CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040780	Lactobacillus rhamnosus strain 1.0320 chromosome, complete genome	7 crisprs	cas3,csa3,DinG,WYL,DEDDh,cas14j,csn2,cas2,cas1,cas9	1	16	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040780_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040780_1

792172-792491

Orphan

Consensus_repeat	Method
TCACAAGCCGCAGCATCACAGGCTGC	CRISPRCasFinder

5 spacers

DinG

The CRISPR arrays of NZ_CP040780_1

>merge|NZ_CP040780|1|792172-792491|CRISPRCasFinder
CCACAACCTGCAGCACCACAGTCAAATGAGGCCAGTGTTGCATCAACGAACGCCAATGCAGCTAATGATTCTGCCGCTGCTTCTAATGCAGCCGCATCGCAAGCCGCAGCTTCCAGTGCTGCCGCTTCTACAGCAGCAGCTAATGCAGCAGTAGCATCTACAAATGCCACTGCATCACAAGCAGCGGCTTCTGAAGCTACTGCATCTCAGGCGGCTGCATCACAAGCCGCAGCATCACAGGCTGCAGCGTCTCAGGCGGCTGCATCACAAGCTGCCGCTTCACAAGCCGCAGCATCACAGGCTGCCGCATCACAAGCAGC

>NZ_CP040780|1|1|792172-792491|CRISPRCasFinder
CCACAACCTGCAGCACCACAGTCAAA	TGAGGCCAGTGTTGCATCAACGAACGCCAATGCAGCTAATGATTCTGCCGCTGCT
TCTAATGCAGCCGCATCGCAAGCCGC	AGCTTCCAGTGCTGCCGCTTCTACAGCAGCAGCTAATGCAGCAGTAGCATCT
ACAAATGCCACTGCATCACAAGCAGC	GGCTTCTGAAGCTACTGCA
TCTCAGGCGGCTGCATCACAAGCCGC	AGCATCACAGGCTGCAGCG
TCTCAGGCGGCTGCATCACAAGCTGC	CGCTTCACAAGCCGCAGCA
TCACAGGCTGCCGCATCACAAGCAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040780.1\|WP_047676630.1\|801249_803634_-\|ATP-dependent-DNA-helicase	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|224120
NZ_CP040780.1\|WP_005691311.1\|793148_794510_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|181958
NZ_CP040780.1\|WP_005691321.1\|797874_798240_+\|PTS-lactose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|224364
NZ_CP040780.1\|WP_032964116.1\|788643_789309_+\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234784
NZ_CP040780.1\|WP_047676625.1\|798265_799690_+\|6-phospho-beta-galactosidase	unknown	unknown	gnl\|CDD\|184102
NZ_CP040780.1\|WP_047676628.1\|799746_800595_-\|sce7725-family-protein	unknown	unknown	unknown
NZ_CP040780.1\|WP_047676623.1\|795057_796851_+\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273055
NZ_CP040780.1\|WP_049171477.1\|800591_801272_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040780.1\|WP_047676614.1\|784011_784797_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223488
NZ_CP040780.1\|WP_049171484.1\|803840_805130_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270451
NZ_CP040780.1\|WP_005710167.1\|789310_790501_+\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
NZ_CP040780.1\|WP_014571073.1\|785671_785995_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|212133
NZ_CP040780.1\|WP_047676619.1\|790625_791342_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
NZ_CP040780.1\|WP_047676610.1\|782181_783060_+\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223633
NZ_CP040780.1\|WP_005688216.1\|786114_787017_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|283645
NZ_CP040780.1\|WP_049171489.1\|805326_805977_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237855
NZ_CP040780.1\|WP_033573611.1\|796904_797774_+\|PRD-domain-containing-protein	unknown	unknown	gnl\|CDD\|170086
NZ_CP040780.1\|WP_005691299.1\|784789_785506_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223487
NZ_CP040780.1\|WP_047676612.1\|783064_784015_+\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119323
NZ_CP040780.1\|WP_047676616.1\|787009_788326_-\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224372

Protein	Function_ID	Function_description	E-value
NZ_CP040780.1\|WP_047676630.1\|801249_803634_-\|ATP-dependent-DNA-helicase	gnl\|CDD\|224120	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair].	7.4709e-72
NZ_CP040780.1\|WP_005691311.1\|793148_794510_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|181958	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.	3.13755e-122
NZ_CP040780.1\|WP_005691321.1\|797874_798240_+\|PTS-lactose-transporter-subunit-IIA	gnl\|CDD\|224364	COG1447, CelC, Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism].	2.18437e-35
NZ_CP040780.1\|WP_032964116.1\|788643_789309_+\|deoxyribose-phosphate-aldolase	gnl\|CDD\|234784	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional.	1.57468e-120
NZ_CP040780.1\|WP_047676625.1\|798265_799690_+\|6-phospho-beta-galactosidase	gnl\|CDD\|184102	PRK13511, PRK13511, 6-phospho-beta-galactosidase; Provisional.	0
NZ_CP040780.1\|WP_047676623.1\|795057_796851_+\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273055	TIGR00394, lac_pts_IIC, phosphotransferase system, lactose specific, IIC component. This family of proteins models the IIC domain of the phosphotransferase system (PTS) for lactose. The IIC domain catalyzes the transfer of a phosphoryl group from the IIB domain to lactose. When the IIC component and IIB components are in the same polypeptide chain they are designated IIBC. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS].	7.9274e-147
NZ_CP040780.1\|WP_047676614.1\|784011_784797_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223488	COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	1.02811e-111
NZ_CP040780.1\|WP_049171484.1\|803840_805130_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270451	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold. This group includes the periplasmic component of an ABC transport system specific for sn-glycerol-3-phosphate (G3P) and closely related proteins from archaea and bacteria. Under phophate starvation conditions, Escherichia coli can utilize G3P as phosphate source when exclusively imported by an ATP-binding cassette (ABC) transporter composed of the periplasmic binding protein, UgpB, the transmembrane subunits, UgpA and UgpE, and a homodimer of the nucleotide binding subunit, UgpC. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.84733e-80
NZ_CP040780.1\|WP_005710167.1\|789310_790501_+\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
NZ_CP040780.1\|WP_014571073.1\|785671_785995_+\|hypothetical-protein	gnl\|CDD\|212133	cd11523, NTP-PPase, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain superfamily. This superfamily contains enzymes that hydrolyze the alpha-beta phosphodiester bond of all canonical NTPs into monophosphate derivatives and pyrophosphate (PPi). Divalent ions, such as Mg2+ ion(s), are essential to activate a proposed water nucleophile and stabilize the charged intermediates to facilitate catalysis. These enzymes share a conserved divalent ion-binding motif EXX[E/D] in their active sites. They also share a highly conserved four-helix bundle, where one face forms the active site, while the other participates in oligomer assembly. The four-helix bundle consists of two central antiparallel alpha-helices that can be contained within a single protomer or form upon dimerization. The superfamily members include dimeric dUTP pyrophosphatases (dUTPases; EC 3.6.1.23), the nonspecific NTP-PPase MazG proteins, HisE-encoded phosphoribosyl ATP pyrophosphohydolase (PRA-PH), fungal histidine biosynthesis trifunctional proteins, and several uncharacterized protein families.	2.66124e-12
NZ_CP040780.1\|WP_047676619.1\|790625_791342_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	7.1691e-145
NZ_CP040780.1\|WP_047676610.1\|782181_783060_+\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|223633	COG0559, LivH, Branched-chain amino acid ABC-type transport system, permease components [Amino acid transport and metabolism].	1.3115e-84
NZ_CP040780.1\|WP_005688216.1\|786114_787017_-\|alpha/beta-hydrolase	gnl\|CDD\|283645	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915). This family consists of several bacterial proteins of unknown function. Members of this family have an alpha/beta hydrolase fold.	1.4272e-66
NZ_CP040780.1\|WP_049171489.1\|805326_805977_+\|hypothetical-protein	gnl\|CDD\|237855	PRK14900, valS, valyl-tRNA synthetase; Provisional.	0.000424705
NZ_CP040780.1\|WP_033573611.1\|796904_797774_+\|PRD-domain-containing-protein	gnl\|CDD\|170086	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional.	1.10129e-27
NZ_CP040780.1\|WP_005691299.1\|784789_785506_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	3.30146e-127
NZ_CP040780.1\|WP_047676612.1\|783064_784015_+\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|119323	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.	2.28231e-72
NZ_CP040780.1\|WP_047676616.1\|787009_788326_-\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|224372	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism].	2.97397e-64

>NZ_CP040780.1|WP_047676619.1|790625_791342_+|purine-nucleoside-phosphorylase
MSTHIDAPKGAIADVVLLPGDPLRAQYIAEHFLEKVVRYNTVRNAFGYTGTFEGRRVSVQATGMGIPSISIYVNELIQDYGVKTLIRVGTAGGMGSDVKVRDVILVQGSSTDSSIILNTFGAGMYFAPIADFQLLREAANLADAGALRYHVGNVLGEDRFYNDEMDRQKLIDYGVLATEMETPALYLLAAKFHAQALSILTVSNHLITGEETTAQERQTSFNDMIGLALGVAKKIPVR
>NZ_CP040780.1|WP_005710167.1|789310_790501_+|phosphopentomutase
MAFDRIITIVLDSIGIGEAPDAAKYHDTGADTLGHIGDYFAGKLSLPNLQAIGLGNIDRPTPIAGVKPLGSPSGYFGKMAEISAGKDSMDGHWEMMGLPVTEPLGYFPNGFPEDLIKQIEEFSGRHVILNKPYSGTEAIKDYGEEQLKTGDLIVYTSGDSVLQIAAQTDVIPLEELYRICRYVRSITIDAPYRIGRVIARPYVGTDPTTFTRTSDRHDYTLKPDKPTDLDRLQGAGVPTYGIGKINDIFSGQGLDDGVHTVSNVDGMNQTIAAVKSDRKGFIFTNLVDFDAMYGHRRNAQGDGDALMTFDHQLGDLLTVLRREDLLMITADHGNDPTFRGTDHTREFVPLLAYSKALAGNGDLGIRSPFSDLGATILDNFGVTGNQVGQSFLSLLR
>NZ_CP040780.1|WP_032964116.1|788643_789309_+|deoxyribose-phosphate-aldolase
MDKPLAKYIDHTLLKPDATQAQIDVILDQAKQYDFASVCINPYWVVRAAASLRDTDVNVCTVIGFPLGANTTQTKVFEAGQAVDEGAKEVDMVLNIGELKAGHNDHVRADIQAVADITHAKGGILKVIIEAVLLTDDEKVTACKLAAAAGADFVKTSTGFAAGGATVHDVKLMRQTVGDQLGVKAAGGIHTYAEAKALIEAGADRLGASAGVQILKEAGEA
>NZ_CP040780.1|WP_047676616.1|787009_788326_-|PTS-sugar-transporter-subunit-IIC
MSNLTKRLLPMLVANSVRLRQTRTYRALQQTFAVIFPFVVIGAWAQMLELSVFSRNGFFAVIYNLNKVIPFYTQIRTLLIAIENVTINLMAVMTAFFVAKYIARSYKKDDSLAAITSVGAFLILNLETRRNAQSVFQMNNLGYRGLFIAIIFGLLIGWLFRFTRADLEEPSHRYTIAGLVSRGLRGTWMMVLILISCVVINYGLGFVSTEGFVGLFYVVFQFPAAHLTHVSLRLALVTTINALMWWAGIEGPINPLMVQSGSTTATANLNYALEHADLFNVPNPITMGTIYRPFASFGGVGMTLALIIATLWVGRSKASRRIAGLSLFPGLVNVSSPVLIGWPVMLNPIMLVPFLITPLINMAIAWTAIRLHLMPPSVYTVPATTPGPLIAFLGTNGNLVALLVAVLCLVISVFIYVPFVRLAETINLESAKVGGHHD
>NZ_CP040780.1|WP_005688216.1|786114_787017_-|alpha/beta-hydrolase
MIKHWRKWLLLVLSVLAMGAVVFPATQWMAQNVKSARVVHNSRMQPIILIPGSSATEDRFNTLITQLNAQTTGHSLLKITVKTNGTMTYSGKIAARDTEPYIVVAFENNKDGYNNIKKQAEWFNIAFKQLAKTYNFNRFRGIGHSNGGLIFTLFLEKYYNDSDVQMTRLMTIGTPYNLEESNPDNRTQMLNDFITSRNKLPSSLTVYSIAGTETLDGDGTVPIESVEAGKYIFQNQVAHYTQITVSGDDANHSALPQNRQIVSLISQYMVATPNQQGVRPGTGGSGRGVGPAPGDGGQNQ
>NZ_CP040780.1|WP_014571073.1|785671_785995_+|hypothetical-protein
MNLIAHQQWLVDFYEKRHWYQYSPFIRLNFLTEETGELSRAIRAIEIGRDHPGEPVQNEADLEANLKEELADVLDQVLILSAKFKIDPNDLLAQSEHKLKARFKQDV
>NZ_CP040780.1|WP_005691299.1|784789_785506_+|ABC-transporter-ATP-binding-protein
MLDVKDLVVNYGGIQAVKGVSFRVQTGEIVALIGANGAGKSTILKTISGLLRPRSGTILYEDKNIVGMAAAKIVKMGISQVPEGRHIFAGLTVSENLQMGAFGLKDKQVASDQLAVVYDRFPVLKERRNQDAATLSGGEQQMLAMGRALMARPKLLLLDEPSMGLSPIFIQEIFDIITKIKSQGTTILLIEQNAKQALAVADRGYVLASGTVKLTGTGADLLADPAVQATYLGAQPAT
>NZ_CP040780.1|WP_047676614.1|784011_784797_+|ABC-transporter-ATP-binding-protein
MTKQLVVEHVNKVFGGLKAVADVSLTIDQGSLIALIGPNGAGKTTLFNMLTGESGPTTGKITLNTATGAVDITKKKAFQVAKLGVARTFQNIRLFGAMSVKENVLVARTHLYHESFLGTVLRLPQFYQKEQAVGMAADELLTFFELNDVADEPTASLPYGTQRRVEIVRAVATKPQLLFLDEPAAGMNPEETADLSRLIARVREHFGITVVLIEHDMSLVMNLAEYIYVLDHGAMIAEGTPQAIQRDPRVISAYLGGEVHA
>NZ_CP040780.1|WP_047676612.1|783064_784015_+|branched-chain-amino-acid-ABC-transporter-permease
MLKNLRSKLIWLAIMVAGFVLIDIGEFTGIVNSFIENALVTIGINIILAVGLNLIIGFSGQFSLGHAGFMAIGAYATAIVTQNIATPLGFYLAMLLGMVIAVIAALIVGIPTLRLRGDYLAIATMGAAEIIRVIINNLKITNGPAGMFNIPPLASWPTVYVLMCVTTVVIVNFVHSRSGRAIMAIRDDDIAAESIGINPTKWKLAAFVLGAATAAIGGSLHASYLQTIAPGDFGIMNSISLLIIVVLGGVGSMTGTFVAAIVLGVIDTVLQNFGTLRMVIYALALILLMVFKPSGLLGHYELSFSRKRRARKEAAS
>NZ_CP040780.1|WP_047676610.1|782181_783060_+|branched-chain-amino-acid-ABC-transporter-permease
MQTMMQQIINGLSLGSIYALLALGYTMVYGIIKLINFAHGDIYMLGAFWGYYAINYLHFGFVTALLSAMLMASLSGVLIEYLAYRPLRNSPRIAALITAIGVSFFLENGMSFLFGANARNFPQVIATKTYHLGGVDISNVQLLILFTSLVLMMLLQFIIKKTTMGKAMRAVAVDPQAAQLVGINPDHVISFTFALGSALAGAAGVMIGLYYNSIDPLMGMVPGIKAFVAAVVGGIGSIPGAAIGGFLIGLLETGVQAIGLSAYKDAAVYLVLILVLVVLPAGLFGKRQREKV
>NZ_CP040780.1|WP_005691311.1|793148_794510_-|FAD-dependent-oxidoreductase
MKILVIGATHAGTFATQQILTDHPDAEVTVYERNNNLSFLSCGIALWVGDHVSDPDKMFYSSPEALAKLGANMQMEHDVLNIDPATKTVEVKDLKTGTVTTDTYDKLVYTTGSTPIIPNIPGIHDSNVYLCKNWSDAKTLKDLAPSIKSAIVIGAGYIGAELAEQFALTDKEVTLIDGLPRVLAKNFDATITDRVEKLYTDHGVHLALNEMVTEFAQADQGIKVTTNKGDYTADIAILCTGFRPNTDLLKDHLDTLPNGAVITNAYMQTSDPDIFAAGDTATVHYNPTGKNDYIPLATNAVRQGILVGKNIMTPTEKYLGTQSSSAVELFDHAIAASGLTVEGAHARGLELDSVTIEQDYRPDFMLTTTPVLCSLTWDPKTHEVKGGAFFSKHDISQSANVISLAIQTHMTIETLAMVDMLFQPNFDQPINWVNAVAMAAVAKAKKKTTTPVA
>NZ_CP040780.1|WP_047676623.1|795057_796851_+|PTS-transporter-subunit-EIIC
MQVIVKRLEKHQALFEKISRNIYLMAIKDGFLAAMPIILFSSIFILLSNIPPLIGIKVPVDLNAWFNKIYNYTMGFVGFYVAGTTAKALTGSMNQRIKGGRFLNNTSTMMASMVGFMLLAIGTTSKGNFLPTFFGTQGILSAFVAAFVTVWVYKFCVERDLTIKMPKEVPGAISQNFRDIIPFGAATLIFSLIDVASRAALKVPFSAIIATVLAPVFKGAETYPGMMFIWFLIPMFWFLGVHGPSVVKPALESALFGNTTANLDLFKAGNFPYHALTENFGNFVGELGGTGATFIVPFLFMFFMKSKQLKAIGKASFIPVMFAVNEPLLFGAPIILNPYFLIPFVLAPVVNVVIGKAFIDFHIMRGFMYFMSWALPGPIGAFIDTNFQWTSLLLMAILLTVDALIYMPFIKAYDAELLEQEAAVDAGTATVAASEGASEVTAEADAATAQEFPEPEEVKQAETAEQEEANQNPAVGKKLDHELKVLVLCAGGGTSEQLANALTEGAKEYHEPIVASAGAYGSHHDILPNYDLVVLAPQVRTYYSDLKHDTDRLGIKLVATKGQQYIALTRDPEKALDFIVENYKDVEKKPQDSSDSQ
>NZ_CP040780.1|WP_033573611.1|796904_797774_+|PRD-domain-containing-protein
MLLKVKQVYNNNAVLVDVGNGKEAILQGKGIGFSKRKGDDVDPKASSEILYLNDTQVKNHFTSLLKDVPIDIVVATFGVIGMAKKKYHYPVLNYIYVTLTDHVFQMYKRLTAGKYQASPAPDIRDRYPLPYQIATDARRQLNHDLGVQFPEAEIKNIALHFINAKGVDGELDPTVTLTARVNAIVTQVFAKYGLNRNFANQNYFDRLMIHLQYLVERLNTNEQDEADLGPEIGQDFRRLYPKSFTIATEICTELEKALQIKLNENEHVYFIIHIQRLIQEPQTLPPEYP
>NZ_CP040780.1|WP_005691321.1|797874_798240_+|PTS-lactose-transporter-subunit-IIA
MATKEEISMTGFAIVAYAGDAKTDLIEALNEARKGNFEHARSLVKEARQSIDDAHNEQTKLLSKEAGGENMDVTFIMVHGQDTLMTTMMLLDTISFTIDEYERLAAIEKQLGIALPTNDIH
>NZ_CP040780.1|WP_047676625.1|798265_799690_+|6-phospho-beta-galactosidase
MTSLLNRVQSLPKGFVWGGATAAYQVEGATKVDSKGKTMWDDYLKAQGRFSPDPASDFYHLYPEDIELAKLYGLNAIRVSIAWTRIFPDGYGEPNQAGVAYYHRLFKCCLDNGITPYVSLHHFDSPKTLFDDGDWLNRKNIDYFVDYADFCFKEFPEVKNWFTINELISLAFSQYIQGNFPPNHHFDVTSAIQAQHNELLAHARVVNLFKEKGYQGRIGLIHVLQPVYPYPDTPANEHAAALEDAFMNRFLLDGTFKGEYTPETMALINELLKANHAKLEIKPGDMDVLKQASTQNDYFGMNYYQPSFVAAYEGESTNSFNGTGEKGTSSFKFQGVGQHVKNPDVPTTDWDWNIYPAGMYDMLKRVAREYPNSKTIYITENGLGYKDKYEGIGNLIEDDKRIDFIDQHLAALLKARSEGVDVQGYFVWSLQDQFSWANGYNKRYGLFYVNFETQAREIKKSALWFRELGKTLKA
>NZ_CP040780.1|WP_047676628.1|799746_800595_-|sce7725-family-protein
MNYFPIIRGKQFDLAAITELLTRQQLPTTVTPILEPVKDIPGITKATRAFSRAQHAAYVIQNPQVGTYRLLATPRHLPDVSGTVQQARIFDAQPAPLIIATTAAQAKLLPRRQLALVPDEARVRQLALPHAVYLNDHFTVYPHTSDYGLLQDEFYQYPPLMLPGIGFADYPLATADYFEHGYPQRALAIHLVYPAADGSLRLHHFVSVNNDDFTNPQAKFFKILVQLAAWLPHHPDAQTLGTKALIAAAAQHHFPGLGVVRKFQLMHHLEMIGRWLEISTTN
>NZ_CP040780.1|WP_049171477.1|800591_801272_-|hypothetical-protein
MKTQLTRDLETTLYAYWQAQGATAVEEVTMPDDFGIVDTLVRQKQQSETIWRCFELKVTKADFHSHAQLSFVGHYNYFVLTQRLYKAVAAEIPAGIGVLVYQPFSKAAIKASAVPVVTPGTLTIAKPARRQTLQVPEDQLTDRFIASLNREVVKAKQVAKGLGQFSTADLFTELRKRTADYDIYHPDKNLYDQFVDELNNTTIGALQEEIDALTAELATLKMARLS
>NZ_CP040780.1|WP_047676630.1|801249_803634_-|ATP-dependent-DNA-helicase
MAHNRIGIREFVELTVRTGDLNPVTSNSNNTAIIGSQIHRKLQAAHRESDYEKEVYLKTTVTVNDEDYQLEGRADGVWTENKTLTVEEIKTSARSWEECSQNTKDRYWAQARIYGHLLCQQRHEDHAVITLVYVQTSTDTVSRFTETKSAADLADDFTDLLDEFTAWLKLRSDIIKQRNASIATLKFPFPQYRTGQHEFAAAVYKAIYSRARLFVQAPTGTGKTISTLFPTIKAMGSGLIQRAFYLTAKQSTRRVAEQAMALMADAGLRAKSITLTAKDTITFADESDDPSQNPYMLGYYDRLKPALHDLLEHEDQLTRSVIESYARKHTLDPFEFSLDASLFCDVVICDYNYLFNPLVFLQRFFSEADDSQFFLVDEAHNLVSRARDMYTASLTNQDFVNLKQALAPFKGTALTKVRRTMTRIVTTMNTLADQLLNGQSLIFQAAPLDDLAQVLTRFTETVHDWLAEPPTPALQPAVELVLPVFFLANQYLRIGDFYDDTFKTEIAKEHDTIMIKMLCLDPSHFVDDALKKGRGAVLFSATLSPMPYFQKLLGGAEHSLAYTLPSPFTPDNQAIIVDASVHTTYRRRTQDLPQLIASLTTLVRAKAGHYLFFFPSYAYLKMAYEAFTAANPDLKTCVQENAMSESERQAFLDHFKAGSEPVIGFAVLGGIFAEGIDLKGTQLIGVAIVSVGLPGINPETDQLRAYFDHDAGQGFAYAYQLPGFNNVLQAGGRVIRGAKDVGVILLIDERFITPRYARLFPDHWTHAQVSYNPTQLAQLLTHFWEAHHENPTHA
>NZ_CP040780.1|WP_049171484.1|803840_805130_+|ABC-transporter-substrate-binding-protein
MKKTSFWRLLGFMGAILLLLTACGKQGSAAKSSSSAPVKITYWHRMTGTYDKSLNKLITKFNNSQKKYKVVATSQGSYNALQQKIMAAGKSKTLPTMAQSPYTNIGDYVKNQLLLPFDSEMLNGSNKLSNRQLKDIYPSFLAAGKYDGKYYGLPFSVSTSVLFYNKKLMSQYNISMPKTWADFAADQDKLKGTDINAIELDQSYDVALEGMAYGAGSQLITPKLKANLNAPKTLAAVNQILDLRKSGALKTAGEDQYFSVPFANGKAVFGIGSSATVPVLLQQAPKSLDWGTAVIPEYEGKRSNPLNGNYNVLFKGASKAQQAGAWAFQKFLLKSENAAQWAKASGYVPVTKSASNSATFKAYLEKNTQYKAAVSAVSQSFASTVFAGYTDYRNDLMSTVDSTLTKNVSGETAFDNLQKQTDKILEENK
>NZ_CP040780.1|WP_049171489.1|805326_805977_+|hypothetical-protein
MEINVHKFQEAILAGTFEHTAVHVTAAAFKKDGIADALTKVFADVRAAIEKDQLIQADLVVDFPEPTTITVETGIINLPFANVNKIPNFLEPDEIVPVRVYLIVASPFVNVSGLRIDEAATAADYLQDFDTINAQMTASVQEKLEHIQTEMAKPKETVKEVPANKQKTTAKKTTRRTTTKKKTTTRKTTKKSTSASKTAPKRTTTKKTTTRKTTKK

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Crispr_ID: NZ_CP040780_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040780_2

1303650-1303795

Orphan

Consensus_repeat	Method
CGTGATGGCCGGTCTTTGGCCATTGCGCCTGAGGTCCTTACAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040780_2

>merge|NZ_CP040780|2|1303650-1303795|CRISPRCasFinder
CGTGATGGCCGGTCTTTGGCCATTGCGCCTGAGGTCCTTACACTCCGATCCCTGCGCCGGGGAGCGCGTTATGGGCGTAAACCAGAATATAAGCGGCCTCAGACGTGATAGCCGGTCTTTGGCCATTGCGCCTGAGGTCCTTACAC

>NZ_CP040780|2|2|1303650-1303795|CRISPRCasFinder
CGTGATGGCCGGTCTTTGGCCATTGCGCCTGAGGTCCTTACAC	TCCGATCCCTGCGCCGGGGAGCGCGTTATGGGCGTAAACCAGAATATAAGCGGCCTCAGA
CGTGATAGCCGGTCTTTGGCCATTGCGCCTGAGGTCCTTACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040780.1\|WP_005687228.1\|1304096_1305740_+\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240529
NZ_CP040780.1\|WP_005688621.1\|1306540_1306756_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|370725
NZ_CP040780.1\|WP_005716995.1\|1307713_1308214_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|240040
NZ_CP040780.1\|WP_047677812.1\|1300004_1300676_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
NZ_CP040780.1\|WP_005688075.1\|1286085_1286526_+\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NZ_CP040780.1\|WP_005687221.1\|1297739_1299218_+\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP040780.1\|WP_049171001.1\|1301096_1303508_+\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_CP040780.1\|WP_005713236.1\|1292705_1293359_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040780.1\|WP_047677818.1\|1295376_1296870_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341045
NZ_CP040780.1\|WP_047677816.1\|1297046_1297517_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133380
NZ_CP040780.1\|WP_047677809.1\|1306886_1307717_-\|NAD(P)H-hydrate-dehydratase	unknown	unknown	gnl\|CDD\|238576
NZ_CP040780.1\|WP_005716991.1\|1310523_1311852_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380032
NZ_CP040780.1\|WP_101836523.1\|1295098_1295380_+\|ATP-dependent-nuclease-subunit-B	unknown	unknown	unknown
NZ_CP040780.1\|WP_033573316.1\|1305744_1306455_+\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_CP040780.1\|WP_047677814.1\|1299214_1299940_+\|DUF4811-domain-containing-protein	unknown	unknown	gnl\|CDD\|374344
NZ_CP040780.1\|WP_005687240.1\|1312066_1312333_+\|ACT-domain-containing-protein	unknown	unknown	gnl\|CDD\|178923
NZ_CP040780.1\|WP_005688627.1\|1308610_1309084_+\|glutathione-peroxidase	unknown	unknown	gnl\|CDD\|238207
NZ_CP040780.1\|WP_005713641.1\|1293537_1294722_+\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_CP040780.1\|WP_047677807.1\|1309190_1310399_+\|putative-C-S-lyase	unknown	unknown	gnl\|CDD\|224090
NZ_CP040780.1\|WP_080751295.1\|1312345_1312471_+\|acetyltransferase	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040780.1\|WP_005687228.1\|1304096_1305740_+\|polysaccharide-biosynthesis-protein	gnl\|CDD\|240529	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins. The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.07256e-124
NZ_CP040780.1\|WP_047677809.1\|1306886_1307717_-\|NAD(P)H-hydrate-dehydratase	gnl\|CDD\|238576	cd01171, YXKO-related, B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.	1.47536e-71
NZ_CP040780.1\|WP_005716995.1\|1307713_1308214_-\|NUDIX-hydrolase	gnl\|CDD\|240040	cd04684, Nudix_Hydrolase_25, Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.53517e-45
NZ_CP040780.1\|WP_047677812.1\|1300004_1300676_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	2.51585e-48
NZ_CP040780.1\|WP_005688075.1\|1286085_1286526_+\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	5.80675e-51
NZ_CP040780.1\|WP_005687221.1\|1297739_1299218_+\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	7.58207e-89
NZ_CP040780.1\|WP_049171001.1\|1301096_1303508_+\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_CP040780.1\|WP_005688621.1\|1306540_1306756_+\|DNA-binding-protein	gnl\|CDD\|370725	pfam09855, zinc_ribbon_13, Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082). This domain, found in various hypothetical prokaryotic proteins, as well as some Zn-ribbon nucleic-acid-binding proteins has no known function.	7.74916e-33
NZ_CP040780.1\|WP_047677818.1\|1295376_1296870_+\|MFS-transporter	gnl\|CDD\|341045	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of multidrug resistance (MDR) transporters including various Saccharomyces cerevisiae proteins such as azole resistance protein 1 (Azr1p), vacuolar basic amino acid transporter 1 (Vba1p), vacuolar basic amino acid transporter 5 (Vba5p), and Sge1p (also known as Nor1p, 10-N-nonyl acridine orange resistance protein, and crystal violet resistance protein). MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. This subfamily belongs to the Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters (MMR-like MDR transporter) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.77903e-65
NZ_CP040780.1\|WP_047677816.1\|1297046_1297517_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133380	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	1.59206e-33
NZ_CP040780.1\|WP_005687240.1\|1312066_1312333_+\|ACT-domain-containing-protein	gnl\|CDD\|178923	PRK00194, PRK00194, ACT domain-containing protein.	1.59405e-38
NZ_CP040780.1\|WP_005716991.1\|1310523_1311852_-\|hypothetical-protein	gnl\|CDD\|380032	pfam17839, CNP_C_terminal, C-terminal domain of cyclic nucleotide phosphodiesterase. This is the C-temrinal domain found in Listeria monocytogenes, Lmo2642 cyclic nucleotide phosphodiesterase. The auxiliary C-terminal domain, consists of five alpha-helices forming a long helical bundle, and is connected to the catalytic domain pfam00149 by two loop segments. It is suggested that this auxiliary domain of Lmo2642 might confer functional specificity to the protein through the interactions with unknown factors or involving the substrate recognition.	4.92459e-21
NZ_CP040780.1\|WP_033573316.1\|1305744_1306455_+\|rRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	1.49495e-81
NZ_CP040780.1\|WP_047677814.1\|1299214_1299940_+\|DUF4811-domain-containing-protein	gnl\|CDD\|374344	pfam16069, DUF4811, Domain of unknown function (DUF4811). This family of proteins is found in bacteria. Proteins in this family are typically between 188 and 241 amino acids in length. There is a single completely conserved residue Y that may be functionally important.	4.33033e-55
NZ_CP040780.1\|WP_005688627.1\|1308610_1309084_+\|glutathione-peroxidase	gnl\|CDD\|238207	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.	4.1286e-84
NZ_CP040780.1\|WP_005713641.1\|1293537_1294722_+\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_CP040780.1\|WP_047677807.1\|1309190_1310399_+\|putative-C-S-lyase	gnl\|CDD\|224090	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism].	5.73204e-136

>NZ_CP040780.1|WP_049171001.1|1301096_1303508_+|leucine--tRNA-ligase
MAYDHHEIDKKWQRYWAEHNEFNTTTDPKKPNYYALDMFPYPSGQGLHVGHPEGYTATDIVARMKRMQGFNVLHPMGWDAFGLPAEQYALNTGHNPRTFTKQNIETFKRQINSLGFSYDWNREINTTDPNYYKWTQWIFEQLYKHGLAYEAEVPVNWSPDLGTVVANEEVIDGKTERGGFPVVRKPMRQWMLKITAYADKLLADLDDLDWPESIKQMQRNWIGKSTGAQITFTVTDTQEKFDVFTTRPDTLFGATYVVMAPEHDLVEKITTPEQQAVVDAYIEEAAHKSDLDRTALDKEKTGVWTGAYATNPVNGEKLPIWISDYVLATYGTGAIMAVPAHDDRDYAFAKKFGIEIKPVIEGGNIDEAAYTGDGVHINSGFLDGLNEQDAIDRMIAWLEDKGIGQEKVNYKLRDWVFSRQRYWGEPIPVIHWEDGETTLVPEDELPLTLPEEVDIKPSGTGESPLANLTDWVNVVDKNGRKGKRETNTMPQWAGSSWYFLRFVDPHNKEALADYDKLKQWMPVDLYIGGAEHAVLHLLYARFWNLFLYDIGAIPNKEPFQRLFNQGMILGDNHEKMSKSKGNVVNPDDVVDEYGADTLRLYEMFMGPLDAGIAWSTDGLAGARKFLDRVWSAFIDDEGKLRDRITTINDGRLDKVYNETVKKVTEDYEALHFNTAIAQMMVFINSARKDDDLPLEYVEGFVKMLAPIAPHLMEEIWQRLGHDHSLTYAPWPSYDESKLKTDTYDMMVQVNGKLRGSITASVDETDDEIKQAALANEKVQKYTAGKDIKKIIVVPRKIINIVAK
>NZ_CP040780.1|WP_047677812.1|1300004_1300676_-|phosphatase-PAP2-family-protein
MLHRRSLPLYFSGTAFMIFIIFLIGILNQASWIQTTDQHVIAFVTRFHVDALKPILIVITELGNPSILIFLTLGLAGVLLIYRYRIAALFTASVGAMMGILNIGIKYLVQRPRPFIADPQIRALVQAGGFSFPSGHSSGTMMFYGTLILLAWTFVRRPTIKWTITLLAGVMIGLTGYSRIFVRVHYPTDVFAGFALGFALLMLSWWYFSPYFSRRHQRHEKSR
>NZ_CP040780.1|WP_047677814.1|1299214_1299940_+|DUF4811-domain-containing-protein
MILWFLGLMVIGLYLSFIMMHRSAKRSTLIAIFSIGLMGSLLLMVLNDNAHFGMEKRTTTDEQTIYTASPNAQMPMLLKQNVGTAGKHVVYIYKTDPKKKAVHTKADLAVSNQVVQTTGTTASMTSRTTRWEYQNSFFSALFNHQGAGQLVAQHNRLVVPKSWIELTTTQAKRLGTKLKALQHPTAQQKATMAAAVKAKAAELAQANPKLASDQAALLKQAQAAVQRAMIQQAVKEVQQQK
>NZ_CP040780.1|WP_005687221.1|1297739_1299218_+|multidrug-efflux-MFS-transporter
MDVKDINGKPVNVPMMVITLIVGTFITVLNQTILSTAFPTLMKAFDISTATVQWLSTGFMLVNGIMIPVSAYLSAKVPSKWLYMSAMSTFFVGTLVAFVANSFGVLLAGRLIQAIGVGITMPLLQNIMMSIFPPNRRGAAMGMAGIAIGVAPAIGPTLSGYVIDNFGWRVLFGMILPIAALVILAAMFFFKNVLPLSNPKLDVPSLIESSIGFGALLYGFSEVGNDGWGDPMVLGSIAVGLIFIVIFGYRQLHLKEPFVELRVFKSKIFALSTALGTIANMAMVGVEMILPLYLQIIHGKSALESGLTLLPGALLIAVMSPVTGQVFDRIGAKRLAQLGLFFLTIATLPYFFLTTNTPSIFITVIYAVRMFGISMVMMPLTTNGMNALTPDMIRHGTAVNNTVRQVATSMTTAVLISVLSNVTNLAKPAASLLKRNPLQYKQDFLNATLNGYHAAFLLAVGFSLVGWVLAFFLNSHAMSQEITIQPEKKVKA
>NZ_CP040780.1|WP_047677816.1|1297046_1297517_-|MerR-family-transcriptional-regulator
MELFNKRLRSLDISLGIGETSRVTGATPTQIRYWEKKHLIHSRRHEANGNKRYSLSNIALIVMIKTMLDEGYTLAKASEEIKKSHQKADMLHVLMSTRLQDIQYDDQQTLLNFGPLENDPTYDVVAVVNEKNAKLYKKPIKPSAAIHQQTTDNLLK
>NZ_CP040780.1|WP_047677818.1|1295376_1296870_+|MFS-transporter
MKQRKTNVAVVTAAIFMGTFMTAIEGTIVSTAMPTIIGSLHGVHLMNWVFSIFLLTNAMATPIYGKLSDKIGRKPVFLIGLTIFVIGSLLSGLSQSMVMLIVFRAIQGVGAGAIMPVTFTIIADIYPFEKRAKMLGFNGSMWGIASVIAPLLGGFIVDQLSWHWIFFINVPLGLITFGLVWFFLQEDRRQVRQPLDMRGTVWLLVALLALMYGFQTLAEPNAIWQLAGMALIAVVGFWRFWQAERRAVDPIIDLKLFENRTFIIHNLIAALISGFVIGFEVYMPMWIQGILGMDASLGGFAVTPSSLMWVVGSFFAGKLLGRFQPKPILTGAMFWLLGGSLVLALVPQSTPYFVFLLVAGCLGLGFGLVITITTVTAQAVVSPDQVGVATSFNTLSRTLGQTLMVSVYGIVLNLRLTQGVAADGRLNSNMLNELINPHTAKQLPASVLPTLRQILYEGLHNIYFFSIVIVALALVANHFEAKKVLAKAATQESDEEA
>NZ_CP040780.1|WP_101836523.1|1295098_1295380_+|ATP-dependent-nuclease-subunit-B
MFALTITRSPAQKSACKDLKRNGQTRAITLKAAYTPTSNRAGSRLTITRSPAQKPACKDLGRDGQSATITPKATYTPVSNRAGSRSHFLRSNL
>NZ_CP040780.1|WP_005713641.1|1293537_1294722_+|methionine-adenosyltransferase
MQERHLFTSESVSEGHPDKIADQISDAILDAMLEKDPNSRVACETTVTTGLVLVVGEISTNAYVDIQSVVRGTIKKIGYTKESGFDPDSVGVLVALDEQSPDIAQGVDESLEARDSDTDPLDKIGAGDQGMMFGFAIDETDTYMPLPISLAHALMRQTDKLRHAGEISYLRPDAKAQVTVEYDDNEQPVRVDTVVLSVQHDPDVTLEEIRRDVEAKIIRKIIPADMMDDDTKIYVNPTGRFVLGGPQADSGLTGRKIIVDTYGGFARHGGGAFSGKDATKVDRSASYAARYIAKNIVAAGLAKRVEVQLAYAIGVAKPVSVSVNTFGTNVISEQVIEQAIRENFDLRPAGIIKMLDLKRPIYEQTAAYGHFGRTDVDLPWEHLDKVQALLKYRD
>NZ_CP040780.1|WP_005713236.1|1292705_1293359_-|hypothetical-protein
MKKIDQSAYAIAFLGQALAYPFLIAMALQVNWTFQLVALLFMTTCLAGTTLVSSNKLMFLLLLAGVSGIIGTINQWLLLPLIIVQIVIAFLLQTQKMPALWVDTVVFGQALLLQITLIYASLHFFNRTMLLDLALLYLPALIGLWANRFPKWTDLILLLVVAILGYVQQRINFIAIGGMFIIVTVINSRRPFKLPRYIYQFSPLIMTLLLYLARMHG
>NZ_CP040780.1|WP_005688075.1|1286085_1286526_+|transcriptional-repressor
MNQAVYNKTINLLKAKQIRVTPQREAIISYMIDSTAHPTAEMIYAKLSPQFPHMSVATVYNNLRLLVDLNLVEEMSSNDAATHFDFPIEPHYHAICTNCGKIFDFTYPGVTDVEAVAAKKTGFKVSGHHLEVYGICPECQIKLGMK
>NZ_CP040780.1|WP_005687228.1|1304096_1305740_+|polysaccharide-biosynthesis-protein
MENSLGGGTQPPRSDKEKMIRGSAWMTAGSVFSRILGAIYVIPWRIWLGAAFLTANALFTKGYQIYSLFLIISTAGVPGAVSKQVARYNAMGEYKTGMRLFYHGTFAMFIMGILSCGAMWLLAPLLAAGDARMIPVFRSLAWPLLLIPSLSLIRGFFQGYNEMAPSAISQFIEQVARILYMLVMTYAIMVAGNHDYLNAVVHSTFAAFIGAVFGLGLLVVYFVRQKPRLDTLVAQSKQALNISVNEILVDVARQAIPFIIMDSTINIYYIVDQYTFNPMMKAFYLVSEDQLDRFYALFAGNANKLIMIIVSLAVAMAITVVPLLAGAKTRGDVEGLARQITNTLQLFFIVMIPSALGMVAVARPLYVLFYRDMDFLGIRLLQFSSILAILLGLFTVLAAILQGLFNNRLAIQEMLVGLAVKVIAQWPMIFFFNVYGPVMATMLGMTVSSLLMLYSTNRMYNIHVRQTIRRGVGILAFSLIMCAVCYLIVDVSGILINPESQFGAAFVLLVAVGVGVLIYGYLILKTRLADMIIGARVSRLREILHIR
>NZ_CP040780.1|WP_033573316.1|1305744_1306455_+|rRNA-pseudouridine-synthase
MRLDKYLSHLQFGSRKEVKALIRDKRVRIAGELVTDPGYNILPGVAVEVNDAQADGPLEVDYLMNKPAGVITATEDPTQSTVLDLIRPHDYRPGLYPVGRLDKDTTGLLLLTTDGNLGHTLLAPNHHVPKTYAAKLAKTLTTEMKRQLEHGVALKDFTTAPADVQVVPATDNKEIHITITEGKYHQIKRMLLAVDNEVVALTRIAMGPLRLPEDLDAGEYRALTDDERSLLDQMVR
>NZ_CP040780.1|WP_005688621.1|1306540_1306756_+|DNA-binding-protein
MDQQQYICPKCQNTSYISDRFQATGGNFSKIFDVQNKKFVTISCTRCGYTELYRSETSSGMNVLDFLLNGG
>NZ_CP040780.1|WP_047677809.1|1306886_1307717_-|NAD(P)H-hydrate-dehydratase
MKQLTEQLARAIVRPRSRNTYKGSFGKILIIGGNAQYGGAAIMSASAAVYAGAGLVSVATDPVNRSALHARLPEAMILDASTSALETAIHQATVIVVGPGLGTDTTALKIVKRVFAAVSQAQVLIIDGSAITLVAAHHLAYPQAQLIWTPHQVEWQRLSGLALAAQTIEASQQAAAKIPGIIIAKSAQTHVFIGHEIYANTAGGPAMATGGSGDTLTGIIAAFAGQFHPLTQAVLAAVFVHSHVADIVAMNSYVALPTMVIRELPAYLKQLSESAN
>NZ_CP040780.1|WP_005716995.1|1307713_1308214_-|NUDIX-hydrolase
MTHKTHRAFGCYGIATIDQRLIVIRKNGGPYIHRFDLPGGSLDGPEPLEHDVLREFSEETGLTATIDRQLGATSFVYPWQYERWTINQHICVFYALTLTGGQLASSVPQFTGQDSLGACALPLAKLSWENASPLVMFAKDYLQTGTPNLSTQTFNDWTVLKEVPTP
>NZ_CP040780.1|WP_005688627.1|1308610_1309084_+|glutathione-peroxidase
MSIYDFEVTLEDGSKYSLNKYKGRPMLIVNTATKCGFAPQFDGLEALYKKYQKAGLIVLGFPSNQFKQELADGHAAAEACRMKYGVSFPMHQLIKVNGQQTAPLFKYLKTEAPGELGKSIKWNFTKFLVDRNGHVVKRFAPKTTPEAIEPAVEELLS
>NZ_CP040780.1|WP_047677807.1|1309190_1310399_+|putative-C-S-lyase
MEDLPTDIATFVDTHLVDRHNSNAVKWDGLKEEFGRADLLPMWIADTEFKAPQAVLDALTARVKEGTFGYSIRPQSYYEAFINWQKERHGITVEPEWMRFGVGVVKSLYAMVNWLTEPGDPVLIMQPVYYPFMNAINDLGRKVVSVDLQLTADGWRMDFDQLEKALAANEIKAMILCSPHNPVGRIWTRDELEQLFAITSRYDVTVVSDEIHGDLEVSGPKFTSALQVAEGKARKKLVVLNAPSKTFNLAALLNSHIIIPDQALRTSYDAFIKQLHPVDTSLMGQVAGEAAYRHGAAWLDQVLQVVRYNYRQLQAGLAAAAPQATLADLQGTYLAYVDIGAYVAPSQIKDFVEGVCGLAVDYGAWFSPQTATYIRLNLATDPKLVAEAIKRLTKHLAQQPQR
>NZ_CP040780.1|WP_005716991.1|1310523_1311852_-|hypothetical-protein
MKVGKYLVALFGMFLLALGLTQIHPDHQTPLTDDAHPRIWVLSDTHFIAPSLHDERSAYTQIKRSAAGKDMDYQPVAIHALVQNALKSRPTALIITGDVTFNGEKTSAESLMHRLQPLVEHGIKVLIIPGNHDIYDGWARAYKGRQQRLTEQISPSDWRQIFHSSYEQAAAQDGNSLSYRVNLNHQYQLLLLDSNIYTIEPSNRPPNTGGKLSPQTMTWVRRQLALGARAHRKSIIFMHHNLYTHNEAVNQGYVLDNSDALKKLLTRYHVPLVFSGHIHAQDISRDPAGQCPTIEIVSGAFSISPASYGVVTFGPQQITYQKQITNLTPYLTAKQRKNPDLLHYQRYLKKLFLQDGEALAYGDLMDNNVTNQRDLDAAARLMGILNWRFFTGNDHPSRAELKRLHADPGWSVLERSAMLRRYLKTIVQDHNLGDQYLRLKLR
>NZ_CP040780.1|WP_005687240.1|1312066_1312333_+|ACT-domain-containing-protein
MQVIVTVIGTDKVGIIAQVTTALANLDVNILDVSQTIMQGAFTMMLLAKIPDDASFKTVKQQLTALGDKIGVEIKVSRQEIFDAMHRL
>NZ_CP040780.1|WP_080751295.1|1312345_1312471_+|acetyltransferase
MTRSPAQKSACKDLGRNGPNPAITPEAAYAPTSKRAGSRSH

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Crispr_ID: NZ_CP040780_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040780_3

1528599-1528742

Orphan

Consensus_repeat	Method
AGGTCCTTACACGCAGACTTCTGCGCCGGGGAGCGCGTTATGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040780_3

>merge|NZ_CP040780|3|1528599-1528742|CRISPRCasFinder
AGGTCCTTACACGCAGACTTCTGCGCCGGGGAGCGCGTTATGGGCGTAAAGGTGGGCTAGTGGCCTTGGTCGTGATGGCCGTACTTTGGCCATTGCGACCAAGGTCCTTACACGCAGACTTCTGCGCCGGGGAGCGCGTTATGG

>NZ_CP040780|3|3|1528599-1528742|CRISPRCasFinder
AGGTCCTTACACGCAGACTTCTGCGCCGGGGAGCGCGTTATGG	GCGTAAAGGTGGGCTAGTGGCCTTGGTCGTGATGGCCGTACTTTGGCCATTGCGACCA
AGGTCCTTACACGCAGACTTCTGCGCCGGGGAGCGCGTTATGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040780.1\|WP_005685812.1\|1534965_1535166_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_CP040780.1\|WP_005711299.1\|1523439_1525275_-\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273919
NZ_CP040780.1\|WP_005711291.1\|1516814_1517861_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NZ_CP040780.1\|WP_047676183.1\|1532531_1533176_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040780.1\|WP_005688915.1\|1531535_1532465_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NZ_CP040780.1\|WP_005685794.1\|1518378_1518588_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040780.1\|WP_049177899.1\|1525720_1528369_-\|YfhO-family-protein	unknown	unknown	gnl\|CDD\|370572
NZ_CP040780.1\|WP_005685807.1\|1530724_1531423_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|376885
NZ_CP040780.1\|WP_005711295.1\|1518804_1519692_+\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|133037
NZ_CP040780.1\|WP_005685788.1\|1515808_1516633_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_CP040780.1\|WP_005713735.1\|1519928_1521002_+\|phosphomevalonate-kinase	unknown	unknown	gnl\|CDD\|130287
NZ_CP040780.1\|WP_005711298.1\|1522312_1523314_+\|peptidase	unknown	unknown	gnl\|CDD\|239806
NZ_CP040780.1\|WP_005685816.1\|1537183_1537762_+\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
NZ_CP040780.1\|WP_005685811.1\|1533482_1534448_+\|membrane-protein	unknown	unknown	gnl\|CDD\|377599
NZ_CP040780.1\|WP_047676181.1\|1536357_1536993_+\|glycoside-hydrolase-family-73-protein	unknown	unknown	gnl\|CDD\|224619
NZ_CP040780.1\|WP_094069295.1\|1521210_1522125_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|224131
NZ_CP040780.1\|WP_005685793.1\|1518129_1518363_-\|DUF2922-domain-containing-protein	unknown	unknown	gnl\|CDD\|378571
NZ_CP040780.1\|WP_047676178.1\|1537770_1539099_+\|purine-permease	unknown	unknown	gnl\|CDD\|274468
NZ_CP040780.1\|WP_047676185.1\|1528824_1530552_+\|membrane-protein	unknown	unknown	gnl\|CDD\|370572
NZ_CP040780.1\|WP_005685814.1\|1535869_1536352_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228

Protein	Function_ID	Function_description	E-value
NZ_CP040780.1\|WP_005685812.1\|1534965_1535166_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	1.42191e-32
NZ_CP040780.1\|WP_005711299.1\|1523439_1525275_-\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273919	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.	0
NZ_CP040780.1\|WP_005711291.1\|1516814_1517861_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	1.16192e-40
NZ_CP040780.1\|WP_005688915.1\|1531535_1532465_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	1.14561e-79
NZ_CP040780.1\|WP_049177899.1\|1525720_1528369_-\|YfhO-family-protein	gnl\|CDD\|370572	pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family.	0
NZ_CP040780.1\|WP_005685807.1\|1530724_1531423_+\|Fic-family-protein	gnl\|CDD\|376885	pfam02661, Fic, Fic/DOC family. This family consists of the Fic (filamentation induced by cAMP) protein and doc (death on curing). The Fic protein is involved in cell division and is suggested to be involved in the synthesis of PAB or folate, indicating that the Fic protein and cAMP are involved in a regulatory mechanism of cell division via folate metabolism. This family contains a central conserved motif HPFXXGNG in most members. The exact molecular function of these proteins is uncertain. P1 lysogens of Escherichia coli carry the prophage as a stable low copy number plasmid. The frequency with which viable cells cured of prophage are produced is about 10(-5) per cell per generation. A significant part of this remarkable stability can be attributed to a plasmid-encoded mechanism that causes death of cells that have lost P1. In other words, the lysogenic cells appear to be addicted to the presence of the prophage. The plasmid withdrawal response depends on a gene named doc (death on curing) that is represented by this family. Doc induces a reversible growth arrest of E. coli cells by targetting the protein synthesis machinery. Doc hosts the C-terminal domain of its antitoxin partner Phd (prevents host death) through fold complementation, a domain that is intrinsically disordered in solution but that folds into an alpha-helix on binding to Doc.This domain forms complexes with Phd antitoxins containing pfam02604.	3.9783e-07
NZ_CP040780.1\|WP_005711295.1\|1518804_1519692_+\|glycosyl-transferase	gnl\|CDD\|133037	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune system of host cells. In E. coli, the three alpha-1,2-glycosyltransferases, that are involved in the synthesis of the outer core region of the LPS, are all members of this family. The three enzymes share 40 % of sequence identity, but have different sugar donor or acceptor specificities, representing the structural diversity of LPS.	1.35015e-36
NZ_CP040780.1\|WP_005685788.1\|1515808_1516633_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	3.06165e-122
NZ_CP040780.1\|WP_005713735.1\|1519928_1521002_+\|phosphomevalonate-kinase	gnl\|CDD\|130287	TIGR01220, phosphomevalonate_kinase, phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase. [Central intermediary metabolism, Other].	2.0716e-139
NZ_CP040780.1\|WP_005711298.1\|1522312_1523314_+\|peptidase	gnl\|CDD\|239806	cd04279, ZnMc_MMP_like_1, Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.	1.58843e-06
NZ_CP040780.1\|WP_005685816.1\|1537183_1537762_+\|xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	1.78198e-121
NZ_CP040780.1\|WP_005685811.1\|1533482_1534448_+\|membrane-protein	gnl\|CDD\|377599	pfam06081, ArAE_1, Aromatic acid exporter family member 1. This family consists of bacterial proteins with three transmembrane regions that are purported to be aromatic acid exporters.	5.11539e-57
NZ_CP040780.1\|WP_047676181.1\|1536357_1536993_+\|glycoside-hydrolase-family-73-protein	gnl\|CDD\|224619	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion].	6.05377e-58
NZ_CP040780.1\|WP_094069295.1\|1521210_1522125_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	8.39864e-170
NZ_CP040780.1\|WP_005685793.1\|1518129_1518363_-\|DUF2922-domain-containing-protein	gnl\|CDD\|378571	pfam11148, DUF2922, Protein of unknown function (DUF2922). This bacterial family of proteins has no known function.	1.762e-09
NZ_CP040780.1\|WP_047676178.1\|1537770_1539099_+\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	1.28118e-180
NZ_CP040780.1\|WP_047676185.1\|1528824_1530552_+\|membrane-protein	gnl\|CDD\|370572	pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family.	0.00019137
NZ_CP040780.1\|WP_005685814.1\|1535869_1536352_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	7.59746e-09

>NZ_CP040780.1|WP_049177899.1|1525720_1528369_-|YfhO-family-protein
MSRSNKQSTWPLLFISFGVTFVISLIVFAALKMAPFGSSSILANDSAVQYVDFFTYLKHALLGTAGKAYSFSNSLGGGMYANWTYYLLSPLNLVFVLVPRSALPVAVLFVTALKYSTAAMAAQALANYLTGGRWYSFVFSISYGLSGFLVANFLNIMWMDGVILLPLVVLGIERLFDEQRLLPYVIPLSLAFITNYYIGFMVAIFAALYFGWRWAIQHQLQLLRKISLFVIGSLLSGMIAAVVLIPTYYALSASRLSSAGADFSFKALYSLIDLPSKLIPGSFNFDQLSNGLPNLYMGMIGLLGASFYFLARTIPVRERLVSAGMTLLLILSIWLNPLAIIWQGFRAPVWYLYRHSFIVIFWFSLLSLRGLMQLRSVSRLRLFLTSLVVGGLLIIPAALRMGTHKYVTLPHLILAGILLLTAAVLLYSYATRLFSVKWTVGALLTLLVIDLGANAYASLGAISFISKADFTVTSKVLSAAYNDAKKIGPSGFYRINADTQRSMDDPYQYNFNGISTFSSVLNTSTINTLTNVGAIGSAGRVKNNDLTWPLESLLGVKQLLLLNTTSKKVGTSEYQQASSRNIFNARYDLPAYKLVGHNQLFNIYENPDALPVATQIFSKIPTQVQANPVLQQNAYFATLTNQQTAPIFTTSDFSGISVDNVKPLTTLTNAVATKVNKKLGASITLSVNPSSEQQYLVMGEGMRKDMTISINNIPLKNDPDNGSKTVSLPLNATKPTTVTLTFNRGFSQIDLDHFALYTLNRQAFKQTVKTAKANAPKQTIQNGRLSLTTQENNSGYIMLTIPYEKGWQADTQSVKIQNYRGFIGIKVPKKATTFTLTYHTPGIPLGWLVTIMGLIGLAALILYEYHPRFRKRMMTGSQPKSR
>NZ_CP040780.1|WP_005711299.1|1523439_1525275_-|PTS-transporter-subunit-EIIC
MSDPAKIATRIMAAVGGIQNVKSLTHCATRLRFTLRDKQQFNQAQLEKMPEVLSTVVAGDESQVVIGANVTKYYAAIQQQYQLHEAGEPNQPTQAQEKNLIKRILNAIVSIMAPIITVLIAGGMFKVVIAILALLGLDPKSTAYLTLSFMADAAFYFLPFMLAVSAAKKFNTNTYLAMMMAGVLLHPNFTALVAAGKPIALFGAPIRLASYGGSVIPIILIVWFMSYVERFAEKVAPNMIKTMLKPLLVALITAPIALIVIGPIGSLLGDGLYTAVTFINQHTPWLVPTLVGAFTPLLVMVGMHVSLLPLATLSMTKFGSETIMGPGMLASNIAQAGAAAAIAVREKQTRGRQIALSASVTALSGITEPALYGVTLKYKHALTCVVVSGGLAGLFAGLTGLVRYSFGSPGIFTLPVFIGANSDNFRNALLTVAIAFGATFLSTYFFATVETNASTSAKTQPQPFQSVVAGEMIPLARVQDEVFAAGTLGHGVAIIPESGTIVAPADATVSMLYPTNHAIGLTTTSGQEVLIHIGIDTVRLDGRFFKPLVSQGESVKVSQPLIKIDLPLIEKSGFDPTVIVLLPNTPPERIEVHEKTSVRPGDKLFSFIPEA
>NZ_CP040780.1|WP_005711298.1|1522312_1523314_+|peptidase
MKRFWKALLSLMLVAIGFGAFGEANQVDARVKFTSNADYYKNEPENAKPSVLSYITTINKNGTMIYDADAVKQKDVITAAAAHWNKAVGINLIMSYQEAHVAKADADVVIEPADLPSGVGGSTGYDGFVYETWQNIIKIGNTTLNAANTPKGFVQAVSTTSHEMGHALGLNHDPGALMGTSGAAELAQGILPAIPDYNVNAVGAILKDLDQLYPGAKSITIPNMTDGPAYRDDSTAKQITANDPVAQLALGLVARNFNGGTLEIKINENVYQVGRGQVGTTDSLHLTNTKQPIVTGYVKADGTRYYQIKVGKQYYIIWGDEDIVTGDIVSATQ
>NZ_CP040780.1|WP_094069295.1|1521210_1522125_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MKVRKAVIPAAGLGTRFLPATKALAKEMLPIVDKPTIQFIVEEAKASGIEDILIVEGKQKRSIEDHFDSAPELEQNLKEKHKDALLQLVHSTTDIGVNLFFVRQPYPRGLGDAVRLAKSFVGDEPFVVMLGDDLMNDKVPLTKQLIDEYDKTHASILAVKKVPHDEVSAYGVIDPEKEVSKDLYNVKKFVEKPAVADAPSDLAIIGRYLLTPEIFDILDNQKPGKGNEIQLTDAIDTLNQTQRVFAHEFKGDRYDVGNKFGYVKTNVEYGLTHPEVKDELRAYILDLAAKLQAGKPVGKPANKK
>NZ_CP040780.1|WP_005713735.1|1519928_1521002_+|phosphomevalonate-kinase
MITAQAPGKLYVAGEYAVVETGFPAIIVALDQFVTVTVEATKHFGSIVSEQYQENSLYWQRQGDEMVFDNRDNPFHYILSAIKLTEQYARELNKPLALYKLYIDSQLDAKDGKKYGLGSSAAVTVATIKALAKFYDLKMSKDQIYKLAAIAHLDVQGNGSLGDIAASVYGGWIAYRSFDKAWLAAARNQMSLSALINAEWPELSIELLTAPADMQLLIGWTGSPASTSQLVDKITLAKAKKPQLYHDFLTASRETLEKLIDGFREHSLSHIQAGIRRNRELLDELAHFSGVAIQTPALRQLVTLAEQAGGAAKSSGAGGGDCGIVLIDSHQAIQPLLAAWRKHHIEPLKFKVHEIND
>NZ_CP040780.1|WP_005711295.1|1518804_1519692_+|glycosyl-transferase
MAKRAVVFCVKGLHIMLATTAITSLVKHYQSQASLKILVLVEEVFPEDIDFIRRIPELYGKTQISIDVWEPPYGMLEKVSDQFESGTRLPKMVLWRLFLPYYFPGYDQLAYLDNDVLVTTDINELFNQLAPNDLIGGVLDYEDATHPDHNRAKEFFLPSVKQYINAGVFVTNTAAYTKWAPLEKMLEVINRRNYPYGDQNIINIVFYDHIHLLPWRFNIQYGHRLLDKYEHLAPQRINEIRAEIDQPGIIHFAANGNFPSPWEKFVPKTQWEKMWWRTFAEIRDKQLASLKMDED
>NZ_CP040780.1|WP_005685794.1|1518378_1518588_-|hypothetical-protein
MSRNVNKQTIVYTLTDPENEAFKQVRRMNNVAADAKDEQLVAIGQAFAKLYPNAALTSIVLQQNAEVTA
>NZ_CP040780.1|WP_005685793.1|1518129_1518363_-|DUF2922-domain-containing-protein
MKTLIFNFKSEAGKSTSIRISKYEGAITAEQAQAFADAVAQAQAFKKEGIGLYATPVGAKVTETQSTEIFTTEKKPA
>NZ_CP040780.1|WP_005711291.1|1516814_1517861_+|glycosyltransferase-family-2-protein
MAGHAALVSVIMPVYNAEKYLTQALDSLLAQDYPNFEVLCVDDGSMDTSKVILATYVRQNPRIRVIRVENGGQARARQIGIQHAKGSLITFMDSDDLVHPQWLATMAEGMRAPRVDMSVVNYYNYIGGTKLKARSFHEKAFKIAGDDKYRYWLEDRDLRGYLWNKMFRAELFSQPVPVANFNLLEDAYFIGQLLPRIDQINFIDEPLYYYRFNATSSVHAKFQKRDLEAIHQLGAVFLTLAREKPELTSLAVRRYAALSLFVLSKMSPRQLVTNWGYVQQLGMVLAQYAREFQGIISAGDADDLATDKSDKASLLDKLRAWSHLLGLPTFDDLNKLADSEDENVKKES
>NZ_CP040780.1|WP_005685788.1|1515808_1516633_+|type-I-methionyl-aminopeptidase
MITIKSAREIKGMAKSGAILAAMHVGLRDIIKPGISSWEIEKFAKEFFESHGAKAEQVGFEGYKYVTCVSINDEVAHAVPRKGLKLKDGDVVSVDTVISWNGYFSDSCWTYGVGKVSEADQKLMDVTKKSLYLGIDEAVVGNRIGDIGAAIQTYTEDDNGYGDVRELVGHGIQPTMHESPNVPHYGVPGHGLRLKAGMTITIEPMITEGTWKIKGKQVPGDTWEYYVTADGSKCAQYEHTLVITDNGPKILTSQGDPIDAKYQLTEDDLKTLPE
>NZ_CP040780.1|WP_047676185.1|1528824_1530552_+|membrane-protein
MRADTEDSSLVSQLKANAIWLLPLLAIILVLLVQWPQLHLTYIFHQDDTMPQLRRMESYVTSVRHGSYFPKVFPEEVRNFGYAFDAFYPSLLLLPYVWLRLTGMGIVSAYYGYQTLILVATVVTAYVSFLRIRRQPLAGFVFSLVYTTAVYRALDAFVRGALGENLAFIFLPVIAAGMYEIYAKQSRNWFLLAFGVTGLMYAHMLSLVMVLVFLVGGFLVLVALQRVTWRMVRYTAMAAVSALLMGLGSYLPMVELSRHLSLKLADSATIWPNYLQFNLGDLVTNSLSMYASTSSMQNVNQAFRPGIGVLMLVTGIALAIFWGKLSRAVKVAAGLGFIGIFLSTDLFPWALFSKTVLGTIQFPWRYLELVTLFFSLALGLLVADRPQPQPLALGLVLATCIVGFSYAININTTMINANTYRITDKNAVSYYQDSTGGGSEYAPREFDMTTFFKKNHQTVLASHNLERVTTPTQDYNDMQFSYTSRRAVTLRLPKFAYVGYTVTVDGRPTAYHPSGKLDRITLHAPAGTHHVRVVYTGTVLQHVTGWISLVAAFVFFAWWIVVHARRQRDVDDALV
>NZ_CP040780.1|WP_005685807.1|1530724_1531423_+|Fic-family-protein
MFSEEIRGDVEVFEDKYKMSDAEEKLLFEKNLPSMIYLAGKYENLSTTLLDTKAIINNLTISGVKPDDVEVVLNLKAAYKYIVGLPQTIQFGIEQIQKINLIIQGAGTPDAGKFRTKTVLVGLTNEDYVPAIPNEANVTKNLEALLTSQKSATEKAILLMLTLSRQQIFTNGNKRTAIVAANALMYQAKVGLLAVPEKKMHWYLSQLAKYYKTGRADQLKRWLYEHAVFGIE
>NZ_CP040780.1|WP_005688915.1|1531535_1532465_-|glycosyltransferase-family-2-protein
MPQSVAIIIPCHNETENVPLIYQALIKTFRESLPQLQPQIWYVNDGSTDDTLDQIKQLQAKDDQVHYIDLSRSFGKEAAMYAGLSTAKADYYAVMDADLQDPPSMLPDMYAILQEGYDMAGAQRVDRSGEAHLRSFFSDMFYKFINKVSQTQIVPGARDFRLMTRQVVEAIVQMTERNRFSKGLFSWVGFKTKYLPYRNIERQHGQTSWSFPNLLRYATDGIIDFSDAPLTFVSIVGITSFIGAFIALIFIVVRAALFGDPTSGWPSMVSIFLMIGGLQLFALGIVGRYIGRIYLETKRRPIFIAREIK
>NZ_CP040780.1|WP_047676183.1|1532531_1533176_-|hypothetical-protein
MKKILIWLAGLALLIAGCSATLNPKQQLKTTTATVQTQVQKEQAALKIIGDSVGAFPSTFEKAYQDHPDTDFRNDDGPVKKLLAKRATAFKQLEAANTALVNANNTLTKLNNQPTDDTPQTQVNKVLTSLQLAKLDHKTLVSYYREMQTAEDAFFDNTADSEETSQADLETQISQLNQYYSSLNQQIDVMTANLTTVSSQADSLAKAVKTMHDD
>NZ_CP040780.1|WP_005685811.1|1533482_1534448_+|membrane-protein
MHIGMRTIKTAVGTAAAMLIAYSLHLEYWAAAGIITILSVQNTTKASFRLVAYRLLATLLGFVIAIGAFLVLGYNAFAFGVFLVIFIPITNVFAVQSGIVMTAVLVTHFMMARSCSWFWIKNELLLLAIGAGVALIANLFMPSLEAKIMGFQKQVEAEMREIIDHMSQQLGADQLKSADNWANLSDLKMTLDAAVAWANRHSDNQLLSENDYYQAYFEMRANQYELLRQMQDSLDRIETPVMQAAVISDALAMTASVLNEDNPAAQLVTMVKKIQRDFAASPLPTDRASFESRARLFYFLEDFSRLLQLKRNFNHIISSQN
>NZ_CP040780.1|WP_005685812.1|1534965_1535166_+|cold-shock-protein
MEHGTVKWFNAEKGYGFITREDGSDVFVHFSAIQGEGYKTLEEGQAVTFEVEDSDRGPQAVNVNKD
>NZ_CP040780.1|WP_005685814.1|1535869_1536352_+|GNAT-family-N-acetyltransferase
MLRFEEVAPDARLQYLDLLLVGDEDPAMLQRYLGAGTLFAAIDQQVPVGVAMVVAVNATTVELKNLAVTPARRRQGIASGLLRHVSLVYAEKYQDMLVGTGDADFDNLRFYMRRGFRFDSIRKHFFDEYSQPVYADGLRLQDMIVLRRKLLLTREDKTKE
>NZ_CP040780.1|WP_047676181.1|1536357_1536993_+|glycoside-hydrolase-family-73-protein
MAKKRRRFTLKKVPLAAWLVIAFFAVGSMLVVSSYWSQRQAEVSQRQAIVDKKAAEKAKKKAFIKRLVPTAQTMQKQYGVLTSITLAQAILESDWGTSTLAKDYHNLFGIKGTDPATTKVLRTKEYVNDKWITVDGRFRVYSDDAASIRDHALLFVNGTDWNPQQYATVRAAKDYKTVASALQTDGYATDPDYPQKLIHLIEAWNLTQYDN
>NZ_CP040780.1|WP_005685816.1|1537183_1537762_+|xanthine-phosphoribosyltransferase
MKLLEDRIKKDGQVIGTDVLKVDNFLNHQVDPDLMADLGKEFYRRFSNEPITKILTVESSGIAPAIATAMSFHKPLVFARKHKSLTLKDHLYTATVYSFTKKTSNEIAISRKFLSADDNVLIIDDFLANGQAVEGLMDIIDQAGATLSGVGIVIEKTFQKGRKLLDDKHIRVESLARIRAFEDGQVVFEPED
>NZ_CP040780.1|WP_047676178.1|1537770_1539099_+|purine-permease
MKNKTISNPKAAALGLQHLLAMYSGSVLVPILIGASLHFTSEQMTYLVSIDIFMCGIATALQVFGNKYFGIKLPVVLGCAVQAVAPLIMIGQKFNFQTMYGAIIVAGLFVFLIGGAFSKLRFLFPPLVTGSLITVIGLSLIPVAFQNLGGGSTTAKDFGNMTNLFVGAFTVLLILAINVWGRGFLHSIAILVGLIAGTVLGGFLGLVSFQPVIEASWFHVPTPFYFGVPQFEWSSIVTMILISMTSMVESTGVFFALGDIVGRKIEADDLKRGYRAEGLAVVLGGLFNTFPYTTFSQNVGLVQLSGIKTRKPVIYSAVFLIILGLLPKIGALATIIPAPVLGGAMLVMFGMVAVQGIRMLQQVDFENDKNLLVAAISIGLGLGVTVQPHIVQFLPKTIQLLFGSGILMTSLSAVLLNWLFNSPSRHPEMPVDRGLNEQDSDK

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Crispr_ID: NZ_CP040780_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040780_4

1635581-1635732

Orphan

Consensus_repeat	Method
GGGCCATCACGCCCAAGGCCACAAGTCCGTCTTTACGCCCATAACGCGTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040780_4

>merge|NZ_CP040780|4|1635581-1635732|CRISPRCasFinder
GGGCCATCACGCCCAAGGCCACAAGTCCGTCTTTACGCCCATAACGCGTTCGCCAGCCCAGAAACCTGCACATAAGGACCTTGGTCGCAATGGCCAGACCCGGGCCATCACGCCCAAGGCCACAAGTCCGCCTTTACGCCCATAACGCGTTC

>NZ_CP040780|4|4|1635581-1635732|CRISPRCasFinder
GGGCCATCACGCCCAAGGCCACAAGTCCGTCTTTACGCCCATAACGCGTTC	GCCAGCCCAGAAACCTGCACATAAGGACCTTGGTCGCAATGGCCAGACCC
GGGCCATCACGCCCAAGGCCACAAGTCCGCCTTTACGCCCATAACGCGTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040780.1\|WP_005684900.1\|1630241_1630412_+\|DNA-directed-RNA-polymerase-subunit-beta	unknown	unknown	gnl\|CDD\|378713
NZ_CP040780.1\|WP_047677797.1\|1644593_1644974_+\|DUF1694-domain-containing-protein	unknown	unknown	gnl\|CDD\|377952
NZ_CP040780.1\|WP_005684901.1\|1629239_1630229_+\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237564
NZ_CP040780.1\|WP_005689008.1\|1628938_1629175_+\|DUF1146-domain-containing-protein	unknown	unknown	gnl\|CDD\|227173
NZ_CP040780.1\|WP_005713318.1\|1632278_1632578_+\|glycine-cleavage-system-protein-H	unknown	unknown	gnl\|CDD\|133457
NZ_CP040780.1\|WP_005710388.1\|1636213_1637044_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
NZ_CP040780.1\|WP_005684879.1\|1644074_1644257_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040780.1\|WP_005713315.1\|1632707_1633832_-\|ArgE/DapE-family-deacylase	unknown	unknown	gnl\|CDD\|181490
NZ_CP040780.1\|WP_005710384.1\|1638119_1638809_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_CP040780.1\|WP_005710386.1\|1637062_1638115_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|236863
NZ_CP040780.1\|WP_005713311.1\|1634333_1635161_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
NZ_CP040780.1\|WP_005684898.1\|1630718_1630940_+\|DUF2969-domain-containing-protein	unknown	unknown	gnl\|CDD\|371411
NZ_CP040780.1\|WP_005684886.1\|1638989_1639757_+\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
NZ_CP040780.1\|WP_005710382.1\|1639749_1640781_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|273908
NZ_CP040780.1\|WP_005710379.1\|1641956_1642403_+\|SUF-system-NifU-family-Fe-S-cluster-assembly-protein	unknown	unknown	gnl\|CDD\|273918
NZ_CP040780.1\|WP_005713773.1\|1631061_1632267_+\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP040780.1\|WP_032952641.1\|1635313_1635451_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040780.1\|WP_005689032.1\|1642395_1643832_+\|Fe-S-cluster-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|131035
NZ_CP040780.1\|WP_005707670.1\|1630420_1630726_+\|membrane-protein-insertion-efficiency-factor-YidD	unknown	unknown	gnl\|CDD\|237697
NZ_CP040780.1\|WP_005710380.1\|1640773_1641970_+\|SufS-family-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|99746

Protein	Function_ID	Function_description	E-value
NZ_CP040780.1\|WP_005684900.1\|1630241_1630412_+\|DNA-directed-RNA-polymerase-subunit-beta	gnl\|CDD\|378713	pfam11772, EpuA, DNA-directed RNA polymerase subunit beta. This short 60-residue long bacterial family is the beta subunit of the DNA-directed RNA polymerase, likely to be EC:2.7.7.6. It is membrane-bound and is referred to by the name EpuA.	5.00157e-07
NZ_CP040780.1\|WP_047677797.1\|1644593_1644974_+\|DUF1694-domain-containing-protein	gnl\|CDD\|377952	pfam07997, DUF1694, Protein of unknown function (DUF1694). This family contains many hypothetical proteins.	1.79956e-25
NZ_CP040780.1\|WP_005684901.1\|1629239_1630229_+\|rod-shape-determining-protein	gnl\|CDD\|237564	PRK13930, PRK13930, rod shape-determining protein MreB; Provisional.	0
NZ_CP040780.1\|WP_005689008.1\|1628938_1629175_+\|DUF1146-domain-containing-protein	gnl\|CDD\|227173	COG4836, COG4836, Predicted membrane protein [Function unknown].	1.07653e-14
NZ_CP040780.1\|WP_005713318.1\|1632278_1632578_+\|glycine-cleavage-system-protein-H	gnl\|CDD\|133457	cd06848, GCS_H, Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.	1.11285e-30
NZ_CP040780.1\|WP_005710388.1\|1636213_1637044_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	3.46322e-100
NZ_CP040780.1\|WP_005713315.1\|1632707_1633832_-\|ArgE/DapE-family-deacylase	gnl\|CDD\|181490	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed.	1.19418e-160
NZ_CP040780.1\|WP_005710384.1\|1638119_1638809_+\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	3.83276e-86
NZ_CP040780.1\|WP_005710386.1\|1637062_1638115_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|236863	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional.	4.77937e-172
NZ_CP040780.1\|WP_005713311.1\|1634333_1635161_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	1.36844e-98
NZ_CP040780.1\|WP_005684898.1\|1630718_1630940_+\|DUF2969-domain-containing-protein	gnl\|CDD\|371411	pfam11184, DUF2969, Protein of unknown function (DUF2969). This family of proteins with unknown function appears to be restricted to Lactobacillales.	2.86889e-19
NZ_CP040780.1\|WP_005684886.1\|1638989_1639757_+\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	1.55434e-132
NZ_CP040780.1\|WP_005710382.1\|1639749_1640781_+\|ABC-transporter-permease	gnl\|CDD\|273908	TIGR01981, UPF0051_protein_Rv1462/MT1509, FeS assembly protein SufD. This protein, SufD, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. SufB and SufD are homologous. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	3.12719e-66
NZ_CP040780.1\|WP_005710379.1\|1641956_1642403_+\|SUF-system-NifU-family-Fe-S-cluster-assembly-protein	gnl\|CDD\|273918	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family. Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	2.21602e-59
NZ_CP040780.1\|WP_005713773.1\|1631061_1632267_+\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	3.53442e-96
NZ_CP040780.1\|WP_005689032.1\|1642395_1643832_+\|Fe-S-cluster-assembly-protein-SufB	gnl\|CDD\|131035	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NZ_CP040780.1\|WP_005707670.1\|1630420_1630726_+\|membrane-protein-insertion-efficiency-factor-YidD	gnl\|CDD\|237697	PRK14379, PRK14379, membrane protein insertion efficiency factor YidD.	5.61861e-47
NZ_CP040780.1\|WP_005710380.1\|1640773_1641970_+\|SufS-family-cysteine-desulfurase	gnl\|CDD\|99746	cd06453, SufS_like, Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.	0

>NZ_CP040780.1|WP_032952641.1|1635313_1635451_+|hypothetical-protein
MTRSPAQKSACKDLKRNGQSRVITSGAADILAYAHNALPGAEVCV
>NZ_CP040780.1|WP_005713311.1|1634333_1635161_+|ABC-transporter-substrate-binding-protein
MKRIWKIFATVVLLGLILVGCGKSGSQASSQKQTTVKIGVVGADNRVLKAVAKKVKKQGINIKIVQFSDYNQPNTALKDHDIDLNLFQHQYFLNNWNKTHNADLVSIGQTIIAPLAIYSKKITKISQIKQGDTIALPNDPTNEGRALQLLQTAGLIKLNKKVALPTTRDVTTNKLNLKLKAVDAAQTASSLPDVAASVVNSGVAQDAKLNPKKAVFTEKVNKQSQPWINVFVANKKDKNNATYKKIVKAFRTKDIADLIEKLYHGSEVPAWTQKF
>NZ_CP040780.1|WP_005713315.1|1632707_1633832_-|ArgE/DapE-family-deacylase
MTDPIAFLQKLIQIDSANGNELAVARVLQAELEAADIPTKLIPYKDDRVNLVAQLNHGDRVLGFTGHEDVVSPGDENAWTYPPFSGKIVNNTMYGRGTDDMKSGLAAMTLALIHLKQSGFAHPIRFMATVGEEFGAMGARQLTEQGYADDLAGLVVGEPTNKLLKYAHGGTVNYEIDSEGVSVHSSRPEKGVNAIEGLVAFATREPHAFDQAPDDPDLGPFRHSITVIKGGDQVNTIPAHAYLRGNLRPTPAANIELVVGLLEKLVDQANKATAANLTLNVLHRFLPVHSDKNGHLVTTANEAIAAVTGKPAELAVAFGGTDASEFIRSDNQFDVIVYGPGDNHFSHQIDEHVDLDSYTTAIKTYEEIAKRFFA
>NZ_CP040780.1|WP_005713318.1|1632278_1632578_+|glycine-cleavage-system-protein-H
MATTYFWQDELAAGQVRLGLTQEAQEALGKIKFVDLPEIGTSLTVGKSFLSVEAEKAVLDLEAPLAGTVVDVHRELSDKPALLDETDHNDNWVVTVSTK
>NZ_CP040780.1|WP_005713773.1|1631061_1632267_+|rod-shape-determining-protein-RodA
MESHEIKSNSEGDRIDYGIILSVMLLALIGLVSIYLATAHDTTTLQNPVRATIMQAAWYVIGGIGIFFVMRFDAEQLWRIAPYLYGIGIFLMIAVLIFYDKTTAINTGAKSWFALGPVSFQPSEIMKPAYILMLSRVVTQHNAAFSHTIQHDWQLIGRMVLWTLPIAVLMKLQNDFGTTLVFLAIFAGVTLVAGINWRILLPIALIGAAIGTLAILLVTQSWGRSFLGSIGFKTYQFARIDSWLNPSGSTSGDSYQLWQSMKAIGSGQLTGKGAFHIAVAVPVRESDMIFSVIGEAFGFIGAAVLILLYFMLIYQMIRVTFDTKNEFYAYISTGVIMMILFHVFENIGMNIGLLPLTGIPLPFISQGGSFLLANMLSVGMVLSMRYHHTSYMFSRDTEDFE
>NZ_CP040780.1|WP_005684898.1|1630718_1630940_+|DUF2969-domain-containing-protein
MAKEKNIKVAQMDETRNGHTVSVLRIGDQEIGFIEPDGTRFAAYVAGSNKPNRFKNIDDAVNALIAEYHLHQG
>NZ_CP040780.1|WP_005707670.1|1630420_1630726_+|membrane-protein-insertion-efficiency-factor-YidD
MKQILTWLVRGYQRFISPLFPPSCRYYPTCSTYMIQALQRHGAVKGLLMGIARILRCNPFVKGGLDPVPAYFTLRRNPHPENDLDLSDIQNLNRKLGGHHG
>NZ_CP040780.1|WP_005684900.1|1630241_1630412_+|DNA-directed-RNA-polymerase-subunit-beta
MDSQYPKRVFHHVKIWLIIALIALILGLLIGFGMGGDNPFKVFLPSTWIHFFNFLR
>NZ_CP040780.1|WP_005684901.1|1629239_1630229_+|rod-shape-determining-protein
MAKDIGIDLGTANVLINVKGKGIVLNEPSVVAIDTHTGKVLAVGTEAYKMVGRTPGNIRSIRPLKDGVIADFDITEAMLEYFINKLNVKGVFSKPNILICAPTNITDIEQKAIIQAAEKSGGRHVYLEFEPKVAAVGAGLDIFQPQGNMVIDIGGGTSDIAVLSLGEIVTSRSLRLAGDKMDASIAAYVKNKHKLIIGEHTAEQIKIKIGAVYDADPKETIEVRGRDIATGLPREVSVTSAEVSDALHETMMAIIDGAKGVLEKTPPELSADIIDRGIMLTGGGALLKGISQLFADELKVPVLLADDPLDAVALGTGVLLDNIEHHRQY
>NZ_CP040780.1|WP_005689008.1|1628938_1629175_+|DUF1146-domain-containing-protein
MFQEIGLNAAITLVSHFVFIMLAFRALNALRFEQFIKANHVREAQVLLLFMAVGLGYLVSSFFLSLVQAALNLPKLFL
>NZ_CP040780.1|WP_005710388.1|1636213_1637044_+|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MKFWKRAIITLALVLPVFVLAACGKSSSSSSKNETVKVGIMSTDKEIWTDIQSRLKKQGVTIKLVQFTDYNQPNQALEDGDIQLNAFQHHNFLNNWNKKHNTKIADIGDTYIGPMRAYSSKIKSLKEVKQGDQISLPNDPSNEGRALQLLAQNKLITLKKGVASPTIRDITSNKLNLKFTELDAAQTARSLNDVAVAVVNNDIAAAANLKPSNAIAVEKITSQSKPWVNFIAAKSSKDKNNATYKKIVKAYQTKRTAELLKKVYKGSTLPAWNYKF
>NZ_CP040780.1|WP_005710386.1|1637062_1638115_+|ATP-binding-cassette-domain-containing-protein
MSDQAVVTLKDVDVEFHGKNRSVHAVDHVSLTVNRGDIYGIVGYSGAGKSTLVRTINLLQRPTGGSIHVLGQDMLALSPAELRKERKRIGMIFQHFNLMNSRTIADNVAFPLKGIKSKQEIQKKVAELLDLVGLTDRANAYPAQLSGGQKQRVGIARALASDPEILISDEATSALDPKTTSSILELLQSLNKRLGLTIVLITHQMEAVKQICNRVAVMDAGAIIERGDLLQVFSDPKQQLTKDFIDTTLQLDQAIEAVMQQPAVKNLGANDRLLRLTYVGDSADKPLVAKLFESYHVTANILFGDIQILQDTPFGNLIVVLSGAQADVNAGIHYLEQQDVKIEDILKKEA
>NZ_CP040780.1|WP_005710384.1|1638119_1638809_+|ABC-transporter-permease
MAQFFTKYFPNVVPIWSGDGGVTQAINETLYMTALTAIVAGILGIVIGILLVLTDEGGLLANHPFYFILDKLVNIFRAVPFIILLAIMTPVTRAIVGTGIGPTAALVPLIAGTTPFYARQVQNALLTVDPGVIEAAEAMGVSPLGIVWRVYLREGLSELIRVSVLTIISVIGLTAMAGAVGGGGLGNLAIAVGYQRYQYDVIIVSLIFILALVFLVQFIGDFFARKSHH
>NZ_CP040780.1|WP_005684886.1|1638989_1639757_+|Fe-S-cluster-assembly-ATPase-SufC
MHTLEIKDLHVKIKAEPEHPEILTGVNLKLATGEIHAIMGPNGTGKSTLAETIMGNPAYEVTQGDILIDGQSILDLAVDERARAGLFLGMQYPQEIAGVTNAEFIRAAINARRPEDDQIRITDFLNQLDKTMATLEMPESMADRYLNQGFSGGEKKRNEILQLMMIHPHFGLLDEIDSGLDIDALRIVAKGVNLMRGPEFGSMIITHYQRLLDYIIPDVVHVMKGGRIIESGGPELAKELEKTGYEHLKVGDQNG
>NZ_CP040780.1|WP_005710382.1|1639749_1640781_+|ABC-transporter-permease
MVETTTLPAPNLPKFSLARYLKNQPDAVEDRVILHAPQDIAYAAGSSEAQRFTPKTSLDAWLLQSPQGATTIDIPAHFVSGDDPIVLTGPKNAGGLLYVHVGKGANVTVQEKWASGGHVLGIWLMLVIEADAQVNWLSYDSFSADTVLVNRTATLADNAKLNWTLAGFSHNSGLNRVDVRLLGQNAEATVNVGVLASGSQHVSYTTSVTNEGQHTVGHINQRGVITGSAHLLFNGIGHIVKGARGSDAQQENRVLMLSPRAEGDANPILLIDENDVTAGHAASVTRVNADQLYYLMSRGLSATLAKRLVIRGFLEGGLAEIDDQRLKKELFATIDRTLVAEDA
>NZ_CP040780.1|WP_005710380.1|1640773_1641970_+|SufS-family-cysteine-desulfurase
MREQFPFFKAHPGLVYLDTAATSQKPQALLDSLQNYYINENANVHRGLYKLAYDTTEAYEGVRQEVADFLGAQSADEIIFTRGTTDSLNLVASAFGPHAVPEGGRIVVSGAEHHSNFIPWQQLAKRQHAKFEVTPVHPDGVVDVPALLAAITPETNLVAIAQVTNVAGDTLPVAAIAKKAHAVGAVVVVDGAQAVAHLPVDVQTLGADFYAFSGHKIYGPTGIGVLYGRANLLAKMPPIQFGGEMISEVRDDVSTWAEGPIKYEAGTPNIAGVIGLGTALHWFKQNVDAAVLKTEHDLADQLRSGLAAIPDVTVYGNQASLATVSFNLAGIHPHDLATFLDEQQIAVRAGHHCAQPLMARLGVPATVRASFGVYNNADDVAKLVEAVQAARRYFHGVD
>NZ_CP040780.1|WP_005710379.1|1641956_1642403_+|SUF-system-NifU-family-Fe-S-cluster-assembly-protein
MALTKLDQMYRAVILDEAQHPRHHGTLTDFDHEITVRNPSCGDVLRLQIREQAGRVEDVAFSGSGCTISQASASLMTEQILGKTPAEIEQMVETFSDLIINGSVPDAEILGDAAVLKGVHQFPARIKCATLAWKAAAQVLTQRGETDD
>NZ_CP040780.1|WP_005689032.1|1642395_1643832_+|Fe-S-cluster-assembly-protein-SufB
MTETKNTKNNEVVAADIDFLPDENPADFKDDIKPVYSTGRGLTEDTVRAISAEKHEPDWMLAYRLKAYATYRKLAMPNFGPDLSDLDLDNMLYFQKATDRTYRDWEDVPDTIKKTFDRLGVPQAERKYLAGASAQYESEVVYHNMRDEFEKLGIIFMDMDSALKEYPELVHEYFGKLVKPSDNKFAALNGAVWSGGSFIYVPKGVQTDVPIQSYFRINAENTGQFERTLIIVEPGAHVNYVEGCTAPNYSSDSLHAAVVEVFVKNDAYCRYTTIQNWSKNVFSLETKRAQALDNATMEWVDGNLGSKTTMKYPSVYLDGKGAHGTMLSIAVAGEGVDQDNGARMIHNAPNTSSSIVSKSIAKDGGAVDYRGTVRFTKKADNAFCHVECDTILMDEKSSSDTIPYNEIHNSTVSMEHEAKVSKVSEEQLYYLMSRGISEAKATEMIIMGFVEPFTKELPMEYAVELNRLIGMEMDGSVG
>NZ_CP040780.1|WP_005684879.1|1644074_1644257_+|hypothetical-protein
MDNYDKARKVLQSMALSKIAQETGISIGQIWHYRDRYEGIQKAPPAYVERIASLYRKKRV
>NZ_CP040780.1|WP_047677797.1|1644593_1644974_+|DUF1694-domain-containing-protein
MAEDLEHFIKAMALGIPTIKPDEKRAFLGNFRERVAMAVTIRQLRDARITAMLDSVLKRYPGYRIFLNGRMGESLVNQYMMQALAHQYPFTIMNQPGMRVTKRVLPTDFGWVLAHPTEKISRPILL

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Crispr_ID: NZ_CP040780_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040780_5

2210549-2210655

Orphan

Consensus_repeat	Method
TACGCCCATAACGCGCTCGCCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040780_5

>merge|NZ_CP040780|5|2210549-2210655|CRISPRCasFinder
TACGCCCATAACGCGCTCGCCGGCCCAGAAACCTGCACATAAGGACCTTGGGCGCAATGACCAAGGCCACTTATGTTCTAACTTACGCCCATAACGCGCTCCCCGGC

>NZ_CP040780|5|5|2210549-2210655|CRISPRCasFinder
TACGCCCATAACGCGCTCGCCGGC	CCAGAAACCTGCACATAAGGACCTTGGGCGCAATGACCAAGGCCACTTATGTTCTAACT
TACGCCCATAACGCGCTCCCCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040780.1\|WP_005685451.1\|2210818_2211493_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP040780.1\|WP_005689845.1\|2218338_2219862_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NZ_CP040780.1\|WP_047677538.1\|2202578_2204396_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176521
NZ_CP040780.1\|WP_047677552.1\|2216428_2217673_-\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|234856
NZ_CP040780.1\|WP_029607331.1\|2207576_2209652_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226957
NZ_CP040780.1\|WP_047677543.1\|2206093_2206831_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293802
NZ_CP040780.1\|WP_047677536.1\|2201292_2201475_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040780.1\|WP_047677560.1\|2221435_2222890_-\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235984
NZ_CP040780.1\|WP_005689841.1\|2215768_2216215_-\|CopY/TcrY-family-copper-transport-repressor	unknown	unknown	gnl\|CDD\|131745
NZ_CP040780.1\|WP_005685443.1\|2219862_2220432_-\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|187714
NZ_CP040780.1\|WP_047677555.1\|2220428_2221439_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP040780.1\|WP_005714022.1\|2212757_2213336_-\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	unknown	unknown	gnl\|CDD\|379137
NZ_CP040780.1\|WP_047677547.1\|2209635_2210406_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NZ_CP040780.1\|WP_047677545.1\|2206899_2207403_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040780.1\|WP_005685462.1\|2201640_2202582_+\|dihydroorotate-oxidase	unknown	unknown	gnl\|CDD\|235045
NZ_CP040780.1\|WP_047677548.1\|2211502_2212606_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|340424
NZ_CP040780.1\|WP_047677550.1\|2213556_2215782_-\|copper-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319850
NZ_CP040780.1\|WP_005685460.1\|2204479_2205163_-\|adaptor-protein-MecA	unknown	unknown	gnl\|CDD\|235030
NZ_CP040780.1\|WP_005685464.1\|2200893_2201280_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040780.1\|WP_005685459.1\|2205444_2205843_-\|transcriptional-regulator-Spx	unknown	unknown	gnl\|CDD\|179316

Protein	Function_ID	Function_description	E-value
NZ_CP040780.1\|WP_005685451.1\|2210818_2211493_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	7.22544e-70
NZ_CP040780.1\|WP_005689845.1\|2218338_2219862_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NZ_CP040780.1\|WP_047677538.1\|2202578_2204396_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176521	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.	2.49546e-112
NZ_CP040780.1\|WP_047677552.1\|2216428_2217673_-\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|234856	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional.	2.66953e-152
NZ_CP040780.1\|WP_047677543.1\|2206093_2206831_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293802	cd07716, RNaseZ_short-form-like_MBL-fold, uncharacterized bacterial subgroup of Ribonuclease Z, short form; MBL-fold metallo-hydrolase domain. The tRNA maturase RNase Z (also known as tRNase Z or 3' tRNase) catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors. Two forms of RNase Z exist in eukaryotes, one long (ELAC2) and one short form (ELAC1), the former may have resulted from a duplication of the shorter enzyme. Only the short form exists in bacteria. Members of this bacterial subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	2.18743e-69
NZ_CP040780.1\|WP_029607331.1\|2207576_2209652_-\|ABC-transporter-permease	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	2.18762e-05
NZ_CP040780.1\|WP_005685443.1\|2219862_2220432_-\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|187714	cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART). Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities.	2.27875e-85
NZ_CP040780.1\|WP_005689841.1\|2215768_2216215_-\|CopY/TcrY-family-copper-transport-repressor	gnl\|CDD\|131745	TIGR02698, Uncharacterized_16.5_kDa_protein_in_ptsI_3'region, copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI. [Transport and binding proteins, Cations and iron carrying compounds, Regulatory functions, DNA interactions].	2.05608e-48
NZ_CP040780.1\|WP_047677560.1\|2221435_2222890_-\|amidophosphoribosyltransferase	gnl\|CDD\|235984	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional.	0
NZ_CP040780.1\|WP_047677555.1\|2220428_2221439_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	5.48392e-170
NZ_CP040780.1\|WP_005714022.1\|2212757_2213336_-\|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	gnl\|CDD\|379137	pfam13353, Fer4_12, 4Fe-4S single cluster domain. This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich.	3.16014e-75
NZ_CP040780.1\|WP_047677547.1\|2209635_2210406_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	1.73201e-102
NZ_CP040780.1\|WP_005685462.1\|2201640_2202582_+\|dihydroorotate-oxidase	gnl\|CDD\|235045	PRK02506, PRK02506, dihydroorotate dehydrogenase 1A; Reviewed.	0
NZ_CP040780.1\|WP_047677548.1\|2211502_2212606_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|340424	cd16948, HATPase_BceS-YxdK-YvcQ-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Bacillus subtilis BceS, YxdK, and Bacillus thuringiensis YvcQ. This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) such as Bacillus subtilis BceS and Bacillus thuringiensis YvcQ, the HKs of the two-component regulatory system (TCSs) BceS-BceR and YvcQ-YvcP, repsectively, which are both involved in regulating bacitracin resistance. It also includes the HATPase domain of YxdK, the HK of YxdK-YxdJ TCS involved in sensing antimicrobial compounds.	7.81867e-44
NZ_CP040780.1\|WP_005685459.1\|2205444_2205843_-\|transcriptional-regulator-Spx	gnl\|CDD\|179316	PRK01655, spxA, transcriptional regulator Spx; Reviewed.	6.44127e-79
NZ_CP040780.1\|WP_005685460.1\|2204479_2205163_-\|adaptor-protein-MecA	gnl\|CDD\|235030	PRK02315, PRK02315, adaptor protein MecA.	3.18407e-97
NZ_CP040780.1\|WP_047677550.1\|2213556_2215782_-\|copper-translocating-P-type-ATPase	gnl\|CDD\|319850	cd07552, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to Archaeoglobus fulgidus CopB, a Cu(2+)-ATPase. Archaeoglobus fulgidus CopB transports Cu(2+) from the cytoplasm to the exterior of the cell using ATP as energy source, it transports preferentially Cu(2+) over Cu(+), it is activated by Cu(2+) with high affinity and partially by Cu(+) and Ag(+). This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0

>NZ_CP040780.1|WP_047677547.1|2209635_2210406_-|ABC-transporter-ATP-binding-protein
MAILEVSNLSKIFGQRHDRVRALNDLSFQVKAGEFIGIMGPSGAGKSTLLNILATIETPSTGKVRIAGHDLEALNERQQAKFRRDHLGFVFQDFNLLDDMTVAQNVLLPLTLQHHVQPDRAERLQMVSKHLNLDALLNAFPGELSMGQRQRVAAARAVITQPSLLLADEPTGSLDSLAATEFLRYLRQLNQQEKMTILMVTHDPFTASFASRIIFIKDGAFFAEVTRGKSREQFFDRIIDMEATVSGGGHSRVGTD
>NZ_CP040780.1|WP_029607331.1|2207576_2209652_-|ABC-transporter-permease
MWEQIKTNLIRHRHEDGLQILIAALISAIMYAIGAVANNRLILSDASKRLGSLDIVPSLLMIVMMVLALFSISFLLYLNSLLIGRRDQEIGLYRLLGLSGAKLGLIVFLESVMIGIVGLFVGALLGLILSPLLGMVLIRLMALHTPIGFMFSLSALMDVLTLMGVVYLLVGAINAIYVRSPLRQFIRQQDVPAPPKPQTRWRFWVGIFGFLLLVGSLLTMLRLLPIGGRLMRILSWLPGPIVLPLFLLLVIGALLLGLFLVFAYFLPGLVAWYQKRHEMQTHNASGISRHLIIKRLQGNAHSLWLTTLLCAITITMLGSSVMLFQYNQDLVLREIPTTIVASGVGVDNVTDILKQAKVKPKQAMTIPSKLVYAEIRLRNQIGEVRKQPGVYNVVALRDYQRAAKIQRELGPIRLHSQEAKLMLPTRSGFRPVGARRNPNRAIILPGSDTSLRLTQTTNLFPTGSNNYFDRGLLVTNRTFDMLNGTPDRLYMAKLPKTKAAKRALTLLQHLGNSKNLEEFVNIGIQQREGDDLTVTDRASTNMVYWRNPIGLQAAEQNFVSTLYGFLLFLILLLSGVFVVATGSILLLKQVIAVRQEIRHFQILKQLGMDPHQIRVTLYRQAAVIFAVPLICGILIALCVISVMTNYLDNPPSRYLGVMIGIYAAFDWLFYEATVHVMVRMVDSPIGRWRTE
>NZ_CP040780.1|WP_047677545.1|2206899_2207403_+|hypothetical-protein
MSTIQTVFGSKSFLTKLLDERHDPQLKLLKPAQSGLDYMIFDPSGQAAFSAPLRYEILASLGKTEQSGYVHFMYFNLDTDDVKVFLSKIKQLIDNHDILLGENHILLAQEAKHPDNFLVMSVWQTSNDYYEFKNTPALASVKEFIRRAASANGFHEAGYTVIDPHKK
>NZ_CP040780.1|WP_047677543.1|2206093_2206831_-|MBL-fold-metallo-hydrolase
MKLTVLGYLGGYPDAGHATSTYLIESGDYHLLMDLGSGGLLALEKVFDPLQLDAVLLTHYHHDHTADVGVLQYFYQLRKGNKKVSPLPIYGHTKDPLNFGSLTFGPFTQGIGYTGDSTLHLGPLTLTFLETQHPVPAFAVRIKEEGTNKVLVNTSDTRYFSGLVPFAKHADLLMADTNFLADQPAPRWHLTAPEAGTLAKEAQVKRLLLTHLPQQLDLVTLKDQAQAAAGGIPIDVAGDDLTINV
>NZ_CP040780.1|WP_005685459.1|2205444_2205843_-|transcriptional-regulator-Spx
MVILYTSPSCTSCRKARAWLKENKIPFQERNIFSDPLNVDEIKRLLMMTEEGTEEIISTRSKIFQELGVNIDELSTGTLIKLVAKYPGLLRRPIMMDDKRLQVGYNEDEIRRFLPRSVRTLELQQAQLLAGF
>NZ_CP040780.1|WP_005685460.1|2204479_2205163_-|adaptor-protein-MecA
MEMERINANTIRVMLGNDDLAQRGITVLDLLGNHKQIESFFYSILDEVDKDHTFATNEAVTFQVMPSQSGLELLISKNGQKNDDSDTGSDGDSADTQVPDYIRQQLQGLDANDQHDQQAVDEGGYIDAAKAPQTELVLKLKDFEDFISLAQTLRLEGGKSDLYRYKQNYYLVLTFYPNEISSNEAHDEMAVALEFGDRSPLSSAVLSEYGKRLMETSALETARYYFK
>NZ_CP040780.1|WP_047677538.1|2202578_2204396_+|glycerophosphodiester-phosphodiesterase
MKKKIKVWSLFTRNTKDFAHHWGAYFLLISVTNLAVGLAIIPLLTFSAQQILRLGNVPYITLTNLGTIIVEKPSTAVLLLLIGLLLLLFVYWQFAFLILGIQNIHRQTHLNFRQLALATIKKTRRLTPATIMILIAYFVLVFPFSSIVFKTSLLAKLTIPDFIIDFILDRWYLAILVVLLYLIGTWLAVRLLPLLPALILGDEHPAATVVRSWRATRGQAWRTLFSIILIVIPVMVLTVLLILGLYGFQTYLDQQWQQWSLLGATINLGLLQVTLLLITVFFTVMLYQLATAQAETFQLISVQTIDAPVSKRRRTVLFRLSALALILLVVASTSAFYHAYLTGALTTQPLTISHRGVDNGNGVQNTIPALEATAKEKPDYVEMDLHETKDHQFVVMHDENLSALTGRNARPHDLTLAELTQLTARENGHAAKVASFDDYLAAAEAAHQKLLVEIKTTPYDSPEMMDRFIQRYAQRLLADHDQVHSLDYHVVTTLRKKVPTLKTFFILPYTLVFPATPASGYTLESTTLSTTVTDQAHARHQAIYAWTVNDSDDMQKMTFMDADGIITDQLATLKTTLRQMNDHPSYADQLLNYMTSFSSGDNSPF
>NZ_CP040780.1|WP_005685462.1|2201640_2202582_+|dihydroorotate-oxidase
MTDLRTSIDGFKFDNVFMNASGVRCYTEQELDELVQSDAGTLVTKSATQAKRLGNPSPRYARLELGSINSMGLPNEGLDYYLNYALNFQKAHPDQPIFISVAGLSMEENLAMAHTIEDSDFNGLVEFNLSCPNVPGKPQTGYDFDRTQEVLTNLFSFFTKPAGVKLPPYFDLAQFDQMAAILNQFPLKFVNSINSLGNGLMIDPETDTVLIKPKGGFGGVGGAYAKPIALANVRAFAQRLNPQIQIIGTGGITNGRDAYDLILAGASLVQVGTLLQEEGPAVFTRLKRELAAVMQTKGYTQISDFKGQLKTLS
>NZ_CP040780.1|WP_047677536.1|2201292_2201475_+|hypothetical-protein
MQVIRIGLLIIFIGASVLTLIGLLGWLILMLSHHDPEKIRRLTLISGGIALAALILNAFT
>NZ_CP040780.1|WP_005685464.1|2200893_2201280_+|hypothetical-protein
MAKTGRHYYFVARNEKTKTGYHISFPNIPNAEAVGTTYEETVYYSYRVLADFLSHLPKQEAEIRAYTLSDIPDTVASNVFYSLVSVTPDFDPHKMETHFTLPQTPPADIRQKAAKLAGLVTPNDNLAL
>NZ_CP040780.1|WP_005685451.1|2210818_2211493_+|response-regulator-transcription-factor
MFKIMIVEDDQTISGLIADNLKKWQFEPVVVTDFNAVFDDFLQEKPHLVLLDINLPVFDGYYWVQKIREVSKVPVIFISSRNTNMDMVMAMNMGADDFLNKPFAMEVLIAKINALLRRTYNYADQGTDVLEHNGLMLNLKNGMAQIGEKEINLSKNEYKLLQILMRQHGQIVSRSRLLRDLWQDERFVDDNTLTVNVNRLRKKIEEAGLKDYIQTKVGQGYIVP
>NZ_CP040780.1|WP_047677548.1|2211502_2212606_+|HAMP-domain-containing-histidine-kinase
MRFRDYFKDHIWAIGGYILCVGLAAIIVWLDPQHRVKLATVWYAVLLVTLVASAFFIAHFVRIRQFAARLQARQNAEDAALDWPLPGGQSGLEQVVSDTYNKILTLHRQQITALLAQHQDQKDFIDSWVHEIKVPLAAVSLLAESFEGQVPDNKLDNLNLQLDQIEFYVEQVLYYSRLDSFSKDYLLHNTQLKPLINDVVANQRNGFINKRLSFKLNGDDQTVLTDNKWLRFILAQLISNAVKYTPEGGRIQATIRDTGKETQLMIIDNGIGIPKDEQHRVFEKGFTGSNGRLSNHKSTGLGLFLAEKLAEKLGHHLTLTSVINQGTTVTIHFPYVSYYNDAGQTVEHPKKALHQTADTSDSSNQNE
>NZ_CP040780.1|WP_005714022.1|2212757_2213336_-|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein
MTTARLPQNPQPKEWLASELSQQRIADYKPFNFVDGEGVRCSLYVSGCRFACPGCYNRVAQNFRYGQPYTQELEDRIIADLGQSYVQGLTLLGGEPFLNTQVCIRLCRRIRQEFGHDKDIWSWSGYTYEELMQDSEDKLTLLSLIDILVDGRFLLAKKDLTLQFRGSSNQRIIDVPATQAAGEIKLWKNLIR
>NZ_CP040780.1|WP_047677550.1|2213556_2215782_-|copper-translocating-P-type-ATPase
MKKDNMNPSQKMKESANDKGQMQMSHHDQMHAGKMTDMSMDHEHMHQQTDMASMQMSHHDMGHMAMDHSGMDMHMDHGNMDHGGGHMMHMGNLKQKFWVSLIVMIPVLLLAQFMGMNIHLGAIELPIVFPGSDWVVLVLSSFLFFYGGWPFLTGAKAELQQRQPAMMTLIAMGITVAYGYSLYAFLMNNFIAPNGMVMDFFWELATLIVIMLLGHWIEMNAVMAAGNAVEKLAALLPNQAHVVHGDHVMDMPLSEVQVGARLRVLAGEQMPADGQVVSGNSSVNESLVTGEAKAIRKAEGDQVIGGSVNGDGVIEIKVTGTGESGYLSQVMKLVQSAQANKSKAEGMADKVAGWLFYAALAVGLLAFFLWLPSGAAVAFERMVTVFIIACPHALGLAIPLVIARSTSIGATNGLLIRNRQALETAKRAQFILMDKTGTLTEGKFTVAKTIAFAGHDQTQVLSVMAALENHSEHPLATGIKAAAKQQALKLPDAQNVQVLKGIGLEGEIDGQRYTIVNARYLKDHHLAYDEAQADQLAGAGNSLAFLIQDDQVLGMVAEGDQLKPSSKSFVAALKQQGITPVMLTGDNHETAKKVADQLGITDFQAELKPEDKVAQVEAYQKRGVVMMVGDGVNDAPSLAQADIGVAIGAGTDVAIDTADVVLVHSDPADILNFLSLAKATNRKMVQNLWWGAGYNILAIPLAAGILAPVGFILSPAVGAAIMSISTIVVALNAMTLHLKRA
>NZ_CP040780.1|WP_005689841.1|2215768_2216215_-|CopY/TcrY-family-copper-transport-repressor
METPKVEISQSEWEVMRIIWTLGPLKSSTIAAILADKMAWKIATTKTFLGRLVKKGALVTEKQGREFLYHATVGEQASMDAAVAELFSHLCQMKIGTTVNHLVAQVTLSKKDIQAVQQTLAAKLPGAPTTVHCNCLPDGCKEAIDEER
>NZ_CP040780.1|WP_047677552.1|2216428_2217673_-|phosphoribosylamine--glycine-ligase
MKKVLVIGGGARESALALKFSQSPQVDHVYVAPGNPAMELLGVEPIGIKEKEVPALIKFAQTHQIDLTFVGPEVPLAAGIVDDFQAIGLPIFGVTQKLAQLESSKTFAKAFMHRHHLPTAASKTVHSAIEAHAEATLMGLPLVLKKDGLAAGKGVVIANDAATLDDTIEQFYAGHPDATVLLEEYLAGEEASVMALFNDQRRVILPLSQDHKRRHAADRGPNTGGMGAISPLPQFKPDQVQAAQSLVDATLAGMHQDGLNGHGVMYIGLIFTKEGPKILEYNMRFGDPETQVLLPQIENDFYQLVSDLLDGQQPTLKLNGLAYACFVAVNPDYPRANLKTVPVIVPTNWPIGTWLPAGVTRADGGWISDAGRIFSVVAGAATLPEAVAKAKHDLESIQGVLDYRTDIGFHALKG
>NZ_CP040780.1|WP_005689845.1|2218338_2219862_-|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MKRALLSVSDKTGLVPFAKGLVERGFELISTGGTHRALAEAGVAVTGVEAVTGFPEMLDGRVKTLHPKIHAGILARRDDPAHMQALADHDIQPIDVVCVNLYPFAATIQRAGVTRAEAIEQIDIGGPSALRAAAKNSDSVWAVVDPADYADVLAGLDQNDADLRQRLAAKVFSVTAAYDAQIAHYLDPEPFPEQFTPTYHKRQDLRYGENSHQQAAFYVEPNPDPTSLAAAKQLHGKELSYNNIKDADAALAMLREFKQPAAVAVKHMNPCGIGLGDTLEAAWDKAYAADPMSIFGGIIALNRRVDLATAEKMHKLFLEIIMAPAFDDDAYEILAKKKNVRLLTINTADTPEELGTETTSIYGGLLIQTRDDKAETPADMTVVTEVKPTEAQLKALAFAQTVVKHVKSNAIVVAQADQTLGIGAGQMNRIGSVELALTQAQQNDNFAGAVMASDAFFPMDDCVDYAAKHDIKAIIQPGGSIRDKDSIAKANEYGIAMVTTGVRHFRH
>NZ_CP040780.1|WP_005685443.1|2219862_2220432_-|phosphoribosylglycinamide-formyltransferase
MKSLAVFASGNGTNFEALANAAQAVDSHYQIAVLVCDQMQAPVIQKAAARHIPTLVVNFKDYANKAAAETYILSQLPPVDALILAGYMRIIGPTLLNAFPKRIINLHPALLPSFPGRQGIKDAFDYGVKVTGVTVHYVDAGIDTGEIIAQDPVRVSPGMTLAQLEAAIHHQEHQTFPATVKQLIEEGAI
>NZ_CP040780.1|WP_047677555.1|2220428_2221439_-|phosphoribosylformylglycinamidine-cyclo-ligase
MTDYKDAGVDIEAGDAAVKRIATLAKETANDNVLASVGGFAAAYRLPSVPQPTLISATDGVGTKLLLALQCDAHETVGIDLVAMVANDLLASGAQPLFFLDYMAVDHLNVTRAEAVVRGIAYGCQQAEMALIGGETAEMPDMYPQNHYDLAGFAVGLVSEPNRLPKDVAAGDVLIGLPSSGVHSNGYSLVRKLLAETDLGSQTLEDGSEVMQALMRPTRIYVKQVLPLMQQGLIHAAAHITGGGITENLPRVIPSGLCAQVNPQAWHRPELFDRLQHAGHLSETTMRTTFNLGIGMILVVPEHAATTIQAALPSSKVIGHVVADPSAKIQWQVASK
>NZ_CP040780.1|WP_047677560.1|2221435_2222890_-|amidophosphoribosyltransferase
MLSEPKGLNEECGVFGIWGNPNAASITHLGLHTLQHRGQEGAGIVGLTKDGMRRHYGLGLLSEVFTNTDQLTPLMGRAALGHVRYSTAGGRVLENIQPLLFRFSDEAIALAHNGNLTNAISLRRELESQGAIFQSTSDTEVLMHLIRRQVGQPWLVQLKKALNEVHGGFAFVLLTEHGLYAAVDPHGFRPMVVGVMPDGGYIVCSETAALDAVGADFVRDVQPGELITIDDDGLHLDHFTTNTSLAVCSMEYIYFARPDSDIHGINVHQARVRMGERLAREQPADADIVVGVPNSSLSAAIGYAKASGIPYEMGLVKSQYVARTFIQPTQALREKSVKMKISVIKPVVAGKRIVLVDDSIVRGTTSKQIVKLLKEAGAAEVHLRIASPPLRFPCFYGIDFQTTSELFAANHSVPEMRDLLDVESLGFLSTQGLEDSVGLQTTAPNGGLCVAYFTGKYPTALDDYAPALNKEVASLKVNVAEVSA

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Crispr_ID: NZ_CP040780_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040780_6

2620032-2620148

Orphan

Consensus_repeat	Method
CTTATGTTCCGGTTTACGCCCATAACGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040780_6

>merge|NZ_CP040780|6|2620032-2620148|CRISPRCasFinder
CTTATGTTCCGGTTTACGCCCATAACGCGTTCGCCAGCCCAGAAATCTGCGTGTAAGGACCTTGGGCGCAATGGCCAAAGCCCGGCCGCTTATGTTCTGGTTTACGCCCATAACGCG

>NZ_CP040780|6|6|2620032-2620148|CRISPRCasFinder
CTTATGTTCCGGTTTACGCCCATAACGCG	TTCGCCAGCCCAGAAATCTGCGTGTAAGGACCTTGGGCGCAATGGCCAAAGCCCGGCCG
CTTATGTTCTGGTTTACGCCCATAACGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040780.1\|WP_005713108.1\|2622379_2623258_-\|homoserine-kinase	unknown	unknown	gnl\|CDD\|234920
NZ_CP040780.1\|WP_047677473.1\|2609906_2611004_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|224594
NZ_CP040780.1\|WP_005714699.1\|2610993_2612070_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NZ_CP040780.1\|WP_005692619.1\|2613159_2613570_+\|GtrA-family-protein	unknown	unknown	gnl\|CDD\|377229
NZ_CP040780.1\|WP_047678494.1\|2630716_2631709_-\|D-2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240662
NZ_CP040780.1\|WP_014569940.1\|2629017_2629431_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040780.1\|WP_014569933.1\|2615607_2616510_-\|glycine/betaine-ABC-transporter	unknown	unknown	gnl\|CDD\|270357
NZ_CP040780.1\|WP_005713097.1\|2617365_2618589_-\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226643
NZ_CP040780.1\|WP_047678481.1\|2623223_2624738_-\|threonine-synthase	unknown	unknown	gnl\|CDD\|236418
NZ_CP040780.1\|WP_005713106.1\|2620838_2622098_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226433
NZ_CP040780.1\|WP_080751282.1\|2619828_2619984_+\|alpha-galactosidase	unknown	unknown	unknown
NZ_CP040780.1\|WP_047678478.1\|2620328_2620790_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|238182
NZ_CP040780.1\|WP_047677468.1\|2618941_2619673_-\|DNA/RNA-nuclease-SfsA	unknown	unknown	gnl\|CDD\|224406
NZ_CP040780.1\|WP_139041940.1\|2627501_2629034_-\|flotillin-family-protein	unknown	unknown	gnl\|CDD\|259798
NZ_CP040780.1\|WP_005684724.1\|2616521_2617373_-\|proline/glycine-betaine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226644
NZ_CP040780.1\|WP_005684728.1\|2612160_2612862_-\|class-A-sortase	unknown	unknown	gnl\|CDD\|320680
NZ_CP040780.1\|WP_047678485.1\|2624845_2626045_+\|homoserine-dehydrogenase	unknown	unknown	gnl\|CDD\|235783
NZ_CP040780.1\|WP_047678488.1\|2626041_2627388_+\|aspartate-kinase	unknown	unknown	gnl\|CDD\|236364
NZ_CP040780.1\|WP_047678491.1\|2629659_2630703_-\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|379113
NZ_CP040780.1\|WP_029943740.1\|2613661_2615422_-\|pyruvate-oxidase	unknown	unknown	gnl\|CDD\|213733

Protein	Function_ID	Function_description	E-value
NZ_CP040780.1\|WP_005713108.1\|2622379_2623258_-\|homoserine-kinase	gnl\|CDD\|234920	PRK01212, PRK01212, homoserine kinase; Provisional.	5.27713e-89
NZ_CP040780.1\|WP_047677473.1\|2609906_2611004_-\|serine-hydrolase	gnl\|CDD\|224594	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms].	5.93669e-33
NZ_CP040780.1\|WP_005714699.1\|2610993_2612070_-\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	1.4845e-35
NZ_CP040780.1\|WP_005692619.1\|2613159_2613570_+\|GtrA-family-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	3.94504e-14
NZ_CP040780.1\|WP_047678494.1\|2630716_2631709_-\|D-2-hydroxyacid-dehydrogenase	gnl\|CDD\|240662	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains. D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.	3.99223e-164
NZ_CP040780.1\|WP_014569933.1\|2615607_2616510_-\|glycine/betaine-ABC-transporter	gnl\|CDD\|270357	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to betaine compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine and proline betaine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.7513e-75
NZ_CP040780.1\|WP_005713097.1\|2617365_2618589_-\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226643	COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism].	0
NZ_CP040780.1\|WP_047678481.1\|2623223_2624738_-\|threonine-synthase	gnl\|CDD\|236418	PRK09225, PRK09225, threonine synthase; Validated.	0
NZ_CP040780.1\|WP_005713106.1\|2620838_2622098_-\|hypothetical-protein	gnl\|CDD\|226433	COG3919, COG3919, Predicted ATP-grasp enzyme [General function prediction only].	1.90698e-104
NZ_CP040780.1\|WP_047678478.1\|2620328_2620790_-\|universal-stress-protein	gnl\|CDD\|238182	cd00293, USP_Like, Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.	5.2797e-16
NZ_CP040780.1\|WP_047677468.1\|2618941_2619673_-\|DNA/RNA-nuclease-SfsA	gnl\|CDD\|224406	COG1489, SfsA, DNA-binding protein, stimulates sugar fermentation [General function prediction only].	1.31008e-57
NZ_CP040780.1\|WP_139041940.1\|2627501_2629034_-\|flotillin-family-protein	gnl\|CDD\|259798	cd03399, SPFH_flotillin, Flotillin or reggie family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. The flotillin (reggie) like proteins are lipid raft-associated. Individual proteins of this SPFH family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. In addition, microdomains formed from flotillin proteins may be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and interact with a variety of proteins. They may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and in cancer invasion, and metastasis.	8.07751e-63
NZ_CP040780.1\|WP_005684724.1\|2616521_2617373_-\|proline/glycine-betaine-ABC-transporter-permease	gnl\|CDD\|226644	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism].	1.52132e-121
NZ_CP040780.1\|WP_005684728.1\|2612160_2612862_-\|class-A-sortase	gnl\|CDD\|320680	cd06165, Sortase_A, Sortase domain found in class A sortases. Class A sortases are membrane-bound cysteine transpeptidases distributed in Gram-positive bacteria (mainly present in Firmicutes). They perform a housekeeping role in the cell as members of this group are capable of anchoring a large number of functionally distinct surface proteins containing a cell wall sorting signal to an amino group located on the bacterial cell wall. They do so by catalyzing a transpeptidation reaction in which the surface protein substrate is cleaved at a conserved cell wall-sorting signal (Class A sortases recognize a canonical LPXTG motif, X can be any amino acid), and covalently linked to peptidoglycan for display on the bacterial surface. The prototypical sortase A protein from Staphylococcus aureus (named Sa-SrtA) cleaves the amide bond between threonine and glycine residues of the canonical LPXTG motif in a wide range of protein substrates with diverse functions that can promote bacterial adhesion, nutrient acquisition, host cell invasion, and immune evasion. Next, it catalyzes a transpeptidation reaction by which the proteins are covalently linked to the peptidoglycan precursor lipid II. SrtA is therefore affects the ability of a pathogen to establish successful infection. SrtA contains an N-terminal hydrophobic segment, a linker region and an extra-cellular C-terminal catalytic domain. The hydrophobic segment functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring. The catalytic domain contains the catalytic TLXTC signature sequence where X is usually a valine, isoleucine or a threonine. The gene encoding SrtA is generally not located in the same gene cluster as its substrates while the gene encoding SrtB is usually clustered in the same locus as its substrate.	6.69867e-67
NZ_CP040780.1\|WP_047678485.1\|2624845_2626045_+\|homoserine-dehydrogenase	gnl\|CDD\|235783	PRK06349, PRK06349, homoserine dehydrogenase; Provisional.	1.42379e-99
NZ_CP040780.1\|WP_047678488.1\|2626041_2627388_+\|aspartate-kinase	gnl\|CDD\|236364	PRK09034, PRK09034, aspartate kinase; Reviewed.	0
NZ_CP040780.1\|WP_047678491.1\|2629659_2630703_-\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|379113	pfam13303, PTS_EIIC_2, Phosphotransferase system, EIIC. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.	4.84817e-82
NZ_CP040780.1\|WP_029943740.1\|2613661_2615422_-\|pyruvate-oxidase	gnl\|CDD\|213733	TIGR02720, Pyruvate_oxidase, pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name. [Energy metabolism, Aerobic].	0

>NZ_CP040780.1|WP_080751282.1|2619828_2619984_+|alpha-galactosidase
MFWFTPITRSPAQKSACKDLGRNGQSPAITPKAAYVLVYAHNALPGAEVCV
>NZ_CP040780.1|WP_047677468.1|2618941_2619673_-|DNA/RNA-nuclease-SfsA
MQYQNVSVGQLIRRVSRFTVEIAIDGVTTSVHMNNTGRNKEILVPGSLASVRYVDHPNRKTHYDLLAVKRQNRWINIDSLAPNHVARECLEAGTMKLPGLSLPYAVRPETTWRDSRLDFAGTAADGQSWFVETKGVTLANQTLAAFPDAPTTRALKHVHTLTMAQAEGYQAFLVFIVQLPNIQQMTIYRERFPELVTAITTAKQNGVRVLAYDTMTGPDFITLGQPILFDEHLPFTEMNLTSL
>NZ_CP040780.1|WP_005713097.1|2617365_2618589_-|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein
MQHKIENDAETKIEVSGLTKIFGKRINRAKEMLKQGKTKAEILKATGATVGVDQADFTIKKGEIFVIMGLSGSGKSTTLRMLNRLIEPTAGQVLIDGDDIAKLDKQHLREVRRQKLSMVFQGFALLPNRTVLQNAAFGLEIQGMDKSEREAKANKALDLVGLDGFADQFPDQLSGGMQQRVGLARALASDAEILLMDEAFSALDPLNRRDMQDELLDLQEEMHKTIVFISHDLNEALRIGDHIMIMKDGEIVQIGTPEEILSQPADDYVEKFIEGVDRSQVYTAANVMIRANTVNIDKDGPRLAARRMRDNEISSLYVVNTKRQLVGILDADDVRAAIDSGKKDLTTIVKTDVPTTKMDTPLADLLDAVSTTSVPYAVIDDQKRLRGIIIRGAVLGALSGQEVNVNV
>NZ_CP040780.1|WP_005684724.1|2616521_2617373_-|proline/glycine-betaine-ABC-transporter-permease
MFNLLVTIPTLPLAHWIDSFVDWLTQFAGFFGVLTNFIGTIVNAFQAVFDFIPIWLFIILIMALTWYLKRGQKYRSLLIFELVGLLLIWNLGFWRDMTQTLTLVLTASLLAIVIGIPLGIWAAESKTVSAIVKPLMDFMQTMPAFVYLIPAVAFFGIGMVPGVVASVIFAMPPTVRMTQLGIEQVPADLNEAAVAFGATSWQQLIKVQLPFARGTIMAGINQSMMLALSMVVIASMIGAMGLGTKVYFAVGRNDAGGGFVAGLAIVILAIILDRITQSLNRTR
>NZ_CP040780.1|WP_014569933.1|2615607_2616510_-|glycine/betaine-ABC-transporter
MTFYKKIIAALAMVATVGFLTACSSTQPKYDAKKPLGPQINYTITGIDAGAGIMSSTDKALKAYGLEEKNWQLQPSSTAAMTSTLQKAIADKRPIVVTGWTPHWMFTKFPLKFLKDPKNVYGKAEQIHTIVRKGLKQDAPQAYQVLDQFHWTPKEISSVMLAVNNGQDPAAAAKAYVKKHPEQIAQWTKGVSHVSGSPKLTLTYIAWDSEIASTNVVATVLRQMGYKVTIRAMEPQPVWASVATKAADAQVSAWLPNTAAKLYADYKNQVVDLGVNMDGARVGLAVPKYMKNINSIEDLK
>NZ_CP040780.1|WP_029943740.1|2613661_2615422_-|pyruvate-oxidase
MVETIKAGVAALQTLESWGVTHIYGIPGGTFNNMMYALHEEKSRIKYIHVRHEEVGALAAVADGKLTGHIGVAFGSAGPGATHLFQGAYDAKMDKVPTLFLVGQVEQRFMNADFFQELDEDPMFQDAAVYARTVTTAQSLPHVIDEAIRRAYAAHGAAIVVIPNDLAAELIPANGYYSAAATHATPILAAGTDEQVDQALRLIRTASRPVMYVGQGVRGAADTVMTLAKKLQMPVITTALGKPIIPYAFEALLGSAARVASKPANEALRVADLIMFVGSNYPFAEVMFSPKAKFIQIEADPKTLGKRHHTDVAILADAPATLKKMIAHSDEAPSSGWYQANVDNVKNWHQYNDDMMQRTTGDMRFEPVFGQINRIATDDAIFAIDVGDVTQNAVRLLKVNGRQAWTTSGLFATMGAGLPAALAGQLSFPQRQVFNLAGDGAAAMVMQDLDTEVRYHLPIINVVFSNNALGYIEDEQEDDGHEWFGVDMPAIDFATVAKGMGMTGLTVTKVSELAAAFDEAEANRIAGKPTLIDAKITNERPIPVEHLQLDPDRFDAATIAAFKKRYYADNLVPFSSFLAAHHVSVG
>NZ_CP040780.1|WP_005692619.1|2613159_2613570_+|GtrA-family-protein
MKTLIHLYKRYEMIINYLFIGGLTTLINFVTFFVMRYFDIGLVLTNTTANIVSVIFAFFANKSVVFHSDYSSKKKFWFELTSFLILRGVSLLLDNFIMIVGVDWLHGNEILVKILDQIIIVVANYLFSKLIFVRKR
>NZ_CP040780.1|WP_005684728.1|2612160_2612862_-|class-A-sortase
MTKSGKQQSPRKHRWLWRTIFALGVLLGLALVFNEPIKLFVVDHLSQWTMGQIDRNTVDKNEKRSATFDFKGVKALDINTVGNAALTRNLHPIGKIAITSVHLKLPILKGLSNDNLSAGAGTMKADQKMGEGNYALAGHYMTNQGILFSPLKNVQTGDTVAITNMKKVYTYKVTTKQIVNETQVQWIDDVAGKKLITLVTCASPTEGEVDRIIVQGELQSVKKANQKNLKIFL
>NZ_CP040780.1|WP_005714699.1|2610993_2612070_-|AI-2E-family-transporter
MSAYEKFINNVPVRRTVVLFSVFLVLWFARSIMSDILLTFIFAFLVSRLVHAVQRHVHVRPFVIVVPVYILVILGLIYAAVHYVPAIIHQTITLFNSVQDFYNSDAFANNQVMQWVLQSTKSLNLTEQLKTGLSTVLEYAGNIGAMGLTLVLSFILSFFFTIELDSLPAFGQLFLDSPFGWYFKDLRYFALKFINTFGVVMEAQIFIAVVNTVITTITLLFMKMPNIPSLAIMVFLLSLIPVAGAIISLIPLTIIGYTVGGWQDVITILIMIAAIHVLEAYVLNPKFMSSRTQLPVFFTFVVLLVAERLFGTWGLIVGIPIFTFFLDVLGVKKIAGTKAHHSTYDTVPQPKEHHENDA
>NZ_CP040780.1|WP_047677473.1|2609906_2611004_-|serine-hydrolase
MTRKRRWLIILAVLGVLVVAGGVTMGWIQHQRQASKITARPVPQAQLRRHVRKLIDATDFRGSVALIKKGRIVYTGGVGEADHTRKLANNGATMFPLASVEKYLTALVIGRLIADHQLSFTTKLAKFYPDIDHSRDITIRQLLDHRSGIQMDELTPEQILTSEKNALDWNLNQLGSTGDHSFIYTNANYALLAGIIRKVTKKPFAAALDQTILAPLKLTHTRNFDALSAKMPVAQGYLSEDDQSYQPDDLSQALLSSLLGSGSVYMSVTDLAKVIIAAETGKIIPKKVYHQLIAAHYADSNQYASGVAWLDDQRLLQGMYNDNPESFSTLAYFRANATSGVVLFGNHTMTTDTVTLAQNLEALVE
>NZ_CP040780.1|WP_047678478.1|2620328_2620790_-|universal-stress-protein
MVTENDLTIESVHYNRLLLAVDDDDDDSSRKALNYACTVAKIYDIPLGIVSVLETGDLNIFQSLTPDDVEAAREKMAKNLNTYVEKARAFGVQKAQPIVAEGRPAAALLDEVIPAFKPDLVIMGSHVRRGRLRLGHVASEVARDAAVSVIIVR
>NZ_CP040780.1|WP_005713106.1|2620838_2622098_-|hypothetical-protein
MKDTPSFIPILLGSDMNVYGMARSFHEMIGGAIDVYAREQLAPTRFSRIVNVHLIKQFDSDPTFIEKMREVAHLHAASAGRLLLIACGDTYAQLVSKHKDELSQWFICPYVDYDLLKRLNSKESFYQVCEEYHLPYPATKIVTKSMYESNATITAPFEFPVALKPTDSVEWLNIHFEGRKKAFTIHSQVELTNTIAKIYDNGYTSDLILQDFVPGDDSNMRTLNCYVDQYHHVKMMCLGHPLLEDPTPASIGNYVAIMPAFDQTLYDQIKEFLEAIKFTGFANFDMKYDHRDNTFKLFEINIRQGRSSFFVTLNGYNLASWPVRDYITGDLKDAPTVYGNSDRSKYKLWLGVPERVFKQYSADNEAKREALKLIKEKRYGTTVFYKPDMTLKRWLLLKYMFHNYVGRFKQYFAENKGDV
>NZ_CP040780.1|WP_005713108.1|2622379_2623258_-|homoserine-kinase
MISVSVPATSANLGVGYDVLGLALDLKARFTFETSTQKLEIVGDDPDFANEQNLIYQAFAIFAKAVHQPVPNLRITVDSDIPSSRGLGSSATCVVGGIAAANAWFHAGWDRTRLLKLAAKMEGHPDNAAPAIFGQLCATILADAEPIVRQYPVSSQLQLVTFIPDYAVSTAEARKILPTTMTYVDAAYQMGRCVLMTRALADGDLPLLHQVAHDRMQEPYRATLIPDYQAVRQLVTAANGVLLISGSGSTMLAIVEGAAAARQLQAAASHQWPAWRVQVVQPSMEGVRVSES
>NZ_CP040780.1|WP_047678481.1|2623223_2624738_-|threonine-synthase
MRYTSTRDQRVSKTGQQAIKQGISEEGGLFVLPHLTDYRLNLQNLLGKDYETIAQNVLTTLLPDFNTAALKKAIQFAYHKNFSDRRLTPVRSVGDFHVLELFHGPTSAFKDLGLQLLPQLMRLALDPEDRIMILAATSGDTGTAALQGFKNVAQTGITVFYPDHGVSPIQERQMLTTTGNNTRVFPIGGNFDQAQSAVKDLFTDTGFAARLQAEQVTLSAANSINIGRLIPQVVYYFSAYLQLVESGAIELGQKVNFTVPTGNFGDVLAGFYAKLMGLPIHQLIAAANANHELADFLETGIYDRNRPFLKTVAPSMDIQISSNLERLLYYKSGEDSSYVAKLMEELATTGRYQVRPDVLAAIQADFAGGFAADAQIAASIAAVWKQNGYLLDPHTAVGYHVMQQYRETTGDSTPNVLLATASPYKFPRAVAQALDLPVTGDDFAVMTQLHQMSGVPIPANLARLATLTAQPKHVVAPDKMGQAIIAAAKEVFNDDQRVRSGNQR
>NZ_CP040780.1|WP_047678485.1|2624845_2626045_+|homoserine-dehydrogenase
MNIAILGFGTVGSGVYDIVENGDRRMRVTAIFIRPTHPATMPEMTTNFDAILADPNIDVVVEAIGGLHPAYDYILRALQHGKHVVTANKAVVAQHLPEFITTAAQHHVRFYFEATTGGGIPWIRNLERAARIDQIDTIEGIFNGTSNYILDQMQRAHLDFDPVLLAAKDMGYAEADPSADIDGDDVVNKLKISAALAYDMVPPRDVPKFGIRNVTKADIDFFASRHQVLRLIGKSRRVGNHYSMVVEPRLYPATALAANTFENFNLIRLHGQTIGDLQFYGQGAGKYPTANAIVQDLFDILENAPHLTRHFDQNLQFDADLNTADYLLRADPLTFAMFNDKDTEVVRDHLLIKQIPTGEMHRLMRGVLAIDAHAFMAAIGDSELTTRNVKEQVDQGVIE
>NZ_CP040780.1|WP_047678488.1|2626041_2627388_+|aspartate-kinase
MKVVKFGGSSVADAGQFQKVKAIINQDPQRQIVVISAAGKYGDATRKLTDTLYLIADGFEAGRDVTPLFAQVTARLEAINQVLHLHVPLIKLMNTIRHHIATHYSRDYLVSRGEFLTAHLMAAYLGYTFVDAADLLFFDQNGTIDEAKTLAAYRRLPRHHGIVVPGFYGQNAAGHVQIMARGGSDISGAWLARLAQADLYENWTDVSGIKMADPRIIQDADSIDVMSYDELRELTYMGFSVFQEEAVQPVRESGIPTRILNTNVPEDPGTLIIQDDDPANDMRIITGIAGRKHYLVVTIRQYQLALHLDIIQHALDVIADHHLVVDYLPTGIDSFSLLIREPRHQISVHELTAAIKAACQPDKLEVTENVALIAMVSRKLRQRPAIAGKVLAYLDDNLLNVQLVSQTNDDINLLIGVNDKDYDKAIRVIYSSIHQNFHRPAPYIEGIA
>NZ_CP040780.1|WP_139041940.1|2627501_2629034_-|flotillin-family-protein
MEILTDYMPWIIAAVLLILLFIFLATHRKTALPNEVLIISGALISGKHSFRDVNGNRVKLITNGGSFILPILQRWDVLSLNTRTIEVATPEVYTQQGVPIIVNGTVILKIGSSQEEVATAAEQFLGKNDEQINSEATEILEGHLRAILGTLTIEDTYQNRDAFAEKVQDVASSDLAKMGLQIISFTIKDIADKNGYLDSLGKKQIAEVKKNAAVAEAAANRDTRIQQAQADQEAKQQEIERQTQIADAEREQQVKMADFKKQQEIAQAQADQAAIVEQMKAKQVQKEKDIELAQKNAELQEQELNATVRKQADADLYKAQRAAEAQKATQIAAAEASAKEVELDAEAKANATKAIGEAEAGKTKAIGLAQAEAIAKQAEAARQLDESGRFKMTIEAMPKIIEAAMSPYANVDSIKLYGDGDLTNQTSGSLVKQLDMLQEVAGIDIRGMLNGALMHQAGNQPVVDAIKHHEQPAAKAPDTKQPAPAPKSDQPATTEQAASSTPSRMAEKQK
>NZ_CP040780.1|WP_014569940.1|2629017_2629431_-|hypothetical-protein
MLAWWAQQELWLQMIVGVVALLIIGGLLWMLLSLVLLPLLALLQRLLSPVENTTSMSDRDYLLGTLTLDVAHHHTGEVMVTGGGRARQTYPAKLWSDKSQPLDQGTKVVIIELKQGIAYVDALATHNPKEGTDGNFN
>NZ_CP040780.1|WP_047678491.1|2629659_2630703_-|PTS-sugar-transporter-subunit-IIC
MKQDVKTVTMNILNGLSVGIIVALVPGAILNALVKLLLPSFPQLAVVTYMTTAAMTLLPALSAVCVGMLAKFTPIQTSSLALAAIIGAGNYHLTKTSLSVAGTGDVINLAITLAIGYLVILLLGNALKAYTILLIPSLVLLIAGGVGMLTLKPVSGITKYIGVVVHDITELQPIAMGVLMGIIFAILIVTPISTVGIATAIMLNGIGAGSANLGIVGASFALAAYGWKANPLGTSLAHFLGSPKMQMANILSKPKLFLPMALNAGILGGIGAALQIQGTPASAGFGFSGLVGPLAALDAMKAVTVGNVLELTVIFFILPIGLAYLSNLLFTKTLHYQVSEDYALHYD
>NZ_CP040780.1|WP_047678494.1|2630716_2631709_-|D-2-hydroxyacid-dehydrogenase
MKKILMYSVRPDEQPAIDDWVAANDLQVDTNTVAFNGDTVDLAKGYDGVVIQQHGAIPEPLVYQKLKSFGMKQLTLRITGYDIVNLDAATANGLAVTNVPAYSPRSVAELVLAHAMRLIRHLGEATAREAKDDYSWGGLEAQEVHQLTIGIIGAGKIGSTVARIFRALGSTVIVADPVTRPELADTVRYVDLDTLLATADIVTVHTPLDDITTHMLDAATFKKMKKTAYLINAARGPIVDTTALIEALQRGEIAGAALDTIEGEAGIFGVDRSQSGVDNTNLETLKALPNVEISPHIGFYTDAAVKNMIDISLDDVKTILVGGHSPHQVN

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Crispr_ID: NZ_CP040780_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040780_7

2663406-2664959

TypeII

Consensus_repeat	Method
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CRISPRCasFinder
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CRT
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	PILER-CR

23 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_CP040780_7

>merge|NZ_CP040780|7|2663406-2664959|CRISPRCasFinder,CRT,PILER-CR
TCACTGAAGGTTTTTGATCTGACATCTACCTAAGACAAATAACCAAATCAATAAAGCTATTCTAAGGTTCTTGAACTGATTGATCTGACATCTACCTGAGACAACAGTAATTGTTGCACCCAGTCGCTGGCCGTTCTTGAACTGATTGATCTGACATCTACCTGAGACGGATTGTCAAGCCGGACGGCAAAACCATCAGTTCTTGAACTGATTGATCTGACATCTACCTGAGACCGCAATAAGCACAACGAGATCCGCCAAGTCGTTCTTGAACTGATTGATCTGACATCTACCTGAGACCCGTCAAGTAACACGGGGGTACAAAATACAGTTCTTGAACTGATTGATCTGACATCTACCTGAGACGGCAATTTTTGTCTGGCCTATTCAATTGGCGTTCTTGAACTGATTGATCTGACATCTACCTGAGACAACTCAGAGCGACGAAACAACTTAAACGACGTTCTTGAACTGATTGATCTGACATCTACCTGAGACTGAACCCAGTGGTGATTGGCGCAATAATCGGTTCTTGAACTGATTGATCTGACATCTACCTGAGACCGCCGTCAAGTTCTTCTGTTTCTTCATCGTGTTCTTGAACTGATTGATCTGACATCTACCTGAGACAACTCAGAGCGACGAAACAACTTAAACGACGTTCTTGAACTGATTGATCTGACATCTACCTGAGACCCTTCTGGTTGTCGGTGTCATCACCAGCATGTTCTTGAACTGATTGATCTGACATCTACCTGAGACTTTTTAGGTGCCACTTTTCCGTGGGAGACAGTTCTTGAACTGATTGATCTGACATCTACCTGAGACTATTAAGTGGTCAGATATTAAGTTGGACACGTTCTTGAACTGATTGATCTGACATCTGCCTGAGACCCCTGCCGTTGGGTCATGCTTGTAGCCAAAGTTCTTGAACTGATTGATCTGACATCTACCTGAGACAGCCAGGTCATCGACACATTGACATTTTTGGTTCTTGAACTGATTGATCTGACATCTACCTGAGACTAAATCAATGGGCTTAACGCCCCATAACCCGTTCTTGAACTGATTGATCTGACATCTACCTGAGACGCAAAAGCATCTCCAACAATTTGCCAGCCAGTTCTTGAACTGATTGATCTGACATCTACCTGAGACTCAGCCCACGCCCGGGATTTTGCGAATCAGGTTCTTGAACTGATTGATCTGACATCTACCTGAGACACCCCTTTATATTCAAGAGTATCAACAGTTGTTCTTGAACTGATTGATCTGACATCTACCTGAGACGTCTTGCATACCCTGAATAACACTATTCAAGTTCTTGAACTGATTGATCTGACATCTACCTGAGACAAACAAATTTATATCCAAATCAATTGAAACGTTCTTGAACTGATTGATCTGACATCTACCTGAGACGCAATCGCCTGCAGCCAACTCATCGACACAGTTCTTGAACTGATTGATCTGACATCTACCTGAGACAGACGTTTTGGGTCAATCTGGGGTAATTGTGTTCTTGAACTGATTGATCTGACATCTACCTGAGAC

>NZ_CP040780|7|7|2663406-2664959|CRISPRCasFinder
TCACTGAAGGTTTTTGATCTGACATCTACCTAAGAC	AAATAACCAAATCAATAAAGCTATTCTAAG
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AACAGTAATTGTTGCACCCAGTCGCTGGCC
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GGATTGTCAAGCCGGACGGCAAAACCATCA
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CGCAATAAGCACAACGAGATCCGCCAAGTC
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CCGTCAAGTAACACGGGGGTACAAAATACA
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GGCAATTTTTGTCTGGCCTATTCAATTGGC
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AACTCAGAGCGACGAAACAACTTAAACGAC
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TGAACCCAGTGGTGATTGGCGCAATAATCG
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CGCCGTCAAGTTCTTCTGTTTCTTCATCGT
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AACTCAGAGCGACGAAACAACTTAAACGAC
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CCTTCTGGTTGTCGGTGTCATCACCAGCAT
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TTTTTAGGTGCCACTTTTCCGTGGGAGACA
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TATTAAGTGGTCAGATATTAAGTTGGACAC
GTTCTTGAACTGATTGATCTGACATCTGCCTGAGAC	CCCTGCCGTTGGGTCATGCTTGTAGCCAAA
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AGCCAGGTCATCGACACATTGACATTTTTG
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TAAATCAATGGGCTTAACGCCCCATAACCC
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GCAAAAGCATCTCCAACAATTTGCCAGCCA
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TCAGCCCACGCCCGGGATTTTGCGAATCAG
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	ACCCCTTTATATTCAAGAGTATCAACAGTT
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GTCTTGCATACCCTGAATAACACTATTCAA
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AAACAAATTTATATCCAAATCAATTGAAAC
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GCAATCGCCTGCAGCCAACTCATCGACACA
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AGACGTTTTGGGTCAATCTGGGGTAATTGT
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC

>NZ_CP040780|7|1|2663406-2664959|CRT
TCACTGAAGGTTTTTGATCTGACATCTACCTAAGAC	AAATAACCAAATCAATAAAGCTATTCTAAG
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AACAGTAATTGTTGCACCCAGTCGCTGGCC
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GGATTGTCAAGCCGGACGGCAAAACCATCA
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CGCAATAAGCACAACGAGATCCGCCAAGTC
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CCGTCAAGTAACACGGGGGTACAAAATACA
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GGCAATTTTTGTCTGGCCTATTCAATTGGC
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AACTCAGAGCGACGAAACAACTTAAACGAC
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TGAACCCAGTGGTGATTGGCGCAATAATCG
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CGCCGTCAAGTTCTTCTGTTTCTTCATCGT
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AACTCAGAGCGACGAAACAACTTAAACGAC
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CCTTCTGGTTGTCGGTGTCATCACCAGCAT
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TTTTTAGGTGCCACTTTTCCGTGGGAGACA
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TATTAAGTGGTCAGATATTAAGTTGGACAC
GTTCTTGAACTGATTGATCTGACATCTGCCTGAGAC	CCCTGCCGTTGGGTCATGCTTGTAGCCAAA
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AGCCAGGTCATCGACACATTGACATTTTTG
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TAAATCAATGGGCTTAACGCCCCATAACCC
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GCAAAAGCATCTCCAACAATTTGCCAGCCA
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TCAGCCCACGCCCGGGATTTTGCGAATCAG
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	ACCCCTTTATATTCAAGAGTATCAACAGTT
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GTCTTGCATACCCTGAATAACACTATTCAA
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AAACAAATTTATATCCAAATCAATTGAAAC
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GCAATCGCCTGCAGCCAACTCATCGACACA
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AGACGTTTTGGGTCAATCTGGGGTAATTGT
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC

>NZ_CP040780|7|1|2663538-2664959|PILER-CR
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GGATTGTCAAGCCGGACGGCAAAACCATCA
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CGCAATAAGCACAACGAGATCCGCCAAGTC
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CCGTCAAGTAACACGGGGGTACAAAATACA
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GGCAATTTTTGTCTGGCCTATTCAATTGGC
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AACTCAGAGCGACGAAACAACTTAAACGAC
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TGAACCCAGTGGTGATTGGCGCAATAATCG
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CGCCGTCAAGTTCTTCTGTTTCTTCATCGT
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AACTCAGAGCGACGAAACAACTTAAACGAC
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	CCTTCTGGTTGTCGGTGTCATCACCAGCAT
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TTTTTAGGTGCCACTTTTCCGTGGGAGACA
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TATTAAGTGGTCAGATATTAAGTTGGACAC
GTTCTTGAACTGATTGATCTGACATCTGCCTGAGAC	CCCTGCCGTTGGGTCATGCTTGTAGCCAAA
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AGCCAGGTCATCGACACATTGACATTTTTG
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TAAATCAATGGGCTTAACGCCCCATAACCC
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GCAAAAGCATCTCCAACAATTTGCCAGCCA
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	TCAGCCCACGCCCGGGATTTTGCGAATCAG
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	ACCCCTTTATATTCAAGAGTATCAACAGTT
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GTCTTGCATACCCTGAATAACACTATTCAA
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AAACAAATTTATATCCAAATCAATTGAAAC
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	GCAATCGCCTGCAGCCAACTCATCGACACA
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC	AGACGTTTTGGGTCAATCTGGGGTAATTGT
GTTCTTGAACTGATTGATCTGACATCTACCTGAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040780.1\|WP_047676371.1\|2677532_2678837_-\|pyrimidine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|274244
NZ_CP040780.1\|WP_049170300.1\|2651425_2652211_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|181585
NZ_CP040780.1\|WP_047676360.1\|2664979_2665660_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd12218_csn2_CAS-II-A	gnl\|CDD\|213411
NZ_CP040780.1\|WP_047678832.1\|2661558_2662659_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040780.1\|WP_047678435.1\|2650715_2651360_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379133
NZ_CP040780.1\|WP_047678438.1\|2652671_2654120_-\|family-1-glycosylhydrolase	unknown	unknown	gnl\|CDD\|236580
NZ_CP040780.1\|WP_047676373.1\|2678935_2679955_+\|adenosine-deaminase	unknown	unknown	gnl\|CDD\|238645
NZ_CP040780.1\|WP_005692544.1\|2656422_2657295_-\|PRD-domain-containing-protein	unknown	unknown	gnl\|CDD\|170086
NZ_CP040780.1\|WP_005692541.1\|2660947_2661373_-\|NusG-domain-II-containing-protein	unknown	unknown	gnl\|CDD\|227646
NZ_CP040780.1\|WP_049171616.1\|2662868_2663357_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP040780.1\|WP_047678450.1\|2659041_2660736_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|227321
NZ_CP040780.1\|WP_047676368.1\|2671419_2673147_-\|thiol-reductant-ABC-exporter-subunit-CydC	unknown	unknown	gnl\|CDD\|227320
NZ_CP040780.1\|WP_047676364.1\|2665939_2666845_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP040780.1\|WP_047676362.1\|2665656_2665962_-\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
NZ_CP040780.1\|WP_047676366.1\|2667044_2671142_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
NZ_CP040780.1\|WP_047678441.1\|2654138_2655974_-\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273919
NZ_CP040780.1\|WP_047678444.1\|2657426_2659049_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP040780.1\|WP_005684671.1\|2674866_2675880_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|376764
NZ_CP040780.1\|WP_139041941.1\|2673127_2674870_-\|thiol-reductant-ABC-exporter-subunit-CydD	unknown	unknown	gnl\|CDD\|227321
NZ_CP040780.1\|WP_029607524.1\|2675876_2677301_-\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587

Protein	Function_ID	Function_description	E-value
NZ_CP040780.1\|WP_047676373.1\|2678935_2679955_+\|adenosine-deaminase	gnl\|CDD\|238645	cd01320, ADA, Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.	1.77387e-117
NZ_CP040780.1\|WP_049171616.1\|2662868_2663357_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.49393e-07
NZ_CP040780.1\|WP_049170300.1\|2651425_2652211_-\|SDR-family-oxidoreductase	gnl\|CDD\|181585	PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional.	2.70393e-172
NZ_CP040780.1\|WP_047676360.1\|2664979_2665660_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213411	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	6.3075e-69
NZ_CP040780.1\|WP_047678435.1\|2650715_2651360_+\|hypothetical-protein	gnl\|CDD\|379133	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	0.000270603
NZ_CP040780.1\|WP_047678438.1\|2652671_2654120_-\|family-1-glycosylhydrolase	gnl\|CDD\|236580	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed.	0
NZ_CP040780.1\|WP_047676371.1\|2677532_2678837_-\|pyrimidine-nucleoside-phosphorylase	gnl\|CDD\|274244	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NZ_CP040780.1\|WP_005692544.1\|2656422_2657295_-\|PRD-domain-containing-protein	gnl\|CDD\|170086	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional.	4.54689e-43
NZ_CP040780.1\|WP_005692541.1\|2660947_2661373_-\|NusG-domain-II-containing-protein	gnl\|CDD\|227646	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown].	5.71913e-35
NZ_CP040780.1\|WP_047678444.1\|2657426_2659049_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.03368e-96
NZ_CP040780.1\|WP_047678450.1\|2659041_2660736_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|227321	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	3.00718e-88
NZ_CP040780.1\|WP_047676368.1\|2671419_2673147_-\|thiol-reductant-ABC-exporter-subunit-CydC	gnl\|CDD\|227320	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	1.72537e-161
NZ_CP040780.1\|WP_047676364.1\|2665939_2666845_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	1.80186e-93
NZ_CP040780.1\|WP_047676362.1\|2665656_2665962_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.71888e-22
NZ_CP040780.1\|WP_047676366.1\|2667044_2671142_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	1.67263e-122
NZ_CP040780.1\|WP_047678441.1\|2654138_2655974_-\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273919	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.	0
NZ_CP040780.1\|WP_005684671.1\|2674866_2675880_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|376764	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II. This family consists of cytochrome bd type terminal oxidases that catalyze quinol-dependent, Na+-independent oxygen uptake. Members of this family are integral membrane proteins and contain a protohaem IX centre B558. One member of the family, Klebsiella pneumoniae CydB, is implicated in having an important role in micro-aerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae. The family forms an integral functional unit with subunit I, family Bac_Ubq_Cox, pfam01654.	2.7959e-90
NZ_CP040780.1\|WP_139041941.1\|2673127_2674870_-\|thiol-reductant-ABC-exporter-subunit-CydD	gnl\|CDD\|227321	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	0
NZ_CP040780.1\|WP_029607524.1\|2675876_2677301_-\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	0

>NZ_CP040780.1|WP_049171616.1|2662868_2663357_-|GNAT-family-N-acetyltransferase
MSKAKLILSPAFYTDLKEIRHMYQQAFKSLYGKYQDRETNPYCESLESLQKKFKRPNNAFFFIIVKDKHIGLIRVVTDRKNSAARISPFLILPSYQGKGYAQLGLQLIEEQFPLIQTWYVDTIAEEPKLVHLYRKVGFQQLPDRETTINEHMHIIYFVKVRS
>NZ_CP040780.1|WP_047678832.1|2661558_2662659_-|hypothetical-protein
MKKVAIIGATLLLSVGLVACSGGSGSSSSKSSSTTSQTSNAKVKIKTGADANAKVPAAGTLVMRQLYAAPHGKQSFAAVNVTLNGDTIVSARINEFQYVKKSSEWTGVPNSNKDFGKNYPSGQILIAKAENSKPYSALMKKEAKATHTWEENETAITNFVKGKKISDLKAAVAEVKGTKKVSDVVSGATFADTAGYLQAIYDAATTGMVAEGIQTTDTNLTEGQVLAAPHGTQSFGIVTVAMQGDKIANVFLDEFQYMPAKDFGAVPNSNTDFGKGIKAGTVLASKRANSDAYSAIMKSKGKATKTWQENSTAIDEFAKGKTVAEIETAVSDLKGKKKASDVVSGATFTDTAGYLAAIIKAAKAAK
>NZ_CP040780.1|WP_005692541.1|2660947_2661373_-|NusG-domain-II-containing-protein
MRWLKRYVRPLDYVIVVLLFIACFIPAGIFSLTEANVNTSQKVAVISVNGQVKRRIKLGAHTRHQQFTLYPAKGQYNIIEVDGERIRDKEDNSPDQIAVHTGWISRIGQQSICLPHKLLIEIKPAQGNHGSNGDAGGLVHP
>NZ_CP040780.1|WP_047678450.1|2659041_2660736_-|ATP-binding-cassette-domain-containing-protein
MFGLLKYGRDQRWAGVIEALFDWLPTLLPILIALNLGTGHQVAALVTTLVLMAVWLGYVVGYERHHRHAWAMSAKRELRDRYFTALYQRNDAVATTAADHAVIQRDLGGLNNLDMFYSTLFPTILQAGMTFLVLIGLSFWYRSWLALLPFGCVLLIGIAMMFLGKRMSAQNKTHLSGFLKMGGRFMDDLRGMTTLVMYDAADRYAQKFADDSEFFRQATMNLLKTQLQTLFVINGFVYLTVFAGGFITAVQLVAGQLPVAGAFATWFTLAMMMVNARQLGYFVHVVKSNGPSLAAILATIAKAKEAPDTVKITDNRPLSQITLDQVSIGYTADAPLVTGVNATLVPGKLYGLAGENGTGKSTLIQAILGRLKPLSGAVMADQTAVSALSNVQQAAVFGYVTANEYLFSGTIQENLLLGNRFGDQWQARLASLGLMQFVPSLEKGYATQVGENGRLLSPGQRQQLAFARMLLADKTVYLLDEITSSIDEANAAVILQAVKKLSRHKIVLFISHDLKAMTQADEVWFIHDHQLTVANHQTLYQKQPAYRQLVDNPEMMENEVNSND
>NZ_CP040780.1|WP_047678444.1|2657426_2659049_-|ABC-transporter-ATP-binding-protein
MIRGLLRYTHHLTGAIFISFLIGMVAELAKVVVLVLAAMMLFDPQNAGQLLLPGLIAIILLGLGSFGEQYSGHYVAFHVLADLRGAVYRQLVKLAPAKLDTQASGKLLKLIGGDIEAMEIFYAHTLVPVAIGLVYGLLVVGIYSQLNWLAAIIALISYVAVGMVVPYARHRQLTAKTQAADRLKAANQQYLLESVRGMAVVRQLGIAKQRMTKGNEGFDQEATAFQQAQFSQLLKNVAGTVVIVGGWLLMIWLSGWPQPTTIQQALLAIFPLTFGPLLALNNLPGSLLNGFAAAKNLFKLLQEQPLNAALPNATQTVTTIDQIQVDHVGFSYPTRPETVLKDVTVTLNAGEIVGFVGASGSGKSTLAKLIMGWYPVSHGQILIDGNDLATIKPTALRNQMNYLPQTPVFFSESVRDNLTLHDPAITDQQIWTVLDQVKLRARLEQMSHGLDTVVAASHVPFSSGEQQRLELARALLHPSSVLVLDEPTSNLDTENERLILETIKTYYHGIVILISHRPESAAFADRVYRFSEHQVVLATE
>NZ_CP040780.1|WP_005692544.1|2656422_2657295_-|PRD-domain-containing-protein
MIIDAILNNNAVVVRRDKRDIIVVERGIGFHAKKGDQLTLQDSMKIYVPEDHAKLKIAMATIASLPDEYLTIAARIIQEAEVQLHTKFNSYLLIELADHIHFAVTRLHEQLILHNKLLWEIQIAYEPAFRMGEWALTEIANQIGEQLPEDEAGFIALKFVSNDLSQQHPVNSVAFTQMLANITKIIFYQLGLNMNAKTPEYQRLVIHLKFFLQRVYATSTAKTPVSPEPYDQALLAHLQQDYTQAYRCMEDVVKFMQQKLPGPISKNEQIYLTLHIARLAKSQGQSLKSS
>NZ_CP040780.1|WP_047678441.1|2654138_2655974_-|PTS-transporter-subunit-EIIC
MGETALAKQLLKLVGGKQNINQVWHCATRLRFTLKDQDKVPKEKVEALDGVITVVEASGQFQVVIGNNVSDVYQEVVKLEPSLSDGTEGPATVTHEKMTFKRAFNGLLTFISGVFTPFLGAMAGAGILKGLLSLAVVLGWLTTKSGAYQIWWAAADGIFYFLPLALAFTAAKQLKVNQFVAMAIAAAMVYPNIVALVGKPSIDFFGIPVVAANYTATVLPILLVVVVQKFLEPFFNKIWHESVRNILAPLCLLVVIVPLTMLVVGPVSSILSNGLATAIVSLNKSVPVLAGMILGGFWQVFVIFGVHWALVPVMMNNIALYGTDPMMPILLPAVLAQAGAAFAVFLKARDAKMKSLAGSSTITALFGITEPTIYGITLKLKKPFYCACVAGAVGGIIVAMSGAGANVASLASVLSLPTYLGKGFGVSVIGDVVAFVLGVGLTLAFGGINAPAKNQAAAEVVADHAETLAAPVKGTLVALSDVPDEVFASGTMGQGIAIEPEENVVKSPVAGTVSLVYPTGHAIGITSDKGAEILIHIGIDTVNLKGKHFKALIEQGQKVTVGTPLVEFDYQAIQAAGYAPTVMMIVTNSDQYQVETRSDGATDDDALMTLA
>NZ_CP040780.1|WP_047678438.1|2652671_2654120_-|family-1-glycosylhydrolase
MTNLKFPKQFMWGGATAANQLEGAYHEDGKGLSIADVLPQGKDRFAIVNQPDFDWTIDESKYRYPNHLGIDHYHHFKEDIKLFSEMGFKCYRFSIAWSRIFPEGDEQQPNLAGLAFYDALIAECLKYGIEPIVTISHYEMPLHLVTKYGGWKNKKLITFYKRFAETVLTRYFKQVKYWMTFNEINSAFSFPVMSQGLVASNGADDKRNIFQAWHNQFVASAWAVKMGHELDPQLQIGCMLLYATTYSYDANPVNQLATLQQNQAFNFFCGDVQVRGEYPAYTDAMMAEYGVKFQDLEFSAAELALLKHYPVDYIGFSYYMSAVIETTQEHHAEVGGNLLSGLKNPFLKASEWGWQIDPIGLRIALNQLYDRYRKPLFIVENGLGAIDRPDEKGEVHDDYRIDYLRQHIEQMGAAIHDGVELIGYTPWGCIDLVSASSGQMSKRYGFIYVDLDDDGEGTLARSKKKSFDWYRRVIASNGADLA
>NZ_CP040780.1|WP_049170300.1|2651425_2652211_-|SDR-family-oxidoreductase
MYRDLNGKVAVVTGGSKGIGAGIAERFGKEHMAVVINYLGDHEGARKTAATVIKNGGQAVSIHADVSTEAGIASLVKTAESEFGRLDVWVNNAGMEIKAPTHEVSLDDWNKVIAINQTGVFLGARAALNYFLDHHQPGNIINITSVHEQIPWPTFASYTAAKGAVKLFTETIAMEYANRRIRVNAIGPGAIETPINAEKFADKTQYDQTVAMIPQGRLGKPEDVAAGAAWLASTESSYVTGTTLFIDGGMTLYPAFKDGQG
>NZ_CP040780.1|WP_047678435.1|2650715_2651360_+|hypothetical-protein
MRDLVKLVGLDLAVFHTNSKKYFWFGTLISIVLLLLPFLNGDLATPLAGGITGLSIGLLMMPFVGVDRQGMENLYTMLPVRRTTIVAGHYLFGLMTVGLIDACSMLIIGLGWMARVNPIRDSQAFGWMLCFGTALMLFQIILSFPLMIGLGFKRAPLAAYFPLAILLIAVFLERSFQVDLDALKPWFGVIVAIFILAFIFSWWLSTVLYKKREF
>NZ_CP040780.1|WP_047676360.1|2664979_2665660_-|type-II-A-CRISPR-associated-protein-Csn2
MNLAYYPFQLITTKPSVITVIDTGLPKVLLDLVQAFRNDDDGIVLSNEQMQIQELRKASLWIGDPVLEMDLDKLFQRLIIKKVSQLIEDQRLIELIEQSQRLAMSLLREPLLSELPVTVEPGGKLEQIMKYCNVHFDEEVLTEPFSKVEAAIQTLAKLEEKRLVIFTNISHYLDVDSLNKLLDQVKDTSLELLLIEFSDVERGKFFEKCQYIYIDKDFMDNRELID
>NZ_CP040780.1|WP_047676362.1|2665656_2665962_-|CRISPR-associated-endonuclease-Cas2
MRLMIIFDLPVATSKDRRNYRRFRRALIDEGFLMIQYSVYVRVCKTKKSAAYMEQRIATVKPPTGTVQTLMVTEAQYQSMHFMVGTEKQDIRNSADRTVMI
>NZ_CP040780.1|WP_047676364.1|2665939_2666845_-|type-II-CRISPR-associated-endonuclease-Cas1
MGWRSFIISQHCKVTTKQHSLVVQTNGEVYTMPIDDLNQVIFTTTRALISADAIAALADANAKVIFSGRDGQPVTETKNLYSDRRRAEQVRLQVNWPLDLIETVWTKIVAAKINNQAQVAKLCGHDAQGLLDDLDALEINDVSNREASAARRYFKLMFGDDFSRSDICATNAALNYGYSVLLSTTNRAIVSTGHLTEVGLHHHSASNPYNLGSDLMEPFRPAVDYWVAQHRIKELTPDVKYGLIDLLNLEITFNGKKALLQNAVADHVENCLAFLDGKAKVCRIEVKFPDEVSSHAINDHI
>NZ_CP040780.1|WP_047676366.1|2667044_2671142_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MTKLNQPYGIGLDIGSNSIGFAVVDANSHLLRLKGETAIGARLFREGQSAADRRGSRTTRRRLSRTRWRLSFLRDFFAPHITKIDPDFFLRQKYSEISPKDKDRFKYEKRLFNDRTDAEFYEDYPSMYHLRLHLMTHTHKADPREIFLAIHHILKSRGHFLTPGAAKDFNTDKVDLEDIFPALTEAYAQVYPDLELTFDLAKADDFKAKLLDEQATPSDTQKALVKLLLSSDGEKEIVKKRKQVLTEFAKAITGLKTKFNLALGTEVDEADASNWQFSMGQLDDKWSNIETSMTDQGTEIFEQIQELYRARLLNGIVPAGMSLSQAKVADYGQHKEDLELFKTYLKKLNDHELAKTIRGLYDRYINGDDAKPFLREDFVKALTKEVTAHPNEVSEQLLNRMGQANFMLKQRTKANGAIPVQLQQRELDQIIANQSKYYDWLAKPNPVEKHRASKPYQLDELLTFRIPYYVGPLITPKQQAESGENVFAWMVRKNPSGNITPYNFDEKVDREASANTFIQRMKTTDTYLIDEDVLPKQSLLYQKYEVLNELNNVRINNEALSTDQKQRLIHEVFERHSSVTIKQVVDNLVAHGDFAQRPEIRGLADEKRFLSSLSTYHQLKEILHGAIDDSTKLHDIENIITWSTVFEDAAIFKTKLAEIDWLDPATIKKLSNIRYRGWGQFSRKLLDGLKLGNGHTVIQELMLSNHNLMQILADETLKETMTELNQDKLKTDDIEDVINDAYTSPSNKKALRQVLRVVEDIKHAANGQDPSWLYIETADGTGTAGKRTQSRQKQIQTVYANAAQELIDSAVRGELEDKIADKASFTDRLVLYFMQGGRDIYTGAPLNIDQLSHYDIDHILPQSLIKDDSLDNRVLVNATINREKNNVFASTLFASKMAATWRKWHEAGLISGRKLRNLMLRPDETDKFAHGFVARQLVETRQIIKLTEQIAAAQYPNTKIIAVKAGLSHQLREELDFPKNRDVNHYHHAFDAFLAARIGTYLLKRYPKLAPFFTYGEFAKVDVKKFREFNFIGALTHAKKNIIAKDTGEIVWDKERDIQELDRIYNFKRMLITHEVHFETADLFDQTIYAAKDSKERGGRMSLIPKKLGYLTGIYGGYQTERGSYVSIIRTFKKGETIYKVVNILTADVSLLSEKEKVSKTLADIYLKELIAKKLSKGKSGKNIASEPFEIVLPRVGKDSLFKNKKYGLFLIESATELHNYQELWLPRNDQLLIKRIQARQIEESKADYELTRMYRNIAWQVDHYFRLYKIRKFAEKLQASVEDFAGLPVYKNETSDGKVEVLASVLKRLNGAADKGRTNPTTVKLQSDFGRTLLTNGIVLEDDSSIVYQSPTGLFKRSVKLVDL
>NZ_CP040780.1|WP_047676368.1|2671419_2673147_-|thiol-reductant-ABC-exporter-subunit-CydC
MHWLKNEHWVRPDLKRYRWLLFWSLILGIMTFVFAGALMFTSGFLIDKSATKPLFAAIYVTVVLTRAFGVGRPVFQYAERLTSHNWVLRITSHMRRKLYKVLETDAAFVSEHHQTGDILGLLADDIGHIQNLYLRMIFPTVVGAGLTVIATLLLGWFNWGFALWILLLLLFQILILPWWGLVVERFRKAEQKQLNHDAYVSLTDSVLGLSDWVITHRDQDFMKQSLAAPKKLAASTAKSKRFQWGRDFIGQLLFALIAVSMLIWTNLEWTGNQSMANWVGAFVLVVFPLDQAFSGIAQGVGEWPTYRDAIRHLNDLHPVTRELPQQQPVPTTFNKIELNDVSFRYTPSDPELITNIDLTIQAGEKIAILGPSGMGKTTLLQLVLGDLTPTKGHVLIDGQDVLDYQNHRTNLFAVLDQSPFLFNTSIVNNVRLGNEDASDETVAAALKAVKLDQLVAQLPNGMNSSVEEAGFGFSGGERQRLSLARILLQDAPIVLLDEPTVGLDPITEQALLDTMFTVLKGKTILWVTHHLQGVSQTDRVIFLEDGRLTMNDSPQHLAEQNKRYQNLYALDAGLR
>NZ_CP040780.1|WP_139041941.1|2673127_2674870_-|thiol-reductant-ABC-exporter-subunit-CydD
MIDKTLLRLSGMRKTMTMLAGFALVQAFVILLQGKYLAEGIVHSWNRQSLAGLWLPLGLFAAAFTVRQLIVWVRNRIAAKFAMKSAAWLQAQLLRHLFALGPAAVAKEGTGNLVTMALDGIPEAENYIELILNKILIMSIIPWILVAYIWYENWLTGFTLLIMFPIIILFMVILGLAARDKSESQYAGFQKMSNHFIDSLRGLKTLQLMGISREYANNVYEVSEDYRKQTMGVLRIAMLSTFALDFFTTLSIAVVAVFLGIKLMDGTIPLYPAMVALILAPEYFMPIRDFGTDYHATLNGKNAMTAIWKVIDQPLPTDTHVLPAFKGWQPQDTLSMQHLDFTYADKRAGIQDANLTFTGPEKVAIIGASGSGKSTLLNLIGGFLQPQAADITVRGTKIPHMTQTAWQDHLSYIPQDPYLFADTIAANIRFYRPDASDQAVRDAAESAGLTTWINSLPDGYATRIGEGGRGISGGQAQRIALARTLIDTNRSIWLFDEPTAHLDIETEAALKETLVPLFANRLVIFATHRLHWLNQMDRVIVVDGGKIVAEGTPTELAAHSKPYQALVHEMRGEFNALVEK
>NZ_CP040780.1|WP_005684671.1|2674866_2675880_-|cytochrome-d-ubiquinol-oxidase-subunit-II
MSWLQILWFFLLFVLFSGFFVLEGFDFGVGMSTKLLAHNSDEEDQLVATIGPHWDGNEVWLITAGGAMFASYPMWYASLFSGFYIMFFLVLFGLIVRGVSFEFAAHAETKTGRNIWRWALACGSLIPPFILGMIFTAIIQPLPITKNGDVFPTLGNQINLLTIVGGVAVTLMMLMHGLNFIRLKTTGDLRKRARDWNSKLYYLLYAGEVVFAVLLFFMTDFFKERPISTLLILVVIVGSTVAAHIGVLKDNEVLSFIGSALGLVGVVGVIFNGLFPRVMIGQNAAMSILAKDASASPLTLTIMTIVAVILLPIALAYFIWSYVVFHKRIQAKGAVSE
>NZ_CP040780.1|WP_029607524.1|2675876_2677301_-|cytochrome-ubiquinol-oxidase-subunit-I
MLMAMDVLSLARFQFAMTTVFHFFFVPFSIGMGLVAAIMETMYVRKKDETYKKMAKFWGKIFLLSFAVGVVTGIIQEFQFGMNWSNYSRFMGDIFGVPLAIEALLAFFMESTFIGLWMFTWDRFKPAVHAIFIWMTWLGTTLSAIWILSANAFMQHPTGFAISQTTGRVKLVDFGAVITNPQLWVEFPHVIFGAFTTAGFAVAGMAAWRLLKKDHVDFYKKSLKVGLVVGTIASACAIGFGDLQTQFIIKDQPMKFAATEGIYKDTSDPAPWTLVELINTKDHTTSGNIEVPYLLSLLSYHKMNGSVKGMETANKELEAKYGKDKDYYVPVKTLFWSFRVMAGGGVLLFLLGVLGLWFSRKKKDTLLDQRWLLYILGFALWLPFIINTAGWFITELGRYPWVVYGLYTIADAVSPTTTAGQLLFTNICYFLIFTLLGGVMIYYSHRVLKNGPDGDLNTDYGVNSDPFAKEAFAK
>NZ_CP040780.1|WP_047676371.1|2677532_2678837_-|pyrimidine-nucleoside-phosphorylase
MRMVDLITKKRDHGELTDDELTWMIQQYTAEKIPDYQMSAFLMAVYFNGMSAAERDHFAFAMLHSGDVLDLSDIPGIKVDKHSTGGVGDKISIPLAPLVASLGVPVPMISGRGLGHTGGTLDKLESIPGFNVNETEAQFKRQVQTLHQAIVSASRDVAPADRRIYALRDVTGTVESIPLIAGSIMSKKLASGTDALVFDVKVGNGAFMKTSEDARALAKALVSISQAAGVKSVALLTDMNQPLGITIGNSLEIAESIAILKNRGPRDVHDLTIALAAQMLLLGKKAPSLEIATGLAEDALRDGRALNAFKQLIQAQGGDPAVVDDPRKLPQAAYRIPVKAEQSGIVTAIDTNALGVAAMQLGGGRAQKGDKLDLAVGLVLHKKLGTPVTKGDTLVMLHANDQHVDAIVELVRQAYHIGTTAPKKLPLIHEVIRP
>NZ_CP040780.1|WP_047676373.1|2678935_2679955_+|adenosine-deaminase
MDFATLHTLGKTELHCHLDGSLSLNCIRQLAQKINQPLPADDNALRKLVQAPENSENLADYLKTFDFIAPLLQTKEALQMAAFDVVAQAARENVRYIEIRFAPVLSTAGDLTLSQATEAVITGLHQAMTQFDIIAKALVCGMRQLPNADNAAMFTANAPLVGDPLVGGDFAGNEADYPTKVCAPAIETAQRLGVPLTFHAGECHCPQNIAEAIRLGIPRIGHATACFDQPELIQTIVKTHTTIELCLTSNLQTKAARSLAEFPYQALKKAGAAITINTDNRTVSNTTLTHEYERYQAYFDTTAADFLTFNLNAVNAAFIPETTKQTLRMRLKQDYAPYL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP040780_4	4.1\|1635632\|50\|NZ_CP040780\|CRISPRCasFinder	1635632-1635681	50	NZ_CP040780.1	1764118-1764167	1	0.98
NZ_CP040780_4	4.1\|1635632\|50\|NZ_CP040780\|CRISPRCasFinder	1635632-1635681	50	NZ_CP040780.1	2135504-2135553	2	0.96

1. spacer 4.1|1635632|50|NZ_CP040780|CRISPRCasFinder matches to position: 1764118-1764167, mismatch: 1, identity: 0.98

gccagcccagaaacctgcacataaggaccttggtcgcaatggccagaccc	CRISPR spacer
gccagcccagaaacctgcacataaggaccttggtcgcaatggccaaaccc	Protospacer
*********************************************.****

2. spacer 4.1|1635632|50|NZ_CP040780|CRISPRCasFinder matches to position: 2135504-2135553, mismatch: 2, identity: 0.96

gccagcccagaaacctgcacataaggaccttggtcgcaatggccagaccc	CRISPR spacer
gccagcccagaaacctgcacataaggaccttggtcgcaatgaccaaaccc	Protospacer
*****************************************.***.****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040780_1	1.3\|792357\|19\|NZ_CP040780\|CRISPRCasFinder	792357-792375	19	NZ_CP045196	Acinetobacter indicus strain TQ23 plasmid p23TQ-37k, complete sequence	29072-29090	0	1.0
NZ_CP040780_7	7.23\|2664894\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664894-2664923	30	NZ_CP026508	Lactobacillus plantarum strain NCIMB700965.EF.A plasmid punamed3, complete sequence	16187-16216	0	1.0
NZ_CP040780_7	7.23\|2664894\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664894-2664923	30	NZ_CP023494	Lactobacillus plantarum strain NCIMB 700965 plasmid unamed4, complete sequence	9115-9144	0	1.0
NZ_CP040780_7	7.23\|2664894\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664894-2664923	30	NC_019219	Lactobacillus plantarum cryptic plasmid pLJ42, complete sequence	4111-4140	0	1.0
NZ_CP040780_7	7.4\|2663640\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663640-2663669	30	EU246945	Lactobacillus phage Lrm1, complete sequence	21522-21551	1	0.967
NZ_CP040780_7	7.4\|2663640\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663640-2663669	30	NC_011104	Lactobacillus phage Lrm1, complete genome	21522-21551	1	0.967
NZ_CP040780_7	7.20\|2664696\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664696-2664725	30	KJ019154	Synechococcus phage ACG-2014b isolate Syn7803C28, complete genome	25989-26018	5	0.833
NZ_CP040780_7	7.20\|2664696\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664696-2664725	30	KJ019040	Synechococcus phage ACG-2014b isolate Syn7803C61, complete genome	25989-26018	5	0.833
NZ_CP040780_7	7.20\|2664696\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664696-2664725	30	KJ019044	Synechococcus phage ACG-2014b isolate Syn7803C69, complete genome	26077-26106	5	0.833
NZ_CP040780_7	7.20\|2664696\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664696-2664725	30	KJ019108	Synechococcus phage ACG-2014b isolate Syn7803US53, complete genome	25989-26018	5	0.833
NZ_CP040780_7	7.20\|2664696\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664696-2664725	30	KJ019061	Synechococcus phage ACG-2014b isolate Syn7803C92, complete genome	25989-26018	5	0.833
NZ_CP040780_7	7.20\|2664696\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664696-2664725	30	KJ019132	Synechococcus phage ACG-2014b isolate Syn9311C1, complete genome	25989-26018	5	0.833
NZ_CP040780_7	7.20\|2664696\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664696-2664725	30	KJ019041	Synechococcus phage ACG-2014b isolate Syn7803C66, complete genome	25977-26006	5	0.833
NZ_CP040780_7	7.20\|2664696\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664696-2664725	30	KJ019051	Synechococcus phage ACG-2014b isolate Syn7803C78, complete genome	26084-26113	5	0.833
NZ_CP040780_7	7.20\|2664696\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664696-2664725	30	KJ019109	Synechococcus phage ACG-2014b isolate Syn7803US54, complete genome	25989-26018	5	0.833
NZ_CP040780_7	7.20\|2664696\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664696-2664725	30	KJ019043	Synechococcus phage ACG-2014b isolate Syn7803C68, complete genome	25989-26018	5	0.833
NZ_CP040780_7	7.20\|2664696\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664696-2664725	30	KJ019161	Synechococcus phage ACG-2014b isolate Syn7803C36, complete genome	25989-26018	5	0.833
NZ_CP040780_7	7.20\|2664696\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664696-2664725	30	KJ019049	Synechococcus phage ACG-2014b isolate Syn7803C76, complete genome	25989-26018	5	0.833
NZ_CP040780_7	7.20\|2664696\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664696-2664725	30	KJ019060	Synechococcus phage ACG-2014b isolate Syn7803C91, complete genome	25989-26018	5	0.833
NZ_CP040780_7	7.20\|2664696\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664696-2664725	30	NC_047719	Synechococcus phage ACG-2014b isolate Syn9311C4, complete genome	25989-26018	5	0.833
NZ_CP040780_7	7.20\|2664696\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664696-2664725	30	KJ019110	Synechococcus phage ACG-2014b isolate Syn7803US56, complete genome	26084-26113	5	0.833
NZ_CP040780_7	7.20\|2664696\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664696-2664725	30	KJ019134	Synechococcus phage ACG-2014b isolate Syn7803C100, complete genome	26084-26113	5	0.833
NZ_CP040780_7	7.20\|2664696\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664696-2664725	30	KJ019104	Synechococcus phage ACG-2014b isolate Syn7803US49, complete genome	25989-26018	5	0.833
NZ_CP040780_7	7.20\|2664696\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664696-2664725	30	KU686209	Synechococcus phage S-CAM22 isolate 1209TA19, complete genome	25099-25128	5	0.833
NZ_CP040780_7	7.20\|2664696\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664696-2664725	30	KU686208	Synechococcus phage S-CAM22 isolate 0310NB44, complete genome	25129-25158	5	0.833
NZ_CP040780_7	7.20\|2664696\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664696-2664725	30	KJ019042	Synechococcus phage ACG-2014b isolate Syn7803C67, complete genome	25989-26018	5	0.833
NZ_CP040780_7	7.20\|2664696\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664696-2664725	30	KU686207	Synechococcus phage S-CAM22 isolate 0210CC35, complete genome	25135-25164	5	0.833
NZ_CP040780_7	7.3\|2663574\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663574-2663603	30	GQ141189	Bifidobacterium phage Bbif-1, complete sequence	3125-3154	6	0.8
NZ_CP040780_7	7.5\|2663706\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663706-2663735	30	NZ_CP022955	Lactobacillus paracasei subsp. paracasei strain IBB3423 plasmid pLCAKO.1, complete sequence	25-54	6	0.8
NZ_CP040780_7	7.5\|2663706\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663706-2663735	30	MN693827	Marine virus AFVG_250M166, complete genome	44136-44165	6	0.8
NZ_CP040780_7	7.5\|2663706\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663706-2663735	30	MN694731	Marine virus AFVG_250M1191, complete genome	37169-37198	6	0.8
NZ_CP040780_7	7.5\|2663706\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663706-2663735	30	MN693724	Marine virus AFVG_250M1190, complete genome	37494-37523	6	0.8
NZ_CP040780_7	7.9\|2663970\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663970-2663999	30	AP014353	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S39-C37, * SEQUENCING IN PROGRESS *	5328-5357	6	0.8
NZ_CP040780_7	7.9\|2663970\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663970-2663999	30	MH622943	Myoviridae sp. isolate ctbc_4, complete genome	222995-223024	6	0.8
NZ_CP040780_7	7.9\|2663970\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663970-2663999	30	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	807764-807793	6	0.8
NZ_CP040780_7	7.9\|2663970\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663970-2663999	30	MK774614	Aeromonas phage CF8, complete genome	81795-81824	6	0.8
NZ_CP040780_7	7.17\|2664498\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664498-2664527	30	NC_010010	Bacillus megaterium QM B1551 plasmid pBM300, complete sequence	3733-3762	6	0.8
NZ_CP040780_7	7.18\|2664564\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664564-2664593	30	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	1669147-1669176	6	0.8
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP015730	Bacillus cereus strain A1 plasmid pBCA1, complete sequence	95035-95064	6	0.8
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP015595	Acinetobacter sp. NCu2D-2 plasmid unnamed, complete sequence	62789-62818	6	0.8
NZ_CP040780_7	7.4\|2663640\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663640-2663669	30	MN369764	Mycobacterium phage Rahalelujah, complete genome	21976-22005	7	0.767
NZ_CP040780_7	7.9\|2663970\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663970-2663999	30	NZ_AP018829	Asticcacaulis excentricus strain M6 plasmid pASEM-1, complete sequence	150797-150826	7	0.767
NZ_CP040780_7	7.9\|2663970\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663970-2663999	30	MG189906	Stenotrophomonas phage vB_SmaS_DLP_5, complete genome	24568-24597	7	0.767
NZ_CP040780_7	7.9\|2663970\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663970-2663999	30	NC_020420	Uncultured Termite group 1 bacterium phylotype Rs-D17 plasmid pTGRD1, complete sequence	7527-7556	7	0.767
NZ_CP040780_7	7.15\|2664366\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664366-2664395	30	MN035126	Leviviridae sp. isolate H4_Rhizo_43_scaffold_356_e_3383 RNA-dependent RNA polymerase (H4Rhizo43356e3383_000001), hypothetical protein (H4Rhizo43356e3383_000002), and hypothetical protein (H4Rhizo43356e3383_000003) genes, complete cds; and hypothetical protein (H4Rhizo43356e3383_000004) gene, partial cds	2880-2909	7	0.767
NZ_CP040780_7	7.15\|2664366\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664366-2664395	30	NC_013698	Clavibacter phage CMP1, complete genome	45775-45804	7	0.767
NZ_CP040780_7	7.16\|2664432\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664432-2664461	30	NZ_CP023065	Sinorhizobium sp. CCBAU 05631 plasmid pSS05631a, complete sequence	292140-292169	7	0.767
NZ_CP040780_7	7.16\|2664432\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664432-2664461	30	NZ_CP035001	Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence	325434-325463	7	0.767
NZ_CP040780_7	7.20\|2664696\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664696-2664725	30	MN694609	Marine virus AFVG_250M1101, complete genome	18841-18870	7	0.767
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	AP022644	Bacillus wiedmannii PL1 plasmid pBwiPL1-1 DNA, complete sequence	169703-169732	7	0.767
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP016596	Bacillus cereus strain K8 plasmid pBCM301, complete sequence	298815-298844	7	0.767
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NC_023074	Bacillus thuringiensis serovar tenebrionis str. YBT-1765 plasmid pBMB165, complete sequence	67779-67808	7	0.767
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NC_018688	Bacillus thuringiensis MC28 plasmid pMC319, complete sequence	125101-125130	7	0.767
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP045608	Bacillus cereus strain SB1 plasmid p2, complete sequence	251841-251870	7	0.767
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP010112	Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence	159563-159592	7	0.767
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	CP024686	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence	256867-256896	7	0.767
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NC_018685	Bacillus thuringiensis MC28 plasmid pMC95, complete sequence	68158-68187	7	0.767
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP016590	Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-02, complete sequence	228874-228903	7	0.767
NZ_CP040780_7	7.9\|2663970\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663970-2663999	30	MT774386	CrAssphage cr110_1, complete genome	23658-23687	8	0.733
NZ_CP040780_7	7.9\|2663970\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663970-2663999	30	AP013461	Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C29A-MedDCM-OCT-S24-C21	22260-22289	8	0.733
NZ_CP040780_7	7.9\|2663970\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663970-2663999	30	AP013749	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C29A-MedDCM-OCT-S45-C34, * SEQUENCING IN PROGRESS *	13976-14005	8	0.733
NZ_CP040780_7	7.9\|2663970\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663970-2663999	30	AP013743	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C29A-MedDCM-OCT-S34-C32, * SEQUENCING IN PROGRESS *	16622-16651	8	0.733
NZ_CP040780_7	7.9\|2663970\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663970-2663999	30	AP013742	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C29A-MedDCM-OCT-S30-C25, * SEQUENCING IN PROGRESS *	14366-14395	8	0.733
NZ_CP040780_7	7.9\|2663970\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663970-2663999	30	AP013463	Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C29A-MedDCM-OCT-S42-C45	36144-36173	8	0.733
NZ_CP040780_7	7.9\|2663970\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663970-2663999	30	AP013747	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C29A-MedDCM-OCT-S43-C36, * SEQUENCING IN PROGRESS *	13964-13993	8	0.733
NZ_CP040780_7	7.9\|2663970\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663970-2663999	30	AP013746	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C29A-MedDCM-OCT-S40-C25, * SEQUENCING IN PROGRESS *	17540-17569	8	0.733
NZ_CP040780_7	7.9\|2663970\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663970-2663999	30	NC_021300	Pseudoalteromonas phage RIO-1, complete genome	37835-37864	8	0.733
NZ_CP040780_7	7.9\|2663970\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663970-2663999	30	NC_006842	Aliivibrio fischeri ES114 plasmid pES100, complete sequence	32865-32894	8	0.733
NZ_CP040780_7	7.9\|2663970\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663970-2663999	30	NC_016853	Aliivibrio fischeri strain ES657 plasmid pES657-44, complete sequence	37034-37063	8	0.733
NZ_CP040780_7	7.9\|2663970\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663970-2663999	30	AP013462	Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C29A-MedDCM-OCT-S33-C24	2715-2744	8	0.733
NZ_CP040780_7	7.9\|2663970\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663970-2663999	30	NC_023007	Bacillus phage vB_BanS-Tsamsa, complete genome	39195-39224	8	0.733
NZ_CP040780_7	7.9\|2663970\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663970-2663999	30	MK415406	Phage FAKO27_000238F, complete genome	35191-35220	8	0.733
NZ_CP040780_7	7.9\|2663970\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663970-2663999	30	AP014436	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C29A-MedDCM-OCT-S31-C13, * SEQUENCING IN PROGRESS *, 5 ordered pieces	21437-21466	8	0.733
NZ_CP040780_7	7.9\|2663970\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663970-2663999	30	AP013744	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C29A-MedDCM-OCT-S35-C228, * SEQUENCING IN PROGRESS *	668-697	8	0.733
NZ_CP040780_7	7.9\|2663970\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663970-2663999	30	AP013745	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C29A-MedDCM-OCT-S39-C31, * SEQUENCING IN PROGRESS *	23436-23465	8	0.733
NZ_CP040780_7	7.9\|2663970\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663970-2663999	30	AP013748	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C29A-MedDCM-OCT-S44-C33, * SEQUENCING IN PROGRESS *	21843-21872	8	0.733
NZ_CP040780_7	7.20\|2664696\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664696-2664725	30	MK249189	Blackfly microvirus SF02 isolate 123, complete genome	1845-1874	8	0.733
NZ_CP040780_7	7.20\|2664696\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664696-2664725	30	MG945393	UNVERIFIED: Microviridae sp. isolate 3492-1711, complete genome	1808-1837	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP015730	Bacillus cereus strain A1 plasmid pBCA1, complete sequence	94585-94614	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP015730	Bacillus cereus strain A1 plasmid pBCA1, complete sequence	94810-94839	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	AP022644	Bacillus wiedmannii PL1 plasmid pBwiPL1-1 DNA, complete sequence	169928-169957	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	AP022644	Bacillus wiedmannii PL1 plasmid pBwiPL1-1 DNA, complete sequence	170153-170182	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP016596	Bacillus cereus strain K8 plasmid pBCM301, complete sequence	299040-299069	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP016596	Bacillus cereus strain K8 plasmid pBCM301, complete sequence	299265-299294	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP045608	Bacillus cereus strain SB1 plasmid p2, complete sequence	252066-252095	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP045608	Bacillus cereus strain SB1 plasmid p2, complete sequence	252228-252257	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP010112	Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence	159113-159142	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP010112	Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence	159338-159367	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	CP024686	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence	256417-256446	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	CP024686	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence	256642-256671	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NC_018685	Bacillus thuringiensis MC28 plasmid pMC95, complete sequence	67711-67740	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NC_018685	Bacillus thuringiensis MC28 plasmid pMC95, complete sequence	67933-67962	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NC_018685	Bacillus thuringiensis MC28 plasmid pMC95, complete sequence	68383-68412	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NC_018685	Bacillus thuringiensis MC28 plasmid pMC95, complete sequence	68608-68637	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NC_018685	Bacillus thuringiensis MC28 plasmid pMC95, complete sequence	68833-68862	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP016590	Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-02, complete sequence	228424-228453	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP016590	Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-02, complete sequence	228649-228678	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NC_011973	Bacillus cereus Q1 plasmid pBc239, complete sequence	190523-190552	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP013276	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-1-360K, complete sequence	78990-79019	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP013276	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-1-360K, complete sequence	79215-79244	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP020745	Bacillus mycoides strain Gnyt1 plasmid unnamed2, complete sequence	52868-52897	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP020745	Bacillus mycoides strain Gnyt1 plasmid unnamed2, complete sequence	53093-53122	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP039722	Bacillus thuringiensis strain BT-59 plasmid p1, complete sequence	216334-216363	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP039722	Bacillus thuringiensis strain BT-59 plasmid p1, complete sequence	216559-216588	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	CP024689	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-5-125K, complete sequence	101885-101914	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	CP024689	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-5-125K, complete sequence	102110-102139	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	CP046513	Bacillus cereus strain JHU plasmid p2, complete sequence	56935-56964	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP040345	Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence	335103-335132	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP009349	Bacillus thuringiensis HD1002 plasmid 1, complete sequence	154990-155019	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP009349	Bacillus thuringiensis HD1002 plasmid 1, complete sequence	155215-155244	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP045023	Bacillus thuringiensis strain JW-1 plasmid p1, complete sequence	78991-79020	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP045023	Bacillus thuringiensis strain JW-1 plasmid p1, complete sequence	79216-79245	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP012103	Bacillus thuringiensis strain HS18-1 plasmid pHS18-4, complete sequence	88855-88884	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP012103	Bacillus thuringiensis strain HS18-1 plasmid pHS18-4, complete sequence	89077-89106	8	0.733
NZ_CP040780_7	7.21\|2664762\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664762-2664791	30	NZ_CP015440	Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence	14178-14207	8	0.733
NZ_CP040780_7	7.22\|2664828\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664828-2664857	30	NZ_CP048426	Rhizobium daejeonense strain KACC 13094 plasmid unnamed3, complete sequence	10816-10845	8	0.733
NZ_CP040780_7	7.1\|2663442\|30\|NZ_CP040780\|CRISPRCasFinder,CRT	2663442-2663471	30	MT457552	Shewanella phage Thanatos-1, complete genome	10923-10952	9	0.7
NZ_CP040780_7	7.9\|2663970\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2663970-2663999	30	NZ_CP021876	Enterococcus wangshanyuanii strain MN05 plasmid unnamed3	75539-75568	9	0.7
NZ_CP040780_7	7.13\|2664234\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664234-2664263	30	KY653124	Staphylococcus phage IME1367_01, complete genome	13356-13385	9	0.7
NZ_CP040780_7	7.17\|2664498\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664498-2664527	30	NZ_CP014688	Acetobacter persici strain TMW2.1084 plasmid pAC1084_1, complete sequence	484181-484210	9	0.7
NZ_CP040780_7	7.17\|2664498\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664498-2664527	30	NZ_CP041069	Bacillus megaterium strain KNU-01 plasmid pKNU_01_5, complete sequence	11642-11671	9	0.7
NZ_CP040780_7	7.17\|2664498\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664498-2664527	30	NZ_CP032531	Bacillus megaterium NCT-2 plasmid pNCT2_3, complete sequence	57100-57129	9	0.7
NZ_CP040780_7	7.17\|2664498\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664498-2664527	30	NZ_CP023000	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence	1490828-1490857	9	0.7
NZ_CP040780_7	7.19\|2664630\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664630-2664659	30	MT080601	UNVERIFIED: Staphylococcus phage vB_SauM_EW72, complete genome	113638-113667	10	0.667
NZ_CP040780_7	7.19\|2664630\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664630-2664659	30	MT080585	UNVERIFIED: Staphylococcus phage vB_SauM_EW18, complete genome	57717-57746	10	0.667
NZ_CP040780_7	7.19\|2664630\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664630-2664659	30	MT080591	UNVERIFIED: Staphylococcus phage vB_SauM_EW29, complete genome	54253-54282	10	0.667
NZ_CP040780_7	7.19\|2664630\|30\|NZ_CP040780\|CRISPRCasFinder,CRT,PILER-CR	2664630-2664659	30	MT080589	UNVERIFIED: Staphylococcus phage vB_SauM_EW26, complete genome	125748-125777	10	0.667

1. spacer 1.3|792357|19|NZ_CP040780|CRISPRCasFinder matches to NZ_CP045196 (Acinetobacter indicus strain TQ23 plasmid p23TQ-37k, complete sequence) position: , mismatch: 0, identity: 1.0

ggcttctgaagctactgca	CRISPR spacer
ggcttctgaagctactgca	Protospacer
*******************

2. spacer 7.23|2664894|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026508 (Lactobacillus plantarum strain NCIMB700965.EF.A plasmid punamed3, complete sequence) position: , mismatch: 0, identity: 1.0

agacgttttgggtcaatctggggtaattgt	CRISPR spacer
agacgttttgggtcaatctggggtaattgt	Protospacer
******************************

3. spacer 7.23|2664894|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023494 (Lactobacillus plantarum strain NCIMB 700965 plasmid unamed4, complete sequence) position: , mismatch: 0, identity: 1.0

agacgttttgggtcaatctggggtaattgt	CRISPR spacer
agacgttttgggtcaatctggggtaattgt	Protospacer
******************************

4. spacer 7.23|2664894|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NC_019219 (Lactobacillus plantarum cryptic plasmid pLJ42, complete sequence) position: , mismatch: 0, identity: 1.0

agacgttttgggtcaatctggggtaattgt	CRISPR spacer
agacgttttgggtcaatctggggtaattgt	Protospacer
******************************

5. spacer 7.4|2663640|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to EU246945 (Lactobacillus phage Lrm1, complete sequence) position: , mismatch: 1, identity: 0.967

cgcaataagcacaacgagatccgccaagtc	CRISPR spacer
cgcaataagcacaacgagatccgacaagtc	Protospacer
*********************** ******

6. spacer 7.4|2663640|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NC_011104 (Lactobacillus phage Lrm1, complete genome) position: , mismatch: 1, identity: 0.967

cgcaataagcacaacgagatccgccaagtc	CRISPR spacer
cgcaataagcacaacgagatccgacaagtc	Protospacer
*********************** ******

7. spacer 7.20|2664696|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to KJ019154 (Synechococcus phage ACG-2014b isolate Syn7803C28, complete genome) position: , mismatch: 5, identity: 0.833

gtcttgcataccctgaataacactattcaa	CRISPR spacer
aacttgcataccttgaataacaccattcac	Protospacer
. **********.**********.*****

8. spacer 7.20|2664696|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to KJ019040 (Synechococcus phage ACG-2014b isolate Syn7803C61, complete genome) position: , mismatch: 5, identity: 0.833

gtcttgcataccctgaataacactattcaa	CRISPR spacer
aacttgcataccttgaataacaccattcac	Protospacer
. **********.**********.*****

9. spacer 7.20|2664696|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to KJ019044 (Synechococcus phage ACG-2014b isolate Syn7803C69, complete genome) position: , mismatch: 5, identity: 0.833

gtcttgcataccctgaataacactattcaa	CRISPR spacer
aacttgcataccttgaataacaccattcac	Protospacer
. **********.**********.*****

10. spacer 7.20|2664696|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to KJ019108 (Synechococcus phage ACG-2014b isolate Syn7803US53, complete genome) position: , mismatch: 5, identity: 0.833

gtcttgcataccctgaataacactattcaa	CRISPR spacer
aacttgcataccttgaataacaccattcac	Protospacer
. **********.**********.*****

11. spacer 7.20|2664696|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to KJ019061 (Synechococcus phage ACG-2014b isolate Syn7803C92, complete genome) position: , mismatch: 5, identity: 0.833

gtcttgcataccctgaataacactattcaa	CRISPR spacer
aacttgcataccttgaataacaccattcac	Protospacer
. **********.**********.*****

12. spacer 7.20|2664696|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to KJ019132 (Synechococcus phage ACG-2014b isolate Syn9311C1, complete genome) position: , mismatch: 5, identity: 0.833

gtcttgcataccctgaataacactattcaa	CRISPR spacer
aacttgcataccttgaataacaccattcac	Protospacer
. **********.**********.*****

13. spacer 7.20|2664696|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to KJ019041 (Synechococcus phage ACG-2014b isolate Syn7803C66, complete genome) position: , mismatch: 5, identity: 0.833

gtcttgcataccctgaataacactattcaa	CRISPR spacer
aacttgcataccttgaataacaccattcac	Protospacer
. **********.**********.*****

14. spacer 7.20|2664696|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to KJ019051 (Synechococcus phage ACG-2014b isolate Syn7803C78, complete genome) position: , mismatch: 5, identity: 0.833

gtcttgcataccctgaataacactattcaa	CRISPR spacer
aacttgcataccttgaataacaccattcac	Protospacer
. **********.**********.*****

15. spacer 7.20|2664696|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to KJ019109 (Synechococcus phage ACG-2014b isolate Syn7803US54, complete genome) position: , mismatch: 5, identity: 0.833

gtcttgcataccctgaataacactattcaa	CRISPR spacer
aacttgcataccttgaataacaccattcac	Protospacer
. **********.**********.*****

16. spacer 7.20|2664696|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to KJ019043 (Synechococcus phage ACG-2014b isolate Syn7803C68, complete genome) position: , mismatch: 5, identity: 0.833

gtcttgcataccctgaataacactattcaa	CRISPR spacer
aacttgcataccttgaataacaccattcac	Protospacer
. **********.**********.*****

17. spacer 7.20|2664696|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to KJ019161 (Synechococcus phage ACG-2014b isolate Syn7803C36, complete genome) position: , mismatch: 5, identity: 0.833

gtcttgcataccctgaataacactattcaa	CRISPR spacer
aacttgcataccttgaataacaccattcac	Protospacer
. **********.**********.*****

18. spacer 7.20|2664696|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to KJ019049 (Synechococcus phage ACG-2014b isolate Syn7803C76, complete genome) position: , mismatch: 5, identity: 0.833

gtcttgcataccctgaataacactattcaa	CRISPR spacer
aacttgcataccttgaataacaccattcac	Protospacer
. **********.**********.*****

19. spacer 7.20|2664696|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to KJ019060 (Synechococcus phage ACG-2014b isolate Syn7803C91, complete genome) position: , mismatch: 5, identity: 0.833

gtcttgcataccctgaataacactattcaa	CRISPR spacer
aacttgcataccttgaataacaccattcac	Protospacer
. **********.**********.*****

20. spacer 7.20|2664696|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NC_047719 (Synechococcus phage ACG-2014b isolate Syn9311C4, complete genome) position: , mismatch: 5, identity: 0.833

gtcttgcataccctgaataacactattcaa	CRISPR spacer
aacttgcataccttgaataacaccattcac	Protospacer
. **********.**********.*****

21. spacer 7.20|2664696|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to KJ019110 (Synechococcus phage ACG-2014b isolate Syn7803US56, complete genome) position: , mismatch: 5, identity: 0.833

gtcttgcataccctgaataacactattcaa	CRISPR spacer
aacttgcataccttgaataacaccattcac	Protospacer
. **********.**********.*****

22. spacer 7.20|2664696|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to KJ019134 (Synechococcus phage ACG-2014b isolate Syn7803C100, complete genome) position: , mismatch: 5, identity: 0.833

gtcttgcataccctgaataacactattcaa	CRISPR spacer
aacttgcataccttgaataacaccattcac	Protospacer
. **********.**********.*****

23. spacer 7.20|2664696|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to KJ019104 (Synechococcus phage ACG-2014b isolate Syn7803US49, complete genome) position: , mismatch: 5, identity: 0.833

gtcttgcataccctgaataacactattcaa	CRISPR spacer
aacttgcataccttgaataacaccattcac	Protospacer
. **********.**********.*****

24. spacer 7.20|2664696|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to KU686209 (Synechococcus phage S-CAM22 isolate 1209TA19, complete genome) position: , mismatch: 5, identity: 0.833

gtcttgcataccctgaataacactattcaa	CRISPR spacer
tacctgcataccctgaataacaccattcac	Protospacer
  *.*******************.*****

25. spacer 7.20|2664696|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to KU686208 (Synechococcus phage S-CAM22 isolate 0310NB44, complete genome) position: , mismatch: 5, identity: 0.833

gtcttgcataccctgaataacactattcaa	CRISPR spacer
tacctgcataccctgaataacaccattcac	Protospacer
  *.*******************.*****

26. spacer 7.20|2664696|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to KJ019042 (Synechococcus phage ACG-2014b isolate Syn7803C67, complete genome) position: , mismatch: 5, identity: 0.833

gtcttgcataccctgaataacactattcaa	CRISPR spacer
aacttgcataccttgaataacaccattcac	Protospacer
. **********.**********.*****

27. spacer 7.20|2664696|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to KU686207 (Synechococcus phage S-CAM22 isolate 0210CC35, complete genome) position: , mismatch: 5, identity: 0.833

gtcttgcataccctgaataacactattcaa	CRISPR spacer
tacctgcataccctgaataacaccattcac	Protospacer
  *.*******************.*****

28. spacer 7.3|2663574|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to GQ141189 (Bifidobacterium phage Bbif-1, complete sequence) position: , mismatch: 6, identity: 0.8

ggattgtcaagccggacggcaaaaccatca	CRISPR spacer
gcggcgtcaagcccgacggcaagaccatca	Protospacer
* . .******** ********.*******

29. spacer 7.5|2663706|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022955 (Lactobacillus paracasei subsp. paracasei strain IBB3423 plasmid pLCAKO.1, complete sequence) position: , mismatch: 6, identity: 0.8

ccgtcaagtaacacgggggtacaaaataca	CRISPR spacer
cgtattagtaacacgggggtaccaaataca	Protospacer
*   . **************** *******

30. spacer 7.5|2663706|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to MN693827 (Marine virus AFVG_250M166, complete genome) position: , mismatch: 6, identity: 0.8

ccgtcaagtaacacgggggtacaaaataca	CRISPR spacer
caagcgactaacacgggagtacaaaataca	Protospacer
* . *.* *********.************

31. spacer 7.5|2663706|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to MN694731 (Marine virus AFVG_250M1191, complete genome) position: , mismatch: 6, identity: 0.8

ccgtcaagtaacacgggggtacaaaataca	CRISPR spacer
caagcgactaacacgggagtacaaaataca	Protospacer
* . *.* *********.************

32. spacer 7.5|2663706|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to MN693724 (Marine virus AFVG_250M1190, complete genome) position: , mismatch: 6, identity: 0.8

ccgtcaagtaacacgggggtacaaaataca	CRISPR spacer
caagcgactaacacgggagtacaaaataca	Protospacer
* . *.* *********.************

33. spacer 7.9|2663970|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to AP014353 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S39-C37, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.8

cgccgtcaagttcttctgtttcttcatcgt	CRISPR spacer
cttcgtcaagttcttctgcttcttcgtcag	Protospacer
* .***************.******.**.

34. spacer 7.9|2663970|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to MH622943 (Myoviridae sp. isolate ctbc_4, complete genome) position: , mismatch: 6, identity: 0.8

cgccgtcaagttcttctgtttcttcatcgt	CRISPR spacer
catcaacaaattcttttgtttcttcatcgt	Protospacer
*..*. ***.*****.**************

35. spacer 7.9|2663970|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 6, identity: 0.8

cgccgtcaagttcttctgtttcttcatcgt	CRISPR spacer
ctacggtaagtgctgctgtttcttcatcgt	Protospacer
*  ** .**** ** ***************

36. spacer 7.9|2663970|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to MK774614 (Aeromonas phage CF8, complete genome) position: , mismatch: 6, identity: 0.8

cgccgtcaagttcttctgtttcttcatcgt	CRISPR spacer
aggcttcaacttcttttgtttcttcatctt	Protospacer
 * * **** *****.************ *

37. spacer 7.17|2664498|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NC_010010 (Bacillus megaterium QM B1551 plasmid pBM300, complete sequence) position: , mismatch: 6, identity: 0.8

gcaaaagcatctccaacaatttgccagcca	CRISPR spacer
ccaaaaacatctcgaacaatttgccctaca	Protospacer
 *****.****** ***********   **

38. spacer 7.18|2664564|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 6, identity: 0.8

tcagcccacgcccgggattttgcgaatcag	CRISPR spacer
ggagccgtcgcccgggattttgcgaatggg	Protospacer
  ****  ******************* .*

39. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015730 (Bacillus cereus strain A1 plasmid pBCA1, complete sequence) position: , mismatch: 6, identity: 0.8

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccaaatcaatttaaac	Protospacer
  *  .******************* ****

40. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015595 (Acinetobacter sp. NCu2D-2 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
atttaaatttaaatccaaatcaattgcatc	Protospacer
*  .******* ************** * *

41. spacer 7.4|2663640|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to MN369764 (Mycobacterium phage Rahalelujah, complete genome) position: , mismatch: 7, identity: 0.767

cgcaataagcacaacgagatccgccaagtc	CRISPR spacer
ggcaacaagctcaacgagatccgcgatcac	Protospacer
 ****.**** ************* *   *

42. spacer 7.9|2663970|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018829 (Asticcacaulis excentricus strain M6 plasmid pASEM-1, complete sequence) position: , mismatch: 7, identity: 0.767

cgccgt-caagttcttctgtttcttcatcgt	CRISPR spacer
-gcgatataatttcttctgtttcttcatcta	Protospacer
 ** .* .** ******************

43. spacer 7.9|2663970|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to MG189906 (Stenotrophomonas phage vB_SmaS_DLP_5, complete genome) position: , mismatch: 7, identity: 0.767

cgccgtcaagttcttctgtttcttcatcgt	CRISPR spacer
cgatgagaagttcttctggttcttcatcaa	Protospacer
** .*  *********** *********.

44. spacer 7.9|2663970|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NC_020420 (Uncultured Termite group 1 bacterium phylotype Rs-D17 plasmid pTGRD1, complete sequence) position: , mismatch: 7, identity: 0.767

cgccgtcaagttcttctgtttcttcatcgt	CRISPR spacer
taccgtcaagttcttttgtttcctcttttt	Protospacer
..*************.******.** *. *

45. spacer 7.15|2664366|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to MN035126 (Leviviridae sp. isolate H4_Rhizo_43_scaffold_356_e_3383 RNA-dependent RNA polymerase (H4Rhizo43356e3383_000001), hypothetical protein (H4Rhizo43356e3383_000002), and hypothetical protein (H4Rhizo43356e3383_000003) genes, complete cds; and hypothetical protein (H4Rhizo43356e3383_000004) gene, partial cds) position: , mismatch: 7, identity: 0.767

-agccaggtcatcgacacattgacatttttg	CRISPR spacer
tagtta-ctcatcgacactttgacattttcc	Protospacer
 **..*  ********** **********.

46. spacer 7.15|2664366|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NC_013698 (Clavibacter phage CMP1, complete genome) position: , mismatch: 7, identity: 0.767

agccaggtcatcgacacattgacatttttg	CRISPR spacer
cgccaggtcaccgtcacattgacaatggtc	Protospacer
 *********.** ********** *  *

47. spacer 7.16|2664432|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023065 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631a, complete sequence) position: , mismatch: 7, identity: 0.767

taaatcaatgggcttaacgccccataaccc	CRISPR spacer
tcaatcaatggtcttaacgcccccaatgca	Protospacer
* ********* ***********  *  *

48. spacer 7.16|2664432|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 7, identity: 0.767

taaatcaatgggcttaacgccccataaccc	CRISPR spacer
tgatgctttgggcttaacgccccagaaccg	Protospacer
*.*  *  **************** ****

49. spacer 7.20|2664696|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to MN694609 (Marine virus AFVG_250M1101, complete genome) position: , mismatch: 7, identity: 0.767

gtcttgcataccctgaataacactattcaa	CRISPR spacer
gtcttgcatcccctgaataacattagcagt	Protospacer
********* ************.** . .

50. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to AP022644 (Bacillus wiedmannii PL1 plasmid pBwiPL1-1 DNA, complete sequence) position: , mismatch: 7, identity: 0.767

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccaaatcaatttaaag	Protospacer
  *  .******************* ***

51. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016596 (Bacillus cereus strain K8 plasmid pBCM301, complete sequence) position: , mismatch: 7, identity: 0.767

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccaaatcaatttaaag	Protospacer
  *  .******************* ***

52. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NC_023074 (Bacillus thuringiensis serovar tenebrionis str. YBT-1765 plasmid pBMB165, complete sequence) position: , mismatch: 7, identity: 0.767

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccaaatcaatttaaag	Protospacer
  *  .******************* ***

53. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NC_018688 (Bacillus thuringiensis MC28 plasmid pMC319, complete sequence) position: , mismatch: 7, identity: 0.767

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccaaatcaatttaaag	Protospacer
  *  .******************* ***

54. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045608 (Bacillus cereus strain SB1 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.767

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccaaatcaatttaaag	Protospacer
  *  .******************* ***

55. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010112 (Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence) position: , mismatch: 7, identity: 0.767

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccaaatcaatttaaag	Protospacer
  *  .******************* ***

56. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to CP024686 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence) position: , mismatch: 7, identity: 0.767

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccaaatcaatttaaag	Protospacer
  *  .******************* ***

57. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NC_018685 (Bacillus thuringiensis MC28 plasmid pMC95, complete sequence) position: , mismatch: 7, identity: 0.767

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccaaatcaatttaaag	Protospacer
  *  .******************* ***

58. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016590 (Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-02, complete sequence) position: , mismatch: 7, identity: 0.767

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccaaatcaatttaaag	Protospacer
  *  .******************* ***

59. spacer 7.9|2663970|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to MT774386 (CrAssphage cr110_1, complete genome) position: , mismatch: 8, identity: 0.733

cgccgtcaagttcttctgtttcttcatcgt	CRISPR spacer
caggagcaacttcttctgtttcttcatcac	Protospacer
*.  . *** ******************..

60. spacer 7.9|2663970|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to AP013461 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C29A-MedDCM-OCT-S24-C21) position: , mismatch: 8, identity: 0.733

cgccgtcaagttcttctgtttcttcatcgt	CRISPR spacer
gttcatcaagttcttcagtttcttcaactg	Protospacer
  .*.*********** ********* *

61. spacer 7.9|2663970|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to AP013749 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C29A-MedDCM-OCT-S45-C34, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

cgccgtcaagttcttctgtttcttcatcgt	CRISPR spacer
gttcatcaagttcttcagtttcttcaactg	Protospacer
  .*.*********** ********* *

62. spacer 7.9|2663970|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to AP013743 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C29A-MedDCM-OCT-S34-C32, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

cgccgtcaagttcttctgtttcttcatcgt	CRISPR spacer
gttcatcaagttcttcagtttcttcaactg	Protospacer
  .*.*********** ********* *

63. spacer 7.9|2663970|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to AP013742 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C29A-MedDCM-OCT-S30-C25, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

cgccgtcaagttcttctgtttcttcatcgt	CRISPR spacer
gttcatcaagttcttcagtttcttcaactg	Protospacer
  .*.*********** ********* *

64. spacer 7.9|2663970|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to AP013463 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C29A-MedDCM-OCT-S42-C45) position: , mismatch: 8, identity: 0.733

cgccgtcaagttcttctgtttcttcatcgt	CRISPR spacer
gttcatcaagttcttcagtttcttcaactg	Protospacer
  .*.*********** ********* *

65. spacer 7.9|2663970|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to AP013747 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C29A-MedDCM-OCT-S43-C36, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

cgccgtcaagttcttctgtttcttcatcgt	CRISPR spacer
gttcatcaagttcttcagtttcttcaactg	Protospacer
  .*.*********** ********* *

66. spacer 7.9|2663970|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to AP013746 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C29A-MedDCM-OCT-S40-C25, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

cgccgtcaagttcttctgtttcttcatcgt	CRISPR spacer
gttcatcaagttcttcagtttcttcaactg	Protospacer
  .*.*********** ********* *

67. spacer 7.9|2663970|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NC_021300 (Pseudoalteromonas phage RIO-1, complete genome) position: , mismatch: 8, identity: 0.733

cgccgtcaagttcttctgtttcttcatcgt	CRISPR spacer
cagtatgaagttcttctgtttcatcatccc	Protospacer
*. ..* *************** ***** .

68. spacer 7.9|2663970|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NC_006842 (Aliivibrio fischeri ES114 plasmid pES100, complete sequence) position: , mismatch: 8, identity: 0.733

cgccgtcaagttcttctgtttcttcatcgt	CRISPR spacer
agccgtgaagttcttctttttctttggtat	Protospacer
 ***** ********** ******.. ..*

69. spacer 7.9|2663970|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NC_016853 (Aliivibrio fischeri strain ES657 plasmid pES657-44, complete sequence) position: , mismatch: 8, identity: 0.733

cgccgtcaagttcttctgtttcttcatcgt	CRISPR spacer
agccgtgaagttcttctttttctttggtat	Protospacer
 ***** ********** ******.. ..*

70. spacer 7.9|2663970|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to AP013462 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C29A-MedDCM-OCT-S33-C24) position: , mismatch: 8, identity: 0.733

cgccgtcaagttcttctgtttcttcatcgt	CRISPR spacer
gttcatcaagttcttcagtttcttcaactg	Protospacer
  .*.*********** ********* *

71. spacer 7.9|2663970|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NC_023007 (Bacillus phage vB_BanS-Tsamsa, complete genome) position: , mismatch: 8, identity: 0.733

cgccgtcaagttcttctgtttcttcatcgt	CRISPR spacer
tctcaacaagttctgctgtttcctcatcgg	Protospacer
. .*. ******** *******.******

72. spacer 7.9|2663970|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to MK415406 (Phage FAKO27_000238F, complete genome) position: , mismatch: 8, identity: 0.733

cgccgtcaagttcttctgtttcttcatcgt	CRISPR spacer
gcgtatcgatttcttctgtttcttcatcat	Protospacer
   ..**.* ******************.*

73. spacer 7.9|2663970|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to AP014436 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C29A-MedDCM-OCT-S31-C13, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces) position: , mismatch: 8, identity: 0.733

cgccgtcaagttcttctgtttcttcatcgt	CRISPR spacer
gttcatcaagttcttcagtttcttcaactg	Protospacer
  .*.*********** ********* *

74. spacer 7.9|2663970|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to AP013744 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C29A-MedDCM-OCT-S35-C228, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

cgccgtcaagttcttctgtttcttcatcgt	CRISPR spacer
gttcatcaagttcttcagtttcttcaactg	Protospacer
  .*.*********** ********* *

75. spacer 7.9|2663970|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to AP013745 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C29A-MedDCM-OCT-S39-C31, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

cgccgtcaagttcttctgtttcttcatcgt	CRISPR spacer
gttcatcaagttcttcagtttcttcaactg	Protospacer
  .*.*********** ********* *

76. spacer 7.9|2663970|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to AP013748 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C29A-MedDCM-OCT-S44-C33, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

cgccgtcaagttcttctgtttcttcatcgt	CRISPR spacer
gttcatcaagttcttcagtttcttcaactg	Protospacer
  .*.*********** ********* *

77. spacer 7.20|2664696|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to MK249189 (Blackfly microvirus SF02 isolate 123, complete genome) position: , mismatch: 8, identity: 0.733

gtcttgcataccctgaataacactattcaa	CRISPR spacer
cccctgcatacccttaataacactatcgcc	Protospacer
 .*.********** ***********.

78. spacer 7.20|2664696|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to MG945393 (UNVERIFIED: Microviridae sp. isolate 3492-1711, complete genome) position: , mismatch: 8, identity: 0.733

gtcttgcataccctgaataacactattcaa	CRISPR spacer
catatgcttaccctgaataacacgattaag	Protospacer
  . *** *************** *** *.

79. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015730 (Bacillus cereus strain A1 plasmid pBCA1, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccgaatcaatttaaag	Protospacer
  *  .**********.******** ***

80. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015730 (Bacillus cereus strain A1 plasmid pBCA1, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccaaatcgatttaaag	Protospacer
  *  .***************.*** ***

81. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to AP022644 (Bacillus wiedmannii PL1 plasmid pBwiPL1-1 DNA, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccaaatcgatttaaag	Protospacer
  *  .***************.*** ***

82. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to AP022644 (Bacillus wiedmannii PL1 plasmid pBwiPL1-1 DNA, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccgaatcaatttaaag	Protospacer
  *  .**********.******** ***

83. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016596 (Bacillus cereus strain K8 plasmid pBCM301, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccaaatcgatttaaag	Protospacer
  *  .***************.*** ***

84. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016596 (Bacillus cereus strain K8 plasmid pBCM301, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccgaatcaatttaaag	Protospacer
  *  .**********.******** ***

85. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045608 (Bacillus cereus strain SB1 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccaaatcgatttaaag	Protospacer
  *  .***************.*** ***

86. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045608 (Bacillus cereus strain SB1 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccgaatcaatttaaag	Protospacer
  *  .**********.******** ***

87. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010112 (Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccgaatcaatttaaag	Protospacer
  *  .**********.******** ***

88. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010112 (Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-6, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccaaatcgatttaaag	Protospacer
  *  .***************.*** ***

89. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to CP024686 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccgaatcaatttaaag	Protospacer
  *  .**********.******** ***

90. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to CP024686 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccaaatcgatttaaag	Protospacer
  *  .***************.*** ***

91. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NC_018685 (Bacillus thuringiensis MC28 plasmid pMC95, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccaaatcgatttaaag	Protospacer
  *  .***************.*** ***

92. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NC_018685 (Bacillus thuringiensis MC28 plasmid pMC95, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccgaatcaatttaaag	Protospacer
  *  .**********.******** ***

93. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NC_018685 (Bacillus thuringiensis MC28 plasmid pMC95, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccgaatcaatttaaag	Protospacer
  *  .**********.******** ***

94. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NC_018685 (Bacillus thuringiensis MC28 plasmid pMC95, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccaaatcgatttaaag	Protospacer
  *  .***************.*** ***

95. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NC_018685 (Bacillus thuringiensis MC28 plasmid pMC95, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccgaatcaatttaaag	Protospacer
  *  .**********.******** ***

96. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016590 (Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-02, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccgaatcaatttaaag	Protospacer
  *  .**********.******** ***

97. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016590 (Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-02, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccaaatcgatttaaag	Protospacer
  *  .***************.*** ***

98. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NC_011973 (Bacillus cereus Q1 plasmid pBc239, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccgaatcaatttaaag	Protospacer
  *  .**********.******** ***

99. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013276 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-1-360K, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccaaatcgatttaaag	Protospacer
  *  .***************.*** ***

100. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013276 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-1-360K, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccgaatcaatttaaag	Protospacer
  *  .**********.******** ***

101. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020745 (Bacillus mycoides strain Gnyt1 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccaaatcgatttaaag	Protospacer
  *  .***************.*** ***

102. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020745 (Bacillus mycoides strain Gnyt1 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccgaatcaatttaaag	Protospacer
  *  .**********.******** ***

103. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039722 (Bacillus thuringiensis strain BT-59 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccaaatcgatttaaag	Protospacer
  *  .***************.*** ***

104. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039722 (Bacillus thuringiensis strain BT-59 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccgaatcaatttaaag	Protospacer
  *  .**********.******** ***

105. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to CP024689 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-5-125K, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccaaatcgatttaaag	Protospacer
  *  .***************.*** ***

106. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to CP024689 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-5-125K, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccgaatcaatttaaag	Protospacer
  *  .**********.******** ***

107. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to CP046513 (Bacillus cereus strain JHU plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
tgaatgagttatatccaaatcaatttaaag	Protospacer
 .*  .* ***************** ***

108. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040345 (Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
tcaatgatttgtatccaaatcaatttaaag	Protospacer
  *  .****.************** ***

109. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009349 (Bacillus thuringiensis HD1002 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccaaatcgatttaaag	Protospacer
  *  .***************.*** ***

110. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009349 (Bacillus thuringiensis HD1002 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccgaatcaatttaaag	Protospacer
  *  .**********.******** ***

111. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045023 (Bacillus thuringiensis strain JW-1 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccaaatcgatttaaag	Protospacer
  *  .***************.*** ***

112. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045023 (Bacillus thuringiensis strain JW-1 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccgaatcaatttaaag	Protospacer
  *  .**********.******** ***

113. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012103 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-4, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccaaatcgatttaaag	Protospacer
  *  .***************.*** ***

114. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012103 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-4, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ttaatgatttatatccgaatcaatttaaag	Protospacer
  *  .**********.******** ***

115. spacer 7.21|2664762|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015440 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence) position: , mismatch: 8, identity: 0.733

aaacaaatttatatccaaatcaattgaaac	CRISPR spacer
ccagtcatttatatcccaatcaagtgaaaa	Protospacer
  *   ********** ****** *****

116. spacer 7.22|2664828|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048426 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.733

gcaatcgcctgcagccaactcatcgacaca	CRISPR spacer
cgcatcgcctgctgccaacccatcgaccgc	Protospacer
   ********* ******.*******

117. spacer 7.1|2663442|30|NZ_CP040780|CRISPRCasFinder,CRT matches to MT457552 (Shewanella phage Thanatos-1, complete genome) position: , mismatch: 9, identity: 0.7

aaataaccaaatcaataaagctattctaag	CRISPR spacer
ggcagacgaaatcaataaagatattctaca	Protospacer
..  .** ************ ******* .

118. spacer 7.9|2663970|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021876 (Enterococcus wangshanyuanii strain MN05 plasmid unnamed3) position: , mismatch: 9, identity: 0.7

cgccgtcaagttcttctgtttcttcatcgt	CRISPR spacer
gatacggaagttcttctgtttcttcttcga	Protospacer
 ..    ****************** ***

119. spacer 7.13|2664234|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to KY653124 (Staphylococcus phage IME1367_01, complete genome) position: , mismatch: 9, identity: 0.7

tattaagtggtcagatattaagttggacac	CRISPR spacer
gacgaagtggtcaggtattaagttgacgtt	Protospacer
 *. **********.**********.   .

120. spacer 7.17|2664498|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014688 (Acetobacter persici strain TMW2.1084 plasmid pAC1084_1, complete sequence) position: , mismatch: 9, identity: 0.7

gcaaaagcatctccaacaatttgccagcca	CRISPR spacer
taccctgcatctccaccaatttgacagccc	Protospacer
      ********* ******* *****

121. spacer 7.17|2664498|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041069 (Bacillus megaterium strain KNU-01 plasmid pKNU_01_5, complete sequence) position: , mismatch: 9, identity: 0.7

gcaaaagcatctccaacaatttgccagcca	CRISPR spacer
ccaaaagcatcttgaacaatttgctttaag	Protospacer
 ***********. **********.    .

122. spacer 7.17|2664498|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032531 (Bacillus megaterium NCT-2 plasmid pNCT2_3, complete sequence) position: , mismatch: 9, identity: 0.7

gcaaaagcatctccaacaatttgccagcca	CRISPR spacer
ccaaaagcatcttgaacaatttgctttaag	Protospacer
 ***********. **********.    .

123. spacer 7.17|2664498|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023000 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence) position: , mismatch: 9, identity: 0.7

gcaaaagcatctccaacaatttgccagcca	CRISPR spacer
catcatgcatctccatcaatttgccaggac	Protospacer
    * ********* ***********

124. spacer 7.19|2664630|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to MT080601 (UNVERIFIED: Staphylococcus phage vB_SauM_EW72, complete genome) position: , mismatch: 10, identity: 0.667

acccctttatattcaagagtatcaacagtt	CRISPR spacer
taggatttatattcaagagtattaacgcac	Protospacer
     *****************.***.  .

125. spacer 7.19|2664630|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to MT080585 (UNVERIFIED: Staphylococcus phage vB_SauM_EW18, complete genome) position: , mismatch: 10, identity: 0.667

acccctttatattcaagagtatcaacagtt	CRISPR spacer
taggatttatattcaagagtattaacgcac	Protospacer
     *****************.***.  .

126. spacer 7.19|2664630|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to MT080591 (UNVERIFIED: Staphylococcus phage vB_SauM_EW29, complete genome) position: , mismatch: 10, identity: 0.667

acccctttatattcaagagtatcaacagtt	CRISPR spacer
taggatttatattcaagagtattaacgcac	Protospacer
     *****************.***.  .

127. spacer 7.19|2664630|30|NZ_CP040780|CRISPRCasFinder,CRT,PILER-CR matches to MT080589 (UNVERIFIED: Staphylococcus phage vB_SauM_EW26, complete genome) position: , mismatch: 10, identity: 0.667

acccctttatattcaagagtatcaacagtt	CRISPR spacer
taggatttatattcaagagtattaacgcac	Protospacer
     *****************.***.  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1410360 : 1465994

Staphylococcus_phage(26.67%)

tRNA,tail,head,capsid,terminase,portal

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047675481.1\|1410360_1410825_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_005684561.1\|1411030_1411927_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-24	30.6
WP_047675478.1\|1411919_1413179_+	ABC transporter permease	NA	NA	NA	NA
WP_005688746.1\|1413367_1413910_-	exonuclease	A0A1S5SFA9	Streptococcus_phage	8.2e-23	41.0
WP_047675560.1\|1413920_1414679_-	exodeoxyribonuclease III	E3T4M6	Cafeteria_roenbergensis_virus	2.4e-60	47.7
WP_047675474.1\|1415266_1416130_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
WP_005711866.1\|1416167_1418282_+	sodium:proton antiporter	NA	NA	NA	NA
WP_005684568.1\|1418504_1419044_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005688752.1\|1419057_1420146_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.4e-37	46.0
WP_005684570.1\|1420239_1421064_+	ABC transporter permease	Q6GZ02	Mycoplasma_phage	8.9e-13	26.7
WP_005684571.1\|1421053_1421887_+	ABC transporter permease	NA	NA	NA	NA
WP_047675472.1\|1421870_1422944_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_080751207.1\|1422924_1423173_-	hypothetical protein	NA	NA	NA	NA
WP_047675470.1\|1423397_1423664_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_047675468.1\|1423924_1424116_+	hypothetical protein	NA	NA	NA	NA
WP_047675466.1\|1424308_1427101_-	cation-transporting P-type ATPase	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	2.0e-72	29.4
WP_047675463.1\|1427176_1427857_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_047675461.1\|1427890_1429030_-	ABC transporter permease	NA	NA	NA	NA
WP_047675459.1\|1429019_1429754_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.8e-26	34.2
WP_005684581.1\|1430014_1430872_+	TIGR00159 family protein	NA	NA	NA	NA
WP_049171468.1\|1430868_1431966_+	hypothetical protein	NA	NA	NA	NA
WP_005688773.1\|1431994_1433359_+	phosphoglucosamine mutase	NA	NA	NA	NA
WP_014571238.1\|1433782_1435594_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1I9J5	Paramecium_bursaria_Chlorella_virus	2.0e-89	37.2
WP_047675456.1\|1435743_1437549_-	M3 family oligoendopeptidase	NA	NA	NA	NA
WP_005684586.1\|1437622_1438114_+	VanZ family protein	NA	NA	NA	NA
WP_005684587.1\|1438184_1438916_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_047675453.1\|1439385_1440255_+	Flp pilus assembly complex ATPase component	NA	NA	NA	NA
WP_049171465.1\|1440251_1441205_+	type II secretion system protein F	NA	NA	NA	NA
WP_005684590.1\|1441207_1441528_+	type II secretion system protein	NA	NA	NA	NA
WP_005688785.1\|1441524_1441947_+	type II secretion system protein	NA	NA	NA	NA
WP_005688787.1\|1441916_1442228_+	hypothetical protein	NA	NA	NA	NA
WP_014569400.1\|1442187_1442655_+	hypothetical protein	NA	NA	NA	NA
WP_005688791.1\|1442651_1442975_+	hypothetical protein	NA	NA	NA	NA
WP_080751206.1\|1443164_1443392_+	alpha-galactosidase	NA	NA	NA	NA
WP_047675445.1\|1443381_1444395_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_029607003.1\|1444663_1445125_+	hypothetical protein	NA	NA	NA	NA
WP_005684599.1\|1445333_1446698_+	amino acid permease	NA	NA	NA	NA
WP_047675443.1\|1446729_1447494_+	acyl-phosphate glycerol 3-phosphate acyltransferase	NA	NA	NA	NA
WP_005713708.1\|1447490_1448330_+	glycosyl transferase	NA	NA	NA	NA
WP_047675440.1\|1448330_1449287_+	glycosyltransferase family 8 protein	NA	NA	NA	NA
WP_047675437.1\|1449283_1450168_+	acyl-phosphate glycerol 3-phosphate acyltransferase	NA	NA	NA	NA
WP_047675434.1\|1450378_1452673_+	alpha-galactosidase	NA	NA	NA	NA
WP_016380957.1\|1454584_1455286_-	helix-turn-helix domain-containing protein	A0A1W6JQE6	Staphylococcus_phage	4.0e-06	38.0
WP_016380958.1\|1455433_1455712_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_016380959.1\|1455779_1456001_+	hypothetical protein	NA	NA	NA	NA
WP_047675431.1\|1456111_1456303_+	hypothetical protein	NA	NA	NA	NA
WP_016380962.1\|1456351_1456642_+	hypothetical protein	NA	NA	NA	NA
WP_003571964.1\|1456638_1456827_+	hypothetical protein	NA	NA	NA	NA
WP_016382146.1\|1456810_1457623_+	bifunctional DNA primase/polymerase	Q854C1	Mycobacterium_phage	6.7e-13	32.5
WP_016380374.1\|1457626_1459219_+	phage/plasmid primase P4 family protein	A0A1B1P7L5	Bacillus_phage	1.0e-25	27.6
WP_016380373.1\|1459539_1459875_+\|head	phage head closure protein	NA	NA	NA	NA
WP_016380372.1\|1459879_1460065_+	hypothetical protein	NA	NA	NA	NA
WP_016380371.1\|1460061_1460484_+	HNH endonuclease	A0A1J0MFT4	Staphylococcus_phage	8.3e-23	46.7
WP_003574359.1\|1460600_1461071_+\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
WP_016382145.1\|1461067_1462771_+\|terminase	terminase large subunit	A0A2H4JBN3	uncultured_Caudovirales_phage	8.6e-119	42.5
WP_003574365.1\|1462736_1462916_+	hypothetical protein	NA	NA	NA	NA
WP_016382144.1\|1462920_1464099_+\|portal	phage portal protein	A0A2H4JB06	uncultured_Caudovirales_phage	2.2e-60	35.3
WP_016382143.1\|1464088_1465645_+\|capsid	phage major capsid protein	B8R651	Lactobacillus_phage	2.8e-39	26.5
WP_003574397.1\|1465700_1465994_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA

DBSCAN-SWA_2

1549771 : 1587104

Lactobacillus_phage(90.91%)

tail,head,integrase,capsid,terminase,portal,holin

attL 1549693:1549709|attR 1551838:1551854

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1549693:1549709	attL	NA	NA	NA	NA
WP_139041902.1\|1549771_1550956_-\|integrase	tyrosine-type recombinase/integrase	A0A0P0I3D2	Lactobacillus_phage	9.6e-226	99.5
WP_032961050.1\|1551045_1551249_-	hypothetical protein	A0A0P0IQK8	Lactobacillus_phage	2.6e-30	92.5
WP_032961053.1\|1551272_1551698_-	pyridoxamine 5'-phosphate oxidase family protein	A0A0P0I7K6	Lactobacillus_phage	2.4e-62	88.7
WP_080751226.1\|1551831_1552065_+	hypothetical protein	A0A0P0IUZ5	Lactobacillus_phage	3.7e-25	80.6
1551838:1551854	attR	NA	NA	NA	NA
WP_139041903.1\|1552035_1552788_-	hypothetical protein	NA	NA	NA	NA
WP_139041904.1\|1552917_1553523_-	DUF4352 domain-containing protein	A0A0P0IXE0	Lactobacillus_phage	1.7e-77	98.5
WP_139041946.1\|1553581_1553965_-	hypothetical protein	A0A1B0Y834	Lactobacillus_phage	3.6e-57	83.5
WP_139041947.1\|1554190_1554589_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_129301732.1\|1554649_1555084_-	helix-turn-helix transcriptional regulator	A0A0B5CYL9	Listeria_phage	3.0e-20	34.3
WP_139041905.1\|1555219_1555462_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_139041906.1\|1555625_1556144_-	hypothetical protein	NA	NA	NA	NA
WP_138117704.1\|1556474_1557023_+	hypothetical protein	A0A1B0YE60	Lactobacillus_phage	2.7e-98	98.4
WP_015764912.1\|1557001_1557232_+	helix-turn-helix domain-containing protein	A0A1B0Y6A3	Lactobacillus_phage	5.5e-37	98.6
WP_119182909.1\|1557235_1557364_+	hypothetical protein	A0A0P0IQL2	Lactobacillus_phage	4.7e-14	92.5
WP_032964578.1\|1557375_1557594_+	hypothetical protein	NA	NA	NA	NA
WP_047676147.1\|1557777_1558653_+	recombinase RecT	A0A1X9I5N6	Streptococcus_phage	9.7e-58	51.3
WP_032964576.1\|1558672_1559437_+	phage protein	A0A0P0IZH9	Lactobacillus_phage	4.0e-76	54.0
WP_032964574.1\|1559452_1560418_+	DnaD domain protein	A0A1B0Y2R2	Lactobacillus_phage	2.2e-135	93.5
WP_032964572.1\|1560544_1560925_-	DUF2513 domain-containing protein	A0A0P0IV09	Lactobacillus_phage	1.5e-63	95.2
WP_032964570.1\|1561254_1561470_+	helix-turn-helix transcriptional regulator	A0A0P0IJY1	Lactobacillus_phage	2.6e-20	67.1
WP_047676140.1\|1561466_1561916_+	hypothetical protein	A0A0P0ID70	Lactobacillus_phage	1.3e-66	92.6
WP_048481921.1\|1561962_1562217_+	hypothetical protein	A0A0P0IQP0	Lactobacillus_phage	1.7e-39	97.6
WP_003607027.1\|1562213_1562579_+	endodeoxyribonuclease	A0A0P0HRU0	Lactobacillus_phage	1.8e-66	100.0
WP_015764333.1\|1562591_1563056_+	hypothetical protein	A0A0P0IXF6	Lactobacillus_phage	7.2e-20	98.0
WP_010489671.1\|1563067_1563253_+	hypothetical protein	Q6J1V0	Lactobacillus_phage	1.3e-25	90.2
WP_047676133.1\|1563249_1563798_+	DUF1642 domain-containing protein	A0A2D1GPC7	Lactobacillus_phage	7.6e-61	66.7
WP_005711376.1\|1564018_1564240_+	hypothetical protein	A0A0P0IXA5	Lactobacillus_phage	2.1e-09	51.4
WP_100255554.1\|1564143_1564347_-	hypothetical protein	NA	NA	NA	NA
WP_005711378.1\|1564448_1564877_+	hypothetical protein	NA	NA	NA	NA
WP_005686948.1\|1565232_1566093_+	hypothetical protein	NA	NA	NA	NA
WP_048486574.1\|1566633_1567782_+	phage protein	A0A0P0I3G0	Lactobacillus_phage	2.1e-217	96.1
WP_048486575.1\|1567774_1568098_+	ribonucleoside-diphosphate reductase	A0A0P0IJY9	Lactobacillus_phage	1.1e-56	97.2
WP_139041907.1\|1568606_1569860_+\|terminase	PBSX family phage terminase large subunit	A0A0P0I3B0	Lactobacillus_phage	2.2e-249	99.5
WP_139041908.1\|1569864_1571292_+\|portal	phage portal protein	A0A0P0IJV3	Lactobacillus_phage	3.3e-249	93.5
WP_139041948.1\|1571257_1572250_+\|head	phage head morphogenesis protein	A0A0P0ID43	Lactobacillus_phage	5.1e-180	96.7
WP_139041909.1\|1572374_1573031_+	DUF4355 domain-containing protein	A0A0P0ID10	Lactobacillus_phage	3.3e-58	80.0
WP_139041910.1\|1573046_1574060_+\|capsid	capsid protein	A0A0A7RVZ1	Clostridium_phage	1.5e-22	26.2
WP_138117729.1\|1574287_1574662_+\|head,tail	phage head-tail connector protein	A0A0P0IZF6	Lactobacillus_phage	2.2e-59	92.7
WP_138117730.1\|1574666_1574969_+	hypothetical protein	A0A0P0HRN0	Lactobacillus_phage	4.5e-47	89.0
WP_003602752.1\|1574965_1575331_+	hypothetical protein	A0A0P0IUZ3	Lactobacillus_phage	3.1e-58	97.5
WP_016374716.1\|1575331_1575736_+	DUF3168 domain-containing protein	A0A0P0I3C8	Lactobacillus_phage	6.2e-68	94.0
WP_139041911.1\|1575747_1576350_+\|tail	phage tail protein	A0A0P0ID88	Lactobacillus_phage	2.3e-98	91.5
WP_016380684.1\|1576436_1576769_+	phage protein	A0A0P0IQQ6	Lactobacillus_phage	1.8e-52	99.1
WP_139041912.1\|1576873_1577227_+	hypothetical protein	A0A0P0I7N9	Lactobacillus_phage	3.8e-53	94.0
WP_139041913.1\|1577219_1580309_+	tape measure protein	A0A0P0IJD2	Lactobacillus_phage	7.5e-254	88.7
WP_139041914.1\|1580309_1582301_+\|tail	phage tail protein	Q7Y4B1	Lactobacillus_phage	3.8e-267	73.1
WP_139041915.1\|1582301_1584737_+\|tail	phage tail protein	Q6J1X1	Lactobacillus_phage	0.0e+00	74.6
WP_139041916.1\|1584738_1585029_+	hypothetical protein	Q3L0S1	Lactobacillus_rhamnosus_Lc-Nu-like_prophage	4.5e-20	48.9
WP_139041917.1\|1585021_1585153_+	XkdX family protein	A0A0P0HRS7	Lactobacillus_phage	3.0e-08	60.5
WP_003581984.1\|1585208_1585484_+	hypothetical protein	A0A0P0IZF9	Lactobacillus_phage	7.5e-49	100.0
WP_139041918.1\|1585498_1585912_+\|holin	phage holin	A0A0N7IR91	Lactobacillus_phage	2.9e-44	94.9
WP_032964517.1\|1585922_1587104_+	LysM peptidoglycan-binding domain-containing protein	A0A0P0HRN9	Lactobacillus_phage	2.4e-208	91.6

DBSCAN-SWA_3

2436253 : 2499424

Lactococcus_phage(12.5%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080974579.1\|2436253_2437717_-\|transposase	IS5-like element ISLrh2 family transposase	NA	NA	NA	NA
WP_019863889.1\|2437834_2439253_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_047677291.1\|2439679_2441755_-	1,4-beta-N-acetylmuramidase	X2CXX8	Lactobacillus_phage	5.7e-08	30.3
WP_047677292.1\|2441879_2443367_-	glycosyl transferase	NA	NA	NA	NA
WP_047677293.1\|2443641_2444682_+	acyltransferase	NA	NA	NA	NA
WP_047677294.1\|2444793_2445786_-	glycosyltransferase family 2 protein	A8CG95	Salmonella_phage	2.2e-42	33.7
WP_005714653.1\|2445856_2446999_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A0N9R0B2	Chrysochromulina_ericina_virus	1.5e-26	30.2
WP_047677295.1\|2447205_2448060_-	hypothetical protein	NA	NA	NA	NA
WP_005692858.1\|2448306_2449707_-	sugar transferase	NA	NA	NA	NA
WP_005712868.1\|2449824_2450565_-	glycosyl transferase	A0A2K9L4Z6	Tupanvirus	2.9e-10	41.3
WP_005715245.1\|2450587_2451343_-	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	2.9e-10	28.2
WP_047677296.1\|2451425_2452361_-	NAD-dependent epimerase/dehydratase family protein	A0A1V0SKV4	Klosneuvirus	1.1e-35	33.2
WP_005687206.1\|2452798_2453461_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_005687204.1\|2453476_2454121_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_047677297.1\|2454122_2454947_-	glutamate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005687200.1\|2455140_2455878_-	amino acid ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	3.8e-15	28.8
WP_047677298.1\|2456185_2457145_-	hypothetical protein	NA	NA	NA	NA
WP_047677299.1\|2457165_2457609_-	hypothetical protein	NA	NA	NA	NA
WP_047677300.1\|2457865_2458318_-	transcriptional repressor	NA	NA	NA	NA
WP_005687187.1\|2458426_2458540_+	putative metal homeostasis protein	NA	NA	NA	NA
WP_005687185.1\|2458740_2459343_-	guanylate kinase	U5J9X2	Bacillus_phage	8.0e-11	29.7
WP_047677302.1\|2459452_2459860_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_047677304.1\|2460255_2461455_-	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	1.4e-19	46.4
WP_080751278.1\|2461574_2461814_+	hypothetical protein	NA	NA	NA	NA
WP_048488273.1\|2461756_2463028_-\|tRNA	tyrosine--tRNA ligase	A0A1L2CUL7	Pectobacterium_phage	9.4e-86	43.7
WP_005692835.1\|2463433_2464372_-	cation transporter	NA	NA	NA	NA
WP_005687178.1\|2464546_2464882_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_047677310.1\|2465032_2465962_+	FAD:protein FMN transferase	NA	NA	NA	NA
WP_047677312.1\|2466075_2467854_-	glycoside hydrolase family 13 protein	NA	NA	NA	NA
WP_047677315.1\|2467875_2470287_-	glycogen/starch/alpha-glucan phosphorylase	Q8B3H5	Iris_mild_mosaic_virus	7.6e-12	39.8
WP_049173484.1\|2470434_2471880_-	glycogen synthase GlgA	NA	NA	NA	NA
WP_005687171.1\|2471872_2473042_-	glucose-1-phosphate adenylyltransferase subunit GlgD	NA	NA	NA	NA
WP_064613004.1\|2473038_2474181_-	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA
WP_014571465.1\|2474210_2476274_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA
WP_024305667.1\|2476634_2477666_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA
WP_047677320.1\|2477817_2478720_-	sortase	NA	NA	NA	NA
WP_005687159.1\|2479093_2479924_-	YitT family protein	M1Q1P6	Streptococcus_phage	1.1e-18	28.2
WP_047677322.1\|2480010_2481957_-	fructose-bisphosphatase class III	NA	NA	NA	NA
WP_005687154.1\|2482259_2482661_-	Spx/MgsR family RNA polymerase-binding regulatory protein	NA	NA	NA	NA
WP_047677325.1\|2483302_2485453_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A0A8J958	Klebsiella_phage	5.8e-120	36.5
WP_024129339.1\|2485862_2486627_-	tyrosine protein phosphatase	NA	NA	NA	NA
WP_005687147.1\|2486783_2487677_+	transcriptional regulator	NA	NA	NA	NA
WP_047677329.1\|2487775_2488801_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.0e-71	43.6
WP_064657743.1\|2489076_2490117_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_005688202.1\|2490619_2491840_+\|transposase	IS21 family transposase	A0A059NT83	Lactococcus_phage	1.3e-100	47.8
WP_005688200.1\|2491847_2492585_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	3.7e-58	48.8
WP_005688198.1\|2492890_2493559_-	sugar transferase	NA	NA	NA	NA
WP_005688196.1\|2494352_2495342_-	glycosyltransferase	NA	NA	NA	NA
WP_005688194.1\|2495562_2496564_-	glycosyl transferase	NA	NA	NA	NA
WP_080974579.1\|2497960_2499424_-\|transposase	IS5-like element ISLrh2 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

2780425 : 2843299

Bacillus_phage(18.18%)

portal,protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047677366.1\|2780425_2781607_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	C1KFS0	Lactobacillus_virus	1.2e-98	48.8
WP_005686167.1\|2782614_2783523_-	FMN-binding protein	NA	NA	NA	NA
WP_005713555.1\|2783810_2785709_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_005686164.1\|2785881_2786325_+	hypothetical protein	NA	NA	NA	NA
WP_005686161.1\|2786321_2786909_+	Gx transporter family protein	NA	NA	NA	NA
WP_095593741.1\|2786898_2787861_+	polyprenyl synthetase family protein	A0A1V0SE37	Indivirus	2.8e-05	24.8
WP_047677372.1\|2788305_2788803_+	hypothetical protein	NA	NA	NA	NA
WP_047677374.1\|2788952_2789744_+	metallophosphoesterase family protein	NA	NA	NA	NA
WP_047677376.1\|2790011_2790206_-	hypothetical protein	NA	NA	NA	NA
WP_047677380.1\|2791517_2791703_-	hypothetical protein	NA	NA	NA	NA
WP_047677382.1\|2791856_2792732_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	1.2e-18	31.1
WP_047677384.1\|2792725_2793964_-	hypothetical protein	NA	NA	NA	NA
WP_049170292.1\|2793953_2795069_-	hypothetical protein	NA	NA	NA	NA
WP_029607565.1\|2795527_2796214_-	NAD(P)-binding domain-containing protein	NA	NA	NA	NA
WP_005713579.1\|2796210_2797266_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_005686136.1\|2797494_2798034_-	NYN domain-containing protein	NA	NA	NA	NA
WP_005692356.1\|2798034_2798817_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_005713584.1\|2798788_2799217_-	Mini-ribonuclease 3	NA	NA	NA	NA
WP_047677389.1\|2799213_2800620_-\|tRNA	cysteine--tRNA ligase	A0A1V0SAQ2	Catovirus	3.0e-53	31.1
WP_047677392.1\|2800761_2801637_-	Rgg/GadR/MutR family transcriptional regulator	NA	NA	NA	NA
WP_014570036.1\|2801933_2802296_+	hypothetical protein	NA	NA	NA	NA
WP_047677394.1\|2802623_2804018_-	FAD-binding protein	NA	NA	NA	NA
WP_005686125.1\|2804142_2804712_-	hypothetical protein	NA	NA	NA	NA
WP_107773226.1\|2805364_2806258_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	7.4e-37	33.3
WP_047678842.1\|2806209_2806746_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_047678740.1\|2806824_2808318_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_047678750.1\|2808868_2809699_-\|protease	YhfC family intramembrane metalloprotease	NA	NA	NA	NA
WP_047678753.1\|2809712_2810729_-	membrane protein	NA	NA	NA	NA
WP_049170284.1\|2810725_2811112_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_047678758.1\|2811304_2812621_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_095593742.1\|2812968_2813631_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_005686113.1\|2813722_2814838_-	PIN/TRAM domain-containing protein	NA	NA	NA	NA
WP_005686111.1\|2814858_2816223_-	DNA repair protein RadA	NA	NA	NA	NA
WP_047678761.1\|2816242_2816782_-	dUTP diphosphatase	J9PV85	Bacillus_phage	8.9e-38	48.6
WP_080981742.1\|2816921_2817353_-	hypothetical protein	NA	NA	NA	NA
WP_005686109.1\|2817549_2817840_+	N-acetyltransferase	NA	NA	NA	NA
WP_047677400.1\|2818133_2819453_+	C1 family peptidase	R4TV59	Phaeocystis_globosa_virus	8.8e-63	35.5
WP_047677403.1\|2819597_2820944_+	C1 family peptidase	R4TV59	Phaeocystis_globosa_virus	1.3e-72	38.5
WP_047677407.1\|2821160_2822261_+	ABC transporter	NA	NA	NA	NA
WP_095593671.1\|2822260_2823454_+	ABC transporter permease	NA	NA	NA	NA
WP_047677411.1\|2823467_2824343_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.1e-12	25.9
WP_047677413.1\|2824494_2826549_+\|portal	portal protein	A7K9V6	Acanthocystis_turfacea_chlorella_virus	7.3e-64	33.1
WP_047677415.1\|2826756_2829387_-	pyruvate, phosphate dikinase	H8YJB7	Vibrio_phage	8.1e-84	38.7
WP_072137620.1\|2829686_2830274_-	CBS domain-containing protein	NA	NA	NA	NA
WP_005692313.1\|2830445_2831117_-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA
WP_047677417.1\|2831274_2832393_+	bacitracin ABC transporter permease	NA	NA	NA	NA
WP_005686095.1\|2832411_2832696_+	chromosome partitioning protein ParB	NA	NA	NA	NA
WP_047677419.1\|2832941_2834057_-	lactate oxidase	NA	NA	NA	NA
WP_005716508.1\|2834219_2834429_-	CsbD family protein	NA	NA	NA	NA
WP_019863889.1\|2834523_2835942_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_047677421.1\|2836127_2837318_-	phosphopentomutase	NA	NA	NA	NA
WP_047677423.1\|2837314_2838544_-	MFS transporter	NA	NA	NA	NA
WP_047677425.1\|2838571_2839315_-	nucleoside phosphorylase	NA	NA	NA	NA
WP_047677427.1\|2839307_2840525_-	MFS transporter	NA	NA	NA	NA
WP_047677429.1\|2840652_2841831_+	sugar diacid utilization regulator	NA	NA	NA	NA
WP_019863889.1\|2841880_2843299_-\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

2864005 : 2893575

Bacillus_phage(50.0%)

protease,bacteriocin,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_047677458.1\|2864005_2864296_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_049171123.1\|2864423_2865506_+	aldo/keto reductase	NA	NA	NA	NA
WP_005686876.1\|2865806_2867162_-	threonine/serine exporter family protein	NA	NA	NA	NA
WP_049171125.1\|2867341_2867752_-	hypothetical protein	NA	NA	NA	NA
WP_139041943.1\|2867812_2869192_-\|bacteriocin	bacteriocin secretion accessory protein	NA	NA	NA	NA
WP_139041944.1\|2869204_2871388_-	peptide cleavage/export ABC transporter	W8CYL7	Bacillus_phage	1.2e-37	25.5
WP_005684427.1\|2873292_2873763_-	transcription elongation factor GreA	NA	NA	NA	NA
WP_029607296.1\|2874690_2875842_-	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_015764970.1\|2875810_2876011_-	hypothetical protein	NA	NA	NA	NA
WP_047676242.1\|2876065_2878477_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_005684433.1\|2879965_2880352_-	HxlR family transcriptional regulator	NA	NA	NA	NA
WP_047678343.1\|2882302_2883598_+	GHKL domain-containing protein	NA	NA	NA	NA
WP_047678346.1\|2883602_2884391_+	LytR domain-containing response regulator	NA	NA	NA	NA
WP_080751332.1\|2885126_2885312_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_080751328.1\|2886489_2886690_-	hypothetical protein	NA	NA	NA	NA
WP_047678349.1\|2886738_2886984_-	hypothetical protein	NA	NA	NA	NA
WP_047678352.1\|2887232_2887532_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_047678355.1\|2887709_2887868_-\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_080751329.1\|2888021_2888249_+	hypothetical protein	NA	NA	NA	NA
WP_049171132.1\|2888336_2888522_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_047678362.1\|2888581_2888767_-	hypothetical protein	NA	NA	NA	NA
WP_005711129.1\|2889153_2889339_-	hypothetical protein	NA	NA	NA	NA
WP_047678365.1\|2889388_2890195_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_047678368.1\|2890515_2890956_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_005686841.1\|2891010_2892438_-	MFS transporter	A0A0M3UL24	Mycobacterium_phage	6.1e-33	26.7
WP_005692222.1\|2892610_2892943_-	hypothetical protein	NA	NA	NA	NA
WP_047678371.1\|2893233_2893575_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040780

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection