue, complete genome	58025-58057	7	0.788
NZ_CP040709_4	4.2\|3735015\|33\|NZ_CP040709\|CRISPRCasFinder,CRT	3735015-3735047	33	NC_020548	Azoarcus sp. KH32C plasmid pAZKH, complete sequence	96174-96206	8	0.758
NZ_CP040709_4	4.20\|3736297\|33\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3736297-3736329	33	NZ_CP025513	Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence	627774-627806	8	0.758
NZ_CP040709_4	4.20\|3736297\|33\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3736297-3736329	33	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	187600-187632	8	0.758
NZ_CP040709_4	4.20\|3736297\|33\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3736297-3736329	33	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	55582-55614	8	0.758
NZ_CP040709_4	4.22\|3736438\|34\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3736438-3736471	34	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	1637606-1637639	8	0.765
NZ_CP040709_4	4.22\|3736438\|34\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3736438-3736471	34	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	790472-790505	8	0.765
NZ_CP040709_4	4.29\|3736936\|34\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3736936-3736969	34	NZ_LN832562	Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence	234972-235005	8	0.765
NZ_CP040709_4	4.29\|3736936\|34\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3736936-3736969	34	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	321466-321499	8	0.765
NZ_CP040709_4	4.37\|3737507\|33\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3737507-3737539	33	NZ_CP019603	Croceicoccus marinus strain E4A9 plasmid pCME4A9I, complete sequence	410411-410443	8	0.758
NZ_CP040709_4	4.37\|3737507\|33\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3737507-3737539	33	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	1516959-1516991	8	0.758
NZ_CP040709_4	4.40\|3737718\|35\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3737718-3737752	35	MN094788	Achromobacter phage Motura, complete genome	88977-89011	8	0.771
NZ_CP040709_4	4.47\|3738215\|34\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3738215-3738248	34	NZ_CP033429	Burkholderia gladioli strain Burkholderia gladioli Co14 plasmid p1, complete sequence	3464-3497	8	0.765
NZ_CP040709_4	4.2\|3735015\|33\|NZ_CP040709\|CRISPRCasFinder,CRT	3735015-3735047	33	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	597226-597258	9	0.727
NZ_CP040709_4	4.2\|3735015\|33\|NZ_CP040709\|CRISPRCasFinder,CRT	3735015-3735047	33	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	246532-246564	9	0.727
NZ_CP040709_4	4.2\|3735015\|33\|NZ_CP040709\|CRISPRCasFinder,CRT	3735015-3735047	33	NZ_CP034811	Paracoccus sp. Arc7-R13 plasmid unnamed1, complete sequence	17117-17149	9	0.727
NZ_CP040709_4	4.2\|3735015\|33\|NZ_CP040709\|CRISPRCasFinder,CRT	3735015-3735047	33	NZ_CP031079	Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence	364190-364222	9	0.727
NZ_CP040709_4	4.2\|3735015\|33\|NZ_CP040709\|CRISPRCasFinder,CRT	3735015-3735047	33	NZ_CP024426	Paracoccus yeei strain TT13 plasmid pTT13-4, complete sequence	103486-103518	9	0.727
NZ_CP040709_4	4.2\|3735015\|33\|NZ_CP040709\|CRISPRCasFinder,CRT	3735015-3735047	33	NZ_CP020445	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed5, complete sequence	43307-43339	9	0.727
NZ_CP040709_4	4.2\|3735015\|33\|NZ_CP040709\|CRISPRCasFinder,CRT	3735015-3735047	33	NZ_CP044079	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence	57157-57189	9	0.727
NZ_CP040709_4	4.4\|3735156\|34\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3735156-3735189	34	NZ_CP030772	Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence	236916-236949	9	0.735
NZ_CP040709_4	4.8\|3735442\|33\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3735442-3735474	33	MN855777	Bacteriophage sp. isolate 33, complete genome	26283-26315	9	0.727
NZ_CP040709_4	4.9\|3735512\|34\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3735512-3735545	34	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	747378-747411	9	0.735
NZ_CP040709_4	4.20\|3736297\|33\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3736297-3736329	33	NZ_CP034811	Paracoccus sp. Arc7-R13 plasmid unnamed1, complete sequence	164839-164871	9	0.727
NZ_CP040709_4	4.28\|3736865\|34\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3736865-3736898	34	NZ_CP042332	Bosea sp. F3-2 plasmid pB32-1, complete sequence	429907-429940	9	0.735
NZ_CP040709_4	4.31\|3737078\|34\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3737078-3737111	34	NC_006675	Gluconobacter oxydans 621H plasmid pGOX4, complete sequence	10450-10483	9	0.735
NZ_CP040709_4	4.32\|3737149\|34\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3737149-3737182	34	NZ_CP016083	Streptomyces sp. SAT1 plasmid unnamed3, complete sequence	694871-694904	9	0.735
NZ_CP040709_4	4.32\|3737149\|34\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3737149-3737182	34	NC_048047	Caulobacter phage CcrBL9, complete genome	72514-72547	9	0.735
NZ_CP040709_4	4.2\|3735015\|33\|NZ_CP040709\|CRISPRCasFinder,CRT	3735015-3735047	33	NZ_CP013426	Burkholderia sp. MSMB0856 plasmid pMSMB0856, complete sequence	98800-98832	10	0.697
NZ_CP040709_4	4.2\|3735015\|33\|NZ_CP040709\|CRISPRCasFinder,CRT	3735015-3735047	33	GU339467	Mycobacterium phage RedRock, complete genome	37583-37615	10	0.697
NZ_CP040709_4	4.2\|3735015\|33\|NZ_CP040709\|CRISPRCasFinder,CRT	3735015-3735047	33	NZ_CP006368	Aureimonas sp. AU20 plasmid pAU20a, complete sequence	51943-51975	10	0.697
NZ_CP040709_4	4.9\|3735512\|34\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3735512-3735545	34	NZ_CP024582	Roseomonas sp. FDAARGOS_362 plasmid unnamed1, complete sequence	270446-270479	10	0.706
NZ_CP040709_4	4.9\|3735512\|34\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3735512-3735545	34	NZ_CP025188	Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence	367289-367322	10	0.706
NZ_CP040709_4	4.22\|3736438\|34\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3736438-3736471	34	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	365043-365076	10	0.706
NZ_CP040709_4	4.28\|3736865\|34\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3736865-3736898	34	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	1503249-1503282	10	0.706
NZ_CP040709_4	4.28\|3736865\|34\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3736865-3736898	34	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	670434-670467	10	0.706
NZ_CP040709_4	4.28\|3736865\|34\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3736865-3736898	34	NZ_CP035513	Haematobacter massiliensis strain OT1 plasmid pOT1-3, complete sequence	275776-275809	10	0.706
NZ_CP040709_4	4.37\|3737507\|33\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3737507-3737539	33	NC_015583	Novosphingobium sp. PP1Y plasmid Mpl, complete sequence	990354-990386	10	0.697
NZ_CP040709_4	4.44\|3738002\|33\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3738002-3738034	33	NZ_CP035710	Sphaerotilus natans subsp. sulfidivorans strain D-507 plasmid pSna507_unt10, complete sequence	255655-255687	10	0.697
NZ_CP040709_4	4.45\|3738072\|35\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3738072-3738106	35	NZ_CP043619	Rhodobacteraceae bacterium SH-1 plasmid p1, complete sequence	63393-63427	10	0.714
NZ_CP040709_4	4.45\|3738072\|35\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3738072-3738106	35	NZ_CP042263	Litoreibacter sp. LN3S51 plasmid unnamed2, complete sequence	24157-24191	10	0.714
NZ_CP040709_4	4.45\|3738072\|35\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3738072-3738106	35	NZ_CP051544	Paracoccus sanguinis strain OM2164 plasmid pPspOM44, complete sequence	41978-42012	10	0.714
NZ_CP040709_4	4.47\|3738215\|34\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3738215-3738248	34	NC_007961	Nitrobacter hamburgensis X14 plasmid 3, complete sequence	13990-14023	10	0.706
NZ_CP040709_4	4.28\|3736865\|34\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3736865-3736898	34	NZ_CP040251	Mycobacterium avium subsp. hominissuis strain 101115 plasmid unnamed1	32469-32502	11	0.676
NZ_CP040709_4	4.31\|3737078\|34\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3737078-3737111	34	NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	369810-369843	11	0.676
NZ_CP040709_4	4.31\|3737078\|34\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3737078-3737111	34	NZ_CP053207	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1C, complete sequence	386875-386908	11	0.676
NZ_CP040709_4	4.45\|3738072\|35\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3738072-3738106	35	NZ_CP048351	Raoultella ornithinolytica strain 23 plasmid p23_B, complete sequence	40657-40691	11	0.686
NZ_CP040709_4	4.47\|3738215\|34\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3738215-3738248	34	NZ_CP013524	Rhizobium phaseoli strain R744 plasmid pRphaR744b, complete sequence	303175-303208	11	0.676
NZ_CP040709_4	4.47\|3738215\|34\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3738215-3738248	34	NZ_CP013576	Rhizobium phaseoli strain N671 plasmid pRphaN671b, complete sequence	311908-311941	11	0.676
NZ_CP040709_4	4.47\|3738215\|34\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3738215-3738248	34	NZ_CP013548	Rhizobium phaseoli strain R611 plasmid pRetR611a, complete sequence	311904-311937	11	0.676
NZ_CP040709_4	4.47\|3738215\|34\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3738215-3738248	34	NZ_CP013533	Rhizobium phaseoli strain R650 plasmid pRphaR650a, complete sequence	311904-311937	11	0.676
NZ_CP040709_4	4.47\|3738215\|34\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3738215-3738248	34	NZ_CP013543	Rhizobium phaseoli strain R620 plasmid pRphaR620a, complete sequence	315318-315351	11	0.676
NZ_CP040709_4	4.47\|3738215\|34\|NZ_CP040709\|CRISPRCasFinder,CRT,PILER-CR	3738215-3738248	34	NZ_CP013570	Rhizobium phaseoli strain N771 plasmid pRphaN771b, complete sequence	311908-311941	11	0.676

1. spacer 4.25|3736652|33|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.818

attgtgcca-acacgcgccggcatcctgggcggc	CRISPR spacer
-tcgcgcaacacgcgcgccggcatcctgcgcggc	Protospacer
 *.*.** * **.*************** *****

2. spacer 4.26|3736722|35|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054608 (Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed9, complete sequence) position: , mismatch: 6, identity: 0.829

aacggcaccgccattgccaacctggccgacaacgc	CRISPR spacer
aacggcaccgccattgccgacctgcccgacggctg	Protospacer
******************.***** *****..*

3. spacer 4.9|3735512|34|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to DQ674738 (Aeromonas phage phiO18P, complete genome) position: , mismatch: 7, identity: 0.794

cgcgtggccgagccgcatcacgatgggacgccgc	CRISPR spacer
cgggtttgtgagccgcaccacgatggcacgccgc	Protospacer
** **   .********.******** *******

4. spacer 4.37|3737507|33|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050953 (Rhodococcus sp. DMU1 plasmid unnamed) position: , mismatch: 7, identity: 0.788

ggcggtgatgctggccagccgtgcggt--ggccaa	CRISPR spacer
cgcggtgatgcgggccagccgggcggccgggtc--	Protospacer
 ********** ********* ****.  **.*

5. spacer 4.38|3737577|33|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NC_019408 (Caulobacter phage CcrRogue, complete genome) position: , mismatch: 7, identity: 0.788

ggcctgcccccgggcaccgtcgaaatcgtcggc	CRISPR spacer
gtcgtgcccctgggcaccgacgaaatcgacacc	Protospacer
* * ******.******** ******** *. *

6. spacer 4.2|3735015|33|NZ_CP040709|CRISPRCasFinder,CRT matches to NC_020548 (Azoarcus sp. KH32C plasmid pAZKH, complete sequence) position: , mismatch: 8, identity: 0.758

gccctggccggcgcgacgatcccgcccggcctt	CRISPR spacer
cgcctggccggcgagacgatccagcctgtcgtg	Protospacer
  *********** ******** ***.* * *

7. spacer 4.20|3736297|33|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025513 (Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.758

cgcacgccctccggcgtctggctgcacagcacg	CRISPR spacer
accacgccgtccggcggctggctgcagtcctcg	Protospacer
  ****** ******* *********   * **

8. spacer 4.20|3736297|33|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 8, identity: 0.758

cgcacgccctccggcgtctggctgcacagcacg	CRISPR spacer
gccacgccgtccggcggctggctgcaatcctcg	Protospacer
  ****** ******* *********   * **

9. spacer 4.20|3736297|33|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 8, identity: 0.758

cgcacgccctccggcgtctggctgca-cagcacg	CRISPR spacer
gccacgccgtccggcggctggctgcagtcgaac-	Protospacer
  ****** ******* ********* . * **

10. spacer 4.22|3736438|34|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

ggccagatgctggccgatctcgggg--ggccaacgg	CRISPR spacer
cgcgagatgctggccgatttcggggtaatcgaac--	Protospacer
 ** **************.******  . * ***

11. spacer 4.22|3736438|34|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

ggccagatgctggccgatctcgggg--ggccaacgg	CRISPR spacer
cgcgagatgctggccgatttcggggtaatcgaac--	Protospacer
 ** **************.******  . * ***

12. spacer 4.29|3736936|34|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 8, identity: 0.765

tgtgatgctggcgcgggacaaggcgatccgggcc	CRISPR spacer
cgcgatgctggcgcgggacggggcgatcagctcg	Protospacer
.*.****************..******* *  *

13. spacer 4.29|3736936|34|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 8, identity: 0.765

tgtgatgctggcgcgggacaaggcgatccgggcc	CRISPR spacer
gctgacggccgcgcgggacgaggcgatgcgggcc	Protospacer
  ***.* . *********.******* ******

14. spacer 4.37|3737507|33|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019603 (Croceicoccus marinus strain E4A9 plasmid pCME4A9I, complete sequence) position: , mismatch: 8, identity: 0.758

ggcggtgatgctggccagccgtgcggtggccaa	CRISPR spacer
cgcggtcatgctggccagccgggcgggcggctg	Protospacer
 ***** ************** ****  * * .

15. spacer 4.37|3737507|33|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 8, identity: 0.758

ggcggtgatgctggccagccgtgcggtggccaa	CRISPR spacer
gttcgtgatgctggtccgccgtgcggtgccgca	Protospacer
* . **********.* *********** *  *

16. spacer 4.40|3737718|35|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to MN094788 (Achromobacter phage Motura, complete genome) position: , mismatch: 8, identity: 0.771

tgatcgctcaatgcgcttgcgctcggcttcagtag	CRISPR spacer
tactcgcgcaatgcgcttgcgttcggcttcgcggg	Protospacer
*. **** *************.********.  .*

17. spacer 4.47|3738215|34|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033429 (Burkholderia gladioli strain Burkholderia gladioli Co14 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.765

ctgga---ggccggcagcatgagcggcattcggcccg	CRISPR spacer
---gatctggtcggcagcatgagcggcattcgagatg	Protospacer
   **   **.*********************.  .*

18. spacer 4.2|3735015|33|NZ_CP040709|CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.727

gccctggccggcgcgacgatcccgcccggcctt	CRISPR spacer
acattggccggcccgacgagcccgcccgacgcc	Protospacer
.* .******** ****** ********.* ..

19. spacer 4.2|3735015|33|NZ_CP040709|CRISPRCasFinder,CRT matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.727

gccctggccggcgcgacgatcccgcccggcctt	CRISPR spacer
acattggccggcccgacgagcccgcccgacgcc	Protospacer
.* .******** ****** ********.* ..

20. spacer 4.2|3735015|33|NZ_CP040709|CRISPRCasFinder,CRT matches to NZ_CP034811 (Paracoccus sp. Arc7-R13 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

gccctggccggcgcgacgatcccgcccggcctt	CRISPR spacer
gccttggctggcgcgacgatcccgacgcccgcg	Protospacer
***.****.*************** *   * .

21. spacer 4.2|3735015|33|NZ_CP040709|CRISPRCasFinder,CRT matches to NZ_CP031079 (Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence) position: , mismatch: 9, identity: 0.727

gccctggccggcgcgacgatcccgcccggcctt	CRISPR spacer
tccagcaccggcgcgaggatcccgccgggcccg	Protospacer
 **   .********* ********* ****.

22. spacer 4.2|3735015|33|NZ_CP040709|CRISPRCasFinder,CRT matches to NZ_CP024426 (Paracoccus yeei strain TT13 plasmid pTT13-4, complete sequence) position: , mismatch: 9, identity: 0.727

gccctggccggcgcgacgatcccgcccggcctt	CRISPR spacer
tccagcaccggcgcgaggatcccgccgggcccg	Protospacer
 **   .********* ********* ****.

23. spacer 4.2|3735015|33|NZ_CP040709|CRISPRCasFinder,CRT matches to NZ_CP020445 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.727

gccctggccggcgcgacgatcccgcccggcctt	CRISPR spacer
tccagcaccggcgcgaggatcccgccgggcccg	Protospacer
 **   .********* ********* ****.

24. spacer 4.2|3735015|33|NZ_CP040709|CRISPRCasFinder,CRT matches to NZ_CP044079 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.727

gccctggccggcgcgacgatcccgcccggcctt	CRISPR spacer
tccagcaccggcgcgaggatcccgccgggcccg	Protospacer
 **   .********* ********* ****.

25. spacer 4.4|3735156|34|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030772 (Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence) position: , mismatch: 9, identity: 0.735

atgtgcg-----gcctttcatgccacgggaacgccgccc	CRISPR spacer
-----cgccagcgtctttcctgccacgggaacgcagcct	Protospacer
     **     *.***** ************** ***.

26. spacer 4.8|3735442|33|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to MN855777 (Bacteriophage sp. isolate 33, complete genome) position: , mismatch: 9, identity: 0.727

gttgaagtggtgaacaacgccgccagcggcacg	CRISPR spacer
tttacgctggtgaacatcgtcgccagcggcagc	Protospacer
 **. . ********* **.***********

27. spacer 4.9|3735512|34|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.735

cgcgtggccgagccgcatcacgatgggacgccgc------	CRISPR spacer
cgcgtggccgagccgctccacgat------ctgcgcgatc	Protospacer
**************** .******      *.**

28. spacer 4.20|3736297|33|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034811 (Paracoccus sp. Arc7-R13 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

cgcacgccctccggcgtctggctgcacagcacg	CRISPR spacer
accacgccctcgggcggctggctgcagtcgtcg	Protospacer
  ********* **** *********     **

29. spacer 4.28|3736865|34|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042332 (Bosea sp. F3-2 plasmid pB32-1, complete sequence) position: , mismatch: 9, identity: 0.735

atgccttcgggcgtgcgcgccgcgctcgaaaaag	CRISPR spacer
ccgacaaaggtcgtgcgcgtcgcgctcgaaaacg	Protospacer
 .* *   ** ********.************ *

30. spacer 4.31|3737078|34|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NC_006675 (Gluconobacter oxydans 621H plasmid pGOX4, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcaggggcgccgcaaagcgctcggccagctca	CRISPR spacer
gtccgccagcgccgcaaagcgctcggcctggtcc	Protospacer
 * *.  .******************** * **

31. spacer 4.32|3737149|34|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.735

gggtggccgggaatccgtactggctgaccctgga	CRISPR spacer
ccgtgggcgggaacccgtactggctgatgatcaa	Protospacer
  **** ******.*************.  * .*

32. spacer 4.32|3737149|34|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NC_048047 (Caulobacter phage CcrBL9, complete genome) position: , mismatch: 9, identity: 0.735

gggtggccgggaatccgtactggctgaccctgga	CRISPR spacer
tgttcgccgggaagccgtactggccgaccggcgg	Protospacer
 * * ******** **********.****   *.

33. spacer 4.2|3735015|33|NZ_CP040709|CRISPRCasFinder,CRT matches to NZ_CP013426 (Burkholderia sp. MSMB0856 plasmid pMSMB0856, complete sequence) position: , mismatch: 10, identity: 0.697

gccctggccggcgcgacgatcccgcccggcctt	CRISPR spacer
acattggccggcgcgacgatctcgcgcgcgacg	Protospacer
.* .*****************.*** **   .

34. spacer 4.2|3735015|33|NZ_CP040709|CRISPRCasFinder,CRT matches to GU339467 (Mycobacterium phage RedRock, complete genome) position: , mismatch: 10, identity: 0.697

gccctggccggcgcgacgatcccgcccggcctt	CRISPR spacer
gagctggccggcgggacgatcccgtcctcgtag	Protospacer
*  ********** **********.**   .

35. spacer 4.2|3735015|33|NZ_CP040709|CRISPRCasFinder,CRT matches to NZ_CP006368 (Aureimonas sp. AU20 plasmid pAU20a, complete sequence) position: , mismatch: 10, identity: 0.697

gccctggccggcgcgacgatcccgcccggcctt	CRISPR spacer
gatgccaccggctcgacgatcgcgcccggccga	Protospacer
* . . .***** ******** *********

36. spacer 4.9|3735512|34|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024582 (Roseomonas sp. FDAARGOS_362 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

cgcgtggccgagccgcatcacgatgggacgccgc	CRISPR spacer
ccatcagccgtgccgcatcacgattggacgatac	Protospacer
*   ..**** ************* ***** ..*

37. spacer 4.9|3735512|34|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025188 (Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence) position: , mismatch: 10, identity: 0.706

cgcgtggccgagccgcatcacgatgggacgccgc	CRISPR spacer
ccatcagccgtgccgcatcacgattggacgatac	Protospacer
*   ..**** ************* ***** ..*

38. spacer 4.22|3736438|34|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 10, identity: 0.706

ggccagatgctggccgatctcggggggccaacgg	CRISPR spacer
cgcaagatgctggcctatctcggggccgagctgg	Protospacer
 ** *********** *********    . .**

39. spacer 4.28|3736865|34|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 10, identity: 0.706

atgccttcgggcgtgcgcgccgcgctcgaaaaag	CRISPR spacer
gacagccagggcgtgcgcgctgcgatcgaaaaag	Protospacer
.    .. ************.*** *********

40. spacer 4.28|3736865|34|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 10, identity: 0.706

atgccttcgggcgtgcgcgccgcgctcgaaaaag	CRISPR spacer
gacagccagggcgtgcgcgctgcgatcgaaaaag	Protospacer
.    .. ************.*** *********

41. spacer 4.28|3736865|34|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035513 (Haematobacter massiliensis strain OT1 plasmid pOT1-3, complete sequence) position: , mismatch: 10, identity: 0.706

atgccttcgggcgtgcgcgccgcgctcgaaaaag	CRISPR spacer
gttccttcgggcgggcgcgcctcgctcaccggaa	Protospacer
.* ********** ******* *****.  ..*.

42. spacer 4.37|3737507|33|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NC_015583 (Novosphingobium sp. PP1Y plasmid Mpl, complete sequence) position: , mismatch: 10, identity: 0.697

ggcggtgatgctggccagccgtgcggtggccaa	CRISPR spacer
cgaactgatgctgaccggccgtgcggtggatgc	Protospacer
 * . ********.**.************ ..

43. spacer 4.44|3738002|33|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035710 (Sphaerotilus natans subsp. sulfidivorans strain D-507 plasmid pSna507_unt10, complete sequence) position: , mismatch: 10, identity: 0.697

acgcacgagctgcaggcggtgcagtggatcgaa	CRISPR spacer
ggcggcgagctgcaggcggtgctgtcgatcccg	Protospacer
.   .***************** ** ****  .

44. spacer 4.45|3738072|35|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043619 (Rhodobacteraceae bacterium SH-1 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.714

ttcgttcagcaggccagcgcggccggcgatgacgc	CRISPR spacer
ctgacctggcaggccagcgtcgccggcgatgacga	Protospacer
.* .....***********. *************

45. spacer 4.45|3738072|35|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042263 (Litoreibacter sp. LN3S51 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.714

ttcgttcagcaggccagcgcggccggcgatgacgc	CRISPR spacer
ggggatcagcaggccagcgcggtcggtgatttcaa	Protospacer
   * *****************.***.***  *.

46. spacer 4.45|3738072|35|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP051544 (Paracoccus sanguinis strain OM2164 plasmid pPspOM44, complete sequence) position: , mismatch: 10, identity: 0.714

ttcgttcagcaggccagcgcggccggcgatgacgc	CRISPR spacer
gcggtgcagcaggcccgcgcggccggcgccaacct	Protospacer
 . ** ********* ************ ..** .

47. spacer 4.47|3738215|34|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NC_007961 (Nitrobacter hamburgensis X14 plasmid 3, complete sequence) position: , mismatch: 10, identity: 0.706

ctggaggccggcagcatgagcggcattcggcccg	CRISPR spacer
ctggaggccggcaacatgagcagctggctttaca	Protospacer
*************.*******.**   *  . *.

48. spacer 4.28|3736865|34|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040251 (Mycobacterium avium subsp. hominissuis strain 101115 plasmid unnamed1) position: , mismatch: 11, identity: 0.676

atgccttcgggcgtgcgcgccgcgctcgaaaaag	CRISPR spacer
tagccatcgggcgtgcgcggcgcgctgcgccgcg	Protospacer
  *** ************* ******  .  . *

49. spacer 4.31|3737078|34|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050083 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence) position: , mismatch: 11, identity: 0.676

ctgcaggggcgccgcaaagcgctcggccagctca	CRISPR spacer
agagcagggcgccgaaaagcgcgcggccaggccg	Protospacer
  .  .******** ******* ******* .*.

50. spacer 4.31|3737078|34|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053207 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1C, complete sequence) position: , mismatch: 11, identity: 0.676

ctgcaggggcgccgcaaagcgctcggccagctca	CRISPR spacer
agagcagggcgccgaaaagcgcgcggccaggccg	Protospacer
  .  .******** ******* ******* .*.

51. spacer 4.45|3738072|35|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048351 (Raoultella ornithinolytica strain 23 plasmid p23_B, complete sequence) position: , mismatch: 11, identity: 0.686

ttcgttcagcaggccagcgcggccggcgatgacgc	CRISPR spacer
gcgatcgagcaggcccgcgcgtccggcgatgagca	Protospacer
 . .*. ******** ***** **********

52. spacer 4.47|3738215|34|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013524 (Rhizobium phaseoli strain R744 plasmid pRphaR744b, complete sequence) position: , mismatch: 11, identity: 0.676

ctggaggccggcagcatgagcggcattcggcccg	CRISPR spacer
gcggagggcggcagcatgagcgtcatcgacttca	Protospacer
 .***** ************** ***. . ..*.

53. spacer 4.47|3738215|34|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013576 (Rhizobium phaseoli strain N671 plasmid pRphaN671b, complete sequence) position: , mismatch: 11, identity: 0.676

ctggaggccggcagcatgagcggcattcggcccg	CRISPR spacer
gcggagggcggcagcatgagcgtcatcgacttca	Protospacer
 .***** ************** ***. . ..*.

54. spacer 4.47|3738215|34|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013548 (Rhizobium phaseoli strain R611 plasmid pRetR611a, complete sequence) position: , mismatch: 11, identity: 0.676

ctggaggccggcagcatgagcggcattcggcccg	CRISPR spacer
gcggagggcggcagcatgagcgtcatcgacttca	Protospacer
 .***** ************** ***. . ..*.

55. spacer 4.47|3738215|34|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013533 (Rhizobium phaseoli strain R650 plasmid pRphaR650a, complete sequence) position: , mismatch: 11, identity: 0.676

ctggaggccggcagcatgagcggcattcggcccg	CRISPR spacer
gcggagggcggcagcatgagcgtcatcgacttca	Protospacer
 .***** ************** ***. . ..*.

56. spacer 4.47|3738215|34|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013543 (Rhizobium phaseoli strain R620 plasmid pRphaR620a, complete sequence) position: , mismatch: 11, identity: 0.676

ctggaggccggcagcatgagcggcattcggcccg	CRISPR spacer
gcggagggcggcagcatgagcgtcatcgacttca	Protospacer
 .***** ************** ***. . ..*.

57. spacer 4.47|3738215|34|NZ_CP040709|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013570 (Rhizobium phaseoli strain N771 plasmid pRphaN771b, complete sequence) position: , mismatch: 11, identity: 0.676

ctggaggccggcagcatgagcggcattcggcccg	CRISPR spacer
gcggagggcggcagcatgagcgtcatcgacttca	Protospacer
 .***** ************** ***. . ..*.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

629275 : 637798

Acinetobacter_phage(42.86%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138858272.1\|629275_630766_+	anthranilate synthase component I	A0A0B5J984	Pandoravirus	5.5e-37	29.3
WP_138855347.1\|630848_631433_+	C26 family cysteine hydrolase domain-containing family	A0A0P0IKJ1	Acinetobacter_phage	3.1e-60	56.9
WP_138855348.1\|631429_632464_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_138855349.1\|632467_633493_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	2.3e-74	44.6
WP_138855350.1\|633498_634284_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	1.4e-63	54.2
WP_138855351.1\|634295_635018_+	uracil-DNA glycosylase	A0A1L5JKJ8	Bubaline_alphaherpesvirus	2.1e-42	46.4
WP_138855352.1\|635453_636644_+	elongation factor Tu	A0A1V0SLW6	Klosneuvirus	1.3e-12	28.1
WP_138855353.1\|636848_637232_+	preprotein translocase subunit SecE	NA	NA	NA	NA
WP_138855354.1\|637243_637798_+	transcription termination/antitermination protein NusG	G3MAW2	Bacillus_virus	5.4e-14	30.9

DBSCAN-SWA_2

1228081 : 1234254

Pseudomonas_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138855882.1\|1228081_1230010_-	DUF935 family protein	A4JWJ5	Burkholderia_virus	1.1e-125	59.6
WP_138855883.1\|1230012_1231428_-	hypothetical protein	Q5ZQY5	Pseudomonas_phage	1.1e-196	73.8
WP_138855884.1\|1231427_1232000_-	DUF3486 family protein	Q5ZQY6	Pseudomonas_phage	1.8e-65	73.5
WP_138855885.1\|1232006_1232321_-	hypothetical protein	Q5ZQY7	Pseudomonas_phage	7.5e-37	70.6
WP_138855886.1\|1232310_1232649_-	hypothetical protein	Q5ZQY8	Pseudomonas_phage	1.0e-23	48.5
WP_138855887.1\|1232645_1233215_-	hypothetical protein	NA	NA	NA	NA
WP_138855888.1\|1233211_1233871_-	transglycosylase SLT domain-containing protein	A4JWP4	Burkholderia_virus	1.6e-33	46.3
WP_138855889.1\|1233882_1234254_-	hypothetical protein	A4JWP3	Burkholderia_virus	4.6e-17	50.5

DBSCAN-SWA_3

1237521 : 1258399

Burkholderia_virus(33.33%)

transposase,integrase

attL 1240110:1240125|attR 1245033:1245048

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138855897.1\|1237521_1237785_+	DNA-binding protein	Q6QID3	Burkholderia_phage	9.1e-12	54.4
WP_138855898.1\|1237803_1238082_-	hypothetical protein	NA	NA	NA	NA
WP_138855899.1\|1238205_1238679_+	hypothetical protein	Q6QID6	Burkholderia_phage	9.9e-33	43.6
WP_138855900.1\|1238678_1238906_+	hypothetical protein	NA	NA	NA	NA
WP_138858302.1\|1238938_1239274_+	transcriptional regulator	NA	NA	NA	NA
WP_138855901.1\|1239303_1240206_+	hypothetical protein	Q6QID9	Burkholderia_phage	1.4e-35	37.7
1240110:1240125	attL	NA	NA	NA	NA
WP_138858303.1\|1240223_1242002_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A4JWN2	Burkholderia_virus	4.1e-156	54.5
WP_138858304.1\|1242088_1243267_+	AAA family ATPase	A4JWN1	Burkholderia_virus	2.4e-88	46.6
WP_138855902.1\|1243428_1243617_+	hypothetical protein	NA	NA	NA	NA
WP_138855903.1\|1243613_1244225_+	hypothetical protein	A0A0M5MXL4	Ralstonia_phage	1.9e-12	33.6
WP_138855904.1\|1244221_1244464_+	hypothetical protein	NA	NA	NA	NA
WP_138855905.1\|1244465_1244981_+	host-nuclease inhibitor protein Gam	A0A0C4UQY5	Shigella_phage	3.6e-44	54.7
WP_138855906.1\|1244977_1245199_+	hypothetical protein	NA	NA	NA	NA
1245033:1245048	attR	NA	NA	NA	NA
WP_138855907.1\|1245208_1246009_+	DUF1018 domain-containing protein	A4JWM5	Burkholderia_virus	5.8e-17	41.0
WP_138855908.1\|1245969_1246449_+	hypothetical protein	NA	NA	NA	NA
WP_138858305.1\|1246587_1247562_+	peptidase	A4JWJ9	Burkholderia_virus	1.1e-41	33.6
WP_138855909.1\|1247580_1248501_+	hypothetical protein	A4JWK0	Burkholderia_virus	5.2e-102	62.0
WP_138855910.1\|1248533_1248740_+	hypothetical protein	NA	NA	NA	NA
WP_138855911.1\|1248746_1249073_+	DUF2190 family protein	Q6QIB4	Burkholderia_phage	7.8e-21	59.3
WP_138855912.1\|1249092_1249596_+	DUF1320 family protein	NA	NA	NA	NA
WP_138855913.1\|1249595_1250042_+	hypothetical protein	NA	NA	NA	NA
WP_138855914.1\|1250073_1250814_+	hypothetical protein	A0A1W6JT83	Pseudomonas_phage	1.1e-17	28.9
WP_138855915.1\|1251005_1254326_+	tape measure protein	W8VLG7	Pseudomonas_phage	2.7e-39	38.0
WP_138855916.1\|1254322_1254721_+	hypothetical protein	A0A0M4UTA7	Ralstonia_phage	7.3e-21	43.1
WP_138855917.1\|1254724_1258399_+	hypothetical protein	A0A0M4U447	Ralstonia_phage	2.6e-181	35.5

DBSCAN-SWA_4

1318197 : 1325481

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138855967.1\|1318197_1319541_+	nucleotide sugar dehydrogenase	A0A127AXI2	Bacillus_phage	1.0e-74	39.2
WP_138855968.1\|1319541_1320648_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A0N9R0B2	Chrysochromulina_ericina_virus	1.1e-58	35.0
WP_138855969.1\|1320734_1321742_+	NAD-dependent epimerase/dehydratase family protein	A0A1V0SAI6	Catovirus	2.6e-30	29.1
WP_138855970.1\|1322131_1322680_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.1e-48	55.0
WP_138855971.1\|1322666_1323557_-	glucose-1-phosphate thymidylyltransferase RfbA	A0A291LA53	Escherichia_phage	2.0e-98	61.0
WP_138855972.1\|1323553_1324429_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
WP_138855973.1\|1324425_1325481_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.9e-88	48.0

DBSCAN-SWA_5

2425830 : 2432927

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138856862.1\|2425830_2426994_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	7.6e-50	33.2
WP_138856863.1\|2427243_2427933_+	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_138856864.1\|2428004_2429363_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	1.9e-31	28.0
WP_138856865.1\|2429414_2430362_-	sigma-70 family RNA polymerase sigma factor	F4YCU2	Synechococcus_phage	2.8e-26	33.6
WP_138858368.1\|2430395_2431337_-	peptidoglycan DD-metalloendopeptidase family protein	A0A1P8BKY1	Lactococcus_phage	1.1e-06	53.8
WP_138856866.1\|2431386_2432169_-	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.9e-29	41.3
WP_138856867.1\|2432165_2432927_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.6e-51	44.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040709

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection