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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP025551 Streptomyces rimosus strain WT5260 chromosome, complete genome 11 crisprs csa3,RT,cas8e,DEDDh,DinG,WYL,cas3,cas4,casR 0 4 6 0
NZ_CP025552 Streptomyces rimosus strain WT5260 plasmid unnamed, complete sequence 0 crisprs csa3 0 0 1 0

Results visualization

1. NZ_CP025551
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025551_1 982934-983116 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025551_2 1718460-1718608 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025551_3 2657804-2657888 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025551_4 2816207-2816294 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025551_5 4477641-4477742 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025551_6 6144257-6144370 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025551_7 6294393-6294558 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025551_8 6407628-6407814 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025551_9 6431724-6431831 Orphan NA
1 spacers
WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025551_10 6837496-6837595 Orphan NA
1 spacers
WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP025551_11 7645762-7645837 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP025551_7 7.1|6294430|31|NZ_CP025551|PILER-CR 6294430-6294460 31 NC_013596 Streptosporangium roseum DSM 43021 plasmid pSROS01, complete sequence 8525-8555 4 0.871
NZ_CP025551_3 3.1|2657828|37|NZ_CP025551|CRISPRCasFinder 2657828-2657864 37 NZ_LR134465 Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence 334970-335006 6 0.838
NZ_CP025551_9 9.1|6431754|48|NZ_CP025551|CRISPRCasFinder 6431754-6431801 48 NZ_CP018784 Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence 253740-253787 6 0.875
NZ_CP025551_11 11.1|7645785|30|NZ_CP025551|CRISPRCasFinder 7645785-7645814 30 NZ_CP010991 Pseudonocardia sp. EC080625-04 plasmid pFRP1-2, complete sequence 39311-39340 7 0.767
NZ_CP025551_11 11.1|7645785|30|NZ_CP025551|CRISPRCasFinder 7645785-7645814 30 MG945689 UNVERIFIED: Microviridae sp. isolate 1391-18011, complete genome 1175-1204 7 0.767
NZ_CP025551_11 11.1|7645785|30|NZ_CP025551|CRISPRCasFinder 7645785-7645814 30 NZ_CP012186 Pseudonocardia sp. EC080619-01 plasmid pBCI1-1, complete sequence 167002-167031 7 0.767
NZ_CP025551_11 11.1|7645785|30|NZ_CP025551|CRISPRCasFinder 7645785-7645814 30 NZ_CP012163 Enterobacter roggenkampii strain 35734 plasmid p35734-109.753kb, complete sequence 40899-40928 8 0.733
NZ_CP025551_11 11.1|7645785|30|NZ_CP025551|CRISPRCasFinder 7645785-7645814 30 NZ_CP009851 UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH4 plasmid pENT-c88, complete sequence 28228-28257 8 0.733
NZ_CP025551_11 11.1|7645785|30|NZ_CP025551|CRISPRCasFinder 7645785-7645814 30 NZ_CP050081 Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence 310516-310545 8 0.733
NZ_CP025551_11 11.1|7645785|30|NZ_CP025551|CRISPRCasFinder 7645785-7645814 30 NZ_CP049731 Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence 308554-308583 8 0.733
NZ_CP025551_11 11.1|7645785|30|NZ_CP025551|CRISPRCasFinder 7645785-7645814 30 NZ_CP053206 Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence 308886-308915 8 0.733
NZ_CP025551_11 11.1|7645785|30|NZ_CP025551|CRISPRCasFinder 7645785-7645814 30 NC_009339 Mycolicibacterium gilvum PYR-GCK plasmid pMFLV01, complete sequence 10119-10148 8 0.733
NZ_CP025551_11 11.1|7645785|30|NZ_CP025551|CRISPRCasFinder 7645785-7645814 30 NC_012848 Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence 1016-1045 8 0.733
NZ_CP025551_3 3.1|2657828|37|NZ_CP025551|CRISPRCasFinder 2657828-2657864 37 NZ_CP015091 Pelagibaca abyssi strain JLT2014 plasmid pPABY1, complete sequence 75411-75447 9 0.757
NZ_CP025551_9 9.1|6431754|48|NZ_CP025551|CRISPRCasFinder 6431754-6431801 48 KY250482 Corynebacterium phage phi16, complete genome 56101-56148 9 0.812
NZ_CP025551_9 9.1|6431754|48|NZ_CP025551|CRISPRCasFinder 6431754-6431801 48 KF017927 Mycobacterium phage Odin, complete genome 4126-4173 9 0.812
NZ_CP025551_9 9.1|6431754|48|NZ_CP025551|CRISPRCasFinder 6431754-6431801 48 MN284903 Mycobacterium phage GaugeLDP, complete genome 5561-5608 9 0.812
NZ_CP025551_9 9.1|6431754|48|NZ_CP025551|CRISPRCasFinder 6431754-6431801 48 MK359341 Mycobacterium phage GingkoMaracino, complete genome 3702-3749 10 0.792
NZ_CP025551_9 9.1|6431754|48|NZ_CP025551|CRISPRCasFinder 6431754-6431801 48 MH536825 Mycobacterium phage Ollie, complete genome 3702-3749 10 0.792
NZ_CP025551_9 9.1|6431754|48|NZ_CP025551|CRISPRCasFinder 6431754-6431801 48 MN284900 Mycobacterium phage JeppNRM, complete genome 3867-3914 10 0.792
NZ_CP025551_9 9.1|6431754|48|NZ_CP025551|CRISPRCasFinder 6431754-6431801 48 MH450128 Mycobacterium phage Reba, complete genome 3540-3587 10 0.792
NZ_CP025551_9 9.1|6431754|48|NZ_CP025551|CRISPRCasFinder 6431754-6431801 48 MH371121 Mycobacterium phage Phranny, complete genome 3867-3914 10 0.792
NZ_CP025551_9 9.1|6431754|48|NZ_CP025551|CRISPRCasFinder 6431754-6431801 48 KF279418 Mycobacterium phage Anubis, complete genome 3702-3749 10 0.792

1. spacer 7.1|6294430|31|NZ_CP025551|PILER-CR matches to NC_013596 (Streptosporangium roseum DSM 43021 plasmid pSROS01, complete sequence) position: , mismatch: 4, identity: 0.871

gcctcccgtcgggaccgccgcct--cccgatcc	CRISPR spacer
gcctcccgccgggaccgccgcctggcccggt--	Protospacer
********.**************  ****.*  

2. spacer 3.1|2657828|37|NZ_CP025551|CRISPRCasFinder matches to NZ_LR134465 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence) position: , mismatch: 6, identity: 0.838

acgcggtcggcgtgcgcgccgtcgcccaccgcgccga---	CRISPR spacer
acgccgtcggcctgcgcgccgtcgc---cctcgccgaatc	Protospacer
**** ****** *************   ** ******   

3. spacer 9.1|6431754|48|NZ_CP025551|CRISPRCasFinder matches to NZ_CP018784 (Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence) position: , mismatch: 6, identity: 0.875

tcggtcccctgtagctcaattggcagagcattcggctgttaaccggag	CRISPR spacer
ttgatcccctgtagctcaattggcagagcacccggctgttaaccgggc	Protospacer
*.*.**************************..**************. 

4. spacer 11.1|7645785|30|NZ_CP025551|CRISPRCasFinder matches to NZ_CP010991 (Pseudonocardia sp. EC080625-04 plasmid pFRP1-2, complete sequence) position: , mismatch: 7, identity: 0.767

ccaccgacaagcccgccgcaggcgcgtaca	CRISPR spacer
tccccgccaagcccgccgccggcgcgaccg	Protospacer
.* *** ************ ******  *.

5. spacer 11.1|7645785|30|NZ_CP025551|CRISPRCasFinder matches to MG945689 (UNVERIFIED: Microviridae sp. isolate 1391-18011, complete genome) position: , mismatch: 7, identity: 0.767

ccaccgacaagcccgccgcaggcgcgtaca	CRISPR spacer
gcgctgtcaaggccgccgcaggcgcgtagc	Protospacer
 *.*.* **** ****************  

6. spacer 11.1|7645785|30|NZ_CP025551|CRISPRCasFinder matches to NZ_CP012186 (Pseudonocardia sp. EC080619-01 plasmid pBCI1-1, complete sequence) position: , mismatch: 7, identity: 0.767

ccaccgacaagcccgccgcaggcgcgtaca	CRISPR spacer
tccccgccaagcccgccgccggcgcgaccg	Protospacer
.* *** ************ ******  *.

7. spacer 11.1|7645785|30|NZ_CP025551|CRISPRCasFinder matches to NZ_CP012163 (Enterobacter roggenkampii strain 35734 plasmid p35734-109.753kb, complete sequence) position: , mismatch: 8, identity: 0.733

ccaccgacaagcccgccgcaggcgcgtaca	CRISPR spacer
acggcgacaaacccgccgcaggcgcggtgt	Protospacer
 *. ******.***************    

8. spacer 11.1|7645785|30|NZ_CP025551|CRISPRCasFinder matches to NZ_CP009851 (UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH4 plasmid pENT-c88, complete sequence) position: , mismatch: 8, identity: 0.733

ccaccgacaagcccgccgcaggcgcgtaca	CRISPR spacer
acggcgacaaacccgccgcaggcgcggtgt	Protospacer
 *. ******.***************    

9. spacer 11.1|7645785|30|NZ_CP025551|CRISPRCasFinder matches to NZ_CP050081 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence) position: , mismatch: 8, identity: 0.733

ccaccgacaagcccgccgcaggcgcgtaca	CRISPR spacer
gcaccggcaagcccgccccaggcggtctcg	Protospacer
 *****.********** ******  . *.

10. spacer 11.1|7645785|30|NZ_CP025551|CRISPRCasFinder matches to NZ_CP049731 (Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence) position: , mismatch: 8, identity: 0.733

ccaccgacaagcccgccgcaggcgcgtaca	CRISPR spacer
gcaccggcaagcccgccccaggcggtctcg	Protospacer
 *****.********** ******  . *.

11. spacer 11.1|7645785|30|NZ_CP025551|CRISPRCasFinder matches to NZ_CP053206 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence) position: , mismatch: 8, identity: 0.733

ccaccgacaagcccgccgcaggcgcgtaca	CRISPR spacer
gcaccggcaagcccgccccaggcggtctcg	Protospacer
 *****.********** ******  . *.

12. spacer 11.1|7645785|30|NZ_CP025551|CRISPRCasFinder matches to NC_009339 (Mycolicibacterium gilvum PYR-GCK plasmid pMFLV01, complete sequence) position: , mismatch: 8, identity: 0.733

ccaccgacaagcccgccgcaggcgcgtaca	CRISPR spacer
ccaccgacaagaccgccgcagctaccccaa	Protospacer
*********** ********* ..* .  *

13. spacer 11.1|7645785|30|NZ_CP025551|CRISPRCasFinder matches to NC_012848 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence) position: , mismatch: 8, identity: 0.733

ccaccgacaagcccgccgcaggcgcgtaca	CRISPR spacer
gcaccggcaagcccgccccaggcggtctcg	Protospacer
 *****.********** ******  . *.

14. spacer 3.1|2657828|37|NZ_CP025551|CRISPRCasFinder matches to NZ_CP015091 (Pelagibaca abyssi strain JLT2014 plasmid pPABY1, complete sequence) position: , mismatch: 9, identity: 0.757

---acgcggtcggcgtgcgcgccgtcgcccaccgcgccga	CRISPR spacer
gaggcgagatcga---gcgcgccgtcgcccaccgcgtcgt	Protospacer
   .** *.***.   ********************.** 

15. spacer 9.1|6431754|48|NZ_CP025551|CRISPRCasFinder matches to KY250482 (Corynebacterium phage phi16, complete genome) position: , mismatch: 9, identity: 0.812

---tcggtcccctgtagctcaattggcagagcattcggctgttaaccggag	CRISPR spacer
caattgatcat---tagctcaattggcagagcatccggctgttaaccggac	Protospacer
   *.*.** .   ********************.*************** 

16. spacer 9.1|6431754|48|NZ_CP025551|CRISPRCasFinder matches to KF017927 (Mycobacterium phage Odin, complete genome) position: , mismatch: 9, identity: 0.812

tcggtcccctgtagctcaattggcagagcattcggctgttaaccggag	CRISPR spacer
ccaatgacgtgtagctcaattggcagagcacccggctgttaaccggac	Protospacer
.*..*  * *********************..*************** 

17. spacer 9.1|6431754|48|NZ_CP025551|CRISPRCasFinder matches to MN284903 (Mycobacterium phage GaugeLDP, complete genome) position: , mismatch: 9, identity: 0.812

tcggtcccctgtagctcaattggcagagcattcggctgttaaccggag	CRISPR spacer
ccactgacgtgtagctcaatcggcagagcatccggctgttaaccggac	Protospacer
.*. *  * ***********.**********.*************** 

18. spacer 9.1|6431754|48|NZ_CP025551|CRISPRCasFinder matches to MK359341 (Mycobacterium phage GingkoMaracino, complete genome) position: , mismatch: 10, identity: 0.792

tcggtcccctgtagctcaattggcagagcattcggctgttaaccggag	CRISPR spacer
ccactgacgtgtagctcaattggcagagcacccggctgttaaccgggc	Protospacer
.*. *  * *********************..**************. 

19. spacer 9.1|6431754|48|NZ_CP025551|CRISPRCasFinder matches to MH536825 (Mycobacterium phage Ollie, complete genome) position: , mismatch: 10, identity: 0.792

tcggtcccctgtagctcaattggcagagcattcggctgttaaccggag	CRISPR spacer
ccactgacgtgtagctcaattggcagagcacccggctgttaaccgggc	Protospacer
.*. *  * *********************..**************. 

20. spacer 9.1|6431754|48|NZ_CP025551|CRISPRCasFinder matches to MN284900 (Mycobacterium phage JeppNRM, complete genome) position: , mismatch: 10, identity: 0.792

tcggtcccctgtagctcaattggcagagcattcggctgttaaccggag	CRISPR spacer
ccattgacgtgtagctcaattggcagagcacccggctgttaaccgggc	Protospacer
.*. *  * *********************..**************. 

21. spacer 9.1|6431754|48|NZ_CP025551|CRISPRCasFinder matches to MH450128 (Mycobacterium phage Reba, complete genome) position: , mismatch: 10, identity: 0.792

tcggtcccctgtagctcaattggcagagcattcggctgttaaccggag	CRISPR spacer
ccattgacgtgtagctcaattggcagagcacccggctgttaaccgggc	Protospacer
.*. *  * *********************..**************. 

22. spacer 9.1|6431754|48|NZ_CP025551|CRISPRCasFinder matches to MH371121 (Mycobacterium phage Phranny, complete genome) position: , mismatch: 10, identity: 0.792

tcggtcccctgtagctcaattggcagagcattcggctgttaaccggag	CRISPR spacer
ccattgacgtgtagctcaattggcagagcacccggctgttaaccgggc	Protospacer
.*. *  * *********************..**************. 

23. spacer 9.1|6431754|48|NZ_CP025551|CRISPRCasFinder matches to KF279418 (Mycobacterium phage Anubis, complete genome) position: , mismatch: 10, identity: 0.792

tcggtcccctgtagctcaattggcagagcattcggctgttaaccggag	CRISPR spacer
ccactgacgtgtagctcaattggcagagcacccggctgttaaccgggc	Protospacer
.*. *  * *********************..**************. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 822099 : 891097 52 Salisaeta_icosahedral_phage(16.67%) tail,protease,transposase NA
DBSCAN-SWA_2 1782945 : 1789242 7 Caulobacter_phage(16.67%) NA NA
DBSCAN-SWA_3 5402689 : 5408167 6 Mycobacterium_phage(33.33%) NA NA
DBSCAN-SWA_4 5425254 : 5466861 44 Streptomyces_phage(41.18%) portal,protease,terminase,transposase,capsid,head NA
DBSCAN-SWA_5 6663141 : 6670242 9 Streptomyces_phage(83.33%) portal,capsid NA
DBSCAN-SWA_6 6687107 : 6694815 15 Gordonia_phage(42.86%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP025552
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 140393 : 262467 93 Spiroplasma_virus(20.0%) tail,integrase,transposase attL 180496:180511|attR 255313:255330
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage