CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP040830	Paenibacillus polymyxa strain ZF129 plasmid pAP1, complete sequence	0 crisprs	NA	0
NZ_CP040831	Paenibacillus polymyxa strain ZF129 plasmid pAP2, complete sequence	0 crisprs	NA	0
NZ_CP040829	Paenibacillus polymyxa strain ZF129 chromosome, complete genome	0 crisprs	DEDDh,WYL,csa3,cas3,DinG	6

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

533244 : 558215

Bacillus_phage(38.89%)

holin,plate,tail,portal

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_126666102.1\|533244_537735_+	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	2.4e-91	26.8
WP_126666101.1\|537915_538881_-	glycoside hydrolase family 25 protein	D0R7H8	Paenibacillus_phage	6.5e-55	49.8
WP_016821295.1\|539033_539480_-\|holin	phage holin family protein	R9TMD4	Paenibacillus_phage	8.7e-39	62.2
WP_126666100.1\|539565_539832_-	hypothetical protein	NA	NA	NA	NA
WP_117288560.1\|539890_540502_-	hypothetical protein	NA	NA	NA	NA
WP_117288559.1\|540517_543037_-	hypothetical protein	A0A0A0RMM9	Bacillus_phage	3.2e-13	26.3
WP_117288558.1\|543038_543713_-	YmfQ family protein	A0A0A7RTU9	Clostridium_phage	2.8e-28	43.8
WP_117288557.1\|543705_544857_-\|plate	baseplate J/gp47 family protein	S6AVU3	Thermus_phage	2.4e-40	34.9
WP_117288556.1\|544856_545327_-	DUF2634 domain-containing protein	A0A0N7ACH4	Bacillus_phage	2.0e-25	38.6
WP_017426416.1\|545313_545721_-	hypothetical protein	A0A0N7ACD3	Bacillus_phage	3.9e-09	32.3
WP_102998618.1\|545713_546691_-\|portal	phage portal protein	A0A0N6W8H4	Bacillus_phage	1.9e-78	47.7
WP_025364227.1\|546687_547329_-	LysM peptidoglycan-binding domain-containing protein	A0A0N7ACF7	Bacillus_phage	2.9e-43	52.3
WP_117288554.1\|547345_549226_-	transcriptional regulator	NA	NA	NA	NA
WP_007429164.1\|549398_549833_-	hypothetical protein	A0A2H4J883	uncultured_Caudovirales_phage	1.8e-20	42.0
WP_016821317.1\|549933_550341_-\|tail	phage tail tube protein	A0A2H4J032	uncultured_Caudovirales_phage	1.5e-40	61.8
WP_126666099.1\|550463_551930_-\|tail	phage tail sheath protein	A0A0N7AEC6	Bacillus_phage	1.4e-72	35.8
WP_016821321.1\|551932_552151_-	hypothetical protein	NA	NA	NA	NA
WP_126666098.1\|552161_553022_-	hypothetical protein	NA	NA	NA	NA
WP_126666097.1\|553474_554329_-	aminoglycoside 6-adenylyltransferase	E4ZFP8	Streptococcus_phage	1.9e-90	54.3
WP_090888190.1\|554447_554924_-	transcriptional regulator	A0A0C5AJ96	Bacteriophage	5.3e-42	62.7
WP_013369769.1\|555199_555673_+	helix-turn-helix domain-containing protein	S6C481	Thermus_phage	3.7e-19	39.7
WP_126666096.1\|555684_556110_+	ImmA/IrrE family metallo-endopeptidase	A0A0S2SXM3	Bacillus_phage	6.9e-17	38.0
WP_126666095.1\|556304_558215_+	LysM peptidoglycan-binding domain-containing protein	A0A2P1CFA9	Microbacterium_phage	1.2e-07	57.8

DBSCAN-SWA_2

935252 : 944473

Mollivirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_126666017.1\|935252_936293_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.2e-70	46.1
WP_126666016.1\|937009_938491_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.1e-52	32.5
WP_017426171.1\|938475_940719_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	8.0e-165	42.4
WP_016819768.1\|940696_941386_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_007428837.1\|941390_941636_-	phosphoribosylformylglycinamidine synthase subunit PurS	A0A0E3FJ99	Synechococcus_phage	1.4e-06	37.7
WP_016819767.1\|941694_942576_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0M4JBD3	Mollivirus	4.4e-42	35.3
WP_031462891.1\|943174_944473_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	7.0e-20	33.1

DBSCAN-SWA_3

2525972 : 2534419

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_126666380.1\|2525972_2527349_+	mannose-1-phosphate guanylyltransferase	A0A1V0SH58	Hokovirus	4.8e-43	28.8
WP_126666379.1\|2527368_2528112_+	NTP transferase domain-containing protein	I7I009	Enterobacteria_phage	5.5e-54	47.1
WP_126666378.1\|2528135_2528684_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.2e-39	46.3
WP_126666377.1\|2528796_2529816_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	2.1e-80	47.6
WP_126666376.1\|2529817_2530681_+	dTDP-4-dehydrorhamnose reductase	A0A140G5S3	Enterobacteria_phage	7.9e-36	37.3
WP_126666468.1\|2530774_2531155_+	GtrA family protein	NA	NA	NA	NA
WP_139625363.1\|2531166_2533389_+	hypothetical protein	NA	NA	NA	NA
WP_126666374.1\|2533441_2534419_+	glycosyltransferase family 2 protein	U5P087	Shigella_phage	5.0e-79	50.7

DBSCAN-SWA_4

4243683 : 4250878

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016822244.1\|4243683_4244349_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.0e-38	40.9
WP_038978072.1\|4244462_4245107_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	1.1e-58	55.7
WP_025366264.1\|4245136_4245601_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	7.4e-41	59.2
WP_017427525.1\|4245774_4246569_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	3.7e-08	30.5
WP_019687880.1\|4246537_4247146_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.1e-15	33.3
WP_102999122.1\|4247288_4248002_+	DUF2953 domain-containing protein	NA	NA	NA	NA
WP_016822238.1\|4248100_4248589_+	sporulation protein YtfJ	NA	NA	NA	NA
WP_044785218.1\|4248680_4249403_-	hypothetical protein	NA	NA	NA	NA
WP_102999121.1\|4249615_4250878_+	D-alanyl-D-alanine carboxypeptidase	A0A1P8VVG5	Erythrobacter_phage	2.3e-07	32.9

DBSCAN-SWA_5

4620275 : 4628067

Bacillus_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_017427017.1\|4620275_4621181_+	NUDIX hydrolase	G3MA14	Bacillus_virus	2.4e-35	33.8
WP_016820795.1\|4621211_4621694_+	NADAR family protein	A0A0S0N9W6	Pseudomonas_phage	8.3e-43	56.1
WP_126666514.1\|4621699_4622599_+	TIGR02452 family protein	G3MBH6	Bacillus_virus	2.6e-58	46.2
WP_126666513.1\|4622648_4623251_+	adenylyl-sulfate kinase	NA	NA	NA	NA
WP_017427013.1\|4623539_4624997_+	catalase	A0A2K9L0T1	Tupanvirus	2.7e-113	43.0
WP_126666512.1\|4625118_4626429_-	MATE family efflux transporter	NA	NA	NA	NA
WP_126666511.1\|4626395_4627238_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.1e-13	24.5
WP_126666510.1\|4627230_4628067_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.5e-18	36.9

DBSCAN-SWA_6

5688162 : 5698854

Bacillus_phage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016819637.1\|5688162_5690817_-	DNA polymerase I	A0A060AM05	Listeria_phage	2.3e-46	29.8
WP_016819636.1\|5690992_5691652_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_016819635.1\|5691692_5692451_-	phosphate ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.5e-14	32.4
WP_123797044.1\|5692578_5693703_-	CBS domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	4.1e-08	26.9
WP_013370356.1\|5693860_5694592_-	response regulator transcription factor	W8CYM9	Bacillus_phage	3.5e-37	34.5
WP_126665818.1\|5694720_5696523_-	HAMP domain-containing protein	W8CYF6	Bacillus_phage	3.5e-38	36.3
WP_126667025.1\|5696666_5697811_-\|transposase	IS3 family transposase	A0A0N9SIX5	Staphylococcus_phage	7.7e-39	62.6
WP_016819632.1\|5697933_5698854_-	glucose 1-dehydrogenase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	3.4e-53	41.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage