CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040749	Flavobacteriaceae bacterium 10Alg115 chromosome, complete genome	2 crisprs	cas3,WYL,DEDDh,csa3,RT	0	1	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040749_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040749_1

1853243-1853333

Orphan

Consensus_repeat	Method
TTAATTTCTCTTGATTTTTTATCCCGAAACTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040749_1

>merge|NZ_CP040749|1|1853243-1853333|CRISPRCasFinder
TTAATTTCTCTTGATTTTTTATCCCGAAACTTCGGGACTCATAATTTTAGTTTTAGATTTAATTTCTCTTTATTTTTTATCCCGAAACTTC

>NZ_CP040749|1|1|1853243-1853333|CRISPRCasFinder
TTAATTTCTCTTGATTTTTTATCCCGAAACTTC	GGGACTCATAATTTTAGTTTTAGAT
TTAATTTCTCTTTATTTTTTATCCCGAAACTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040749.1\|WP_138949207.1\|1862245_1863439_-\|membrane-dipeptidase	unknown	unknown	gnl\|CDD\|366534
NZ_CP040749.1\|WP_138949201.1\|1853641_1854820_-\|glucose-1-phosphate-thymidylyltransferase	unknown	unknown	gnl\|CDD\|274907
NZ_CP040749.1\|WP_138949206.1\|1861516_1861891_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040749.1\|WP_138949199.1\|1850798_1852274_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP040749.1\|WP_138949193.1\|1845517_1846549_+\|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA	unknown	unknown	gnl\|CDD\|223691
NZ_CP040749.1\|WP_138949194.1\|1846538_1847096_+\|gliding-motility-associated-peptidyl-prolyl-isomerase-GldI	unknown	unknown	gnl\|CDD\|132555
NZ_CP040749.1\|WP_138949196.1\|1848517_1849066_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP040749.1\|WP_138949209.1\|1864130_1864688_-\|YqgE/AlgH-family-protein	unknown	unknown	gnl\|CDD\|376864
NZ_CP040749.1\|WP_138949205.1\|1860928_1861408_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040749.1\|WP_138949202.1\|1854981_1856703_+\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NZ_CP040749.1\|WP_138952457.1\|1856707_1857418_+\|gluconate-2-dehydrogenase-subunit-3-family-protein	unknown	unknown	gnl\|CDD\|379295
NZ_CP040749.1\|WP_138949198.1\|1849584_1850532_+\|DUF342-domain-containing-protein	unknown	unknown	gnl\|CDD\|377177
NZ_CP040749.1\|WP_138949192.1\|1844973_1845393_-\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|184734
NZ_CP040749.1\|WP_138949204.1\|1858894_1860691_+\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|226483
NZ_CP040749.1\|WP_138949197.1\|1849058_1849604_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040749.1\|WP_138949203.1\|1857537_1858785_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225203
NZ_CP040749.1\|WP_138949191.1\|1840939_1844842_+\|choice-of-anchor-D-domain-containing-protein	unknown	unknown	gnl\|CDD\|380152
NZ_CP040749.1\|WP_138949195.1\|1847097_1848192_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223725
NZ_CP040749.1\|WP_138949200.1\|1852251_1852521_+\|membrane-protein-insertion-efficiency-factor-YidD	unknown	unknown	gnl\|CDD\|376620
NZ_CP040749.1\|WP_138949208.1\|1863649_1864045_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040749.1\|WP_138949207.1\|1862245_1863439_-\|membrane-dipeptidase	gnl\|CDD\|366534	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19).	8.51687e-121
NZ_CP040749.1\|WP_138949201.1\|1853641_1854820_-\|glucose-1-phosphate-thymidylyltransferase	gnl\|CDD\|274907	TIGR03991, alt_bact_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. The MJ_1101 protein from Methanococcus jannaschii has been characterized as the GlmU enzyme catalyzing the final two steps of UDP-GlcNAc biosynthesis. Homologs of this enzyme are identified in a number of bacterial organisms and modeled here. A number of these are observed in proximity to the GlmS and GlmM genes, and phylogenetic profiling by PPP identifies the LEPBI_I0518 gene in Leptospira biflexa as a likely Glm-system candidate. Multiple sequence alignments of these bacterial homologs with their archaeal counterparts reveals significant structural differences, necessitating the construction of separate models. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Central intermediary metabolism, Amino sugars].	2.70299e-149
NZ_CP040749.1\|WP_138949199.1\|1850798_1852274_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP040749.1\|WP_138949193.1\|1845517_1846549_+\|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	1.30542e-52
NZ_CP040749.1\|WP_138949194.1\|1846538_1847096_+\|gliding-motility-associated-peptidyl-prolyl-isomerase-GldI	gnl\|CDD\|132555	TIGR03516, hypothetical_protein, peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.	5.00121e-62
NZ_CP040749.1\|WP_138949196.1\|1848517_1849066_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	1.62746e-30
NZ_CP040749.1\|WP_138949195.1\|1847097_1848192_+\|peptidylprolyl-isomerase	gnl\|CDD\|223725	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones].	1.06121e-47
NZ_CP040749.1\|WP_138949209.1\|1864130_1864688_-\|YqgE/AlgH-family-protein	gnl\|CDD\|376864	pfam02622, DUF179, Uncharacterized ACR, COG1678.	9.14393e-53
NZ_CP040749.1\|WP_138949202.1\|1854981_1856703_+\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	6.68118e-63
NZ_CP040749.1\|WP_138952457.1\|1856707_1857418_+\|gluconate-2-dehydrogenase-subunit-3-family-protein	gnl\|CDD\|379295	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3. This family corresponds to subunit 3 of the Gluconate 2-dehydrogenase enzyme that catalyzes the conversion of gluconate to 2-dehydro-D-gluconate EC:1.1.99.3.	4.48246e-38
NZ_CP040749.1\|WP_138949192.1\|1844973_1845393_-\|nucleoside-diphosphate-kinase	gnl\|CDD\|184734	PRK14545, PRK14545, nucleoside diphosphate kinase; Provisional.	7.73271e-84
NZ_CP040749.1\|WP_138949204.1\|1858894_1860691_+\|PDZ-domain-containing-protein	gnl\|CDD\|226483	COG3975, COG3975, Predicted protease with the C-terminal PDZ domain [General function prediction only].	2.56323e-126
NZ_CP040749.1\|WP_138949203.1\|1857537_1858785_+\|hypothetical-protein	gnl\|CDD\|225203	COG2321, COG2321, Predicted metalloprotease [General function prediction only].	5.15079e-05
NZ_CP040749.1\|WP_138949191.1\|1840939_1844842_+\|choice-of-anchor-D-domain-containing-protein	gnl\|CDD\|380152	NF012200, choice_anch_D, choice-of-anchor D domain-containing protein. This HMM describes a repeat domain just over 100 amino acids long and usually found in tandem copies. Members appear to be extracellular proteins that have some C-terminal anchoring domain, such as type IX secrection (T9SS) or PEP-CTERM.	8.87479e-14
NZ_CP040749.1\|WP_138949198.1\|1849584_1850532_+\|DUF342-domain-containing-protein	gnl\|CDD\|377177	pfam03961, FapA, Flagellar Assembly Protein A. Members of this family include FapA (flagellar assembly protein A), found in Vibrio vulnificus. The synthesis of flagella allows bacteria to respond to chemotaxis by facilitating motility. Studies examining the role of FapA show that the loss or delocalization of FapA results in a complete failure of the flagellar biosynthesis and motility in response to glucose mediated chemotaxis. The polar localization of FapA is required for flagellar synthesis, and dephosphorylated EIIAGlc (Glucose-permease IIA component) inhibited the polar localization of FapA through direct interaction.	0.00705663
NZ_CP040749.1\|WP_138949200.1\|1852251_1852521_+\|membrane-protein-insertion-efficiency-factor-YidD	gnl\|CDD\|376620	pfam01809, Haemolytic, Haemolytic domain. This domain has haemolytic activity. It is found in short (73-103 amino acid) proteins and contains three conserved cysteine residues.	6.58175e-39

>NZ_CP040749.1|WP_138949200.1|1852251_1852521_+|membrane-protein-insertion-efficiency-factor-YidD
MVQLFQYKYYQIKKILTYPFILLVRFYQTAISPYTPASCRFTPTCSHYTVEALQKHGLFKGGWLSIKRIFSCHPWGRSGYDPVPDKKEK
>NZ_CP040749.1|WP_138949199.1|1850798_1852274_+|cysteine--tRNA-ligase
MELYKQQKIKIYNSLSNQKEDFVSLNEGYIGMYVCGPTVYSNVHLGNVRTFMSFDLVYRYFKHLGYKIRYVRNITDAGHLENDADVGEDRIAKKARLEEIEPMEVVQRYTVDFHNVLRKFNLLPPNIEPTATGHIIEQIEIIKSIIDNGLAYEVNGSVYFDVLKYNEKEHYGILSGRNIEDAIHNTRVLDGQSEKRNPQDFALWKKAQPEHIMRWPSPWSDGFPGWHLECTAMSTKYLGEQFDIHGGGMDLKFPHHECEIAQAQAHNNVTPVKYWMHGNMLILNGKKMAKSTGNYILPEEIITGNNSILSKPFPATVARFFMLQAHYRSILDFSNDALVASEKGYYRLMNAVNLLDNIQESKSSSIDISNWIQSCYDAMNDDFNSPILIANLFEGVKTINLLVEKKETLSSDDLKTFKATFNTFIFDVLGLENVTSTDSSEKLSNVVELLIDMRNEARINKDWALSDQIRDQLADAGVQLKDGKDGTTFSI
>NZ_CP040749.1|WP_138949198.1|1849584_1850532_+|DUF342-domain-containing-protein
MKTILYKTIGLLLMVSTTIGAQNHRRTYNEDFNTNKDVIIDVNTRNTDVKIETWSKNKVSIEAIIEVEGAEDERAERTLDNWKFSAIGNKSEVEITSKSNGVSSNYFFSNDVNNITIKGNVNDLQNFEYSFPELELDNLIALNNDIMVFPESPRLPVMLDFDFHFEDALPKFDYEKYKTDKSYLKKWQKEMEENLEKNKGNWEKEADKIKENSAVLKVELEKMAEEQKKHAEERKEMLKNQMTQRKELLKQRKNQVIIRGNFNKHEADINKKRNIIIGVLEDREKVKVKRTIIIKAPKDAKFKMNVKYGTLSFLN
>NZ_CP040749.1|WP_138949197.1|1849058_1849604_+|hypothetical-protein
MLKDIKEIIKENEGEKLEMLSNHRQRFENRLQKQQPKKGKNYLFLKIAASILILISAGYFLIGNNDLQPDVIDEKIDLAAISPELKQIENNYETAINYELLGIEVTDNNKEILDSYLEKVSVLSDDYKVLSKKLITDDINENIVNALINNLQLRLQLLLELKDKLKEIKSNKTIQNEDNTI
>NZ_CP040749.1|WP_138949196.1|1848517_1849066_+|sigma-70-family-RNA-polymerase-sigma-factor
MNQTKFLHRDLIKKCKKNNCKAQMKVYDLYCDAMFKTAFNFMKDKALAEDMMQESFIKAFQKLNQFNESVAFGAWLKKIVINQCLDYLKRRKLTIVEINENHLQLSDEDNWKVQSSISIDQVYYAIEQLAENYKITLKLFLLEGYDHQEIAQILNITEVASRSQLFRAKNKLKEMLKQKNYA
>NZ_CP040749.1|WP_138949195.1|1847097_1848192_+|peptidylprolyl-isomerase
MRIAKILFLIVVIVISSCKSNNYTDLEKGLYADIQTDKGAILVQLDYRKVPITVANFVSLAEGTNPYVAKRFRNKHFYEGLLFHRVVKDYIIQGGDPQGTGAGGPGYQFEDEFPIDEKGELILTHSKKGILSMANAGFDTNGSQFFITLKEASNLDGVHTVFGSVVEGVQILDSIAKDDVINKVQIIRIGNESKKFNAPKIFGDYFKKLEKEAEIKVEMAKTAKTNFLKQKEIYEANADSLHSGLKIYFINKGDGEKPNIGNAVKVYYSGYFNSGELFTTNNKEIAELYLKYDPKVEARGGYNPKKMDYSPDAELIHGFKEGLQKMNIGDKVMLFIPSHLAYGTQGRGPIPPDTDLIFELEIVE
>NZ_CP040749.1|WP_138949194.1|1846538_1847096_+|gliding-motility-associated-peptidyl-prolyl-isomerase-GldI
MNTKIKNISTIGFSISLLALIISCTTPQPRKPVVQKTSSFLEESIERNKIINKVEEEALIALMQSDTTKEYITSEKGFWYYYNIKNAEINELPKTGDEVIFTYEIKDVNNKTIYTKEELGEKNYLVDKQELITGLQDGIKLMKEGEIVTFLFPSHKAYGYSGYQKINSNQPLQYTVTLTKVLKNK
>NZ_CP040749.1|WP_138949193.1|1845517_1846549_+|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA
MNTKDIQEVKELLSTPKKIVIVSHRNPDGDAYGSSLALYHYLLRGNHKVKVVSPNDCPDFLKWLPNQDKIIVFDENVEEGTKLLEDAEIVFTLDFNALHRVGHQMEHVLQRISPIYIMIDHHEQPDDYAKYMYSDASIASTCEMIYHFLDKVHELDSIDKDIASCIYTGILTDTGSFKYQATSSTTHRIIANLMDVGIDHTKIHNRLYDTNSYSRLQLLGTALSNLKVMHEYRTAFITISQQELNSMNFKKGDTEGFVNYGLSVAGIVFAVIFIEDQKQGIIKMSLRSKGKFSVNEFARNHFNGGGHLNAAGGRSEIPLQDTVKHFMELLPDYKNELENSYEY
>NZ_CP040749.1|WP_138949192.1|1844973_1845393_-|nucleoside-diphosphate-kinase
MTTNRTFTMLKPDSIEKGNIGAILEKINAAGFRIVAMKLTQMTENDAKAFYAVHNERPFFGELVEYMTRGPIVAAILEKSNAVDDFRALIGATNPEDAAEGTIRKLFAASISENAVHGSDSDENAAIEGAFHFSGREMF
>NZ_CP040749.1|WP_138949191.1|1840939_1844842_+|choice-of-anchor-D-domain-containing-protein
MMKKLLFLMALFAVFFLQAQNYTVSGNGTTIPTDGTNIPDASDDTSFGSVNIGSTAVVHTFTITNNNLTSLFISDNGLTGSTNDFSRSSGGSPGVSFVILGLQSETFEVTFDPISPTGIKAATLNLVATYFGLGGTSNISINFAGTALPPALSPSIDVSGLGVSIVNGDVMPSSIDDTDFGNVTVGGSETHTFTITNTGTAPLNLTGSPLVITPGGAGAFVVTNFPTTPIPAGSSSTFDIEFSPPVTPSTEFYGTSVIIQSDDPNGVFYYNIEGYGVAVSPEIEVSGLGNPIGNPDFSPSTIDDTKYGNVALFTGITHTFTITNRGTAPLNLNGAPLVNVGGTGDFLVTNFPTTPIPVLGSTTFDVTFTPSTSGYQSAIVNIDSDDVTDLNFVFLIEGTGVIPVPEMDITGLGNPINNGDLITSISNDTDFGSVDAFTGSVTHIFTIENTGTLDLNLTDPSPYITISGIDAVDFTLTAVPVSPIAASGNTTFSITFDPTGVALTTRNATVSIANDDADENPYTFAISGTAIDVNAASPFLITQYYEGTLPEDRWIEVKNISTIDFPAGSYYLCLYKDSNATKAGNIESLPPQEFVPIEAMVSGQVRLYSRSGAVLPTNPNLGITPEPATEVCSFNGNDVILISESASFDCYNDRLDIMGIVVDGGTPPNWGKDKSFIKGCGTSLTPSIDFAATTSINGTLVNDYLELTLAEVNNANSLSNIALGTQNSGATTWTTSWDNGVPDKTRTAVISGIYTADKGSIAACDLTITGYLNMDGNTTNYVEANRSFTNTGTVIIGDQESLYTVNNLDINNPGSSDVAISGSITKIEYTTSLNDVQDYTYWSSPVRNQNISAVFPAVSYDQNRIYYWDQAADNLIPNGGDQLTGEWINAAGETMKVGQGYISQGPISGTYPGAASVQFTGVPNSGDINSSTENVVLVWQDDGNFLNDMNLIGNPYPSAIDADAFILESNNFTALNGTIWFWSHKTPNNLNVTGEQYTNDDYAVYNLTGTVGPGVGSPSDSGAPAPEGYIASGQGFVVMADNSPTKTTFTDAMRVREFNTQFYRGTDNKKASVGEKERVWLNAKSSKGGAESQILIAFLENATDGKDKGYDGIKISEGWVNLYSKIDTLNYGIQALGSFNLEKKVPLAFDTYIEDLDVTYSISIDRFEGASLTENAIYLVDNELNVTHDLKQGAYDFSAAIGSYEDRFTLQFTKATLGVDDFDLNNDFVVINEDDALLVKSKTIVKELKMYDVTGRLLVNMLPNESEFRVNTQNIRKGTVLILNTTFDNGTEISKKAIKY
>NZ_CP040749.1|WP_138949201.1|1853641_1854820_-|glucose-1-phosphate-thymidylyltransferase
MNYILFDGNVRNNLLPFTYTRPVADIRIGILTIREKWEKYLGLTTTTLTEEYLEEKYPMVEMETNVMLNASFLPTEQLVEMVQTLHENQAIYYNDEIVAFFTTETQEEVDFEAYEAIIYDEELLQVKCVSDIFSLNEKAIQSDFNLVTSGRKSEPIPDTVNCINKENIFLEEGVEINFVTLNASSGPIYIGKDASIWEGSTVRGPLALCNNAVIKMGTKVYGATTLGPFSKVGGELSNVVIFGYSSKGHDGYLGNSVIGEWCNLGADTNNSNLKNNYAHVKLWDYETDRFESTGLQFCGLMMGDHSKCGINTMFNTGTVVGVSANVYGSNFPRNFIPSFSWGGASGFTEYRMNRVNDVAKMVMLRKHVVYTEQDQRILQSVFELSKKYRNYN
>NZ_CP040749.1|WP_138949202.1|1854981_1856703_+|GMC-family-oxidoreductase
MQIKKSPKEFDVIIVGSGAGGGMATKILSEAGLNIAVVEAGPHFDPADAEQKNQLKWPYESPRRGAGSTRAFGEFDAAYGGWNIEGEPYTKKNGTEFEWFRSRMLGGRTNHWGRISLRFGPLDFKRRSHDGLGDDWPISYEDVKPYYDKVDKLIGVFGSKEGIANEPDGFFLPAPKPRLHEMYYKKGAEKMGIPVIPSRLSILTKKINEDRGICFYCNQCSRSCSVYADFSSGSCLIFPAQKSGGQITLFTDAMVREVVTNDSGKATGVIYIDKKDRKEYQLNAKIVVLAASACSTARILLNSKSKTHQNGLGNSSGMVGKYLHDSTGADRVGFVPELMNRKIYNEDGVGGMHVYSPWWGNDKKLDFPRGYHVEVWGGLGMPSYGFGFNANNLNEYIGGEIGGYGNALRDDVKRFYGSIVGMAGRGECIAREDNYCEIDPDMVDEWGIPVLRFNYTWSQHEKLQAKHMVETFDEIIDGMGGKVISGERPGADRDYGLLKPGQIIHEVGTTRMGNDPKKSVTNKYMQLHDVDNVFIVDGGPFVSQADKNPTWTILALSWRTCDYIVDQLNKQNI
>NZ_CP040749.1|WP_138952457.1|1856707_1857418_+|gluconate-2-dehydrogenase-subunit-3-family-protein
MNRRDTIKSLLLGSVAVGLTVQGCAPKADSATTVLPEAENTPFYGRTPEEKARDKRLHEEVFFNEHELETIAVICDIILPKNDDFGSATDAKVPEFIEFIMKDMPYQQVPIRGGIMWLDNYSNKNNGKEFKRCSTEEQLVICDLIAYPKKTKPEHKQGEKFFTSMRNLTLTGYYTTEMGIKDLGYKGNTPNVWDGVPEDVLKAHGFEYDAEWLAKCVDQSKRGELAKWDADGNLIS
>NZ_CP040749.1|WP_138949203.1|1857537_1858785_+|hypothetical-protein
MRKTKSVLLYLIAFFLIGFISSCNNDALDVQEEAQIVPTLKGTVLKSATDRMGKFNYFRAKVDAGEDISRELYDYAMDMEIPNVINTPDYEFMRNQILGTILNPDDYNCNNSTIPLNDYVNNSISQWTDLDYIYYVFYSYHPQADAIYFKEPGYKKYKYGVNGEFTNQLNRTFKDLKRFWNINSSDIYMVPLSGSTYLNFDRLVEIEALYYPSQSDEENEFYAQFVQDLFGTETYWNYNHPLFSFNAFALSTTNSFIQDRIVMGDGILMGYAAIGLDDVAPQAILAHEFGHHIQFENGYFIDVAEEDQPEATRRTELMADAFAAYYLTHKRGATMNWKRVEQFLEVFYNIGDCGFDNPGHHGTYEQRLAAAKWGRDLASNSWPKGKILTSEVFYQLFEATLDDIVNCDNCLTEME
>NZ_CP040749.1|WP_138949204.1|1858894_1860691_+|PDZ-domain-containing-protein
MKNRILIVLLTVFLSFTGFSQTSNEYSISFDKAEQHEAQITAVFSNLENKVLQLRMSRTSPGRYAVHEFAKNVYNVKAVDSKGNTLSVTRSDPHQWNIGSHDGTVKVTYTLFGNRGDGTYSQIDETHAHLNIPATFMYALDYEHRPIKVKFDVRKDLKWKVATQLKNLDNNTFYAPNLDYFMDSPTEISNHSVRSFIVKNGEKDLKINFALHHNGTEAEFDTYFEKVKKVVLEQQKVFGELPDYDFGEYTFLACYIPNASGDGMEHRNSTIVTSTRGLAEGGMERNIGTVSHEFFHCWNVERIRPQTLEPFDYTEANMSGELWFAEGFTSYYTNLILCRAGLITKKKYVEGLSGGLNYVWNSPARKYFTPIEMSYQAPFVDAARSVDPVNRENTFISYYTYGSVLGLALDLSLRDLDGDKNLDDFMKLLWKTYGRNEIPYTVRDLQNVLTTYAGATFATDFFSNYIFDSKMPAYKTLLASVGVDFNQSNQNELDLGVHIGNFKISSNPIEGGPAYNAGLALGDELISLDDMVINAETKDATYFGQFQPNQTVKLIYNRFGKQRETQFTFKANNDYSTKLQEKVSKKVKENREQWLRTN
>NZ_CP040749.1|WP_138949205.1|1860928_1861408_-|hypothetical-protein
MDLGTTIIGGVSVAICAMPFVLTNRSKKKKVKQLLISLKNIAKEHNSEITQHDIFKYYAIGIDASKNSVSFILKTEEEEQSYFINLSTIKKCEIVKVGSSGAHSDKDIDKLDLKLSPVDKNKPDIMLEFYNAEVSYQLSDELQSIEKWNKTINNLLHSK
>NZ_CP040749.1|WP_138949206.1|1861516_1861891_-|hypothetical-protein
MKRWNQILSVVLLISVYCFGIYVPAKTSLSSDTPVIEQKSEQKEFSTTLSNVLYPHTQQFENLFSEFTEFTLPIFKLGNEGFWAIFRSNEILLNAKFKQYKSHLKTQLIRSRKTDLIFPFHNFW
>NZ_CP040749.1|WP_138949207.1|1862245_1863439_-|membrane-dipeptidase
MRYLVVLFFIFVSCKQSPENKRGPKTLAEIHNQAIFVDTHNDILLHTMEKGFIIDDDLTGKTHSDLNRMKQGGLDVQFFSVWSDGNQANPYQYANAQMDSLDAVIIRNPTKIVKVATTEELLKVVQQDKIAALIGLEGGHQFENDIHKLDTLFNRGVRYITLTWNNSTSWATSASDESKKDGTLNSEGEKGLTELGKQIVHKMNTLGIMVDISHVGEQTFWDVIATTTKPIIASHSSVYTICPHPRNLKDDQIKAIAKNGGVIQINFNSGFIDATVAKKEEKFLVKHKTEIDSLKQLGINPYVAEESMYSKYHLETEELKAPFHLVIDHIEYIIKLVGVDYVGIGSDFDGIVLPPKQLDDVTTYPLITKALIERGYNEKDIYKILGGNILRVLKANE
>NZ_CP040749.1|WP_138949208.1|1863649_1864045_-|hypothetical-protein
MKIEFARMIIIMFGFFIIVTGFIMLFNPQKARMTLSKFASTNFINYTEITLRLVVGVAFILYSDFCKFPEAFKVLGWFMLITALILYCVPRKLHHKFSTGSAHIIKPFYFRLISPFAFLFGGLIIYSVNWI
>NZ_CP040749.1|WP_138949209.1|1864130_1864688_-|YqgE/AlgH-family-protein
MGQTELTKGKLLIAEPSILNDTSFNRSVILLSEHNDQGSIGFIINKPSQYVLGDIIPEIDSNLTIYKGGPVSEENLYFVHRVPHLIPDSIEITDGIFWGGDFEVVQELLEKDELEKEDIRFFLGYSGWSKDQLQDELETTSWIVIENQYQNIFGISDQSFWKDQLMKFGGEYKLWANAPENPSLN

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Crispr_ID: NZ_CP040749_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040749_2

4414950-4415051

Orphan

Consensus_repeat	Method
TCCTAAGTCAAGCGTGTCTACCAATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040749_2

>merge|NZ_CP040749|2|4414950-4415051|CRISPRCasFinder
TCCTAAGTCAAGCGTGTCTACCAATTTCACCACACCCGCATTTTAACAATATTTTAAGAACTTTTATTAGGTTAGCTCCTAAGTCTAGCGTGTCTACCAATT

>NZ_CP040749|2|2|4414950-4415051|CRISPRCasFinder
TCCTAAGTCAAGCGTGTCTACCAATT	TCACCACACCCGCATTTTAACAATATTTTAAGAACTTTTATTAGGTTAGC
TCCTAAGTCTAGCGTGTCTACCAATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040749.1\|WP_138951325.1\|4399704_4400931_+\|family-43-glycosylhydrolase	unknown	unknown	gnl\|CDD\|350106
NZ_CP040749.1\|WP_138952616.1\|4413458_4414562_-\|TraM-recognition-domain-containing-protein	unknown	unknown	gnl\|CDD\|226036
NZ_CP040749.1\|WP_138951348.1\|4418190_4418736_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP040749.1\|WP_138951344.1\|4416713_4416914_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040749.1\|WP_138951329.1\|4403158_4404856_+\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293755
NZ_CP040749.1\|WP_138951356.1\|4422443_4423454_-\|4-hydroxyproline-epimerase	unknown	unknown	gnl\|CDD\|184428
NZ_CP040749.1\|WP_138949166.1\|4418878_4420072_+\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NZ_CP040749.1\|WP_138951333.1\|4406231_4407224_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|153418
NZ_CP040749.1\|WP_138951342.1\|4415198_4416590_+\|dipeptidase	unknown	unknown	gnl\|CDD\|349929
NZ_CP040749.1\|WP_138951331.1\|4404936_4405560_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227721
NZ_CP040749.1\|WP_138951350.1\|4420153_4420444_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040749.1\|WP_138951339.1\|4409293_4410313_+\|UDP-glucose--hexose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|236963
NZ_CP040749.1\|WP_138951354.1\|4421172_4422429_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|234819
NZ_CP040749.1\|WP_138952618.1\|4423446_4425180_-\|DUF885-family-protein	unknown	unknown	gnl\|CDD\|377577
NZ_CP040749.1\|WP_138951337.1\|4408134_4409283_+\|galactokinase	unknown	unknown	gnl\|CDD\|223231
NZ_CP040749.1\|WP_138951346.1\|4417080_4418184_+\|DUF4407-domain-containing-protein	unknown	unknown	gnl\|CDD\|379583
NZ_CP040749.1\|WP_138951335.1\|4407233_4408118_+\|aldose-1-epimerase	unknown	unknown	gnl\|CDD\|185695
NZ_CP040749.1\|WP_138951340.1\|4412059_4413079_+\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|187558
NZ_CP040749.1\|WP_138951327.1\|4401158_4402673_-\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293774
NZ_CP040749.1\|WP_138951352.1\|4420516_4420837_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040749.1\|WP_138951325.1\|4399704_4400931_+\|family-43-glycosylhydrolase	gnl\|CDD\|350106	cd08992, GH117, Glycosyl hydrolase family 117 (GH117). This glycoside hydrolase 117 (GH117) family includes alpha-1,3-L-neoagarooligosaccharide hydrolase (EC 3.2.1.-); alpha-1,3-L-neoagarobiase/neoagarobiose hydrolase (NABH, EC 3.2.1.-). In the agarolytic pathway, in order to metabolize agar, NABH is an essential enzyme because it converts alpha-neoagarobiose (O-3,6-anhydro-alpha-l-galactopyranosyl-(1,3)-d-galactose) into fermentable monosaccharides (d-galactose and 3,6-anhydro-l-galactose). Thus, these enzymes have exo-alpha-1,3-(3,6-anhydro)-l-galactosidase activity, removing terminal non-reducing alpha-1,3-linked 3,6-anhydro-l-galactose residues from their neoagarose substrate. This family includes Zobellia galactanivorans enzymes, Zg4663 and Zg3615 (also known as ZgAhgA and ZgAhgB, respectively) that have been shown to have similar activity on unsubstituted agarose oligosaccharides while Zg3597 has been shown to be inactive, possibly due to differences in dimerization conformation, active-site structure and function. GH117 shares distant sequence similarity with families GH43 and GH32. A common structural feature of all these enzymes is a 5-bladed beta-propeller domain, similar to GH43, that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	0
NZ_CP040749.1\|WP_138952616.1\|4413458_4414562_-\|TraM-recognition-domain-containing-protein	gnl\|CDD\|226036	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion].	9.7176e-19
NZ_CP040749.1\|WP_138951348.1\|4418190_4418736_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	2.49064e-30
NZ_CP040749.1\|WP_138951329.1\|4403158_4404856_+\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293755	cd16031, G6S_like, unchracterized sulfatase homologous to glucosamine (N-acetyl)-6-sulfatase(G6S, GNS). N-acetylglucosamine-6-sulfatase also known as glucosamine (N-acetyl)-6-sulfatase hydrolyzes of the 6-sulfate groups of the N-acetyl-D-glucosamine 6-sulfate units of heparan sulfate and keratan sulfate. Deficiency of N-acetylglucosamine-6-sulfatase results in the disease of Sanfilippo Syndrome type IIId or Mucopolysaccharidosis III (MPS-III), a rare autosomal recessive lysosomal storage disease.	0
NZ_CP040749.1\|WP_138951356.1\|4422443_4423454_-\|4-hydroxyproline-epimerase	gnl\|CDD\|184428	PRK13971, PRK13971, 4-hydroxyproline epimerase.	0
NZ_CP040749.1\|WP_138949166.1\|4418878_4420072_+\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	5.48625e-107
NZ_CP040749.1\|WP_138951333.1\|4406231_4407224_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|153418	cd07377, WHTH_GntR, Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is presumed to result in a conformational change that regulates the DNA-binding affinity of the repressor. The GntR-like proteins bind as dimers, where each monomer recognizes a half-site of 2-fold symmetric DNA sequences.	1.10218e-17
NZ_CP040749.1\|WP_138951342.1\|4415198_4416590_+\|dipeptidase	gnl\|CDD\|349929	cd05680, M20_dipept_like, uncharacterized M20 dipeptidase. Peptidase M20 family, unknown dipeptidase-like subfamily (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine.	0
NZ_CP040749.1\|WP_138951331.1\|4404936_4405560_+\|hypothetical-protein	gnl\|CDD\|227721	COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane].	7.9985e-18
NZ_CP040749.1\|WP_138951339.1\|4409293_4410313_+\|UDP-glucose--hexose-1-phosphate-uridylyltransferase	gnl\|CDD\|236963	PRK11720, PRK11720, UDP-glucose--hexose-1-phosphate uridylyltransferase.	0
NZ_CP040749.1\|WP_138951354.1\|4421172_4422429_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	1.42911e-60
NZ_CP040749.1\|WP_138951337.1\|4408134_4409283_+\|galactokinase	gnl\|CDD\|223231	COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism].	9.49506e-122
NZ_CP040749.1\|WP_138951346.1\|4417080_4418184_+\|DUF4407-domain-containing-protein	gnl\|CDD\|379583	pfam14362, DUF4407, Domain of unknown function (DUF4407). This family of proteins is found in bacteria. Proteins in this family are typically between 366 and 597 amino acids in length. There is a single completely conserved residue R that may be functionally important.	1.31014e-112
NZ_CP040749.1\|WP_138951335.1\|4407233_4408118_+\|aldose-1-epimerase	gnl\|CDD\|185695	cd01081, Aldose_epim, aldose 1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism; they catalyze the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate and the histidine as the active site acid to protonate the C-5 ring oxygen.	1.03291e-43
NZ_CP040749.1\|WP_138951340.1\|4412059_4413079_+\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|187558	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.99118e-162
NZ_CP040749.1\|WP_138951327.1\|4401158_4402673_-\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293774	cd16155, sulfatase_like, uncharacterized sulfatase subfamily. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	6.85088e-139
NZ_CP040749.1\|WP_138952618.1\|4423446_4425180_-\|DUF885-family-protein	gnl\|CDD\|377577	pfam05960, DUF885, Bacterial protein of unknown function (DUF885). This family consists of several hypothetical bacterial proteins several of which are putative membrane proteins.	0

>NZ_CP040749.1|WP_138952616.1|4413458_4414562_-|TraM-recognition-domain-containing-protein
MSDCMPDRTFQKVNSIAPHYLENEESVNQILRVLMENLLEQKESVVTGTSRFFNYAAEGLVGGLIWKLKTNYPKCCTVTHVIAIFQYLDTKSLISFLESNATSKAMANGFIGGKDSEWQTAGVKSTLSNAFKRISTKSIFMALSADEVPLDINGQEDSAVISVVNNPKYETAYSPIIAAIIHTITKQMSIRNKKPPFLLLEEAPTIRLLNIQRIPATFRSYDIATVYVMQDKIQNDIMYGDKASKAIWSNLSYQFFGKVNDPDTAKYYERFFEIVRKETTSINRGHNLNFDTQIATGEKEVAKIRADVFFRLEQGEFVTFADGKDKKVHFQLPKIKKQLPELEKPYTKEDVQENFDRINREVVEIFG
>NZ_CP040749.1|WP_138951340.1|4412059_4413079_+|UDP-glucose-4-epimerase-GalE
MKQKIVVTGGLGFIGSHVVVELQNEGFEVIIIDNLSNSSEDVLEGIKAITGVQPLFEKLDLRDKSLVVDFFSRHHDIMGVIHFAASKAVGESVKLPLLYYENNLNTLIYILQELQKKESSNFIFSSSCTVYGQADTLPITEAAPIKEAESPYGNTKQIGEEIIHDTCKVLENLKAIALRYFNPIGAHDSVIIGELPIGTPQNLVPFITQTGIGLREELSVFGDDYPTEDGTCIRDYIHVVDLAKAHVAALKRLISGDNADNYEVFNIGTGKGSSVLEVISAFEAVSNQKLNYKIVERREGDVIAAYADTTKANNVLGWKPKLDLMDALSSAWKWEQRIK
>NZ_CP040749.1|WP_138951339.1|4409293_4410313_+|UDP-glucose--hexose-1-phosphate-uridylyltransferase
MNTDLQDYSHKRFNILIGEWVLVSPHRAKRPWQGQKEAVSNIVRPTYDPSCYLCSGNTRINGEKNPKYADVFVFTNDFAALQTDSKSFKVEDGLLMAQSEQGICKVICFSPDHSKSLADMETKDIEKVVFAWQKEYNELGENALINYVQIFENKGAVMGCSNPHPHGQIWSQSTLPNEVDKKNQQQLTYYNQNKSSLLGDYMNQELEKKERIIFENAGFVVLIPFWAVWPFETMIIPKTHQQSISDLKADDTFLFAEAVSTITKAYDKLFNTSFPYSSGIHQAPTNGKDNNHWHWHMSFYPPLLRSATVKKFMVGYEMFGSPQRDITAEIAAKMIRDLI
>NZ_CP040749.1|WP_138951337.1|4408134_4409283_+|galactokinase
MNSDLIKKIKTSFQKTFEAEPLMIFSPGRINIIGEHTDYNDGFVFPAAVDKGIVAAVGKSNTDTSIAFAVDKNETLKIDLNNIEPSSEGSWENYVLGVVAEIQNRSKTIGNFNIAFGGDIPGGAGMSSSAALENSVVFGLNELFNLGLSKGDMILISQKAEHNYVGVKCGIMDQYASMFGVKNHALLLDCRTVKSKPFKIDFKNHELILINTNVKHSLSDSAYNDRRSVCESVAEMLKVKALRDATEYDLETIQNKVTAENYQKALYVIQENNRTIKASKAIQDNDLETLGALIYQSHDGLQHQYKVSCDELDFLVEQSKLNGHVLGARMMGGGFGGCTINLIEKTETASFKAFISEAYKNKFNRACSIYSVSLSNGTEIIK
>NZ_CP040749.1|WP_138951335.1|4407233_4408118_+|aldose-1-epimerase
MFRIKHLRDLNQLEIKNSENNLHAKIHLDDGASLQELTLKGHHIIKSLSPLDYADTYASSILFPFANRIKDGKYEFEGNSYQFNINEPDNNNALHGMVYNKRFVFIDEKITGSGASVKLAYHETQSSTGFPFTYSIYLEYVFTQSTLDLNVEIRNTDFKIFPFTLGWHPYFISDDLYNSSFLFDSNLKLKLDNRNITEGIINNENHNNFKMKDQFLDDCFILKTQNVSFLTPSYSLELRTSEKNSFLQLYTPPHKNAIAIEPTTGVSDSFNNEIGLKILKPNEGYKISWTLELK
>NZ_CP040749.1|WP_138951333.1|4406231_4407224_+|GntR-family-transcriptional-regulator
MIIIENKIKIPKYKQIVNSIEELIISGLLKKGDQIPSINKIKTDNNLSRDTVLTALNELKNRGIIQSIVGKGYYVSSENIEVRQKVFLLFDELNSFKEDLYNSFLEYLGNNVQVEIYFHHFNKNSFRRLIEDNAGNYNYYVIMPANMMNTNDFLKMLPSDRVYILDQIHEDLSEYPAIYQNFEKIIFDNLNKAYDLIKKYEKIILVFSEDKQPQGMLKGFREFCESKTFNYEIINDMQDKNIEKSELFIIPDDMSLLKLIKKMKQKGFVLAKDVGVISYNDTLLKEIVEGGITTISTDFDAMGKRLAEMILNKERIQIENPHHLIIRNSL
>NZ_CP040749.1|WP_138951331.1|4404936_4405560_+|hypothetical-protein
MQQLRIIKILLFLFIGIAIYANPATRCDTVMKKEFNILDYGAKSSHTELSTKAIQAAIDACSKNGSGTVIIPKGTYVTGTLFLKSNVTIKMNANTELFGSSSLEDYAEIPVGMEEPHFSKSLFYANGEENIKIIGHPRSEINGKGYMFKHSPERPKLFRIESSKNIEFDNTIIKNSGSWWLSFNRNRWYTLSGICTQGALSLSVLVV
>NZ_CP040749.1|WP_138951329.1|4403158_4404856_+|sulfatase-like-hydrolase/transferase
MPTKFKIKFFLLFSLVLSLTSCSKVETKEKEQNSKPNILYIMADDHTTQAFGIYGSRLASLNPTPTLDKIANEGMIFDNCYVTNSICTPSRATILTGQYSQANGVLDLEGVLPTENQYLPAEIKKLGYQTALIGKYHLSSKPNFDYYNVLTAHGEQGTYFDPVLTETGMNFALENDPKFEGKKYEGHSSDVITDISIDWLKNKRDKSKPFMLMYQFKAPHDNFEYAPRYKDYLNDTYIPEPASLYHNGNNGSVATRGANDSLINVIGSSVSRRNTIRSMGMTMWDKSSIKDSNPEFNPSQKLYDFISDKEYTHETYQEYLKRYLRCVKGVDDNVARMIQFLKDEGLYDNTIIVYTGDQGFMLGEHDYIDKRWMYEESMRMPFFVRYPKLIQPGSRTDAIINNADFAPTLIELAGGNPPEQMQGHSFESILKTAKEPEGWQQSTYYRYWMHMAHKHANPAHFGIRTKRYKLIFFYGKYWVDTKDMKATWNKESWGNSFEMDTPAAWEFYDLKVDPNEMNNAYNELEYAETITDLKKQLIAKRKELNEEDGDKFPHIQKVIDAHWND
>NZ_CP040749.1|WP_138951327.1|4401158_4402673_-|sulfatase-like-hydrolase/transferase
MKICYTLIISFVILTSCKEKVKKVSQKPNIVFILTDDQTYSSIHALGNDEIITPAMDKLAETGTTFTHAYNMGSWSGAVCTASRTMFNSGRFVWRANKFRQNWLKNDSINKTWAKLLQASGYETYMTGKWHIDAPAQKVFNHTKNIRPGMPNDAWDHAKMVAKFDSLSKVPNGNSADIMPKGYNRPLSSNDTSWSAYDKNNGGFWKGGKHWSEVLKDDALEFIDSAKTKDTPFFMYLAFNAPHDPRQAPKEYLEMYPLENLTIPKSFLPENPYRHEIGNGDNLRDEALAPFPRTEYAVKVHKQEYYASITHVDAQIGAILDALKKSGKMDNTYIIFTADHGLAMGRTGFLGKQNLYDHSIRPPLMIVGPTISKNKRIDEDVYLQDVMATALEIGGVPKPTYVEFKSFLDLAEGRSEKSHYKEIYGAYLNLQRMIRKDGYKLLVYPEANKVLLYNMKNDPEEMIDISDLPENRAMVQSLFEDLLALQKEMDDPLDLTKMFQEIKN
>NZ_CP040749.1|WP_138951325.1|4399704_4400931_+|family-43-glycosylhydrolase
MKNRFKLLVIIVGISIVSCQEKVKKEENVKKESNDIEITDKQQDFLGITHKDKLSAASKRALKWDQNLGNEWFIEFSALQPLRGDLAYEEGVVRRDPSAMIKHDGKYYVWYSKSVGPTQGFAGDIEKDKVFPWDRCDIWYATSEDGWTWKEEGLAVPRGEKGSYDDRSVFTVEIMENDGMYYLCYQTVKSPYVVRVKNQIGLAWSNSPDGPWTKSEEPILSPADNGIWKGTEQNRFLVEKKGDFDSHKVHDPCIIPYKEKFYLYYKGEQMGEAITFGGRQIRHGVAIADNPKGPYIKSEYNPISNSGHEICVWPYNDGIASLITTDGPEKNTIQWAPDGINFEIMSVIPGVTAHAIGLNRTADIEKEPTEILRWGLSHIYNSYDYQSIMRFESHRKTTHAAKGESTKK
>NZ_CP040749.1|WP_138951342.1|4415198_4416590_+|dipeptidase
MDNLKPYVQQHKERFINELIEILKIPSISADSAFSQDVIDTSEAVKTALENAGCDHVEICETPGYPIVYGEKIIDKNLPTVLVYGHYDVQPPDPLNLWNSPPFEPVIKKTEIHPEGAIFARGSCDDKGQMYMHVKALEYMTENNNLPCNVKFMIEGEEEVGSESLAWFVKQNQEKLANDVILISDTGMISNTQPSITTGLRGLSYVEVEVTGPNRDLHSGLYGGAVANPINVLTKMIASLHDEDNHITIPGFYDNVEELSAAERAEMAKAPFSLEDYKNAIDIDAVYGEKGYTTNERNSIRPTLDVNGIWGGYTGEGAKTVIASKAFAKISMRLVPHQDWVEITELFKKHFESIAPKGVRVVVKPHHGGQGYVTPIDNIGYKAAAKAYEDSFGVTPIPQRSGGSIPIVALFEQELKSKTILMGFGLDSDAIHSPNEHFGIFNYLKGIETIPLFYKYFTELSSK
>NZ_CP040749.1|WP_138951344.1|4416713_4416914_-|hypothetical-protein
MMTTTTTLEMKTKKSKFNAHIAKQYKRMVSSKNSKSETNAWPLDFNQFVTKNNVCPESWSILSVNH
>NZ_CP040749.1|WP_138951346.1|4417080_4418184_+|DUF4407-domain-containing-protein
MIKNFFWMCSGADPDLLNESPKSEQIKYAGIGGTIFFTAVMAFIASSYALFTVFDNAYIAISFGLVWGLLIFNLDRFIVSTIKKRNNAWQELLQASPRIVLAIIIAIVISKPLEMKIFEKEINQVLLEQKNELTLQNKNQIADQFTPEIERIQSEINTIKIEVDAKEKEVNDLYTTYISEAEGTSGTKKLGKGPVYKEKREKHDALLNELQQLKKESSTSISEKEASIILLRNKQELQITRDQPIINGFDGLMARINALGELAWLPSFFIFLLFVAIETAPVLAKIMATKGAYDLRYEEQEDALKVWVEQQKNQRAALLSTDVALNEKVYYDVAKDEEIYNYKKQKAKDLLKLQSDKFYKKQSEIIG
>NZ_CP040749.1|WP_138951348.1|4418190_4418736_+|GNAT-family-N-acetyltransferase
MLIFDKQFIIMRLLTTYRLELDFATKKDAAFLFELMNDAAYIKNIGDRNIKTIADAENFITDKYIKSYIEHGYGYYIIKLKENLKPIGICGIVNREEMSFFDIGYAVLPEHRNKGFAYEATKALYDFAQKTLQINEIAAITDPDNHESIALIKKLGMKYKKKIQLPNDDIVCHLYTNEKQA
>NZ_CP040749.1|WP_138949166.1|4418878_4420072_+|IS256-family-transposase
MNTELEKQLEALLGKITNKEDFDQVKEQLLKRGIESLLRAEMTAHLGYQKGDSIIANNQRNGFSQKTIKTQNGEQRIQIPRDREASFDPVIVPKHQSISQELEDCIQLLYAKGMSNLDIIDFIHRTYGVNYSTSQVSIITNQLLEDIKLWQNRPLEDVYPIIWIDAIHYKIRQEGKVISKACMIVLGVNTEGQQDILSMHIVETEKASAWMSILDDLRSRGVKDIFFLCSDNLPGLDKAVEAIFPDSIRQICIVHQIRNSLKYVSYKDRKAIMTDIKGIYQADNEQFALEALQIFKQNWEHKYVSAVQSWENNWDNLTAFLNYPKEIRKLIYTTNIIESFNASLRKYTRNKKVFPNDDAALKSIYLAAQSISAKWKKTRFKWGQIYNQLYICFPNRL
>NZ_CP040749.1|WP_138951350.1|4420153_4420444_-|hypothetical-protein
MFKIGEMVVCVDARRRWYKLGNLKENEMYTVVGFNPYDDGLVLKETKSIRSGHNAYARDRFRKVDYDFANNVLSDIKKEHHNHHSEKLSLKSEKTK
>NZ_CP040749.1|WP_138951352.1|4420516_4420837_-|hypothetical-protein
MFKVGEIVVCVNAKRRWYRLGGLQKNEMYTVTGFNPYDGGLILDEIKSPRSGCNAFAANRFRKVDYNFATSLLNEMQAEQAEQQPIPQPEVERELQPQIFALSLLN
>NZ_CP040749.1|WP_138951354.1|4421172_4422429_-|FAD-dependent-oxidoreductase
MKNCIIIGGGIIGLSTAYFLQKEGCRVTVIDQTNMDGLAGGASYVNAGYLTPSHIISLAAPGMISKGIKYMFNSTSPFYMKPRLDIDFLKWTWYFKKSATQYKVERAMPVIKDINLLSRDLYEEIYNSNDLGQFQLEKKGLLMLYKTDKAGEAESKIARVAEGMNLESTVLNAKELKAIEPKVSLEVKGAIHYLCDFHTSPNEIMSSMKIHLEKKGVVFLKNEKVVDFAIKNKNITEIITTKNSYKADEIILATGSWSGLVAKKLHLKLPMEGGKGYRINMEEETGINYPAILMEKKVAVTPMKDFTRFAGTMEMSGLNHTINKKRVDAIANASEQYYEGLKIPQYNIDSAQCGLRPVSPDGLPYIGRTSKFENLTIGAGHAMMGWSLGPATGKLISEIITDRKSSIDLTPFNPDRKF
>NZ_CP040749.1|WP_138951356.1|4422443_4423454_-|4-hydroxyproline-epimerase
MSKYIFKCIDAHTCGNPVRVIAEGGPTLKGSNMSEKRQHFLEEYDWIRKGLMFEPRGHDMMSGSLLFQPHNSENDFAILFIETSGCLPMCGHGTIGTITIAIEEGLVKPKNPGKIRMEAPAGLIEIEYQQTNNKVDWVKLNNVKSYLAAENLKIDCPELGEITFDVAYGGNYYAIVDSQKNFSGVHDFTASKIIQFSQVVRERINQKYSNMFIHPENDAIRDVTHMLWTGNPIDQLSSGRNAVFYGNKAIDRSPCGTGTSARMAQLHAKGKLKIGENFVNESFIGSKFIGRIVKETNLANGIKAIVPSIQGWARIYGYNTINIDEDDPYAFGFQVI
>NZ_CP040749.1|WP_138952618.1|4423446_4425180_-|DUF885-family-protein
MKNHLVILVVSLIILSTCDKKEQTNNSSAQLDKIINEYQDHSGYNKEEFPLGLFNKKYYQKEANYAKELLDLLNEINENNLSDTEKISLTLLKFTLQETIDYNSFEQYLNPLLSDSGFHVSLPYMVRPLNNYDDVKKYLNELNALPVFVDQHLDLLQLALAKGITQPKVIFKGYESTYNTHITDNPVNNFFYSPFKDLPTTLTDSQKDSVIEKAKAAIELIVVPQFKRIKNFFEVEYFPKARTTIGISELPNGKAFYQNRINFYTTSTQYTADDIHRVGLKEVARIKAEMEKIITDLNFRGSFADFFKFLRTDEQFYAKTPAELLMIARDMAKRVDAQLPKFFKTLPRKPYGVAPVPDAIAPKYTAGRYIGTTKNSTEPGYYWVNTYDLKSRTLYTLPSLTVHEAVPGHHLQISLNNELGDSIPKFRKNFYLSAYGEGWGLYCEFLAEEMGMYTSPYEKFGQLTYEMWRACRLVVDTGIHAKGWTREQVVDYMSSNTALSLHEINTETDRYISWPGQALSYKIGELKIRELRLKAEKELGSKFDIREFHEKILEQGTVTLPILETSILDYINSVKNE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040749_1	1.1\|1853276\|25\|NZ_CP040749\|CRISPRCasFinder	1853276-1853300	25	MK804893	Aeromonas phage 2-L372D, complete genome	78128-78152	4	0.84
NZ_CP040749_1	1.1\|1853276\|25\|NZ_CP040749\|CRISPRCasFinder	1853276-1853300	25	NC_048770	Aeromonas phage 2_L372X, complete genome	74075-74099	4	0.84
NZ_CP040749_1	1.1\|1853276\|25\|NZ_CP040749\|CRISPRCasFinder	1853276-1853300	25	AP013517	Uncultured Mediterranean phage uvMED DNA, complete genome, group G21, isolate: uvMED-CGR-U-MedDCM-OCT-S30-C51	15013-15037	5	0.8

1. spacer 1.1|1853276|25|NZ_CP040749|CRISPRCasFinder matches to MK804893 (Aeromonas phage 2-L372D, complete genome) position: , mismatch: 4, identity: 0.84

gggactcataattttagttttagat	CRISPR spacer
gatactcataattttagttttacac	Protospacer
*. ******************* *.

2. spacer 1.1|1853276|25|NZ_CP040749|CRISPRCasFinder matches to NC_048770 (Aeromonas phage 2_L372X, complete genome) position: , mismatch: 4, identity: 0.84

gggactcataattttagttttagat	CRISPR spacer
gatactcataattttagttttacac	Protospacer
*. ******************* *.

3. spacer 1.1|1853276|25|NZ_CP040749|CRISPRCasFinder matches to AP013517 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G21, isolate: uvMED-CGR-U-MedDCM-OCT-S30-C51) position: , mismatch: 5, identity: 0.8

gggactcataattttagttttagat	CRISPR spacer
tttactcataattttagttttagtg	Protospacer
   ********************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

135577 : 144547

Acinetobacter_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138947953.1\|135577_136954_+	MFS transporter	A0A0P0IY73	Acinetobacter_phage	3.0e-69	34.7
WP_138947954.1\|136983_138768_+	MFS transporter	A0A0P0IY73	Acinetobacter_phage	1.4e-55	30.0
WP_138947955.1\|138845_139400_+	thioredoxin fold domain-containing protein	NA	NA	NA	NA
WP_138947956.1\|139492_141370_+	ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	3.1e-53	29.6
WP_117883829.1\|141353_142076_-	3'-5' exonuclease	R9ZX90	Cellulophaga_phage	1.2e-32	39.4
WP_138947957.1\|142177_142522_-	T9SS type A sorting domain-containing protein	NA	NA	NA	NA
WP_117883831.1\|142820_143510_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.5e-40	37.0
WP_138947958.1\|143506_144547_+	sensor histidine kinase	W8CYF6	Bacillus_phage	9.5e-20	25.1

DBSCAN-SWA_2

499384 : 631393

105

Acinetobacter_phage(21.43%)

tRNA,integrase,protease,transposase

attL 501754:501770|attR 557233:557249

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138948203.1\|499384_500014_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_138948204.1\|500105_500432_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA
WP_138948205.1\|500431_500680_+	hypothetical protein	NA	NA	NA	NA
WP_138948206.1\|500744_501455_-	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_138948207.1\|501493_504652_-	glycosyl hydrolase	NA	NA	NA	NA
501754:501770	attL	NA	NA	NA	NA
WP_138948208.1\|504714_505932_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_138948209.1\|506031_506466_+	thioredoxin fold domain-containing protein	NA	NA	NA	NA
WP_138948210.1\|506474_507455_+	FAD:protein FMN transferase	NA	NA	NA	NA
WP_117882006.1\|507454_507667_+	DUF4266 domain-containing protein	NA	NA	NA	NA
WP_138948211.1\|507676_509140_+	DUF3570 domain-containing protein	NA	NA	NA	NA
WP_138948212.1\|509407_509911_+	hypothetical protein	NA	NA	NA	NA
WP_138948213.1\|509999_511928_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA
WP_138952357.1\|511964_513032_-	phosphotransferase	NA	NA	NA	NA
WP_138948214.1\|513077_514097_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_138948215.1\|514214_515057_+	5-dehydro-4-deoxy-D-glucuronate isomerase	NA	NA	NA	NA
WP_138948216.1\|515072_515861_+	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_138948217.1\|515885_517067_+	DUF4861 family protein	NA	NA	NA	NA
WP_138948218.1\|517291_518902_-	family 20 glycosylhydrolase	NA	NA	NA	NA
WP_138948219.1\|518920_520078_-	amidohydrolase family protein	NA	NA	NA	NA
WP_138948220.1\|520081_521563_-	Na+:solute symporter	NA	NA	NA	NA
WP_138948221.1\|521910_522942_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_138948222.1\|522955_524518_-	family 20 glycosylhydrolase	NA	NA	NA	NA
WP_138952359.1\|524608_525373_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA
WP_138948223.1\|525486_526242_-	glycoside hydrolase family 16 protein	NA	NA	NA	NA
WP_138948224.1\|526265_527714_-	DNRLRE domain-containing protein	NA	NA	NA	NA
WP_138948225.1\|527743_529111_-	RagB/SusD family nutrient uptake outer membrane protein	NA	NA	NA	NA
WP_138948226.1\|529123_532222_-	SusC/RagA family TonB-linked outer membrane protein	NA	NA	NA	NA
WP_138948227.1\|532819_534031_+\|integrase	tyrosine-type recombinase/integrase	H7BUI8	unidentified_phage	3.5e-05	22.5
WP_138948228.1\|534103_534349_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_138952361.1\|534994_537925_+	SusC/RagA family TonB-linked outer membrane protein	NA	NA	NA	NA
WP_138952363.1\|537968_539357_+	RagB/SusD family nutrient uptake outer membrane protein	NA	NA	NA	NA
WP_138948229.1\|539426_541793_+	DUF5117 domain-containing protein	NA	NA	NA	NA
WP_138948230.1\|541965_542226_-	hypothetical protein	NA	NA	NA	NA
WP_138948231.1\|542309_543374_-	hypothetical protein	NA	NA	NA	NA
WP_138948232.1\|543374_543854_-	hypothetical protein	NA	NA	NA	NA
WP_138948233.1\|543984_544944_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_138948234.1\|544974_545349_-	hypothetical protein	NA	NA	NA	NA
WP_138948235.1\|545587_548008_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_138948236.1\|548088_548931_+	hypothetical protein	NA	NA	NA	NA
WP_138948237.1\|549155_549434_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_138948238.1\|550122_550779_+	ATPase	NA	NA	NA	NA
WP_138948239.1\|550844_551132_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_138948240.1\|551142_552390_+	HipA domain-containing protein	NA	NA	NA	NA
WP_138948241.1\|552707_553424_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	4.0e-25	40.3
WP_138948242.1\|553776_554874_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	2.6e-23	29.3
WP_138948243.1\|554949_555531_+	hypothetical protein	NA	NA	NA	NA
WP_138948244.1\|555723_556281_+	hypothetical protein	NA	NA	NA	NA
WP_138948245.1\|556319_556604_+	hypothetical protein	NA	NA	NA	NA
WP_138948246.1\|556607_558752_+	AAA family ATPase	NA	NA	NA	NA
557233:557249	attR	NA	NA	NA	NA
WP_138948247.1\|559046_560168_+	three-Cys-motif partner protein TcmP	NA	NA	NA	NA
WP_138948248.1\|560169_560895_+	DUF5131 family protein	A0A2P1A0W3	Gordonia_phage	1.9e-51	41.0
WP_138948249.1\|562877_563336_+	SRPBCC domain-containing protein	NA	NA	NA	NA
WP_138948250.1\|563696_564752_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_013870391.1\|564982_565348_+\|transposase	transposase	NA	NA	NA	NA
WP_138948251.1\|565353_566205_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	5.2e-32	34.1
WP_138948252.1\|566522_567362_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_138948253.1\|567351_567564_+	hypothetical protein	NA	NA	NA	NA
WP_138948254.1\|567784_568882_+\|transposase	transposase	NA	NA	NA	NA
WP_138948255.1\|569027_569675_+	hypothetical protein	NA	NA	NA	NA
WP_138948256.1\|569707_570262_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_138948257.1\|572245_573091_+	DNA alkylation repair protein	NA	NA	NA	NA
WP_138948258.1\|573245_574268_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_138948259.1\|574274_574694_+	hypothetical protein	NA	NA	NA	NA
WP_138948260.1\|574668_575445_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_138948261.1\|575605_576229_+	hypothetical protein	NA	NA	NA	NA
WP_138948262.1\|578164_579157_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	8.5e-18	29.2
WP_138948263.1\|579442_579679_+	hypothetical protein	NA	NA	NA	NA
WP_138948264.1\|579898_583879_-	response regulator	W8CYF6	Bacillus_phage	6.7e-21	28.4
WP_138948265.1\|584175_585858_+	alpha-L-fucosidase	NA	NA	NA	NA
WP_138948266.1\|586318_587839_+	hypothetical protein	NA	NA	NA	NA
WP_138948267.1\|588049_589744_+	alpha-L-fucosidase	NA	NA	NA	NA
WP_138948268.1\|590018_591497_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_138948269.1\|591533_591860_+	hypothetical protein	NA	NA	NA	NA
WP_138948270.1\|591901_593947_+	DUF4982 domain-containing protein	NA	NA	NA	NA
WP_138948271.1\|593978_595211_+	glycosyl hydrolase	NA	NA	NA	NA
WP_138948272.1\|595584_598104_+	hypothetical protein	NA	NA	NA	NA
WP_138948273.1\|598251_598848_-	hypothetical protein	NA	NA	NA	NA
WP_138948274.1\|599307_600522_+	hypothetical protein	NA	NA	NA	NA
WP_138948275.1\|602558_604067_+\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_138948276.1\|604161_605277_+	hypothetical protein	NA	NA	NA	NA
WP_138948277.1\|605290_605869_+	hypothetical protein	NA	NA	NA	NA
WP_138948250.1\|606200_607256_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_138948278.1\|607462_608875_+	hypothetical protein	R9TRQ8	Vibrio_phage	9.6e-31	31.3
WP_138948279.1\|609060_609426_+\|transposase	transposase	NA	NA	NA	NA
WP_138948280.1\|609431_610283_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.1e-29	35.8
WP_138948281.1\|610400_611450_+	helix-turn-helix domain-containing protein	A0A0U4JD08	Gordonia_phage	1.9e-23	26.6
WP_138948282.1\|611460_611976_+	hypothetical protein	NA	NA	NA	NA
WP_138948279.1\|612152_612518_+\|transposase	transposase	NA	NA	NA	NA
WP_138948280.1\|612523_613375_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.1e-29	35.8
WP_138948283.1\|613443_613821_-	hypothetical protein	NA	NA	NA	NA
WP_138948284.1\|614003_614390_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_138948285.1\|616324_617506_+\|transposase	transposase	NA	NA	NA	NA
WP_138948286.1\|617562_617820_+	hypothetical protein	NA	NA	NA	NA
WP_138952365.1\|617890_618166_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_138948287.1\|620058_621051_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	7.2e-09	25.1
WP_138948288.1\|621284_621956_+	hypothetical protein	NA	NA	NA	NA
WP_138948289.1\|622000_622972_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_138948290.1\|623360_624353_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	5.5e-09	25.1
WP_138948291.1\|624411_624732_+	hypothetical protein	NA	NA	NA	NA
WP_138948292.1\|624821_625562_+	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	4.4e-19	28.7
WP_138948293.1\|625585_626512_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_138948294.1\|626539_627352_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_138948295.1\|627430_628012_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_138948296.1\|628013_628223_+	hypothetical protein	NA	NA	NA	NA
WP_138948285.1\|630211_631393_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1379121 : 1395697

Acinetobacter_phage(50.0%)

integrase,transposase

attL 1388374:1388387|attR 1395993:1396006

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138948831.1\|1379121_1379928_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_138948832.1\|1379988_1380177_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_138948833.1\|1380466_1380943_-	hypothetical protein	NA	NA	NA	NA
WP_138948834.1\|1383432_1383945_-	hypothetical protein	NA	NA	NA	NA
WP_138948835.1\|1384165_1384891_-	hypothetical protein	NA	NA	NA	NA
WP_138948275.1\|1384986_1386495_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_138948836.1\|1386711_1387485_-	restriction endonuclease	NA	NA	NA	NA
WP_138948251.1\|1387543_1388395_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	5.2e-32	34.1
1388374:1388387	attL	NA	NA	NA	NA
WP_013870391.1\|1388400_1388766_-\|transposase	transposase	NA	NA	NA	NA
WP_138948837.1\|1390740_1391964_-	PDZ domain-containing protein	NA	NA	NA	NA
WP_042501912.1\|1391966_1392194_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_042501907.1\|1392196_1392721_-	DUF2975 domain-containing protein	NA	NA	NA	NA
WP_138948838.1\|1393172_1394075_-	hypothetical protein	NA	NA	NA	NA
WP_138948839.1\|1394121_1394505_-	hypothetical protein	NA	NA	NA	NA
WP_138948840.1\|1394599_1395697_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	1.1e-21	28.9
1395993:1396006	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2759236 : 2773111

unidentified_phage(33.33%)

integrase,transposase

attL 2753883:2753898|attR 2767107:2767122

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2753883:2753898	attL	NA	NA	NA	NA
WP_138949905.1\|2759236_2760505_+\|integrase	tyrosine-type recombinase/integrase	H7BUI8	unidentified_phage	9.2e-33	34.7
WP_138949906.1\|2761062_2761458_-	hypothetical protein	NA	NA	NA	NA
WP_138949907.1\|2761556_2762681_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	6.9e-32	33.5
WP_093145555.1\|2762758_2763355_+	YhgN family NAAT transporter	NA	NA	NA	NA
WP_138949908.1\|2763526_2764210_+	hypothetical protein	NA	NA	NA	NA
WP_138949909.1\|2764684_2765290_+	DUF4870 domain-containing protein	NA	NA	NA	NA
WP_138949910.1\|2765700_2766324_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_138949911.1\|2768328_2769510_+\|transposase	transposase	NA	NA	NA	NA
2767107:2767122	attR	NA	NA	NA	NA
WP_138949912.1\|2769571_2770264_+	hypothetical protein	NA	NA	NA	NA
WP_138949303.1\|2770601_2771657_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_013870391.1\|2771888_2772254_+\|transposase	transposase	NA	NA	NA	NA
WP_138948251.1\|2772259_2773111_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	5.2e-32	34.1

DBSCAN-SWA_5

2778002 : 2798501

Thermus_phage(28.57%)

integrase,transposase

attL 2775666:2775681|attR 2803003:2803018

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2775666:2775681	attL	NA	NA	NA	NA
WP_138948287.1\|2778002_2778995_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	7.2e-09	25.1
WP_138949918.1\|2779308_2780058_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_138949919.1\|2780351_2780651_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	8.2e-17	45.4
WP_138949920.1\|2780654_2780939_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	8.9e-13	45.3
WP_138952522.1\|2781080_2781644_+	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_138949921.1\|2781716_2782166_+	SRPBCC family protein	NA	NA	NA	NA
WP_138949922.1\|2782421_2782892_+	DinB family protein	NA	NA	NA	NA
WP_138948275.1\|2783114_2784623_+\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_138949923.1\|2784807_2785995_+	hypothetical protein	NA	NA	NA	NA
WP_138949303.1\|2786343_2787399_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_138949924.1\|2787555_2788086_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_138949925.1\|2787995_2788910_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	2.6e-77	52.3
WP_138949166.1\|2788977_2790171_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.2e-34	40.6
WP_138948262.1\|2790403_2791396_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	8.5e-18	29.2
WP_138949926.1\|2791656_2792814_-	MFS transporter	NA	NA	NA	NA
WP_138949927.1\|2792819_2793395_-	HD domain-containing protein	NA	NA	NA	NA
WP_138949928.1\|2793470_2794025_+	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_138948250.1\|2794372_2795428_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_138949929.1\|2795657_2796029_+\|transposase	transposase	NA	NA	NA	NA
WP_138949930.1\|2796223_2796730_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_138949931.1\|2797265_2798501_+\|integrase	tyrosine-type recombinase/integrase	H7BUI8	unidentified_phage	1.6e-34	39.8
2803003:2803018	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3764715 : 3826649

Hokovirus(20.0%)

integrase,protease,transposase

attL 3770274:3770290|attR 3829577:3829593

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_138950710.1\|3764715_3765537_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_138950711.1\|3765630_3766479_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_138950712.1\|3766561_3767062_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_138950714.1\|3767120_3767675_+	DUF1572 family protein	NA	NA	NA	NA
WP_138950715.1\|3767705_3769253_+	phospholipase D family protein	NA	NA	NA	NA
WP_138950717.1\|3769292_3770438_-	hypothetical protein	NA	NA	NA	NA
3770274:3770290	attL	NA	NA	NA	NA
WP_138950718.1\|3771006_3771744_+	hypothetical protein	NA	NA	NA	NA
WP_138950720.1\|3771745_3773023_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA
WP_138950721.1\|3773178_3774948_-	gliding motility lipoprotein GldJ	NA	NA	NA	NA
WP_138950723.1\|3775211_3778685_+	type IX secretion system sortase PorU	NA	NA	NA	NA
WP_138950725.1\|3778722_3779862_+	type IX secretion system outer membrane channel protein PorV	NA	NA	NA	NA
WP_138950726.1\|3780015_3780498_+	cytidine deaminase	NA	NA	NA	NA
WP_138950727.1\|3780540_3780918_+	group III truncated hemoglobin	NA	NA	NA	NA
WP_138950728.1\|3781004_3782069_+	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_138950729.1\|3782195_3783869_-	alkaline phosphatase family protein	NA	NA	NA	NA
WP_117885034.1\|3784024_3784732_+	ABC transporter permease	NA	NA	NA	NA
WP_138950730.1\|3784728_3785505_+	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_138950731.1\|3785547_3786975_-	DUF389 domain-containing protein	NA	NA	NA	NA
WP_138950732.1\|3786996_3788073_-	mannose-1-phosphate guanylyltransferase	A0A1V0SH58	Hokovirus	2.3e-40	32.2
WP_138950733.1\|3788135_3788732_-	sprT domain-containing protein	NA	NA	NA	NA
WP_138952582.1\|3788736_3789423_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_138950734.1\|3789520_3790798_+	amidohydrolase family protein	NA	NA	NA	NA
WP_138950735.1\|3790802_3791573_+	hypothetical protein	NA	NA	NA	NA
WP_138952584.1\|3791609_3793160_-	hypothetical protein	NA	NA	NA	NA
WP_138950736.1\|3793204_3794224_-	glutaminyl-peptide cyclotransferase	NA	NA	NA	NA
WP_117885052.1\|3794347_3794605_+	type B 50S ribosomal protein L31	NA	NA	NA	NA
WP_138950737.1\|3794822_3797240_-	hypothetical protein	NA	NA	NA	NA
WP_138950738.1\|3797479_3797995_-	DUF2892 domain-containing protein	NA	NA	NA	NA
WP_138950739.1\|3798207_3800436_+	penicillin-binding protein	NA	NA	NA	NA
WP_138950740.1\|3800580_3801351_+	hypothetical protein	NA	NA	NA	NA
WP_138950741.1\|3801458_3801728_+	hypothetical protein	NA	NA	NA	NA
WP_138950742.1\|3801769_3803377_+	amidase	NA	NA	NA	NA
WP_138950743.1\|3803381_3803741_+	cupin domain-containing protein	NA	NA	NA	NA
WP_138950744.1\|3803780_3804617_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_138950745.1\|3806663_3808043_-	methylmalonyl-CoA mutase	NA	NA	NA	NA
WP_138950746.1\|3808042_3808363_-	septum formation initiator	NA	NA	NA	NA
WP_138950747.1\|3808363_3808972_-	uridine kinase	L7RCC2	Acanthamoeba_polyphaga_moumouvirus	2.6e-33	42.0
WP_138952585.1\|3809029_3809347_-	c-type cytochrome	NA	NA	NA	NA
WP_138950748.1\|3809436_3810564_-	PQQ-dependent sugar dehydrogenase	NA	NA	NA	NA
WP_138950749.1\|3811016_3812282_+\|integrase	tyrosine-type recombinase/integrase	H7BUI8	unidentified_phage	4.1e-33	35.6
WP_138950750.1\|3812404_3812620_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_138950751.1\|3812791_3814039_+	HEPN domain-containing protein	NA	NA	NA	NA
WP_138949906.1\|3814541_3814937_-	hypothetical protein	NA	NA	NA	NA
WP_138949907.1\|3815035_3816160_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	6.9e-32	33.5
WP_138950752.1\|3816243_3817107_+	hypothetical protein	NA	NA	NA	NA
WP_138950753.1\|3817224_3817437_-	hypothetical protein	NA	NA	NA	NA
WP_138950754.1\|3817458_3817890_+	DUF1851 domain-containing protein	NA	NA	NA	NA
WP_138948250.1\|3818227_3819283_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_138950755.1\|3819480_3819681_+	hypothetical protein	NA	NA	NA	NA
WP_138949914.1\|3819774_3820275_+	hypothetical protein	NA	NA	NA	NA
WP_138952522.1\|3820474_3821038_+	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_138949921.1\|3821110_3821560_+	SRPBCC family protein	NA	NA	NA	NA
WP_138949922.1\|3821815_3822286_+	DinB family protein	NA	NA	NA	NA
WP_138950756.1\|3822244_3822451_-	hypothetical protein	NA	NA	NA	NA
WP_138949923.1\|3822546_3823734_+	hypothetical protein	NA	NA	NA	NA
WP_138948250.1\|3824082_3825138_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_138949924.1\|3825294_3825825_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_138950757.1\|3825734_3826649_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	9.4e-80	53.6
3829577:3829593	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040749

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection