CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP037865	Pasteurella multocida subsp. multocida strain HN02 chromosome, complete genome	1 crisprs	c2c9_V-U4,cas3,DEDDh,DinG,cas8f,cas10,csa3,cas14j	0	3	10	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP037865_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP037865_1

1641964-1642109

Orphan

I-F

Consensus_repeat	Method
TCTAAGCTGCCTATACGGCAGTTAA	CRISPRCasFinder
TGGCTCTCTAAGCTGCCTATACGGCAGTTAAC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP037865_1

>merge|NZ_CP037865|1|1641964-1642109|CRISPRCasFinder,PILER-CR
TTGAAACTGCCTATACGGCAGTTAACCGTGGCTTTACTGTATCCTGCTTTAATTTGGCTCTCTAAGCTGCCTATACGGCAGTTAACTTTGTTGACATTGAAAACAATTCACCGGTGGTTTTCTAAGCTGCCTATACGGCAGTTAAG

>NZ_CP037865|1|1|1641964-1642108|CRISPRCasFinder
TTGAAACTGCCTATACGGCAGTTAA	CCGTGGCTTTACTGTATCCTGCTTTAATTTGGCTC
TCTAAGCTGCCTATACGGCAGTTAA	CTTTGTTGACATTGAAAACAATTCACCGGTGGTTT
TCTAAGCTGCCTATACGGCAGTTAA

>NZ_CP037865|1|1|1641967-1642109|PILER-CR
AAACTGCCTATACGGCAGTTAACCGTGGCTTT	ACTGTATCCTGCTTTAATTTGGCTCTCT
AAGCTGCCTATACGGCAGTTAACTTTGTTGAC	ATTGAAAACAATTCACCGGTGGTTTTCT
AAGCTGCCTATACGGCAGTTAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP037865.1\|WP_005724902.1\|1633406_1634018_-\|high-frequency-lysogenization-protein-HflD	unknown	unknown	gnl\|CDD\|225467
NZ_CP037865.1\|WP_005719267.1\|1630064_1631651_-\|L-lactate-permease	unknown	unknown	gnl\|CDD\|224535
NZ_CP037865.1\|WP_139639175.1\|1646097_1648476_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274006
NZ_CP037865.1\|WP_005718861.1\|1648486_1649107_+\|dimethylsulfoxide-reductase-subunit-B	unknown	unknown	gnl\|CDD\|131996
NZ_CP037865.1\|WP_139617615.1\|1643435_1644929_+\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273923
NZ_CP037865.1\|WP_139639176.1\|1649108_1649957_+\|dimethyl-sulfoxide-reductase-anchor-subunit	unknown	unknown	gnl\|CDD\|113736
NZ_CP037865.1\|WP_139639174.1\|1642336_1643215_-\|4-hydroxybenzoate-octaprenyltransferase	unknown	unknown	gnl\|CDD\|237229
NZ_CP037865.1\|WP_005755345.1\|1650045_1650651_+\|Tat-proofreading-chaperone-DmsD	unknown	unknown	gnl\|CDD\|236938
NZ_CP037865.1\|WP_005718854.1\|1653345_1653876_+\|ATP-dependent-protease-subunit-HslV	unknown	unknown	gnl\|CDD\|235477
NZ_CP037865.1\|WP_005724897.1\|1636635_1637655_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|131470
NZ_CP037865.1\|WP_006253505.1\|1652475_1652892_+\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|376616
NZ_CP037865.1\|WP_064968758.1\|1640944_1641910_+\|lipopolysaccharide-heptosyltransferase-RfaC	unknown	unknown	gnl\|CDD\|236809
NZ_CP037865.1\|WP_005718857.1\|1645072_1645792_+\|MgtC/SapB-family-protein	unknown	unknown	gnl\|CDD\|224204
NZ_CP037865.1\|WP_071523373.1\|1653891_1655223_+\|HslU--HslV-peptidase-ATPase-subunit	unknown	unknown	gnl\|CDD\|235364
NZ_CP037865.1\|WP_139617476.1\|1639425_1639836_+\|copper-chaperone-PCu(A)C	unknown	unknown	gnl\|CDD\|225403
NZ_CP037865.1\|WP_139617474.1\|1632011_1633379_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|236452
NZ_CP037865.1\|WP_139639173.1\|1639901_1640948_+\|lipopolysaccharide-heptosyltransferase-II	unknown	unknown	gnl\|CDD\|182835
NZ_CP037865.1\|WP_005719269.1\|1629267_1629987_-\|(Fe-S)-binding-protein	unknown	unknown	gnl\|CDD\|223325
NZ_CP037865.1\|WP_139617475.1\|1635167_1636610_+\|sucrose-6-phosphate-hydrolase	unknown	unknown	gnl\|CDD\|224536
NZ_CP037865.1\|WP_139639386.1\|1634203_1635130_+\|aminoimidazole-riboside-kinase	unknown	unknown	gnl\|CDD\|236514

Protein	Function_ID	Function_description	E-value
NZ_CP037865.1\|WP_005724902.1\|1633406_1634018_-\|high-frequency-lysogenization-protein-HflD	gnl\|CDD\|225467	COG2915, COG2915, Uncharacterized protein involved in purine metabolism [General function prediction only].	7.18065e-110
NZ_CP037865.1\|WP_005719267.1\|1630064_1631651_-\|L-lactate-permease	gnl\|CDD\|224535	COG1620, LldP, L-lactate permease [Energy production and conversion].	2.44663e-166
NZ_CP037865.1\|WP_139639175.1\|1646097_1648476_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|274006	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.	0
NZ_CP037865.1\|WP_005718861.1\|1648486_1649107_+\|dimethylsulfoxide-reductase-subunit-B	gnl\|CDD\|131996	TIGR02951, anaerobic_dimethyl_sulfoxide_reductase_subunit_B, DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.	3.32802e-89
NZ_CP037865.1\|WP_139617615.1\|1643435_1644929_+\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273923	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	3.46084e-160
NZ_CP037865.1\|WP_139639176.1\|1649108_1649957_+\|dimethyl-sulfoxide-reductase-anchor-subunit	gnl\|CDD\|113736	pfam04976, DmsC, DMSO reductase anchor subunit (DmsC). The terminal electron transfer enzyme Me2SO reductase of Escherichia coli is a heterotrimeric enzyme composed of a membrane extrinsic catalytic dimer (DmsAB) and a membrane intrinsic polytopic anchor subunit (DmsC).	2.34853e-110
NZ_CP037865.1\|WP_139639174.1\|1642336_1643215_-\|4-hydroxybenzoate-octaprenyltransferase	gnl\|CDD\|237229	PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase.	1.15947e-171
NZ_CP037865.1\|WP_005755345.1\|1650045_1650651_+\|Tat-proofreading-chaperone-DmsD	gnl\|CDD\|236938	PRK11621, PRK11621, Tat proofreading chaperone DmsD.	4.95625e-105
NZ_CP037865.1\|WP_005718854.1\|1653345_1653876_+\|ATP-dependent-protease-subunit-HslV	gnl\|CDD\|235477	PRK05456, PRK05456, ATP-dependent protease subunit HslV.	2.44326e-131
NZ_CP037865.1\|WP_005724897.1\|1636635_1637655_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|131470	TIGR02417, Fructose_repressor_Catabolite_repressor/activator., D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer. [Regulatory functions, DNA interactions].	0
NZ_CP037865.1\|WP_006253505.1\|1652475_1652892_+\|IS200/IS605-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	1.15701e-54
NZ_CP037865.1\|WP_064968758.1\|1640944_1641910_+\|lipopolysaccharide-heptosyltransferase-RfaC	gnl\|CDD\|236809	PRK10964, PRK10964, lipopolysaccharide heptosyltransferase RfaC.	0
NZ_CP037865.1\|WP_005718857.1\|1645072_1645792_+\|MgtC/SapB-family-protein	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	1.60089e-66
NZ_CP037865.1\|WP_071523373.1\|1653891_1655223_+\|HslU--HslV-peptidase-ATPase-subunit	gnl\|CDD\|235364	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU.	0
NZ_CP037865.1\|WP_139617476.1\|1639425_1639836_+\|copper-chaperone-PCu(A)C	gnl\|CDD\|225403	COG2847, COG2847, Copper(I)-binding protein [Inorganic ion transport and metabolism].	1.01189e-42
NZ_CP037865.1\|WP_139617474.1\|1632011_1633379_-\|adenylosuccinate-lyase	gnl\|CDD\|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
NZ_CP037865.1\|WP_139639173.1\|1639901_1640948_+\|lipopolysaccharide-heptosyltransferase-II	gnl\|CDD\|182835	PRK10916, PRK10916, ADP-heptose--LPS heptosyltransferase RfaF.	0
NZ_CP037865.1\|WP_005719269.1\|1629267_1629987_-\|(Fe-S)-binding-protein	gnl\|CDD\|223325	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion].	1.32587e-51
NZ_CP037865.1\|WP_139617475.1\|1635167_1636610_+\|sucrose-6-phosphate-hydrolase	gnl\|CDD\|224536	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism].	2.35116e-174
NZ_CP037865.1\|WP_139639386.1\|1634203_1635130_+\|aminoimidazole-riboside-kinase	gnl\|CDD\|236514	PRK09434, PRK09434, aminoimidazole riboside kinase; Provisional.	0

>NZ_CP037865.1|WP_064968758.1|1640944_1641910_+|lipopolysaccharide-heptosyltransferase-RfaC
MKICLVKTSSMGDILHSLPALTDAQRALPNLQVDWVVEESFAEIPHWHSAVRQVIPIALRRWRKTPFTALTRKQWKTYRTLLQSEQYDAVIDAQGLLKSALFATRLARGTRHGYDRHSIREPIAACFYDKKYAISYQQHAVERIRQLFAQSLNYPLPHTQGDYGIARHFPQHAQTMPYVLFFHGTTRQDKFLPDRQWRILAEKLTAQGIQIHVPWSNPQEKQRAERIAQGLDLVTILPKSTLSELAQQIVNASAVVSVDTGLAHLSAALDKTNLTLYGATDPKLIGSYGKNQHYLVAESMDKIEADEIFQKLTALLSLNTI
>NZ_CP037865.1|WP_139639173.1|1639901_1640948_+|lipopolysaccharide-heptosyltransferase-II
MHILIIGPSWVGDMMMSHSLYQTLKQQYPQCEIDVMAPNWCKPLLERMPEVRQAITMPLGHGAFALGDRYRLGKALRHQYDMAIVLPNSLKSTFIPFFAKIPLRRGWKGESRYLFLNDLRSNKKDYPMMVQRYIALAFEKGAVPKAEDLPRPVPYLTVDPVTQQHTLKKFEKQTALISPRPSIGFCPGAEFGPAKRWPHYHYAKLAEMLIQQGYALRLFGSAKDEAVGEEIRQALPETIRHFCINLAGQTSLNEAVDLIADCTAIVTNDSGLMHIAAAVQRPLVALYGPTSPTYTPPLSEKAAIIRLIEGGLIKVRKGKDSDEGYHQSLIDIQPELVFDKLTGLLANT
>NZ_CP037865.1|WP_139617476.1|1639425_1639836_+|copper-chaperone-PCu(A)C
MKSLTQLLFILTALLPTSLFAHIHVEQAQMFSAKAGEPSAIFMNIHNTGNEDVSLALVQSDVRADIVLHGTQHGKMIEVTGINLPAHQMTALKRGGLHIMVFNVEQDLNVGDSFPLRLLFDNGEIMHIEAKIIQYQ
>NZ_CP037865.1|WP_005724897.1|1636635_1637655_+|substrate-binding-domain-containing-protein
MSITNKKRITLSDIAKCCGLSTTTVSMILNNRGEEFKIKAETCQRVKAIAEQQGYRANVYAKSLKMQRSNVIGFVIPDLTNYGFACTAKILEKQCRENGLQLIIACSDDNPQQEKLAIERLLDRQIDFLITAPTHQDPSYYQKIGQHTPILQLDRYVPDLALNYVISNDSEHITTLICRLCDQYQLTEFMYFGGQRTLSPSESRLAGFLQGLKQANLNLKKEWILHRTYQPESGYQMLAETEAKLGRLPQAIFTASYTLLEGVLRYLTEQKKMDLLLNRQLHLATFDDHDILNALPFHIHSIKQNHPQLAQQIFQHIMRYFAGKKSPNQKIDCDVIYRD
>NZ_CP037865.1|WP_139617475.1|1635167_1636610_+|sucrose-6-phosphate-hydrolase
MYIFNQGKYKSLHAQQVGELAQIRQHVLRDTQFRPTYHLAPETGLLNDPNGLVFDGEKYHIFYQWFPYAAIHGMKHWKHFMTYDFHYFQAADPLIPDELFESHGCYSGGALLWQDQIVAFYTGNTRNAENQRIPHQNIAIFKKDGTLLKKRCLLNQAPTGYTEHVRDPKPFITEEGKIRFILGAQREDLSGTALIYEMTDLDATPQLIGEFKLPDFDNQQVFMWECPDLLKLQEQDLFLWSPQGKAQKTYCFQNHYHATYALGQYANLHFFAQHIEELDYGFDFYAPQSIQGSEGIYYAWVGLPDLTYPTDEYQWHSMLSLPRQFSIQQGILYQRPIPQVYAQCLPAHKYWVEGKQQIPHLDRSYVAFDAENQPFTLRFFTNQRGQQLILRYQNGILTLDRTYTTQTALMQQFGEQRHCILPQLNHVEIFFDRSVVEIFLNQGEKVMTSRFFIADRENALDSSRPLCVSVAELKPIILTP
>NZ_CP037865.1|WP_139639386.1|1634203_1635130_+|aminoimidazole-riboside-kinase
MGKIWVLGDAVVDLIPEGENTYLRCAGGAPANVAVGIARLGATTGFIGRVGDDPLGRFMLNKLQQENVCTQYMHLDPKQRTSTVIVDLKEGERSFTFMVNPSADQFLELSDLPHFNPNDWLHCCSIALINEPSRSSTFAAIHRIKAEGGFFSFDPNLRESLWNSPAEMKTVINQVVALADVLKFSEEELFFLTDSDTLSDATAKLTQHYPDKLIIVTLGKLGATYYLQGKSQLVSSKKALIPVDTTGAGDAFVSGLLFGISQVKNWQNPTALVEIIKQANACGALATTAKGAMSALPNKQQLDAFLAE
>NZ_CP037865.1|WP_005724902.1|1633406_1634018_-|high-frequency-lysogenization-protein-HflD
MANYYDITLALAGVCQAAKLVQQFAHEGQADQAAFETSLNTLLQIYPEDTLAVFGGKAQNLKLGLETLLEQMHGTGSDLSRYWISLLALESKLNKDPHAKAELARRIQYLPTQLEHYDLLDEQMLSTLASIYVDVISPLGKKIQVTGSTLYLQQLAMHHRIRACLLAGIRSAVLWRQVGGTKWQVLFSRRKIIAMAKQIYSSL
>NZ_CP037865.1|WP_139617474.1|1632011_1633379_-|adenylosuccinate-lyase
MQLNALTALSPIDGRYQDKVSSLRSIFSEFGLLKFRVTVEVRWLQKLAATDQIQEVSLLSQEANDYLNHIVENFSVQDAECIKEIERTTNHDVKAVEYFLKEKSEALPELAKISEFIHFACTSEDINNLSHALMLKTAREEVILPEWQNLIADISALANEYKTIPLLSRTHGQPASPSTIGKEMANVVYRLQRQFKQLQQIDILGKINGAVGNYNAHLSAYPDIDWHQFSEEFVTSLGLTWNPYTTQIEPHDYIAEFFDNVARFNTIIIDFDRDLWGYIALNHFKQRTIAGEIGSSTMPHKVNPIDFENSEGNLGLANAVMAHLGAKLPVSRWQRDLTDSTVLRNLGVGLGYCLIAYAATRKGISKLEVNEQHLRDELDQNWEVLAEPIQTVMRRYGIEKPYEKLKALTRGKRVDAEAMREFIETLDIPAQEKIRLQQMTPATYIGAAVELVEKL
>NZ_CP037865.1|WP_005719267.1|1630064_1631651_-|L-lactate-permease
MVFFLSILPIVLLIYLMVKRNSLPSYIALPLIAVLTYLLQAFYFGTDLTRLNANVIAGLIATQTPITIIFGAILFNRMMEVSGSTDVLRKWLANINPNPVAQIMIIGWAFAFMIEGASGFGTPAAIAAPILMGLGFKPLQVAMLALVMNSVPVSFGAVGTPTWFGFGPLGLSEDVVLEVGQKTAFIHFIAAFVIPVLALRFLVSWQQIKQNLVFIYISILACTIPYFLLAQVNYEFPALVGGAIGLFISILVANKGIGVSKTAQAEIQLEKVEFGVLVKALFPTMMLIAILIVTRIHQLGIKQLLNDATTWFSVSLGAFGEFKVSQALILSLNNILGQGINESYKTLYVPSLIPFIVTVIISIFVFKLNGAKAKTIAVSTYQQTKKPFFALLGALVMVKLMLVGNENYDSMVITIGKTFADVTGDKWVYFSSYLGAIGAFFSGSNTVSNLTFGGIQLSIAETTGMSVPLILALQSVGGAMGNMVCLNNIIAVCTVLNVSNQEGSILKRTVVPMFLYGVIAALVAVVIY
>NZ_CP037865.1|WP_005719269.1|1629267_1629987_-|(Fe-S)-binding-protein
MNVNFYVTCIGDALKSNVAKQSVLLLEQLGCKITFLEQQGCCGQPALNSGYVLSAIPGMKKLIETFEVNDYPIVAPAGSCVYAIKTYAEYLKEEPEWAARAQKVADRFYDLTDFIVNQLKVVNVGAKLAGNAVYHPSCSLFRKLGVKEEPVKLLQQVEGLNLLPIHNQETCCGFGGTFSVKMAEISGEMVKEKVQHIMAVKPLYLIGADVSCLLNIGGRLKREGHHVKVMHIAEVLMSR
>NZ_CP037865.1|WP_139639174.1|1642336_1643215_-|4-hydroxybenzoate-octaprenyltransferase
MPISKQKWIAYAQLMRFDKPIGTLLLLWPTLWALFLSVKGMPDLSILSIFVLGVIFMRAAGCVINDYADRHIDGAVKRTSKRPLATGAATPEEAKWLFVLLVFCSFILVLFLNTYAIVLSFIAVFLAFIYPFMKRYTHLPQLFLGMAFGWSIPMAYGASIEALPLECWLLFFANLAWTVAYDTQYAMVDRDDDLRIGVKSTAILFAQYDNKIISLLQIVTLFFLGLIGYLSQLHTSYFVVLFLATLLFVYQCKLIKDRERESCFKAFLNNNYFGAMVFVAFLFGIFFDKTIS
>NZ_CP037865.1|WP_139617615.1|1643435_1644929_+|PTS-transporter-subunit-EIIC
MFKQLQQIGKAFMLPIAILPAAGLLLGIGGALSNKATVQAYPVLDNPVLQGIFQIMSAAGSVVFANLALLLCIGLGIGLAKRDKGVAALAAVVGYLIMTGTINALISIFSPEVKGIDTGVIGSLVMGLLTVKLHNRYHNIQLPQILGFFGGSRFVSIVTAFAAIFVGFLFFLIWPTFQGWLVSAGEGIASMGAIGTFFYGFLMRLSGAVGLHHMIYPLFWYTELGGTEIVNGETIIGAQKIFFAQLADPNHQGLFTEGTRFFAGRFDTMMFGLPAACLAMYHCVPKARRGLIGGLFLGAALTSFITGITEPIEFMFLFVAPWLYVFHAFLDGVSFFIADFLNISIGNTFSGGFIDFLLFGILQGNENTNWILVVVVGVFWAMLYYFSFRFLITKFDVMTPGRAEEQEEVVESTSSSLTENAHHIIEALGKAENIEHVDACITRLRVNVKDVKAVDKARLKALGAIDVLEVGGGIQAIFGAKAVLYKSEVNQILGKED
>NZ_CP037865.1|WP_005718857.1|1645072_1645792_+|MgtC/SapB-family-protein
MKMLTDLFDAFLASTHFAILAKMAMAMLLGGIIGLERELKRKAVGVKTCVIIAVTTCVLTIVSIQAAEHYAQVSENIRTDPMRLAAQVISGIGFLGAGVILRKSNDAISGLTTAAIIWAAAGIGIASGAGFFFDAIIATVMILIAVRLSPLVQSLVRRKNNIRKTKITIQLNTPNAIGKVTDILISNNYRLDSLSVKDLPNTDDVRLNMRCLITDKTMLQNVYLLLKNEPEVVSVDLDN
>NZ_CP037865.1|WP_139639175.1|1646097_1648476_+|molybdopterin-dependent-oxidoreductase
MGAALAATNLSLPFKAVANEKKATSSSTENLQEKVVWSACTVNCGSRCPLRMHVKDNKIIYVETDNTGTDTYNVDHQVRACLRGRSMRRRVYNPDRLKYPMKRVGKRGEGKFKRISWDEALNEIATSLRKNIAQYGNESIYLNYGTGTLGGTMTKSWPPGSTMLARFMNCLGGYLNHYGDYSTAQIAVGLDYTYGGGWALGNGLADIENTKLVVLFGNNPAETRMSGGGLTYCIEQARQKSNAKMIIIDPRYTDTAAGREDEWIPIRPGTDAALVSALAYVMITEDLVDQAFLDTYCVGYDEKTLPEGAPKNGHYKAYILGEGDDGIVKTPEWAAKITGIPEQRIIKLAREIAGTKPAYISQGWGPQRRSNGELISRAIAMLPILTGNVGINGGNTGARESTYKVPFVRMPTLTNPVKASIPMFLWTDAIFRAHEMTALTDGIRGVEKLTAPIKVIWNYASNCLINQHSDINRTHEILQDETQCELIITIDNHMTSTAKYSDILLPDCTASEQMDFCTDAFVANMNYVIFADQVITPSFECRNIYDMLTDLAEKMGVKQAFTEGRTQEEWLRHIYQQSRENLPELPTFEEFRQQGIFKKVDPNGFYVAYKAFREDPQANPLKTPSGKIEIYSERLAEIAKTWSLKDDEVIHPLPVHADSFEHYGDKLMEKYPLQMTGFHYKARTHSTYGNVDVIKAATPQEVWINPIDAQARNIKNGDMIRIFNDRGEVQIHAKVTPRIIPGVVALSEGAWYAPDSQGVDHSGCVNVLTTQRPSPLAKGNPQHSNLVQVAKV
>NZ_CP037865.1|WP_005718861.1|1648486_1649107_+|dimethylsulfoxide-reductase-subunit-B
MSVQYGFYFDSDRCTGCKTCELACKDYKDLDTNVNFRRIYEYAGGDWQQQANGCWQHNVFAYYLSISCNHCDNPDCVSVCPTGAMHKTEDGFVIVNEAICIGCRYCHMACPYDAPQYDAMKGHMTKCDGCHSRILEGKKPICVDACPLRALDFAPIDELRKTYGDLAAIAPLPSPEHTAPNLVIKTNKNARPTGDTTGFLANPREV
>NZ_CP037865.1|WP_139639176.1|1649108_1649957_+|dimethyl-sulfoxide-reductase-anchor-subunit
MNGLHELPLVIFTVLAQSVVGAFLLFAIVLFTTEDKHYRVYVHKAMFVLLALLGIGFIASITHLGSPLRAFNALNRVGESMLSNEIATGALFFALAGIYWLFAILDKLPKAFGRFLLVCASAMGLIFMYMMNKVYHISTVPTWHTSFTTWGFYLTIILAGFTLGYGLLHSERPDAKVVSWVPTLVSITTLVAATVIIYQGFALSTVVTSAQKATALVPDFATLSALRFVLLGLAIACLFYVLHKPASWMSKLCAVLLVFAAEMIGRTLFYGLHMTVGMAVGA
>NZ_CP037865.1|WP_005755345.1|1650045_1650651_+|Tat-proofreading-chaperone-DmsD
MNMPQRQWVSLSGRLLGALFYYAPTEAQLESILDFFRQPDWQHEWQHEVDATILQAIQQGLTTEALDTTYQELFIGPAALSAPPWGSVYLDPESVLFGDSLLKLREFLRQHRVEFVTTQNEPEDHIGLMLLLSAYLAENRPELLVIFLSEHVFTWSTRYLQLLANQQTSVFYRGLALLTQATLNQWQQQLDIQVNSVRLYR
>NZ_CP037865.1|WP_006253505.1|1652475_1652892_+|IS200/IS605-family-transposase
MKKETEIRRGRHVVFNLHVHLVFVTKYRREVFTQAILNDLHSIFATICADFEATLVEFDGEDDHVHLLVEYPPKVAISHLVNSLKGVSSRMIRKKNYPSIRKKLWGNQLWSPSYFAGSCGGAPISIIRQYIEQQQTPD
>NZ_CP037865.1|WP_005718854.1|1653345_1653876_+|ATP-dependent-protease-subunit-HslV
MTTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEADQILAIGSGGNFALSAARALVENTDLSAREIVEKSLKIAGDICVYTNTHFTIEELPNS
>NZ_CP037865.1|WP_071523373.1|1653891_1655223_+|HslU--HslV-peptidase-ATPase-subunit
MSEMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQTEIEKNRFRAEEAAEDRILDALLPPAKNQWGQVEASDNNNATRQVFRKKLREGQLDDKEIDIDVAAPSMGVEIMAPPGMEEMTNQLQSMFQNLSSGQTKKRKMKIKDALKTLIDDEAAKLINPEDLKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGTTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELSALSAVDFERILTEPNASLTEQYKALMATEGVNIEFTGESIKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFNASDMQGQVVRIDEAYVMDALGDVVENEDLSRFIL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP037865_1	1.3\|1641999\|28\|NZ_CP037865\|PILER-CR	1641999-1642026	28	MH238466	Pasteurella phage AFS-2018a, complete genome	22732-22759	6	0.786
NZ_CP037865_1	1.3\|1641999\|28\|NZ_CP037865\|PILER-CR	1641999-1642026	28	NZ_CP020374	Shewanella khirikhana strain TH2012 plasmid pSTH1, complete sequence	27996-28023	6	0.786
NZ_CP037865_1	1.3\|1641999\|28\|NZ_CP037865\|PILER-CR	1641999-1642026	28	LR588166	Pseudomonas phage vB_PaeM_MIJ3	29639-29666	6	0.786
NZ_CP037865_1	1.3\|1641999\|28\|NZ_CP037865\|PILER-CR	1641999-1642026	28	MK448729	Streptococcus phage Javan31, complete genome	15849-15876	6	0.786
NZ_CP037865_1	1.3\|1641999\|28\|NZ_CP037865\|PILER-CR	1641999-1642026	28	MK448691	Streptococcus phage Javan17, complete genome	15849-15876	6	0.786
NZ_CP037865_1	1.3\|1641999\|28\|NZ_CP037865\|PILER-CR	1641999-1642026	28	MK448948	Streptococcus phage Javan46, complete genome	15793-15820	6	0.786
NZ_CP037865_1	1.4\|1642059\|28\|NZ_CP037865\|PILER-CR	1642059-1642086	28	NZ_CP021875	Enterococcus wangshanyuanii strain MN05 plasmid unnamed2	5501-5528	7	0.75
NZ_CP037865_1	1.1\|1641989\|35\|NZ_CP037865\|CRISPRCasFinder	1641989-1642023	35	MH238466	Pasteurella phage AFS-2018a, complete genome	22726-22760	8	0.771

1. spacer 1.3|1641999|28|NZ_CP037865|PILER-CR matches to MH238466 (Pasteurella phage AFS-2018a, complete genome) position: , mismatch: 6, identity: 0.786

cgtggctttactgtatcctgctttaatt	CRISPR spacer
tttacttttgctgtatcctgctttaatt	Protospacer
. *. .***.******************

2. spacer 1.3|1641999|28|NZ_CP037865|PILER-CR matches to NZ_CP020374 (Shewanella khirikhana strain TH2012 plasmid pSTH1, complete sequence) position: , mismatch: 6, identity: 0.786

cgtggctttactgtatcctgctttaatt	CRISPR spacer
agttgctttactgcatcctgctttttgt	Protospacer
 ** *********.**********   *

3. spacer 1.3|1641999|28|NZ_CP037865|PILER-CR matches to LR588166 (Pseudomonas phage vB_PaeM_MIJ3) position: , mismatch: 6, identity: 0.786

cgtggctttactgtatcctgctttaatt	CRISPR spacer
ctactctttactatatcctgctttaagt	Protospacer
*    *******.************* *

4. spacer 1.3|1641999|28|NZ_CP037865|PILER-CR matches to MK448729 (Streptococcus phage Javan31, complete genome) position: , mismatch: 6, identity: 0.786

cgtggctttactgtatcctgctttaatt	CRISPR spacer
tgtctttttactgtaacctgctttaata	Protospacer
.**  .********* ***********

5. spacer 1.3|1641999|28|NZ_CP037865|PILER-CR matches to MK448691 (Streptococcus phage Javan17, complete genome) position: , mismatch: 6, identity: 0.786

cgtggctttactgtatcctgctttaatt	CRISPR spacer
tgtctttttactgtaacctgctttaata	Protospacer
.**  .********* ***********

6. spacer 1.3|1641999|28|NZ_CP037865|PILER-CR matches to MK448948 (Streptococcus phage Javan46, complete genome) position: , mismatch: 6, identity: 0.786

cgtggctttactgtatcctgctttaatt	CRISPR spacer
tgtctttttactgtaacctgctttaata	Protospacer
.**  .********* ***********

7. spacer 1.4|1642059|28|NZ_CP037865|PILER-CR matches to NZ_CP021875 (Enterococcus wangshanyuanii strain MN05 plasmid unnamed2) position: , mismatch: 7, identity: 0.75

tttgttgacattgaaaacaattcaccgg	CRISPR spacer
attgttgagattgaaaacaattgtattg	Protospacer
 ******* *************   . *

8. spacer 1.1|1641989|35|NZ_CP037865|CRISPRCasFinder matches to MH238466 (Pasteurella phage AFS-2018a, complete genome) position: , mismatch: 8, identity: 0.771

ccgtggctttactgtatcctgctttaatttggctc	CRISPR spacer
ctttacttttgctgtatcctgctttaatttggcgg	Protospacer
*. *. .***.**********************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

141807 : 152726

Mannheimia_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016570077.1\|141807_142464_-	helix-turn-helix domain-containing protein	A0A0M3LSL8	Mannheimia_phage	5.9e-68	61.2
WP_071523618.1\|142594_142801_+	helix-turn-helix transcriptional regulator	A0A0M3LSY2	Mannheimia_phage	6.0e-19	67.6
WP_139638716.1\|142849_143299_+	hypothetical protein	NA	NA	NA	NA
WP_139638717.1\|143356_144109_+	Rha family transcriptional regulator	A0A2H4J5H6	uncultured_Caudovirales_phage	3.2e-33	36.8
WP_139638718.1\|144066_144429_+	hypothetical protein	A0A0P0IKQ2	Acinetobacter_phage	2.0e-17	44.4
WP_139638719.1\|144921_145611_+	replication protein P	D0UIL4	Aggregatibacter_phage	1.1e-32	34.6
WP_139639355.1\|145620_146151_+	phage N-6-adenine-methyltransferase	A0A0M3LNW2	Mannheimia_phage	3.6e-55	58.9
WP_139638720.1\|146140_146647_+	DUF1367 family protein	A0A0M3LR84	Mannheimia_phage	1.4e-77	82.1
WP_139638721.1\|146806_147388_+	recombination protein NinG	A0A0M3LTG3	Mannheimia_phage	2.3e-55	60.0
WP_139639356.1\|147441_147888_+	antitermination protein	Q5TJL7	Enterobacteria_phage	4.5e-11	32.6
WP_014390733.1\|148204_148501_+	hypothetical protein	A0A0M3LR95	Mannheimia_phage	8.4e-14	71.4
WP_139638722.1\|148497_149028_+	glycoside hydrolase family protein	A0A0M3LPQ1	Mannheimia_phage	3.3e-45	50.9
WP_014667795.1\|149000_149324_+	DUF2570 family protein	NA	NA	NA	NA
WP_139638723.1\|149229_149511_+	hypothetical protein	NA	NA	NA	NA
WP_014390736.1\|149545_149980_-	CopG family transcriptional regulator	A0A0R6PJ17	Moraxella_phage	1.0e-20	38.0
WP_016533497.1\|150008_150191_-	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	3.8e-09	54.2
WP_081274327.1\|150515_150731_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_015691093.1\|151229_152726_+	DUF4041 domain-containing protein	X5JAC1	Clostridium_phage	3.1e-56	50.3

DBSCAN-SWA_2

174805 : 182634

uncultured_Mediterranean_phage(50.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005721045.1\|174805_176068_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	8.1e-98	52.2
WP_005721047.1\|176206_177178_-	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	4.2e-46	40.7
WP_005721049.1\|177188_179039_-	protein translocase subunit SecD	NA	NA	NA	NA
WP_005721053.1\|179064_179361_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	9.0e-08	33.7
WP_006253505.1\|179754_180171_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	3.3e-48	63.5
WP_139616922.1\|180217_181354_+\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	3.8e-123	58.0
WP_139638728.1\|181476_182634_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.2e-91	45.3

DBSCAN-SWA_3

196970 : 206355

Tupanvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005721071.1\|196970_197969_+	dipeptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.3e-15	29.4
WP_005721076.1\|197985_198966_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.0e-15	26.9
WP_005721077.1\|199042_199828_-	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
WP_005721078.1\|199836_200655_-	zinc ABC transporter ATP-binding protein ZnuC	A0A2K9L3Z8	Tupanvirus	5.0e-16	33.2
WP_139639358.1\|200889_202443_+	murein DD-endopeptidase MepM	A0A2K9VGT1	Pontimonas_phage	8.4e-20	48.7
WP_005721080.1\|202518_203466_-	ribose-phosphate pyrophosphokinase	A0A2K9L2G2	Tupanvirus	2.5e-43	38.4
WP_139638735.1\|203535_204423_-	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_005753554.1\|204422_205040_-	lipoprotein localization protein LolB	NA	NA	NA	NA
WP_139638736.1\|205080_206355_-	multifunctional CCA addition/repair protein	A0A0F6YPT7	Sinorhizobium_phage	8.8e-92	49.2

DBSCAN-SWA_4

510061 : 518137

Haemophilus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005716452.1\|510061_511117_+	molybdenum ABC transporter ATP-binding protein ModC	G9BWD6	Planktothrix_phage	4.6e-22	33.3
WP_139638817.1\|511205_511337_-	TonB-dependent receptor domain protein	NA	NA	NA	NA
WP_139638818.1\|511552_512260_-	helix-turn-helix domain-containing protein	F6MII3	Haemophilus_phage	3.8e-52	49.3
WP_139638819.1\|512434_512698_+	transcriptional regulator	F6MII4	Haemophilus_phage	1.2e-19	64.6
WP_139638820.1\|512742_513732_+	hypothetical protein	M4M9R2	Vibrio_phage	3.3e-70	43.9
WP_139638821.1\|513949_514312_+	transcriptional regulator	Q6QIE8	Burkholderia_phage	3.2e-23	43.4
WP_139638822.1\|514430_514853_+	hypothetical protein	NA	NA	NA	NA
WP_139638823.1\|514977_515514_+	N-acetylmuramoyl-L-alanine amidase	F6MIJ9	Haemophilus_phage	6.5e-73	68.6
WP_139617238.1\|517018_518137_-	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	1.1e-24	32.8

DBSCAN-SWA_5

572712 : 648184

Haemophilus_phage(26.67%)

tRNA,protease,plate,tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_139639364.1\|572712_573414_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_005716148.1\|573643_574057_-	YhcB family protein	NA	NA	NA	NA
WP_139638840.1\|574177_575938_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
WP_139617216.1\|576015_576732_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_139617215.1\|576754_577456_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_005716138.1\|577594_578899_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_005716135.1\|578976_580200_+	ROK family transcriptional regulator	NA	NA	NA	NA
WP_139638841.1\|580916_582185_+	divalent metal cation transporter	NA	NA	NA	NA
WP_139638842.1\|582245_584285_-	oligopeptidase A	NA	NA	NA	NA
WP_005751513.1\|584406_584769_+	YbaN family protein	NA	NA	NA	NA
WP_139638843.1\|584825_586397_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005716111.1\|586448_587108_-	GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.2e-41	43.3
WP_005716110.1\|587171_587909_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_139638844.1\|587957_588872_+	N-acetylglucosamine kinase	NA	NA	NA	NA
WP_139638845.1\|589015_589708_+	hypothetical protein	NA	NA	NA	NA
WP_005716108.1\|589783_590524_+	hypothetical protein	NA	NA	NA	NA
WP_005751507.1\|590752_591307_-	NAD(P)H nitroreductase	NA	NA	NA	NA
WP_139638846.1\|591430_593314_+	signal peptide peptidase SppA	A0A2I6UGK8	Salinibacter_virus	4.1e-13	29.0
WP_005726554.1\|593393_593768_+	hypothetical protein	NA	NA	NA	NA
WP_139638847.1\|593829_594768_-	universal stress protein UspE	NA	NA	NA	NA
WP_005716088.1\|594879_595638_-	FNR family transcription factor	NA	NA	NA	NA
WP_005716086.1\|595926_596424_-	non-heme ferritin	NA	NA	NA	NA
WP_005716085.1\|596439_596925_-	non-heme ferritin	NA	NA	NA	NA
WP_139617205.1\|597309_598362_+	3-deoxy-7-phosphoheptulonate synthase	A0A067ZJG7	Escherichia_phage	1.1e-87	50.8
WP_139638848.1\|598371_599496_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_005722076.1\|599610_601839_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
WP_005722078.1\|601877_602684_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_005722080.1\|602670_603879_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_139638849.1\|604080_604839_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_005722084.1\|604874_606284_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	5.8e-28	36.5
WP_005722087.1\|606317_607319_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	8.2e-53	37.0
WP_005722090.1\|607486_608362_+	hypothetical protein	NA	NA	NA	NA
WP_005722092.1\|608387_608975_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	2.3e-31	38.1
WP_005753984.1\|608985_610536_-	anthranilate synthase component 1	NA	NA	NA	NA
WP_005753986.1\|610783_611845_+\|protease	protease SohB	A0A219YA27	Aeromonas_phage	2.3e-05	23.3
WP_139638850.1\|612086_612905_+	OmpA family protein	NA	NA	NA	NA
WP_005726416.1\|612958_613825_-	fructosamine kinase family protein	NA	NA	NA	NA
WP_139638851.1\|614079_615582_+	sodium/proline symporter PutP	NA	NA	NA	NA
WP_139638852.1\|615650_619247_+	bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA	NA	NA	NA	NA
WP_139638853.1\|619341_620475_+	hypothetical protein	NA	NA	NA	NA
WP_139638854.1\|621766_623362_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005722139.1\|623696_625628_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	8.8e-128	37.4
WP_139638855.1\|626144_627203_+\|tail	phage tail protein	F6MIL3	Haemophilus_phage	2.6e-134	69.8
WP_016533279.1\|627205_627862_+\|plate	phage baseplate assembly protein V	A0A0M3LPA3	Mannheimia_phage	2.3e-67	61.5
WP_139638856.1\|627940_628291_+	hypothetical protein	A0A0M3LQK5	Mannheimia_phage	1.5e-46	77.6
WP_139638857.1\|628305_629370_+\|plate	baseplate J/gp47 family protein	F6MIL6	Haemophilus_phage	6.1e-123	63.7
WP_139638858.1\|629366_629957_+	DUF2313 domain-containing protein	F6MIL7	Haemophilus_phage	1.4e-73	69.8
WP_016570130.1\|632549_632729_+	hypothetical protein	NA	NA	NA	NA
WP_139638859.1\|632874_632994_+	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_139638860.1\|633057_633897_+	hypothetical protein	F6MIM2	Haemophilus_phage	1.8e-114	70.9
WP_139638861.1\|635257_635782_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_005722175.1\|635816_636755_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	2.6e-125	80.9
WP_005722177.1\|636938_638264_+	chromosome partition protein MukF	NA	NA	NA	NA
WP_005722179.1\|638314_639046_+	chromosome partition protein MukE	NA	NA	NA	NA
WP_139638862.1\|639045_643533_+	chromosome partition protein MukB	NA	NA	NA	NA
WP_139638863.1\|643608_644043_-	DUF302 domain-containing protein	NA	NA	NA	NA
WP_139617180.1\|644184_645051_+	EamA/RhaT family transporter	NA	NA	NA	NA
WP_139638864.1\|645152_646580_+	exodeoxyribonuclease I	NA	NA	NA	NA
WP_005722182.1\|647421_647733_+	DUF883 domain-containing protein	NA	NA	NA	NA
WP_005722184.1\|647791_648184_+\|holin	phage holin family protein	NA	NA	NA	NA

DBSCAN-SWA_6

702708 : 708364

Haemophilus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005716039.1\|702708_702918_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	1.4e-15	57.1
WP_139638886.1\|702979_703246_-	DNA-binding protein	F6MII4	Haemophilus_phage	2.4e-20	62.5
WP_139638887.1\|703422_704106_+	helix-turn-helix domain-containing protein	F6MII3	Haemophilus_phage	9.3e-32	34.3
WP_005722169.1\|704482_704836_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_005596065.1\|704906_705104_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_139638888.1\|705501_706044_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	6.9e-14	32.9
WP_139616922.1\|706764_707901_-\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	3.8e-123	58.0
WP_006253505.1\|707947_708364_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	3.3e-48	63.5

DBSCAN-SWA_7

820946 : 830802

Escherichia_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_139616922.1\|820946_822083_-\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	3.8e-123	58.0
WP_006253505.1\|822129_822546_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	3.3e-48	63.5
WP_139638922.1\|823679_824153_-	DUF1441 family protein	K7PJY2	Enterobacterial_phage	6.4e-40	58.7
WP_016533221.1\|824411_824588_+	type II toxin-antitoxin system HicA family toxin	A0A0M3LQ86	Mannheimia_phage	2.9e-14	65.5
WP_016533220.1\|824635_825052_+	hypothetical protein	A0A0R6PD76	Moraxella_phage	1.0e-33	52.9
WP_139638923.1\|825089_825371_-	hypothetical protein	NA	NA	NA	NA
WP_078819663.1\|825276_825600_-	DUF2570 family protein	NA	NA	NA	NA
WP_139639369.1\|825602_825956_-	hypothetical protein	Q7Y5V0	Haemophilus_phage	1.5e-30	54.1
WP_139638718.1\|826235_826598_-	hypothetical protein	A0A0P0IKQ2	Acinetobacter_phage	2.0e-17	44.4
WP_139638717.1\|826555_827308_-	Rha family transcriptional regulator	A0A2H4J5H6	uncultured_Caudovirales_phage	3.2e-33	36.8
WP_071523829.1\|827363_827561_-	hypothetical protein	D0UIL7	Aggregatibacter_phage	9.5e-06	71.1
WP_016570079.1\|827563_828016_-	hypothetical protein	NA	NA	NA	NA
WP_064965013.1\|828065_828272_-	helix-turn-helix transcriptional regulator	A0A0N7C2U7	Escherichia_phage	2.2e-13	51.5
WP_139638924.1\|828410_829046_+	LexA family transcriptional repressor	G9L676	Escherichia_phage	4.6e-41	44.3
WP_139638925.1\|829214_830252_+	hypothetical protein	NA	NA	NA	NA
WP_139638926.1\|830199_830802_-	sce7726 family protein	A0A0U2RXY7	Escherichia_phage	1.9e-41	47.9

DBSCAN-SWA_8

835105 : 846246

Mannheimia_phage(55.56%)

integrase

attL 839778:839792|attR 851997:852011

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_139617319.1\|835105_836059_+	hypothetical protein	A0A0M3LR66	Mannheimia_phage	9.0e-49	40.1
WP_139617320.1\|836068_836854_+	phage recombination protein Bet	A0A0M3LR26	Mannheimia_phage	2.1e-88	62.1
WP_139617321.1\|836846_837458_+	YqaJ viral recombinase family protein	A0A0M3LPU0	Mannheimia_phage	8.2e-88	75.9
WP_139617322.1\|837565_837949_+	hypothetical protein	NA	NA	NA	NA
WP_139638928.1\|837951_838854_+	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	8.4e-65	47.5
WP_081355597.1\|838879_839329_+	DUF551 domain-containing protein	A0A0M3LQK2	Mannheimia_phage	9.2e-12	45.7
WP_139638929.1\|839340_839826_+	DUF551 domain-containing protein	A0A0M3LS47	Mannheimia_phage	2.4e-34	51.5
839778:839792	attL	NA	NA	NA	NA
WP_139638930.1\|839835_840066_+	hypothetical protein	NA	NA	NA	NA
WP_139638931.1\|840119_840416_+	hypothetical protein	NA	NA	NA	NA
WP_015691047.1\|840460_840757_+	hypothetical protein	NA	NA	NA	NA
WP_071522871.1\|841387_841600_+	hypothetical protein	NA	NA	NA	NA
WP_139616948.1\|841628_841937_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_139638932.1\|841834_842926_+\|integrase	tyrosine-type recombinase/integrase	A0A077KGX2	Edwardsiella_phage	5.4e-58	35.9
WP_005726097.1\|843268_843931_+	BAX inhibitor protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.6e-31	53.4
WP_005721637.1\|844029_844359_+	TusE/DsrC/DsvC family sulfur relay protein	NA	NA	NA	NA
WP_005721635.1\|844471_845353_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_005753777.1\|845352_846246_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	4.1e-11	25.5
851997:852011	attR	NA	NA	NA	NA

DBSCAN-SWA_9

1348834 : 1358128

Mannheimia_phage(50.0%)

tail,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_139639091.1\|1348834_1349026_-	hypothetical protein	A0A0M3LQ21	Mannheimia_phage	1.3e-20	70.5
WP_139639092.1\|1349147_1349546_-	hypothetical protein	NA	NA	NA	NA
WP_139639093.1\|1349574_1349757_+	hypothetical protein	A0A0M3LQH8	Mannheimia_phage	1.3e-12	63.6
WP_139639094.1\|1349878_1350454_+	DUF1834 family protein	F6MIJ8	Haemophilus_phage	2.6e-27	48.7
WP_139639095.1\|1350457_1350871_+	hypothetical protein	NA	NA	NA	NA
WP_139639096.1\|1350873_1351041_+	DUF2635 domain-containing protein	A0A0M3LQM9	Mannheimia_phage	6.8e-13	74.5
WP_139639097.1\|1351075_1351417_-	hypothetical protein	A0A0M3LSI2	Mannheimia_phage	1.5e-14	43.9
WP_139639098.1\|1351416_1351785_-\|tail	phage tail protein	A0A0M3LRV6	Mannheimia_phage	1.8e-26	53.9
WP_005725059.1\|1352296_1352851_-	PTS sorbitol transporter subunit IIC	NA	NA	NA	NA
WP_139639099.1\|1353176_1354004_-	neutral zinc metallopeptidase	A0A1I9SA48	Rhodococcus_phage	2.3e-32	37.7
WP_005719483.1\|1354175_1354619_+	peptidoglycan-binding protein LysM	J9QDY6	Clostridium_phage	1.4e-07	44.3
WP_139639100.1\|1354832_1356131_+	trigger factor	NA	NA	NA	NA
WP_005719487.1\|1356295_1356877_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	2.4e-60	62.4
WP_139639102.1\|1356892_1358128_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	3.4e-125	56.5

DBSCAN-SWA_10

1419399 : 1427573

Escherichia_phage(33.33%)