CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP032473	Helicobacter pylori strain 476-A2-EK2 chromosome, complete genome	3 crisprs	cas14j,DEDDh,csx1,cas3	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP032473_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP032473_1

445698-445783

TypeV

Consensus_repeat	Method
GTTCTTGAACCACTACTTCTCGCATG	CRISPRCasFinder

1 spacers

cas14j

The CRISPR arrays of NZ_CP032473_1

>merge|NZ_CP032473|1|445698-445783|CRISPRCasFinder
GTTCTTGAACCACTACTTCTCGCATGCCCATGCAGAGATCAAAGAAAACTCCCTTGAAGCGTTCTTGAACCACTACTTCTCGCATG

>NZ_CP032473|1|1|445698-445783|CRISPRCasFinder
GTTCTTGAACCACTACTTCTCGCATG	CCCATGCAGAGATCAAAGAAAACTCCCTTGAAGC
GTTCTTGAACCACTACTTCTCGCATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP032473.1\|WP_139541775.1\|445961_447008_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl\|CDD\|176186
NZ_CP032473.1\|WP_139541783.1\|454324_455608_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	cas14j	-	gnl\|CDD\|223747
NZ_CP032473.1\|WP_139541782.1\|453826_454255_-\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|376616
NZ_CP032473.1\|WP_139541781.1\|452753_453626_+\|Sel1-like-repeat-protein-HcpC	unknown	unknown	gnl\|CDD\|223861
NZ_CP032473.1\|WP_139541779.1\|450212_452039_+\|phosphogluconate-dehydratase	unknown	unknown	gnl\|CDD\|130264
NZ_CP032473.1\|WP_139541770.1\|436730_437564_-\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|280099
NZ_CP032473.1\|WP_139541780.1\|452057_452684_+\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	unknown	unknown	gnl\|CDD\|273490
NZ_CP032473.1\|WP_000238157.1\|439059_440004_-\|pyruvate-ferredoxin-oxidoreductase-subunit-beta	unknown	unknown	gnl\|CDD\|239471
NZ_CP032473.1\|WP_139541776.1\|447177_448188_-\|glucokinase	unknown	unknown	gnl\|CDD\|129832
NZ_CP032473.1\|WP_139542553.1\|455564_455885_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032473.1\|WP_139541771.1\|440016_441240_-\|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181999
NZ_CP032473.1\|WP_139541773.1\|443164_444472_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032473.1\|WP_139541772.1\|442495_443158_+\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|280099
NZ_CP032473.1\|WP_000486466.1\|441657_442218_-\|pyruvate-flavodoxin-oxidoreductase-subunit-gamma	unknown	unknown	gnl\|CDD\|180284
NZ_CP032473.1\|WP_139541777.1\|448174_448858_-\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|273494
NZ_CP032473.1\|WP_128046401.1\|437628_438951_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|181437
NZ_CP032473.1\|WP_000656174.1\|441249_441642_-\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|236596
NZ_CP032473.1\|WP_139541768.1\|433923_434703_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032473.1\|WP_139541769.1\|434743_436720_+\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NZ_CP032473.1\|WP_139541778.1\|448869_450147_-\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223441

Protein	Function_ID	Function_description	E-value
NZ_CP032473.1\|WP_139541775.1\|445961_447008_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	8.66473e-162
NZ_CP032473.1\|WP_139541783.1\|454324_455608_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.71596e-63
NZ_CP032473.1\|WP_139541782.1\|453826_454255_-\|IS200/IS605-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	7.87281e-40
NZ_CP032473.1\|WP_139541781.1\|452753_453626_+\|Sel1-like-repeat-protein-HcpC	gnl\|CDD\|223861	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].	3.51871e-47
NZ_CP032473.1\|WP_139541779.1\|450212_452039_+\|phosphogluconate-dehydratase	gnl\|CDD\|130264	TIGR01196, Phosphogluconate_dehydratase, 6-phosphogluconate dehydratase. A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This model includes mocB above the trusted cutoff, although the designation is somewhat tenuous. [Energy metabolism, Entner-Doudoroff].	0
NZ_CP032473.1\|WP_139541770.1\|436730_437564_-\|outer-membrane-beta-barrel-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	4.38616e-34
NZ_CP032473.1\|WP_139541780.1\|452057_452684_+\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	gnl\|CDD\|273490	TIGR01182, KHG/KDPG_aldolase_., Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida [Amino acid biosynthesis, Glutamate family, Energy metabolism, Entner-Doudoroff].	1.50037e-112
NZ_CP032473.1\|WP_000238157.1\|439059_440004_-\|pyruvate-ferredoxin-oxidoreductase-subunit-beta	gnl\|CDD\|239471	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.	3.89415e-136
NZ_CP032473.1\|WP_139541776.1\|447177_448188_-\|glucokinase	gnl\|CDD\|129832	TIGR00749, Glucokinase_Glucose_kinase., glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models. [Energy metabolism, Glycolysis/gluconeogenesis].	0
NZ_CP032473.1\|WP_139541771.1\|440016_441240_-\|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha	gnl\|CDD\|181999	PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha.	0
NZ_CP032473.1\|WP_139541772.1\|442495_443158_+\|outer-membrane-beta-barrel-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	2.44799e-36
NZ_CP032473.1\|WP_000486466.1\|441657_442218_-\|pyruvate-flavodoxin-oxidoreductase-subunit-gamma	gnl\|CDD\|180284	PRK05844, PRK05844, pyruvate flavodoxin oxidoreductase subunit gamma; Validated.	3.48516e-128
NZ_CP032473.1\|WP_139541777.1\|448174_448858_-\|6-phosphogluconolactonase	gnl\|CDD\|273494	TIGR01198, 6-phosphogluconolactonase_6PGL., 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with [Energy metabolism, Pentose phosphate pathway].	1.68521e-96
NZ_CP032473.1\|WP_128046401.1\|437628_438951_-\|adenylosuccinate-lyase	gnl\|CDD\|181437	PRK08470, PRK08470, adenylosuccinate lyase; Provisional.	0
NZ_CP032473.1\|WP_000656174.1\|441249_441642_-\|4Fe-4S-binding-protein	gnl\|CDD\|236596	PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta; Reviewed.	5.72644e-84
NZ_CP032473.1\|WP_139541769.1\|434743_436720_+\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP032473.1\|WP_139541778.1\|448869_450147_-\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|223441	COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism].	0

>NZ_CP032473.1|WP_139541773.1|443164_444472_-|hypothetical-protein
MIFLKKSLCALLFSGFLIPPLMKAASFVYDLKFMSFNFNLASPPNNPYWNSLTKMQTRLMPQIGVQLDKRQALMFGAWFIQNLHTHYSYFPYSWGVTMYYQYIGKNLRFFLGIVPRSYQIGHYPLSAFKKLFWFIDPTFRGGAFQFKPAYDPNRWWNGWFEGVVDWYGGRNWNNQPKKKNYDFDQFLYFVSSEFQFLKGYLGLGGQLVVFHNASHHSMGNNYPYGGNSYLKPGDITPQWPNGYPYFSQKNNPQGGEIGKYSNPTILDRVYYHAYLKADFKNLMPYMDNIFMTFGTQSSQTHYCVRHASECKNARFYNSFGGEFYAQAQYKGFGIFNRYYFSNKPQMHFYATYGQSLYTGLPWYRAPNFDMIGLYYVYKNKWISVRADAFFNFLGGGDGYHLYGKGGKWITTYQQFLTLTIDTRELIDFVKSKTSK
>NZ_CP032473.1|WP_139541772.1|442495_443158_+|outer-membrane-beta-barrel-protein
MDKTMVKILMGMALLSSLQATEADLDEKSKKPKFADRNTFYLGVGYQLSAINTSFSTESVDKSYFMTGNGFGVVLGGKFVAKTQAVEHVGFRYGLFYDQTFSSHKSYISTYGLEFSGLWDAFNSPKMFLGLEFGLGIAGATYMPGGAMHGIIAQNLGKENSLFQLLVKVGFRFGFFHNEITFGLKFPVIPNKRTEIIDGLSTTTLWHRLPVAYFNYIYNF
>NZ_CP032473.1|WP_000486466.1|441657_442218_-|pyruvate-flavodoxin-oxidoreductase-subunit-gamma
MFQIRWHARAGQGAITGAKGLADVISKTGKEVQAFASYGSAKRGAAMMAYNRVDDEPILNHERFMQPDYVLVIDPGLVFIENIFANEKEDTTYIITSYLNKEELFEKKPELKTRKVFLVDCLKISMETLKRPIPNTPMLGALMKVSGMLEIEAFKEAFKKVLGKKLTQEVIDANMLAIQRAYEEVQ
>NZ_CP032473.1|WP_000656174.1|441249_441642_-|4Fe-4S-binding-protein
MKDWNEFEMGAVLFPFEKNAQSEMEKHNDERHYTEQSYFTTSVAHWRVAKPVHNNNICINCFNCWVYCPDAAILSREGKLKGVDYSHCKGCGVCVDVCPTNPKSLWMFEEQIEPATALTQWPQKQEKKKS
>NZ_CP032473.1|WP_139541771.1|440016_441240_-|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha
MARSIELQEIEVWDGNTASSNALRQAQIDVIAAYPITPSTPIVQNYGSFKDNGYIDGEFVLVESEHAAMSACVGAAAAGGRVSTATSSQGLALMVEVLYQASGMRLPIVLNLVNRALAAPLNIHGDHSDMYLSRDSGWISLCTCNPQEAYDFTLMAFKIAEHQKVRVPTIVNQDGFLCSHTVQNVRPLSDAVAYQFVGEYQTKHSLLDFDKPVSYGAQAEEEWHYEHKAQLHHAIMSASSVIEEVFNDFAKLTGRQYHLTKTFQLEDAEIAIFALGTTYESAIVAAKEMRKKGIKAGVATIHSLRPFPYERLGQDLKNLKALAILDKSSPAGAMGAMFNEVTSAVYQTQGTKHPVVSNYIYGLGERDMTIAHLCEIFEEINEDALKGMLTHPTQQFVGLRGPKMSFF
>NZ_CP032473.1|WP_000238157.1|439059_440004_-|pyruvate-ferredoxin-oxidoreductase-subunit-beta
MVKEVKTLKGFSQSAEKFQGSHLLCPGCGHGIIVREVLNAVDGPIVLGNSTGCLEVCSAVYPHTSWDVPWIHIGFENGSTAISGVEAMYKALVNKGRYQGQKPKFVAFGGDGASYDIGLQFISGCMERGHDMTYICLDNENYANTGGQRSGSTPLGASTSTTPAGSVSFGKKEKKKDIVNIMASHGVPYVAQLSPNKWKDMNKKIKTALDTEGPCFINALSPCTTEWKFDSNKTIELADMAVDSLMFPLFEIFNGRELKITYRPRNIIPVRDYLGAQKRFKHLFKKENEHIIEELQKDVNERWEYLQRREEAKV
>NZ_CP032473.1|WP_128046401.1|437628_438951_-|adenylosuccinate-lyase
MLERYANEEMKALWNEQTKFETYLEVEKAVVRAWNKLGQIQDSDCEKICSKAAFNLERIKEIEKTTKHDLIAFTTCVAESLGEESRFFHYGITSSDCIDTAMALLMTKSLKLIQKGVKNLYETLKNRALEHKDTLMVGRSHGVFGEPITFGLVLALFADEIKRHLKALDLTMEFISVGAISGAMGNFAHAPLELEELACEFLGLKTANINNQVIQRDRYARLACDLALLASSCEKIAVNIRHLQRSEVYEVEEAFSTGQKGSSAMPHKRNPILSENITGLCRVIRSFTTPMLENVALWHERDMSHSSVERFALPDLFITSDFMLSRLNSVIENLVVYPKNMLKNLALSGGLVFSQRVLLELPKKGLSREESYSIVQENAMKIWEVLQQGAFKNADENLFLNALLNDERLKKYLSEDEIKACFDYSYYTKNVGAIFKRVFE
>NZ_CP032473.1|WP_139541770.1|436730_437564_-|outer-membrane-beta-barrel-protein
MKRALYLILGLSYALHADSFKDVLTKGDYTFFNKKVVSPIKRYADRSVFYLGLGYQLGSIQHNYSNLNLSQQFNKSQIIFSDGLSPVFKNSYVSNGLGVQAGYKWVGKHEETKWFGFRWGLFYDLSASLYGQKESQSIIISTYGTYMDLLLNAYNGDKFFAGFNLGIAFAGVYDKVSNELLYQALLLDTFGGKVDSNGFQFLVNLGVRLGNKRNQFGFGIKIPTYYFNHYYSMNNISNNSGDVLKVLRFLEYGINSLLYQVDFRRNYSVYFNYTYSF
>NZ_CP032473.1|WP_139541769.1|434743_436720_+|excinuclease-ABC-subunit-B
MPLFDLKSPYPPAGDQPQAIEALAKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKGFLLKLVEMGYSRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVMLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGLLDPKFEVRDSDKQVQDLFDEIKSVVARDERVLITTLTKKMAEELCKYYTEWGLKARYMHSEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQLRTL
>NZ_CP032473.1|WP_139541768.1|433923_434703_+|hypothetical-protein
MNYPNLPNSALEITSQPEVKEITNELLKQLQSALKSNALFTEQVELSLKGIVRILEVLLSLDFFKNANEIDSSLRNSIEWLNNAGESLKNKMKEYEGFFSEFNTSMKANEQEVTNTLNANAENIKSEIKKLENQLIETTTKLLTSYQIFLNQARENATTQITANQTQAITNINEAKENANNEITENKTASLEAIKEAKTTANNEISEKQTQAINNINEAKDNANNQITANKTQAITNINEAKNQSLSKTLIFLRLNKAC
>NZ_CP032473.1|WP_139541775.1|445961_447008_-|alcohol-dehydrogenase-catalytic-domain-containing-protein
MRVQSKGFAIFSKDGHFKPHDFSRHAVGPKDVLIDILYAGICHSDVHSAYSEWKEGIYPMVPGHEIAGVIKEVGKEVKKFKVGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHGNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYDLKDYLKLLTYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKVYGSLIGGIKETQEMMDFSIKHNIYPEVDLILGKDIDTAYHNLTHGKAKFRYVIDMKKSFD
>NZ_CP032473.1|WP_139541776.1|447177_448188_-|glucokinase
MPKTETYPRLLADIGGTNARFGLEVAPRQIECIEVLRCEDFESLSDAVRFYLSRCKESLKLHPIYGSFAVATPIMGDFVQMTNNHWTFSIETTRQCLTLKKLLVINDFVAQAYAISAMQENDLAQIGGIKCEINAPKAILGPGTGLGVSTLIQNSDGSLKVLPGEGGHVSFAPFDDLEILVWQYARSKFNHVSAERFLSGSGLVLIYEALSKRKGLEKVAKLSKAELTPQIISERALNGDYPICRLTLDTFCSMLGTLAADVALTLGARGGVYLCGGIIPRFIDYFKTSPFRARFETKGRMGAFLASIPVHVVMKKTPGLDGAGIALENYLLHDKI
>NZ_CP032473.1|WP_139541777.1|448174_448858_-|6-phosphogluconolactonase
MGYQLFEFENLKDCHKALIERFKEFFNTALKKHHQVSIAFSGGRSPIGLLQKLSVLNLKWHECLISLVDERIIDTSHDDSNTKLLHDYLLQNNALKASFIPLLPKKISSDTNALFNFANQHFKQPHLAILGMGTDGHTASLFPETSAFLNEEKENIVLTKPINAPYERLSMSVNALENCEKLFLSVSGVEKREVLEKALKENAPYSLPIARILHSQKVTTEVFYAKN
>NZ_CP032473.1|WP_139541778.1|448869_450147_-|glucose-6-phosphate-dehydrogenase
MLDFDLVLFGATGDLAMRKLFVSLYEIYTHYGFKKDSKIIASGRKELSNEEFLALLCEKTQLHSREKGEEFLAHISYFCVRLDNPKDFEELSKIATKDKPLIFYFSISPSFFATTAQNLAKNALNHANTRLILEKPLGHDLKTCREIFQSISAFFKEEQIFRIDHYLGKKGVQNILELRRNNPILNILWDQISAVEICVYETLGVEERGEFYDKIGALRDMVQNHLLQVLSLIATDLPNDLKDLRKEKIKVLKTLQPPKDFKKQVIRAQYQGYRDENKVHKESQTETFVAIKAFLDTPKFKGVPFYLKHAKKMPHNQASVKIHFNAINTLEFFLSQDKITLTLQDHQNPLILETHNKQEFLQPYAKLLYDAIQNNHNNFAHQLELEASWVFIDTLIEGFINNATPLYSYESHNLNESEFLKPLYQ
>NZ_CP032473.1|WP_139541779.1|450212_452039_+|phosphogluconate-dehydratase
MPKHSLEQIKEKITERSKKTRELYLENIFNPKNQPKIESLGCANIAHVTASMPEHLKMPLGSHKRKHFAIITAYNDMLSAHQPFKNYPDWIKKELQEHNAYASVASGVPAMCDGITQGYDGMELSLFSRDVIALSTAVGLSHNVFDGAFFLGVCDKIVPGLLIGALSFGNLASVFVPSGPMVSGIENYKKAKARQDFAMGKINREELLKVEMQSYHDVGTCTFYGTANSNQMMMEFMGLHVANSSFINPNNPLRKVLVEESAKRLASGKILPLAKLIDEKSILNALIGLMATGGSTNHTLHLIAIARSCGVILNWDDFDAVSNLIPLLAKVYPNGSADVNAFEACGGLVFVIKELLKEGLLFEDTHTIMDTETQKGMQNYTKTPFLENDQLVYKDAVNHSLNTDILRPVSEPFAANGGLKILKGNLGRAVIKISAIKDEHRKVKARAIVFKTQSEFLERFKNKELERDFVAVLPFQGPKSNGMPELHKLTTNLGALQDMGYKVALVTDGRMSGASGKVPSAIHLSPEGALNGAIIKIKDGDWIELDAPNNALNVLEKDFENRGINPLFLETLENLEKPSFGLGRELFTSLRLNVNTAEEGGMSFGIKV
>NZ_CP032473.1|WP_139541780.1|452057_452684_+|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase
MQDKIIEVLQISPIVPVVVVEDIKDAVPLAQSLIEGGIPIIEVTLRSSCALEAIELIAKNVPKMRVGAGTILNPTQLEQAQNRGAEFLISPGLTIELLEHAKKKDMPLIPGVSSSSEVMQALELGYHALKFFPAEYCGGVKLLNAFNGPFKGVKFCPTGGISADNMRSYLNLENVLCVGGSWLTPKNLIQNKEWDKITEICKRALALR
>NZ_CP032473.1|WP_139541781.1|452753_453626_+|Sel1-like-repeat-protein-HcpC
MLENVKKSLFRVLCLGALCLGGLMAEQDPKELVGLGAKSYKEQDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKMVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGAPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGDGVAKNFKEALDRYSKACEMQNGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILKQLKIKV
>NZ_CP032473.1|WP_139541782.1|453826_454255_-|IS200/IS605-family-transposase
MRKNHYPLRGYISTNRSKHNLKAHLILVCKYRKKLLQGDLNNFIKSVIDEIATQSNLIIIAMESDIDHLHLMVQYIPRMSISSIIAKIKQITTYRVWCDKRFIPLLQKHFWKEKTFWTDGFFACSIDEANPETIKAYIENQG
>NZ_CP032473.1|WP_139541783.1|454324_455608_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MLNAIKFRIYPNAQQKELISKHFGCSRVVYNYFLDYRQKQYAKGIKETYFTMQKVLTQIKRQEKYHYLNECNSQSLQMALRQLVSAYDNFFSKRARYPKFKSKKNAKQSFAIPQNIEIKTETQTIALPKFKEGIKAKLHRDLPKDSVIKQAFISCIADQYFCSLSYETKEPIPKPTIIKKAVGLDMGLRTLIVTSDKIEYPHIRFYQKLEKKLTKAQRRLSKKVKGSNNRKKQAKKVSRLHLACSNTRDDYLHKISNEITNQYDLIGVETLNIKALMKTYHSKSLANASWGKFLAMLEYKAQRKGKTLLRIDRFFPSSQLCSYCGVNTGKKHESITKFTCPHCKTTHHRDYNASVNIRNYALGMLDDRHKVKTDKARVGIIRSDYTHHANECVKACGASSNGVSSKYGNILDLASYGAMKQEKAQSL
>NZ_CP032473.1|WP_139542553.1|455564_455885_-|hypothetical-protein
MIGTCLNAYEKDNELWALAKIYDIEAVLDLLNNEKSTSPAVYCYYEKDNAVIVDKPMLLNHLAIVEQGHWDKKDRNSIDNSKINILDLNYPTAKAIGLFLASSLHN

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Crispr_ID: NZ_CP032473_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP032473_2

754557-754648

Orphan

Consensus_repeat	Method
TCGTTTTTAGTCTCGGTTTCTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP032473_2

>merge|NZ_CP032473|2|754557-754648|CRISPRCasFinder
TCGTTTTTAGTCTCGGTTTCTAACCCATGGTTTTTATGGAGTTTGTAAAACTTTTTACTACTTTTTTTTTCGCTTTTAGTCTCGGTTTCTAA

>NZ_CP032473|2|2|754557-754648|CRISPRCasFinder
TCGTTTTTAGTCTCGGTTTCTAA	CCCATGGTTTTTATGGAGTTTGTAAAACTTTTTACTACTTTTTTTT
TCGCTTTTAGTCTCGGTTTCTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP032473.1\|WP_139541955.1\|755479_756403_+\|outer-inflammatory-protein-OipA	unknown	unknown	gnl\|CDD\|280099
NZ_CP032473.1\|WP_139541950.1\|747890_748475_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225158
NZ_CP032473.1\|WP_139541956.1\|756469_757156_-\|7-cyano-7-deazaguanine-synthase-QueC	unknown	unknown	gnl\|CDD\|129461
NZ_CP032473.1\|WP_139541958.1\|758592_759105_+\|NAD(P)-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224995
NZ_CP032473.1\|WP_139541953.1\|752757_754296_+\|protein-hydE	unknown	unknown	gnl\|CDD\|180578
NZ_CP032473.1\|WP_003015914.1\|742208_743288_+\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|377382
NZ_CP032473.1\|WP_139541961.1\|761893_763576_+\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|381604
NZ_CP032473.1\|WP_120872121.1\|754850_755303_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032473.1\|WP_139542561.1\|759121_759451_+\|NAD-binding-protein	unknown	unknown	gnl\|CDD\|224995
NZ_CP032473.1\|WP_139541951.1\|749799_751536_+\|nickel-dependent-hydrogenase-large-subunit	unknown	unknown	gnl\|CDD\|366057
NZ_CP032473.1\|WP_000373527.1\|759452_760106_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380324
NZ_CP032473.1\|WP_139541959.1\|760270_761590_+\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|237094
NZ_CP032473.1\|WP_139541957.1\|757218_758427_+\|CCA-tRNA-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|223690
NZ_CP032473.1\|WP_139541952.1\|751548_752223_+\|Ni/Fe-hydrogenase,-b-type-cytochrome-subunit	unknown	unknown	gnl\|CDD\|224880
NZ_CP032473.1\|WP_078267308.1\|752219_752756_+\|hydrogenase-biosynthesis-protein-HydD	unknown	unknown	gnl\|CDD\|99873
NZ_CP032473.1\|WP_139541960.1\|761586_761880_+\|YggT-family-protein	unknown	unknown	gnl\|CDD\|223833
NZ_CP032473.1\|WP_139541949.1\|745798_747844_+\|DUF262-domain-containing-protein	unknown	unknown	gnl\|CDD\|224396
NZ_CP032473.1\|WP_108388677.1\|748635_749790_+\|hydrogenase-1-small-subunit	unknown	unknown	gnl\|CDD\|273053
NZ_CP032473.1\|WP_139541948.1\|744507_745566_+\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|223861
NZ_CP032473.1\|WP_139541947.1\|743290_744496_+\|2,3,4,5-tetrahydropyridine-2,6-carboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|225082

Protein	Function_ID	Function_description	E-value
NZ_CP032473.1\|WP_139541955.1\|755479_756403_+\|outer-inflammatory-protein-OipA	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	7.36055e-34
NZ_CP032473.1\|WP_139541950.1\|747890_748475_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|225158	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only].	3.7446e-54
NZ_CP032473.1\|WP_139541956.1\|756469_757156_-\|7-cyano-7-deazaguanine-synthase-QueC	gnl\|CDD\|129461	TIGR00364, 7-cyano-7-deazaguanine_synthase, queuosine biosynthesis protein QueC. Members of this protein family are QueC, involved in synthesizing pre-Q0 from GTP en route to tRNA modification with queuosine. This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti, the gene was designated exsB, possibly because of polar effects on exsA expression in a shared polycistronic mRNA. In Arthrobacter viscosus, the homologous gene was designated ALU1 and was associated with an aluminum tolerance phenotype. [Unknown function, General].	1.17799e-110
NZ_CP032473.1\|WP_139541958.1\|758592_759105_+\|NAD(P)-binding-domain-containing-protein	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	3.44547e-51
NZ_CP032473.1\|WP_139541953.1\|752757_754296_+\|protein-hydE	gnl\|CDD\|180578	PRK06466, PRK06466, acetolactate synthase 3 large subunit.	0.0027613
NZ_CP032473.1\|WP_003015914.1\|742208_743288_+\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	gnl\|CDD\|377382	pfam04551, GcpE, GcpE protein. In a variety of organisms, including plants and several eubacteria, isoprenoids are synthesized by the mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway. Although different enzymes of this pathway have been described, the terminal biosynthetic steps of the MEP pathway have not been fully elucidated. GcpE gene of Escherichia coli is involved in this pathway.	0
NZ_CP032473.1\|WP_139541961.1\|761893_763576_+\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|381604	cd13401, Slt70-like, 70kDa soluble lytic transglycosylase (Slt70) and similar proteins. Catalytic domain of the 70kda soluble lytic transglycosylase (LT)-like proteins, which also have an N-terminal U-shaped U-domain and a linker L-domain. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda.	1.1413e-51
NZ_CP032473.1\|WP_139541957.1\|757218_758427_+\|CCA-tRNA-nucleotidyltransferase	gnl\|CDD\|223690	COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis].	3.38625e-93
NZ_CP032473.1\|WP_139541951.1\|749799_751536_+\|nickel-dependent-hydrogenase-large-subunit	gnl\|CDD\|366057	pfam00374, NiFeSe_Hases, Nickel-dependent hydrogenase.	0
NZ_CP032473.1\|WP_000373527.1\|759452_760106_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|380324	cd02149, NfsB-like, nitroreductase similar to Escherichia coli NfsB. NAD(P)H:FMN oxidoreductase family. This domain catalyzes the reduction of flavin, nitrocompound, quinones and azo compounds using NADH or NADPH as an electron donor. The enzyme is a homodimer, and each monomer binds a FMN as co-factor. This family includes FRase I in Vibrio fischeri, wihich reduces FMN into FMNH2 as part of the bioluminescent reaction. The family also includes oxygen-insensitive nitroreductases that use NADH or NADPH as an electron donor in the ping pong bi bi mechanism. This type of nitroreductase can be used in cancer chemotherapy to activate a range of prodrugs.	1.35777e-71
NZ_CP032473.1\|WP_139541959.1\|760270_761590_+\|glutamate--tRNA-ligase	gnl\|CDD\|237094	PRK12410, PRK12410, glutamylglutaminyl-tRNA synthetase; Provisional.	0
NZ_CP032473.1\|WP_139542561.1\|759121_759451_+\|NAD-binding-protein	gnl\|CDD\|224995	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism].	3.55171e-26
NZ_CP032473.1\|WP_139541952.1\|751548_752223_+\|Ni/Fe-hydrogenase,-b-type-cytochrome-subunit	gnl\|CDD\|224880	COG1969, HyaC, Ni,Fe-hydrogenase I cytochrome b subunit [Energy production and conversion].	7.46194e-95
NZ_CP032473.1\|WP_078267308.1\|752219_752756_+\|hydrogenase-biosynthesis-protein-HydD	gnl\|CDD\|99873	cd06062, H2MP_MemB-H2up, Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.	1.62015e-56
NZ_CP032473.1\|WP_139541960.1\|761586_761880_+\|YggT-family-protein	gnl\|CDD\|223833	COG0762, COG0762, Predicted integral membrane protein [Function unknown].	5.31221e-07
NZ_CP032473.1\|WP_139541949.1\|745798_747844_+\|DUF262-domain-containing-protein	gnl\|CDD\|224396	COG1479, COG1479, Uncharacterized conserved protein [Function unknown].	3.23493e-36
NZ_CP032473.1\|WP_108388677.1\|748635_749790_+\|hydrogenase-1-small-subunit	gnl\|CDD\|273053	TIGR00391, small_subunit, hydrogenase (NiFe) small subunit (hydA). Called (hupA/hydA/hupS/hoxK/vhtG) Involved in hydrogenase reactions performing different specific functions in different species eg (EC 1.12.2.1) in Desulfovibrio gigas,(EC 1.12.99.3) in Wolinella succinogenes and (EC 1.18.99.1) in E.coli and a number of other species and (EC 1.12.99.-) in the archea. [Energy metabolism, Electron transport].	0
NZ_CP032473.1\|WP_139541948.1\|744507_745566_+\|sel1-repeat-family-protein	gnl\|CDD\|223861	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].	2.12452e-46
NZ_CP032473.1\|WP_139541947.1\|743290_744496_+\|2,3,4,5-tetrahydropyridine-2,6-carboxylate-N-succinyltransferase	gnl\|CDD\|225082	COG2171, DapD, Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism].	6.95369e-90

>NZ_CP032473.1|WP_139541953.1|752757_754296_+|protein-hydE
MAFVFLFKCVNEKTSLNFTPLLEQIAFHLQARFYSVYKDNTTSFYLQASAEITLEFAQKLSEILPFSLDFSFLSLKEITEPLDENLFQTTSLSKPLFMNAKEHQDFLDKNASLYANALGFVKNAAFKGAIIHSPKELIDCLTQLKEALKTQDCIPVHTSRGALSLSLKNPSISVIFSDLSSVLSCTKLPLEDAKYLASLEKPCVKASLKSVFKDTFKNDEIIAQLPFDPILNLLCRILQDEGIEFVFMHANDPQEALLHYEALFKTPKRLITPTKKFVLENNLSAIAFKDELEFLKETPHSIVLYLSFKRPTRLLLHANGSLKTLLSVSFDFNKMFNALKQDEKASRMLQNYATKFPNFYARLLELSKYQLGGANLLDFFQILGFVLGYSEDFCAQSVIPLAKECLRPKGPRIDYKILKDDSFKMALNFSKIMHSAMSFRLAGVENEILSLGVLDSLAEFLGNFIWDNAQNFSVQEVTIAGDFFGEKVFLDLFVRYFPKTLALKVHEFLDYE
>NZ_CP032473.1|WP_078267308.1|752219_752756_+|hydrogenase-biosynthesis-protein-HydD
MSQKILILGIGNILFGDEGIGVHLAHYLKKNFSFFPSVDIVDGGTMAQQLIPLITSYEKVLILDCVSAKGVEIGSVYAFDFKDAPKEITWAGSAHEVEMLHTLRLTEFLGDLPKTFIVGLVPFVIGSETTFKLSSGMLNALETALKAIETRLNAWGVKMQRTDHIALDCIAELSYKGF
>NZ_CP032473.1|WP_139541952.1|751548_752223_+|Ni/Fe-hydrogenase,-b-type-cytochrome-subunit
MDKMNKVVLHKEYSGFVRFFHWVRALSIFALIATGFYIAYPFLQPNSSFYKGVYLLQAYVRSFHVMFGFLLISALIFRTYLFFTKESLMERRSFSQLLSPKAWIDQMKAYFLISGKPHTKGAYNPIQLVAYSTLVVLIVLMSLSGVVLYYNVYHAGLGAFLASAFKWFEALCGGLANVRFIHHLATWGFILFVPVHVYMVFFHSIRYDSSGADSMINGYGYTKE
>NZ_CP032473.1|WP_139541951.1|749799_751536_+|nickel-dependent-hydrogenase-large-subunit
MSKKIVVDPITRIEGHLRIEVIVDDDNVITDAFSSSTLFRGLETIIKGRDPRDAGFIAQRICGVCTYSHYKAGITAVENALGITPPLNAQLVRSLMNMALLFHDHVVHFYTLHGLDWCDIMSALKADPIQAAKLSFKYSPYPINTGAGELKAVQKRLSDFAKSGSLGPFNNGYYGHKTYRLSPEQNLIVLSHYLKLLEIQREAAKMTAIFGAKQPHPQSLTVGGVTSVMDILDPTRLAEWKSKFEVVANFINHAYYPDLVMAGEMFANEPSVIKGCGLRNFIAYEEVLLGRDKYLLSSGVVLDGDISKLHPIDESLIKEEVTHSWYQYEDTKEVQLHPYDGQTNPHYTGLKDGESVGIENKIIPAKVLDTKNKYSWIKSPRYDSKPMEVGPLSSVVVGLAAKNPYVTEVATKFLKDTKLPLEALFSTLGRTAARCIEAKTIADNGLLAFDALVENLKSDQSTCAPYHIDKNQEYKGRYIGQVPRGMLSHWVRIKNGVVENYQAVVPSTWNAGPRDSQNQRGAYEMSLIGTKIADLTQPLEIIRTIHSFDPCIACSVHVMDFKGQSLNEFKVEPNFAKF
>NZ_CP032473.1|WP_108388677.1|748635_749790_+|hydrogenase-1-small-subunit
MFYDEKKTYQKIEERLDIVSSFNAHNEHKNLQDEFKGAGISRRDLLKWAGMMSTALALPASFAPLTLKAVEVANRLPVIWLHMAECTGCSESLLRSADPTIDSIIFDYINLEYHETIMVASGFQAEKSLHDAIEKHKNNYILMVEGGIPQGTEYFLTQGPNAETGAEECRKAAQYAAAIFAIGTCSSFGGVQAAYPNPSNAQPLHKIIDKPVINVPGCPPSEKNIVGNVLYYLMFGALPKLDAYNRPSWAYGNRIHDLCERRGHFDAGEFVEHFGDENAKRGFCLYKMGCKGPYTFNNCSKLRFNSHTSWPIGAGHGCIGCSEPNFWDTMSPFEEPLANRSIKTAFDGLGADKVADKVGTTLLSATAIGIVAHALLSKAIKNKE
>NZ_CP032473.1|WP_139541950.1|747890_748475_-|NAD(P)H-dependent-oxidoreductase
MKKVLIINGAKAFGSSGGKLNETLTDHAKKTLKSLGLEVDTTIVDKGYEHAQEVEKFFSADATIWQMPGWWMGEPWIVKKYIDEVFSAGHGKLYASDGRSSQNPTKNYGKGGLMQGKKYMLSLTWNAPIEAFNDPSEFFEGVGVDVVYLHLHKAFQFLGLSALPTFICNDVVKNPQVEQYLNSLTTHLRQAFGK
>NZ_CP032473.1|WP_139541949.1|745798_747844_+|DUF262-domain-containing-protein
MKVTQSTVDEFFALPGTIFSIPVYQRNYTWEEENCEKLLQDIVSISQNKKTHFMGSITYILHHIDDEKSLRQLQEFVIIDGQQRVTTIMLLLKAIEAKIPNEEIKKEIDGLLNLSGQKLRLKPIKSDKEAFDLVMQNRSHEIQGVSHIRNNYKFFTKELDNYISKGYRIEEIYGAFLRLKIVAIGLELGEDDPQVVFESINATGVQLKGLDLIRNYLMMGENSDNQNRLYETYWVPLEDWLGEKDLNDFILTYLRIYFEDKLKKEEREVYYALKDHHRDNFSDNIQGLMSDMREYGRIYQIFLDRDHYFLHRGDPQQLANLRLRIKDLVKIKFGVAKPFILRCARDFEEGKLDYENFYEILQILISYFVRRSVCGDPAPALAELLYSLYRQLGEDVSADALKRYLGKSVGRTAFPNDDKIKVAFLVRNAYAANQVCKFILLEIEKLSNAEPPKEENLEVEHFYPKTPTQEWRDMVGDYFTFEQDYLNNFGNLTLSGQNQRLGSKPYEAKIELMEEYSSLHLNDYFINNTHSWGIEEVKARSKYLADRFCQVGLFKDLPKEYRAREISKTLDDDLTSHNLQSVKLPNGQRKPVRNAKELASAVIDYLLENAREAFESYTDEEPRYICWDKAKAQLRDRDGTLVVPFEKYGFYFVSNASYQTVGSNLKDLILGCDLNPKDFIV
>NZ_CP032473.1|WP_139541948.1|744507_745566_+|sel1-repeat-family-protein
MLKKSLLLLVFLILQLSGAEENNQAPKNTPPELNPANAKGVPNPNTQITPKNDNSNLLDKLGSPENAQTELSAGIDLAKKGDYQGAFKLFSQSCDNGNAAGCFAVGAMYANGVGIQTNRLKAARYYEMGCSGGDATACANLAQMYENKKNADSNDKENALQLYAVACQGGDMLACNNLGWMFANGSGVPKDYYKAISYYKFSCENGNDMGCYNLGLMSNVNNIYGIDKAKLSQVDLNYLACNAGDMMGCANLGWIYANGDLGAPLNNHYAAKYFQMACDGGILGSCNNLGVLYQKGLGVPQDDQRALDLFSYACDNGFESSCRNYGNFKEHLLRVNPNYGRLFMPYHSYEIP
>NZ_CP032473.1|WP_139541947.1|743290_744496_+|2,3,4,5-tetrahydropyridine-2,6-carboxylate-N-succinyltransferase
MINKFKNFVSNYQQSNHYKEPLGFGIARVDIAPISKKILCATYPVLNWKDENLGSYAVFCNALSKEKILKESASERVIEIDESFVLKALDFYTPFLNEAYSNKMAHKNIQVVLELLKALEENRLKNSDGESLYRLVILYEDKPCESVESAYMKLLALSLGKAPLRSLNLEGIFNQLSNAAWSGNKPYELEWLRTNEVALKMRGHFPSIDFIDKFPRYLMQLIPEFDNIRLLDSSKTRFGAYLGTGGYTQMPGASYVNFNAGAMGVCMNEGRISSSVMVGAGTDIGGGASVLGVLSGGNNNPISIGKNCLLGANSVTGISLGDGCIVDAGVAILAGSVIEIEENEFKKLLEVNSALEKHANNLYKGKELSGKNGVHFRSNSQNGKLIAFRSVKKIELNQNLH
>NZ_CP032473.1|WP_003015914.1|742208_743288_+|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase
MLENRVKTKQIFIGGVAIGGDAPISTQSMTFSKTADIESTKNQIDRLKLAGADLVRVAVSNEKDALALKELKKVSPLPLIADIHFHYKFALIAAQSVDAIRINPGNIGSKDKIKAVVDACKEKNIPIRIGVNAGSLEKQFDQKYGPTPKGMVESALYNAKLLEDLDFTNFKISLKASDVMRTIEAYRMLRPLVIYPFHLGVTEAGNLFSSSIKSAMALGGLLMEGIGDTMRVSITGELENEIKVARAILRHSGRLKEGINWISCPTCGRIEANLVDMASRVEKRLSHIKTPLDISVMGCVVNALGEAKHADMAIAFGNRSGLIIKEGKVIHKLAEKDLFETFVIEVENLAKEREKSLKD
>NZ_CP032473.1|WP_120872121.1|754850_755303_-|hypothetical-protein
MHQNNKTFLPNQSAHLSKIILFLNTGFLAYLLSACGANVPIEEVIVKDPKETKAQEVAREEKAIQQENAIIDARTTPLINRFTNYNAYGSLNGFYNSVDNLNSPMQNGMYGGYYMPYYYMPYGFMPYGSGLMPYGPYGYGAPGYFPYAFY
>NZ_CP032473.1|WP_139541955.1|755479_756403_+|outer-inflammatory-protein-OipA
MKKALLLTLSLSFWLHAERNGFYLGLNFLEGSYIKGQGSIGEKASAENALNEAINNAKNSLFPTQNTKAIRDAQSALNAVKDSTKIANRFAGNGGSGGLFNELSFGYKYFLGKKRIIGFRHSLFFGYQLGGVGSVPGSGLIVFLPYGFNTDLLINWTNDKRASQKYVERRVKGLSIFYKDMTGRTLDANTLKKASRHVFRKSSGLVIGMELGASTWFASNNLTPFNQVKSRTIFQLQGKFGIRWNNDEYDIDRYGDEIYLGGSSVELGVKVPAFKVNYYSDNYGDKLDYKRVVSVYLNYTYNFKNKH
>NZ_CP032473.1|WP_139541956.1|756469_757156_-|7-cyano-7-deazaguanine-synthase-QueC
MEQEICVIGFSGGQDSTTLAVWAKKRFKKVCLVGFDYAQKHSVELECAQKIASLLQLPYEIISLDFLENITRSALFKNSNDLIGHSHAQNKDLPNSFVPNRNAIFITLLHSYAQKIGASNIALGVSQADFSGYPDCKEDFIKSIEHALNLGSNTAIKILTPLMFLNKAQEFQMAKDLGVLDLVIKETHTCYQGERKILHAYGYGCDKCPACQLRKKGYEEFQTKALFQ
>NZ_CP032473.1|WP_139541957.1|757218_758427_+|CCA-tRNA-nucleotidyltransferase
MFELEKELKELFDIYEKSPYELYLVGGCVRDCLMGITPKDYDLTSNALVNESKELLLKRHFRVLETGIKHGTITALKNHQSYEITTFRIEKGHIKHRKPKELVFSAHLTDDLKRRDFSMNAIAYSPTKGIIDPFKGQNAIENQTIECVGGARLRFFEDALRILRALRFSATLGFKIAPSTKEAVFACKDLLKHLSKERLQSELNKLLMGKNAYEVAKEYQEILELVIQEKIENLGFLKTAPLNLELRLLGFFKHQKSLENLRYPKKTYVLFAQAKECHKAFLNIHNKTELKFLLKNYDLEPFNLALDFYALKNPKHALKIKSLLKEIFNANEPFKKEHLALKGGTLQSLGYQHQKIGKILNACLNLVIAHPKNNALEWLIKWVKDHYLPNDAINHSPIGRKN
>NZ_CP032473.1|WP_139541958.1|758592_759105_+|NAD(P)-binding-domain-containing-protein
MKIGWIGLGAMGTPMATRLCDAGLKVSVYNRTESKAASLKEKGVAVYTNPIDLATKVDLIFTMLSDKTAIDAVLVPKFWEQMSEKIVVNMSTIAPLESLSLEKIAQKHQVTYLEAPVSGSLGAAKAGALLILAAGEKEVITQLKPVLAHLGSQTFYLGKVGQGMESQIIH
>NZ_CP032473.1|WP_139542561.1|759121_759451_+|NAD-binding-protein
MGVAYSEALLLAKHLGVDAESFLQIIGQSGMNSPLFQAKKGMWLQDSYPAAFSLKLMLKDIRLAKNEAGEAMKLPFLFQAEELYSQAEKSGLGTLDMAAVYHYLEKGEH
>NZ_CP032473.1|WP_000373527.1|759452_760106_+|NAD(P)H-dependent-oxidoreductase
MDREQVVALQHQRFAAKKYDPNRRISQKDWEALVEVGRLAPSSIGLEPWKMLLLKNERMKEDLKPMAWGALFGLEGASHFVIYLARKGVTYDSDYVKKVMHEVKKRDYDTNSRFAQIIKNFQENDMKLNSERSLFDWASKQTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAYLEEKGYLNTAEFGVSVMACFGYRNQEITPKTRWKTEVIYEVIE
>NZ_CP032473.1|WP_139541959.1|760270_761590_+|glutamate--tRNA-ligase
MLRFAPSPTGDMHIGNLRAAIFNYIVAKQQHKPFLIRIEDTDKERNIEGKDQEILEILKLMGISWDKLVYQSHNIDYHRGMAEKLLKEHKAFYCYASAEFLEKEKEKAKNEKRPFRYLDEWATLEKDKNHAPVVRLKAPNHAVSFNDTIKKEVEFEPDELDSFVLLRQDKSPTYNFACACDDLLYEISLIIRGEDHVSNTPKQILIQQALGSNDPIVYAHLPIILDETSGKKMSKRDEASSVKWLLNQGFLPVAIANYLITIGNKVPKEVFSLDEAIEWFSLENLSSSPAHFNLKYLKHLNHEHLKLLDDEKLLELTSIKDKNLLGLLRLFIEECGTLLELKEKISLFLEPKDIVKTYENEDFKERCLALFNALKSMDFQAYKDFESFKKEAMRLSQLKGKDFFKPLRILLTGNSHGVELPLIFPYIQSHHQEVLRLKA
>NZ_CP032473.1|WP_139541960.1|761586_761880_+|YggT-family-protein
MIFSTLINAIAVILSALLTIYMWIVIIYSLISFVQPNPNNPIMQILARLCEPVFYFLRSRFKLVFNGLDFAPLVVVVVLKFLDLTLIQWLFMLAKNL
>NZ_CP032473.1|WP_139541961.1|761893_763576_+|transglycosylase-SLT-domain-containing-protein
MRFFTLFFIGMLGVGFSQTEFNLKDLEKKPAGIVRDYYLWRYISDKKTSLENAKKAYELTQNKNSALQKAMQEKGSDNAEKSPDVKLPEDIYCKQITLESMLETTDTFQASCIAIALKSKIRDFDKIPLQTLKPLQEKIKEAYPVLYEELEILQSKHVSASLFKANAQVFSALFNHLSYEKKLQIFEKHIPIKELNRLLDEDYPAFNRLIYQVILDPKLDHFKDALTKSNATHSNAQTFFILGINEILRKKPSKALKYFERSEAVVKDDDFSKDRAIFWQYLVSKKKKTLERLSQSPALNLYSLYASRKLQTTPSYRIISHIQNLSQEDPPFNTYDPFSWQIFKEKTLSLKGEDAFNAMLKSLYYEKSAPELTYLLSQRNKDKIYYYLSPYEGIIEWQNTDEKAMAYAIARQESFLLPAVISRSFALGLMQIMPFNVGSFAKRLGMDNIDLNDMFNPNIALKFGNYYLNHLKKEFNHPLFVAYAYNAGPGFLRRWLESSKRFKEKNHFEPWLSMELMPYSETRLYGFRVMLNYLIYQEIFGNFIPIDGFLEQTLNSKDKP

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Crispr_ID: NZ_CP032473_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP032473_3

1020198-1020294

Orphan

Consensus_repeat	Method
AAAAAGAAAAAGATCAAACCCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP032473_3

>merge|NZ_CP032473|3|1020198-1020294|CRISPRCasFinder
AAAAAGAAAAAGATCAAACCCCCCCAAAAAATAAAAACTTAAAAAGCGGGTTGAAAAATCAGTGAAAAATCAGAAAAAAGAAAAAGATCAAACCCCC

>NZ_CP032473|3|3|1020198-1020294|CRISPRCasFinder
AAAAAGAAAAAGATCAAACCCCC	CCAAAAAATAAAAACTTAAAAAGCGGGTTGAAAAATCAGTGAAAAATCAGA
AAAAAGAAAAAGATCAAACCCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP032473.1\|WP_139542130.1\|1019474_1019735_-\|YafQ-family-addiction-module-toxin	unknown	unknown	gnl\|CDD\|379750
NZ_CP032473.1\|WP_139542136.1\|1027984_1028989_-\|phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|223926
NZ_CP032473.1\|WP_139542129.1\|1019082_1019394_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032473.1\|WP_139542135.1\|1027362_1027995_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235537
NZ_CP032473.1\|WP_139542138.1\|1030722_1031628_+\|flagellar-hook-assembly-protein-FlgD	unknown	unknown	gnl\|CDD\|235621
NZ_CP032473.1\|WP_000242353.1\|1015453_1016221_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP032473.1\|WP_000921458.1\|1016220_1017201_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP032473.1\|WP_120929831.1\|1018187_1018712_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|224523
NZ_CP032473.1\|WP_139542134.1\|1025243_1025480_-\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	unknown	unknown	gnl\|CDD\|223375
NZ_CP032473.1\|WP_128032099.1\|1026458_1026758_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380358
NZ_CP032473.1\|WP_139542131.1\|1019715_1020090_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032473.1\|WP_139542128.1\|1018757_1019096_-\|YafQ-family-addiction-module-toxin	unknown	unknown	gnl\|CDD\|225583
NZ_CP032473.1\|WP_139542126.1\|1011509_1015400_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|111576
NZ_CP032473.1\|WP_000003589.1\|1025479_1026208_-\|hydrogenase-nickel-incorporation-protein-HypB	unknown	unknown	gnl\|CDD\|272891
NZ_CP032473.1\|WP_139542127.1\|1017193_1018048_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187632
NZ_CP032473.1\|WP_139542133.1\|1024116_1025229_-\|hydrogenase-formation-protein-HypD	unknown	unknown	gnl\|CDD\|237892
NZ_CP032473.1\|WP_139542132.1\|1020573_1022808_-\|Hop-family-adhesin-BabA	unknown	unknown	gnl\|CDD\|375731
NZ_CP032473.1\|WP_139542137.1\|1029127_1030672_+\|flagellar-hook-length-control-protein-FliK	unknown	unknown	gnl\|CDD\|376734
NZ_CP032473.1\|WP_000973846.1\|1026319_1026448_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032473.1\|WP_139542125.1\|1009887_1011285_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705

Protein	Function_ID	Function_description	E-value
NZ_CP032473.1\|WP_139542130.1\|1019474_1019735_-\|YafQ-family-addiction-module-toxin	gnl\|CDD\|379750	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ. YafQ is a family of bacterial toxin ribonucleases of type II toxin-antitoxin systems. The E.coli gene is expressed from the dinB operon. The cognate antitoxin for the E. coli protein is DinJ, in family RelB_antitoxin, pfam02604.	1.81111e-30
NZ_CP032473.1\|WP_139542136.1\|1027984_1028989_-\|phosphate-acetyltransferase	gnl\|CDD\|223926	COG0857, Pta, BioD-like N-terminal domain of phosphotransacetylase [General function prediction only].	3.66226e-51
NZ_CP032473.1\|WP_139542135.1\|1027362_1027995_-\|hypothetical-protein	gnl\|CDD\|235537	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed.	1.35467e-128
NZ_CP032473.1\|WP_139542138.1\|1030722_1031628_+\|flagellar-hook-assembly-protein-FlgD	gnl\|CDD\|235621	PRK05842, flgD, flagellar hook assembly protein FlgD.	3.11471e-178
NZ_CP032473.1\|WP_000242353.1\|1015453_1016221_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.48329e-99
NZ_CP032473.1\|WP_139542127.1\|1017193_1018048_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187632	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs. 17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.55365e-89
NZ_CP032473.1\|WP_120929831.1\|1018187_1018712_+\|acyl-CoA-thioesterase	gnl\|CDD\|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	7.84824e-63
NZ_CP032473.1\|WP_139542134.1\|1025243_1025480_-\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	gnl\|CDD\|223375	COG0298, HypC, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones].	6.91426e-30
NZ_CP032473.1\|WP_128032099.1\|1026458_1026758_-\|cupin-domain-containing-protein	gnl\|CDD\|380358	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain. This family includes prokaryotic and archaeal proteins homologous to HP0902, a functionally uncharacterized protein from Helicobacter pylori and Spy1581, a protein of unknown function from Streptococcus pyogenes. These proteins demonstrate all-beta cupin folds that cannot bind metal ions due to the absence of a metal-binding histidine that is conserved in many metallo-cupins. HP0902 is able to bind bacterial endotoxin lipopolysaccharides (LPS) through its surface-exposed loops, where metal-binding sites are usually found in other metallo-cupins, and thus may have a putative role in H. pylori pathogenicity.	3.68528e-20
NZ_CP032473.1\|WP_139542128.1\|1018757_1019096_-\|YafQ-family-addiction-module-toxin	gnl\|CDD\|225583	COG3041, COG3041, Uncharacterized protein conserved in bacteria [Function unknown].	3.32936e-37
NZ_CP032473.1\|WP_139542126.1\|1011509_1015400_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|111576	pfam02691, VacA, Vacuolating cyotoxin. This family consists of Vacuolating cyotoxin proteins form Proteobacteria. These proteins are an important virulence determinate in H. pylori and induce cytoplasmic vacuolation in a variety of mammalian cell lines.	0
NZ_CP032473.1\|WP_000003589.1\|1025479_1026208_-\|hydrogenase-nickel-incorporation-protein-HypB	gnl\|CDD\|272891	TIGR00073, nickel_incorporation_protein_HypB, hydrogenase accessory protein HypB. A GTP hydrolase for assembly of nickel metallocenter of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel. hits scoring 75 and above are safe as orthologs. [SS 1/05/04 I changed the role_ID and process GO from protein folding to to protein modification, since a protein folding role has not been established, but HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.] [Protein fate, Protein modification and repair].	1.32809e-108
NZ_CP032473.1\|WP_000921458.1\|1016220_1017201_-\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	2.2564e-66
NZ_CP032473.1\|WP_139542133.1\|1024116_1025229_-\|hydrogenase-formation-protein-HypD	gnl\|CDD\|237892	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional.	0
NZ_CP032473.1\|WP_139542132.1\|1020573_1022808_-\|Hop-family-adhesin-BabA	gnl\|CDD\|375731	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain. This is the N-terminal extracellular adhesion domain of Sialic acid binding adhesin (SabA) present in Helicobacter pylori. The N-terminal domain of SabA functions as a sugar-binding adhesion domain with conserved disulfide bonds. Notably, these amino acid residues are not only conserved among SabA orthologs but also between SabA and BabA.	2.27221e-72
NZ_CP032473.1\|WP_139542137.1\|1029127_1030672_+\|flagellar-hook-length-control-protein-FliK	gnl\|CDD\|376734	pfam02120, Flg_hook, Flagellar hook-length control protein FliK. This is the C terminal domain of FliK. FliK controls the length of the flagellar hook by directly measuring the hook length as a molecular ruler. This family also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems.	5.4935e-12
NZ_CP032473.1\|WP_139542125.1\|1009887_1011285_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0

>NZ_CP032473.1|WP_139542131.1|1019715_1020090_-|hypothetical-protein
MPNTTNKDYTQYSQRQLFNLIHQLEQKIKKMQNDRVSFKEKMAKELEKRDQNFKDKIDALNELLQKISQAFDDKRDCCLGRKIPNIQTQQAMRDVGNKETDLIVEDFSSYSDERKRALSVETQP
>NZ_CP032473.1|WP_139542130.1|1019474_1019735_-|YafQ-family-addiction-module-toxin
MLKLNLKKSFQKDFDKLLLNGFDDSVLNEVILRKKEPLDPRFQDHALKGKWKPFRECHIKADILLVYLVKDDELVLLRLGSHSELF
>NZ_CP032473.1|WP_139542129.1|1019082_1019394_-|hypothetical-protein
MPNTTAKKDYTQYSEKQLFNFLNSIKTKQKRALEKLKEIQAQKQRIKKALQFKALHLTENGYTIEEEREILSRAEDTKNHLCFKSIEDFKKHCENLRFKNADN
>NZ_CP032473.1|WP_139542128.1|1018757_1019096_-|YafQ-family-addiction-module-toxin
MLIIETSKKFDKDLKILVKNGFDLKLLYKVVENLAKEQPLAPKYKDHPLKGGLKDFRECHLKPDLLLVYQIKKQENTLFLVRLGSHSRLFCKSPTPLITLKSTAQPTTPPLF
>NZ_CP032473.1|WP_120929831.1|1018187_1018712_+|acyl-CoA-thioesterase
MPQIQSSHSSHFDFTIDTADRTKLLMSYLVVPTTANFNNVMHGGELLNLLDKVAYVCSTRYCAKGTVTLSVDGVTFKYPIPVGNLLTFLASINYVGNTSCEVGIKVLSEDIKTREITHTNSCYFTMVAVENSKPTPMPKYEPKTEVEIRRYEGALKRKEMRTRGYLKSGKHEGV
>NZ_CP032473.1|WP_139542127.1|1017193_1018048_-|SDR-family-NAD(P)-dependent-oxidoreductase
MGVGEKKESQKVAIITGASSGIGLECALMLLDQGYKVYALSRHATLCIALNHALCESVDIDVNDSNALKEAFSNISTKEDHCDVLINSAGYGVFGSVEDTPIEEVKKQFGVNFFALCEVVQLCLPLLKNKPYSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNVQVCLIEPGPVKSNWEKTAFSVENFESENGLYALEVNAAKTFYASVYQKALSAKAVAQKIVFLSMSQKIKARYLIGLKTQLLLALYRILPSSWYDSLFRLIVLKRKRDA
>NZ_CP032473.1|WP_000921458.1|1016220_1017201_-|iron-ABC-transporter-permease
MLKTYHIALACVILAVVVLLFGGESLSLEEWQEVCLNVKNHFLHNEELSSLSIIILEIRLPRVILALLVGASLSGSGVVMQTIFRNPLVDPFLLGISSGAMLGVAMAIAVVESNIAILAFFGAILASLAVLAMNRVLGNSVLSLVLSGVVLSAFLSALAGAIKFFVIPQKAQAIVVWLLGSLSLSSYKDCLIAFIGLSLGFIPLFLLRWRINLLSLSDAQSLSLGINPVLLRSLCLVCVSVASALAVSVSGTIGWIGLVIPHVARLFFGANLQKLLLSSLLMGAFFLLLADVVAKTITPYDLPVGIATSVLGAPFFLWLLFRTRGV
>NZ_CP032473.1|WP_000242353.1|1015453_1016221_-|ABC-transporter-ATP-binding-protein
MVLEVKNLSFKYSQKLILDKLSFSVPKNSITSILAPNGSGKTTLLKCLLGLLKPLEETEIKACNKDILPLKPYEKAKLIAYIPQVEYYAFNFSVLDFVLMGKATHLNLFAMPKAKHIKEATSVLERLDLESLKDQGINDLSGGQRQMVLLARSLLQRTPLLLLDEPTSALDLKNQALFFDAIKDEMKKRELSVLVNIHDPNLVARHSTHVVMLKDKKLFLQASTPIAMTSHNLSTLYDTPLEAIWHDNKLVVYAL
>NZ_CP032473.1|WP_139542126.1|1011509_1015400_+|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MEIQQTHRKINRPLVSLALVGALVSITPQQSHAAFFTTVIIPAIVGGIATGAAVGTVSGLLSWGLKQAEEANKAPDKPDKVWRIQAGRGFDNFPHKQYDLYRSLLSSKIDGGWDWGNAATHYWVKGGQQNKLEVDMKDAVGTYNLSGLRNFTGGDLDVNMQKATLRLGQFNGNSFTSYKDSANRTTRVDFNAKNILIDNFLEINNRVGSGAGRKASSTVLTLQASEGITSDKNAEISLYDGATLNLASSSVKLMGNVWMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGDKNAAQAGIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKNQTNNTPSQSGAKNDKNESAKNDKQESSQNNSNTQVINPPNSTQKTEIQPTHVIDGPFAGGKNTVVNINRINTNADGTIRVGGYKASLTTNAAHLHIGKGGINLSNQASGRSLLVENLTGNITVDGPLRVNNQVGGYALAGSSANFEFKAGTDTKNGTATFNNDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDFSGVTDKVNINKLITASTNVAIKNFNINELLVKTNGVSVGEYTHFSEDIGSQSRINTVRLETGTRSIYSGGVKFKGGEKLVINDFYYAPWNYFDARNIKNVEITNKLAFGPQGSPWGTSKLMFNNLTLGQNAVMDHSQFSNLTIQGDFINNQGTINYLVRDGQVATLNVGNAAAMFFNNNVDSATGFYQPLMKINSAQDLIKNKEHVLLKAKIIGYGNVSAGTNSISNVNLIEQFKERLALYNNNNRMDICVVRNTDDIKACGTAIGNQSMVNNPDNYKYLIGKAWKNIGISKTANGSKISVHYLGNSTPTENGGNTTNLPTNTTSNARSANNALAQNAPFAQPSAISNLVAINKHDFGTIESVFELANRSKDIDTLYANSGAQGRDLLQTLLIDSHDAGYARKMIDATSANEITKQLNTATTTLNNIASLEHKTSGLQTLSLSNAMILNSRLVNLSRRHTNNIDSFAQRLQALKDQRFASLESAAEVLYQFAPKYEKPTNVWANAIGGTSLNNGSNASLYGTSAGVDAYLNGEVEAIVGGFGSYGYSSFSNRANSLNSGANNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLQDLNQSYNYLAYSAATRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKSNSANKVALSNGSSSQHLFNASANVEARYYYGDTSYFYMNAGVLQEFANFGSSNAVSLNTFKVNAAHNPLNTHARVMMGGELKLAKEVFLNLGFVYLHNLISNASHFASNLGMRYSF
>NZ_CP032473.1|WP_139542125.1|1009887_1011285_+|cysteine--tRNA-ligase
MFIYDTKLKQKVPFEPLVEKKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYEVMLVRNFTDIDDKIINKALKENKSIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVHMIETLLEKNFAYQISNGDIYLDTSKDKDYGSLSVHNSSVEFGRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMVFETLALANTPYQIDIHAGGADLLFPHHENEACQTRCAFGVELAKYWMHNGFVNINNEKMSKSLGNSFFVKDALKNYDGEILRNYLLGVHYRSVLNFNEEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKKEILECMQDDLNVSKALSVLESMLSSTNEKLDQNPKNKALKGEILANLKFVEELLGIGFKDPSAYFQLGVSESEKQEIENKIEERKRAKERKDFLKADSIREELLKQKIALMDTPQGTIWEKFF
>NZ_CP032473.1|WP_139542132.1|1020573_1022808_-|Hop-family-adhesin-BabA
MKKHILSLALGSLLVSALSAEDDGFYTSVGYQIGEAAQMVTNTKGIQQLSDNYENLSKLLTRYSTLNTLIKLSADPSAVNAARENLGASAKNLIGDTKTSPAYQAVLLAINAAVGFWNVLGYVTQCGGNANGQRSTSSTTIFNNEPGYRFTSITCSLNRYAPGYYGPMSIENFKKLNEAYQILQTALKKGLPALKENNGTVSVTYTYTCSGEGNNNCLKGATGVNEQNGVTKTETQTIDGKSVTTTISSKVVDSNANGNTSRVSYTEITNKLDGVPDSAQFLLAQASTLINTINTACPYFHATNSSEANAPKFSTTTGKICGAFSEEISAIQKMITDAQELVNQTSVINEHEQSTPVGNNNGKSFNPFTDASFAQGMLANASAQAKMLNLAHQVGQTLNPDNLTGNFKNFVTGFLATCNNPSTAGTSGTQGSAPGTVTTQTFASGCAYVGQTITNLENSIAHFGTQEHQIQQAENIADTLVNFKSRYSELGNTYNSITTALSKVPNAQSLQNVVSKKNNPYSPQGIETNYYLNQNAYNQIQTINQELGRNPFRKVGIVSSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSVGLFGGIALAGTSWLNSEYVNLATVNNVYNAKMNVANFQFLFNMGVRMNLARPKKKDSDHVAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY
>NZ_CP032473.1|WP_139542133.1|1024116_1025229_-|hydrogenase-formation-protein-HypD
MSVDHLISPFRDKQTLLALSNAIKKLAFKLEKKLVIMEVCGGHTHSIMKYGLLDLMPKNLEFVHGPGCPVCVMPRARLDEAYELAMIKDSIILSLGDMMKVPGSYGSLIQAREKGLDARFLYSPMQALEIAKENPHKKVIYIAIGFETTTPMTASVLNNAKKEKIHNLFFHTNHILVPPSVSAILEDPACQINALLAPSHVSVISGAQIYAPLVDRFKIPIIVSGFEPVDILESVLMLIKQALNKEAKLEIQYKRAVSYEGNVKAQELVNACMEVRENFEWRGLGNIKHSALKLKETFASYDAEKVFKEHLSHKTSKENKACKCGEILKGIAKPLDCSLFAKICTPQNPIGSCMVSSEGACAAYYRYKRV
>NZ_CP032473.1|WP_139542134.1|1025243_1025480_-|HypC/HybG/HupF-family-hydrogenase-formation-chaperone
MCLAIPSKVIAIKDNVALLETLGVQREAILDLMGESVKVGDYVLLHIGYVMSKIDEKEALESIELYQEMIAKMNETHE
>NZ_CP032473.1|WP_000003589.1|1025479_1026208_-|hydrogenase-nickel-incorporation-protein-HypB
MSEQRKESLQNNPNLSKKDVKIVEKILSKNDIKAAEMKERYLKEGLYVLNFMSSPGSGKTTMLENLADFKDFKFCVVEGDLQTNRDADRLRKKGVSAHQITTGEACHLEASMIEGAFDLLKDEGALEKSDFLIIENVGNLVCPSSYNLGAAMNIVLLSVPEGDDKVLKYPTMFMCADAVIISKADMIEVFNFRVSQVKEDMQKLKPEAPIFLMSSKDPKSLEDFKNFLLEKKRENYQSTHSF
>NZ_CP032473.1|WP_000973846.1|1026319_1026448_-|hypothetical-protein
MMKAVFINVWYLLLTIILLIIIWRIIKLVLKDKNDSDDKGLG
>NZ_CP032473.1|WP_128032099.1|1026458_1026758_-|cupin-domain-containing-protein
MEVVHFLEGVCFEKLHIEALNENSLTKEIRICMPKGAVMDKHKAPGAISVQVLEGKIIFEVGDEKIEMPKGALISLEAQVSHRLDALENSVIRLSLSKK
>NZ_CP032473.1|WP_139542135.1|1027362_1027995_-|hypothetical-protein
MTADTIRPALQIIKTKPGVSLVSSVFLMCLDTQVLVFGDCAIIPNPSPKELAEIAITSAQTAKQFNIAPKVALLSYATGNSAQGEMIDKINEALTIAQHLDPQLEIDGPLQFDASIDKGVAKKKMPNSQVAGQASVFIFPDLNAGNIAYKAVQRSAKAVAIGPILQGLNKPINDLSRGALVEDIINTVLISALQAQQPFKRVKAWTLLWG
>NZ_CP032473.1|WP_139542136.1|1027984_1028989_-|phosphate-acetyltransferase
MLQLNKNDDFREIGMQSLWIYPEDTEVLGVACKSLLKALKPHYQKIALFSPISGGCEGFGECEGLNPLEFHNAIDKQKALELVSTAQEELLFETILKRYDELQTTHDFVVCLGYTPKFFLNALLDLNTILAKHLNAPMVAVAQTSLEYLKAMHSHILKKEAPFAVGLFAGEMLEKPHFLSASLCKQQCELEASVIENLLQTKSEIITPLAFQRSLEKKAKKQIKKVVLPESEDERILKAAHRLNAMGAVGLILLGDKGAINSKNLNLNLENAEIIDPNTSHYREEFAKSLYELRKSKGLSEQEAEQLVLDKTYFATMLVHSGYVHAMVSGVNHS
>NZ_CP032473.1|WP_139542137.1|1029127_1030672_+|flagellar-hook-length-control-protein-FliK
MPSPINPIHTNANALNSGAKNEDTKNAPKSASKDFSKILNQKISKDKTAPKENPNALKATPKNSKEGAKALEKTPTPHHQHAQNPAKDQQAPTLKDLLNHKKTTASHEAQHETHEHETNPKTPNETLNKNEKKPNEALSNAHQTNLASKNPLTPTNHANNAIKNPTAPTDTKKEPKTLKDIQTLSQKHDLNASNIQAATTPENKTPLNASDQLALKTTQTPTNHTLAKNDAKNTANLSSVLQSLEKKDPHNKEHATPPNNEKKTPPLKEALEMNAIKRDKTLSKKKPEKTQTKTQTTAPSATPENALKISLKTPPLMPLIGANPPPNDNIPTPLEKEEKAKEISDNKEKTKETNNSTQSAQNAQASDKTSENKSVTPKETIKHFTQQLKQEIQEYKPPMSRISMDLFPKELGKVEVIIQKVGKNLKVSVISHNNSLQTFLDNQQDLKNSLNALGFEGVDLSFSQDSSKEQPKEQLRELFKEQELTPLKENALKSYQENTDHENQETSMQITLYA
>NZ_CP032473.1|WP_139542138.1|1030722_1031628_+|flagellar-hook-assembly-protein-FlgD
MAIDLAEVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSNKETNESLKDFQGALKDTMENLNKGMDDSLKANNALREVSALNSVSMIGKIAETDVSGANFDGNNKLSFSLFFDEKIDASKGVPAIQILNENNELVKTIPLKDYNGQKGYINFEWDGTNEKGEKVPKGNYKIKAEYNLDSHSKQYLQTRIGRGEVESVVFDKGKPMLRMGEMILPIDSAIEFYQPEQKPIEQKPIEQKLSDQKPLEQKPQTPPKETA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

16288 : 71166

Helicobacter_phage(30.77%)

transposase,tRNA,protease,integrase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_139541551.1\|16288_16972_-\|protease	CAAX protease	NA	NA	NA	NA
WP_139541552.1\|17028_18216_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_139541553.1\|18311_19472_-\|tRNA	L-seryl-tRNA(Sec) selenium transferase	NA	NA	NA	NA
WP_139541554.1\|21338_22667_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1S5RHD5	Helicobacter_phage	1.3e-191	93.5
WP_000717709.1\|22703_23120_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	1.9e-75	97.8
WP_139541555.1\|24477_24804_-	Plug domain-containing protein	NA	NA	NA	NA
WP_139541556.1\|24787_25141_-	FolB domain-containing protein	NA	NA	NA	NA
WP_000113863.1\|25137_25926_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_139541557.1\|25905_27282_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA
WP_079300546.1\|27291_28491_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA
WP_139541558.1\|28576_29803_+	sodium/glutamate symporter	NA	NA	NA	NA
WP_139541559.1\|29799_30834_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase	A0A1V0SE20	Indivirus	2.2e-16	27.9
WP_139541560.1\|30815_31532_+	methyltransferase	NA	NA	NA	NA
WP_139541561.1\|31556_33908_+	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	1.9e-44	27.6
WP_000338876.1\|33904_34342_-	CopD family copper resistance protein	NA	NA	NA	NA
WP_139541562.1\|37040_38108_-	LptF/LptG family permease	NA	NA	NA	NA
WP_139541563.1\|38162_38723_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_000889343.1\|38732_39269_-	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA
WP_139541564.1\|39323_40274_-	transaldolase	NA	NA	NA	NA
WP_139541565.1\|40277_41621_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA
WP_001168590.1\|41624_42236_-	hypothetical protein	NA	NA	NA	NA
WP_000569296.1\|42247_42517_-	NifU family protein	NA	NA	NA	NA
WP_139541566.1\|42657_44259_+	inorganic phosphate transporter	M4QMY4	Ostreococcus_lucimarinus_virus	4.9e-39	31.9
WP_139541567.1\|44361_45699_+	DUF21 domain-containing protein	NA	NA	NA	NA
WP_139541568.1\|45714_47247_+	TolC family protein	NA	NA	NA	NA
WP_000071820.1\|47258_48248_+	biotin/lipoyl-binding protein	NA	NA	NA	NA
WP_139541569.1\|48259_49357_+	ABC transporter permease	NA	NA	NA	NA
WP_139541570.1\|49353_50484_+	ABC transporter permease	NA	NA	NA	NA
WP_139541571.1\|50470_51043_+	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	7.1e-17	35.3
WP_000395050.1\|51053_51500_+	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA
WP_139541572.1\|51509_52250_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA
WP_139541573.1\|52259_52529_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_139541574.1\|52532_53330_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_139541575.1\|53330_54578_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.7e-77	48.0
WP_139541576.1\|54587_57125_+	anaphase-promoting protein	NA	NA	NA	NA
WP_139541577.1\|57121_59170_+	DNA helicase UvrD	A7KV33	Bacillus_phage	2.9e-89	34.6
WP_139541578.1\|59166_59823_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA
WP_040163668.1\|59832_60396_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_024111991.1\|60395_60869_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	4.8e-27	44.9
WP_139541579.1\|60870_61446_+	dTMP kinase	Q2XUX0	environmental_halophage	1.3e-10	33.6
WP_139541580.1\|61433_62009_+	ComF family protein	NA	NA	NA	NA
WP_139542543.1\|63726_65529_+	relaxase	NA	NA	NA	NA
WP_001120380.1\|66682_67750_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	1.3e-08	26.7
WP_139541581.1\|68063_68867_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_127919484.1\|68838_69090_-	hypothetical protein	NA	NA	NA	NA
WP_000717709.1\|69384_69801_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	1.9e-75	97.8
WP_139541582.1\|69837_71166_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1S5RHD5	Helicobacter_phage	1.1e-190	93.3

DBSCAN-SWA_2

453826 : 513645

Helicobacter_phage(35.29%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_139541782.1\|453826_454255_-\|transposase	IS200/IS605 family transposase	A0A1S5REW8	Helicobacter_phage	9.5e-75	97.9
WP_139541783.1\|454324_455608_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1S5REX3	Helicobacter_phage	1.1e-203	93.7
WP_139542553.1\|455564_455885_-	hypothetical protein	NA	NA	NA	NA
WP_033590451.1\|456271_456451_+	hypothetical protein	NA	NA	NA	NA
WP_139541784.1\|456864_457674_-	flagellar hook-basal body complex protein	NA	NA	NA	NA
WP_139541785.1\|457728_459003_-	MFS transporter	Q6JIH2	Burkholderia_virus	3.3e-30	25.5
WP_139541786.1\|459187_461752_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	1.0e-83	46.9
WP_139541787.1\|461739_464076_-	ATP-dependent deoxyribonuclease AddB	NA	NA	NA	NA
WP_139541788.1\|464072_465998_-	transketolase	NA	NA	NA	NA
WP_139541789.1\|466044_466887_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA
WP_139541790.1\|466852_467560_-	TlyA family rRNA (cytidine-2'-O)-methyltransferase	NA	NA	NA	NA
WP_000523550.1\|467559_468075_-	hypothetical protein	NA	NA	NA	NA
WP_139541791.1\|468145_469069_+	aspartate carbamoyltransferase	A7RB08	Paramecium_bursaria_Chlorella_virus	6.7e-25	30.9
WP_139541792.1\|469283_470723_+	outer membrane beta-barrel protein HofB	NA	NA	NA	NA
WP_139541793.1\|470813_472469_+	ATP-binding cassette domain-containing protein	A0A076FI99	Aureococcus_anophage	2.1e-29	24.4
WP_139541794.1\|472462_473086_+	neuraminyllactose-binding hemagglutinin family protein	NA	NA	NA	NA
WP_139541795.1\|473089_473659_+	restriction endonuclease	NA	NA	NA	NA
WP_000717709.1\|475023_475440_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	1.9e-75	97.8
WP_139541582.1\|475476_476805_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1S5RHD5	Helicobacter_phage	1.1e-190	93.3
WP_139520514.1\|476914_477610_+	hypothetical protein	NA	NA	NA	NA
WP_139541796.1\|477667_478663_+	HoxN/HupN/NixA family nickel/cobalt transporter	NA	NA	NA	NA
WP_139541797.1\|478666_479182_-	hypothetical protein	NA	NA	NA	NA
WP_139541798.1\|479317_480634_+	purine-nucleoside phosphorylase	NA	NA	NA	NA
WP_000648263.1\|481281_481482_-	copper-binding metallochaperone CopP	NA	NA	NA	NA
WP_139541799.1\|481482_483720_-	copper-translocating P-type ATPase CopA	A0A218MNH6	uncultured_virus	1.1e-89	32.2
WP_108383275.1\|483716_484430_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_139541800.1\|484419_484674_-	hypothetical protein	NA	NA	NA	NA
WP_000805279.1\|484676_486575_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	A0A0P0CCN8	Ostreococcus_mediterraneus_virus	1.0e-99	44.1
WP_139541801.1\|486583_487585_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_000772151.1\|487585_487960_-	response regulator	Q56AR1	Bacillus_thuringiensis_phage	3.5e-09	33.6
WP_139541802.1\|488206_488851_+	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_139541803.1\|488983_489391_-	hypothetical protein	NA	NA	NA	NA
WP_139541804.1\|489393_489687_-	prokaryotic metallothionein family protein	NA	NA	NA	NA
WP_108363985.1\|489629_490166_-	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA
WP_139541805.1\|490162_491200_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_139541806.1\|491200_491950_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.6e-29	35.8
WP_139521713.1\|491942_492395_-	Sec-independent protein translocase subunit TatB	NA	NA	NA	NA
WP_139541807.1\|492462_493473_-	Holliday junction branch migration DNA helicase RuvB	NA	NA	NA	NA
WP_139541808.1\|493473_494286_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	1.7e-40	34.5
WP_139541809.1\|494434_495157_+	hypothetical protein	NA	NA	NA	NA
WP_139542554.1\|495146_495986_+	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_139541810.1\|495997_496939_+	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_139542556.1\|497002_498271_+	M23 family metallopeptidase	NA	NA	NA	NA
WP_139541811.1\|498207_498861_+	septum site-determining protein MinC	NA	NA	NA	NA
WP_139541812.1\|498857_499745_+	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	NA	NA	NA	NA
WP_139542555.1\|499818_500265_+\|tRNA	tRNA threonylcarbamoyladenosine biosynthesis protein TsaB	NA	NA	NA	NA
WP_000261704.1\|500318_501200_+	homoserine kinase	NA	NA	NA	NA
WP_078249102.1\|501171_501441_+	YlxR family protein	NA	NA	NA	NA
WP_139541813.1\|501437_504272_+	translation initiation factor IF-2	E3T4N3	Cafeteria_roenbergensis_virus	2.5e-30	25.9
WP_127971602.1\|504271_504607_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_139541814.1\|504599_505040_+	ribosome maturation factor RimP	NA	NA	NA	NA
WP_139541815.1\|505148_507137_-	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	1.2e-82	37.4
WP_139541816.1\|507335_508448_+	metallophosphoesterase	NA	NA	NA	NA
WP_139541817.1\|508792_509464_+	response regulator-like transcription factor HsrA	NA	NA	NA	NA
WP_139541818.1\|509970_511014_-	DHH family phosphoesterase	NA	NA	NA	NA
WP_000717709.1\|511863_512280_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	1.9e-75	97.8
WP_139541554.1\|512316_513645_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1S5RHD5	Helicobacter_phage	1.3e-191	93.5

DBSCAN-SWA_3

1373873 : 1392467

Helicobacter_phage(87.5%)

transposase,integrase

attL 1373074:1373089|attR 1390748:1390763

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1373074:1373089	attL	NA	NA	NA	NA
WP_000813733.1\|1373873_1374287_-	nucleoside-diphosphate kinase	A0A0G2Y5H2	Acanthamoeba_polyphaga_mimivirus	9.3e-19	39.7
WP_139542375.1\|1374353_1375511_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	6.9e-120	56.6
WP_139542376.1\|1375809_1376223_+	hypothetical protein	A0A1S5RG53	Helicobacter_phage	1.1e-19	72.7
WP_139542377.1\|1376331_1377480_+\|integrase	tyrosine-type recombinase/integrase	A0A1S5REX0	Helicobacter_phage	1.2e-188	88.5
WP_139542378.1\|1377476_1377689_+	hypothetical protein	A0A1S5RGY6	Helicobacter_phage	2.7e-30	98.6
WP_139542379.1\|1377690_1377999_+	hypothetical protein	A0A1S5RGY3	Helicobacter_phage	6.0e-47	89.2
WP_000717709.1\|1378228_1378645_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	1.9e-75	97.8
WP_139541582.1\|1378681_1380010_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1S5RHD5	Helicobacter_phage	1.1e-190	93.3
WP_139542380.1\|1380957_1381224_+	hypothetical protein	A0A1S5RGN6	Helicobacter_phage	4.9e-21	64.8
WP_139542381.1\|1381233_1382409_+	helicase DnaB	A0A1S5RH16	Helicobacter_phage	6.0e-212	92.8
WP_139542382.1\|1382405_1383992_+	DNA primase	A0A1S5RH32	Helicobacter_phage	6.7e-283	93.7
WP_139542383.1\|1383988_1385737_+	UV radiation resistance protein	A0A1S5RF93	Helicobacter_phage	4.7e-136	83.6
WP_139542384.1\|1385804_1390670_+	DUF3519 domain-containing protein	A0A1S5RH15	Helicobacter_phage	0.0e+00	93.3
WP_139542584.1\|1390686_1391088_+	hypothetical protein	A0A1S5RF70	Helicobacter_phage	2.1e-60	86.5
1390748:1390763	attR	NA	NA	NA	NA
WP_139542385.1\|1391084_1391672_+	hypothetical protein	A0A1S5REZ9	Helicobacter_phage	1.4e-97	96.9
WP_139542386.1\|1391909_1392467_+	Coiled-coil domain-containing protein	A0A1S5RGZ3	Helicobacter_phage	2.9e-92	95.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP032473

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection