CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP031185	Lactobacillus brevis strain SA-C12 chromosome, complete genome	2 crisprs	cas3,csa3,DEDDh,DinG	3	8
NZ_CP031186	Lactobacillus brevis strain SA-C12 plasmid pSAC12_A, complete sequence	0 crisprs	NA	0	0
NZ_CP031187	Lactobacillus brevis strain SA-C12 plasmid pSAC12_B, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP031185_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031185_1

110685-110831

Orphan

I-E,II-B

Consensus_repeat	Method
GTATTCCCCACATGTGTGGGGGTGA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP031185_1

>merge|NZ_CP031185|1|110685-110831|CRISPRCasFinder
GTATTCCCCACATGTGTGGGGGTGATCCCCTTATCAACTGAACCAACTGATACACTAGTGCGTATTCCCCACATGTGTGGGGGTGATCCTATTTCGAAGTGAGAAGTTTGAGCTTTCCAATGGTATTCCCCACATGTGTGGGGGTGA

>NZ_CP031185|1|1|110685-110831|CRISPRCasFinder
GTATTCCCCACATGTGTGGGGGTGA	TCCCCTTATCAACTGAACCAACTGATACACTAGTGC
GTATTCCCCACATGTGTGGGGGTGA	TCCTATTTCGAAGTGAGAAGTTTGAGCTTTCCAATG
GTATTCCCCACATGTGTGGGGGTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031185.1\|WP_087609647.1\|115493_116660_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340887
NZ_CP031185.1\|WP_035464637.1\|104690_105119_-\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NZ_CP031185.1\|WP_139559988.1\|119780_121301_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP031185.1\|WP_011666912.1\|118976_119450_-\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	unknown	unknown	gnl\|CDD\|179443
NZ_CP031185.1\|WP_024525970.1\|100860_101124_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031185.1\|WP_039106903.1\|109538_110360_+\|AAC(3)-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|376807
NZ_CP031185.1\|WP_011666911.1\|118233_118980_-\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380322
NZ_CP031185.1\|WP_139559987.1\|105724_107413_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031185.1\|WP_039106905.1\|111168_111744_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP031185.1\|WP_024525964.1\|107590_109078_-\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|235579
NZ_CP031185.1\|WP_087609648.1\|114424_115240_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235640
NZ_CP031185.1\|WP_039106984.1\|101288_101555_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031185.1\|WP_015473049.1\|121399_122833_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP031185.1\|WP_024525968.1\|103103_104546_-\|NADP-dependent-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236453
NZ_CP031185.1\|WP_039106986.1\|102748_102937_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031185.1\|WP_087609652.1\|105203_105641_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225064
NZ_CP031185.1\|WP_087609649.1\|113342_114185_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381314
NZ_CP031185.1\|WP_011666900.1\|102079_102286_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031185.1\|WP_087609650.1\|111813_113241_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143451
NZ_CP031185.1\|WP_011666910.1\|116817_118164_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340903

Protein	Function_ID	Function_description	E-value
NZ_CP031185.1\|WP_035464637.1\|104690_105119_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	5.23633e-15
NZ_CP031185.1\|WP_011666912.1\|118976_119450_-\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	gnl\|CDD\|179443	PRK02551, PRK02551, flavoprotein NrdI; Provisional.	1.60265e-94
NZ_CP031185.1\|WP_039106903.1\|109538_110360_+\|AAC(3)-family-N-acetyltransferase	gnl\|CDD\|376807	pfam02522, Antibiotic_NAT, Aminoglycoside 3-N-acetyltransferase. This family consists of bacterial aminoglycoside 3-N-acetyltransferases EC:2.3.1.81, these catalyze the reaction: Acetyl-Co + a 2-deoxystreptamine antibiotic <=> CoA + N3'-acetyl-2-deoxystreptamine antibiotic. The enzyme can use a range of antibiotics with 2-deoxystreptamine rings as acceptor for its acetyltransferase activity, this inactivates and confers resistance to gentamicin, kanamycin, tobramycin, neomycin and apramycin amongst others.	1.21712e-82
NZ_CP031185.1\|WP_011666911.1\|118233_118980_-\|NADPH-dependent-oxidoreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	4.75846e-78
NZ_CP031185.1\|WP_015473049.1\|121399_122833_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	7.93766e-67
NZ_CP031185.1\|WP_039106905.1\|111168_111744_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.98196e-10
NZ_CP031185.1\|WP_024525964.1\|107590_109078_-\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|235579	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated.	0
NZ_CP031185.1\|WP_087609648.1\|114424_115240_+\|hypothetical-protein	gnl\|CDD\|235640	PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.	0.00226186
NZ_CP031185.1\|WP_087609647.1\|115493_116660_+\|MFS-transporter	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.31472e-64
NZ_CP031185.1\|WP_024525968.1\|103103_104546_-\|NADP-dependent-phosphogluconate-dehydrogenase	gnl\|CDD\|236453	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase.	0
NZ_CP031185.1\|WP_087609652.1\|105203_105641_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225064	COG2153, ElaA, Predicted acyltransferase [General function prediction only].	2.43695e-34
NZ_CP031185.1\|WP_087609649.1\|113342_114185_-\|aldo/keto-reductase	gnl\|CDD\|381314	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR). Xylella fastidiosa phenylacetaldehyde dehydrogenase is a founding member of aldo-keto reductase family 13 member B1 (AKR13B1). phenylacetaldehyde dehydrogenase (EC 1.2.1.39) catalyzes the NAD+-dependent oxidation of phenylactealdehyde to phenylacetic acid.	3.72671e-134
NZ_CP031185.1\|WP_139559988.1\|119780_121301_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	1.22132e-90
NZ_CP031185.1\|WP_087609650.1\|111813_113241_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143451	cd07133, ALDH_CALDH_CalB, Coniferyl aldehyde dehydrogenase-like. Coniferyl aldehyde dehydrogenase (CALDH, EC=1.2.1.68) of Pseudomonas sp. strain HR199 (CalB) which catalyzes the NAD+-dependent oxidation of coniferyl aldehyde to ferulic acid, and similar sequences, are present in this CD.	0
NZ_CP031185.1\|WP_011666910.1\|116817_118164_+\|MFS-transporter	gnl\|CDD\|340903	cd17345, MFS_GlpT, Glycerol-3-Phosphate Transporter of the Major Facilitator Superfamily of transporters. Glycerol-3-Phosphate Transporter (also called GlpT or G-3-P permease) is responsible for glycerol-3-phosphate uptake. It is part of the Organophosphate:Pi antiporter (OPA) family of integral membrane proteins responsible for the transport of specific organophosphates or sugar phosphates across biological membranes with the simultaneous translocation of inorganic phosphate into the opposite direction. The GlpT group belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.51207e-142

>NZ_CP031185.1|WP_039106903.1|109538_110360_+|AAC(3)-family-N-acetyltransferase
MTNWQEREITRVTTATDLYDLFDRLGLRATDSCLVHTSLSAFGYIPGGEQTLVTALKTTLSQGNIVMPAQSADYTDPREWLYPPVRQDLQAKVMAGMPAYDRTLTPCHFIGLTPEYFRTLPDTQRSGHPTCSMTAWGRNAAQICATPTLDLPFGAQGPLQKLYDLNAKVVCLGTDFETATAIHLAESTIGRPVFEEQAPISVAGKPQWRSYQMVELEPYDDFNVMGAAFCQAHPEQVTQQPLGQHHQARAIGMRALVDFAREYYRKKDRREMS
>NZ_CP031185.1|WP_024525964.1|107590_109078_-|glucose-6-phosphate-dehydrogenase
MATERTALFMFFGGTGDLAYRKLYPSLFNLYRKGNLRTHFAVIGTSRQSIDDDKFRAAVKKSLADSGNRADSKEASDFISHFYYQSHDVTDTAHYSVLKELAEKLDKKYKLQGNRIFYLSMAPQFFGTIAQDLKTQGLMSTDKDAFNRLVIEKPFGRDFDSAKQLNDALSKSFEEEQIFRIDHYLGKEMIQNIEALRFGNTLVESLWNNRYIDNIQVTLSEKLGVEERASYYDNSGALRDMVQNHIMQIVSLLAMEQPVAFTDTDIRAEKVKALRSLRVYNVADAATNFVRGQYGSVNDQPDYRHEDNVPVDSTTETFVAGKLLFDNYRWSGTPFYVRTGKMLADKFTRVDVVFKRPLVDIFAFPQSQNTPLAANVLTIFVEPHAGFSLQLNAKTNDTGFQTEPIKLDYIVGAEKSKDTPEPYERLIHDVLKGDGTNFSSWPEVSYAWKFVDQIRRVWDLQEPNFPNYTPHSMGPAAAEELIQRDHREWIYRLNN
>NZ_CP031185.1|WP_139559987.1|105724_107413_-|hypothetical-protein
MTFSPLNVPILLLSTSLLTLTLANVQPVTAHATATSVSLAEKTTTSTATAQLFTSTVNQPLTLTADTYPLYNDEGQKTTDTLPGKQQLTTTKILVDPLAGTTYYRVQENPDRFIKYDATTVNLKRTLTLNFSDPDGNTIKGPLMFRMTQGNDFDAIASDLKDQYAAVIDGYVFNKTTVDNTTDPYNTQFNFSYDKAGGSSTDESHTSIPASPLPSLSTLTNEKIRLTSPSDYSLYDNDGNNLTTGKTTVAGSSYYSATGLYLFHQDSTNADNVFYQISPDAFIKGDDTTALTSPITFRYETSDGQSIKTDSMLDTGLVTGDDLNNLIKELQTWQPTIDGYTYQGVSPTADTLTFKYTPTSASSSSDTSSPSSDSSQSSSSTSTDSTASSDTHNSVVTSASSTHPDKSIVPKGAAVTAIRKIGVYRDVQFTKQNRRHWYQRQPQTKRPQFVVTGYARTKAGTLRYQIRDVNHHSATDGQRGYITANSKFVMPTYYQAAPKRIKVISPHGVNAYRQINLTQKKRHYRVGTTITVKAIKSYHLTTRLVLSNGTYVTANKILVAKK
>NZ_CP031185.1|WP_087609652.1|105203_105641_+|GNAT-family-N-acetyltransferase
MEWQAKSFDELSREEFFDIAYERIRTFVIAQHRPYQEIDATDKVARHILGYQAGQLVAYARVFRKAGHVTFGRVLTIPEQRGTGLGRQLMVQIEAEIRRNFAGEAISIEAQIDKQHFYEKFGYAAIGAVFDFNGTPHIRMDKAGL
>NZ_CP031185.1|WP_035464637.1|104690_105119_-|winged-helix-turn-helix-transcriptional-regulator
MPNAFRSIGLIARATAAMGNKLFQADDLNNNQFIFLMRIVETPGITQAELATQLHVDPSTCLRAVRKLIATQYVTRGTDAHDKKRRPLLATAKGQAMYPALEDYEQQILSVGTQGLSTGETALLEELLAKVARNVRDYQNQH
>NZ_CP031185.1|WP_024525968.1|103103_104546_-|NADP-dependent-phosphogluconate-dehydrogenase
MADQKANIGVVGMAVMGKNLALNIESRGYTVGIYNRSANKTEQVMKDHSEKKLVPSYTVEDFVKSLETPRRILLMVKAGKPTDAVIHELLPLLDKGDVLIDGGNTNFHDTMARNAELDKSGINFIGMGVSGGELGALQGPSLMPGGQKEAYDLVAPILEKIAAKAPQDGKPCVTYIGPNGAGHYVKMVHNGIEYGDEELIDESYNIMRNVAGISVDDMADIFKEWNKGELDSYLIEITADILTRKDDLGDDKNLPIVDAIKDRGNNKGTGKWSSEDALDVQVPQSVITESVYARYISMLKDERVKASKVLPAAEKQGKADIADKDKFVEEVRQALFFGKLMSYAQGFEQLRFASEANDWDLKFGELAQIWRGGCIIRAQFLQNITDAFDKDPKLSNLLFDDYFKDIAGKYQQSIRDVVAMAVQAGIPVPSLSAAITYYDSFRAEVLPANLLQAQRDYFGAHTYERNDREGNFHYSWYEEQ
>NZ_CP031185.1|WP_039106986.1|102748_102937_-|hypothetical-protein
MKQLLLRSTLTILFYEIWVIWLWRLDHVFMIDDRPTIWEAIGLLLSGIGLLLWIVWSLAHWK
>NZ_CP031185.1|WP_011666900.1|102079_102286_-|hypothetical-protein
MKKLFASYSKWFRGLAYLAGPIITIEIVSFLMFLADLLQLGCAVFYVIFFATFLIESLSHGIHDLKAK
>NZ_CP031185.1|WP_039106984.1|101288_101555_-|hypothetical-protein
MQKFEAQLSSLPPAEQRWQSGWLSSLISNLLITGAFVATYWWPVSPSVATTLSSLALLSWLIWFILWFGHLTHRLKISEDKFNKQKND
>NZ_CP031185.1|WP_024525970.1|100860_101124_+|hypothetical-protein
MTENVVLAPPEALELAKHLDEWAKWRQTHDRTTADMDWDQFIAKSREKAQWQAGLATEIDHWESLHAIQLALTDNLMGTAHGGHTRQ
>NZ_CP031185.1|WP_039106905.1|111168_111744_+|TetR/AcrR-family-transcriptional-regulator
MREKDTAKQTSIIDEVSNIILNEGIAAVSMSKIAKASGISSSTIYVYFTDKEDVLKQVYLAKKEMLATFLLKNIEATTDNPVIFAQQFMRALYEFGMQYYEALMIIEQFNSSPVRNNLQISQAESYRGFERLFEATSHAPQFVTDSAAVILGFAYAPIVLYVKARKTNQLAAQTISIEQVIDMCMHALLKE
>NZ_CP031185.1|WP_087609650.1|111813_113241_+|aldehyde-dehydrogenase-family-protein
MTTNVEMTKIFEDQRQQYNRAQPMSLATRLATLDQLERLLRENLNAFVEALQADFGQRDPLQIIGADLTGPLTTIAYTRKHLRKWMKPDKKRLGLMGLSGSREYVYNEPLGVVGIMSPFNAPIDLALDPAIEAIAAGNRVMVKISEYTPKAAALLQRLAKKYVSETTFAVITGAADVSAHFSALNWDKFVFTGGSETGKKILAAAAPNLTPVVLELGGKNPAVVLPDANQQLAAGKIARGRSGNSGQICLDVDYAMVPANQLTDYIHLIVEQLEQAFPTYSDNPEYSAIINDAAYKRITGMLAEAQQRGTQLLTINPNHDAVPDATKRLIPLTLAINPDPDLQIAKNETFGPILSIFTYETLDEAIAFINTHEKSLAMYVFGKNEAQLNRVIRHTSSGGVDINELALHAGSHEMGFGGVGYSGMGRYKGGKVGFETFSNPKSVYKQGILAKYTTRFMVPIHNQRNEKRFMKMLGL
>NZ_CP031185.1|WP_087609649.1|113342_114185_-|aldo/keto-reductase
MEKTFTFASDLTVNRLGYGTMQLTGDGVWGPVADPDNAVKVIETAIDHGVNFIDTADAYGPFYANLYLRDALKNRPDNHVMVATKVGNTRQGPDVWTPVGVPAYLRQQVEMNLFTLGLDHIDLLQLHRVDPNVPLADQIGVLKDMQDEGKIKHIGLSQVSVDQLKEATAIAPIVSVQNMYNLSNRQDEDVLDYADAHHIAFIPWFPLATGELIKDATLTNIAQKYNASPAQIALAWLLKRSDVILPIPGTKSSDHELQNIQAQDIDLSQADFDALKALAK
>NZ_CP031185.1|WP_087609648.1|114424_115240_+|hypothetical-protein
MKKFMVALTGLVTLATVGATVPATAVTTAHAATKSTHVSPSLKVNAIYTTSTKVAGTATKGSKITVKATKNAKTNLASGTASKTTGKYSIKLSKKLKKNANVYVYATNSKTKAYFYRIIRVQAASTKAATTKSTSTKKTTTKKTTTKKSTTSSKTSAASFSVKTPTGTWTSNTANKYSQKWVFSQKTGLNEYLYKNGKKVKTLVSYAKYSVSAKTPTFWKITYTPKGSKTKQTMYLRFTSAKKFKVVNSKNQVISTKAGVAPAAKWTFTKA
>NZ_CP031185.1|WP_087609647.1|115493_116660_+|MFS-transporter
MWKTKKEVSLVGILSATLLLNAAAACMWPLTTVYMHNQLHQTLALAGVALLGMSLCMIVGNWLGGWLFDNWSPFKSALVGTLCSFIPMLTLIVFHGWPIFGIMLLFIGLGDGIVMTVVNSFAANIKEISSRRVFNWLYIGMNLGVVVGTLMVGVLMDHGVQLVFMVASLSYAALLVIFVVDFRMDIQTKTHQHVKGPAKPAQLQLIWLIAAMVFCLYLSYSLWESVISVHMTNLGISFEKYSLLWTLNGLLIVFGQPLANRIGTYFKMSSQIAVGTLIFILSFLLLVFAKDYTMFVVTMVILTVGEMTGFPGIPAWIDGLAGDNDKGKFQGIYNMAISFGRAVGPLYGGLIIEYGSYQLLFWSVTGLMLAALAAVMLRNHHNLTRVKK
>NZ_CP031185.1|WP_011666910.1|116817_118164_+|MFS-transporter
MFSFLKPAPDAKVKVPTEKVVGTYRLRQTGVLLSICIGYIGYYIIRLIFTTEQNDIMKAYGFTTADIGLVMSCFGIGYGISKLFMGALSDKSNPKWYLATGLFISAILNFGLGSTRNLYVMMLLMLVMSVAQGMGAAACQRTVQLWWGKKWRGTVYAVWSSAHNAGAFACVAVVQIATLMFTHSIAAVFYTASVVSIVIAIFIVLAGADRPATVGLPSIGEYTGDEVVLDDGQATRAELTDLSLWQIFVRYILTNKVVWAITLTSMSLYLVRYGIMSWIPSYLTQFKGFDPGTAKWLVGIFELAAVPGVILMGAISDLLKDRRAIVCIGCVIGLLICLTTYFFSTSHLAIIIVLLIMGSLIYAPLTLVGLMVNESVPKFAVGSSTGFMGFFQYIFGETLATALIGILVAKFGWIASNTVLYTAAGLALLLLCYIAIHEHHVAKIAAGD
>NZ_CP031185.1|WP_011666911.1|118233_118980_-|NADPH-dependent-oxidoreductase
MNPTLTTLFNHRSIRQFTAEKLTTDEVTTLIAAAQHAATSTFSQQYSVISVTDPAKLAVLGDITGHHWLEQAGHYFVMVADQYRNLQLVPPTATTTTNLHSLDKLLAGVFDAAIATEAIVTAGESLNLGSTIMGSILNDAPRVIDLLDLPELTFPVLGLAIGHPTEHPEQKPRLPQDLMHFTNGYQALTADDARLVAYDQVIHDYYQQRGTHQRDETFSHHIISEMSRDPQQRAGILQALQQQGFLTE
>NZ_CP031185.1|WP_011666912.1|118976_119450_-|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI
MQPIRILFISIEGNTRNFVENLTAYAAKQHASQPELPEITATEISETSDLTDETQPFFCFVPTYLDGGNGIDNGVKELMTKVLGEYIAYHHNAQQLLGVVGSGNRNFNEQYCLTAKRYATTFGVPFIADYELRGVPRDETRIYDALINRLKEVTPAS
>NZ_CP031185.1|WP_139559988.1|119780_121301_+|ATP-binding-cassette-domain-containing-protein
MTQVKLTNLIKDLADGRLFSADRLTAQTGDCVGIIGANGGGKTTLARIIAGQDDEFSGQRHVTADVVLVPQLAPMDGQSGGQSMLARVRRALAQRPAILILDEPSANLDDNHQQWLIEQLRHYSGLFLLISHDRELLTAVTTAIWSLDDHVYTQFNGNFAAFNTVREQQRQTAQSAYRQEQVERRKLRQAAQARHEKAAQIRRGSNRMSAGERADSKSVREQNAAKMERGARVFQDRADRQTMTVKPHEAAAMKLLASDLPPVVGKQLITVRNLHLKRGKHELLSDVNFRVTPGERIALAGPNGSGKSTLITAILTGQVGTRLAPSARVGYFQQDMVAALPLTQTVWQVISAATVFDSNRTRQVMGAFGLNARFYNRPIAELSGGERVKVQLLTILVSASNLLILDEPTNYLDLPAVQALEDYLVGYPGTVLFVAHDQVFRDHVATRTLVLTNRQLRDPARTAQGVPASDLPRLQFEYDQAMLAPELDTQRLQELRQKIAAFKATL
>NZ_CP031185.1|WP_015473049.1|121399_122833_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MDSVQSSQPELAKKARVQVAHPMLAMMGMLIGGFVGMFSETSLNIALPQLMAQLNVSTATVQWLVTGYMLMVGVVLPLSSLITKWFTTRQVILFALIDFAVGAIISASAPGFGVLLFGRMIQGIATGLILPLMFTVAMQIFPPYKLGAAMGMVGLVIMFAPAVGPTLAGIVLGVASWRWIFWLFVPFLVIAFGFAVTSLKNIAEVTRPKVDFLSIILSTVGFGSLVLGVSLASDQGWGSVSVIGALVVGILVLAWYTHRQLNVDKPILNLRAFAIPGFRIGASLVMINFGIILSAMYLLPMYIQKGLLLPVALTGMIMFPGGLMNAIVSAISGRLYDHVGAQMPARLGFIISMVGALMLALTSTQTAIWYVILAHIILMIGAPLAMSPSQTHGLNALTGPIAADGSAIMNTLQQIVGAIATAIATSLLGIGQAAYLATGAHQAAGAFVNGAHYGFYFTFGLALVGFLLALRLPKMMK

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Crispr_ID: NZ_CP031185_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP031185_2

2398891-2399162

Orphan

I-E,II-B

Consensus_repeat	Method
GGATCACCCCCACACCTGTGGGGAATAC	CRISPRCasFinder
GGATCACCCCCACACCTGTGGGGAATAC	CRT
GGATCACCCCCACACCTGTGGGGAATAC	PILER-CR

4 spacers

The CRISPR arrays of NZ_CP031185_2

>merge|NZ_CP031185|2|2398891-2399162|CRISPRCasFinder,CRT,PILER-CR
GAAATGCCCCCACACCTGTGGGGAATACTGACAACCAAAAAATATACGACTTTAACTTCTGGGATCACCCCCACACCTGTGGGGAATACCGGAAAGTTTAAATCTATTAAAGACGCACAATAGGATCACCCCCACACCTGTGGGGAATACCCGGTATGCGTATCGAAGAAGTCCCAACCAATGGGATCACCCCCACACCTGTGGGGAATACGATGAATAAGAAAAGAAAACAAAATAATACGCAGGATCACCCCCACACCTGTGGGGAATAC

>NZ_CP031185|2|2|2398891-2399162|CRISPRCasFinder
GAAATGCCCCCACACCTGTGGGGAATAC	TGACAACCAAAAAATATACGACTTTAACTTCTG
GGATCACCCCCACACCTGTGGGGAATAC	CGGAAAGTTTAAATCTATTAAAGACGCACAATA
GGATCACCCCCACACCTGTGGGGAATAC	CCGGTATGCGTATCGAAGAAGTCCCAACCAATG
GGATCACCCCCACACCTGTGGGGAATAC	GATGAATAAGAAAAGAAAACAAAATAATACGCA
GGATCACCCCCACACCTGTGGGGAATAC

>NZ_CP031185|2|1|2398891-2399162|CRT
GAAATGCCCCCACACCTGTGGGGAATAC	TGACAACCAAAAAATATACGACTTTAACTTCTG
GGATCACCCCCACACCTGTGGGGAATAC	CGGAAAGTTTAAATCTATTAAAGACGCACAATA
GGATCACCCCCACACCTGTGGGGAATAC	CCGGTATGCGTATCGAAGAAGTCCCAACCAATG
GGATCACCCCCACACCTGTGGGGAATAC	GATGAATAAGAAAAGAAAACAAAATAATACGCA
GGATCACCCCCACACCTGTGGGGAATAC

>NZ_CP031185|2|1|2398952-2399162|PILER-CR
GGATCACCCCCACACCTGTGGGGAATAC	CGGAAAGTTTAAATCTATTAAAGACGCACAATA
GGATCACCCCCACACCTGTGGGGAATAC	CCGGTATGCGTATCGAAGAAGTCCCAACCAATG
GGATCACCCCCACACCTGTGGGGAATAC	GATGAATAAGAAAAGAAAACAAAATAATACGCA
GGATCACCCCCACACCTGTGGGGAATAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP031185.1\|WP_011668943.1\|2401876_2402791_-\|prenyltransferase	unknown	unknown	gnl\|CDD\|260125
NZ_CP031185.1\|WP_011668950.1\|2411073_2412696_-\|glycoside-hydrolase-family-43-protein	unknown	unknown	gnl\|CDD\|226038
NZ_CP031185.1\|WP_107696508.1\|2407492_2408200_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031185.1\|WP_011668834.1\|2383912_2384818_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031185.1\|WP_011668940.1\|2399301_2399832_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP031185.1\|WP_139560191.1\|2400927_2401719_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|272861
NZ_CP031185.1\|WP_107696507.1\|2408513_2410394_-\|DUF2207-domain-containing-protein	unknown	unknown	gnl\|CDD\|378333
NZ_CP031185.1\|WP_021742666.1\|2382736_2383549_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NZ_CP031185.1\|WP_139560190.1\|2392581_2393724_+\|ArgE/DapE-family-deacylase	unknown	unknown	gnl\|CDD\|181490
NZ_CP031185.1\|WP_011668944.1\|2402892_2406009_-\|YfhO-family-protein	unknown	unknown	gnl\|CDD\|370572
NZ_CP031185.1\|WP_011668945.1\|2406269_2406791_+\|QueT-transporter-family-protein	unknown	unknown	gnl\|CDD\|377623
NZ_CP031185.1\|WP_011668937.1\|2395413_2396013_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|379199
NZ_CP031185.1\|WP_011668935.1\|2393826_2394840_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|200578
NZ_CP031185.1\|WP_011668936.1\|2394971_2395337_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031185.1\|WP_087609220.1\|2407188_2407377_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP031185.1\|WP_041815768.1\|2399977_2400913_+\|daunorubicin-resistance-protein-DrrA-family-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|130256
NZ_CP031185.1\|WP_042255273.1\|2384909_2388698_-\|helicase-exonuclease-AddAB-subunit-AddA	unknown	unknown	gnl\|CDD\|274299
NZ_CP031185.1\|WP_011668939.1\|2397419_2398730_+\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NZ_CP031185.1\|WP_011668938.1\|2396155_2397139_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381309
NZ_CP031185.1\|WP_011668933.1\|2388681_2392287_-\|ATP-dependent-helicase/deoxyribonuclease-subunit-B	unknown	unknown	gnl\|CDD\|213736

Protein	Function_ID	Function_description	E-value
NZ_CP031185.1\|WP_011668943.1\|2401876_2402791_-\|prenyltransferase	gnl\|CDD\|260125	cd13962, PT_UbiA_UBIAD1, 1,4-Dihydroxy-2-naphthoate octaprenyltransferase. Human UBIAD1 is an enzyme involved in the synthesis of MK-4. Menaquinones (MKs, also called bacterial forms) are one of the two forms of natural vitamin K, the other being the plant form, phylloquinone (PK). All forms of vitamin K have a 2-methyl-1,4-naphthoquinone (menadione; K3) ring structure in common. At the 3-position of the ring, PK has a phytyl side chain while MKs have several repeating prenyl units. Prenyltransferases (PTs) catalyze the regioselective transfer of prenyl moieties onto a wide variety of substrates and play an important role in many biosynthetic pathways.	1.05209e-57
NZ_CP031185.1\|WP_011668940.1\|2399301_2399832_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.64201e-15
NZ_CP031185.1\|WP_139560191.1\|2400927_2401719_+\|ABC-transporter-permease	gnl\|CDD\|272861	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family. The seed members for this model are a paralogous family of Mycobacterium tuberculosis. Nearly all proteins scoring above the noise cutoff are from high-GC Gram-positive organisms. The members of this paralogous family of efflux proteins are all found in operons with ATP-binding chain partners. They are related to a putative daunorubicin resistance efflux protein of Streptomyces peucetius. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.	8.11446e-16
NZ_CP031185.1\|WP_021742666.1\|2382736_2383549_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	1.24988e-19
NZ_CP031185.1\|WP_139560190.1\|2392581_2393724_+\|ArgE/DapE-family-deacylase	gnl\|CDD\|181490	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NZ_CP031185.1\|WP_011668944.1\|2402892_2406009_-\|YfhO-family-protein	gnl\|CDD\|370572	pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family.	3.69128e-73
NZ_CP031185.1\|WP_011668945.1\|2406269_2406791_+\|QueT-transporter-family-protein	gnl\|CDD\|377623	pfam06177, QueT, QueT transporter. This family includes the queT gene encoding a hypothetical integral membrane protein with 5 predicted transmembrane regions. The queT genes in Firmicutes are often preceded by the PreQ1 (7-aminomethyl-7-deazaguanine) riboswitches of two distinct classes, suggesting involvement of the QueT transporters in uptake of a queuosine biosynthetic intermediate.	2.03886e-36
NZ_CP031185.1\|WP_011668937.1\|2395413_2396013_-\|SDR-family-oxidoreductase	gnl\|CDD\|379199	pfam13460, NAD_binding_10, NAD(P)H-binding.	8.82255e-28
NZ_CP031185.1\|WP_011668935.1\|2393826_2394840_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|200578	cd10954, CE4_CtAXE_like, Catalytic NodB homology domain of Clostridium thermocellum acetylxylan esterase and its bacterial homologs. This family is represented by Clostridium thermocellum acetylxylan esterase (CtAXE, EC 3.1.1.72), a member of the carbohydrate esterase 4 (CE4) superfamily. CtAXE deacetylates O-acetylated xylan, a key component of plant cell walls. It shows no detectable activity on generic esterase substrates including para-nitrophenyl acetate. It is specific for sugar-based substrates and will precipitate acetylxylan, as a consequence of deacetylation. CtAXE is a monomeric protein containing a catalytic NodB homology domain with the same overall topology and a deformed (beta/alpha)8 barrel fold as other CE4 esterases. However, due to differences in the topography of the substrate-binding groove, the chemistry of the active center, and metal ion coordination, CtAXE has different metal ion preference and lacks activity on N-acetyl substrates. It is significantly activated by Co2+. Moreover, CtAXE displays distinctly different ligand coordination to the metal ion, utilizing an aspartate, a histidine, and four water molecules, as opposed to the conserved His-His-Asp zinc-binding triad of other CE4 esterases.	1.66375e-79
NZ_CP031185.1\|WP_011668950.1\|2411073_2412696_-\|glycoside-hydrolase-family-43-protein	gnl\|CDD\|226038	COG3507, XynB, Beta-xylosidase [Carbohydrate transport and metabolism].	0
NZ_CP031185.1\|WP_107696507.1\|2408513_2410394_-\|DUF2207-domain-containing-protein	gnl\|CDD\|378333	pfam09972, DUF2207, Predicted membrane protein (DUF2207). This domain, found in various hypothetical bacterial proteins, has no known function.	3.06907e-110
NZ_CP031185.1\|WP_042255273.1\|2384909_2388698_-\|helicase-exonuclease-AddAB-subunit-AddA	gnl\|CDD\|274299	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP031185.1\|WP_011668939.1\|2397419_2398730_+\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	4.97728e-143
NZ_CP031185.1\|WP_041815768.1\|2399977_2400913_+\|daunorubicin-resistance-protein-DrrA-family-ABC-transporter-ATP-binding-protein	gnl\|CDD\|130256	TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other].	6.47864e-106
NZ_CP031185.1\|WP_011668933.1\|2388681_2392287_-\|ATP-dependent-helicase/deoxyribonuclease-subunit-B	gnl\|CDD\|213736	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP031185.1\|WP_011668938.1\|2396155_2397139_+\|aldo/keto-reductase	gnl\|CDD\|381309	cd19083, AKR_AKR11A1_11D1, AKR11A and AKR11D families of aldo-keto reductase (AKR). Bacillus subtilis aldo-keto reductase IolS, also called vegetative protein 147 (VEG147), is a founding member of aldo-keto reductase family 11 member A1 (AKR11A1). It is able to reduce the standard aldo-keto reductase (AKR) substrates DL-glyceraldehyde, D-erythrose, and methylglyoxal in the presence of NADPH, albeit with poor efficiency in vitro. Bacillus aryabhattai aldo keto reductase is a founding member of aldo-keto reductase family 11 member D1 (AKR11D1).	1.4297e-166

>NZ_CP031185.1|WP_011668939.1|2397419_2398730_+|NCS2-family-permease
MQRIANFFHFEELGTNYKTEILAGLTTFVSMAYILFVNPQVLGASGISQGAVFTATAFASAFGCMLMGILANYPIAISASLGINAFFAYSVVIGMKVPWQTALAGVFVASILFMILTAFKLREKVVDAIPRDLKMAISAGIGLFIAFIGLSQGGLVAADKSTIVSLGSLQVGSTWLTIFGLLVTVLLMSARVPGAIFIGMVANSILGLVTGLIPMPSHIVAAVPSISSTFMVGLTHVGSINSLQMIVVVLTFLLVTFFDTTGTLVGLAEQAGLVKNNKLPRIGKALMADSSTMVVGSLLGTSPMGAFVESSAGIAVGGRTGFTAIVTGILFIFGAFFSPLLAVVTDQVTAPALIIVGVLMAQSLKNIHWEKFEVAAPAFLIVLGMPLTYSISDGIALGFITYPLTMLAAKRGKEVGAMMYGLAVVFVLFLWILNAA
>NZ_CP031185.1|WP_011668938.1|2396155_2397139_+|aldo/keto-reductase
MTHELVTLGKTDVRTTPLGLGTNAVGGYNLFPNLKDDDGLNLVKAGLNHGIQLLDTAFVYGLGHSEELVGQAMHDFDRHSFTLATKGAQDFSSGEQVINNDPAFLTAQVDASLKRLNTDYLDIYYIHFPDKQTPKAEAVGALQRLREQGKIRAIGLSNFSLVQVKEANADGYVDVVEDEFSLLHRDHETDLMPYLADHQISFVPYFPLASGLLTGKYDQSVQFPADDIRSQISDFQEPRYSQALTAIDQVRPIAQAHQATVAQTILAWYMQNPLVSVVIPGAKRAAQVEANAQALEVTLTAAEYQTIDTAFAGFKATANGKSLADPD
>NZ_CP031185.1|WP_011668937.1|2395413_2396013_-|SDR-family-oxidoreductase
MTTYLIIGANRVGQLVARQLATESATVRLLHDGKETLPSDLATQVTELTGDLTQEATYTAALQDQPIIFSALTGMDVDLAFEALFDAQYHQRLTFQRFVMLSTAGVDQEVTGDLAYPGITDVAEYLKQQRYAAKLVDEAEFPYTILRPVTLADSPRRDPQIIKEGAAVPAGTVSRETVAQVAVSLLQAGGADYQSLAIC
>NZ_CP031185.1|WP_011668936.1|2394971_2395337_-|hypothetical-protein
MALQIDEQQLQAIRERMDEANQRAHFVIFQSVERESGKVLRLITDIDSFRAIQEQHQDDSDMVIIQDIVPITDTLARWAVAENMAAQQGDNAEVLADLERYTNEVLKENHQTVNPPESTDD
>NZ_CP031185.1|WP_011668935.1|2393826_2394840_-|polysaccharide-deacetylase-family-protein
MVKIGKVLGVLVATVALGVGSVPVTGQAKSTNKTVTFGQLTNKNTHRLAAIRQAARQEILTTTKAKSSRVAAVYQVKLPTHMTKTATLTKSGLRMNLLKNSFKVKQITIPYAQLKGKVLNRYLPKANRTSTIKTSKLVALTFDDGPDPTLTSRLLKTLKKYHAHATFFEVGQSVSRYPKISRAVLAGGNEIGNHSWNHPNFNSIGTAQTVSQVTRTNRAIYQATGTLPQYVRPPYGNITAAEGRAIEQPIIRWSVDSRDWAYLNSSKDINEVMHDTHGGDIILMHDIHAQSVAAAPTIIKRLQAKGYKLVTVSQLLNSQALPGLQYFGAHDYRTVGK
>NZ_CP031185.1|WP_139560190.1|2392581_2393724_+|ArgE/DapE-family-deacylase
MEDSEQIQILQHLISINSVNDHEADVAAYIQQLFADHGITSQVIPYADGRANIIAEIGDTTSDQVFALAGHLDTVATGDVADWKFDPFSAHIVDNQLYGRGAADMKSGLAAMVITLINLADQQTPLTGRLRFIGTVGEENGAMGSRMLTEKGVADDLTAMVIGEPTGGNLVYAHNGSLNYHVYSRGVGAHSSMPEKGINAITNLIKYVTAEATAFDDAPVSPELGPLVHSVTVFNGGEQVNSIPAKAELQGNIRPIPEFDNTAVIHRLHETVDRLNQEPGVDLALHVDYSFKPIISAKDSPLVQTTKAIADQEFGHAIDLQVIHGATDASEFTKSSHDFPVIVYGAGKWDAAHALNESVDLDEFRHVQRVYQQLVEKFLS
>NZ_CP031185.1|WP_011668933.1|2388681_2392287_-|ATP-dependent-helicase/deoxyribonuclease-subunit-B
MSLQFILGSAGQDHRTPMVTALAQQVTAHPTDQSYYLVPNHIKFETEVDVLSALKEQIAPEQALFAQTQVQVFSFTRLAWFFMKNEPIYQLPRISPAGLNMLIYQIIQTHADELTIFRGEVDRPGFVSQLATQLAEFKVGQVTAADLMSAIEQLDTTNTDLQAKLHDLMIIYEAFETQMMGKFVENTDLLNQLATYLEQQVDLQHAHFYLEGFSQLSAQERQLVAILIQRSASVTVALNLDHGYPQKLPDKTTLFFQSAKLYQQLYMVAQANRVPVLIDQQAKTARVSADLQALDTYWQASQTLSPQPSAVEKPTHIQIVQAANRYVEVSRVATQIRQLVATGNYRYRDFLVLTRHLDAYQTVIDPIFQAQAVPYFDDADIRMADHPFVELLNALFDVQRRNYRYADVFRVLKSELLLPRDADGELMAVPAYRQALALTENFVLKNGLEGQHWWTQDKDWVYNRFAVGDGGVQTTRDDQISAQINRIRRFVKQTLPPFFARLKVAATYTDAAAVLYQFVANAGVSERLMTWRDQAIAAGDLTKAGQPEQTWAAFCDILDEFHTILGDLPTVLPDFQALLQAGFAGAKFSQIPSTLDQVVISESGIVQANNRKITFIMGATADTMPDNQIPTTLLADNDRQDLSARLQQVDDGTYLRDDAATQLAGEPYLNYLAFMSGSERLIFSYPAMSDDARSGLQLSPYVARIKDYFGLSIDIAAANPVAEDEAILPFVGTRRTTLRHLVQASHDSQLREVPLSRSWLYVLNLLRTDPTYGELTTKLLGSLSYRNVPTQLTPDIVTQLYGTKINTSISKLEEYYANPYAYFLKYGLNLQERDVFALSPASTGEFFHATLDGLMKLVNDQKLNLAALDDQQLREMTDEVMAKLLDTTENPQFAILESSHRMGYIRQQLMKTMRQMAKTLQEQSKRTKLRPKRTEVQFGLGDERGLAALSFDVGKRRQVTVRGRIDRLDAVQVKDKTYLGIVDYKSSEHKFSYQEAYYGRAMQMLTYLDAVKQNLPTLLDAPTAKDAELAGAVYLHLQNPILKAAEVLGEDPLTSLLKAEQYQGLLLDDPDLLTNLDTLFGTPDYSGSSLLFRGLRRTKTGKITSYGKLLVNSNELDLLLTHTERLIKRAATDIFDGRVDLAPFREQNRTALQYSPYKSVMQFDPLLKENNYRDLPSLNKDDVMARIAAEQEQEATDEHEI
>NZ_CP031185.1|WP_042255273.1|2384909_2388698_-|helicase-exonuclease-AddAB-subunit-AddA
MSTKFSFTPSQDQAIHQTGNNLLVSASAGSGKTRVLVQRVIERLKTGVGIDQILIVTFTKAAAAEMRERIQTALRQELAVSQGDSAQQQFYLRQLNQLPVADISTLDAFCLRLLQRYYYVIDLDPVFRLLADETENGLLRDEVWADLREDLYANDDSGLFARLTENFSGDRNDQGLADLVQQTYTFANATPNPTAWLAELPQPYQLDSDQLMTTSFYQQRLRPFFQSQLQQLQADLTSAQALANQAGLDKQAAHVTAVLENVAAVQQLVTGDSWNALRAAIQDFAWGRMPAVRKTNEDYPIYNELKTTYYDPARKQLDSLKKTYLIQDEQQAMTTIRRSGELVGELSRVVTAFRTAYRQEKQRRHVLDFADVEHAALAILTQDSDQSRQVAAQLRHQFAEIMVDEYQDTNGLQEAILTAIAEPAPQGNLFMVGDVKQSIYRFRQADPTLFMTKTDQYAADAAAGELIVLAENFRSMKNVDDFTNLIFKQLMDRELGEIDYTGAAQLKFGASYYPDTVTSTAELLVYLTEDAPESAGDADSEAMDATFQVDNKHQGEVLMVGQKIQQLIADQTPIYDREAKQVRPMTYGDITLLTPTRTNNLIITDELRRLGIPVVVNDAQNYFKTTEIQIMMALLQIIDNPYQDIPLAAVLRSPIVGLNENELALLRINQRTGDYYQAVLHFQRSFVPNQASDFQQAVYQKVSHFLEQLQEFRDIAQQDELVTLIWRIYQETGFLDYVGGMPAGEQRQANLHALYERAKSYEQSSFKGLFQFVRFVERLQERDDDLAGAPVQAADDAVSVMTIHGSKGLEFPVVFIMDASRQFNKQDQQGNYVMSGKTGIGIDYLDPDSRVKAPSLQKLVTAQAISRASLAEEMRKLYVALTRAESRVYIVGSHKTQEAAISAWEQAYQSPNLVLNATLREKNTLANYLDWIGMCLVRDPKFAAELRQGTTTFSGLAGDPATFAVHFVTAHDLGPTQGVNETAVDWLQAASETAAKVTTPPVDTEQLHQIMDFRYPHQAATATTAYQSVSEAKRLFEDPDNATIGEYQASATGQVGGHRFVTHDFARPDFLQTVREPLATEIGSATHLVLQQLDVTVTPTLDRVQGVIDQLVADQVLTAEVAQRIQPELILRFFSSSVGQQVLAAPDQLHREVPFSLLMPARSLFQDFQETDSQVLVHGIIDGYLTTPAGVILFDYKTDHVNAQNQAASIEKIVERYGGQVNLYAAALKQMTGQPIVGQYLYLLAIGELVAVPEQQVRRLSE
>NZ_CP031185.1|WP_011668834.1|2383912_2384818_+|hypothetical-protein
MTIITRIIKGCLCLLALGTVTVGSLSGRAQTEKPSALVKVGDYRASTDFLNLSAYYQTIRPVTVKVAYVSTYKTQHTIMQKLTLPAGLTVAGNLTTTKHGSYLVPSLQLYLARLSYPALQNSAKANYTLDPGTSAYSPQATISDTTKLRAFKRVAAPDYMPGYSHGDLYIGGAKAALSPVEPTTKSIRITPDGYVEVLKYDTKANAGLGFYQKPVSLAKIVKTRFHDPNRTLYLNHPLASVKTKAITQNGQTRYRLTLKNLHTPQHIAGDPETGTAGTFDSLYSIGGTTYYTFIGYDGVSN
>NZ_CP031185.1|WP_021742666.1|2382736_2383549_-|helix-turn-helix-transcriptional-regulator
MAYLGIITENFTRRFGIMGWDLQFTHYLDDMQTYRSRDQTAKALILLGYVERDFIRFYRAGRIAEGIQFAKENLARSRLLLNELPPQQKRAQLHGLVDILAFEGVQNHAFIYEFIQLRDDYHRQIKTLPVTTARYVPWIIEIVQDFGNLAAKDGLPYDDHLESTLDIIYYVSAHLRDKLTVKQVVDHVNQRCNPVGVQRAFSDEMQMSIRDYINVKKIREAQRALLTTTVSVKQIAQELGFYDTSDFSKRFKREIGQTPLEYRQINSQKD
>NZ_CP031185.1|WP_011668940.1|2399301_2399832_-|MarR-family-transcriptional-regulator
MSDLFKQETTASKLIEFGMLRHVADDIADRDDDHPERQMIFQGQGKILLALMQEDHLAQKELAERLNLTAQSTAEFVRKLEKKGFVTRMKSPTDQRVTVVSITDAGRKETTKNVQQIPPFLTILDDTELDQLAHILDKVNQHMYEEVNAANPTWFNKFHQVIMNRMLSQLHSGEDR
>NZ_CP031185.1|WP_041815768.1|2399977_2400913_+|daunorubicin-resistance-protein-DrrA-family-ABC-transporter-ATP-binding-protein
MQPSTAITVSHLSKTFGVKTVVDDLSFAVKPGEVFGLLGPNGAGKTTTLRMMTTLLKATSGTVTIFGHDVRKESRLARAMFGLTGQYASIDEDISARENLMIFSRLNGLSRTAAKQRTTELLEEFSLTASANKALSDFSGGMRRRLDLAVSLITRPGLIFLDEPTTGLDPRTRSQMWTTIRQLVAHGSTIVLTTQYLDEADALADRIAVIDHGKLIKLGTPTALKQQIGGATLTLSLAKATQGPLAQRLLAQALHAQPTLHGAQLTAHLENPNQITDLLVQLQAADISLANIAVQEPSLDDVFFALTTGKN
>NZ_CP031185.1|WP_139560191.1|2400927_2401719_+|ABC-transporter-permease
MEIQTQHGNLIGNTLTMAYRNLLKTLHNPDRFMDVIIQPVMFMLLFGYLFGGAIAGGVQAYLPTIVPGILIQTLLSAASGSGAQIREDLDSGVFDRFKSLPMAHIAPLAGQLFADILRLLVATVVSLLTGYAMGWRPTAGFGWIIVIAALAIFIGWAISWVFALFGLLAKSSSMVQSVSMMVMMLLSFLSNAFIPLKTLPHFMRVIADANPIQSHPITYVITAIRQILAQGAWNNNAWIVLIFGIGIVVLFAPLTVWAYNHNN
>NZ_CP031185.1|WP_011668943.1|2401876_2402791_-|prenyltransferase
MPKWLNWSVFYELTEIYTAPLNVMWFILGAAIVQYHVHTVDWINVGLCLAVVFIFDLAVNVADNYYDYLHAHDREDYAQKTNPIGRLHLPAKGVFWLAWVLYAVAAIPGIVLVMRTGWSVAVFGVVGYLIGIFYTAGPHPINATPVSAAVVALAIAFGIQLTCVYVSIYGQQPLSWSIVGTTFLLCMPLTLIFFTVQLANDTSDRDEDIANHRYTLAVYLGKRRSVRLIQLFLVIGTLWTLVNVGLGLAPLVTALAVILLPVMWRGMRPFFAIQDKRKTFMAMVKSASLFFIAYPVLFALGTWL
>NZ_CP031185.1|WP_011668944.1|2402892_2406009_-|YfhO-family-protein
MRIAHHRWPLWVLYTLAFAVIAAISFGIFGVANRTLIWNMDGITQHYPLIREFHQLLMKSGLAGVTGWSWTFGLGADKLTTLAYYVLGDPFAYALALLPTRLLEVGYGWAIVLRLYAAGLAFLVLAKRYAFKPGSQLVGAVTYAFTGYSLMVGVHHPFFLLPMVWLPLLFVGIDRILQGKGWGFLAAVTGITILSNFYFAYILGLGSLIYALIRYFSCRERGQLAVSWLVATARFLAAAVTGLLISGVLLLPSLLMMLKSTRTVSIFANGLWLYPLNYYLTLSNTILTTGNTLNYWAVLGITGFGFLGCVYTLVHWRQHRWLAITLLAVIVGLLFPAVAAFFNVLSTPSNRWILLAAVPFGLALMTLMDHLTALSLPDRWWLLGSSFGLLGVIYLSNGFTFSNPARDLLTYGLLLATTLLVVVALPRRWTFGGIGILIGLNLINNAWGYYDPNLSNQATQQLRVSDATRYIQDYFDGAQSAVQSDHAFSRVSATRNYNLFRTVGNNMTMSHGLHGIMSYFSVQNGYVGQFSRDLGNAEYAMNAPMGQADDRTTLTQLLGVKYLFARTDQVTNHAALPYGYRAAKKIYPEQPVYGLSNGVGTQVLTTNLAFPLVYTQPQVLTTKAWHRLSLVDRERSLTQAAVTSQPVAGVKAAHYQSPKRTLAYTVTPDTIPVIDSTNKVIQYRLKQAAAGQKTGLNDKQLATYGTTIQTPQLTVDKNGLLSKQEVQQYGPMVQLNRDQAALQRVLTHNQQIIQRTTQANQTGLHQLTSDAQGQPIKYTVTLKHPQQAQGTELYLELDGISSQQLTTKDQLQTADNTSVLGNTPRSNLTKLNAWRTAISNPDLGDYWVTAKTRNATKTFSQFGLDNLSDYEPKHQVLLNLGYSQQLRKTIDVTFNATKQLNIKSAKLIAVPFGARYDQQVHAVQRRGLQHAQIRDNAVTGELTTPQASVMTTSIPYSSGWRLTVDGRPTATTVVNEGFVGARLAAGTHRIRLTYRTPGLIGGLILTIVGLVVWLGEMSWWHWRHPQAKTRATKSKSDA
>NZ_CP031185.1|WP_011668945.1|2406269_2406791_+|QueT-transporter-family-protein
MNSKKRVSGVSDTRSMVLAALIAALYVVLTTVLSALSFGPFQIRLSEMFNHLVVFNKRYIAAVTLGVFIANIIASPFGFLDIATGTIQTLLALLVMYWLSKFVHNRIAQMAINTVVAVFFMCMIAWEIAIVSKTAFWPTFWANWLSIGWGELVSMIFGGVVIYLLSLKIDFTK
>NZ_CP031185.1|WP_087609220.1|2407188_2407377_+|hypothetical-protein
MHIQKLAGHFAALIAVMSHVGKAECKTKAIRFITARLNHQGITLPQPVISAAVEKAFSYTNI
>NZ_CP031185.1|WP_107696508.1|2407492_2408200_-|hypothetical-protein
MRTKHAMDIGAREKTKSGYKPIYIKKNKLLSISAMNIRGKYPHFKTYVAVTLGDIHYAKINKVVYMKKFIRYTTANFTPVKTLRAPIRTQLLRQGTGFVMSSTHINQPTYSSALFVTLDNYIQTYSQARMTKINDKWMNADVDSDFAKLKPTDSVKVTKLVKTGTAYKIDYARPLKSFSDKKIGPHHYRLTIKQLGRQYQNYTPIDDTYDTAASWTNFTINTKPYFSGFADWGLD
>NZ_CP031185.1|WP_107696507.1|2408513_2410394_-|DUF2207-domain-containing-protein
MVVFRGYATLKPNRIGGGVLMRYRQGVWWLLGLILALIGGCQMTTINAAASYTIKPFRMNVDVTRRGDANVTETMTYHFDDDYHGVYNVQDLRGIQGGRLTGVSTRLNDGGMRPARAVDSGDSRYQVSQSNQRLKVKVYRAVSAGDRLQVTYRFHLTGVVTNYADTAELNWKLIGAGWDEPLHNVRLTIQLPTQPVKQLQAWTHGPLTGHTAVQSKTGRVVMTIPENPANTFVESHLLFPTQVTAANPNTCTQKRRAAAQKQEAKLAADANAKRQQQRWLVVGGYAALTVGLVALLAGSYHWMRHHPANRYPHPIPVDHFFDVPGVAPAVAVALLNFRSPDTDALSGELMMAASRHEIKLEPVREKKHDTVRLTKTGTVTNIFLQRAFERLGSLDSFTLRDLKQFAKKDKGSRVSHWFKEWQNQVDEAAEVYQDGDNIAIRQRLLGIAWGLTFVIAAWIGVSALVDPLVFKLSAGLGLVVLFGSWTYISRQRRQVDRNTAEGLVLINEIGGFRRMLKDIGHFNTAKIGDLILWEQILPYAAAFGLAKQVADKLAIDFGKDVVAGALVAYPLYYPGAFNLSLGDMVQTSIAGAIDTSANFSSPSGGSGGFSGGSSGGFGGGSGGGAF
>NZ_CP031185.1|WP_011668950.1|2411073_2412696_-|glycoside-hydrolase-family-43-protein
MKIQNPVLPGFNADPSMIRVGDTYYIANSTFEWFPGVRLHESKDLVHWNLLPSPLSTTTLLDMKGNPASGGIWAPDLSYADGKFWLIYTDVKITEGPFKDMTNYLTTATDIRGPWTDPIAVNGVGFDASLFHDENGRKYLVQQTWDHREYHHPFNGITLTEFDTATMQLKPETARNIYNGTDVKLVEGPHLYQINGYYYLFAAEGGTVFTHQEVVARSKTLDELSFESEPDGPFITNMDTPDFYLQKQGHGALTSTPSGEWYYASLVSRPWNHTNESSHDPRGWSTLGRETSIQKVEWDDAGWPRVVGGHGGQVEVDAPKDAIETTAPKDHSQHDDFDQPTLDLNWNTLRQPFTAQMGSVGNGELKLIGQQTMSSNFDVSLIARRWQAFNFDAETKVKFDPFTYQQMAGLANIYNDKHYSWIFITWDEKKGHVIEVAQNDNNNYTSYLKDDAIKIPDGTDYVWFRTKVRKQSYTYEYSFDGQNWETVPVELDAAILSDDYVLQNYGGFFTGAFVGLMAADYAGYKRVATFDYFDYQELPD

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP031185_2	2.1\|2398919\|33\|NZ_CP031185\|CRISPRCasFinder,CRT	2398919-2398951	33	MN830254	Lactobacillus phage JNU_P2, complete genome	17234-17266	1	0.97
NZ_CP031185_2	2.1\|2398919\|33\|NZ_CP031185\|CRISPRCasFinder,CRT	2398919-2398951	33	MN830255	Lactobacillus phage JNU_P4, complete genome	3757-3789	1	0.97
NZ_CP031185_2	2.4\|2399102\|33\|NZ_CP031185\|CRISPRCasFinder,CRT,PILER-CR	2399102-2399134	33	NZ_CP014920	Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-5, complete sequence	5729-5761	1	0.97
NZ_CP031185_2	2.2\|2398980\|33\|NZ_CP031185\|CRISPRCasFinder,CRT,PILER-CR	2398980-2399012	33	NZ_CP014917	Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-2, complete sequence	23424-23456	2	0.939
NZ_CP031185_2	2.4\|2399102\|33\|NZ_CP031185\|CRISPRCasFinder,CRT,PILER-CR	2399102-2399134	33	MK496698	Capybara microvirus Cap1_SP_87, complete genome	2934-2966	7	0.788
NZ_CP031185_2	2.4\|2399102\|33\|NZ_CP031185\|CRISPRCasFinder,CRT,PILER-CR	2399102-2399134	33	NC_017296	Clostridium acetobutylicum EA 2018 plasmid pEA2018, complete sequence	62340-62372	7	0.788
NZ_CP031185_2	2.4\|2399102\|33\|NZ_CP031185\|CRISPRCasFinder,CRT,PILER-CR	2399102-2399134	33	NC_015686	Clostridium acetobutylicum DSM 1731 plasmid pSMBa, complete sequence	62340-62372	7	0.788
NZ_CP031185_2	2.4\|2399102\|33\|NZ_CP031185\|CRISPRCasFinder,CRT,PILER-CR	2399102-2399134	33	NC_001988	Clostridium acetobutylicum ATCC 824 plasmid pSOL1, complete sequence	62340-62372	7	0.788
NZ_CP031185_2	2.4\|2399102\|33\|NZ_CP031185\|CRISPRCasFinder,CRT,PILER-CR	2399102-2399134	33	NZ_CP047434	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6	89325-89357	10	0.697
NZ_CP031185_2	2.4\|2399102\|33\|NZ_CP031185\|CRISPRCasFinder,CRT,PILER-CR	2399102-2399134	33	NZ_CP047434	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6	98643-98675	10	0.697
NZ_CP031185_2	2.4\|2399102\|33\|NZ_CP031185\|CRISPRCasFinder,CRT,PILER-CR	2399102-2399134	33	NZ_LR214978	Mycoplasma cynos strain NCTC10142 plasmid 5	6-38	10	0.697
NZ_CP031185_2	2.4\|2399102\|33\|NZ_CP031185\|CRISPRCasFinder,CRT,PILER-CR	2399102-2399134	33	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	771862-771894	10	0.697

1. spacer 2.1|2398919|33|NZ_CP031185|CRISPRCasFinder,CRT matches to MN830254 (Lactobacillus phage JNU_P2, complete genome) position: , mismatch: 1, identity: 0.97

tgacaaccaaaaaatatacgactttaacttctg	CRISPR spacer
tggcaaccaaaaaatatacgactttaacttctg	Protospacer
**.******************************

2. spacer 2.1|2398919|33|NZ_CP031185|CRISPRCasFinder,CRT matches to MN830255 (Lactobacillus phage JNU_P4, complete genome) position: , mismatch: 1, identity: 0.97

tgacaaccaaaaaatatacgactttaacttctg	CRISPR spacer
tggcaaccaaaaaatatacgactttaacttctg	Protospacer
**.******************************

3. spacer 2.4|2399102|33|NZ_CP031185|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014920 (Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-5, complete sequence) position: , mismatch: 1, identity: 0.97

gatgaataagaaaagaaaacaaaataatacgca	CRISPR spacer
gatgaataagaaaagaaaacaagataatacgca	Protospacer
**********************.**********

4. spacer 2.2|2398980|33|NZ_CP031185|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014917 (Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-2, complete sequence) position: , mismatch: 2, identity: 0.939

cggaaagtttaaatctattaaagacgcacaata	CRISPR spacer
cggaaagttcaaatctattaaggacgcacaata	Protospacer
*********.***********.***********

5. spacer 2.4|2399102|33|NZ_CP031185|CRISPRCasFinder,CRT,PILER-CR matches to MK496698 (Capybara microvirus Cap1_SP_87, complete genome) position: , mismatch: 7, identity: 0.788

gatgaataagaaaagaaaacaaaataatacgca	CRISPR spacer
gatgaataataaaagaaaataaaataaactaaa	Protospacer
********* *********.*******  .. *

6. spacer 2.4|2399102|33|NZ_CP031185|CRISPRCasFinder,CRT,PILER-CR matches to NC_017296 (Clostridium acetobutylicum EA 2018 plasmid pEA2018, complete sequence) position: , mismatch: 7, identity: 0.788

gatgaataagaaaagaaaacaaaataatacgca	CRISPR spacer
gaataataagaaaagaaaaacaaataatataaa	Protospacer
**  ***************  ********.. *

7. spacer 2.4|2399102|33|NZ_CP031185|CRISPRCasFinder,CRT,PILER-CR matches to NC_015686 (Clostridium acetobutylicum DSM 1731 plasmid pSMBa, complete sequence) position: , mismatch: 7, identity: 0.788

gatgaataagaaaagaaaacaaaataatacgca	CRISPR spacer
gaataataagaaaagaaaaacaaataatataaa	Protospacer
**  ***************  ********.. *

8. spacer 2.4|2399102|33|NZ_CP031185|CRISPRCasFinder,CRT,PILER-CR matches to NC_001988 (Clostridium acetobutylicum ATCC 824 plasmid pSOL1, complete sequence) position: , mismatch: 7, identity: 0.788

gatgaataagaaaagaaaacaaaataatacgca	CRISPR spacer
gaataataagaaaagaaaaacaaataatataaa	Protospacer
**  ***************  ********.. *

9. spacer 2.4|2399102|33|NZ_CP031185|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047434 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6) position: , mismatch: 10, identity: 0.697

gatgaataagaaaagaaaacaaaataatacgca	CRISPR spacer
gtattataagaaaagaaaaaagaataataaaag	Protospacer
*    ************** *.******* . .

10. spacer 2.4|2399102|33|NZ_CP031185|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047434 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6) position: , mismatch: 10, identity: 0.697

gatgaataagaaaagaaaacaaaataatacgca	CRISPR spacer
gtattataagaaaagaaaaaagaataataaaag	Protospacer
*    ************** *.******* . .

11. spacer 2.4|2399102|33|NZ_CP031185|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR214978 (Mycoplasma cynos strain NCTC10142 plasmid 5) position: , mismatch: 10, identity: 0.697

gatgaataagaaaagaaaacaaaataatacgca	CRISPR spacer
atagaataagaaaagaaaacaacaaaaacatta	Protospacer
.  ******************* * **    .*

12. spacer 2.4|2399102|33|NZ_CP031185|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 10, identity: 0.697

gatgaataagaaaagaaaacaaaataatacgca	CRISPR spacer
atagaataagaaaagaaaacaacaaaaacatta	Protospacer
.  ******************* * **    .*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

674864 : 739450

Streptococcus_phage(21.74%)

tRNA,holin,transposase,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011667382.1\|674864_675908_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA	NA	NA	NA
WP_011667383.1\|675988_677167_-	MFS transporter	NA	NA	NA	NA
WP_011667384.1\|677224_677521_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011667385.1\|677629_679582_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	4.2e-53	31.4
WP_011667386.1\|679814_680453_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA
WP_011667387.1\|680633_680918_+	co-chaperone GroES	A0A221S3C8	uncultured_virus	2.6e-12	43.0
WP_011667388.1\|680973_682599_+	chaperonin GroEL	A0A240F766	uncultured_virus	7.4e-152	53.5
WP_015473419.1\|682990_684826_+	APC family permease	NA	NA	NA	NA
WP_011667390.1\|685079_685886_-\|holin	antiholin-like protein LrgB	NA	NA	NA	NA
WP_080504821.1\|685930_686299_-	CidA/LrgA family protein	NA	NA	NA	NA
WP_011667399.1\|686777_687872_+	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA
WP_087609310.1\|687925_688585_-	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	4.9e-38	47.6
WP_087609311.1\|688659_689979_+	DNA/RNA helicase	A0A1X9I5S6	Streptococcus_phage	3.8e-58	35.6
WP_139560021.1\|689975_690650_+	ComF family protein	NA	NA	NA	NA
WP_011667403.1\|690787_691348_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_011667404.1\|691549_693913_+	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_107696456.1\|693989_695105_+	peptide chain release factor 2	NA	NA	NA	NA
WP_107696455.1\|695149_696370_+\|protease	serine protease	NA	NA	NA	NA
WP_021741445.1\|696374_697082_+	response regulator transcription factor	W8CYM9	Bacillus_phage	7.1e-43	40.3
WP_024525621.1\|697078_698422_+	PAS domain-containing protein	W8CYF6	Bacillus_phage	4.8e-24	34.1
WP_086231761.1\|698571_699495_+\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	2.1e-31	30.7
WP_011667410.1\|699731_700613_+	phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011667412.1\|701538_702423_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_011667413.1\|702435_703260_+	phosphate ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.4e-13	28.6
WP_011667414.1\|703275_704034_+	phosphate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.6e-16	27.7
WP_011667415.1\|704045_704726_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_011667416.1\|704919_705249_+	PspC domain-containing protein	NA	NA	NA	NA
WP_015473430.1\|705249_705621_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_011667418.1\|705709_706645_+	HPr kinase/phosphorylase	NA	NA	NA	NA
WP_011667419.1\|706650_707514_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_011667420.1\|707529_708543_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_011667421.1\|708580_709486_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	1.6e-71	47.8
WP_011667422.1\|709557_710499_+	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	4.2e-83	51.1
WP_011667423.1\|710592_711234_+	HD domain-containing protein	NA	NA	NA	NA
WP_015473432.1\|711230_711755_+	hypothetical protein	NA	NA	NA	NA
WP_011667425.1\|711871_713878_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_011667426.1\|713897_716753_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	4.5e-306	54.7
WP_011667427.1\|716908_717454_+	membrane protein	NA	NA	NA	NA
WP_011667428.1\|717600_718485_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	2.1e-07	28.8
WP_015473435.1\|718481_719492_+	YvcK family protein	A1IMD5	Streptococcus_phage	1.3e-93	52.8
WP_139560022.1\|719494_720433_+	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.9e-53	39.7
WP_011667431.1\|720556_721153_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	2.2e-53	52.8
WP_087609314.1\|721386_721830_+	LytTR family transcriptional regulator	NA	NA	NA	NA
WP_011373852.1\|721773_722694_-\|transposase	IS30-like element ISLsa1 family transposase	Q9MBM9	Staphylococcus_prophage	9.2e-51	38.2
WP_011667433.1\|722911_723625_+	hypothetical protein	NA	NA	NA	NA
WP_011667434.1\|723858_724470_-	ECF transporter S component	NA	NA	NA	NA
WP_011667435.1\|724890_725919_+	SorC family transcriptional regulator	NA	NA	NA	NA
WP_011667436.1\|725987_726998_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_011667437.1\|727177_728380_+	phosphoglycerate kinase	NA	NA	NA	NA
WP_011667438.1\|728524_729283_+	triose-phosphate isomerase	NA	NA	NA	NA
WP_011667439.1\|729390_730710_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	4.1e-169	68.8
WP_047021316.1\|730824_731925_+	hypothetical protein	NA	NA	NA	NA
WP_015473442.1\|731991_733548_+	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA
WP_011667442.1\|733644_733881_+	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_011667443.1\|733965_734724_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_011667444.1\|734727_737121_+	ribonuclease R	Q0GXV6	Lactococcus_phage	1.3e-88	38.6
WP_011667445.1\|737136_737610_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.9e-44	58.1
WP_011667446.1\|737678_738416_+	amino acid ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	8.3e-10	29.5
WP_011373852.1\|738529_739450_-\|transposase	IS30-like element ISLsa1 family transposase	Q9MBM9	Staphylococcus_prophage	9.2e-51	38.2

DBSCAN-SWA_2

807239 : 815593

Lactobacillus_phage(44.44%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_139560032.1\|807239_807581_-	helix-turn-helix domain-containing protein	A8ASM2	Listeria_phage	1.1e-20	51.9
WP_043022770.1\|807744_807990_+	helix-turn-helix transcriptional regulator	A8ASM3	Listeria_phage	9.7e-08	43.8
WP_139560033.1\|807989_808175_+	hypothetical protein	NA	NA	NA	NA
WP_086231641.1\|808163_808412_-	hypothetical protein	NA	NA	NA	NA
WP_069360054.1\|808793_809300_+	hypothetical protein	NA	NA	NA	NA
WP_085768829.1\|809305_809617_+	DUF771 domain-containing protein	NA	NA	NA	NA
WP_097547572.1\|809887_810181_+	hypothetical protein	NA	NA	NA	NA
WP_015474119.1\|810171_810387_+	hypothetical protein	NA	NA	NA	NA
WP_139560034.1\|810387_811449_+	recombinase RecT	D7RWF9	Brochothrix_phage	4.8e-59	51.5
WP_128491763.1\|811375_812239_+	hypothetical protein	A0A0P0IZH9	Lactobacillus_phage	1.6e-76	50.9
WP_139560035.1\|812250_813177_+	DUF4373 domain-containing protein	A0A0H4TKJ7	Bacillus_phage	3.7e-15	35.2
WP_139560036.1\|813188_813899_+	toxin Bro	A0A059NT90	Lactococcus_phage	6.3e-31	35.0
WP_051053382.1\|813891_814335_+	RusA family crossover junction endodeoxyribonuclease	D6PSU4	Lactobacillus_phage	5.8e-43	61.8
WP_139560037.1\|814450_814879_+	hypothetical protein	D6PSU8	Lactobacillus_phage	5.5e-22	61.0
WP_139560038.1\|815116_815593_+	DUF1642 domain-containing protein	A0A2K9VC25	Lactobacillus_phage	6.9e-50	65.3

DBSCAN-SWA_3

820368 : 845928

Lactobacillus_phage(100.0%)

plate,tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087609355.1\|820368_820575_+	hypothetical protein	D6PSW6	Lactobacillus_phage	1.5e-22	98.0
WP_139560195.1\|821347_822691_+\|terminase	PBSX family phage terminase large subunit	D6PSX1	Lactobacillus_phage	3.9e-167	99.3
WP_139560039.1\|822706_824068_+	DUF1073 domain-containing protein	D6PSX2	Lactobacillus_phage	9.5e-262	99.3
WP_087612860.1\|824070_824898_+	hypothetical protein	D6PSX3	Lactobacillus_phage	1.9e-132	98.8
WP_139560040.1\|824881_825208_+	LysM peptidoglycan-binding domain-containing protein	D6PSX4	Lactobacillus_phage	1.1e-19	96.0
WP_139560041.1\|825219_826323_+	DUF2213 domain-containing protein	D6PSX5	Lactobacillus_phage	1.0e-157	89.6
WP_042254689.1\|826337_826802_+	hypothetical protein	D6PSX6	Lactobacillus_phage	6.4e-77	98.7
WP_042254688.1\|826816_827695_+	DUF2184 domain-containing protein	D6PSX7	Lactobacillus_phage	1.6e-161	99.3
WP_015474101.1\|827705_828068_+	hypothetical protein	D6PSX8	Lactobacillus_phage	3.6e-59	100.0
WP_139560042.1\|828079_828406_+	DUF4054 domain-containing protein	D6PSX9	Lactobacillus_phage	6.6e-52	95.4
WP_139560043.1\|828402_829005_+	hypothetical protein	D6PSY0	Lactobacillus_phage	7.8e-107	97.0
WP_139560044.1\|829004_829379_+	hypothetical protein	D6PSY1	Lactobacillus_phage	5.0e-64	94.4
WP_069360084.1\|829371_829842_+	hypothetical protein	D6PSY2	Lactobacillus_phage	2.3e-61	98.3
WP_139560045.1\|829854_830892_+	DUF3383 family protein	D6PSY3	Lactobacillus_phage	1.2e-131	88.0
WP_139560046.1\|830906_831305_+	hypothetical protein	D6PSY4	Lactobacillus_phage	1.3e-70	97.7
WP_139560047.1\|831375_831750_+	hypothetical protein	D6PSY5	Lactobacillus_phage	5.9e-65	95.2
WP_139560048.1\|831945_837651_+\|tail	phage tail tape measure protein	D6PSY9	Lactobacillus_phage	1.2e-159	95.1
WP_015474091.1\|837650_838298_+	LysM peptidoglycan-binding domain-containing protein	D6PSZ4	Lactobacillus_phage	3.4e-108	92.1
WP_139560049.1\|838303_838702_+	hypothetical protein	D6PSZ5	Lactobacillus_phage	1.8e-67	99.2
WP_139560050.1\|838691_839933_+	hypothetical protein	D6PSZ6	Lactobacillus_phage	2.1e-183	82.6
WP_139560051.1\|839932_840277_+	hypothetical protein	D6PSZ7	Lactobacillus_phage	1.8e-55	95.6
WP_015474088.1\|840276_840675_+	DUF2634 domain-containing protein	D6PSZ8	Lactobacillus_phage	4.9e-49	78.6
WP_139560052.1\|840661_841840_+\|plate	baseplate J/gp47 family protein	D6PSZ9	Lactobacillus_phage	2.5e-181	81.6
WP_087612847.1\|841829_842489_+	hypothetical protein	D6PT00	Lactobacillus_phage	5.6e-74	83.6
WP_139560053.1\|842491_844147_+	hypothetical protein	NA	NA	NA	NA
WP_139560054.1\|844159_844567_+	hypothetical protein	NA	NA	NA	NA
WP_139560055.1\|844578_844746_+	XkdX family protein	NA	NA	NA	NA
WP_129033383.1\|844757_845147_+	hypothetical protein	A0A0P0IV33	Lactobacillus_phage	5.9e-23	43.4
WP_047020987.1\|845179_845383_+	hypothetical protein	NA	NA	NA	NA
WP_139560056.1\|845394_845928_+	hypothetical protein	D6PSS1	Lactobacillus_phage	1.7e-57	69.1

DBSCAN-SWA_4

1261739 : 1272417

Staphylococcus_phage(37.5%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015473763.1\|1261739_1262591_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	1.7e-14	33.6
WP_087609482.1\|1262759_1263401_+	hemolysin III family protein	NA	NA	NA	NA
WP_139560072.1\|1263678_1264950_+\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	2.5e-46	31.9
WP_024855005.1\|1265002_1265494_-	dihydrofolate reductase	A0A0N9S8H6	Staphylococcus_phage	1.5e-23	37.8
WP_015473768.1\|1265510_1266461_-	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	2.0e-117	62.1
WP_139560073.1\|1266472_1268365_-	ATP-binding cassette domain-containing protein	A0A2K9L0W2	Tupanvirus	4.0e-48	29.2
WP_024855004.1\|1268393_1269587_-\|tRNA	CCA tRNA nucleotidyltransferase	G3MAR3	Bacillus_virus	1.9e-35	40.2
WP_011667555.1\|1269720_1270659_+	YitT family protein	M1Q1P6	Streptococcus_phage	2.2e-52	38.8
WP_087609486.1\|1270776_1272036_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_011667553.1\|1272141_1272417_-	HU family DNA-binding protein	A0A0H3UZA0	Geobacillus_virus	3.1e-26	68.5

DBSCAN-SWA_5

1354880 : 1439668

Lactobacillus_phage(52.63%)

capsid,tRNA,tail,terminase,head,integrase,portal,protease

attL 1367260:1367279|attR 1447130:1447149

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011668008.1\|1354880_1355792_-\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_011668009.1\|1355872_1356223_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_015473817.1\|1356242_1358585_-	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	5.1e-21	24.4
WP_011668011.1\|1358632_1358935_-	hypothetical protein	NA	NA	NA	NA
WP_011668012.1\|1358927_1359224_-	YlxR family protein	NA	NA	NA	NA
WP_011668013.1\|1359250_1360456_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_011668014.1\|1360479_1360953_-	ribosome maturation factor RimP	NA	NA	NA	NA
WP_011668015.1\|1361079_1361355_-	hypothetical protein	NA	NA	NA	NA
WP_011668016.1\|1361503_1365841_-	PolC-type DNA polymerase III	A0A0K2SUJ2	Clostridium_phage	1.0e-19	37.6
WP_011668017.1\|1365932_1367642_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
1367260:1367279	attL	NA	NA	NA	NA
WP_015473823.1\|1367677_1368955_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_011668019.1\|1369050_1369842_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_041815361.1\|1369863_1370652_-	isoprenyl transferase	R9W0U9	Flavobacterium_phage	4.5e-22	41.0
WP_011668021.1\|1370754_1371177_-	hypothetical protein	NA	NA	NA	NA
WP_015473826.1\|1371203_1371761_-	ribosome recycling factor	NA	NA	NA	NA
WP_011668022.1\|1371763_1372486_-	UMP kinase	NA	NA	NA	NA
WP_011668023.1\|1372632_1373517_-	elongation factor Ts	NA	NA	NA	NA
WP_011668024.1\|1373666_1374470_-	30S ribosomal protein S2	NA	NA	NA	NA
WP_011668025.1\|1374707_1375427_+	HAD family hydrolase	NA	NA	NA	NA
WP_011668026.1\|1375548_1376547_-	D-2-hydroxyacid dehydrogenase	A0A1J0F959	Only_Syngen_Nebraska_virus	3.7e-45	35.5
WP_024855602.1\|1376630_1376900_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_082265294.1\|1376886_1377633_-\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_011668029.1\|1377728_1378370_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_011668030.1\|1378430_1380224_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	7.3e-44	26.2
WP_024855600.1\|1380213_1381974_-	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	3.7e-48	28.2
WP_011668031.1\|1382104_1382329_-	YneF family protein	NA	NA	NA	NA
WP_096110514.1\|1382428_1382662_-	DUF896 domain-containing protein	NA	NA	NA	NA
WP_024855599.1\|1382859_1383489_+	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	1.6e-14	50.7
WP_011668033.1\|1383528_1383969_-	nucleoside 2-deoxyribosyltransferase	A0A1D3SPR3	Enterococcus_phage	1.3e-18	37.2
WP_107696479.1\|1384186_1384786_+	hypothetical protein	NA	NA	NA	NA
WP_011668035.1\|1384821_1385991_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA
WP_139560077.1\|1386136_1387018_-	polyphosphate kinase 2 family protein	NA	NA	NA	NA
WP_011668037.1\|1387178_1387841_+	histidine phosphatase family protein	A0A1X9IGJ2	Lactococcus_phage	5.5e-05	29.7
WP_011668038.1\|1387853_1388036_+	PspC domain-containing protein	NA	NA	NA	NA
WP_011668039.1\|1388178_1388643_+	nucleoside-diphosphate kinase	L7Y4C4	Megavirus	3.5e-22	46.3
WP_011668040.1\|1388723_1388930_+	hypothetical protein	NA	NA	NA	NA
WP_011668041.1\|1389125_1389563_-	hypothetical protein	NA	NA	NA	NA
WP_139560078.1\|1390566_1390767_+	XRE family transcriptional regulator	A0A1W6JPV9	Staphylococcus_phage	3.7e-05	41.5
WP_139560079.1\|1390813_1391059_-	hypothetical protein	NA	NA	NA	NA
WP_139560080.1\|1391058_1391877_-	autolysin	L0P6H6	Lactobacillus_phage	2.6e-12	30.2
WP_139560081.1\|1391869_1392298_-	hypothetical protein	NA	NA	NA	NA
WP_139560082.1\|1392560_1392920_-	hypothetical protein	NA	NA	NA	NA
WP_139560083.1\|1392933_1394547_-	hypothetical protein	NA	NA	NA	NA
WP_139560084.1\|1395364_1395604_-	hypothetical protein	NA	NA	NA	NA
WP_139560085.1\|1395600_1396620_-\|tail	tail fiber domain-containing protein	NA	NA	NA	NA
WP_139560086.1\|1396616_1399211_-	hypothetical protein	A0A2P0ZLF8	Lactobacillus_phage	1.0e-86	30.7
WP_139560198.1\|1399227_1399965_-	hypothetical protein	NA	NA	NA	NA
WP_139560087.1\|1401202_1406197_-\|tail	phage tail tape measure protein	Q9AZS0	Lactococcus_phage	3.8e-106	36.1
WP_024525141.1\|1406212_1406425_-	hypothetical protein	NA	NA	NA	NA
WP_139560088.1\|1406424_1406793_-	molecular chaperone	NA	NA	NA	NA
WP_139560089.1\|1406878_1407526_-\|tail	phage tail protein	A0A0M7RF39	Lactobacillus_phage	5.7e-47	48.4
WP_139560199.1\|1407529_1407916_-	DUF806 family protein	NA	NA	NA	NA
WP_139560090.1\|1407911_1408331_-	HK97 gp10 family phage protein	A0A2P0ZLE6	Lactobacillus_phage	5.2e-17	37.7
WP_060463294.1\|1408323_1408680_-\|head	phage head closure protein	E9LUQ5	Lactobacillus_phage	1.3e-29	52.1
WP_139560091.1\|1408663_1408990_-\|head,tail	phage gp6-like head-tail connector protein	E9LUQ4	Lactobacillus_phage	7.1e-22	57.4
WP_139560092.1\|1409047_1410271_-\|capsid	phage major capsid protein	E9LUQ3	Lactobacillus_phage	2.8e-196	87.1
WP_139560093.1\|1410270_1410975_-\|protease	Clp protease ClpP	E9LUQ2	Lactobacillus_phage	2.0e-77	66.1
WP_139560094.1\|1410967_1412152_-\|portal	phage portal protein	E9LUQ1	Lactobacillus_phage	4.7e-164	72.4
WP_139560095.1\|1412154_1412349_-	DUF1056 family protein	NA	NA	NA	NA
WP_139560096.1\|1412338_1414237_-\|terminase	terminase large subunit	E9LUP9	Lactobacillus_phage	1.4e-298	77.8
WP_139560097.1\|1414236_1414707_-\|terminase	phage terminase small subunit P27 family	E9LUP8	Lactobacillus_phage	2.5e-52	64.1
WP_139560098.1\|1414875_1415178_-	hypothetical protein	NA	NA	NA	NA
WP_139560099.1\|1415183_1415654_-	HNH endonuclease	E9LUP7	Lactobacillus_phage	9.1e-71	80.8
WP_139560100.1\|1415720_1416269_-	hypothetical protein	NA	NA	NA	NA
WP_139560101.1\|1417069_1417516_-	sigma-70 family RNA polymerase sigma factor	A0A0P0IZR0	Lactobacillus_phage	1.2e-27	42.4
WP_139560102.1\|1417759_1418239_-	class I SAM-dependent methyltransferase	A0A2H4PBJ4	Lactobacillus_phage	4.2e-63	69.2
WP_139560103.1\|1418242_1418494_-	hypothetical protein	NA	NA	NA	NA
WP_139560104.1\|1418494_1418752_-	hypothetical protein	NA	NA	NA	NA
WP_011667879.1\|1418763_1418961_-	hypothetical protein	NA	NA	NA	NA
WP_139560105.1\|1418974_1419436_-	DUF1064 domain-containing protein	A0A2P0ZKV6	Lactobacillus_phage	1.1e-25	46.2
WP_139560106.1\|1419432_1419813_-	hypothetical protein	NA	NA	NA	NA
WP_139560107.1\|1419823_1420066_-	DUF3310 domain-containing protein	E5DV94	Deep-sea_thermophilic_phage	3.5e-10	46.0
WP_139560108.1\|1420055_1420481_-	hypothetical protein	NA	NA	NA	NA
WP_139560109.1\|1420473_1421739_-	DNA helicase	U5U3Y9	Lactobacillus_phage	6.3e-58	38.4
WP_139560110.1\|1421710_1422538_-	hypothetical protein	A0A0B5D175	Listeria_phage	2.1e-33	53.9
WP_139560111.1\|1422556_1423114_-	DUF669 domain-containing protein	NA	NA	NA	NA
WP_139560112.1\|1423120_1424098_-	AAA family ATPase	A0A0S2SY47	Bacillus_phage	7.5e-59	38.3
WP_139560113.1\|1424099_1424993_-	DUF1351 domain-containing protein	A0A0P0IV40	Lactobacillus_phage	9.0e-27	33.5
WP_139560114.1\|1424985_1425165_-	hypothetical protein	NA	NA	NA	NA
WP_060463316.1\|1425436_1425763_-	DUF771 domain-containing protein	Q4ZD49	Staphylococcus_phage	9.3e-06	31.8
WP_139560115.1\|1425851_1426112_-	hypothetical protein	NA	NA	NA	NA
WP_139560116.1\|1426180_1426624_+	hypothetical protein	NA	NA	NA	NA
WP_139560117.1\|1426589_1426793_-	hypothetical protein	NA	NA	NA	NA
WP_139560118.1\|1426808_1427006_-	hypothetical protein	NA	NA	NA	NA
WP_139560119.1\|1427018_1427804_-	ORF6N domain-containing protein	A0A1B0YEA7	Lactobacillus_phage	1.8e-79	57.1
WP_139560120.1\|1427806_1428034_-	hypothetical protein	NA	NA	NA	NA
WP_139560121.1\|1429240_1429720_+	hypothetical protein	NA	NA	NA	NA
WP_139560122.1\|1429845_1430346_+	hypothetical protein	NA	NA	NA	NA
WP_139560123.1\|1430580_1431420_+	hypothetical protein	A0A1S5SA20	Streptococcus_phage	2.7e-09	24.6
WP_139560124.1\|1431726_1432857_+\|integrase	tyrosine-type recombinase/integrase	A0A0M9JJ77	Lactobacillus_phage	2.5e-106	53.2
WP_139560078.1\|1433614_1433815_+	XRE family transcriptional regulator	A0A1W6JPV9	Staphylococcus_phage	3.7e-05	41.5
WP_139560079.1\|1433861_1434107_-	hypothetical protein	NA	NA	NA	NA
WP_139560080.1\|1434106_1434925_-	autolysin	L0P6H6	Lactobacillus_phage	2.6e-12	30.2
WP_139560081.1\|1434917_1435346_-	hypothetical protein	NA	NA	NA	NA
WP_139560082.1\|1435608_1435968_-	hypothetical protein	NA	NA	NA	NA
WP_139560083.1\|1435981_1437595_-	hypothetical protein	NA	NA	NA	NA
WP_139560084.1\|1438412_1438652_-	hypothetical protein	NA	NA	NA	NA
WP_139560085.1\|1438648_1439668_-\|tail	tail fiber domain-containing protein	NA	NA	NA	NA
1447130:1447149	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1444242 : 1457321

Lactobacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_139560125.1\|1444242_1445544_-	peptidoglycan DD-metalloendopeptidase family protein	A0A2I6PEB6	Staphylococcus_phage	2.6e-43	32.1
WP_139560126.1\|1446512_1446809_-	hypothetical protein	A0A0P0IXJ2	Lactobacillus_phage	1.7e-22	59.4
WP_139560127.1\|1446957_1447638_-	hypothetical protein	U5U3Y9	Lactobacillus_phage	4.5e-18	34.0
WP_139560110.1\|1447609_1448437_-	hypothetical protein	A0A0B5D175	Listeria_phage	2.1e-33	53.9
WP_139560128.1\|1448455_1449064_-	DUF669 domain-containing protein	NA	NA	NA	NA
WP_139560112.1\|1449020_1449998_-	AAA family ATPase	A0A0S2SY47	Bacillus_phage	7.5e-59	38.3
WP_139560113.1\|1449999_1450893_-	DUF1351 domain-containing protein	A0A0P0IV40	Lactobacillus_phage	9.0e-27	33.5
WP_139560114.1\|1450885_1451065_-	hypothetical protein	NA	NA	NA	NA
WP_060463316.1\|1451336_1451663_-	DUF771 domain-containing protein	Q4ZD49	Staphylococcus_phage	9.3e-06	31.8
WP_139560115.1\|1451751_1452012_-	hypothetical protein	NA	NA	NA	NA
WP_139560116.1\|1452080_1452524_+	hypothetical protein	NA	NA	NA	NA
WP_139560117.1\|1452489_1452693_-	hypothetical protein	NA	NA	NA	NA
WP_139560118.1\|1452708_1452906_-	hypothetical protein	NA	NA	NA	NA
WP_139560119.1\|1452918_1453704_-	ORF6N domain-containing protein	A0A1B0YEA7	Lactobacillus_phage	1.8e-79	57.1
WP_139560120.1\|1453706_1453934_-	hypothetical protein	NA	NA	NA	NA
WP_139560129.1\|1454733_1455138_+	helix-turn-helix domain-containing protein	Q9T1J3	Lactobacillus_phage	5.3e-11	38.1
WP_139560121.1\|1455141_1455621_+	hypothetical protein	NA	NA	NA	NA
WP_139560122.1\|1455746_1456247_+	hypothetical protein	NA	NA	NA	NA
WP_139560123.1\|1456481_1457321_+	hypothetical protein	A0A1S5SA20	Streptococcus_phage	2.7e-09	24.6

DBSCAN-SWA_7

1568812 : 1639787

Staphylococcus_phage(16.67%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015473913.1\|1568812_1569460_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_011668204.1\|1569525_1570317_-	phosphotransferase family protein	NA	NA	NA	NA
WP_011668205.1\|1570378_1571605_-	ABC transporter permease	NA	NA	NA	NA
WP_011668206.1\|1571601_1572336_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.5e-23	28.3
WP_024855560.1\|1572554_1573004_+	HIT family protein	NA	NA	NA	NA
WP_015473917.1\|1573006_1573327_+	hypothetical protein	NA	NA	NA	NA
WP_011668209.1\|1573439_1574357_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_015473919.1\|1574420_1575395_-	HD domain-containing protein	NA	NA	NA	NA
WP_082265308.1\|1575407_1578032_-	AAA family ATPase	NA	NA	NA	NA
WP_082265492.1\|1578021_1579236_-	DNA repair exonuclease	NA	NA	NA	NA
WP_015473922.1\|1579318_1579663_-	hypothetical protein	NA	NA	NA	NA
WP_011668214.1\|1579753_1581850_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA
WP_011668215.1\|1582015_1582483_-	arginine repressor	NA	NA	NA	NA
WP_011668216.1\|1582717_1584409_-\|tRNA	arginine--tRNA ligase	A0A2I2L3K1	Orpheovirus	7.6e-75	32.0
WP_011668217.1\|1584880_1585102_-	DUF2187 domain-containing protein	NA	NA	NA	NA
WP_011668218.1\|1585435_1586695_+	N-acetylmuramoyl-L-alanine amidase	A0A2H4JAS1	uncultured_Caudovirales_phage	1.8e-17	40.0
WP_087609513.1\|1586755_1587289_+	dihydrofolate reductase	NA	NA	NA	NA
WP_011668220.1\|1587355_1587697_+	YisL family protein	NA	NA	NA	NA
WP_011668221.1\|1587910_1588624_-	amino acid racemase	NA	NA	NA	NA
WP_011668222.1\|1588630_1589887_-	carboxylate--amine ligase	NA	NA	NA	NA
WP_011668223.1\|1590021_1591905_-	asparagine synthase (glutamine-hydrolyzing)	NA	NA	NA	NA
WP_021742205.1\|1592048_1592777_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_011668225.1\|1592885_1594295_+	C69 family dipeptidase	NA	NA	NA	NA
WP_011668226.1\|1594364_1594601_+	hypothetical protein	NA	NA	NA	NA
WP_087609514.1\|1594748_1596551_-	cell surface protein	NA	NA	NA	NA
WP_011668228.1\|1597102_1597354_-	hypothetical protein	NA	NA	NA	NA
WP_139560134.1\|1598089_1600600_-	ATP-binding cassette domain-containing protein	A0A1B1IVR3	uncultured_Mediterranean_phage	2.5e-138	32.3
WP_087609515.1\|1601693_1602224_-\|transposase	transposase	NA	NA	NA	NA
WP_024748245.1\|1602309_1603233_+\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	3.7e-31	30.7
WP_011668232.1\|1603563_1603857_-	heavy metal-binding domain-containing protein	NA	NA	NA	NA
WP_015473929.1\|1603847_1604366_-	VanZ family protein	NA	NA	NA	NA
WP_011668234.1\|1604921_1605398_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_107696657.1\|1605449_1606073_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_011668236.1\|1606438_1606684_-	hypothetical protein	NA	NA	NA	NA
WP_011668237.1\|1606833_1607796_+	NAD(P)-binding domain-containing protein	A0A1B1IVB5	uncultured_Mediterranean_phage	8.2e-26	29.0
WP_011668238.1\|1608015_1610730_+	glycoside hydrolase family 65 protein	NA	NA	NA	NA
WP_011668239.1\|1610742_1611414_+	beta-phosphoglucomutase	NA	NA	NA	NA
WP_011668240.1\|1611468_1612239_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_011668241.1\|1612392_1613040_+	deoxynucleoside kinase	C1KFI3	Lactobacillus_virus	9.1e-45	45.9
WP_011668242.1\|1613087_1613414_-	DUF960 domain-containing protein	NA	NA	NA	NA
WP_011668243.1\|1613487_1614963_-	MFS transporter	NA	NA	NA	NA
WP_015473935.1\|1615168_1616356_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	9.5e-149	69.4
WP_011668245.1\|1616599_1617307_+	hypothetical protein	NA	NA	NA	NA
WP_011668247.1\|1617803_1618373_-	hypothetical protein	NA	NA	NA	NA
WP_139560135.1\|1618579_1618903_+	heavy metal-binding domain-containing protein	M4STD1	Rhodobacter_phage	1.1e-06	36.5
WP_011668249.1\|1619274_1619844_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_011668250.1\|1620081_1620549_+	universal stress protein	NA	NA	NA	NA
WP_011668251.1\|1627609_1629667_-	LTA synthase family protein	W6LM83	Streptococcus_phage	1.2e-151	47.0
WP_011668252.1\|1629803_1630040_-	YkuJ family protein	NA	NA	NA	NA
WP_011668253.1\|1630117_1631152_-	flippase-like domain-containing protein	NA	NA	NA	NA
WP_011668254.1\|1631156_1632179_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_011668255.1\|1632191_1633370_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_011668256.1\|1633554_1635291_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA
WP_011668257.1\|1635290_1635557_-	phosphocarrier protein HPr	NA	NA	NA	NA
WP_011668258.1\|1635724_1635925_-	hypothetical protein	NA	NA	NA	NA
WP_011668259.1\|1636224_1638462_+\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A223W0B1	Agrobacterium_phage	5.6e-126	40.8
WP_139560136.1\|1638515_1639787_-\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	5.0e-47	32.1

DBSCAN-SWA_8

1708136 : 1718194

Streptococcus_phage(71.43%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_139560141.1\|1708136_1709408_+\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	4.3e-46	31.6
WP_087609528.1\|1709781_1711050_-	LlaJI family restriction endonuclease	NA	NA	NA	NA
WP_139560200.1\|1711027_1712116_-	AAA domain-containing protein	M1NSM1	Streptococcus_phage	5.3e-45	32.0
WP_139560142.1\|1712403_1712979_-	hypothetical protein	M1NSM1	Streptococcus_phage	5.4e-17	31.2
WP_087609530.1\|1712984_1714037_-	DNA cytosine methyltransferase	M1PSQ0	Streptococcus_phage	1.7e-117	59.3
WP_087609691.1\|1714046_1714742_-	site-specific DNA-methyltransferase	M1Q227	Streptococcus_phage	1.4e-80	61.4
WP_087609533.1\|1715729_1717103_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	4.1e-127	50.8
WP_011668329.1\|1717174_1718194_-	diacylglycerol kinase	A0A1V0SBJ0	Catovirus	4.8e-16	27.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP031185

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection