CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP031172	Lactobacillus brevis strain UCCLBBS124 plasmid pUCCLBBS124_C, complete sequence	0 crisprs	NA	0	0
NZ_CP031170	Lactobacillus brevis strain UCCLBBS124 plasmid pUCCLBBS124_A, complete sequence	0 crisprs	NA	0	0
NZ_CP031173	Lactobacillus brevis strain UCCLBBS124 plasmid pUCCLBBS124_D, complete sequence	0 crisprs	NA	0	0
NZ_CP031169	Lactobacillus brevis strain UCCLBBS124 chromosome, complete genome	1 crisprs	cas3,csa3,DEDDh,DinG,WYL	1	5
NZ_CP031171	Lactobacillus brevis strain UCCLBBS124 plasmid pUCCLBBS124_B, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP031169_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031169_1

1173083-1173415

Orphan

I-E,II-B

Consensus_repeat	Method
GTATTCCCCACGGGTGTGGGGGTGATCCT	PILER-CR
GTATTCCCCACGGGTGTGGGGGTGATCC	CRISPRCasFinder
GTATTCCCCACGGGTGTGGGGGTGATNC	CRT

5 spacers

The CRISPR arrays of NZ_CP031169_1

>merge|NZ_CP031169|1|1173083-1173415|PILER-CR,CRISPRCasFinder,CRT
GTATTCCCCACGGGTGTGGGGGTGATCCTGATAATCAAGTTTACGTGAGAGTTAAGGGTGCGTATTCCCCACGGGTGTGGGGGTGATCCTCATCATATCCCACCCTCATATCCATTAATGGGGTATTCCCCACGGGTGTGGGGGTGATCCCGTTCTCCGCTAATCTAGCCGTCTATGATACTAGTATTCCCCACGGGTGTGGGGGTGATCCTTAATGGATAAAGTCAAAGCTGCTGAAAGCGAGGTATTCCCCACGGGTGTGGGGGTGATTCCGGCCAATGATGTTGAATTGCGCTCGGGTGTTAGTTTTCCCCACATGTGTGTGGGCACTAC

>NZ_CP031169|1|1|1173083-1173294|PILER-CR
GTATTCCCCACGGGTGTGGGGGTGATCCT	GATAATCAAGTTTACGTGAGAGTTAAGGGTGC
GTATTCCCCACGGGTGTGGGGGTGATCCT	CATCATATCCCACCCTCATATCCATTAATGGG
GTATTCCCCACGGGTGTGGGGGTGATCCC	GTTCTCCGCTAATCTAGCCGTCTATGATACTA
GTATTCCCCACGGGTGTGGGGGTGATCCT

>NZ_CP031169|1|1|1173083-1173415|CRISPRCasFinder
GTATTCCCCACGGGTGTGGGGGTGATCC	TGATAATCAAGTTTACGTGAGAGTTAAGGGTGC
GTATTCCCCACGGGTGTGGGGGTGATCC	TCATCATATCCCACCCTCATATCCATTAATGGG
GTATTCCCCACGGGTGTGGGGGTGATCC	CGTTCTCCGCTAATCTAGCCGTCTATGATACTA
GTATTCCCCACGGGTGTGGGGGTGATCC	TTAATGGATAAAGTCAAAGCTGCTGAAAGCGAG
GTATTCCCCACGGGTGTGGGGGTGATTC	CGGCCAATGATGTTGAATTGCGCTCGGGTGTTA
GTTTTCCCCACATGTGTGTGGGCACTAC

>NZ_CP031169|1|1|1173083-1173415|CRT
GTATTCCCCACGGGTGTGGGGGTGATCC	TGATAATCAAGTTTACGTGAGAGTTAAGGGTGC
GTATTCCCCACGGGTGTGGGGGTGATCC	TCATCATATCCCACCCTCATATCCATTAATGGG
GTATTCCCCACGGGTGTGGGGGTGATCC	CGTTCTCCGCTAATCTAGCCGTCTATGATACTA
GTATTCCCCACGGGTGTGGGGGTGATCC	TTAATGGATAAAGTCAAAGCTGCTGAAAGCGAG
GTATTCCCCACGGGTGTGGGGGTGATTC	CGGCCAATGATGTTGAATTGCGCTCGGGTGTTA
GTTTTCCCCACATGTGTGTGGGCACTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031169.1\|WP_139565971.1\|1178260_1178806_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP031169.1\|WP_139566186.1\|1175849_1176335_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|223532
NZ_CP031169.1\|WP_039104714.1\|1173494_1173848_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384
NZ_CP031169.1\|WP_039104715.1\|1170991_1172431_+\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP031169.1\|WP_039104713.1\|1179010_1179433_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378454
NZ_CP031169.1\|WP_035464980.1\|1181577_1182402_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP031169.1\|WP_080769672.1\|1169809_1170289_-\|LytTR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197918
NZ_CP031169.1\|WP_011667631.1\|1176700_1178167_+\|catalase	unknown	unknown	gnl\|CDD\|365942
NZ_CP031169.1\|WP_024525303.1\|1175110_1175761_+\|nitrobenzoate-reductase	unknown	unknown	gnl\|CDD\|380313
NZ_CP031169.1\|WP_139565969.1\|1167280_1168714_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP031169.1\|WP_039104711.1\|1179511_1180774_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|181958
NZ_CP031169.1\|WP_039104721.1\|1166192_1166597_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384
NZ_CP031169.1\|WP_021742599.1\|1172560_1172872_+\|HicB-family-protein	unknown	unknown	gnl\|CDD\|374224
NZ_CP031169.1\|WP_021742610.1\|1173969_1174977_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381305
NZ_CP031169.1\|WP_039104716.1\|1169366_1169813_-\|DUF3021-domain-containing-protein	unknown	unknown	gnl\|CDD\|378668
NZ_CP031169.1\|WP_039104720.1\|1166686_1167172_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP031169.1\|WP_080662457.1\|1170417_1170915_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133380
NZ_CP031169.1\|WP_035465701.1\|1180899_1181502_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP031169.1\|WP_139565970.1\|1168700_1169306_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
NZ_CP031169.1\|WP_039104722.1\|1165347_1166184_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|181334

Protein	Function_ID	Function_description	E-value
NZ_CP031169.1\|WP_139565971.1\|1178260_1178806_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	1.62873e-23
NZ_CP031169.1\|WP_139566186.1\|1175849_1176335_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|223532	COG0456, RimI, Acetyltransferases [General function prediction only].	1.20902e-11
NZ_CP031169.1\|WP_039104714.1\|1173494_1173848_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	4.16324e-40
NZ_CP031169.1\|WP_039104715.1\|1170991_1172431_+\|multidrug-efflux-MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	3.37654e-89
NZ_CP031169.1\|WP_039104713.1\|1179010_1179433_-\|hypothetical-protein	gnl\|CDD\|378454	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport. This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily.	0.00679351
NZ_CP031169.1\|WP_035464980.1\|1181577_1182402_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	5.32735e-10
NZ_CP031169.1\|WP_080769672.1\|1169809_1170289_-\|LytTR-family-transcriptional-regulator	gnl\|CDD\|197918	smart00850, LytTR, LytTr DNA-binding domain. This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.	5.54342e-19
NZ_CP031169.1\|WP_011667631.1\|1176700_1178167_+\|catalase	gnl\|CDD\|365942	pfam00199, Catalase, Catalase.	0
NZ_CP031169.1\|WP_024525303.1\|1175110_1175761_+\|nitrobenzoate-reductase	gnl\|CDD\|380313	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB. Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a source of reducing equivalents in an obligatory two-election transfer mechanism. The enzyme is typically a homodimer. Mycobacterium smegmatis nitroreductase NfnB plays a role in resistance to benzothiazinone.	3.94562e-44
NZ_CP031169.1\|WP_139565969.1\|1167280_1168714_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.72187e-47
NZ_CP031169.1\|WP_039104711.1\|1179511_1180774_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|181958	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.	5.21543e-61
NZ_CP031169.1\|WP_039104721.1\|1166192_1166597_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	2.81732e-44
NZ_CP031169.1\|WP_021742599.1\|1172560_1172872_+\|HicB-family-protein	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	1.83833e-05
NZ_CP031169.1\|WP_021742610.1\|1173969_1174977_+\|aldo/keto-reductase	gnl\|CDD\|381305	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins. Escherichia coli YajO is the prototype of this family. It is an uncharacterized aldo/keto reductase family oxidoreductase.	6.0695e-163
NZ_CP031169.1\|WP_039104716.1\|1169366_1169813_-\|DUF3021-domain-containing-protein	gnl\|CDD\|378668	pfam11457, DUF3021, Protein of unknown function (DUF3021). This is a bacterial family of uncharacterized proteins.	2.23902e-27
NZ_CP031169.1\|WP_039104720.1\|1166686_1167172_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	8.72488e-09
NZ_CP031169.1\|WP_080662457.1\|1170417_1170915_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133380	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	3.44353e-20
NZ_CP031169.1\|WP_035465701.1\|1180899_1181502_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.02248e-05
NZ_CP031169.1\|WP_139565970.1\|1168700_1169306_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	5.70003e-27
NZ_CP031169.1\|WP_039104722.1\|1165347_1166184_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|181334	PRK08263, PRK08263, short chain dehydrogenase; Provisional.	1.26898e-86

>NZ_CP031169.1|WP_021742599.1|1172560_1172872_+|HicB-family-protein
MTKANIVTYPAVFHDNEAGGYIVTFPDIEEAMTSGQTLGESLVNATTVLGQTLHHHPMVLPTATTITELMHQYPMAFIQFVAVDLDQVIEHAVPTDQADLQLT
>NZ_CP031169.1|WP_039104715.1|1170991_1172431_+|multidrug-efflux-MFS-transporter
MTTDITGKPYNRAMMVTILLIGTFLNVLNQTVLATAFPDLMKAFSINATTVQWLTTGFLLVNGIMIPLSAWLSTQFNSKWLWISAMTIFAGGTILCWAAPSFAMLLSGRLIQAVGVGVAMPLLQTIMFSIFPPEQRGSAMGLVGIAVGVGPAIGPTLAGFVVDNGSWRNIFGIMIPIAFVIILLSFFFMRPVIENRRTHLDVLSLILSSIGFGSVLYGFSTVGQNGWTDSTVITALAVGVIFVAVFAVRQLTISEPFLELRVFAKGQFTVATILGAIANTAMTGAELVLPMYLQIVRGQSALISGLTLLPGAIVIALMNPITGRIVDRIGGRELSIIGLACLTLGTLPLCFLQSDTALWWIILVYAVRMLGVSMVLMPITTVGMNALDRSLIAHGTAVNNTVKQIFSSIGTALVVSIMANVTKGNMPNVRLYIKQPTLLHHLIMNANLDGYTAAFIVTAAMSFLGFLMAFLVKRSTKKA
>NZ_CP031169.1|WP_080662457.1|1170417_1170915_-|MerR-family-transcriptional-regulator
MCGKLRLLICKGDLTVTVTDNFSNWLNLIQQVSQPEGITLGTSDLVKATGVPASQLRYWVEQGYIKPIDVPNERSRKFSYRVVFRVRAIKYFLDHGYTLSAAMDNVNQFRNLDIQLQRILTDHLTDLQLHEDGQIDISLGTVQDGQELLGLTIKDGSSQFWTKKV
>NZ_CP031169.1|WP_080769672.1|1169809_1170289_-|LytTR-family-transcriptional-regulator
MLNLSERQAITMHVTFNLKASFIPPFITINAPAETPELQHLAANISQLTNSQLIAGISPRGTRELVPVNQIIRIHTDAKHVVMETKATTYTLPQRIYQLKQLLPSDLFLQLSSGELVNRQHIRHFSLTPSGLYQVLLSTGATTFVSRRCMQQIRKEFLK
>NZ_CP031169.1|WP_039104716.1|1169366_1169813_-|DUF3021-domain-containing-protein
MKRLGILTSGAFLGLSIGFLCALFFSLTNHATTFMPSSPDFVAHFSSNTMATLAAAGLWAAIGLLFGLTSLIFFNEHWSIARQTIWHFGLSYLGFTPLAILAGWFPLNVTWLLLYTLIFIGIYLVIWTYSMLRARKTVQHLNDTLSHH
>NZ_CP031169.1|WP_139565970.1|1168700_1169306_+|NAD(P)H-dependent-oxidoreductase
MMQINLVLGSSREKSLGRRVFNYLKNQQNDFEQQSAVHLNFLAVGDYQLPFFSEDVAPMNNQDRHLPAQQQAWLDDMEQASGYIFITPEYNHSFPAVLKNGLDYLAFQTAKKPALIMSYSDNARAGQFGGVDLTPVLTRLGMTVLPPLVGIGNVQKNFNEAGEFLENAPSKDFYHQKLQQTVEKIAFYSRLFADNPFTPQS
>NZ_CP031169.1|WP_139565969.1|1167280_1168714_+|MFS-transporter
MKTQAIRWWVLACIGIMTFMDDLDASIVNVALPVINRALAINMGVAELIVSVYLITICVFLLPFGRLGDTFGKVRVFKWGMWLFVLGSLGCGLSPNIISLLLCRLIQGLGAAMTMSTNNGIITESFPINERGRALGWIGSFVALGMIAGPCIGGLLLSFLPWESIFWINVPIGLLLMGLGHAVLTTETGSDDRPVFDWLGSGLVGIGISGFFGYLYAGQQLGYGQPLLVGLLAVAIIATMVFILYEIKCQQPLLDLKIFRKTDFTVGVGTALLVFVANNFYMVLTPFYLENAKVIGASVAGLIMMILPVVQVLMAPIAGRIADNQGPFKLCLTGLLIILSAQIGFVLINQQTPLTLVGGLIGLLGLGNALFQSPNNALIMGAVEQTQLGVAGSVNALSRNIGMVLGNALATSLLFVIMSALTRSKVTNFDGHFKRAFITGQSWVYLLGSLLVLLAIGLVSFNTWKNKKMEALSDDAN
>NZ_CP031169.1|WP_039104720.1|1166686_1167172_-|MarR-family-transcriptional-regulator
MISSANAKNLMACISQLLTQDTTVDQEKKWMLSQVATDTALTATIKALRTADFHTIATISTLTPAYLKSLPEKTGLSQPTISRMMTRLSHHDLVEKYRTVTNSKDILVRLTPKGTQIAEIHAQLDQRILNNVAQVLEPYSQTEVTTTIQILQEIAKIDVNR
>NZ_CP031169.1|WP_039104721.1|1166192_1166597_-|MerR-family-transcriptional-regulator
MEYTMSDVCQKFNLSEYTLRYYDKINLIPGVYRNEQNRRVFTEDAVGWLQFVIALRSTGMPIADVKKYIALTTTTDDSTIQARLTMLQKQAAKVDSQIADMHKQRQIIADKINHYQQVMKTAPDPTKKSYQRWV
>NZ_CP031169.1|WP_039104722.1|1165347_1166184_+|SDR-family-NAD(P)-dependent-oxidoreductase
MTKTWFVTGSSRGLGRAIVENSLSNGDNVVATARNTASLADLAAEYGEHIYPLSLDVTDVDAVDAAIQMAIQHFGTIDVLVNNAGFADMDSVEEMPLATFKAQMDTDFYGTLYTIRAVLPTMREAKAGRIINISSIGGRIGGAGLSAYQSAKFAVNGLSEVLVHEVQSFGIQVTTVEPGGMRTEWGGDSMKAASSDLYKDSVGQAISMIHDQWHHAGDRYVSEPDKVAAAIHTLSEMPQAPVHLLIGKDAEQAAQQNAETLAKNDMANRSLTESTGNR
>NZ_CP031169.1|WP_039104714.1|1173494_1173848_-|MerR-family-transcriptional-regulator
MKIETVAQRYHISTSAIRYYEQQGLIGPINRINGIRDFNTTDLERMDFILCVKQCGMTIKQMKQFIATYEQGDSTLRERLAILQAQLSASEEQRTTLTRSINHLKQKIGDIRIRLAE
>NZ_CP031169.1|WP_021742610.1|1173969_1174977_+|aldo/keto-reductase
MQYTKLGHTEIMASKICVGAMSFGQPGTMHDWTLDYPASERVIGHALSLGINFFDTANGYSAGTSETYLGRALKAQRVARDQVVLASKVYFNPGRLSAKAIHHEIDGTLKRLGTDYLDLYIIHRFDYDTPIEETMAALNELVTAGKVRAIGASAMYGYQFNNMQQVAKDRGWAQFQTMENHYNLLYREDERELIPICQQQGVSLMPYSPLAAGHLSHSAWQVDTLRSQTDRVAMGKYDRTETEDQRIVARVAELAHKYQVSMTQIALAWQWAKGVAAPIVGSTKTSHLDEAVAALSVKLTTADIDYLEDLYRPHPIVGALDHNPAAGTILIDQKK
>NZ_CP031169.1|WP_024525303.1|1175110_1175761_+|nitrobenzoate-reductase
MDVLEAIKDRHATRAFDDKAIDDQNLTAIVTDAQRTPSWGNSQPWEVYIATGKSLEQIKSRYAAAAQAGVTEAADLAKAHRGDFSTMANQNMGHWVGTFRPIIEADPTTYWDSRENLYRAPAIAYLVLGQNPNSWSIYDLGAFSQTLSLAATARGVQSLSSYELVKYPDILRQELAVPTDRTIAMGIALGYEKPDKVLNQFRTDRVATQQILHIQH
>NZ_CP031169.1|WP_139566186.1|1175849_1176335_+|GNAT-family-N-acetyltransferase
MEITDATLADLPEILRIEQLGFTAEEAGTAEQYQDRLARLAGTFLVAKEKHKLVGVVVGAATQEPYVADWMFEHTPTNLPTGGHQLIYTIAIDPAYRGHGLGSRLLVALQERAQNAHRETLSLTSLERNVPFYLKNGFENHGVANSTHAGEVWFNLVKPLY
>NZ_CP031169.1|WP_011667631.1|1176700_1178167_+|catalase
MREDLKNSAGQPWGDNEHSLTAGQRGPVLIQDYNLLEKLAHFNRERIPERVVHAKGAGAEGTFRLTKDMHQYTKAKIFTEMGKSVPMRIRFSQVAGEMGSADTVRDVRGFALRFYTDDGNYDIVGNNTPVFFVNDPLKFPDFIHSQKRDPRTHERSQDMQWDFWAHSPESVHQVTILMSDRGIPASYRKMHGYGSHTFKWVNEAGEVFWVKYHFRTAQGIQNLSNDVAQRLAGENPDYLQADLYHAIEAGDFPTWKVCVQVIPEQAGLDYPADIFDVTQVVSQKDYPLIEIGEFTLNKNPDNYFEGVEEAAFSPANLVPGIEPSPDKLLQGRLFAYKDAARYRLGVNYEQLPANRPLNHPNNYERDGFMQTDNHGDQVNYEPNSQGGPQEDPAGRLTPYTVSGKAGNYAYQTDYGRAAGKLYRLLPADERQRLIETIVMNLGQVKSHDVKRLETAQFYEADHDYGLAVAKGLGLKLDEIKDYPFDTTH
>NZ_CP031169.1|WP_139565971.1|1178260_1178806_-|GNAT-family-N-acetyltransferase
MENLHLTDHLALVAPISPLAADLYALIAADRVNLSRWLPWANTMHEVADEAAFLTYAQGQIAAHQLWLAIITVNGKPAGMIDLHDKKDGHADVAYWLGRPYRGHGYISQSLQALEKLAFTDWQLNKLQILTVPDNIASQAVAKSNHYHRDARLPKHIPTLAGDYQDAIIFSKLRQDWLTQI
>NZ_CP031169.1|WP_039104713.1|1179010_1179433_-|hypothetical-protein
MTDQKLFTNTVLIPADATRVHATLTNPQNLLKWVPEITAVDPETNVFVITRTRAAINQHEALTVTSNATTVTYTSREGRLPYQLVFTIVGQASQTLLQETLFVPRNTGLPLTLLSPIAKHALKQNLEMLAILLRRPAMPD
>NZ_CP031169.1|WP_039104711.1|1179511_1180774_-|FAD-dependent-oxidoreductase
MKLLVVGSSHGGRAAITAALAQDATIEIDLIEAGPVTTVYPTQVKVHANTRAIQLLATQHQLLISHAGQKQRLSYDKLILAPGAQATIPAVLSTTSQNVLPMRTRAQINHLKAAATDATIHHVIVIGGGYIGVGAADLFSQHGKQVTLIEHGPQLLGSYLDNDFSMPIQQALQQQGVTVHVNELVTGLTGAPDVTGVTTNQTTLSADLVVVATGTTPNTDWLKDTLDCLPNGLIKTDAYLQTSATDVFAVGDAIAVTYLPQHQSRSIALASNAQRQGELAALNLQTPVLPYTGVVGTSQWQAGHLQFGVTGLTDTAAQRANISHTSVTLTQDQRQSPNPAIPTKHVQFRLTYDPQTKQLLGAQVLADGNIDELINLLALALQAQQTLADLAVADFYMSPGKNDLPHLINAAAMTAYRQEK
>NZ_CP031169.1|WP_035465701.1|1180899_1181502_+|TetR/AcrR-family-transcriptional-regulator
MLMGTRRRGDELETAIYQVTYQLLATNNGTALTFSQVAKAAHTSRTVLYRYWESPFDLVLATLTHYRQQDPQSMQLEHIDQGSLRADLIYVGTSFAQAATAGVSQYFRQLFSLAVDEQDQRQLAKILSLSTTANLTLMQQVVENARRRHELLRTPPQATLLAMFNQIRYVTMIGGAVPGEIEITRLVDDLILPAMQQLGR
>NZ_CP031169.1|WP_035464980.1|1181577_1182402_-|helix-turn-helix-transcriptional-regulator
MPSQLGITLKQVRLQQHLSQATVATGICAQSMLSAIENGKYTPNATLLMRLCQRLKISLDQLSLAENFTISDLEQINDRLAKLCDHHRYTDLREFLLTDAVQARLTTNVQLAAYYYYLGITDFQLGHLTDAQQQFQLALASAPAQHRTTLSRLCWMSLALIHASRQQANASEEAMTQAVTQLKTAPYEANLNSLFYLAAVSHLKLNQLTIAAQWLERGIDFATDHDSHYMLANDYHLLAVIASRSEQIDQQRTAQATEHVLTTLFHESIYDRLD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP031169_1	1.7\|1173294\|33\|NZ_CP031169\|CRISPRCasFinder,CRT	1173294-1173326	33	MN693505	Marine virus AFVG_25M41, complete genome	16522-16554	9	0.727
NZ_CP031169_1	1.7\|1173294\|33\|NZ_CP031169\|CRISPRCasFinder,CRT	1173294-1173326	33	MN693370	Marine virus AFVG_25M236, complete genome	17276-17308	9	0.727
NZ_CP031169_1	1.7\|1173294\|33\|NZ_CP031169\|CRISPRCasFinder,CRT	1173294-1173326	33	MN693072	Marine virus AFVG_25M5, complete genome	21558-21590	9	0.727
NZ_CP031169_1	1.7\|1173294\|33\|NZ_CP031169\|CRISPRCasFinder,CRT	1173294-1173326	33	MN693265	Marine virus AFVG_25M542, complete genome	20682-20714	9	0.727
NZ_CP031169_1	1.7\|1173294\|33\|NZ_CP031169\|CRISPRCasFinder,CRT	1173294-1173326	33	MN693192	Marine virus AFVG_25M42, complete genome	21027-21059	9	0.727
NZ_CP031169_1	1.7\|1173294\|33\|NZ_CP031169\|CRISPRCasFinder,CRT	1173294-1173326	33	MH823906	Citrobacter phage Maroon, complete genome	37650-37682	10	0.697
NZ_CP031169_1	1.7\|1173294\|33\|NZ_CP031169\|CRISPRCasFinder,CRT	1173294-1173326	33	KX431560	Cronobacter phage vB_CsaM_leN, complete genome	37922-37954	10	0.697
NZ_CP031169_1	1.7\|1173294\|33\|NZ_CP031169\|CRISPRCasFinder,CRT	1173294-1173326	33	NC_048646	Cronobacter phage vB_CsaM_leE, complete genome	37922-37954	10	0.697
NZ_CP031169_1	1.7\|1173294\|33\|NZ_CP031169\|CRISPRCasFinder,CRT	1173294-1173326	33	KT381880	Citrobacter phage Margaery, complete genome	38095-38127	10	0.697
NZ_CP031169_1	1.7\|1173294\|33\|NZ_CP031169\|CRISPRCasFinder,CRT	1173294-1173326	33	NC_048645	Cronobacter phage vB_CsaM_leB, complete genome	38458-38490	10	0.697

1. spacer 1.7|1173294|33|NZ_CP031169|CRISPRCasFinder,CRT matches to MN693505 (Marine virus AFVG_25M41, complete genome) position: , mismatch: 9, identity: 0.727

ttaatggataaagtcaaagctgctgaaagcgag	CRISPR spacer
gagatagataaagtaaaagctgctgaaataaaa	Protospacer
  .**.******** *************  .*.

2. spacer 1.7|1173294|33|NZ_CP031169|CRISPRCasFinder,CRT matches to MN693370 (Marine virus AFVG_25M236, complete genome) position: , mismatch: 9, identity: 0.727

ttaatggataaagtcaaagctgctgaaagcgag	CRISPR spacer
gagatagataaagtaaaagctgctgaaataaaa	Protospacer
  .**.******** *************  .*.

3. spacer 1.7|1173294|33|NZ_CP031169|CRISPRCasFinder,CRT matches to MN693072 (Marine virus AFVG_25M5, complete genome) position: , mismatch: 9, identity: 0.727

ttaatggataaagtcaaagctgctgaaagcgag	CRISPR spacer
gagatagataaagtaaaagctgctgaaataaaa	Protospacer
  .**.******** *************  .*.

4. spacer 1.7|1173294|33|NZ_CP031169|CRISPRCasFinder,CRT matches to MN693265 (Marine virus AFVG_25M542, complete genome) position: , mismatch: 9, identity: 0.727

ttaatggataaagtcaaagctgctgaaagcgag	CRISPR spacer
gagatagataaagtaaaagctgctgaaataaaa	Protospacer
  .**.******** *************  .*.

5. spacer 1.7|1173294|33|NZ_CP031169|CRISPRCasFinder,CRT matches to MN693192 (Marine virus AFVG_25M42, complete genome) position: , mismatch: 9, identity: 0.727

ttaatggataaagtcaaagctgctgaaagcgag	CRISPR spacer
gagatagataaagtaaaagctgctgaaataaaa	Protospacer
  .**.******** *************  .*.

6. spacer 1.7|1173294|33|NZ_CP031169|CRISPRCasFinder,CRT matches to MH823906 (Citrobacter phage Maroon, complete genome) position: , mismatch: 10, identity: 0.697

ttaatggataaagtcaaagctgctgaaagcgag	CRISPR spacer
ggagtgcataaagttaaagctgctgaaactcca	Protospacer
  *.** *******.************* .  .

7. spacer 1.7|1173294|33|NZ_CP031169|CRISPRCasFinder,CRT matches to KX431560 (Cronobacter phage vB_CsaM_leN, complete genome) position: , mismatch: 10, identity: 0.697

ttaatggataaagtcaaagctgctgaaagcgag	CRISPR spacer
ggagtgcataaagttaaagctgctgaaactcca	Protospacer
  *.** *******.************* .  .

8. spacer 1.7|1173294|33|NZ_CP031169|CRISPRCasFinder,CRT matches to NC_048646 (Cronobacter phage vB_CsaM_leE, complete genome) position: , mismatch: 10, identity: 0.697

ttaatggataaagtcaaagctgctgaaagcgag	CRISPR spacer
ggagtgcataaagttaaagctgctgaaactcca	Protospacer
  *.** *******.************* .  .

9. spacer 1.7|1173294|33|NZ_CP031169|CRISPRCasFinder,CRT matches to KT381880 (Citrobacter phage Margaery, complete genome) position: , mismatch: 10, identity: 0.697

ttaatggataaagtcaaagctgctgaaagcgag	CRISPR spacer
ggagtgcataaagttaaagctgctgaaactcca	Protospacer
  *.** *******.************* .  .

10. spacer 1.7|1173294|33|NZ_CP031169|CRISPRCasFinder,CRT matches to NC_048645 (Cronobacter phage vB_CsaM_leB, complete genome) position: , mismatch: 10, identity: 0.697

ttaatggataaagtcaaagctgctgaaagcgag	CRISPR spacer
ggagtgcataaagttaaagctgctgaaactcca	Protospacer
  *.** *******.************* .  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1242776 : 1294774

Staphylococcus_phage(28.57%)

protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039104640.1\|1242776_1243448_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_039104638.1\|1243634_1244159_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_011667767.1\|1244291_1244894_+	nitroreductase family protein	NA	NA	NA	NA
WP_139565977.1\|1245050_1246175_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_011667765.1\|1246150_1246555_-	ribonuclease HI family protein	NA	NA	NA	NA
WP_021742313.1\|1246594_1247014_+	hypothetical protein	NA	NA	NA	NA
WP_039104636.1\|1247010_1248666_+	formate--tetrahydrofolate ligase	NA	NA	NA	NA
WP_035464969.1\|1248825_1249290_+	signal peptidase II	NA	NA	NA	NA
WP_039104634.1\|1249289_1250213_+	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_139565978.1\|1250355_1250889_+	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA
WP_021742568.1\|1250913_1251990_+	carbamoyl phosphate synthase small subunit	NA	NA	NA	NA
WP_039104633.1\|1251992_1254569_+	carbamoyl phosphate synthase	NA	NA	NA	NA
WP_069360123.1\|1254648_1256355_-	fibronectin/fibrinogen-binding protein	Q84500	Paramecium_bursaria_Chlorella_virus	2.8e-08	39.2
WP_011667756.1\|1256555_1256984_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_039104630.1\|1257000_1258308_+	alkaline phosphatase family protein	NA	NA	NA	NA
WP_139565979.1\|1258294_1259542_+	MFS transporter	NA	NA	NA	NA
WP_139565980.1\|1259602_1260469_+	DegV family EDD domain-containing protein	A0A0N9SI50	Staphylococcus_phage	1.1e-16	43.1
WP_080662455.1\|1260641_1261184_+	folate family ECF transporter S component	NA	NA	NA	NA
WP_024525246.1\|1261455_1261893_+	GtrA family protein	NA	NA	NA	NA
WP_024525245.1\|1262232_1262742_-	VanZ family protein	NA	NA	NA	NA
WP_039104625.1\|1262972_1263479_-	VanZ family protein	NA	NA	NA	NA
WP_024525243.1\|1263686_1264337_+	endonuclease III	NA	NA	NA	NA
WP_039104623.1\|1264355_1265159_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_039104621.1\|1265251_1266196_+	zinc-binding dehydrogenase	NA	NA	NA	NA
WP_051345713.1\|1266237_1267170_-	NADP-dependent oxidoreductase	NA	NA	NA	NA
WP_024525239.1\|1267326_1267845_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_024525238.1\|1267992_1268730_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_024525237.1\|1268791_1269526_-	sulfite exporter TauE/SafE family protein	Q6EVM7	Oenoccocus_phage	1.3e-60	49.6
WP_080662454.1\|1269528_1270080_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_024525235.1\|1270151_1270721_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_039104618.1\|1270809_1271520_+	class I SAM-dependent methyltransferase	A0A097BYE1	Leuconostoc_phage	3.7e-39	37.3
WP_039104616.1\|1271645_1272458_+	oxidoreductase	NA	NA	NA	NA
WP_039104614.1\|1272474_1273452_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_003555349.1\|1273738_1274476_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	7.4e-59	50.4
WP_085769005.1\|1274485_1275709_-\|transposase	IS21 family transposase	A0A059NT83	Lactococcus_phage	2.1e-106	51.5
WP_039104611.1\|1276079_1276817_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_080769668.1\|1276853_1277816_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_024525230.1\|1277879_1278785_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_021742542.1\|1278997_1279741_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_039104610.1\|1279758_1280397_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_021742540.1\|1280411_1280903_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_024525228.1\|1280957_1281323_+	hypothetical protein	NA	NA	NA	NA
WP_021742538.1\|1281657_1282932_-	hypothetical protein	NA	NA	NA	NA
WP_039104878.1\|1283089_1283641_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_139565981.1\|1283775_1284771_+	hypothetical protein	NA	NA	NA	NA
WP_139565905.1\|1284757_1285542_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_139566188.1\|1285922_1287206_+	MFS transporter	NA	NA	NA	NA
WP_139565982.1\|1287382_1288417_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_021742536.1\|1288589_1289654_-	tyrosine recombinase XerS	NA	NA	NA	NA
WP_139565983.1\|1289992_1290777_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_060463087.1\|1291434_1292460_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	5.7e-41	35.5
WP_021742535.1\|1292584_1293025_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_024525226.1\|1293040_1293574_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_011667583.1\|1293601_1294045_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_024525225.1\|1294198_1294774_-\|protease	matrixin family metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_2

1303324 : 1367680

Staphylococcus_phage(22.73%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024855008.1\|1303324_1304737_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A1B2IDZ7	Erwinia_phage	3.0e-32	27.5
WP_011667574.1\|1304754_1305297_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA
WP_099963038.1\|1305300_1306269_-	tyrosine recombinase XerC	A0A0K0MWE8	Gordonia_phage	5.4e-17	29.6
WP_015473756.1\|1306400_1308512_-	type I DNA topoisomerase	A0A1V0SCS0	Indivirus	1.1e-96	35.1
WP_039104600.1\|1308646_1309537_-	DNA-protecting protein DprA	NA	NA	NA	NA
WP_139566189.1\|1309576_1310350_-	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	1.4e-23	39.6
WP_039104598.1\|1310342_1311203_-	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_139565984.1\|1311724_1313788_-	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_060463087.1\|1314058_1315084_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	5.7e-41	35.5
WP_139565985.1\|1315112_1315952_-	hypothetical protein	NA	NA	NA	NA
WP_039104594.1\|1315944_1316793_-	hypothetical protein	NA	NA	NA	NA
WP_139565986.1\|1316914_1318252_-	AAA family ATPase	NA	NA	NA	NA
WP_003555349.1\|1318358_1319096_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	7.4e-59	50.4
WP_085769005.1\|1319105_1320329_-\|transposase	IS21 family transposase	A0A059NT83	Lactococcus_phage	2.1e-106	51.5
WP_139565987.1\|1320408_1320921_-	AAA family ATPase	NA	NA	NA	NA
WP_080769666.1\|1322228_1322651_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_139565905.1\|1323461_1324246_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_080769665.1\|1324927_1325848_-	hypothetical protein	NA	NA	NA	NA
WP_021741852.1\|1325899_1327408_-	carbohydrate kinase	NA	NA	NA	NA
WP_021741851.1\|1327433_1328450_-	DUF4432 family protein	NA	NA	NA	NA
WP_060463087.1\|1329262_1330288_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	5.7e-41	35.5
WP_011667564.1\|1331341_1331563_-	YozE family protein	NA	NA	NA	NA
WP_011667563.1\|1331573_1332173_-	YpmS family protein	NA	NA	NA	NA
WP_039104585.1\|1332185_1333106_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_021741848.1\|1333171_1334023_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	5.8e-15	33.6
WP_108910188.1\|1334585_1335515_-\|transposase	IS30 family transposase	H7BW61	unidentified_phage	7.2e-19	29.1
WP_139565988.1\|1336059_1336551_-	dihydrofolate reductase	A0A0N9S8H6	Staphylococcus_phage	4.8e-22	36.5
WP_139565989.1\|1336567_1337518_-	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	4.5e-117	62.1
WP_039104579.1\|1337529_1339422_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L0W2	Tupanvirus	1.2e-49	29.5
WP_039104577.1\|1339450_1340644_-\|tRNA	CCA tRNA nucleotidyltransferase	G3MAR3	Bacillus_virus	2.1e-34	39.3
WP_011667555.1\|1340777_1341716_+	YitT family protein	M1Q1P6	Streptococcus_phage	2.2e-52	38.8
WP_039104574.1\|1341833_1343093_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_011667553.1\|1343198_1343474_-	HU family DNA-binding protein	A0A0H3UZA0	Geobacillus_virus	3.1e-26	68.5
WP_011667552.1\|1343709_1345017_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_139565990.1\|1345106_1346408_-	30S ribosomal protein S1	NA	NA	NA	NA
WP_011667550.1\|1346487_1347168_-	(d)CMP kinase	NA	NA	NA	NA
WP_024525207.1\|1347195_1347810_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_039104569.1\|1347881_1349303_-	ATP-dependent DNA helicase RecQ	F2NZ48	Diadromus_pulchellus_ascovirus	1.8e-53	38.0
WP_039104568.1\|1349307_1350342_-	hypothetical protein	NA	NA	NA	NA
WP_024525204.1\|1350431_1351013_-	ECF transporter S component	NA	NA	NA	NA
WP_011667545.1\|1351305_1352028_-	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_011667544.1\|1352027_1352630_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.6e-11	39.8
WP_069360206.1\|1352607_1353381_-	segregation/condensation protein A	NA	NA	NA	NA
WP_123830936.1\|1353349_1353763_-	N-acetyltransferase	NA	NA	NA	NA
WP_039104547.1\|1353783_1354680_-	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	9.7e-37	31.4
WP_021741022.1\|1354691_1355573_-	hypothetical protein	NA	NA	NA	NA
WP_011667539.1\|1355736_1357494_-	pyruvate kinase	NA	NA	NA	NA
WP_024855000.1\|1357746_1358475_-	transaldolase	H8ZMU3	Synechococcus_phage	7.1e-14	33.0
WP_039104544.1\|1358567_1361933_-	DNA polymerase III subunit alpha	A0A291AVG1	Streptomyces_phage	1.3e-145	32.2
WP_039104542.1\|1362123_1364733_-	ATP-dependent chaperone ClpB	A0A2I7SAX5	Vibrio_phage	4.2e-125	34.6
WP_011667535.1\|1364877_1366119_-	peptidase T	NA	NA	NA	NA
WP_035464121.1\|1366179_1366986_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_021741029.1\|1366972_1367680_-\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_3

1483027 : 1490966

Lactobacillus_phage(42.86%)

terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_139566024.1\|1483027_1484074_-	replication protein	O03966	Lactobacillus_phage	8.0e-75	46.4
WP_139566025.1\|1484090_1484780_-	DUF4355 domain-containing protein	NA	NA	NA	NA
WP_139566026.1\|1484837_1485785_-	hypothetical protein	A0A0S2MYG5	Enterococcus_phage	5.5e-06	20.1
WP_139566027.1\|1485708_1487433_-\|portal	phage portal protein	A7J292	Streptococcus_phage	2.0e-59	33.0
WP_139566028.1\|1487416_1487686_-	hypothetical protein	NA	NA	NA	NA
WP_139566029.1\|1487685_1487979_-	hypothetical protein	NA	NA	NA	NA
WP_139566030.1\|1487975_1489265_-\|terminase	PBSX family phage terminase large subunit	A0A2H4IYR5	uncultured_Caudovirales_phage	2.8e-154	59.0
WP_139566031.1\|1489242_1489737_-\|terminase	terminase small subunit	A0A0P0IUY4	Lactobacillus_phage	1.6e-17	44.5
WP_139566032.1\|1489749_1490133_-	hypothetical protein	NA	NA	NA	NA
WP_139566033.1\|1490125_1490407_-	hypothetical protein	NA	NA	NA	NA
WP_139566034.1\|1490403_1490667_-	DUF2829 domain-containing protein	A0A2P1CCQ6	Klebsiella_phage	1.5e-14	49.4
WP_139566035.1\|1490669_1490966_-	hypothetical protein	K4I1W7	Lactobacillus_phage	1.3e-25	66.3

DBSCAN-SWA_4

1494483 : 1501726

Lactobacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_097545830.1\|1494483_1494951_-	transcriptional regulator	D6PSV8	Lactobacillus_phage	4.2e-84	99.4
WP_139566037.1\|1495585_1495792_-	hypothetical protein	D6PSV7	Lactobacillus_phage	3.5e-27	87.7
WP_139566038.1\|1495772_1496183_-	DUF1642 domain-containing protein	A0A291I9M4	Lactobacillus_phage	3.6e-31	49.7
WP_080662447.1\|1496175_1496589_-	hypothetical protein	D6PSV5	Lactobacillus_phage	2.3e-33	55.5
WP_139566192.1\|1496585_1496981_-	hypothetical protein	Q9XJF2	Lactococcus_phage	5.2e-27	50.7
WP_139566039.1\|1497543_1497807_-	hypothetical protein	NA	NA	NA	NA
WP_139566040.1\|1497794_1498214_-	RusA family crossover junction endodeoxyribonuclease	D6PSU4	Lactobacillus_phage	5.0e-44	61.2
WP_139566041.1\|1498912_1499854_-	DUF4373 domain-containing protein	A0A0H4TKJ7	Bacillus_phage	3.8e-15	35.2
WP_139566042.1\|1499882_1500836_-	recombinase RecT	D2IYT9	Enterococcus_phage	4.9e-79	56.9
WP_085763012.1\|1500838_1501726_-	hypothetical protein	A0A0P0IJW5	Lactobacillus_phage	1.7e-94	56.6

DBSCAN-SWA_5

2190189 : 2237070

Staphylococcus_phage(30.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024526340.1\|2190189_2191581_-\|tRNA	asparagine--tRNA ligase	M1PB22	Moumouvirus	1.7e-80	36.3
WP_021741917.1\|2191958_2193500_-	MFS transporter	A0A0M3UL24	Mycobacterium_phage	1.8e-27	27.9
WP_021741916.1\|2193496_2194063_-	PadR family transcriptional regulator	NA	NA	NA	NA
WP_021741915.1\|2194285_2194687_+	hypothetical protein	A0A0E3XCL7	Enterococcus_phage	7.2e-16	58.6
WP_080662538.1\|2194784_2195501_-	hypothetical protein	NA	NA	NA	NA
WP_024526337.1\|2195588_2196269_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_039106124.1\|2196345_2197290_-	carbamate kinase	NA	NA	NA	NA
WP_011668701.1\|2197317_2198427_-	aminotransferase	NA	NA	NA	NA
WP_039106127.1\|2198437_2199850_-	arginine-ornithine antiporter	NA	NA	NA	NA
WP_011668703.1\|2199926_2200958_-	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_011668704.1\|2201016_2202249_-	arginine deiminase	NA	NA	NA	NA
WP_139566119.1\|2202552_2203336_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_021741053.1\|2203431_2204994_-	YfcC family protein	NA	NA	NA	NA
WP_021741054.1\|2205094_2206393_+	sensor histidine kinase	NA	NA	NA	NA
WP_021741055.1\|2206389_2207220_+	response regulator	NA	NA	NA	NA
WP_011668708.1\|2207320_2208835_+	YfcC family protein	NA	NA	NA	NA
WP_065201698.1\|2208861_2210196_+	Sapep family Mn(2+)-dependent dipeptidase	NA	NA	NA	NA
WP_035464148.1\|2210263_2210479_-	hypothetical protein	NA	NA	NA	NA
WP_021741060.1\|2210641_2211808_+	DUF998 domain-containing protein	NA	NA	NA	NA
WP_021741061.1\|2211856_2212459_-	glutamine amidotransferase	NA	NA	NA	NA
WP_021741062.1\|2212651_2214664_+	sodium:proton antiporter	NA	NA	NA	NA
WP_021741063.1\|2214809_2215793_+	tyrosine-protein phosphatase	NA	NA	NA	NA
WP_139566120.1\|2215920_2218467_-	hypothetical protein	NA	NA	NA	NA
WP_139566121.1\|2218743_2220114_+	DHA2 family efflux MFS transporter permease subunit	A0A0M3UL24	Mycobacterium_phage	1.8e-10	22.9
WP_139566122.1\|2220240_2220939_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_060463087.1\|2220991_2222017_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	5.7e-41	35.5
WP_021741067.1\|2222313_2222742_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_021741068.1\|2222905_2223244_-	hypothetical protein	NA	NA	NA	NA
WP_039106137.1\|2223323_2223584_-	DUF3781 domain-containing protein	NA	NA	NA	NA
WP_021741070.1\|2223573_2223825_-	hypothetical protein	NA	NA	NA	NA
WP_035464160.1\|2223843_2224317_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_139566123.1\|2224758_2225484_-	nicotinamide mononucleotide transporter	A0A1S6UAV8	Serratia_phage	3.3e-11	25.4
WP_139566124.1\|2225536_2226430_-	glycosyl hydrolase family 53	NA	NA	NA	NA
WP_139566125.1\|2226581_2226836_-	hypothetical protein	NA	NA	NA	NA
WP_139566126.1\|2227060_2228005_+	WYL domain-containing protein	NA	NA	NA	NA
WP_139566127.1\|2228111_2229041_-\|transposase	IS30 family transposase	H7BW61	unidentified_phage	3.6e-18	29.5
WP_139566128.1\|2229067_2229184_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_060463087.1\|2229493_2230519_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	5.7e-41	35.5
WP_139566129.1\|2231243_2232902_-	hypothetical protein	NA	NA	NA	NA
WP_060463087.1\|2233277_2234303_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	5.7e-41	35.5
WP_139566130.1\|2234641_2234950_-	hypothetical protein	NA	NA	NA	NA
WP_139566131.1\|2235151_2235475_-	hypothetical protein	NA	NA	NA	NA
WP_085769005.1\|2235846_2237070_+\|transposase	IS21 family transposase	A0A059NT83	Lactococcus_phage	2.1e-106	51.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage