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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP035101 Staphylococcus aureus subsp. aureus strain ATCC 12600 chromosome, complete genome 12 crisprs cas3,DEDDh,DinG,csa3,WYL 9 5 7 0
NZ_CP035102 Staphylococcus aureus subsp. aureus strain ATCC 12600 plasmid unnamed, complete sequence 0 crisprs csa3 0 0 1 0

Results visualization

1. NZ_CP035101
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP035101_1 378588-378688 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP035101_2 623492-623584 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP035101_3 686477-686575 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP035101_4 780429-780509 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP035101_5 785827-785912 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP035101_6 828965-829046 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP035101_7 921998-922280 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP035101_8 1055682-1055769 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP035101_9 1140055-1140241 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP035101_10 1794655-1794881 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP035101_11 1951513-1951591 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP035101_12 2145639-2145789 Orphan NA
2 spacers
csa3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP035101_4 4.1|780455|29|NZ_CP035101|CRISPRCasFinder 780455-780483 29 NZ_CP035101.1 2712082-2712110 0 1.0
NZ_CP035101_6 6.1|828989|34|NZ_CP035101|CRISPRCasFinder 828989-829022 34 NZ_CP035101.1 1348383-1348416 0 1.0
NZ_CP035101_6 6.1|828989|34|NZ_CP035101|CRISPRCasFinder 828989-829022 34 NZ_CP035101.1 1436731-1436764 0 1.0
NZ_CP035101_9 9.1|1140074|37|NZ_CP035101|CRT 1140074-1140110 37 NZ_CP035101.1 2269822-2269858 0 1.0
NZ_CP035101_9 9.2|1140130|37|NZ_CP035101|CRT 1140130-1140166 37 NZ_CP035101.1 339992-340028 0 1.0
NZ_CP035101_9 9.2|1140130|37|NZ_CP035101|CRT 1140130-1140166 37 NZ_CP035101.1 785885-785921 0 1.0
NZ_CP035101_9 9.2|1140130|37|NZ_CP035101|CRT 1140130-1140166 37 NZ_CP035101.1 1039393-1039429 0 1.0
NZ_CP035101_9 9.2|1140130|37|NZ_CP035101|CRT 1140130-1140166 37 NZ_CP035101.1 1348342-1348378 0 1.0
NZ_CP035101_9 9.3|1140186|37|NZ_CP035101|CRT 1140186-1140222 37 NZ_CP035101.1 114071-114107 0 1.0
NZ_CP035101_9 9.3|1140186|37|NZ_CP035101|CRT 1140186-1140222 37 NZ_CP035101.1 622530-622566 0 1.0
NZ_CP035101_9 9.3|1140186|37|NZ_CP035101|CRT 1140186-1140222 37 NZ_CP035101.1 1348400-1348436 0 1.0
NZ_CP035101_9 9.3|1140186|37|NZ_CP035101|CRT 1140186-1140222 37 NZ_CP035101.1 738451-738487 0 1.0
NZ_CP035101_9 9.3|1140186|37|NZ_CP035101|CRT 1140186-1140222 37 NZ_CP035101.1 785941-785977 0 1.0
NZ_CP035101_9 9.3|1140186|37|NZ_CP035101|CRT 1140186-1140222 37 NZ_CP035101.1 1436711-1436747 0 1.0
NZ_CP035101_9 9.3|1140186|37|NZ_CP035101|CRT 1140186-1140222 37 NZ_CP035101.1 1952985-1953021 0 1.0
NZ_CP035101_9 9.3|1140186|37|NZ_CP035101|CRT 1140186-1140222 37 NZ_CP035101.1 1953044-1953080 0 1.0
NZ_CP035101_4 4.1|780455|29|NZ_CP035101|CRISPRCasFinder 780455-780483 29 NZ_CP035101.1 340109-340137 1 0.966
NZ_CP035101_4 4.1|780455|29|NZ_CP035101|CRISPRCasFinder 780455-780483 29 NZ_CP035101.1 1794618-1794646 1 0.966
NZ_CP035101_5 5.1|785857|26|NZ_CP035101|CRISPRCasFinder 785857-785882 26 NZ_CP035101.1 2711994-2712019 1 0.962
NZ_CP035101_5 5.1|785857|26|NZ_CP035101|CRISPRCasFinder 785857-785882 26 NZ_CP035101.1 2712050-2712075 1 0.962
NZ_CP035101_5 5.1|785857|26|NZ_CP035101|CRISPRCasFinder 785857-785882 26 NZ_CP035101.1 748849-748874 1 0.962
NZ_CP035101_5 5.1|785857|26|NZ_CP035101|CRISPRCasFinder 785857-785882 26 NZ_CP035101.1 1140225-1140250 1 0.962
NZ_CP035101_7 7.1|922028|26|NZ_CP035101|CRT 922028-922053 26 NZ_CP035101.1 921972-921997 1 0.962
NZ_CP035101_7 7.3|922142|26|NZ_CP035101|CRT 922142-922167 26 NZ_CP035101.1 785913-785938 1 0.962
NZ_CP035101_9 9.1|1140074|37|NZ_CP035101|CRT 1140074-1140110 37 NZ_CP035101.1 1794615-1794651 1 0.973
NZ_CP035101_9 9.2|1140130|37|NZ_CP035101|CRT 1140130-1140166 37 NZ_CP035101.1 1436769-1436805 1 0.973
NZ_CP035101_9 9.2|1140130|37|NZ_CP035101|CRT 1140130-1140166 37 NZ_CP035101.1 1616515-1616551 1 0.973
NZ_CP035101_9 9.2|1140130|37|NZ_CP035101|CRT 1140130-1140166 37 NZ_CP035101.1 2546710-2546746 1 0.973
NZ_CP035101_9 9.3|1140186|37|NZ_CP035101|CRT 1140186-1140222 37 NZ_CP035101.1 1065590-1065626 1 0.973
NZ_CP035101_9 9.3|1140186|37|NZ_CP035101|CRT 1140186-1140222 37 NZ_CP035101.1 2436249-2436285 1 0.973
NZ_CP035101_11 11.1|1951536|33|NZ_CP035101|CRISPRCasFinder 1951536-1951568 33 NZ_CP035101.1 785893-785925 1 0.97
NZ_CP035101_11 11.1|1951536|33|NZ_CP035101|CRISPRCasFinder 1951536-1951568 33 NZ_CP035101.1 1616523-1616555 1 0.97
NZ_CP035101_11 11.1|1951536|33|NZ_CP035101|CRISPRCasFinder 1951536-1951568 33 NZ_CP035101.1 2546718-2546750 1 0.97
NZ_CP035101_11 11.1|1951536|33|NZ_CP035101|CRISPRCasFinder 1951536-1951568 33 NZ_CP035101.1 1348338-1348370 1 0.97
NZ_CP035101_4 4.1|780455|29|NZ_CP035101|CRISPRCasFinder 780455-780483 29 NZ_CP035101.1 829031-829059 2 0.931
NZ_CP035101_4 4.1|780455|29|NZ_CP035101|CRISPRCasFinder 780455-780483 29 NZ_CP035101.1 941667-941695 2 0.931
NZ_CP035101_4 4.1|780455|29|NZ_CP035101|CRISPRCasFinder 780455-780483 29 NZ_CP035101.1 1616462-1616490 2 0.931
NZ_CP035101_4 4.1|780455|29|NZ_CP035101|CRISPRCasFinder 780455-780483 29 NZ_CP035101.1 1962339-1962367 2 0.931
NZ_CP035101_4 4.1|780455|29|NZ_CP035101|CRISPRCasFinder 780455-780483 29 NZ_CP035101.1 2269827-2269855 2 0.931
NZ_CP035101_4 4.1|780455|29|NZ_CP035101|CRISPRCasFinder 780455-780483 29 NZ_CP035101.1 2461536-2461564 2 0.931
NZ_CP035101_5 5.1|785857|26|NZ_CP035101|CRISPRCasFinder 785857-785882 26 NZ_CP035101.1 748905-748930 2 0.923
NZ_CP035101_5 5.1|785857|26|NZ_CP035101|CRISPRCasFinder 785857-785882 26 NZ_CP035101.1 921972-921997 2 0.923
NZ_CP035101_7 7.1|922028|26|NZ_CP035101|CRT 922028-922053 26 NZ_CP035101.1 2711994-2712019 2 0.923
NZ_CP035101_7 7.1|922028|26|NZ_CP035101|CRT 922028-922053 26 NZ_CP035101.1 2712050-2712075 2 0.923
NZ_CP035101_7 7.1|922028|26|NZ_CP035101|CRT 922028-922053 26 NZ_CP035101.1 748849-748874 2 0.923
NZ_CP035101_7 7.1|922028|26|NZ_CP035101|CRT 922028-922053 26 NZ_CP035101.1 1140225-1140250 2 0.923
NZ_CP035101_7 7.3|922142|26|NZ_CP035101|CRT 922142-922167 26 NZ_CP035101.1 339975-340000 2 0.923
NZ_CP035101_9 9.1|1140074|37|NZ_CP035101|CRT 1140074-1140110 37 NZ_CP035101.1 2461533-2461569 2 0.946
NZ_CP035101_9 9.1|1140074|37|NZ_CP035101|CRT 1140074-1140110 37 NZ_CP035101.1 829026-829062 2 0.946
NZ_CP035101_9 9.1|1140074|37|NZ_CP035101|CRT 1140074-1140110 37 NZ_CP035101.1 1616457-1616493 2 0.946
NZ_CP035101_9 9.1|1140074|37|NZ_CP035101|CRT 1140074-1140110 37 NZ_CP035101.1 1962334-1962370 2 0.946
NZ_CP035101_9 9.1|1140074|37|NZ_CP035101|CRT 1140074-1140110 37 NZ_CP035101.1 2712077-2712113 2 0.946
NZ_CP035101_9 9.2|1140130|37|NZ_CP035101|CRT 1140130-1140166 37 NZ_CP035101.1 1136162-1136198 2 0.946
NZ_CP035101_9 9.2|1140130|37|NZ_CP035101|CRT 1140130-1140166 37 NZ_CP035101.1 1140242-1140278 2 0.946
NZ_CP035101_9 9.2|1140130|37|NZ_CP035101|CRT 1140130-1140166 37 NZ_CP035101.1 2269878-2269914 2 0.946
NZ_CP035101_9 9.2|1140130|37|NZ_CP035101|CRT 1140130-1140166 37 NZ_CP035101.1 2712022-2712058 2 0.946
NZ_CP035101_9 9.3|1140186|37|NZ_CP035101|CRT 1140186-1140222 37 NZ_CP035101.1 1136218-1136254 2 0.946
NZ_CP035101_11 11.1|1951536|33|NZ_CP035101|CRISPRCasFinder 1951536-1951568 33 NZ_CP035101.1 1436777-1436809 2 0.939

1. spacer 4.1|780455|29|NZ_CP035101|CRISPRCasFinder matches to position: 2712082-2712110, mismatch: 0, identity: 1.0

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtttgtagaatttcttttcgaaa	Protospacer
*****************************

2. spacer 6.1|828989|34|NZ_CP035101|CRISPRCasFinder matches to position: 1348383-1348416, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

3. spacer 6.1|828989|34|NZ_CP035101|CRISPRCasFinder matches to position: 1436731-1436764, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

4. spacer 9.1|1140074|37|NZ_CP035101|CRT matches to position: 2269822-2269858, mismatch: 0, identity: 1.0

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcaaaaagaaattctacagacaatgcaagttg	Protospacer
*************************************

5. spacer 9.2|1140130|37|NZ_CP035101|CRT matches to position: 339992-340028, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

6. spacer 9.2|1140130|37|NZ_CP035101|CRT matches to position: 785885-785921, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

7. spacer 9.2|1140130|37|NZ_CP035101|CRT matches to position: 1039393-1039429, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

8. spacer 9.2|1140130|37|NZ_CP035101|CRT matches to position: 1348342-1348378, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

9. spacer 9.3|1140186|37|NZ_CP035101|CRT matches to position: 114071-114107, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

10. spacer 9.3|1140186|37|NZ_CP035101|CRT matches to position: 622530-622566, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

11. spacer 9.3|1140186|37|NZ_CP035101|CRT matches to position: 1348400-1348436, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

12. spacer 9.3|1140186|37|NZ_CP035101|CRT matches to position: 738451-738487, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

13. spacer 9.3|1140186|37|NZ_CP035101|CRT matches to position: 785941-785977, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

14. spacer 9.3|1140186|37|NZ_CP035101|CRT matches to position: 1436711-1436747, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

15. spacer 9.3|1140186|37|NZ_CP035101|CRT matches to position: 1952985-1953021, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

16. spacer 9.3|1140186|37|NZ_CP035101|CRT matches to position: 1953044-1953080, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

17. spacer 4.1|780455|29|NZ_CP035101|CRISPRCasFinder matches to position: 340109-340137, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcttgtagaatttcttttcgaaa	Protospacer
*******.*********************

18. spacer 4.1|780455|29|NZ_CP035101|CRISPRCasFinder matches to position: 1794618-1794646, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaa	Protospacer
********.********************

19. spacer 5.1|785857|26|NZ_CP035101|CRISPRCasFinder matches to position: 2711994-2712019, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
************.*************

20. spacer 5.1|785857|26|NZ_CP035101|CRISPRCasFinder matches to position: 2712050-2712075, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctttgttggggccccg	Protospacer
************ *************

21. spacer 5.1|785857|26|NZ_CP035101|CRISPRCasFinder matches to position: 748849-748874, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgcctgcttctgtgttggggccccg	Protospacer
***** ********************

22. spacer 5.1|785857|26|NZ_CP035101|CRISPRCasFinder matches to position: 1140225-1140250, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
************.*************

23. spacer 7.1|922028|26|NZ_CP035101|CRT matches to position: 921972-921997, mismatch: 1, identity: 0.962

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaggctggtgg	Protospacer
***********************.**

24. spacer 7.3|922142|26|NZ_CP035101|CRT matches to position: 785913-785938, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacacagaagctgacga	Protospacer
**********************.***

25. spacer 9.1|1140074|37|NZ_CP035101|CRT matches to position: 1794615-1794651, mismatch: 1, identity: 0.973

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacagacaatgcaagttg	Protospacer
*******.*****************************

26. spacer 9.2|1140130|37|NZ_CP035101|CRT matches to position: 1436769-1436805, mismatch: 1, identity: 0.973

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agatgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
** **********************************

27. spacer 9.2|1140130|37|NZ_CP035101|CRT matches to position: 1616515-1616551, mismatch: 1, identity: 0.973

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttactataatgtgcaagtt	Protospacer
********************** **************

28. spacer 9.2|1140130|37|NZ_CP035101|CRT matches to position: 2546710-2546746, mismatch: 1, identity: 0.973

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcgagtt	Protospacer
********************************.****

29. spacer 9.3|1140186|37|NZ_CP035101|CRT matches to position: 1065590-1065626, mismatch: 1, identity: 0.973

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgtaagtt	Protospacer
*******************************.*****

30. spacer 9.3|1140186|37|NZ_CP035101|CRT matches to position: 2436249-2436285, mismatch: 1, identity: 0.973

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctagagacaatgcaagtt	Protospacer
********************** **************

31. spacer 11.1|1951536|33|NZ_CP035101|CRISPRCasFinder matches to position: 785893-785925, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

32. spacer 11.1|1951536|33|NZ_CP035101|CRISPRCasFinder matches to position: 1616523-1616555, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattatagtaagctgacttttcgtcagcttctg	Protospacer
****** **************************

33. spacer 11.1|1951536|33|NZ_CP035101|CRISPRCasFinder matches to position: 2546718-2546750, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

34. spacer 11.1|1951536|33|NZ_CP035101|CRISPRCasFinder matches to position: 1348338-1348370, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

35. spacer 4.1|780455|29|NZ_CP035101|CRISPRCasFinder matches to position: 829031-829059, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

36. spacer 4.1|780455|29|NZ_CP035101|CRISPRCasFinder matches to position: 941667-941695, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

37. spacer 4.1|780455|29|NZ_CP035101|CRISPRCasFinder matches to position: 1616462-1616490, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

38. spacer 4.1|780455|29|NZ_CP035101|CRISPRCasFinder matches to position: 1962339-1962367, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaa	Protospacer
********.***********.********

39. spacer 4.1|780455|29|NZ_CP035101|CRISPRCasFinder matches to position: 2269827-2269855, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttctttttgaaa	Protospacer
********.***************.****

40. spacer 4.1|780455|29|NZ_CP035101|CRISPRCasFinder matches to position: 2461536-2461564, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

41. spacer 5.1|785857|26|NZ_CP035101|CRISPRCasFinder matches to position: 748905-748930, mismatch: 2, identity: 0.923

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgcctgcttctatgttggggccccg	Protospacer
***** ******.*************

42. spacer 5.1|785857|26|NZ_CP035101|CRISPRCasFinder matches to position: 921972-921997, mismatch: 2, identity: 0.923

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccaccagcctctgtgttggggccccg	Protospacer
**.*****.*****************

43. spacer 7.1|922028|26|NZ_CP035101|CRT matches to position: 2711994-2712019, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
*************.***.********

44. spacer 7.1|922028|26|NZ_CP035101|CRT matches to position: 2712050-2712075, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacaaagaagctggcgg	Protospacer
************* ***.********

45. spacer 7.1|922028|26|NZ_CP035101|CRT matches to position: 748849-748874, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
*****************.** *****

46. spacer 7.1|922028|26|NZ_CP035101|CRT matches to position: 1140225-1140250, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
*************.***.********

47. spacer 7.3|922142|26|NZ_CP035101|CRT matches to position: 339975-340000, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacaaagaagctgacga	Protospacer
************* ********.***

48. spacer 9.1|1140074|37|NZ_CP035101|CRT matches to position: 2461533-2461569, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaggcaatgcaagttg	Protospacer
*******.****************.************

49. spacer 9.1|1140074|37|NZ_CP035101|CRT matches to position: 829026-829062, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaggcaatgcaagttg	Protospacer
*******.****************.************

50. spacer 9.1|1140074|37|NZ_CP035101|CRT matches to position: 1616457-1616493, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaggcaatgcaagttg	Protospacer
*******.****************.************

51. spacer 9.1|1140074|37|NZ_CP035101|CRT matches to position: 1962334-1962370, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaggaaattctacagacaatgcaagttg	Protospacer
*******.***.*************************

52. spacer 9.1|1140074|37|NZ_CP035101|CRT matches to position: 2712077-2712113, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaaacaatgcaagttg	Protospacer
*******.***************.*************

53. spacer 9.2|1140130|37|NZ_CP035101|CRT matches to position: 1136162-1136198, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcgaaaagtcagcttacaaaaatgtgcaagtt	Protospacer
*****.****************** ************

54. spacer 9.2|1140130|37|NZ_CP035101|CRT matches to position: 1140242-1140278, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

55. spacer 9.2|1140130|37|NZ_CP035101|CRT matches to position: 2269878-2269914, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacagaaagtcagcttacaataatgtgcaagtt	Protospacer
*******..****************************

56. spacer 9.2|1140130|37|NZ_CP035101|CRT matches to position: 2712022-2712058, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

57. spacer 9.3|1140186|37|NZ_CP035101|CRT matches to position: 1136218-1136254, mismatch: 2, identity: 0.946

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggaaccccaatttctacagacaatgcaagtt	Protospacer
********* .**************************

58. spacer 11.1|1951536|33|NZ_CP035101|CRISPRCasFinder matches to position: 1436777-1436809, mismatch: 2, identity: 0.939

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
******.******************* ******

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP035101_7 7.4|922198|53|NZ_CP035101|CRT 922198-922250 53 MG543995 Staphylococcus phage UPMK_1, partial genome 76246-76298 4 0.925
NZ_CP035101_5 5.1|785857|26|NZ_CP035101|CRISPRCasFinder 785857-785882 26 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333735-333760 5 0.808
NZ_CP035101_5 5.1|785857|26|NZ_CP035101|CRISPRCasFinder 785857-785882 26 NZ_CP034332 Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence 3359-3384 5 0.808
NZ_CP035101_5 5.1|785857|26|NZ_CP035101|CRISPRCasFinder 785857-785882 26 NZ_CP022605 Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence 715511-715536 5 0.808
NZ_CP035101_7 7.3|922142|26|NZ_CP035101|CRT 922142-922167 26 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333735-333760 5 0.808
NZ_CP035101_4 4.1|780455|29|NZ_CP035101|CRISPRCasFinder 780455-780483 29 MN693281 Marine virus AFVG_25M371, complete genome 6448-6476 7 0.759
NZ_CP035101_11 11.1|1951536|33|NZ_CP035101|CRISPRCasFinder 1951536-1951568 33 NC_021536 Synechococcus phage S-IOM18 genomic sequence 159745-159777 10 0.697

1. spacer 7.4|922198|53|NZ_CP035101|CRT matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 4, identity: 0.925

ggtgggacgacgaaataaattttgcgaaaatatcatttctgtcccactcccaa	CRISPR spacer
ggtgggacgacgaaataaattttgagaaactatcatttctgtcccactccctt	Protospacer
************************ **** *********************  

2. spacer 5.1|785857|26|NZ_CP035101|CRISPRCasFinder matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
acgccagcttctgtgttgaggcctta	Protospacer
 *****************.****...

3. spacer 5.1|785857|26|NZ_CP035101|CRISPRCasFinder matches to NZ_CP034332 (Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctgtgtctgggcctac	Protospacer
****************. *****.  

4. spacer 5.1|785857|26|NZ_CP035101|CRISPRCasFinder matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctgtgtttggccctga	Protospacer
***************** ** **. .

5. spacer 7.3|922142|26|NZ_CP035101|CRT matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcga	CRISPR spacer
taaggcctcaacacagaagctggcgt	Protospacer
...****.***************** 

6. spacer 4.1|780455|29|NZ_CP035101|CRISPRCasFinder matches to MN693281 (Marine virus AFVG_25M371, complete genome) position: , mismatch: 7, identity: 0.759

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtttgtaggatttcttctaagtg	Protospacer
**************.*******.* .. .

7. spacer 11.1|1951536|33|NZ_CP035101|CRISPRCasFinder matches to NC_021536 (Synechococcus phage S-IOM18 genomic sequence) position: , mismatch: 10, identity: 0.697

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
ttttatcgtaaggtgagttttcgtcaagcacct	Protospacer
. ********** *** *********. . *. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 717540 : 725360 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 737332 : 752063 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 837311 : 884244 74 Staphylococcus_phage(94.44%) capsid,holin,integrase,head,plate,terminase,portal,tail attL 835408:835424|attR 870155:870171
DBSCAN-SWA_4 1040906 : 1049379 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_5 1588084 : 1596396 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_6 1665534 : 1674577 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_7 1807063 : 1881315 75 Staphylococcus_phage(93.22%) protease,tRNA,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP035102
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 8559 : 17470 10 Staphylococcus_phage(57.14%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage