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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP053417 Salmonella bongori strain 92-0238 chromosome, complete genome 4 crisprs DEDDh,RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,csa3,DinG 0 13 1 0

Results visualization

1. NZ_CP053417
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053417_1 2697430-2698492 TypeI-E I-E
17 spacers
cas3,cas8e,cse2gr11,cas7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053417_2 2714373-2714829 TypeI-E I-E
7 spacers
cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053417_3 3009315-3009405 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053417_4 3103199-3103398 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP053417_1 1.10|2698009|28|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT 2698009-2698036 28 NZ_CP048420 Sphingomonas insulae strain KCTC 12872 plasmid unnamed2, complete sequence 2179-2206 6 0.786
NZ_CP053417_1 1.4|2697643|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT 2697643-2697674 32 NZ_CP053574 Citrobacter sp. TSA-1 plasmid unnamed1, complete sequence 129359-129390 7 0.781
NZ_CP053417_1 1.4|2697643|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT 2697643-2697674 32 HE858210 Enterobacteria phage RB43, isolate RB43-GVA complete genome 77907-77938 7 0.781
NZ_CP053417_1 1.4|2697643|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT 2697643-2697674 32 MT334653 Buttiauxella phage vB_ButM_GuL6, complete genome 76988-77019 7 0.781
NZ_CP053417_1 1.4|2697643|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT 2697643-2697674 32 HE981739 Enterobacteria phage RB43, isolate RB43-GVA orf057::gfp complete genome 77910-77941 7 0.781
NZ_CP053417_1 1.4|2697643|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT 2697643-2697674 32 NC_007023 Enterobacteria phage RB43, complete genome 78305-78336 7 0.781
NZ_CP053417_1 1.13|2698188|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT 2698188-2698219 32 NZ_AP017309 Leptolyngbya sp. NIES-3755 plasmid plasmid1 DNA, complete genome 151722-151753 7 0.781
NZ_CP053417_1 1.13|2698188|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT 2698188-2698219 32 NZ_CP017244 Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence 1713683-1713714 8 0.75
NZ_CP053417_2 2.3|2714525|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT 2714525-2714556 32 NZ_CP013139 Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence 618545-618576 8 0.75
NZ_CP053417_1 1.5|2697704|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT 2697704-2697735 32 LR134125 Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5 727825-727856 9 0.719
NZ_CP053417_1 1.12|2698127|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT 2698127-2698158 32 NZ_CP035508 Haematobacter massiliensis strain OT1 plasmid pOT1-8, complete sequence 66938-66969 9 0.719
NZ_CP053417_1 1.14|2698249|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT 2698249-2698280 32 NZ_CP020744 Bacillus mycoides strain Gnyt1 plasmid unnamed1, complete sequence 390175-390206 9 0.719
NZ_CP053417_1 1.15|2698310|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT 2698310-2698341 32 NC_006872 Clostridium perfringens plasmid pBCNF5603 DNA, complete sequence 10274-10305 9 0.719
NZ_CP053417_1 1.16|2698371|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT 2698371-2698402 32 NC_006872 Clostridium perfringens plasmid pBCNF5603 DNA, complete sequence 10274-10305 9 0.719
NZ_CP053417_2 2.6|2714708|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT 2714708-2714739 32 MN693211 Marine virus AFVG_25M75, complete genome 30583-30614 9 0.719
NZ_CP053417_2 2.6|2714708|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT 2714708-2714739 32 MN693477 Marine virus AFVG_25M76, complete genome 1580-1611 9 0.719
NZ_CP053417_2 2.6|2714708|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT 2714708-2714739 32 MN693434 Marine virus AFVG_25M407, complete genome 30374-30405 9 0.719
NZ_CP053417_1 1.9|2697948|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT 2697948-2697979 32 NZ_CP049029 Fluviibacterium aquatile strain SC52 plasmid pSC52_1, complete sequence 310272-310303 10 0.688
NZ_CP053417_1 1.14|2698249|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT 2698249-2698280 32 AP014321 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S33-C32, *** SEQUENCING IN PROGRESS *** 24496-24527 10 0.688
NZ_CP053417_2 2.2|2714464|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT 2714464-2714495 32 NZ_CP032696 Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525b, complete sequence 226161-226192 10 0.688
NZ_CP053417_2 2.3|2714525|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT 2714525-2714556 32 NZ_CP054057 Scandinavium goeteborgense strain CCUG 66741 plasmid pSg66741_1, complete sequence 94603-94634 10 0.688
NZ_CP053417_1 1.7|2697826|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT 2697826-2697857 32 NZ_CP024617 Escherichia coli strain SMN152SH1 plasmid pO177A1, complete sequence 464-495 11 0.656
NZ_CP053417_2 2.2|2714464|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT 2714464-2714495 32 NC_015223 Nitrosomonas sp. AL212 plasmid pNAL21201, complete sequence 62493-62524 11 0.656

1. spacer 1.10|2698009|28|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048420 (Sphingomonas insulae strain KCTC 12872 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.786

cgaggatagttgtaccaggtcaggccag	CRISPR spacer
cccggatacatgtaccaggtcaggccga	Protospacer
*  *****  ****************..

2. spacer 1.4|2697643|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053574 (Citrobacter sp. TSA-1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

attatg-gatatattcagcgatatactaacgga	CRISPR spacer
-ctgcgtaatatattcagagatatactaacggg	Protospacer
 .*..* .********** *************.

3. spacer 1.4|2697643|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT matches to HE858210 (Enterobacteria phage RB43, isolate RB43-GVA complete genome) position: , mismatch: 7, identity: 0.781

attatggatatattcagcgatatactaacgga	CRISPR spacer
tttcgcgatatattcaacgatatactcacggc	Protospacer
 **   **********.********* **** 

4. spacer 1.4|2697643|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT matches to MT334653 (Buttiauxella phage vB_ButM_GuL6, complete genome) position: , mismatch: 7, identity: 0.781

attatggatatattcagcgatatactaacgga	CRISPR spacer
tttcgcgatatattcaacgatatactcacggc	Protospacer
 **   **********.********* **** 

5. spacer 1.4|2697643|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT matches to HE981739 (Enterobacteria phage RB43, isolate RB43-GVA orf057::gfp complete genome) position: , mismatch: 7, identity: 0.781

attatggatatattcagcgatatactaacgga	CRISPR spacer
tttcgcgatatattcaacgatatactcacggc	Protospacer
 **   **********.********* **** 

6. spacer 1.4|2697643|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT matches to NC_007023 (Enterobacteria phage RB43, complete genome) position: , mismatch: 7, identity: 0.781

attatggatatattcagcgatatactaacgga	CRISPR spacer
tttcgcgatatattcaacgatatactcacggc	Protospacer
 **   **********.********* **** 

7. spacer 1.13|2698188|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017309 (Leptolyngbya sp. NIES-3755 plasmid plasmid1 DNA, complete genome) position: , mismatch: 7, identity: 0.781

tgcttcggtgtgggattgttcaacatgcgcgg-	CRISPR spacer
tgcttcggtttgggcttgttcaac-caggcgaa	Protospacer
********* **** ********* .. ***. 

8. spacer 1.13|2698188|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 8, identity: 0.75

tgcttcggtgtgggattgttcaacatgcgcgg	CRISPR spacer
ggtttcggtatgggattgctcaacatctgtgc	Protospacer
 *.******.********.******* .*.* 

9. spacer 2.3|2714525|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 8, identity: 0.75

ttaccgcattatatccatttaataatagcgtg	CRISPR spacer
ataagggattatataaatttaataatagcggc	Protospacer
 **  * *******  **************  

10. spacer 1.5|2697704|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 9, identity: 0.719

tgggtatgaatgaccaccgccagcgtcaactg	CRISPR spacer
ggggtttgattgaccaccgccagccgcccgcg	Protospacer
 **** *** **************  *   .*

11. spacer 1.12|2698127|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035508 (Haematobacter massiliensis strain OT1 plasmid pOT1-8, complete sequence) position: , mismatch: 9, identity: 0.719

ccggcgatgcgaagagctgccgtcacaattcc	CRISPR spacer
acggcgatgcgaagagcatccgtcggcagcgc	Protospacer
 ****************  *****.  * . *

12. spacer 1.14|2698249|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020744 (Bacillus mycoides strain Gnyt1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

aagagattaaaaatttatgcgaaggagttggg	CRISPR spacer
cagaaattaaaaatttaggcgaagaaataaaa	Protospacer
 ***.************ ******.*.* ...

13. spacer 1.15|2698310|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT matches to NC_006872 (Clostridium perfringens plasmid pBCNF5603 DNA, complete sequence) position: , mismatch: 9, identity: 0.719

aataaatgtttcaggcggaaataaagccggga	CRISPR spacer
tataaatgtttaaggaggaaataagtatggct	Protospacer
 ********** *** ********.  .**  

14. spacer 1.16|2698371|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT matches to NC_006872 (Clostridium perfringens plasmid pBCNF5603 DNA, complete sequence) position: , mismatch: 9, identity: 0.719

aataaatgtttcaggcggaaataaagccggga	CRISPR spacer
tataaatgtttaaggaggaaataagtatggct	Protospacer
 ********** *** ********.  .**  

15. spacer 2.6|2714708|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT matches to MN693211 (Marine virus AFVG_25M75, complete genome) position: , mismatch: 9, identity: 0.719

tactgctcatatgcttcatacatacccactat	CRISPR spacer
cccctataatatgcttcatacatacatactaa	Protospacer
. *.  * ***************** .**** 

16. spacer 2.6|2714708|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT matches to MN693477 (Marine virus AFVG_25M76, complete genome) position: , mismatch: 9, identity: 0.719

tactgctcatatgcttcatacatacccactat	CRISPR spacer
cccctataatatgcttcatacatacgtactaa	Protospacer
. *.  * ***************** .**** 

17. spacer 2.6|2714708|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT matches to MN693434 (Marine virus AFVG_25M407, complete genome) position: , mismatch: 9, identity: 0.719

tactgctcatatgcttcatacatacccactat	CRISPR spacer
catctataatatgcttcatacatacgtactaa	Protospacer
.*..  * ***************** .**** 

18. spacer 1.9|2697948|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049029 (Fluviibacterium aquatile strain SC52 plasmid pSC52_1, complete sequence) position: , mismatch: 10, identity: 0.688

acgctggccgaaaacggattttcaatccgcat	CRISPR spacer
acgcttgccgaaaccggattttccgtgtctgc	Protospacer
***** ******* ********* .* . ...

19. spacer 1.14|2698249|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT matches to AP014321 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S33-C32, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

aagagattaaaaatttatgcgaaggagttggg	CRISPR spacer
ttaaagttaaaaatttaggcgaagtagtttat	Protospacer
  .*..*********** ****** **** . 

20. spacer 2.2|2714464|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032696 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525b, complete sequence) position: , mismatch: 10, identity: 0.688

cagaaaaagacgcattgcgcgaccagctttgc	CRISPR spacer
gcgcgaaagtcgcgttgcgcgaccagctcaag	Protospacer
  * .**** ***.**************. . 

21. spacer 2.3|2714525|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054057 (Scandinavium goeteborgense strain CCUG 66741 plasmid pSg66741_1, complete sequence) position: , mismatch: 10, identity: 0.688

ttaccgcattatatccatttaataatagcgtg	CRISPR spacer
acagaaaattatattcatttaataaaagcgcc	Protospacer
 .*  . *******.********** ****. 

22. spacer 1.7|2697826|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024617 (Escherichia coli strain SMN152SH1 plasmid pO177A1, complete sequence) position: , mismatch: 11, identity: 0.656

gaattattccggcaattgggacaccattatgg	CRISPR spacer
cctgcgttccgtcaaatgggacaccattaata	Protospacer
    ..***** *** *************  .

23. spacer 2.2|2714464|32|NZ_CP053417|PILER-CR,CRISPRCasFinder,CRT matches to NC_015223 (Nitrosomonas sp. AL212 plasmid pNAL21201, complete sequence) position: , mismatch: 11, identity: 0.656

cagaaaaagacgcattgcgcgaccagctttgc	CRISPR spacer
gctaaaaaaacgaattgcgcgaccaggacaag	Protospacer
   *****.*** *************  . . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 3372722 : 3381311 9 Enterobacteria_phage(66.67%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage