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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP040886 Escherichia coli strain K71-77 chromosome, complete genome 12 crisprs DinG,DEDDh,WYL,RT,cas3,csa3,PD-DExK,cas5,cas6e,cas1,cas2,c2c9_V-U4 0 18 11 0
NZ_CP040885 Escherichia coli strain K71-77 plasmid pK71-77-2, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP040884 Escherichia coli strain K71-77 plasmid pK71-77-1-NDM, complete sequence 0 crisprs DEDDh 0 0 12 0

Results visualization

1. NZ_CP040886
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040886_1 318272-318363 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040886_2 623114-623258 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040886_3 1120034-1120187 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040886_4 1309366-1309481 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040886_5 1332394-1332526 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040886_6 2926033-2926172 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040886_7 2969372-2969489 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040886_8 3344376-3344831 Orphan I-E
7 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040886_9 3367216-3367611 Unclear I-E
6 spacers
cas2,cas1,cas6e,cas5

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040886_10 3759492-3759598 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040886_11 3909722-3909839 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP040886_12 4600781-4600904 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP040886_1 1.1|318298|40|NZ_CP040886|CRISPRCasFinder 318298-318337 40 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 47951-47990 0 1.0
NZ_CP040886_5 5.1|1332411|42|NZ_CP040886|PILER-CR 1332411-1332452 42 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141085-141126 0 1.0
NZ_CP040886_5 5.2|1332470|40|NZ_CP040886|PILER-CR 1332470-1332509 40 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141028-141067 1 0.975
NZ_CP040886_10 10.1|3759522|47|NZ_CP040886|CRISPRCasFinder 3759522-3759568 47 NC_016160 Escherichia phage HK75, complete genome 28586-28632 1 0.979
NZ_CP040886_10 10.1|3759522|47|NZ_CP040886|CRISPRCasFinder 3759522-3759568 47 NC_019705 Enterobacteria phage mEpX2, complete genome 29040-29086 1 0.979
NZ_CP040886_10 10.1|3759522|47|NZ_CP040886|CRISPRCasFinder 3759522-3759568 47 NC_019719 Enterobacteria phage HK633, complete genome 31734-31780 1 0.979
NZ_CP040886_10 10.1|3759522|47|NZ_CP040886|CRISPRCasFinder 3759522-3759568 47 JF974339 Enterobacteria phage IME10, complete genome 9717-9763 1 0.979
NZ_CP040886_10 10.1|3759522|47|NZ_CP040886|CRISPRCasFinder 3759522-3759568 47 NC_019715 Enterobacterial phage mEp234, complete genome 30402-30448 2 0.957
NZ_CP040886_10 10.1|3759522|47|NZ_CP040886|CRISPRCasFinder 3759522-3759568 47 NC_019711 Enterobacteria phage HK629, complete genome 37163-37209 2 0.957
NZ_CP040886_10 10.1|3759522|47|NZ_CP040886|CRISPRCasFinder 3759522-3759568 47 NC_019768 Enterobacteria phage HK106, complete genome 32698-32744 2 0.957
NZ_CP040886_10 10.1|3759522|47|NZ_CP040886|CRISPRCasFinder 3759522-3759568 47 KY979108 Escherichia phage ECP1, complete genome 421-467 2 0.957
NZ_CP040886_10 10.1|3759522|47|NZ_CP040886|CRISPRCasFinder 3759522-3759568 47 NC_005344 Enterobacteria phage Sf6, complete genome 28404-28450 2 0.957
NZ_CP040886_12 12.1|4600824|38|NZ_CP040886|CRISPRCasFinder 4600824-4600861 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 2 0.947
NZ_CP040886_3 3.1|1120087|48|NZ_CP040886|CRISPRCasFinder 1120087-1120134 48 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 4089-4136 3 0.938
NZ_CP040886_3 3.1|1120087|48|NZ_CP040886|CRISPRCasFinder 1120087-1120134 48 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 4088-4135 3 0.938
NZ_CP040886_3 3.1|1120087|48|NZ_CP040886|CRISPRCasFinder 1120087-1120134 48 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 4088-4135 3 0.938
NZ_CP040886_3 3.1|1120087|48|NZ_CP040886|CRISPRCasFinder 1120087-1120134 48 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 4088-4135 3 0.938
NZ_CP040886_6 6.1|2926082|42|NZ_CP040886|CRISPRCasFinder 2926082-2926123 42 NZ_CP010208 Escherichia coli strain M11 plasmid B, complete sequence 30214-30255 7 0.833
NZ_CP040886_8 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT 3344710-3344741 32 NZ_MG299151 Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence 51276-51307 7 0.781
NZ_CP040886_8 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT 3344710-3344741 32 NZ_KY471628 Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence 45716-45747 7 0.781
NZ_CP040886_8 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT 3344710-3344741 32 NZ_MG299131 Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence 51276-51307 7 0.781
NZ_CP040886_8 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT 3344710-3344741 32 NZ_KY471629 Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence 45716-45747 7 0.781
NZ_CP040886_8 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT 3344710-3344741 32 NZ_MG299133 Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence 51276-51307 7 0.781
NZ_CP040886_8 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT 3344710-3344741 32 NZ_MG299128 Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence 51276-51307 7 0.781
NZ_CP040886_8 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT 3344710-3344741 32 NZ_MG299147 Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence 51276-51307 7 0.781
NZ_CP040886_8 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT 3344710-3344741 32 NC_018995 Escherichia coli plasmid pHUSEC41-1, complete sequence 29015-29046 7 0.781
NZ_CP040886_8 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT 3344710-3344741 32 NZ_CP053235 Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence 78292-78323 7 0.781
NZ_CP040886_8 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT 3344710-3344741 32 NZ_CP005999 Escherichia coli B7A plasmid pEB1, complete sequence 39563-39594 7 0.781
NZ_CP040886_8 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT 3344710-3344741 32 KU932021 Escherichia coli plasmid pEC3I, complete sequence 51902-51933 7 0.781
NZ_CP040886_8 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT 3344710-3344741 32 NZ_CP024154 Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence 18560-18591 7 0.781
NZ_CP040886_8 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT 3344710-3344741 32 NC_011754 Escherichia coli ED1a plasmid pECOED, complete sequence 49240-49271 7 0.781
NZ_CP040886_8 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT 3344710-3344741 32 NZ_CP015141 Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence 81434-81465 7 0.781
NZ_CP040886_8 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT 3344710-3344741 32 NZ_LR213460 Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3 28916-28947 7 0.781
NZ_CP040886_8 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT 3344710-3344741 32 NZ_MH287044 Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence 36182-36213 7 0.781
NZ_CP040886_8 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT 3344710-3344741 32 NZ_MH618673 Escherichia coli strain 838B plasmid p838B-R, complete sequence 32230-32261 7 0.781
NZ_CP040886_9 9.1|3367246|31|NZ_CP040886|CRISPRCasFinder 3367246-3367276 31 NC_007336 Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence 62682-62712 7 0.774
NZ_CP040886_9 9.1|3367246|31|NZ_CP040886|CRISPRCasFinder 3367246-3367276 31 NZ_CP013104 Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence 1222106-1222136 7 0.774
NZ_CP040886_9 9.1|3367246|31|NZ_CP040886|CRISPRCasFinder 3367246-3367276 31 NZ_CP012748 Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence 2467672-2467702 7 0.774
NZ_CP040886_9 9.4|3367429|31|NZ_CP040886|CRISPRCasFinder 3367429-3367459 31 NC_007336 Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence 530641-530671 7 0.774
NZ_CP040886_6 6.1|2926082|42|NZ_CP040886|CRISPRCasFinder 2926082-2926123 42 NZ_CP048307 Escherichia coli strain 9 plasmid p009_C, complete sequence 24899-24940 8 0.81
NZ_CP040886_8 8.6|3344709|33|NZ_CP040886|PILER-CR 3344709-3344741 33 NZ_MG299151 Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence 51275-51307 8 0.758
NZ_CP040886_8 8.6|3344709|33|NZ_CP040886|PILER-CR 3344709-3344741 33 NZ_KY471628 Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence 45715-45747 8 0.758
NZ_CP040886_8 8.6|3344709|33|NZ_CP040886|PILER-CR 3344709-3344741 33 NZ_MG299131 Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence 51275-51307 8 0.758
NZ_CP040886_8 8.6|3344709|33|NZ_CP040886|PILER-CR 3344709-3344741 33 NZ_KY471629 Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence 45715-45747 8 0.758
NZ_CP040886_8 8.6|3344709|33|NZ_CP040886|PILER-CR 3344709-3344741 33 NZ_MG299133 Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence 51275-51307 8 0.758
NZ_CP040886_8 8.6|3344709|33|NZ_CP040886|PILER-CR 3344709-3344741 33 NZ_MG299128 Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence 51275-51307 8 0.758
NZ_CP040886_8 8.6|3344709|33|NZ_CP040886|PILER-CR 3344709-3344741 33 NZ_MG299147 Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence 51275-51307 8 0.758
NZ_CP040886_8 8.6|3344709|33|NZ_CP040886|PILER-CR 3344709-3344741 33 NC_018995 Escherichia coli plasmid pHUSEC41-1, complete sequence 29014-29046 8 0.758
NZ_CP040886_8 8.6|3344709|33|NZ_CP040886|PILER-CR 3344709-3344741 33 NZ_CP053235 Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence 78291-78323 8 0.758
NZ_CP040886_8 8.6|3344709|33|NZ_CP040886|PILER-CR 3344709-3344741 33 NZ_CP024154 Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence 18559-18591 8 0.758
NZ_CP040886_8 8.6|3344709|33|NZ_CP040886|PILER-CR 3344709-3344741 33 NC_011754 Escherichia coli ED1a plasmid pECOED, complete sequence 49239-49271 8 0.758
NZ_CP040886_8 8.6|3344709|33|NZ_CP040886|PILER-CR 3344709-3344741 33 NZ_CP015141 Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence 81433-81465 8 0.758
NZ_CP040886_8 8.6|3344709|33|NZ_CP040886|PILER-CR 3344709-3344741 33 NZ_LR213460 Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3 28915-28947 8 0.758
NZ_CP040886_8 8.6|3344709|33|NZ_CP040886|PILER-CR 3344709-3344741 33 NZ_MH287044 Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence 36181-36213 8 0.758
NZ_CP040886_8 8.6|3344709|33|NZ_CP040886|PILER-CR 3344709-3344741 33 NZ_MH618673 Escherichia coli strain 838B plasmid p838B-R, complete sequence 32229-32261 8 0.758
NZ_CP040886_8 8.6|3344709|33|NZ_CP040886|PILER-CR 3344709-3344741 33 NZ_CP005999 Escherichia coli B7A plasmid pEB1, complete sequence 39563-39595 8 0.758
NZ_CP040886_8 8.6|3344709|33|NZ_CP040886|PILER-CR 3344709-3344741 33 KU932021 Escherichia coli plasmid pEC3I, complete sequence 51902-51934 8 0.758
NZ_CP040886_8 8.12|3344649|32|NZ_CP040886|CRISPRCasFinder,CRT 3344649-3344680 32 NZ_CP012748 Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence 1417960-1417991 8 0.75
NZ_CP040886_9 9.4|3367429|31|NZ_CP040886|CRISPRCasFinder 3367429-3367459 31 NZ_CP036297 Planctomycetes bacterium Pla86 plasmid pPla86_1, complete sequence 14953-14983 8 0.742
NZ_CP040886_9 9.4|3367429|31|NZ_CP040886|CRISPRCasFinder 3367429-3367459 31 NZ_CP036288 Planctomycetes bacterium Pla133 plasmid pPla133_1, complete sequence 14983-15013 8 0.742
NZ_CP040886_9 9.4|3367429|31|NZ_CP040886|CRISPRCasFinder 3367429-3367459 31 NZ_CP015882 Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence 3454-3484 8 0.742
NZ_CP040886_9 9.4|3367429|31|NZ_CP040886|CRISPRCasFinder 3367429-3367459 31 NZ_CP017750 Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence 148992-149022 8 0.742
NZ_CP040886_9 9.7|3367246|32|NZ_CP040886|PILER-CR,CRT 3367246-3367277 32 NC_007336 Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence 62682-62713 8 0.75
NZ_CP040886_9 9.7|3367246|32|NZ_CP040886|PILER-CR,CRT 3367246-3367277 32 NZ_CP013104 Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence 1222106-1222137 8 0.75
NZ_CP040886_9 9.7|3367246|32|NZ_CP040886|PILER-CR,CRT 3367246-3367277 32 NZ_CP012748 Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence 2467671-2467702 8 0.75
NZ_CP040886_9 9.7|3367246|32|NZ_CP040886|PILER-CR,CRT 3367246-3367277 32 NC_008759 Polaromonas naphthalenivorans CJ2 plasmid pPNAP03, complete sequence 12670-12701 8 0.75
NZ_CP040886_9 9.10|3367429|32|NZ_CP040886|PILER-CR,CRT 3367429-3367460 32 NZ_CP017750 Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence 148991-149022 8 0.75
NZ_CP040886_9 9.10|3367429|32|NZ_CP040886|PILER-CR,CRT 3367429-3367460 32 NC_007336 Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence 530640-530671 8 0.75
NZ_CP040886_9 9.11|3367490|32|NZ_CP040886|PILER-CR,CRT 3367490-3367521 32 NZ_CP006991 Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence 532343-532374 8 0.75
NZ_CP040886_6 6.1|2926082|42|NZ_CP040886|CRISPRCasFinder 2926082-2926123 42 NZ_CP048307 Escherichia coli strain 9 plasmid p009_C, complete sequence 24786-24827 9 0.786
NZ_CP040886_9 9.1|3367246|31|NZ_CP040886|CRISPRCasFinder 3367246-3367276 31 NC_011987 Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence 86182-86212 9 0.71
NZ_CP040886_9 9.2|3367307|31|NZ_CP040886|CRISPRCasFinder 3367307-3367337 31 CP011075 Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence 244686-244716 9 0.71
NZ_CP040886_9 9.2|3367307|31|NZ_CP040886|CRISPRCasFinder 3367307-3367337 31 GU075905 Prochlorococcus phage P-HM2, complete genome 78536-78566 9 0.71
NZ_CP040886_9 9.5|3367490|31|NZ_CP040886|CRISPRCasFinder 3367490-3367520 31 NZ_CP040723 Rhodococcus pyridinivorans strain YF3 plasmid unnamed4, complete sequence 35740-35770 9 0.71
NZ_CP040886_9 9.10|3367429|32|NZ_CP040886|PILER-CR,CRT 3367429-3367460 32 NZ_CP036297 Planctomycetes bacterium Pla86 plasmid pPla86_1, complete sequence 14953-14984 9 0.719
NZ_CP040886_9 9.10|3367429|32|NZ_CP040886|PILER-CR,CRT 3367429-3367460 32 NZ_CP036288 Planctomycetes bacterium Pla133 plasmid pPla133_1, complete sequence 14983-15014 9 0.719
NZ_CP040886_9 9.10|3367429|32|NZ_CP040886|PILER-CR,CRT 3367429-3367460 32 NZ_CP015882 Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence 3454-3485 9 0.719
NZ_CP040886_9 9.11|3367490|32|NZ_CP040886|PILER-CR,CRT 3367490-3367521 32 NZ_CP040723 Rhodococcus pyridinivorans strain YF3 plasmid unnamed4, complete sequence 35740-35771 9 0.719
NZ_CP040886_9 9.7|3367246|32|NZ_CP040886|PILER-CR,CRT 3367246-3367277 32 NC_011987 Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence 86181-86212 10 0.688
NZ_CP040886_9 9.8|3367307|32|NZ_CP040886|PILER-CR,CRT 3367307-3367338 32 CP011075 Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence 244686-244717 10 0.688
NZ_CP040886_9 9.8|3367307|32|NZ_CP040886|PILER-CR,CRT 3367307-3367338 32 GU075905 Prochlorococcus phage P-HM2, complete genome 78536-78567 10 0.688

1. spacer 1.1|318298|40|NZ_CP040886|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 5.1|1332411|42|NZ_CP040886|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 0, identity: 1.0

tgtcacacgcagataaatccaactttcaatattgttaagttc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
******************************************

3. spacer 5.2|1332470|40|NZ_CP040886|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.975

catggcgtagcaaaaagaaattttcaatattgctttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
********** *****************************

4. spacer 10.1|3759522|47|NZ_CP040886|CRISPRCasFinder matches to NC_016160 (Escherichia phage HK75, complete genome) position: , mismatch: 1, identity: 0.979

acggttgtccaacgcaaacaccagtaatggcgcggctctcagtggag	CRISPR spacer
acggttgtccaacgcaaacaccagtaatggcgcggctctcagcggag	Protospacer
******************************************.****

5. spacer 10.1|3759522|47|NZ_CP040886|CRISPRCasFinder matches to NC_019705 (Enterobacteria phage mEpX2, complete genome) position: , mismatch: 1, identity: 0.979

acggttgtccaacgcaaacaccagtaatggcgcggctctcagtggag	CRISPR spacer
acggttgtccaacgcaaacaccagtaatggcgcggctctcagcggag	Protospacer
******************************************.****

6. spacer 10.1|3759522|47|NZ_CP040886|CRISPRCasFinder matches to NC_019719 (Enterobacteria phage HK633, complete genome) position: , mismatch: 1, identity: 0.979

acggttgtccaacgcaaacaccagtaatggcgcggctctcagtggag	CRISPR spacer
acggttgtccaacgcaaacaccagtaatggcgcggctctcagcggag	Protospacer
******************************************.****

7. spacer 10.1|3759522|47|NZ_CP040886|CRISPRCasFinder matches to JF974339 (Enterobacteria phage IME10, complete genome) position: , mismatch: 1, identity: 0.979

acggttgtccaacgcaaacaccagtaatggcgcggctctcagtggag	CRISPR spacer
acggttgtccaacgcaaacaccagtaatggcgcggctctcagcggag	Protospacer
******************************************.****

8. spacer 10.1|3759522|47|NZ_CP040886|CRISPRCasFinder matches to NC_019715 (Enterobacterial phage mEp234, complete genome) position: , mismatch: 2, identity: 0.957

acggttgtccaacgcaaacaccagtaatggcgcggctctcagtggag	CRISPR spacer
acggttgtccaacgcaaacaccagtaatggcgcggatctcagcggag	Protospacer
*********************************** ******.****

9. spacer 10.1|3759522|47|NZ_CP040886|CRISPRCasFinder matches to NC_019711 (Enterobacteria phage HK629, complete genome) position: , mismatch: 2, identity: 0.957

acggttgtccaacgcaaacaccagtaatggcgcggctctcagtggag	CRISPR spacer
acggttgtccaacgcaaacaccagtaatggcgcgtctctcagcggag	Protospacer
********************************** *******.****

10. spacer 10.1|3759522|47|NZ_CP040886|CRISPRCasFinder matches to NC_019768 (Enterobacteria phage HK106, complete genome) position: , mismatch: 2, identity: 0.957

acggttgtccaacgcaaacaccagtaatggcgcggctctcagtggag	CRISPR spacer
acggttgtccaacgcaaacaccagtaatggcgcggatctcagcggag	Protospacer
*********************************** ******.****

11. spacer 10.1|3759522|47|NZ_CP040886|CRISPRCasFinder matches to KY979108 (Escherichia phage ECP1, complete genome) position: , mismatch: 2, identity: 0.957

acggttgtccaacgcaaacaccagtaatggcgcggctctcagtggag	CRISPR spacer
acagttgtccaacgcaaacaccagtaatggcgcggctctcagcggag	Protospacer
**.***************************************.****

12. spacer 10.1|3759522|47|NZ_CP040886|CRISPRCasFinder matches to NC_005344 (Enterobacteria phage Sf6, complete genome) position: , mismatch: 2, identity: 0.957

acggttgtccaacgcaaacaccagtaatggcgcggctctcagtggag	CRISPR spacer
acgtttgtccaacgcaaacaccagtaatggcgcggctctcagcggag	Protospacer
*** **************************************.****

13. spacer 12.1|4600824|38|NZ_CP040886|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

14. spacer 3.1|1120087|48|NZ_CP040886|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 3, identity: 0.938

tcagcgtcgcatcaggcatctgcgcataaccgccggatgcggcgtaaa	CRISPR spacer
ccagcgtcgcatcaggcatctgcgcataactgccggatgcggcataaa	Protospacer
.*****************************.************.****

15. spacer 3.1|1120087|48|NZ_CP040886|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 3, identity: 0.938

tcagcgtcgcatcaggcatctgcgcataaccgccggatgcggcgtaaa	CRISPR spacer
ccagcgtcgcatcaggcatctgcgcataactgccggatgcggcataaa	Protospacer
.*****************************.************.****

16. spacer 3.1|1120087|48|NZ_CP040886|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 3, identity: 0.938

tcagcgtcgcatcaggcatctgcgcataaccgccggatgcggcgtaaa	CRISPR spacer
ccagcgtcgcatcaggcatctgcgcataactgccggatgcggcataaa	Protospacer
.*****************************.************.****

17. spacer 3.1|1120087|48|NZ_CP040886|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 3, identity: 0.938

tcagcgtcgcatcaggcatctgcgcataaccgccggatgcggcgtaaa	CRISPR spacer
ccagcgtcgcatcaggcatctgcgcataactgccggatgcggcataaa	Protospacer
.*****************************.************.****

18. spacer 6.1|2926082|42|NZ_CP040886|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 7, identity: 0.833

acagcagtcggatgcggcgtaaacaccttatctgacctacgt	CRISPR spacer
acaaatgccggatgcggcgtaaacgccttatctggcctacgc	Protospacer
***.  *.****************.*********.******.

19. spacer 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT matches to NZ_MG299151 (Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***  

20. spacer 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT matches to NZ_KY471628 (Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***  

21. spacer 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT matches to NZ_MG299131 (Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***  

22. spacer 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT matches to NZ_KY471629 (Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***  

23. spacer 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT matches to NZ_MG299133 (Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***  

24. spacer 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT matches to NZ_MG299128 (Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***  

25. spacer 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT matches to NZ_MG299147 (Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***  

26. spacer 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT matches to NC_018995 (Escherichia coli plasmid pHUSEC41-1, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***  

27. spacer 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT matches to NZ_CP053235 (Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***  

28. spacer 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT matches to NZ_CP005999 (Escherichia coli B7A plasmid pEB1, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***  

29. spacer 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT matches to KU932021 (Escherichia coli plasmid pEC3I, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***  

30. spacer 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT matches to NZ_CP024154 (Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***  

31. spacer 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT matches to NC_011754 (Escherichia coli ED1a plasmid pECOED, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***  

32. spacer 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT matches to NZ_CP015141 (Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***  

33. spacer 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT matches to NZ_LR213460 (Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***  

34. spacer 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT matches to NZ_MH287044 (Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***  

35. spacer 8.13|3344710|32|NZ_CP040886|CRISPRCasFinder,CRT matches to NZ_MH618673 (Escherichia coli strain 838B plasmid p838B-R, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***  

36. spacer 9.1|3367246|31|NZ_CP040886|CRISPRCasFinder matches to NC_007336 (Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.774

ttgcccgcgcaattccgggagcatccgcaat	CRISPR spacer
tccctatcgcaatgccggcagcatccgcaat	Protospacer
*. *.  ****** **** ************

37. spacer 9.1|3367246|31|NZ_CP040886|CRISPRCasFinder matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.774

ttgcccgcgcaattccgggagcatccgcaat	CRISPR spacer
ttgcgcgcgcaattccgtgagcagcgccatc	Protospacer
**** ************ ***** *  ** .

38. spacer 9.1|3367246|31|NZ_CP040886|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

ttgcccgcgcaattccgggagcatccgcaat	CRISPR spacer
ttgcgcgcgcaattccgtgagcagcgccatc	Protospacer
**** ************ ***** *  ** .

39. spacer 9.4|3367429|31|NZ_CP040886|CRISPRCasFinder matches to NC_007336 (Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.774

ccgaacggctggcgaagcaggtggctggcgt	CRISPR spacer
ccgaacaggtggcgaagcaggtgatgggcca	Protospacer
******.* **************.. ***  

40. spacer 6.1|2926082|42|NZ_CP040886|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 8, identity: 0.81

acagcagtcggatgcggcgtaaacaccttatctgacctacgt	CRISPR spacer
attgatgtcggatgcggcgtaaacgccttatccgacctacaa	Protospacer
*. *  ******************.*******.*******. 

41. spacer 8.6|3344709|33|NZ_CP040886|PILER-CR matches to NZ_MG299151 (Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***  

42. spacer 8.6|3344709|33|NZ_CP040886|PILER-CR matches to NZ_KY471628 (Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***  

43. spacer 8.6|3344709|33|NZ_CP040886|PILER-CR matches to NZ_MG299131 (Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***  

44. spacer 8.6|3344709|33|NZ_CP040886|PILER-CR matches to NZ_KY471629 (Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***  

45. spacer 8.6|3344709|33|NZ_CP040886|PILER-CR matches to NZ_MG299133 (Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***  

46. spacer 8.6|3344709|33|NZ_CP040886|PILER-CR matches to NZ_MG299128 (Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***  

47. spacer 8.6|3344709|33|NZ_CP040886|PILER-CR matches to NZ_MG299147 (Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***  

48. spacer 8.6|3344709|33|NZ_CP040886|PILER-CR matches to NC_018995 (Escherichia coli plasmid pHUSEC41-1, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***  

49. spacer 8.6|3344709|33|NZ_CP040886|PILER-CR matches to NZ_CP053235 (Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***  

50. spacer 8.6|3344709|33|NZ_CP040886|PILER-CR matches to NZ_CP024154 (Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***  

51. spacer 8.6|3344709|33|NZ_CP040886|PILER-CR matches to NC_011754 (Escherichia coli ED1a plasmid pECOED, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***  

52. spacer 8.6|3344709|33|NZ_CP040886|PILER-CR matches to NZ_CP015141 (Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***  

53. spacer 8.6|3344709|33|NZ_CP040886|PILER-CR matches to NZ_LR213460 (Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***  

54. spacer 8.6|3344709|33|NZ_CP040886|PILER-CR matches to NZ_MH287044 (Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***  

55. spacer 8.6|3344709|33|NZ_CP040886|PILER-CR matches to NZ_MH618673 (Escherichia coli strain 838B plasmid p838B-R, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***  

56. spacer 8.6|3344709|33|NZ_CP040886|PILER-CR matches to NZ_CP005999 (Escherichia coli B7A plasmid pEB1, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***  

57. spacer 8.6|3344709|33|NZ_CP040886|PILER-CR matches to KU932021 (Escherichia coli plasmid pEC3I, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***  

58. spacer 8.12|3344649|32|NZ_CP040886|CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tcaacgcgctcagacgttgcgtgagtgaacca	CRISPR spacer
acaacgcggtcggacgttgcgtgattaccccg	Protospacer
 ******* **.************ *.  **.

59. spacer 9.4|3367429|31|NZ_CP040886|CRISPRCasFinder matches to NZ_CP036297 (Planctomycetes bacterium Pla86 plasmid pPla86_1, complete sequence) position: , mismatch: 8, identity: 0.742

ccgaacggctggcgaagcaggtggctggcgt	CRISPR spacer
agcggcagctggcgatgcaggtggcttgcgt	Protospacer
   ..*.******** ********** ****

60. spacer 9.4|3367429|31|NZ_CP040886|CRISPRCasFinder matches to NZ_CP036288 (Planctomycetes bacterium Pla133 plasmid pPla133_1, complete sequence) position: , mismatch: 8, identity: 0.742

ccgaacggctggcgaagcaggtggctggcgt	CRISPR spacer
agcggcagctggcgatgcaggtggcttgcgt	Protospacer
   ..*.******** ********** ****

61. spacer 9.4|3367429|31|NZ_CP040886|CRISPRCasFinder matches to NZ_CP015882 (Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence) position: , mismatch: 8, identity: 0.742

ccgaacggctggcgaagcaggtggctggcgt	CRISPR spacer
ttgcgcagctggcgcagcaggtggctgccga	Protospacer
..* .*.******* ************ ** 

62. spacer 9.4|3367429|31|NZ_CP040886|CRISPRCasFinder matches to NZ_CP017750 (Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

ccgaacggctggcgaagcaggtggctggcgt	CRISPR spacer
gggtacggctggcgaaggaggcggctgcgga	Protospacer
  * ************* ***.*****  * 

63. spacer 9.7|3367246|32|NZ_CP040886|PILER-CR,CRT matches to NC_007336 (Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

ttgcccgcgcaattccgggagcatccgcaatt	CRISPR spacer
tccctatcgcaatgccggcagcatccgcaatc	Protospacer
*. *.  ****** **** ************.

64. spacer 9.7|3367246|32|NZ_CP040886|PILER-CR,CRT matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.75

ttgcccgcgcaattccgggagcatccgcaatt	CRISPR spacer
ttgcgcgcgcaattccgtgagcagcgccatca	Protospacer
**** ************ ***** *  ** . 

65. spacer 9.7|3367246|32|NZ_CP040886|PILER-CR,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ttgcccgcgcaattccgggagcatccgcaatt	CRISPR spacer
ttgcgcgcgcaattccgtgagcagcgccatca	Protospacer
**** ************ ***** *  ** . 

66. spacer 9.7|3367246|32|NZ_CP040886|PILER-CR,CRT matches to NC_008759 (Polaromonas naphthalenivorans CJ2 plasmid pPNAP03, complete sequence) position: , mismatch: 8, identity: 0.75

ttgcccgcg-----caattccgggagcatccgcaatt	CRISPR spacer
-----cgtgaaactcatttccgggagcatccgcattt	Protospacer
     **.*     ** ***************** **

67. spacer 9.10|3367429|32|NZ_CP040886|PILER-CR,CRT matches to NZ_CP017750 (Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ccgaacggctggcgaagcaggtggctggcgta	CRISPR spacer
gggtacggctggcgaaggaggcggctgcggaa	Protospacer
  * ************* ***.*****  * *

68. spacer 9.10|3367429|32|NZ_CP040886|PILER-CR,CRT matches to NC_007336 (Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

ccgaacggctggcgaagcaggtggctggcgta	CRISPR spacer
ccgaacaggtggcgaagcaggtgatgggccag	Protospacer
******.* **************.. ***  .

69. spacer 9.11|3367490|32|NZ_CP040886|PILER-CR,CRT matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 8, identity: 0.75

gtttaccgccccgcagaggcgctggcagatcc	CRISPR spacer
catcatcctcccgcagatgcgctggccgatcc	Protospacer
  *.*.* .******** ******** *****

70. spacer 6.1|2926082|42|NZ_CP040886|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 9, identity: 0.786

acagcagtcggatgcggcgtaaacaccttatctgacctacgt	CRISPR spacer
gttgatgtcggatgcggcgtaaacgccttatccgacctacaa	Protospacer
.. *  ******************.*******.*******. 

71. spacer 9.1|3367246|31|NZ_CP040886|CRISPRCasFinder matches to NC_011987 (Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence) position: , mismatch: 9, identity: 0.71

ttgcccgcgcaattccgggagcatccgcaat	CRISPR spacer
gctaccgcgcaattcgaggagcatccgctgg	Protospacer
 .  *********** .*********** . 

72. spacer 9.2|3367307|31|NZ_CP040886|CRISPRCasFinder matches to CP011075 (Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

acggacaaaatatatattgatttgcgaatta	CRISPR spacer
tgaggcaaaatatagattgatttccgaaaat	Protospacer
  .*.********* ******** ****   

73. spacer 9.2|3367307|31|NZ_CP040886|CRISPRCasFinder matches to GU075905 (Prochlorococcus phage P-HM2, complete genome) position: , mismatch: 9, identity: 0.71

acggacaaaatatatattgatttgcgaatta	CRISPR spacer
acggaaaaattatatattgattttacttctg	Protospacer
***** *** *************     .*.

74. spacer 9.5|3367490|31|NZ_CP040886|CRISPRCasFinder matches to NZ_CP040723 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.71

gtttaccgccccgcagaggcgctggcagatc	CRISPR spacer
cgagaccgcctcgccgaggcgctggcagcga	Protospacer
    ******.*** *************   

75. spacer 9.10|3367429|32|NZ_CP040886|PILER-CR,CRT matches to NZ_CP036297 (Planctomycetes bacterium Pla86 plasmid pPla86_1, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaacggctggcgaagcaggtggctggcgta	CRISPR spacer
agcggcagctggcgatgcaggtggcttgcgtg	Protospacer
   ..*.******** ********** ****.

76. spacer 9.10|3367429|32|NZ_CP040886|PILER-CR,CRT matches to NZ_CP036288 (Planctomycetes bacterium Pla133 plasmid pPla133_1, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaacggctggcgaagcaggtggctggcgta	CRISPR spacer
agcggcagctggcgatgcaggtggcttgcgtg	Protospacer
   ..*.******** ********** ****.

77. spacer 9.10|3367429|32|NZ_CP040886|PILER-CR,CRT matches to NZ_CP015882 (Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaacggctggcgaagcaggtggctggcgta	CRISPR spacer
ttgcgcagctggcgcagcaggtggctgccgag	Protospacer
..* .*.******* ************ ** .

78. spacer 9.11|3367490|32|NZ_CP040886|PILER-CR,CRT matches to NZ_CP040723 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

gtttaccgccccgcagaggcgctggcagatcc	CRISPR spacer
cgagaccgcctcgccgaggcgctggcagcgac	Protospacer
    ******.*** *************   *

79. spacer 9.7|3367246|32|NZ_CP040886|PILER-CR,CRT matches to NC_011987 (Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence) position: , mismatch: 10, identity: 0.688

ttgcccgcgcaattccgggagcatccgcaatt	CRISPR spacer
gctaccgcgcaattcgaggagcatccgctggg	Protospacer
 .  *********** .*********** .  

80. spacer 9.8|3367307|32|NZ_CP040886|PILER-CR,CRT matches to CP011075 (Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

acggacaaaatatatattgatttgcgaattat	CRISPR spacer
tgaggcaaaatatagattgatttccgaaaata	Protospacer
  .*.********* ******** ****    

81. spacer 9.8|3367307|32|NZ_CP040886|PILER-CR,CRT matches to GU075905 (Prochlorococcus phage P-HM2, complete genome) position: , mismatch: 10, identity: 0.688

acggacaaaatatatattgatttgcgaattat	CRISPR spacer
acggaaaaattatatattgattttacttctgg	Protospacer
***** *** *************     .*. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 180920 : 191698 11 Enterobacteria_phage(40.0%) integrase attL 178893:178916|attR 190401:190424
DBSCAN-SWA_2 506073 : 514843 12 Salmonella_phage(90.0%) integrase attL 505743:505756|attR 514885:514898
DBSCAN-SWA_3 594426 : 621630 46 Enterobacteria_phage(47.06%) capsid,lysis,integrase,tail attL 596342:596356|attR 621704:621718
DBSCAN-SWA_4 1406072 : 1421944 19 Escherichia_phage(35.29%) capsid,integrase,tail attL 1407598:1407617|attR 1422175:1422194
DBSCAN-SWA_5 1510249 : 1516808 7 uncultured_Caudovirales_phage(16.67%) transposase NA
DBSCAN-SWA_6 1858480 : 1878526 29 Shigella_phage(37.5%) lysis,integrase attL 1849745:1849758|attR 1865092:1865105
DBSCAN-SWA_7 2328224 : 2364590 30 Stx2-converting_phage(45.45%) integrase,transposase attL 2323647:2323670|attR 2364890:2364913
DBSCAN-SWA_8 3375036 : 3388219 12 Escherichia_phage(50.0%) NA NA
DBSCAN-SWA_9 3746219 : 3790394 63 Enterobacteria_phage(47.46%) holin,integrase,lysis,terminase,portal,head attL 3743739:3743755|attR 3793649:3793665
DBSCAN-SWA_10 4038034 : 4047476 10 Enterobacteria_phage(85.71%) NA NA
DBSCAN-SWA_11 4692223 : 4716004 27 Enterobacteria_phage(26.32%) lysis,integrase,tail attL 4687689:4687703|attR 4712244:4712258
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP040885
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 86975 : 114977 33 Stx2-converting_phage(42.86%) transposase,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP040884
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 13836 19 Lactococcus_phage(16.67%) NA NA
DBSCAN-SWA_2 27575 : 30934 3 Salmonella_phage(50.0%) transposase NA
DBSCAN-SWA_3 50418 : 55054 5 Rhizobium_phage(25.0%) NA NA
DBSCAN-SWA_4 61642 : 74053 13 Salmonella_phage(33.33%) integrase,transposase attL 70076:70089|attR 75775:75788
DBSCAN-SWA_5 90230 : 92217 2 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_6 98519 : 100404 2 Gordonia_phage(50.0%) integrase attL 94737:94749|attR 102594:102606
DBSCAN-SWA_7 103563 : 105075 1 Pseudoalteromonas_phage(100.0%) NA NA
DBSCAN-SWA_8 112403 : 116150 7 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_9 120053 : 121169 1 unidentified_phage(100.0%) NA NA
DBSCAN-SWA_10 124809 : 130654 11 Wolbachia_phage(25.0%) NA NA
DBSCAN-SWA_11 134284 : 138277 5 Pseudomonas_phage(50.0%) NA NA
DBSCAN-SWA_12 142737 : 143676 1 Yersinia_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage