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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP032472 Helicobacter pylori strain 479-A2-EK4 chromosome, complete genome 7 crisprs cas4,cas3,DEDDh 2 2 0 0

Results visualization

1. NZ_CP032472
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP032472_1 270480-270549 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP032472_2 329334-329411 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP032472_3 419927-420012 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP032472_4 581386-581583 Orphan I-B
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP032472_5 614364-614433 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP032472_6 1178760-1178903 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP032472_7 1397280-1397357 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP032472_1 1.1|270504|22|NZ_CP032472|CRISPRCasFinder 270504-270525 22 NZ_CP032472.1 270536-270557 1 0.955
NZ_CP032472_1 1.1|270504|22|NZ_CP032472|CRISPRCasFinder 270504-270525 22 NZ_CP032472.1 614420-614441 1 0.955
NZ_CP032472_5 5.1|614388|22|NZ_CP032472|CRISPRCasFinder 614388-614409 22 NZ_CP032472.1 270536-270557 1 0.955
NZ_CP032472_5 5.1|614388|22|NZ_CP032472|CRISPRCasFinder 614388-614409 22 NZ_CP032472.1 614420-614441 1 0.955
NZ_CP032472_1 1.1|270504|22|NZ_CP032472|CRISPRCasFinder 270504-270525 22 NZ_CP032472.1 270817-270838 2 0.909
NZ_CP032472_1 1.1|270504|22|NZ_CP032472|CRISPRCasFinder 270504-270525 22 NZ_CP032472.1 614631-614652 2 0.909
NZ_CP032472_1 1.1|270504|22|NZ_CP032472|CRISPRCasFinder 270504-270525 22 NZ_CP032472.1 1197241-1197262 2 0.909
NZ_CP032472_5 5.1|614388|22|NZ_CP032472|CRISPRCasFinder 614388-614409 22 NZ_CP032472.1 270817-270838 2 0.909
NZ_CP032472_5 5.1|614388|22|NZ_CP032472|CRISPRCasFinder 614388-614409 22 NZ_CP032472.1 614631-614652 2 0.909
NZ_CP032472_5 5.1|614388|22|NZ_CP032472|CRISPRCasFinder 614388-614409 22 NZ_CP032472.1 1197241-1197262 2 0.909

1. spacer 1.1|270504|22|NZ_CP032472|CRISPRCasFinder matches to position: 270536-270557, mismatch: 1, identity: 0.955

aagggatttcttttttaaaact	CRISPR spacer
aaggcatttcttttttaaaact	Protospacer
**** *****************

2. spacer 1.1|270504|22|NZ_CP032472|CRISPRCasFinder matches to position: 614420-614441, mismatch: 1, identity: 0.955

aagggatttcttttttaaaact	CRISPR spacer
aaggcatttcttttttaaaact	Protospacer
**** *****************

3. spacer 5.1|614388|22|NZ_CP032472|CRISPRCasFinder matches to position: 270536-270557, mismatch: 1, identity: 0.955

aagggatttcttttttaaaact	CRISPR spacer
aaggcatttcttttttaaaact	Protospacer
**** *****************

4. spacer 5.1|614388|22|NZ_CP032472|CRISPRCasFinder matches to position: 614420-614441, mismatch: 1, identity: 0.955

aagggatttcttttttaaaact	CRISPR spacer
aaggcatttcttttttaaaact	Protospacer
**** *****************

5. spacer 1.1|270504|22|NZ_CP032472|CRISPRCasFinder matches to position: 270817-270838, mismatch: 2, identity: 0.909

aagggatttcttttttaaaact	CRISPR spacer
aagggatttctttttttgaact	Protospacer
**************** .****

6. spacer 1.1|270504|22|NZ_CP032472|CRISPRCasFinder matches to position: 614631-614652, mismatch: 2, identity: 0.909

aagggatttcttttttaaaact	CRISPR spacer
aagggatttctttttttgaact	Protospacer
**************** .****

7. spacer 1.1|270504|22|NZ_CP032472|CRISPRCasFinder matches to position: 1197241-1197262, mismatch: 2, identity: 0.909

aagggatttcttttttaaaact	CRISPR spacer
aaggggtttctttttttaaact	Protospacer
*****.********** *****

8. spacer 5.1|614388|22|NZ_CP032472|CRISPRCasFinder matches to position: 270817-270838, mismatch: 2, identity: 0.909

aagggatttcttttttaaaact	CRISPR spacer
aagggatttctttttttgaact	Protospacer
**************** .****

9. spacer 5.1|614388|22|NZ_CP032472|CRISPRCasFinder matches to position: 614631-614652, mismatch: 2, identity: 0.909

aagggatttcttttttaaaact	CRISPR spacer
aagggatttctttttttgaact	Protospacer
**************** .****

10. spacer 5.1|614388|22|NZ_CP032472|CRISPRCasFinder matches to position: 1197241-1197262, mismatch: 2, identity: 0.909

aagggatttcttttttaaaact	CRISPR spacer
aaggggtttctttttttaaact	Protospacer
*****.********** *****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP032472_4 4.1|581413|27|NZ_CP032472|CRISPRCasFinder 581413-581439 27 NZ_CP034186 Deinococcus sp. S14-83 strain S14-83T plasmid unnamed2, complete sequence 116558-116584 3 0.889
NZ_CP032472_4 4.1|581413|27|NZ_CP032472|CRISPRCasFinder 581413-581439 27 NZ_CP022727 Erwinia persicina strain B64 plasmid pEP2, complete sequence 67408-67434 4 0.852
NZ_CP032472_4 4.2|581467|30|NZ_CP032472|CRISPRCasFinder 581467-581496 30 NC_014719 Caldicellulosiruptor kristjanssonii I77R1B plasmid pCALKR01, complete sequence 8121-8150 6 0.8

1. spacer 4.1|581413|27|NZ_CP032472|CRISPRCasFinder matches to NZ_CP034186 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.889

-agtgtcgttattaaagctggcgttgcc	CRISPR spacer
cagt-tcgttattaaagctggggctgcc	Protospacer
 *** **************** *.****

2. spacer 4.1|581413|27|NZ_CP032472|CRISPRCasFinder matches to NZ_CP022727 (Erwinia persicina strain B64 plasmid pEP2, complete sequence) position: , mismatch: 4, identity: 0.852

agtgtcgttattaaagctggcgttgcc	CRISPR spacer
gctgtcggtattaacgctggcgttgcc	Protospacer
. ***** ****** ************

3. spacer 4.2|581467|30|NZ_CP032472|CRISPRCasFinder matches to NC_014719 (Caldicellulosiruptor kristjanssonii I77R1B plasmid pCALKR01, complete sequence) position: , mismatch: 6, identity: 0.8

----agcactgtcattaaaagcagattgagtgct	CRISPR spacer
gattagc----tcattcaaagctgattgagtgct	Protospacer
    ***    ***** ***** ***********

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage