CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP039852	Salinimonas sp. KX18D6 chromosome, complete genome	1 crisprs	cas3,DEDDh,DinG,csa3,Cas9_archaeal	0	0	2	0
NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	2 crisprs	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	0	24	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP039852_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP039852_1

1098897-1099023

Orphan

Consensus_repeat	Method
GTGTTCACAAACTTATTT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP039852_1

>merge|NZ_CP039852|1|1098897-1099023|PILER-CR
TGTTCACAAACTAATTTGTGTGAGCTTTATAAGGCTCTTTGTCTAATTTTTGGTGTTCACAAACTTATTTCATTTGTTACTGCCCTCTAGCCTTAATTCTATAAGGGGTGTGTTCACAGACTTATTT

>NZ_CP039852|1|1|1098897-1099023|PILER-CR
TGTTCACAAACTAATTTG	TGTGAGCTTTATAAGGCTCTTTGTCTAATTTTTGG
TGTTCACAAACTTATTTC	ATTTGTTACTGCCCTCTAGCCTTAATTCTATAAGGGGTG
TGTTCACAGACTTATTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP039852.1\|WP_139755574.1\|1090982_1091414_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP039852.1\|WP_168190604.1\|1096257_1097208_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377670
NZ_CP039852.1\|WP_139755573.1\|1089832_1090006_-\|DUF2384-domain-containing-protein	unknown	unknown	gnl\|CDD\|378249
NZ_CP039852.1\|WP_139755588.1\|1106459_1107431_-\|pilus-assembly-protein-TadB	unknown	unknown	gnl\|CDD\|227300
NZ_CP039852.1\|WP_139755577.1\|1094878_1096261_+\|AAA-family-ATPase	unknown	unknown	unknown
NZ_CP039852.1\|WP_139755584.1\|1102769_1103327_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039852.1\|WP_168190603.1\|1087385_1087553_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039852.1\|WP_139755589.1\|1107439_1108759_-\|Flp-pilus-assembly-complex-ATPase-component-TadA	unknown	unknown	gnl\|CDD\|227297
NZ_CP039852.1\|WP_139755580.1\|1099298_1099895_-\|DUF5610-domain-containg-protein	unknown	unknown	gnl\|CDD\|375859
NZ_CP039852.1\|WP_139755587.1\|1105482_1106457_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224975
NZ_CP039852.1\|WP_139755575.1\|1091720_1092545_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378037
NZ_CP039852.1\|WP_139755586.1\|1104524_1105469_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP039852.1\|WP_168190605.1\|1097200_1098658_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379756
NZ_CP039852.1\|WP_139755585.1\|1103497_1104484_+\|Solitary-outer-membrane-autotransporter-beta-barrel-domain	unknown	unknown	gnl\|CDD\|371601
NZ_CP039852.1\|WP_139755582.1\|1101376_1101934_+\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|379226
NZ_CP039852.1\|WP_139755583.1\|1102177_1102684_+\|DNA-starvation/stationary-phase-protection-protein-Dps	unknown	unknown	gnl\|CDD\|153102
NZ_CP039852.1\|WP_139755571.1\|1081522_1086370_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|372468
NZ_CP039852.1\|WP_139755572.1\|1087966_1089778_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP039852.1\|WP_139755576.1\|1092554_1094879_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039852.1\|WP_139755581.1\|1100489_1101065_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP039852.1\|WP_139755574.1\|1090982_1091414_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.39905e-09
NZ_CP039852.1\|WP_168190604.1\|1096257_1097208_+\|hypothetical-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	9.18904e-06
NZ_CP039852.1\|WP_139755573.1\|1089832_1090006_-\|DUF2384-domain-containing-protein	gnl\|CDD\|378249	pfam09722, DUF2384, Protein of unknown function (DUF2384). Proteins in this family are found almost exclusively in the Proteobacteria, but also in Gloeobacter violaceus PCC 7421, a cyanobacterium. The function is unknown.	1.12022e-05
NZ_CP039852.1\|WP_139755588.1\|1106459_1107431_-\|pilus-assembly-protein-TadB	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	4.8029e-44
NZ_CP039852.1\|WP_139755589.1\|1107439_1108759_-\|Flp-pilus-assembly-complex-ATPase-component-TadA	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	3.2725e-154
NZ_CP039852.1\|WP_139755580.1\|1099298_1099895_-\|DUF5610-domain-containg-protein	gnl\|CDD\|375859	pfam18433, DUF5610, Domain of unknown function (DUF5610). This is a domain of unknown function found in bacterial proteins.	0.000115064
NZ_CP039852.1\|WP_139755575.1\|1091720_1092545_+\|hypothetical-protein	gnl\|CDD\|378037	pfam08722, Tn7_Tnp_TnsA_N, TnsA endonuclease N terminal. The Tn7 transposase is composed of proteins TnsA and TnsB. DNA breakage at the 5' end of the transposon is carried out by TnsA, and breakage and joining at the 3' end is carried out by TnsB. The N terminal domain of TnsA is catalytic.	7.37363e-06
NZ_CP039852.1\|WP_139755586.1\|1104524_1105469_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.40272e-16
NZ_CP039852.1\|WP_168190605.1\|1097200_1098658_+\|hypothetical-protein	gnl\|CDD\|379756	pfam15978, TnsD, Tn7-like transposition protein D. TnsD is a family of putative Tn7-like transposition proteins type D.	4.58815e-14
NZ_CP039852.1\|WP_139755585.1\|1103497_1104484_+\|Solitary-outer-membrane-autotransporter-beta-barrel-domain	gnl\|CDD\|371601	pfam11557, Omp_AT, Solitary outer membrane autotransporter beta-barrel domain. Omp_AT is a family of Gram-negative Gamma-proteobacteria outer membrane autotransporter beta-barrel proteins. Secondary structure prediction indicates a beta-barrel domain of 12 beta-strands. with an N terminal helix running along the central barrel axis perpendicular to the 12 antiparallel strands that form the barrel. Autotransporter translocation units defined by a beta-barrel of 12 to 14 antiparallel strands with an N terminal helix perpendicular to the barrel.	8.32997e-55
NZ_CP039852.1\|WP_139755582.1\|1101376_1101934_+\|outer-membrane-beta-barrel-protein	gnl\|CDD\|379226	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	7.12723e-16
NZ_CP039852.1\|WP_139755583.1\|1102177_1102684_+\|DNA-starvation/stationary-phase-protection-protein-Dps	gnl\|CDD\|153102	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) display an N-terminal extension of variable length that contains two or three positively charged lysine residues that extends into the solvent and is thought to play an important role in the stabilization of the complex with DNA. DPS Listeria Flp, Bacillus anthracis Dlp-1 and Dlp-2, and Helicobacter pylori HP-NAP which lack the N-terminal extension, do not bind DNA. DPS proteins from Helicobacter pylori, Treponema pallidum, and Borrelia burgdorferi are highly immunogenic.	3.4924e-45
NZ_CP039852.1\|WP_139755571.1\|1081522_1086370_-\|AAA-family-ATPase	gnl\|CDD\|372468	pfam13087, AAA_12, AAA domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins.	4.07522e-48
NZ_CP039852.1\|WP_139755572.1\|1087966_1089778_+\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	3.1008e-48
NZ_CP039852.1\|WP_139755587.1\|1105482_1106457_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224975	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion].	3.37544e-24

>NZ_CP039852.1|WP_168190605.1|1097200_1098658_+|hypothetical-protein
MRSVQLGRFFPRPFADEALFSVIQRVVLTHGGGKDKRIVSALFGSRSLQFCSQFPSVIPHLKGQSNIPCDSWITEHTVLPIYRPFTPQKRYESAVDALKVGKGNHVFKALGITASREKLTPEAKYCSQCAQDDEKSAGLAYWHVGHQLPGLTHCVFHNERLSVMCLSRKKFDVWPIVSDSKSIKAPEGSEAERHLSLLINESFILGKTVGLIPDLYERYFSRLIARGFTTSCGHLRLQQLRTEMSAFWQGLSYHPCFKDALSTQHSLPFPSNLFAYQDACHSPIKHLLLIGFLFGDIATLMSFTNTSERVKKCPPLTKVRKPEADIEATIVDALTSGLSLRKVSEKFRVSIGFVKKVAVIHKIELDLRPQKIFRPEQDEIIDKLALGYPTQDIAKQCHCSTGAIETILSQHPDIVELRADTRKLRKRERMRLSLLNTINELQCPRRNDIKLKNGTAYMWLYKHDKVWLYDHLPAQIPRCYRRSKT
>NZ_CP039852.1|WP_168190604.1|1096257_1097208_+|hypothetical-protein
MTSSKPRFFPVLLDGEFLYGTITRWAVTQSAVPKMQSIDSRKVKTKNATVDISGKWIEVVSTMTSVDFTQYGSVLEKATQLPLYNTFFNERRPLTYALPGEYAVATETAHSFLRYCPVCLKESVSTSGLGFWKTLHQSPLLLRCRFHNTRLIAYQKATAELRRPYLLEINGITDLWHEETCSIDALTDFQQWLETLALNKKLYQCRGLAKSIIQHLTTLLGTPDDIRQARKRNTKQVDFDTSAFAYKVRQAGYEAFLKRGTRSINEIKRDPKFSLTQILSHRKRYSPVFYLLLVWVFLGPDFIESQTIEHNESKCA
>NZ_CP039852.1|WP_139755577.1|1094878_1096261_+|AAA-family-ATPase
MSFAEPYEWYPAEYRTHFDIQCQGNPLIEALYPQYSEAEFLGFITNTPELPYNFFNLPFEHAQRYIKRLEKAYIPSPLDYEIYRHIHSEMVNGYVHRNPITPMQQAKMLGVARGQFVPNPHNNKQTASGSCTLLSGISGIGKTERVQLILKMFQPVIRHELYQGHPLIIDQVPTVSFEISNLKSVKALGVNFFKATDKLVGTNYTQQWYKGKQATYAFLIEMQLLAERFGIGITHIDECQKLLAEAKKDDSPTIQYLESLFNNVGVPIIMTSTEEGVELFDSKSNSDDESLRKFTTTRRLTSGRDIRCEKLSFFDDEFQQFIDCFLPPYLFNGTPARYEEFKAQLYEHSQGVHQVLNKLLRLFLDNLHRKRPEPSQYSDVLKAVFDNQFVKLKPALQALKNKSAQTYELEMEKLRDYKDDELSQMQDDKFESAGEPLEPRTLHTSVKGPRVCSERELRKL
>NZ_CP039852.1|WP_139755576.1|1092554_1094879_+|hypothetical-protein
MPARLTLVKFKDTFDIPTGFGKKDDVFGICYVDSQTLSVGVANYTQYLGYSHDTETFELKNRQAQPSKPRLFSRTEFAEAFDIIKKDDDALTIIMPQFLGLSDEELLTIRTKEWLSRRDKAFEVIRPLLPQEHYELSYFVMRYLRGEAHQEIKQYCLEGGYGSTTTITRKINLYIVFGFTANALLPFGFEFCGTEKRAIDGNSETKTNKNTKRRKRGRPGTYSNNRGANESDKRIIKDLIRDNKVSLRGGKLDISRLYDEYVVRYEDKFDLPHATINKQRNYEFPYSESEIISQDTFRYHFKKLLPLEKFIKFRDGQHKFDKDHRPKRGDAKDGVVGAGHVVEFDHTQLDLHARMPGVHDKRFSAGRPWLVIAKDVYTKFILGFHISFRPPCWDNIAECIINCVENKVEFAARYGVELAERDWPSRHLHMLYKIDNGVEYPHEQESEIMASPFKFQGSQQVAKGRGDLKADSESTLGKLNRIVSNNPGGIDTGKDAMEQDASQQALLTIEDITAQLIDEIVLMNKTADRECSLDQDMLSAGVEPTPLAQWNYSIEHQMSGGNPVSKAQIPELQYTLLPKQMARIDADGITLKKYPQLQYDGEFKELENWYLQKKHKAAGATTEIKVAIASGSIKRVYYRDNNTIYPLDLKTQNSQFEDMSFFEFEQSVKARKQIQRDRKNSQQAGRVYNKRRQKERIEANQAALAGVPTNSQRSYQKEIKNHNGIMRGEQACRDAHRINDYMSPNFPEQSANPLEPTACDSTAPTKPKSSREFF
>NZ_CP039852.1|WP_139755575.1|1091720_1092545_+|hypothetical-protein
MQDKLKQRKMRPEARKRILLSRSEWKRYRKWRKDIELGPYRPFFETHQLHSTGRKHKFFCPKQQRIVHLMSDAEYKVYKDMIWRPDVVSIDEQYALDIKETWKICQELKIHHPYEYQRDIHHIMSTDLVVTLNRGGALVKRAHPVKFEIYSHAKSRTNNKLKVEMAFWEARNIPCDPISAVSVDKNWIKHLDFLSMHYDPSLSSNELTQFSGLFAKCWAKAPKLPLRAILTQIAQLIGVHQFTAEKVFKNATLAGLIPLKAPVPLMYHKPVLLA
>NZ_CP039852.1|WP_139755574.1|1090982_1091414_-|helix-turn-helix-domain-containing-protein
MSLAKSKNLYHESRNKMLGDFLRKHRERLKATTTGLASSPKNGSPLKKFTQTEVACYLGVKRSYINKIENGRYRPARDFLEQLCQLYNIDVERTLFIAGYADIDMLQKVAKSDTFWKVVSGLSLRRLSNKELLQIIELFEIDD
>NZ_CP039852.1|WP_139755573.1|1089832_1090006_-|DUF2384-domain-containing-protein
MKLITKDYLLSQLAEFFEGDRSMMDEWLHTPLPVLGGERPTDFMDTKETSKTTGGNW
>NZ_CP039852.1|WP_139755572.1|1087966_1089778_+|diguanylate-cyclase
MKRISFFFLILIPFCLLASTSAGQPIADYKRTYIDLKKRYPDPQLRVEAAAEEKAFDKSDLGRVFTFIANSEVHSITSSLTFPKIHDDTWTSIRNEDENLYYGIQGLSIIYSEAPLRDRLEKLIVFREGIPRHIQSDIVYALTAKIISSLFYLNEISPALIELMLVMDSLSDEDPNKIFQYSKADSFNTAFDIYFELSDFKAARKYCNRYVENTSFLTHSQYVRCNALLSNHENSEDYLEQAFENTTSPLAKAKILGSKVWRDLHHNNVDNETLKNIDLVIATWESQTVKNREQLVSSYIKKTYVLSILSEFTDAHKAIEKAHGYNTPSIGYERLINMAEIVLLKAEGKLDDALALSRETLFDFFYSEPVMSAGERTVLSATLDKVLNFSDYESMQRKNREQLLLIKNQNLTRTLLVISLFLSLAVLLLTYQGYRSFKRRAQYDGLTGIYNRSTGIERLNSVYTNARRGTDSLVLALVDLDDFKKINDKFGHSAGDEVLKVFAKIAQDSIRTSDILMRYGGEEFLFVFAGITPKMVSEKLEDIRESLKEHKDWKSVETEFSVSFSAGISSAPNTGEIQEAINRADESLYRAKAQGKGKSCIAG
>NZ_CP039852.1|WP_168190603.1|1087385_1087553_+|hypothetical-protein
MSVSTLIAAELYEAIWSTPLSHLATRWRLNDHALGHLIDSVGMPRPKSAYWAQKA
>NZ_CP039852.1|WP_139755571.1|1081522_1086370_-|AAA-family-ATPase
MDIKCLDPQGINGFELKANEVLSKHLPDSWIGYSSLEMLGRQGKDFEADLILVTHDRIIVIELKNYKGKLFSRGNRWIQEYDDGRQESRINAVSQASRAAKILKSRLQKKLANKYVPYVDKRVVLCGSADASHLSEEERECVFTLDEFKHIGDEKIYKKIIGRPFSFDRKEDIPNKNITVWNRIFLNNSADFKAKAFSSNGYVLNGTSLFQHKDNLYSEFRSQKAENANYQALMRRWDFTAPCIVEHTRTPEQRATIAQRESNVLGYIDTQDEDLKDSHLQLLHIPTDLTEDFVELYEWPNKKERLDTFIRKNKSKLTTQNRLDLIQVLISQLSRLHEIEVAHRDLGSHSIWLSLPSKVVLSNFLTAYYPDPDKKTVSSVRKIIQHGRVETPEELFEENSHATAFSRDVYLATAACHFIAFDTWPKKEDGIYVWNPVGGNEISEKLSGWFSRGLELDSRDRFQDLCDSQTELNKLIRTGAEDPAHTLSLLTKYYTNNNVYTELGAVPFKTDGTCHLLKAPDDSFGVKAWFGLSDTHGSGGINHELLMFFSRLESINNAALPQLPEILDFGFNPAMTCAYFKYEWVEGVTWAKAVESIEKPDGYRLAKELVLALLKLHGAKLYHGDLHPQNIIVDDGKIRFIDLVEYDLNNADKHTPAYVPSSFENLAKTTIDRFAVVKILNELSQAINSLHLSKYTEELLALPEVSTSELEKLLDNFDMIVNPPPPVTLRKYEIHLKNCRTVTELLTSDDGAYYMTLKQNAGKQGDLLSVQLSGIKKNISLLINEDRKFIVSFRENDIRHDQFIRNKRDSQLKLTGEIHLSNNIHGSTESFIDFILQSEAYKKLARTSGETNAEGKGSHRPTLTLPKMASSTVLDARDIWKVLVETEEESYPKIQVVTDPVYNANQLLSFRYSLDDSKFDFDLRTERVNVKMEVKGELRVIGIVEDLSSDTLILKTRGNTTPQAGDTIILEGSMTAASLSKREKAVTKLITGRGVIPDLPDYFSPGLNAQIIEGVTPTEDELNTYTEYKEDGSISFALNEQQRDAFKALYRYGPIALLQGPPGTGKTAFIGSYIHYSIMKGARRVLLVSQSHEAVNNASERVRSLFKRTEQAIDIVRLGDESNLSASLTDVGEKALQEHYRDKFRAEYRERLSTLLEHIGIPAEMSSTISDFEDSYGQRFNQLLSQAQDEEQADTAKLAQRQSKLKESLNGFVSRQYPNSPSFTGVSLSKIRSTLLEFLAEHFDIYSKELIFKVSNLIETSNEWLSVMASGKAQFQNFLAKTRTLVCGTCVGIGRNHYGVQENIYDLVVIDEAARSPASELAIAMQVGKKVLLVGDHKQLPPLFDEAHIKAAKRELPKLDEEELKRSDFERAFVSDYGKTVGRSLLTQYRMAPAIGRLVSDNFYDGALQTGRPQTRDQYQNLINSFANPVTWFDTSGEGNRNREETPKGKGVNKKSFINPHEADCIISIIKRLYDSDTNDEILTEDEDPKVGVICMYGEQVRHLIRKINSMPWARSLLERRIVKVDTVDSYQGKENDIVILSLVRSNGRGTQGYVSSENRANVSLSRAKEALFIVGNSQMWSQYNQSSAFGRVFKFIEDNNSPDYSIRPAKGVSQ
>NZ_CP039852.1|WP_139755580.1|1099298_1099895_-|DUF5610-domain-containg-protein
MNTVTASPNFGQQVHQLKASRAEEGATGPLGKEVSAMAHARNAERQAEKSASETVNTTDQVELDINDNTNTDTAVTAIVTHNINEALQSADEATDTSVSLRTATEGESLGDVLRTGFSSLLSGYQQQNPEKTADEALSSLTKLLQEGVDKGFTEAQDTLASGGTLDEETISQLTASKDEIHSLINHLATAVSTGGSSQ
>NZ_CP039852.1|WP_139755581.1|1100489_1101065_+|hypothetical-protein
MGGQTNVEVTAPLADLGITPGLLGGELVSGEPLTLGFNITGGDLDFTTLAGTIEHEGSSISLTGDMGNDDDNDDVTVVLSDFMINTGTAILSADVNGGGMVDLFSLDLTGLDAAAITNLSNPQISLTFLDAASDLLEDTFDIQGDTLMGAQFGLAATAPVPMSADVSEPALFGALAGGFFGLAMYRRRRQQ
>NZ_CP039852.1|WP_139755582.1|1101376_1101934_+|outer-membrane-beta-barrel-protein
MQRNTFAALVLAGCAFSSSVAVAADNIYLGGNISRQTIDVGGRDFNVFSVLAGYKFSDYWSLETRLGTGLSDYTESYEFGGSSYLNKEEIDWQASVNIRGAYPVTHNLSVFGVVGYSETEIDRVSREDDSVRFSGSFEDTTGVSYGAGLNYHISDNISATLEYQVLPELSGFDWDSLALGVQYHF
>NZ_CP039852.1|WP_139755583.1|1102177_1102684_+|DNA-starvation/stationary-phase-protection-protein-Dps
MSNTNGFTAPGMNEESATRTVKALSQRLTALLDLQLTLKHIHWNVVGPNFIGVHEMLDPQVDAVREMTDTIAERIATLGGVPKGTPKAIVDSRSWDDYEIGRALVNDHLVALDKVYTGVNGDHRDAIEVLGELDPVSEDMITGQLAALEQFQWFVRAHIESASGELKN
>NZ_CP039852.1|WP_139755584.1|1102769_1103327_-|hypothetical-protein
MPFVRTRFLILLLLSSASGAALSADNNNMETIEVTGKKPLQLYFNLRDEKRHKFMRYFNKIVQDDDLKFDCKRFAPTGTRIWREVCKSAFDWRIEKEIIDEEISRGNMFGAAQIAKMGNKEQRDRKKELTRTIKVMLATNKEFAEYWNSFKAADENFKNAHSKAFGSLSMYSEEDEDAQDKESAP
>NZ_CP039852.1|WP_139755585.1|1103497_1104484_+|Solitary-outer-membrane-autotransporter-beta-barrel-domain
MRLTNISLFLPLAIGSGAASADAFDELNQLAGKNVESAFATASLLSDNDVVKLGFFNFNPNDVIGTNNDALGSADATSLRSGIDQFNFPLNITSHRTADLKWRLGGRASYVNIEQELFLGDEVGDRGDELSDRVISLSLGGGVTYDINEHWQASADLNVAWMKYRSRIDYRTDVDQQIRDVFDGLLVNFDVEMLMLEPVASLKYSWQSFGADFSISGDFHYLHGFTLDNENPAHNVEPNEWYVIGSLNVSQPVTFFDVDGQSMKYRFSRVELSNLLAEQMGSGHYYEAEVGWVKQRDEDAYIKEYGVGVNFNYGSILKGGTLVLYYTF
>NZ_CP039852.1|WP_139755586.1|1104524_1105469_-|tetratricopeptide-repeat-protein
MKTLLAIFAALIVLSGCESTDKTAQQAEEANKVPVEQMITMAGHYEKGGEYEKALVYYLKALEESPEDIQLAYRVAELHKQMGKPEYALHMLQRVIASDPHHARALSEAAMIYLENKDVARATDYFLKVRALDQKRLRETTARKTGFVSLDNASPLDAYNGLGVAYDLTGRYKQAQEMYALCLDIAPYSPVILTNVGYSFYLAGQYSDAISHFQQAIEIAPSHKRSWSNLGLVYTRMGRYNKAFQTLKRVMNDAQAYNDLGYFLMLESRYEEAEYFFEKAINASPKYYKVAYENLSDVRHQRALAEGGDISMMP
>NZ_CP039852.1|WP_139755587.1|1105482_1106457_-|type-II-secretion-system-F-family-protein
MEYLRGLLYSFTSNENTVTMAVLGIALMAGLMLAAAMYYLISGAYSPIRRQVLRMRSATVNSPTEPNYKHYLESTLTKVGGSSIFEGALKKDQETRKLLIHAGFHSENALKIYYSLRLLSLLIGVALAMVIFRLFPDLSTMVSVYVILLIVGSFFILPGIALTKLAASRMRKLRRYFPDALDLLVVCCESGLGLLESFQRVSNELRAVHPYLAHELGLVVKKVKVGIPLSQSLEEFGHRTGLEDIRGLNSVIVQSIKLGTGVAETIRVYADEYRDKRLQAAEEMAAKIAVKMIFPMMVCIWPSFFIVAIGPAALKVMEVWDKAF
>NZ_CP039852.1|WP_139755588.1|1106459_1107431_-|pilus-assembly-protein-TadB
MMSIQIIFLGLVFLAVVLLSQMLFVSVNSPQRADSKELKRQLDILVEQDSYFPRQLLLNTRLNQLSAFRRSLENIPVVKSFTFKLELSGSKMLGHEFLFIAVIVSTVLAAILWVLSRDLLVSIVCFGATMAAFNFKLQRDINKRMDRIEEQFPEALDVLKRGLQAGYSFNEALKLVYEELAGDLSNELKLLFQRINLGADLKVAMLAFVRRVPSTSAMAFASAVNIQKETGGNLAENIENLSVLIRQRFRFRRKVRTLSAEGRLSGWILVLLPFALFALLYVTTPSYVSELFTTESGHELLKWGLIGMLAGTFWIKKLLELEA
>NZ_CP039852.1|WP_139755589.1|1107439_1108759_-|Flp-pilus-assembly-complex-ATPase-component-TadA
MDGESHFVDPYQQLTTEDVDTKQEIFNEVLNLLDPSMLETIEEDIARQQITECCRRLLENYSRPINMATRTIITRLVLDEILGLGPLEVLMADPTVSDILVNNYNNIYVERGGRLERAAVRFYDNRHLMSIIDRIVSRIGRRVDESSPMVDARLEDGSRVNAIIPPLALDGPSMSIRRFTVEKLNVEQLINYGSMTSDMDILIKGAVKGKLNVLISGGTGSGKTTLLNILSGYIPASERIITIEDSAELQLQQPHTVRLETRPPNIEGRGEVTQRDLVKNCLRMRPDRIVIGEVRGAEAIDMLAAMNTGHEGSLATLHANSPRDALGRLENMICMGGFDMPIRNIRAQIASAIDLVVQTQRLEDGSRRIISIQEVTGMEGETITMSELYKYERRGIGSNNEVMGTFKATGVVPLFHRQLVAKGIDMPHRIFGVDADIRL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1809411 : 1817810

uncultured_Caudovirales_phage(50.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_139756155.1\|1809411_1811988_+	DUF87 domain-containing protein	G1DAY1	Mycobacterium_virus	9.1e-88	50.5
WP_168190638.1\|1811998_1812634_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_139756157.1\|1812633_1813944_+	AAA family ATPase	G3MBE0	Bacillus_virus	5.5e-73	37.4
WP_139756158.1\|1813945_1814329_+	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	7.6e-07	37.0
WP_139756159.1\|1814339_1815635_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.0e-91	42.7
WP_139756160.1\|1815755_1816100_-	TusE/DsrC/DsvC family sulfur relay protein	NA	NA	NA	NA
WP_168190639.1\|1816103_1816310_-	hypothetical protein	NA	NA	NA	NA
WP_139756162.1\|1816357_1816729_-	sulfur reduction protein DsrE	NA	NA	NA	NA
WP_139756163.1\|1816704_1817094_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.3e-11	32.1
WP_139756164.1\|1817144_1817810_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.1e-37	47.7

DBSCAN-SWA_2

3560852 : 3569619

Morganella_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_139757603.1\|3560852_3562109_-	DUF4113 domain-containing protein	A0A1W6JNT0	Morganella_phage	2.6e-80	37.7
WP_139757604.1\|3562096_3562513_-	S24 family peptidase	A0A1L5C2A3	Pseudoalteromonas_phage	4.2e-19	47.3
WP_139757605.1\|3562603_3562897_+	hypothetical protein	NA	NA	NA	NA
WP_139757606.1\|3562975_3563689_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	2.1e-18	32.0
WP_139757607.1\|3563685_3564975_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_139757608.1\|3564971_3566555_-	PAS domain-containing protein	A0A1B0V854	Salmonella_phage	1.9e-40	54.0
WP_139757609.1\|3566857_3567952_-	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.6e-07	88.2
WP_139757610.1\|3568101_3569619_-	ATP-binding cassette domain-containing protein	A0A2H4UU96	Bodo_saltans_virus	5.3e-11	29.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP039853

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP039853_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP039853_1

297549-297713

TypeI-F

Consensus_repeat	Method
AAAAGTACGAATGGCGTCTT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP039853_1

>merge|NZ_CP039853|1|297549-297713|PILER-CR
AAGTACAAATGGCGTCTTGCACATGTGTTTTAAGTTCTGAAATAGCCGATTTCAAAACGCCATAGATACATCAAAAGTACGAATGGCGTCTTTCGATGCTAAATTAAGCGTCCCTTCCTTTCCTTAAAGACGCCAAACAGCATTTAAAAGTACGAATGGCGTCTC

>NZ_CP039853|1|1|297549-297713|PILER-CR
AAGTACAAATGGCGTCTTGC	ACATGTGTTTTAAGTTCTGAAATAGCCGATTTCAAAACGCCATAGATACATCAA
AAGTACGAATGGCGTCTTTC	GATGCTAAATTAAGCGTCCCTTCCTTTCCTTAAAGACGCCAAACAGCATTTAA
AAGTACGAATGGCGTCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP039853.1\|WP_139758211.1\|288868_289576_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039853.1\|WP_139758228.1\|305792_306572_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039853.1\|WP_139758225.1\|302987_304454_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039853.1\|WP_139758215.1\|293074_293611_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238804
NZ_CP039853.1\|WP_139758218.1\|294981_296190_-\|Flp-pilus-assembly-complex-ATPase-component-TadA	unknown	unknown	gnl\|CDD\|131576
NZ_CP039853.1\|WP_139758220.1\|297028_297517_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039853.1\|WP_139758212.1\|289572_290052_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039853.1\|WP_139758213.1\|290194_292456_+\|DotA/TraY-family-protein	unknown	unknown	gnl\|CDD\|275142
NZ_CP039853.1\|WP_139758230.1\|307455_307773_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240437
NZ_CP039853.1\|WP_139758229.1\|307252_307468_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039853.1\|WP_139758224.1\|302630_302894_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039853.1\|WP_139758226.1\|304565_304901_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039853.1\|WP_139758223.1\|300925_301135_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039853.1\|WP_139758221.1\|297850_298843_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271175
NZ_CP039853.1\|WP_139758216.1\|293631_294681_-\|ParM/StbA-family-protein	unknown	unknown	gnl\|CDD\|212669
NZ_CP039853.1\|WP_139758227.1\|305010_305331_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039853.1\|WP_139758219.1\|296186_297029_-\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	unknown	unknown	gnl\|CDD\|374893
NZ_CP039853.1\|WP_139758222.1\|300323_300929_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039853.1\|WP_139754917.1\|287677_288628_+\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP039853.1\|WP_139758214.1\|292502_293078_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP039853.1\|WP_139758230.1\|307455_307773_-\|hypothetical-protein	gnl\|CDD\|240437	PTZ00487, PTZ00487, ceramidase; Provisional.	0.00462488
NZ_CP039853.1\|WP_139758215.1\|293074_293611_-\|hypothetical-protein	gnl\|CDD\|238804	cd01570, NAPRTase_A, Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).	0.00763891
NZ_CP039853.1\|WP_139758218.1\|294981_296190_-\|Flp-pilus-assembly-complex-ATPase-component-TadA	gnl\|CDD\|131576	TIGR02524, ATP-binding_protein, Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.	5.07228e-57
NZ_CP039853.1\|WP_139758216.1\|293631_294681_-\|ParM/StbA-family-protein	gnl\|CDD\|212669	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins. ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments.	4.45242e-37
NZ_CP039853.1\|WP_139758219.1\|296186_297029_-\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	gnl\|CDD\|374893	pfam16932, T4SS_TraI, Type IV secretory system, conjugal DNA-protein transfer. T4SS_TraI is a family of putative Gram-negative, largely Proteobacterial, type IV conjugal DNA-Protein transfer or VirB secretory pathway (IVSP) proteins.	1.53767e-37
NZ_CP039853.1\|WP_139758213.1\|290194_292456_+\|DotA/TraY-family-protein	gnl\|CDD\|275142	TIGR04346, DotA_TraY, conjugal transfer/type IV secretion protein DotA/TraY. Members of this protein family include transfer protein TraY of IncI1 plasmid R64 and DotA (defect in organelle trafficking A) of Legionella pneumophila.	1.99407e-81
NZ_CP039853.1\|WP_139754917.1\|287677_288628_+\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	1.52636e-87
NZ_CP039853.1\|WP_139758221.1\|297850_298843_+\|site-specific-integrase	gnl\|CDD\|271175	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine based site-specific recombinases (integrases) that share the same fold in their catalytic domain containing conserved active site residues. The best-studied members of this diverse superfamily include Human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase, and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl generated by recombinase cleavage to a new 3' phosphate partner located in a different duplex region. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	0.000375876

>NZ_CP039853.1|WP_139758220.1|297028_297517_-|hypothetical-protein
MRNFAILVVVGVFFQGCTNTPQEVVPERVSPVEAKINSLAEIVVKRTTRIQQLQEANYIAINGQAPKRPDLDLLPVLKQVKSLGKQYTGPLDTFIKRLSVVSSMNPPRFLNVKPTFDIIVTVDTDYKSVFSMLEQVGAVTGSRADVYYKAAENLIEVKYADY
>NZ_CP039853.1|WP_139758219.1|296186_297029_-|type-IV-secretory-system-conjugative-DNA-transfer-family-protein
MMKRFIPLLICFSSIAFGAETVNFPLTLKEKGSDESRLVMKSILDASIDSETNLKHEKDVGERLKKVTQAAFDWGVKEGQYYFNKINQNQLNNYDSKLQVLANFAQFIVDGKLLLPKVVISERLFQRINDSKVRTTGFSYSLFEPAKIITQPPTWRDYLSIALQKPSKPSALFLPRSKQEESVFRYEFERGWEYGREQASIIFEENYKRLERDLKLHFNFLDLAMTNVLRMPSLRSTDPTVVVSSDGKTLYGNDVFYSIDQQSTFEKLDKWKPVFIEGGR
>NZ_CP039853.1|WP_139758218.1|294981_296190_-|Flp-pilus-assembly-complex-ATPase-component-TadA
MIEIHNRFTRDQLDTSLRWAVKHAVNDLIIESGSPLWAKKNGVTSPVSNRPVSQEEISQLLQDLYLASGPDHLTKGKYLRFAYEILINIDEKHRFRVTATGVKSEFNDNGIELIFRPFPKMAPQPDEIGLPREFVDSFDSDFGVVFVSGPTGSGKSTTIASTLTERILSKRERILTIEDPIEFDFKNIPNRIANVVQSEVPMHLIDYETSTANSLRRSPDIIFYSEVREASVGQELLRVANTGHLVATTLHANTAEMTLPRFVDMFEFGQRPVITGDLIESIRGILNQRLFRAPDLTSRTAVRSWVVFSQSIRDEMYDKYAEGSSFRLKQQVAKAVKDHGLSFIDDLRAKFNDGQIAISDFARAIQSVGEPKDLRIIGSKLDEFMDRGFIDENDYKYWKRIL
>NZ_CP039853.1|WP_139758216.1|293631_294681_-|ParM/StbA-family-protein
MVIKDLSQLPPPYEFEDGIYPVVVDNGYAQQKCAYWANVEGKKTRVNFIVPSRAQMGRINVDVHGEASGVYTVSGSDYTVAADIREPEVMRSKNYAFSEINCALVHHTLVLAGFGGKKVRLATGLPFSHYFRNRSVDETFVQKVKSSLLQPCESAVGKAMPEIISHTIYPESTAAAVSYAYNEETGDLKSFENGLVVIDMGGGTTDITIVNGDFTLDMDLSGSRQLGVIDIRESLRTAIEAAFDVSGMTDKQLDLALRSGEFKLYGEPKDITSLIDSSTQLTVKKLSTLLSETIGEGAFLDDILFVGGGAQILSEAFKDRYQQAHVPAEAEFENANGMLDYMILTNQAA
>NZ_CP039853.1|WP_139758215.1|293074_293611_-|hypothetical-protein
MAKKGRFIVHLYRSCPFEDEVASYIEKCSQEDIRHLLSQGLWLEDFIEFNGGDLSDRRFSGSLKEESDNEHSFFLRFPGSDSRLSISRIQQAWERVQMFNTFPGRLAYLRKLIFRGYLAEHAFEDKYSDLFSALMTQSVVVKQSVNLKAPQKEFPAVSNPDDITMKRESAKAKLTGLM
>NZ_CP039853.1|WP_139758214.1|292502_293078_-|hypothetical-protein
MKKTISSLALTVMLASNTATAGFYIDMQGLNKAQKTIPGVADGYKMLTGKYYGIIHEVGKGNPSKTHSFGDSSTIADAMFMIMPDGWYAFVDETVEEIPLVSWDASHDKGQYWTDVLADIGKDYGLRYVIDWDQKLVQIDLEPDFTKPDYDDPIVVADSNDERQMFIYKKKPNLSGYLLRDGEYIPVKVSN
>NZ_CP039853.1|WP_139758213.1|290194_292456_+|DotA/TraY-family-protein
MKNWLKITVAALLFFVSGAALSQQDDGNEGYESEPIIENTNDLGVQILRGVLGDVVNIISGGELPRKPDTTLGAVMKIWCGALAAVATLLVAFGGFKWFFGSIHSGKLNEQKMDTTGVPVRMVIALVSVMPLAAGYCAYQLAHIYLTGHSLKVANRLTDTAIEFMSIDSFNRKTMPVDSDKIAAQAFETLVCAHAVNAAEGVDSGEAIIKPSHVLDLSGSGDGETDAYGIKYGENSNSWFESNSYSANACGEYSIKFSEPDFRMTTDGKAENDLLNANYLALQTLFSDMSKPASTFVNKIYIEQIESAELRDLHAETRLRIKSLSEQYKMAIVLAREQYAQAKTDELKKPDSELPNYLSSTPSFLDNYSISDVGFIGLGATWWIDSIRTQSFTNMLSSMNVQATPIDDKALLHEDLTDIWAETYRVTNGQSGRITISSAGNVQNLSKQKDENFSWLISASLALVKETNDPLFALMELGHEMIVTAESLIAVLLLADITIEVSDNLANVDATSIPFIGTMLNAAKAVVTGTAEGSAKHIATGLMLLIGLLLTMGVYLAFYLPTIPLMHWLGGVIGAFSAALEQIILAPIHGISHAFTDGHGFVGERAKQGYILAFGSFLRFPMLVISFIVVYPLLLMMGFVTFLLWTPFAESMSSTTTTGIISFFGLSAALIAVCVSVIERVFSIMHEINDKALRALGHGADSMGAQGYVHSGNQQFSTVQSTISKAPEGLGGATPQGGNVPGPLEGTQNRDLK
>NZ_CP039853.1|WP_139758212.1|289572_290052_-|hypothetical-protein
MSVNIEFDDNAIKKHWSRYPQLKSFFDRMSLAEVWVLDDEINVKARVANWVESLNERKLKALNDDLPSLLTVLAFQRVQSSMYLLQRLEQRLPGITNSLTFSANNLLTNEQYNRPAKILLERLAAAHTQVSLQELLNNERLALVYAALNNVNDRKGKML
>NZ_CP039853.1|WP_139758211.1|288868_289576_-|hypothetical-protein
MNRLKVILFSMALIPAPIFAQQAGGVATNAFSCPSGDDSIACKQKEQVEAIWVDMNKSATYLTDELIQNPDSATEAGCLNDIMQLDLSVITVDPYGIWNSVYAGLKDQLMNMACSAVEDKLNEASAYLDAKLEAPMGLGSVSLGQSGRVNSFSDIQDSRVYMNDREAQEAVVEEVFGEYPRVNQRRWTEQEIEQRRIENGGPSTRSRRSAQEEKVRSVLNVNRIFGESDKGNKDE
>NZ_CP039853.1|WP_139754917.1|287677_288628_+|IS30-family-transposase
MSYKQLIEGQRYQIEAYLREGFSYREIGKRLSVSHSTISREVNRNRIRDNHYLPEVAQAKALKRRSQAAKFRISELTITFVEFGLNQKWSPEQIAGVGKIIGHHVSHEWIYRYVQRDKLRGGRLYKQLRQSHRRYRKGDRAKRIIIPNRVGIEHRPAIVNKKKRFGDWEADTVLGKQGTGAIVSLVERKSKLYLIRKVPAKSAADVARAMVGMLWKYRGHVRTITADNGSEFCDHALVAEKLKTNIYFANPYSSWERGLNENFNGLLRQYIRKGTDLRTVSDRQISEIERALNARPRKCLGFRQPVAVFNELRKAA
>NZ_CP039853.1|WP_139758221.1|297850_298843_+|site-specific-integrase
MKERTKTEGTITEYTSRIVTMARRVDCPHNSPHFPDALLKQLLIEKTSISKATWFKKKASLIYYFEQVNRDDLIEKLQVMKPEGALSKSSNTSGRKKKSLTKNEEDKVRFELEKMAKSSNTWGRQLLSYTECILLTGMRPIELHGAKLYSSSTEFISEGNILGDYSGNWPMLHIHNGKQTNGRSFGIKRHVDLSQLNKKQLLYIKISLAYANSLETPTGQSTDYKQYYDALRHAFSRVIKKLFSGRSSFISLYTYRHQCIADLKADDNYSLLQIAAIVGHGNDLTATEHYGRKKSGRSREAKVQANDVDVAKVRPLLNEKMNNITSHKPH
>NZ_CP039853.1|WP_139758222.1|300323_300929_-|hypothetical-protein
MKRGKRKMAFIKGENVSTFKNLSTLLVQVLIFLSLIQGCSGDEQDSNESMSSDTSIADDFLSEDELAKLLKFSNEMPLTLSGYFENYTWSWSSSMSRELGMQNIESNMKDFPELYQSTENVFEEWKNKGWKHSDQYSVDGNGNISVAIVKDYLDNKHLGKNIGAAYGISNQQLAHMIILSKGWERKFHESIQSRADMKVTE
>NZ_CP039853.1|WP_139758223.1|300925_301135_-|hypothetical-protein
MSILHKPHSPNSWLIPDRELDAMMKMFNKQNGAGLDDPIDIRVRNQFYKMEACGKRVYKDAMTKIGVEV
>NZ_CP039853.1|WP_139758224.1|302630_302894_+|hypothetical-protein
MTGITFDVRSPCLNDGKRELVVKLAALMGYWIAGMLMLIDAKSLAGALFWPCLIIYIWWEYLCVPGGIRTVLFIVLNTYAGMRDISP
>NZ_CP039853.1|WP_139758225.1|302987_304454_-|hypothetical-protein
MSVYVLDNHEFATLATFLVNTTSSEAIKAKGVKSIAHTLREANIQSFMGRYDADSYERDIINLSIESLPDAKEIFFMARNLVIESVEWPDYFKSEAKKLADEILRLSLCPSVAGGTQTFNVTIKEPETAAGNIIHNKGPFGGEGIIVGARREAGGYMLGTGKLSGLVWDVIKLDGSNRNFVLTQWHAESCEFAELDLLPLMPVEAVEGLRDQILEQRLTEQKAREEAIKETQKQTEAFRAHCKTIMPEKTKAIIIANLVEDDSDSMSDYHGSTTKKTILLAWSKHTRDIFSEMRKAAANHPSTAALKDAPDEAEHREKWSMGGGYYLKDGYRHSTGWEVRKVKLYDERSIPLAELAECLQPAKKTQAPTPQATKTETCTQAPDTADGYINIEYNEEKNGVELRFQEKPEGEILESLRTGPFRFHRKGRFWYAKQSDKAEANIAVILGHISKMLTTCKKPHSEKTDEKPAPESNREPATPITMSSILFG
>NZ_CP039853.1|WP_139758226.1|304565_304901_-|hypothetical-protein
MLETFKKINFTPVAGYQYPITVTLPCGKTLQGMALCVDDVVCNGIYEFSAGFNSLEIGALNHLDEIGDMLDHDFVEESILYGLNDGGCMQVRTNYGLEWEVSDQGVPVTTH
>NZ_CP039853.1|WP_139758227.1|305010_305331_-|hypothetical-protein
MKIQAVVNEKDTCVFEIQQVSKLREVRVTVNYKTGAITYSDPKGRMTNEEKALFVEGILTTLEKCVQNCLSLMKTNPSTALKNLVKMWQGQQKAIRDANVYIQLAS
>NZ_CP039853.1|WP_139758228.1|305792_306572_+|hypothetical-protein
MKWILRIVTLQALFLLSFSSSASSADDFMITYCDTCSSSTDFSRAANVANSGKVLVFNLRHSKVKAFQLYYEPMLGGTQAVPISVPQEAFDAIDMYHNIIDYYIGYLNNTTSFDSTMKLADKSAFPLSTQSQIHGSMGLACGPSGNPQKASFIPDGIFGPACAAHDSCYDSGQPQALCDAIFREDLYGVIEDALYNSSSLLTRAIARKALREIADEYADFVEQSEEARDAYCSVSINSSKPSCTMEPWSHGATKTITLI
>NZ_CP039853.1|WP_139758229.1|307252_307468_-|hypothetical-protein
MRTIELELTGDDCSTITQYKTPVERAKGYTGRIIINTQRLAELHEENAWALVQVALFRIKHGSKQSGKKQI
>NZ_CP039853.1|WP_139758230.1|307455_307773_-|hypothetical-protein
MEQLALNKNLRRLVFMWGLCGAALVPGVVMLLIIAMTIPLMIEVPSFTIDMAEYWLGDTLRAIISLTWPAILKIGLIIMVSGYIVTFDKFIQANRGETGEGVCAQ

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Crispr_ID: NZ_CP039853_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP039853_2

308848-310195

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	CRISPRCasFinder
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	CRT
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	PILER-CR

22 spacers

cas6f,cas7f,cas5f,cas8f,cas3f,cas1

The CRISPR arrays of NZ_CP039853_2

>merge|NZ_CP039853|2|308848-310195|CRISPRCasFinder,CRT,PILER-CR
TTTCTAAGCCGCCTGTGCGGCGGTTAAGGGCGGGCGTTGGTGTGCCGGGCCGGGTGATTTTTTCTAAGCCGCCTGTGCGGCGGTTAAGTTTTCAAACCAGCCCCGGATCTTGATTTCGTCTTTCTAAGCCGCCTGTGCGGCGGTTAAGTCGCTACAGAAAAAGCGATCACCATCCATAGTTTTCTAAGCCGCCTGTGCGGCGGTTAAGGTAGCCGCAGAGGGCGCGCAACTTTCCTTGCATTTCTAAGCCGCCTGTGCGGCGGTTAAGCGGGCTTTGTCGTTAATGTTAAATGGTTACCATTTCTAAGCCGCCTGTGCGGCGGTTAAGGCGCTACGTGTGGGGCGCGAATGGTGCAACCATTTCTAAGCCGCCTGTGCGGCGGTTAAGCGCTCAGCCTGGAACGGGTACGGATACGTCGATTTCTAAGCCGCCTGTGCGGCGGTTAAGTTTACCTCATCTTCGCTCATGCCATCTTTATATTTCTAAGCCGCCTGTGCGGCGGTTAAGGACGGCTTACACGCATCAGCCGAAAATTTATATTTCTAAGCCGCCTGTGCGGCGGTTAAGCGACACGGTGCGCCGGTTCTGGATGCGTCCACTTTCTAAGCCGCCTGTGCGGCGGTTAAGTTGAGCGTCAGATTCTCGTTAAATACGATGATTTTCTAAGCCGCCTGTGCGGCGGTTAAGCCGGATGGCTCCCTTTTAAACCATTACGTGCTTTTCTAAGCCGCCTGTGCGGCGGTTAAGGGTAAACCCGTGCGCCTGGTGTCGGGCGGGTCTTTCTAAGCCGCCTGTGCGGCGGTTAAGAACAATCATGTCAGCTGGCTCAAGGCCGTTAATTTCTAAGCCGCCTGTGCGGCGGTTAAGTAACTATCTTCAATGGAATTATCAGACTCATCTTTCTAAGCCGCCTGTGCGGCGGTTAAGGCTATTTCCACCTGTTGCATGATTGCTTGTAATTTCTAAGCCGCCTGTGCGGCGGTTAAGTTCCTCAGCCTGCTGCTTTTGTGAGCCGGTCATTTCTAAGCCGCCTGTGCGGCGGTTAAGCCAGGGTAATATCATCAAAGCTGGCATCTTTATTTCTAAGCCGCCTGTGCGGCGGTTAAGTCAGGTGCGCCCTTTGTTTTGCATTGCCTGCATTTCTAAGCCGCCTGTGCGGCGGTTAAGTTTTTTTACTCCCTTTGTTTATTAACGAACAATTTCTAAGCCGCCTGTGCGGCGGTTAAGGTATCTTTGTTGTGAGCCGGTAAAGGCTTTCATTTCTAAGCCGCCTGTGCGGCGGTTAAGACAGGGGAATTTCAATGAACTGGGCGGATATATTTCTAAGCCGCCTGTGCGGCGGTTAAG

>NZ_CP039853|2|1|308848-310195|CRISPRCasFinder
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	GGCGGGCGTTGGTGTGCCGGGCCGGGTGATTT
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	TTTTCAAACCAGCCCCGGATCTTGATTTCGTC
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	TCGCTACAGAAAAAGCGATCACCATCCATAGT
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	GTAGCCGCAGAGGGCGCGCAACTTTCCTTGCA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	CGGGCTTTGTCGTTAATGTTAAATGGTTACCA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	GCGCTACGTGTGGGGCGCGAATGGTGCAACCA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	CGCTCAGCCTGGAACGGGTACGGATACGTCGA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	TTTACCTCATCTTCGCTCATGCCATCTTTATA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	GACGGCTTACACGCATCAGCCGAAAATTTATA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	CGACACGGTGCGCCGGTTCTGGATGCGTCCAC
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	TTGAGCGTCAGATTCTCGTTAAATACGATGAT
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	CCGGATGGCTCCCTTTTAAACCATTACGTGCT
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	GGTAAACCCGTGCGCCTGGTGTCGGGCGGGTC
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	AACAATCATGTCAGCTGGCTCAAGGCCGTTAA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	TAACTATCTTCAATGGAATTATCAGACTCATC
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	GCTATTTCCACCTGTTGCATGATTGCTTGTAA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	TTCCTCAGCCTGCTGCTTTTGTGAGCCGGTCA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	CCAGGGTAATATCATCAAAGCTGGCATCTTTA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	TCAGGTGCGCCCTTTGTTTTGCATTGCCTGCA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	TTTTTTTACTCCCTTTGTTTATTAACGAACAA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	GTATCTTTGTTGTGAGCCGGTAAAGGCTTTCA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	ACAGGGGAATTTCAATGAACTGGGCGGATATA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG

>NZ_CP039853|2|1|308848-310195|CRT
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	GGCGGGCGTTGGTGTGCCGGGCCGGGTGATTT
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	TTTTCAAACCAGCCCCGGATCTTGATTTCGTC
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	TCGCTACAGAAAAAGCGATCACCATCCATAGT
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	GTAGCCGCAGAGGGCGCGCAACTTTCCTTGCA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	CGGGCTTTGTCGTTAATGTTAAATGGTTACCA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	GCGCTACGTGTGGGGCGCGAATGGTGCAACCA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	CGCTCAGCCTGGAACGGGTACGGATACGTCGA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	TTTACCTCATCTTCGCTCATGCCATCTTTATA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	GACGGCTTACACGCATCAGCCGAAAATTTATA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	CGACACGGTGCGCCGGTTCTGGATGCGTCCAC
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	TTGAGCGTCAGATTCTCGTTAAATACGATGAT
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	CCGGATGGCTCCCTTTTAAACCATTACGTGCT
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	GGTAAACCCGTGCGCCTGGTGTCGGGCGGGTC
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	AACAATCATGTCAGCTGGCTCAAGGCCGTTAA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	TAACTATCTTCAATGGAATTATCAGACTCATC
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	GCTATTTCCACCTGTTGCATGATTGCTTGTAA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	TTCCTCAGCCTGCTGCTTTTGTGAGCCGGTCA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	CCAGGGTAATATCATCAAAGCTGGCATCTTTA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	TCAGGTGCGCCCTTTGTTTTGCATTGCCTGCA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	TTTTTTTACTCCCTTTGTTTATTAACGAACAA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	GTATCTTTGTTGTGAGCCGGTAAAGGCTTTCA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	ACAGGGGAATTTCAATGAACTGGGCGGATATA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG

>NZ_CP039853|2|2|309508-310195|PILER-CR
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	CCGGATGGCTCCCTTTTAAACCATTACGTGCT
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	GGTAAACCCGTGCGCCTGGTGTCGGGCGGGTC
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	AACAATCATGTCAGCTGGCTCAAGGCCGTTAA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	TAACTATCTTCAATGGAATTATCAGACTCATC
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	GCTATTTCCACCTGTTGCATGATTGCTTGTAA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	TTCCTCAGCCTGCTGCTTTTGTGAGCCGGTCA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	CCAGGGTAATATCATCAAAGCTGGCATCTTTA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	TCAGGTGCGCCCTTTGTTTTGCATTGCCTGCA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	TTTTTTTACTCCCTTTGTTTATTAACGAACAA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	GTATCTTTGTTGTGAGCCGGTAAAGGCTTTCA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG	ACAGGGGAATTTCAATGAACTGGGCGGATATA
TTTCTAAGCCGCCTGTGCGGCGGTTAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP039853.1\|WP_168190731.1\|311922_312858_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09736_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP039853.1\|WP_139758233.1\|310323_310887_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|187870
NZ_CP039853.1\|WP_139758230.1\|307455_307773_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240437
NZ_CP039853.1\|WP_139758236.1\|312857_314192_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09735_cas8f_CAS-I-F	gnl\|CDD\|378220
NZ_CP039853.1\|WP_139758242.1\|320142_320781_-\|recombination-enhancement-function-protein	unknown	unknown	gnl\|CDD\|374800
NZ_CP039853.1\|WP_139758227.1\|305010_305331_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039853.1\|WP_139758240.1\|319188_319422_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039853.1\|WP_139758234.1\|310898_311903_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP039853.1\|WP_139758239.1\|318944_319151_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039853.1\|WP_139758225.1\|302987_304454_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039853.1\|WP_139758237.1\|314225_317597_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
NZ_CP039853.1\|WP_139758228.1\|305792_306572_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039853.1\|WP_139758232.1\|308315_308603_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226079
NZ_CP039853.1\|WP_168190732.1\|319621_320104_+\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|367615
NZ_CP039853.1\|WP_139758226.1\|304565_304901_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039853.1\|WP_139758223.1\|300925_301135_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039853.1\|WP_139758224.1\|302630_302894_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP039853.1\|WP_139758238.1\|317598_318567_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP039853.1\|WP_139758231.1\|308007_308307_-\|HigA-family-addiction-module-antidote-protein	unknown	unknown	gnl\|CDD\|225635
NZ_CP039853.1\|WP_139758229.1\|307252_307468_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP039853.1\|WP_168190731.1\|311922_312858_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	5.36872e-123
NZ_CP039853.1\|WP_139758232.1\|308315_308603_-\|hypothetical-protein	gnl\|CDD\|226079	COG3549, HigB, Plasmid maintenance system killer protein [General function prediction only].	0.00143295
NZ_CP039853.1\|WP_139758230.1\|307455_307773_-\|hypothetical-protein	gnl\|CDD\|240437	PTZ00487, PTZ00487, ceramidase; Provisional.	0.00462488
NZ_CP039853.1\|WP_139758236.1\|312857_314192_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	6.25198e-143
NZ_CP039853.1\|WP_168190732.1\|319621_320104_+\|PH-domain-containing-protein	gnl\|CDD\|367615	pfam03703, bPH_2, Bacterial PH domain. Domain found in uncharacterized family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices. Members of this family have a PH domain like structure.	5.72543e-09
NZ_CP039853.1\|WP_139758233.1\|310323_310887_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	3.49818e-71
NZ_CP039853.1\|WP_139758234.1\|310898_311903_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP039853.1\|WP_139758242.1\|320142_320781_-\|recombination-enhancement-function-protein	gnl\|CDD\|374800	pfam16786, RecA_dep_nuc, Recombination enhancement, RecA-dependent nuclease. REF is a family of P1-like phage RecA-dependent nucleases. It does not appear to act as a positive RecA regulator. It is a new kind of enzyme, a RecA-dependent nuclease.	3.36257e-18
NZ_CP039853.1\|WP_139758238.1\|317598_318567_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NZ_CP039853.1\|WP_139758231.1\|308007_308307_-\|HigA-family-addiction-module-antidote-protein	gnl\|CDD\|225635	COG3093, VapI, Plasmid maintenance system antidote protein [General function prediction only].	6.91294e-25
NZ_CP039853.1\|WP_139758237.1\|314225_317597_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0

>NZ_CP039853.1|WP_139758232.1|308315_308603_-|hypothetical-protein
MIVSFKSSVLQEFFESGDVTLLPSAYVYEVAEVLEYLDAAIQITDLELLGGFTIYEYQPDNWSVTVTVNSVEPVGSVTCMFMNSNAYDVDLNQYD
>NZ_CP039853.1|WP_139758231.1|308007_308307_-|HigA-family-addiction-module-antidote-protein
MSIKRSRNFPSTHPGTVFKRRVLDRHEISIKEAAEKLHVTRAHLSRFVNGNVGVKVDFALRLEKASGISAQFWMNLQQAYDLHMKRDEVIDCEELYEYA
>NZ_CP039853.1|WP_139758230.1|307455_307773_-|hypothetical-protein
MEQLALNKNLRRLVFMWGLCGAALVPGVVMLLIIAMTIPLMIEVPSFTIDMAEYWLGDTLRAIISLTWPAILKIGLIIMVSGYIVTFDKFIQANRGETGEGVCAQ
>NZ_CP039853.1|WP_139758229.1|307252_307468_-|hypothetical-protein
MRTIELELTGDDCSTITQYKTPVERAKGYTGRIIINTQRLAELHEENAWALVQVALFRIKHGSKQSGKKQI
>NZ_CP039853.1|WP_139758228.1|305792_306572_+|hypothetical-protein
MKWILRIVTLQALFLLSFSSSASSADDFMITYCDTCSSSTDFSRAANVANSGKVLVFNLRHSKVKAFQLYYEPMLGGTQAVPISVPQEAFDAIDMYHNIIDYYIGYLNNTTSFDSTMKLADKSAFPLSTQSQIHGSMGLACGPSGNPQKASFIPDGIFGPACAAHDSCYDSGQPQALCDAIFREDLYGVIEDALYNSSSLLTRAIARKALREIADEYADFVEQSEEARDAYCSVSINSSKPSCTMEPWSHGATKTITLI
>NZ_CP039853.1|WP_139758227.1|305010_305331_-|hypothetical-protein
MKIQAVVNEKDTCVFEIQQVSKLREVRVTVNYKTGAITYSDPKGRMTNEEKALFVEGILTTLEKCVQNCLSLMKTNPSTALKNLVKMWQGQQKAIRDANVYIQLAS
>NZ_CP039853.1|WP_139758226.1|304565_304901_-|hypothetical-protein
MLETFKKINFTPVAGYQYPITVTLPCGKTLQGMALCVDDVVCNGIYEFSAGFNSLEIGALNHLDEIGDMLDHDFVEESILYGLNDGGCMQVRTNYGLEWEVSDQGVPVTTH
>NZ_CP039853.1|WP_139758225.1|302987_304454_-|hypothetical-protein
MSVYVLDNHEFATLATFLVNTTSSEAIKAKGVKSIAHTLREANIQSFMGRYDADSYERDIINLSIESLPDAKEIFFMARNLVIESVEWPDYFKSEAKKLADEILRLSLCPSVAGGTQTFNVTIKEPETAAGNIIHNKGPFGGEGIIVGARREAGGYMLGTGKLSGLVWDVIKLDGSNRNFVLTQWHAESCEFAELDLLPLMPVEAVEGLRDQILEQRLTEQKAREEAIKETQKQTEAFRAHCKTIMPEKTKAIIIANLVEDDSDSMSDYHGSTTKKTILLAWSKHTRDIFSEMRKAAANHPSTAALKDAPDEAEHREKWSMGGGYYLKDGYRHSTGWEVRKVKLYDERSIPLAELAECLQPAKKTQAPTPQATKTETCTQAPDTADGYINIEYNEEKNGVELRFQEKPEGEILESLRTGPFRFHRKGRFWYAKQSDKAEANIAVILGHISKMLTTCKKPHSEKTDEKPAPESNREPATPITMSSILFG
>NZ_CP039853.1|WP_139758224.1|302630_302894_+|hypothetical-protein
MTGITFDVRSPCLNDGKRELVVKLAALMGYWIAGMLMLIDAKSLAGALFWPCLIIYIWWEYLCVPGGIRTVLFIVLNTYAGMRDISP
>NZ_CP039853.1|WP_139758223.1|300925_301135_-|hypothetical-protein
MSILHKPHSPNSWLIPDRELDAMMKMFNKQNGAGLDDPIDIRVRNQFYKMEACGKRVYKDAMTKIGVEV
>NZ_CP039853.1|WP_139758233.1|310323_310887_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYLDIKILEDPEFTAPILMNALFSKLHRALVAVSDNDIGVSFPSANRSTLGKQLRVHGTKERLEQLEQFPWRKGLGDFTNVVGINKTPDTKEYWLVQRMHVQSSPDRLRRRAMKRHSLTYDQAVERIPDSAGKRLDLPFIRIKSRSTNGQQFPLFIKQTLLAEVKTSAIFFSKYGLSATTPVPKF
>NZ_CP039853.1|WP_139758234.1|310898_311903_-|type-I-F-CRISPR-associated-protein-Csy3
MAAIKTASVLAFERKLANSDGLLFAGNWATPDGEWKPITLKVKSVRGTISNRQKNTILKDPAKLDQEVNKANLQTVDTAALPFDCDTLKVVFSLRVLGDLATPSACNSPEYQEVLRSTIESYIEEQSFDVLAHRYASNIANGRFLWRNRVEAEDISVRVTQTKKDGDTTWVFNGYDLALRNFDFQSDDLKAFAKEVQKGLTSDAFAYFQVEAFVKLGEGQEVFPSQELVLDGKSDKSKVLYHVDGIAALHSQKIGNAIRTVDTWHQSAAEVGPISAEPFGSVTSRGKAYRNNKDDFYTLFDKWMEKGQAPELDQQHYVIANLIRGGVFGGKSDT
>NZ_CP039853.1|WP_168190731.1|311922_312858_-|type-I-F-CRISPR-associated-protein-Csy2
MEKLLVIRHLQVEAANAIAGITWGFPAMTSFLGLTHALQRKVQAGISNKITLSGCAVICHASQVQAHSNNMSRENYFALTRNPLTKDGSTAPFNEEGRMRMDISLLILLSGPTPPMFEDELVEFIKSALLTSRVAGGKVKQLGEVELIKDIGAINRESGTRKSFLRKLLPGFALVSRDDVLQSHIEESQKTPLDALLDFSIKRMAAQTKGDRAEWRTERLDYIGWLKPIMVGYQGISDLYEAGEVGHVRDRTCPVQFVESIYSLGQWISPHRISDLKHLFWQQEYHADNALYLCKNNYQPDAPASLSSETD
>NZ_CP039853.1|WP_139758236.1|312857_314192_-|type-I-F-CRISPR-associated-protein-Csy1
MEREERTLSEKIRDYIDSRKRDKLEKFDKDTQKGVSAASTEDVAAYELQRTALRVTEEGRFKPVNWLSDAANRAKQLQLVTHALKFTHSDAKGTSLFANANKSASTFISTSSINNPKIDVVGNAAALDVGKLLLLESDNGKLLANFVQQNDMSPFEPFAESKAQLNDWLGGFKLAVTAKDPTSHKLSKQLYWPVDDDYHLVLPLYGTSLSQEIFERVQYARFSEEQKEARAARRSEKMSDIATIEFQDIAVQGFGGTKPQNISQLNSGRGGRAFLLSSSPPAWQSQQKPPLKVKSIFRGPFSRRVYGQIMGLKKFLVANLNKRSDMKIRTERARRIEDIVDQLVAYGTGVRTSSPGWSSLPDCHLPLHQKLWLDPKRRDFDKEFENEFDKKEWQGLVAADFSRFLNTELEKNSDIATGDVEFMQWKVLTAQELRLVKDDVEEAF
>NZ_CP039853.1|WP_139758237.1|314225_317597_-|type-I-F-CRISPR-associated-helicase-Cas3
MNILLVSQCSKKALKETRRVIDQFAERAGDRTWQTAITEQGLVTLRKLLKKTARRNTSVACHWIRGNNRTELKWLVGNPRRFNEWGTVPTNITGRDILRSGDENKWHTVEDIRILAGIAALFHDFGKANKAFQDKLNPNNKTQNYEPYRHEWVSVRLFEAFVLYATEGVNTNEQDAAWLTILSDLPDDIESKVMANLKKDGIDKKIYSPLSLLPPVAKAVAWLILSHHRLPEPSDGNTDYEKYPESLMDDYIDASWNSPQCGNQDWKLSEIEAVWAFQQGSPFCSKVWCERISRIASQGRKRSQLLTTEWLNKPFSLHLARLGLMLGDHYYSSLKSTGLKSPWHDNKGYKKVYANTWRERGSRDNGKYNQTLDEHLIGVYRHSHQIVRSLSSLKESLPVITRHPLLKKRTPDSRFAWQNKAYELAVSVRDNVKQHGFFGINVASTGKGKTFANARVMYGIADEKKGCRFSVALGLRTLTLQTGDAFKELLRLDDEDLAVLIGSKAVKDLHERVQTKQVLAEESKQDALLGSESANDFSDRDSYVSYEGMLSDGPLSRWLENAPQNNKLVNAPVLVSTIDHLMPSTEGSRGGKQIAPMLRLLTSDLVLDEPDDFGLEDLPALCRLVNWAGMLGSNVLLSSATLPPDLIHALFDAYLAGRKHYETSVSVNPSRTPNVVCAWFDEFLSDSIQASNLSVFSAHHQKLMASRADKLLGQSIKRLVALVDCDDKNGSDEQGNGEIVEATVIQALSNRIHQSILALHNDHHHPHPYLSAKTSFGLVRMANINPLVAVAKSLMNKPSPDGIQIHYCVYHSQFLLLQRSAIEQMLDTILNRKDSNAIWGQPSVSNALNAHPNDQHIFVVLGSPVTEVGRDHSYDWAVVEPSSIRSLIQLAGRVLRHSDATVDNPNIHLLNQNIRAMKNEKAAYTKPGFESPEFLLESHKLNDLVEVSEYQTISALPRIQKRNKLAPTKRFVDLEHAALHAQLWGTAKENGEAFASLWWEKPCHWTNHLQRKLPFRRHTPDESYCFYLDEEYEEPTMHRWHESGELKADDKQHFQRDQQPAFATGVHNWAKHFDYQSTLIALAEALNRELSETSMQFGTIRLRKNDEDNVWQQSEVLGFYKPF
>NZ_CP039853.1|WP_139758238.1|317598_318567_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MEQFSPSEMKTILHSKRANMYYLEYCRVLVKDGRVEYVTDEGKQSCYWNIPIANTTTLLLGNGTSITQAAVRELAKAGVLIGFCGGGGAPLFSTNEVDVDVSFFSPQSEYRPVGYLQNWVSFWFDKSKRLQAAKLIQQHRIKFTRAQWLKNKQLKEAKFTVDPDALNQALVQFEQQVQSSKDTQALMLSEARLTKNLYKIICSVTGYNDFSRVKQGAGTDFANHFLDHGNYLAYGLGATATWVLGLPHGLSVLHGKTRRGGLVFDAADLVKDGVVLPQAFLSAMNGDSEQEFRQACIAAVRQSEALDFMIDSLKAISDKCSA
>NZ_CP039853.1|WP_139758239.1|318944_319151_-|hypothetical-protein
MIDGQATPFGKPHFLPTQPNDEKLRTTIQTLESRFVDIVIAMNGLPMLIEKHVSNVMAYRHDKKKKYE
>NZ_CP039853.1|WP_139758240.1|319188_319422_-|hypothetical-protein
MGDSFTAYLNGHPFCPLSRTGSYCANLMQARNGAERVLSQSTAVRVDVFRNGAFKGEVRRTRLPFSKENTYSYTGYV
>NZ_CP039853.1|WP_168190732.1|319621_320104_+|PH-domain-containing-protein
MNKKINPRFSLRAFLLRPMIVVPVLFFAWVPGFPLGLLTAYVLKEVVDYKVSLVAVGIFALILGPAVGLALIYQMSKKALNKSEYVLGDKTVSATSGLMSITTKSFKYSDIVSMSLHQSIGQQEAGVADINIQTASESDIKLWYIPNYKEVYDFINDKRD
>NZ_CP039853.1|WP_139758242.1|320142_320781_-|recombination-enhancement-function-protein
MTDVQIEKRLAQQKRSQERARQRQIEKQRSPEYRAKQREKQRATAERQRAKALANKDKQLEKARAQAKAQRTRAIERAELKGPNSPTRNKPIKFKGMAGKARTKSDMSLHDKLGQLGCICCINAGLIQPFSGSPVSIHHIRGRTITDAHKYVLPLCAWHHDTPVPQDSGVSSDIFPIHSKGSEGGRVRWEEVNGKQHLLLEQVMELVGEGHY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP039853_1	1.1\|297569\|54\|NZ_CP039853\|PILER-CR	297569-297622	54	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	297567-297620	0	1.0
NZ_CP039853_1	1.2\|297643\|53\|NZ_CP039853\|PILER-CR	297643-297695	53	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	297641-297693	0	1.0
NZ_CP039853_2	2.1\|308876\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	308876-308907	32	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	308876-308907	0	1.0
NZ_CP039853_2	2.2\|308936\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	308936-308967	32	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	308936-308967	0	1.0
NZ_CP039853_2	2.3\|308996\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	308996-309027	32	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	308996-309027	0	1.0
NZ_CP039853_2	2.4\|309056\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	309056-309087	32	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	309056-309087	0	1.0
NZ_CP039853_2	2.5\|309116\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	309116-309147	32	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	309116-309147	0	1.0
NZ_CP039853_2	2.6\|309176\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	309176-309207	32	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	309176-309207	0	1.0
NZ_CP039853_2	2.7\|309236\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	309236-309267	32	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	309236-309267	0	1.0
NZ_CP039853_2	2.8\|309296\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	309296-309327	32	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	309296-309327	0	1.0
NZ_CP039853_2	2.9\|309356\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	309356-309387	32	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	309356-309387	0	1.0
NZ_CP039853_2	2.10\|309416\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	309416-309447	32	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	309416-309447	0	1.0
NZ_CP039853_2	2.11\|309476\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	309476-309507	32	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	309476-309507	0	1.0
NZ_CP039853_2	2.12\|309536\|32\|NZ_CP039853\|CRISPRCasFinder,CRT,PILER-CR	309536-309567	32	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	309536-309567	0	1.0
NZ_CP039853_2	2.13\|309596\|32\|NZ_CP039853\|CRISPRCasFinder,CRT,PILER-CR	309596-309627	32	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	309596-309627	0	1.0
NZ_CP039853_2	2.14\|309656\|32\|NZ_CP039853\|CRISPRCasFinder,CRT,PILER-CR	309656-309687	32	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	309656-309687	0	1.0
NZ_CP039853_2	2.15\|309716\|32\|NZ_CP039853\|CRISPRCasFinder,CRT,PILER-CR	309716-309747	32	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	309716-309747	0	1.0
NZ_CP039853_2	2.16\|309776\|32\|NZ_CP039853\|CRISPRCasFinder,CRT,PILER-CR	309776-309807	32	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	309776-309807	0	1.0
NZ_CP039853_2	2.17\|309836\|32\|NZ_CP039853\|CRISPRCasFinder,CRT,PILER-CR	309836-309867	32	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	309836-309867	0	1.0
NZ_CP039853_2	2.18\|309896\|32\|NZ_CP039853\|CRISPRCasFinder,CRT,PILER-CR	309896-309927	32	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	309896-309927	0	1.0
NZ_CP039853_2	2.19\|309956\|32\|NZ_CP039853\|CRISPRCasFinder,CRT,PILER-CR	309956-309987	32	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	309956-309987	0	1.0
NZ_CP039853_2	2.20\|310016\|32\|NZ_CP039853\|CRISPRCasFinder,CRT,PILER-CR	310016-310047	32	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	310016-310047	0	1.0
NZ_CP039853_2	2.21\|310076\|32\|NZ_CP039853\|CRISPRCasFinder,CRT,PILER-CR	310076-310107	32	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	310076-310107	0	1.0
NZ_CP039853_2	2.22\|310136\|32\|NZ_CP039853\|CRISPRCasFinder,CRT,PILER-CR	310136-310167	32	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	310136-310167	0	1.0
NZ_CP039853_2	2.1\|308876\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	308876-308907	32	NZ_CP046575	Rhodococcus sp. WAY2 plasmid pRWAY03, complete sequence	42657-42688	6	0.812
NZ_CP039853_2	2.1\|308876\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	308876-308907	32	MT952844	Gordonia phage Bosnia, complete genome	50689-50720	7	0.781
NZ_CP039853_2	2.10\|309416\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	309416-309447	32	MG869620	Polaromonas sp. H6N plasmid pH6NP1, complete sequence	7915-7946	7	0.781
NZ_CP039853_2	2.10\|309416\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	309416-309447	32	NZ_CP019309	Phaeobacter inhibens strain DOK1-1 plasmid pDOK1-1-2, complete sequence	4612-4643	7	0.781
NZ_CP039853_2	2.13\|309596\|32\|NZ_CP039853\|CRISPRCasFinder,CRT,PILER-CR	309596-309627	32	NZ_CP045411	Roseovarius sp. THAF8 plasmid pTHAF8_a, complete sequence	165345-165376	7	0.781
NZ_CP039853_2	2.13\|309596\|32\|NZ_CP039853\|CRISPRCasFinder,CRT,PILER-CR	309596-309627	32	NZ_CP045394	Roseovarius sp. THAF27 plasmid pTHAF27_a, complete sequence	166632-166663	7	0.781
NZ_CP039853_2	2.13\|309596\|32\|NZ_CP039853\|CRISPRCasFinder,CRT,PILER-CR	309596-309627	32	NZ_CP045405	Roseovarius sp. THAF9 plasmid pTHAF9_a, complete sequence	161035-161066	7	0.781
NZ_CP039853_2	2.20\|310016\|32\|NZ_CP039853\|CRISPRCasFinder,CRT,PILER-CR	310016-310047	32	NZ_CP013333	Fusobacterium hwasookii ChDC F174 plasmid unnamed2, complete sequence	795-826	7	0.781
NZ_CP039853_2	2.6\|309176\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	309176-309207	32	CP017041	Propionibacterium sp. oral taxon 193 strain F0672 plasmid unnamed1, complete sequence	27827-27858	8	0.75
NZ_CP039853_2	2.6\|309176\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	309176-309207	32	MT178275	Klebsiella virus KpS8, complete genome	38357-38388	8	0.75
NZ_CP039853_2	2.6\|309176\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	309176-309207	32	MT939253	Klebsiella phage vB_KpnM_Seu621, complete genome	38320-38351	8	0.75
NZ_CP039853_2	2.6\|309176\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	309176-309207	32	NC_048656	Klebsiella phage vB_KpnM_BIS47, complete genome	21206-21237	8	0.75
NZ_CP039853_2	2.8\|309296\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	309296-309327	32	NZ_CP013506	Rhizobium sp. N1341 plasmid pRspN1341a, complete sequence	78120-78151	8	0.75
NZ_CP039853_2	2.8\|309296\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	309296-309327	32	NZ_CP013569	Rhizobium phaseoli strain N771 plasmid pRphaN771a, complete sequence	94129-94160	8	0.75
NZ_CP039853_2	2.8\|309296\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	309296-309327	32	MN043730	Bacillus phage vB_BveM-Goe7, complete genome	136954-136985	8	0.75
NZ_CP039853_2	2.8\|309296\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	309296-309327	32	MN856075	Bacteriophage sp. isolate 378, complete genome	82-113	8	0.75
NZ_CP039853_2	2.13\|309596\|32\|NZ_CP039853\|CRISPRCasFinder,CRT,PILER-CR	309596-309627	32	NC_019789	Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE01, complete sequence	42549-42580	8	0.75
NZ_CP039853_2	2.20\|310016\|32\|NZ_CP039853\|CRISPRCasFinder,CRT,PILER-CR	310016-310047	32	MN694560	Marine virus AFVG_250M172, complete genome	44927-44958	8	0.75
NZ_CP039853_2	2.2\|308936\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	308936-308967	32	NZ_CP028919	Gemmobacter sp. HYN0069 plasmid unnamed1, complete sequence	192455-192486	9	0.719
NZ_CP039853_2	2.8\|309296\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	309296-309327	32	NC_021856	Bacillus phage phiNIT1 DNA, complete genome	138852-138883	9	0.719
NZ_CP039853_2	2.10\|309416\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	309416-309447	32	KC701493	Mycobacterium phage CASbig, complete genome	627-658	9	0.719
NZ_CP039853_2	2.10\|309416\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	309416-309447	32	MH697579	Mycobacterium phage Cane17, complete genome	27381-27412	9	0.719
NZ_CP039853_2	2.10\|309416\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	309416-309447	32	MK359358	Mycobacterium phage Essence, complete genome	29709-29740	9	0.719
NZ_CP039853_2	2.10\|309416\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	309416-309447	32	KX831080	Mycobacterium phage Lukilu, complete genome	30169-30200	9	0.719
NZ_CP039853_2	2.10\|309416\|32\|NZ_CP039853\|CRISPRCasFinder,CRT	309416-309447	32	MK359359	Mycobacterium phage Colt, complete genome	28443-28474	9	0.719
NZ_CP039853_2	2.13\|309596\|32\|NZ_CP039853\|CRISPRCasFinder,CRT,PILER-CR	309596-309627	32	NZ_CP021356	Rhodococcus sp. S2-17 plasmid pRB29, complete sequence	182360-182391	9	0.719
NZ_CP039853_2	2.20\|310016\|32\|NZ_CP039853\|CRISPRCasFinder,CRT,PILER-CR	310016-310047	32	MN694560	Marine virus AFVG_250M172, complete genome	751-782	9	0.719
NZ_CP039853_2	2.20\|310016\|32\|NZ_CP039853\|CRISPRCasFinder,CRT,PILER-CR	310016-310047	32	NZ_AP017918	Candidatus Azobacteroides pseudotrichonymphae plasmid pAPPJ4 DNA, complete sequence, phylotype ProJPt-1	13964-13995	9	0.719
NZ_CP039853_2	2.20\|310016\|32\|NZ_CP039853\|CRISPRCasFinder,CRT,PILER-CR	310016-310047	32	MN698242	Pelagibacter phage HTVC103P, complete genome	4735-4766	9	0.719
NZ_CP039853_2	2.21\|310076\|32\|NZ_CP039853\|CRISPRCasFinder,CRT,PILER-CR	310076-310107	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	321917-321948	9	0.719
NZ_CP039853_2	2.21\|310076\|32\|NZ_CP039853\|CRISPRCasFinder,CRT,PILER-CR	310076-310107	32	NZ_CP020521	Escherichia coli strain 190 plasmid unnamed4, complete sequence	7699-7730	9	0.719
NZ_CP039853_2	2.21\|310076\|32\|NZ_CP039853\|CRISPRCasFinder,CRT,PILER-CR	310076-310107	32	MN445185	Escherichia phage vB_EcoM_EC001, complete genome	187005-187036	9	0.719
NZ_CP039853_2	2.21\|310076\|32\|NZ_CP039853\|CRISPRCasFinder,CRT,PILER-CR	310076-310107	32	KU726251	Enterobacteria phage SEGD1, complete genome	186188-186219	9	0.719
NZ_CP039853_2	2.21\|310076\|32\|NZ_CP039853\|CRISPRCasFinder,CRT,PILER-CR	310076-310107	32	MT679221	Proteus phage 7, complete genome	188320-188351	9	0.719
NZ_CP039853_2	2.21\|310076\|32\|NZ_CP039853\|CRISPRCasFinder,CRT,PILER-CR	310076-310107	32	NC_027402	Salmonella phage SPN3US, complete genome	187445-187476	9	0.719
NZ_CP039853_2	2.21\|310076\|32\|NZ_CP039853\|CRISPRCasFinder,CRT,PILER-CR	310076-310107	32	MT799840	Salmonella phage JN03, complete genome	187834-187865	9	0.719
NZ_CP039853_2	2.13\|309596\|32\|NZ_CP039853\|CRISPRCasFinder,CRT,PILER-CR	309596-309627	32	NC_011143	Phenylobacterium zucineum HLK1 plasmid, complete sequence	48150-48181	10	0.688

1. spacer 1.1|297569|54|NZ_CP039853|PILER-CR matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 0, identity: 1.0

gcacatgtgttttaagttctgaaatagccgatttcaaaacgccatagatacatc	CRISPR spacer
gcacatgtgttttaagttctgaaatagccgatttcaaaacgccatagatacatc	Protospacer
******************************************************

2. spacer 1.2|297643|53|NZ_CP039853|PILER-CR matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 0, identity: 1.0

tcgatgctaaattaagcgtcccttcctttccttaaagacgccaaacagcattt	CRISPR spacer
tcgatgctaaattaagcgtcccttcctttccttaaagacgccaaacagcattt	Protospacer
*****************************************************

3. spacer 2.1|308876|32|NZ_CP039853|CRISPRCasFinder,CRT matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 0, identity: 1.0

ggcgggcgttggtgtgccgggccgggtgattt	CRISPR spacer
ggcgggcgttggtgtgccgggccgggtgattt	Protospacer
********************************

4. spacer 2.2|308936|32|NZ_CP039853|CRISPRCasFinder,CRT matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 0, identity: 1.0

ttttcaaaccagccccggatcttgatttcgtc	CRISPR spacer
ttttcaaaccagccccggatcttgatttcgtc	Protospacer
********************************

5. spacer 2.3|308996|32|NZ_CP039853|CRISPRCasFinder,CRT matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 0, identity: 1.0

tcgctacagaaaaagcgatcaccatccatagt	CRISPR spacer
tcgctacagaaaaagcgatcaccatccatagt	Protospacer
********************************

6. spacer 2.4|309056|32|NZ_CP039853|CRISPRCasFinder,CRT matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 0, identity: 1.0

gtagccgcagagggcgcgcaactttccttgca	CRISPR spacer
gtagccgcagagggcgcgcaactttccttgca	Protospacer
********************************

7. spacer 2.5|309116|32|NZ_CP039853|CRISPRCasFinder,CRT matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 0, identity: 1.0

cgggctttgtcgttaatgttaaatggttacca	CRISPR spacer
cgggctttgtcgttaatgttaaatggttacca	Protospacer
********************************

8. spacer 2.6|309176|32|NZ_CP039853|CRISPRCasFinder,CRT matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctacgtgtggggcgcgaatggtgcaacca	CRISPR spacer
gcgctacgtgtggggcgcgaatggtgcaacca	Protospacer
********************************

9. spacer 2.7|309236|32|NZ_CP039853|CRISPRCasFinder,CRT matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 0, identity: 1.0

cgctcagcctggaacgggtacggatacgtcga	CRISPR spacer
cgctcagcctggaacgggtacggatacgtcga	Protospacer
********************************

10. spacer 2.8|309296|32|NZ_CP039853|CRISPRCasFinder,CRT matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 0, identity: 1.0

tttacctcatcttcgctcatgccatctttata	CRISPR spacer
tttacctcatcttcgctcatgccatctttata	Protospacer
********************************

11. spacer 2.9|309356|32|NZ_CP039853|CRISPRCasFinder,CRT matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 0, identity: 1.0

gacggcttacacgcatcagccgaaaatttata	CRISPR spacer
gacggcttacacgcatcagccgaaaatttata	Protospacer
********************************

12. spacer 2.10|309416|32|NZ_CP039853|CRISPRCasFinder,CRT matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 0, identity: 1.0

cgacacggtgcgccggttctggatgcgtccac	CRISPR spacer
cgacacggtgcgccggttctggatgcgtccac	Protospacer
********************************

13. spacer 2.11|309476|32|NZ_CP039853|CRISPRCasFinder,CRT matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 0, identity: 1.0

ttgagcgtcagattctcgttaaatacgatgat	CRISPR spacer
ttgagcgtcagattctcgttaaatacgatgat	Protospacer
********************************

14. spacer 2.12|309536|32|NZ_CP039853|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 0, identity: 1.0

ccggatggctcccttttaaaccattacgtgct	CRISPR spacer
ccggatggctcccttttaaaccattacgtgct	Protospacer
********************************

15. spacer 2.13|309596|32|NZ_CP039853|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaacccgtgcgcctggtgtcgggcgggtc	CRISPR spacer
ggtaaacccgtgcgcctggtgtcgggcgggtc	Protospacer
********************************

16. spacer 2.14|309656|32|NZ_CP039853|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 0, identity: 1.0

aacaatcatgtcagctggctcaaggccgttaa	CRISPR spacer
aacaatcatgtcagctggctcaaggccgttaa	Protospacer
********************************

17. spacer 2.15|309716|32|NZ_CP039853|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 0, identity: 1.0

taactatcttcaatggaattatcagactcatc	CRISPR spacer
taactatcttcaatggaattatcagactcatc	Protospacer
********************************

18. spacer 2.16|309776|32|NZ_CP039853|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 0, identity: 1.0

gctatttccacctgttgcatgattgcttgtaa	CRISPR spacer
gctatttccacctgttgcatgattgcttgtaa	Protospacer
********************************

19. spacer 2.17|309836|32|NZ_CP039853|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 0, identity: 1.0

ttcctcagcctgctgcttttgtgagccggtca	CRISPR spacer
ttcctcagcctgctgcttttgtgagccggtca	Protospacer
********************************

20. spacer 2.18|309896|32|NZ_CP039853|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 0, identity: 1.0

ccagggtaatatcatcaaagctggcatcttta	CRISPR spacer
ccagggtaatatcatcaaagctggcatcttta	Protospacer
********************************

21. spacer 2.19|309956|32|NZ_CP039853|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 0, identity: 1.0

tcaggtgcgccctttgttttgcattgcctgca	CRISPR spacer
tcaggtgcgccctttgttttgcattgcctgca	Protospacer
********************************

22. spacer 2.20|310016|32|NZ_CP039853|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 0, identity: 1.0

tttttttactccctttgtttattaacgaacaa	CRISPR spacer
tttttttactccctttgtttattaacgaacaa	Protospacer
********************************

23. spacer 2.21|310076|32|NZ_CP039853|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 0, identity: 1.0

gtatctttgttgtgagccggtaaaggctttca	CRISPR spacer
gtatctttgttgtgagccggtaaaggctttca	Protospacer
********************************

24. spacer 2.22|310136|32|NZ_CP039853|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 0, identity: 1.0

acaggggaatttcaatgaactgggcggatata	CRISPR spacer
acaggggaatttcaatgaactgggcggatata	Protospacer
********************************

25. spacer 2.1|308876|32|NZ_CP039853|CRISPRCasFinder,CRT matches to NZ_CP046575 (Rhodococcus sp. WAY2 plasmid pRWAY03, complete sequence) position: , mismatch: 6, identity: 0.812

ggcgggcgttggtgtgccgggcc--gggtgattt	CRISPR spacer
ggcgggcgttgttgtgccgcgcccgcggcgat--	Protospacer
*********** ******* ***   **.***

26. spacer 2.1|308876|32|NZ_CP039853|CRISPRCasFinder,CRT matches to MT952844 (Gordonia phage Bosnia, complete genome) position: , mismatch: 7, identity: 0.781

ggcgggcgttggtgtgccgggccgggtgattt	CRISPR spacer
ggcgggccttggtgtgccggtccggtcgctgg	Protospacer
******* ************ **** .* *

27. spacer 2.10|309416|32|NZ_CP039853|CRISPRCasFinder,CRT matches to MG869620 (Polaromonas sp. H6N plasmid pH6NP1, complete sequence) position: , mismatch: 7, identity: 0.781

cgacacggtgcgccggttctggatgcgtccac	CRISPR spacer
cgaaacggtgcgccgtttctggacctgcccgc	Protospacer
*** *********** *******. .*.**.*

28. spacer 2.10|309416|32|NZ_CP039853|CRISPRCasFinder,CRT matches to NZ_CP019309 (Phaeobacter inhibens strain DOK1-1 plasmid pDOK1-1-2, complete sequence) position: , mismatch: 7, identity: 0.781

cgacacggtgcgccggttctgg---atgcgtccac	CRISPR spacer
cgaaacgctgcgccggttctggactatgcttt---	Protospacer
*** *** **************   **** *.

29. spacer 2.13|309596|32|NZ_CP039853|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045411 (Roseovarius sp. THAF8 plasmid pTHAF8_a, complete sequence) position: , mismatch: 7, identity: 0.781

---ggtaaacccgtgcgcctggtgtcgggcgggtc	CRISPR spacer
tggggta---tggtgcgcctggtgtcggggcggtc	Protospacer
   ****   . *****************  ****

30. spacer 2.13|309596|32|NZ_CP039853|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045394 (Roseovarius sp. THAF27 plasmid pTHAF27_a, complete sequence) position: , mismatch: 7, identity: 0.781

---ggtaaacccgtgcgcctggtgtcgggcgggtc	CRISPR spacer
tggggta---tggtgcgcctggtgtcggggcggtc	Protospacer
   ****   . *****************  ****

31. spacer 2.13|309596|32|NZ_CP039853|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045405 (Roseovarius sp. THAF9 plasmid pTHAF9_a, complete sequence) position: , mismatch: 7, identity: 0.781

---ggtaaacccgtgcgcctggtgtcgggcgggtc	CRISPR spacer
tggggta---tggtgcgcctggtgtcggggcggtc	Protospacer
   ****   . *****************  ****

32. spacer 2.20|310016|32|NZ_CP039853|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013333 (Fusobacterium hwasookii ChDC F174 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

tttttttactccctttgtttattaacgaacaa	CRISPR spacer
tttttttactccctttttttattcattataac	Protospacer
**************** ****** *. *  *

33. spacer 2.6|309176|32|NZ_CP039853|CRISPRCasFinder,CRT matches to CP017041 (Propionibacterium sp. oral taxon 193 strain F0672 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gcgctacgtgtggggcgcgaatggtgcaacca	CRISPR spacer
cacctacgtgtggggcggtaatggtgcgagcg	Protospacer
   **************  ********.* *.

34. spacer 2.6|309176|32|NZ_CP039853|CRISPRCasFinder,CRT matches to MT178275 (Klebsiella virus KpS8, complete genome) position: , mismatch: 8, identity: 0.75

gcgctacgtgtggggcgcgaatggtgcaacca	CRISPR spacer
tccctacgcgtggggcgcgagtggtggttccg	Protospacer
 * *****.***********.*****   **.

35. spacer 2.6|309176|32|NZ_CP039853|CRISPRCasFinder,CRT matches to MT939253 (Klebsiella phage vB_KpnM_Seu621, complete genome) position: , mismatch: 8, identity: 0.75

gcgctacgtgtggggcgcgaatggtgcaacca	CRISPR spacer
tccctacgcgtggggcgcgagtggtggttccg	Protospacer
 * *****.***********.*****   **.

36. spacer 2.6|309176|32|NZ_CP039853|CRISPRCasFinder,CRT matches to NC_048656 (Klebsiella phage vB_KpnM_BIS47, complete genome) position: , mismatch: 8, identity: 0.75

gcgctacgtgtggggcgcgaatggtgcaacca	CRISPR spacer
tccctacgcgtggggcgcgagtggtggttccg	Protospacer
 * *****.***********.*****   **.

37. spacer 2.8|309296|32|NZ_CP039853|CRISPRCasFinder,CRT matches to NZ_CP013506 (Rhizobium sp. N1341 plasmid pRspN1341a, complete sequence) position: , mismatch: 8, identity: 0.75

tttacctcatcttcgctcatgccatctttata-	CRISPR spacer
gcgacgtcatcttcgctcatgcgatc-cgatac	Protospacer
 . ** **************** *** . ***

38. spacer 2.8|309296|32|NZ_CP039853|CRISPRCasFinder,CRT matches to NZ_CP013569 (Rhizobium phaseoli strain N771 plasmid pRphaN771a, complete sequence) position: , mismatch: 8, identity: 0.75

tttacctcatcttcgctcatgccatctttata-	CRISPR spacer
gcgacgtcatcttcgctcatgcgatc-cgatac	Protospacer
 . ** **************** *** . ***

39. spacer 2.8|309296|32|NZ_CP039853|CRISPRCasFinder,CRT matches to MN043730 (Bacillus phage vB_BveM-Goe7, complete genome) position: , mismatch: 8, identity: 0.75

tttacctcatcttcgctcatgccatctttata	CRISPR spacer
actgcctcttcttcggtcatgccatctctctt	Protospacer
 .*.**** ****** ***********.* *

40. spacer 2.8|309296|32|NZ_CP039853|CRISPRCasFinder,CRT matches to MN856075 (Bacteriophage sp. isolate 378, complete genome) position: , mismatch: 8, identity: 0.75

tttacctcatcttcgctcatgccatctttata---	CRISPR spacer
gttgcgtcatcttcgctcatgcca---aaatacat	Protospacer
 **.* ******************     ***

41. spacer 2.13|309596|32|NZ_CP039853|CRISPRCasFinder,CRT,PILER-CR matches to NC_019789 (Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE01, complete sequence) position: , mismatch: 8, identity: 0.75

ggtaaacccgtgcgcctggtgtcgggcgggtc	CRISPR spacer
ggcgtacccgcgcgcctggtgtggggcgccgc	Protospacer
**.. *****.*********** *****   *

42. spacer 2.20|310016|32|NZ_CP039853|CRISPRCasFinder,CRT,PILER-CR matches to MN694560 (Marine virus AFVG_250M172, complete genome) position: , mismatch: 8, identity: 0.75

tttttttactccctttgtttattaacgaacaa	CRISPR spacer
tgtttttacttcctttatttattaagggggac	Protospacer
* ********.*****.******** *.. *

43. spacer 2.2|308936|32|NZ_CP039853|CRISPRCasFinder,CRT matches to NZ_CP028919 (Gemmobacter sp. HYN0069 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ttttcaaaccagccccggatcttgatttcgtc	CRISPR spacer
ctggcaaaccagccccggatcgtgactttccg	Protospacer
.*  ***************** ***.**. .

44. spacer 2.8|309296|32|NZ_CP039853|CRISPRCasFinder,CRT matches to NC_021856 (Bacillus phage phiNIT1 DNA, complete genome) position: , mismatch: 9, identity: 0.719

tttacctcatcttcgctcatgccatctttata	CRISPR spacer
actgcctcttcttcggtcatgccatctcttct	Protospacer
 .*.**** ****** ***********.* .

45. spacer 2.10|309416|32|NZ_CP039853|CRISPRCasFinder,CRT matches to KC701493 (Mycobacterium phage CASbig, complete genome) position: , mismatch: 9, identity: 0.719

cgacacggtgcgccggttctggatgcgtccac	CRISPR spacer
ggacgtggtgcgccggttctggatgtcggatc	Protospacer
 ***..*******************.     *

46. spacer 2.10|309416|32|NZ_CP039853|CRISPRCasFinder,CRT matches to MH697579 (Mycobacterium phage Cane17, complete genome) position: , mismatch: 9, identity: 0.719

cgacacggtgcgccggttctgga-----tgcgtccac	CRISPR spacer
cgacgcggtgcgccgggtctggagctggaacg-----	Protospacer
****.*********** ******      .**

47. spacer 2.10|309416|32|NZ_CP039853|CRISPRCasFinder,CRT matches to MK359358 (Mycobacterium phage Essence, complete genome) position: , mismatch: 9, identity: 0.719

cgacacggtgcgccggttctgga-----tgcgtccac	CRISPR spacer
cgacgcggtgcgccgggtctggagctggaacg-----	Protospacer
****.*********** ******      .**

48. spacer 2.10|309416|32|NZ_CP039853|CRISPRCasFinder,CRT matches to KX831080 (Mycobacterium phage Lukilu, complete genome) position: , mismatch: 9, identity: 0.719

cgacacggtgcgccggttctgga-----tgcgtccac	CRISPR spacer
cgacgcggtgcgccgggtctggagctggaacg-----	Protospacer
****.*********** ******      .**

49. spacer 2.10|309416|32|NZ_CP039853|CRISPRCasFinder,CRT matches to MK359359 (Mycobacterium phage Colt, complete genome) position: , mismatch: 9, identity: 0.719

cgacacggtgcgccggttctgga-----tgcgtccac	CRISPR spacer
cgacgcggtgcgccgggtctggagctggaacg-----	Protospacer
****.*********** ******      .**

50. spacer 2.13|309596|32|NZ_CP039853|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021356 (Rhodococcus sp. S2-17 plasmid pRB29, complete sequence) position: , mismatch: 9, identity: 0.719

ggtaaacccgtgcgcctggtgtcgggcgggtc	CRISPR spacer
atctcgcacgtgtgcctggtgtcgggcgggtt	Protospacer
. .  .* ****.******************.

51. spacer 2.20|310016|32|NZ_CP039853|CRISPRCasFinder,CRT,PILER-CR matches to MN694560 (Marine virus AFVG_250M172, complete genome) position: , mismatch: 9, identity: 0.719

tttttttactccctttgtttattaacgaacaa	CRISPR spacer
gttttttacttcctttatttattaaggggact	Protospacer
 *********.*****.******** *..

52. spacer 2.20|310016|32|NZ_CP039853|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP017918 (Candidatus Azobacteroides pseudotrichonymphae plasmid pAPPJ4 DNA, complete sequence, phylotype ProJPt-1) position: , mismatch: 9, identity: 0.719

tttttttactccctttgtttattaacgaacaa	CRISPR spacer
attttttacttcctttttttattataaaatct	Protospacer
 *********.***** *******  .**.

53. spacer 2.20|310016|32|NZ_CP039853|CRISPRCasFinder,CRT,PILER-CR matches to MN698242 (Pelagibacter phage HTVC103P, complete genome) position: , mismatch: 9, identity: 0.719

tttttttactccctttgtttattaacgaacaa	CRISPR spacer
catttttactccttttgttttttaaaaactta	Protospacer
. **********.******* **** .* . *

54. spacer 2.21|310076|32|NZ_CP039853|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 9, identity: 0.719

gtatctttgttgtgagccggtaaaggctttca-----	CRISPR spacer
gtatctttgttgtgagcagttaaa-----ccgataat	Protospacer
***************** * ****     .*.

55. spacer 2.21|310076|32|NZ_CP039853|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020521 (Escherichia coli strain 190 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

gtatctttgttgtgagccggtaaaggctttca	CRISPR spacer
gaagtcttgttgtgagcctgcaaaggcttctg	Protospacer
* * ..************ *.********...

56. spacer 2.21|310076|32|NZ_CP039853|CRISPRCasFinder,CRT,PILER-CR matches to MN445185 (Escherichia phage vB_EcoM_EC001, complete genome) position: , mismatch: 9, identity: 0.719

gtatctttgttgtgagccggtaaaggctttca	CRISPR spacer
gagttcctgttgagagccgctaaaggctttag	Protospacer
* .*...***** ****** ********** .

57. spacer 2.21|310076|32|NZ_CP039853|CRISPRCasFinder,CRT,PILER-CR matches to KU726251 (Enterobacteria phage SEGD1, complete genome) position: , mismatch: 9, identity: 0.719

gtatctttgttgtgagccggtaaaggctttca	CRISPR spacer
gagttcctgttgagagccgctaaaggctttag	Protospacer
* .*...***** ****** ********** .

58. spacer 2.21|310076|32|NZ_CP039853|CRISPRCasFinder,CRT,PILER-CR matches to MT679221 (Proteus phage 7, complete genome) position: , mismatch: 9, identity: 0.719

gtatctttgttgtgagccggtaaaggctttca	CRISPR spacer
gagttcctgttgagagccgctaaaggctttag	Protospacer
* .*...***** ****** ********** .

59. spacer 2.21|310076|32|NZ_CP039853|CRISPRCasFinder,CRT,PILER-CR matches to NC_027402 (Salmonella phage SPN3US, complete genome) position: , mismatch: 9, identity: 0.719

gtatctttgttgtgagccggtaaaggctttca	CRISPR spacer
gagttcctgttgagagccgctaaaggctttag	Protospacer
* .*...***** ****** ********** .

60. spacer 2.21|310076|32|NZ_CP039853|CRISPRCasFinder,CRT,PILER-CR matches to MT799840 (Salmonella phage JN03, complete genome) position: , mismatch: 9, identity: 0.719

gtatctttgttgtgagccggtaaaggctttca	CRISPR spacer
gagttcctgttgagagccgctaaaggctttag	Protospacer
* .*...***** ****** ********** .

61. spacer 2.13|309596|32|NZ_CP039853|CRISPRCasFinder,CRT,PILER-CR matches to NC_011143 (Phenylobacterium zucineum HLK1 plasmid, complete sequence) position: , mismatch: 10, identity: 0.688

ggtaaacccgtgcgcctggtgtcgggcgggtc	CRISPR spacer
gaggcgcccgagcgcctcgtgtcgggcggcga	Protospacer
*. . .**** ****** ***********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

78595 : 116262

Leptospira_phage(12.5%)

transposase,integrase

attL 83977:84000|attR 122754:122777

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_117316825.1\|78595_78865_+\|transposase	transposase	NA	NA	NA	NA
WP_139758064.1\|78897_79698_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.0e-53	42.9
WP_117316821.1\|79770_80166_-	hypothetical protein	NA	NA	NA	NA
WP_117316818.1\|80276_80807_+	DUF305 domain-containing protein	A0A1V0SJW0	Klosneuvirus	4.0e-06	34.0
WP_139758065.1\|80799_81531_+	glutaredoxin	NA	NA	NA	NA
WP_139758066.1\|81612_82074_-	SnoaL-like domain-containing protein	NA	NA	NA	NA
WP_139758067.1\|82084_82966_-	copper-binding protein	NA	NA	NA	NA
WP_117316811.1\|82975_83329_-	copper resistance protein CopC	NA	NA	NA	NA
WP_139758068.1\|83763_84153_+	hypothetical protein	NA	NA	NA	NA
83977:84000	attL	NA	NA	NA	NA
WP_139758069.1\|84234_86034_+	copper resistance system multicopper oxidase	NA	NA	NA	NA
WP_139758070.1\|86043_86793_+	copper resistance protein B	NA	NA	NA	NA
WP_139758071.1\|86951_88277_+	amino acid permease	NA	NA	NA	NA
WP_168190725.1\|88862_89024_-	hypothetical protein	NA	NA	NA	NA
WP_139758269.1\|89106_89370_-	hypothetical protein	NA	NA	NA	NA
WP_139758072.1\|89434_89806_-	cation transporter	NA	NA	NA	NA
WP_117316795.1\|89798_90233_-	hypothetical protein	NA	NA	NA	NA
WP_139758073.1\|90216_90882_-	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_117316793.1\|90874_91213_-	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_139758074.1\|91209_91575_-	cupredoxin domain-containing protein	NA	NA	NA	NA
WP_139758075.1\|91586_93830_-	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	2.4e-92	33.4
WP_139758076.1\|95256_96207_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	3.8e-39	33.1
WP_139758077.1\|96313_96640_-	hypothetical protein	NA	NA	NA	NA
WP_139758078.1\|96632_98720_-	AAA family ATPase	S5MMD7	Bacillus_phage	3.5e-21	22.8
WP_139758079.1\|98866_99343_+	hypothetical protein	NA	NA	NA	NA
WP_139758080.1\|99339_99630_+	hypothetical protein	NA	NA	NA	NA
WP_139758081.1\|99898_100630_+	hypothetical protein	NA	NA	NA	NA
WP_139758082.1\|100709_101120_-	hypothetical protein	NA	NA	NA	NA
WP_139758083.1\|101243_101765_+	hypothetical protein	NA	NA	NA	NA
WP_139758084.1\|101778_103002_+	DUF1173 family protein	NA	NA	NA	NA
WP_139758085.1\|103027_103597_+	hypothetical protein	NA	NA	NA	NA
WP_139758086.1\|103615_104254_+	hypothetical protein	NA	NA	NA	NA
WP_139758087.1\|104476_105187_+\|integrase	integrase	NA	NA	NA	NA
WP_139758088.1\|105183_105522_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_139758089.1\|105591_105924_+	XRE family transcriptional regulator	A0A1I9L2L2	Xanthomonas_phage	3.4e-11	36.3
WP_139758090.1\|105946_106369_+	DUF2513 domain-containing protein	NA	NA	NA	NA
WP_139758091.1\|106598_109586_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	4.8e-64	23.2
WP_040133153.1\|109702_110269_-	hypothetical protein	NA	NA	NA	NA
WP_040133152.1\|110265_110661_-	hypothetical protein	NA	NA	NA	NA
WP_011711644.1\|110684_111119_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_020833625.1\|111138_111939_-	EAL domain-containing protein	NA	NA	NA	NA
WP_139758092.1\|111950_113618_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	6.2e-37	28.2
WP_139758093.1\|113655_114075_-	organomercurial transporter MerC	NA	NA	NA	NA
WP_007642844.1\|114078_114357_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_007642845.1\|114409_114757_-	mercury transporter	NA	NA	NA	NA
WP_040133151.1\|114850_115237_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_139758094.1\|115239_116262_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
122754:122777	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP039852

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP039853

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection