| NZ_CP032475.1|WP_000238148.1|939145_940090_+|pyruvate-ferredoxin-oxidoreductase-subunit-beta |
gnl|CDD|239471 |
cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
|
3.86696e-136 |
| NZ_CP032475.1|WP_139532292.1|926460_927087_-|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase |
gnl|CDD|273490 |
TIGR01182, KHG/KDPG_aldolase_., Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida [Amino acid biosynthesis, Glutamate family, Energy metabolism, Entner-Doudoroff].
|
6.47624e-112 |
| NZ_CP032475.1|WP_139532294.1|928997_930275_+|glucose-6-phosphate-dehydrogenase |
gnl|CDD|223441 |
COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism].
|
0 |
| NZ_CP032475.1|WP_001879009.1|924891_925320_+|IS200/IS605-family-transposase |
gnl|CDD|376616 |
pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.
|
1.69637e-40 |
| NZ_CP032475.1|WP_000656165.1|937507_937900_+|4Fe-4S-binding-protein |
gnl|CDD|236596 |
PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta; Reviewed.
|
1.23557e-83 |
| NZ_CP032475.1|WP_139532300.1|935990_936653_-|outer-membrane-beta-barrel-protein |
gnl|CDD|280099 |
pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.
|
9.99359e-37 |
| NZ_CP032475.1|WP_139531985.1|923538_924822_-|IS200/IS605-family-element-transposase-accessory-protein-TnpB |
gnl|CDD|223747 |
COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].
|
4.66915e-62 |
| NZ_CP032475.1|WP_139532305.1|942430_944407_-|excinuclease-ABC-subunit-B |
gnl|CDD|235395 |
PRK05298, PRK05298, excinuclease ABC subunit UvrB.
|
0 |
| NZ_CP032475.1|WP_139532301.1|936931_937492_+|pyruvate-flavodoxin-oxidoreductase-subunit-gamma |
gnl|CDD|180284 |
PRK05844, PRK05844, pyruvate flavodoxin oxidoreductase subunit gamma; Validated.
|
8.89901e-128 |
| NZ_CP032475.1|WP_139546103.1|937909_939133_+|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha |
gnl|CDD|181999 |
PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha.
|
0 |
| NZ_CP032475.1|WP_139532293.1|927105_928932_-|phosphogluconate-dehydratase |
gnl|CDD|130264 |
TIGR01196, Phosphogluconate_dehydratase, 6-phosphogluconate dehydratase. A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This model includes mocB above the trusted cutoff, although the designation is somewhat tenuous. [Energy metabolism, Entner-Doudoroff].
|
0 |
| NZ_CP032475.1|WP_139532297.1|932135_933182_+|alcohol-dehydrogenase-catalytic-domain-containing-protein |
gnl|CDD|176186 |
cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.
|
6.95608e-164 |
| NZ_CP032475.1|WP_139532296.1|930955_931966_+|glucokinase |
gnl|CDD|129832 |
TIGR00749, Glucokinase_Glucose_kinase., glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models. [Energy metabolism, Glycolysis/gluconeogenesis].
|
0 |
| NZ_CP032475.1|WP_139532304.1|941586_942420_+|outer-membrane-beta-barrel-protein |
gnl|CDD|280099 |
pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.
|
6.26213e-34 |
| NZ_CP032475.1|WP_139532303.1|940198_941521_+|adenylosuccinate-lyase |
gnl|CDD|181437 |
PRK08470, PRK08470, adenylosuccinate lyase; Provisional.
|
0 |
| NZ_CP032475.1|WP_139532306.1|944476_945160_-|hypothetical-protein |
gnl|CDD|139585 |
PRK13460, PRK13460, F0F1 ATP synthase subunit B; Provisional.
|
0.00345394 |
| NZ_CP032475.1|WP_139532291.1|925518_926391_-|Sel1-like-repeat-protein-HcpC |
gnl|CDD|223861 |
COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].
|
6.01122e-50 |
| NZ_CP032475.1|WP_139532295.1|930285_930969_+|6-phosphogluconolactonase |
gnl|CDD|273494 |
TIGR01198, 6-phosphogluconolactonase_6PGL., 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with [Energy metabolism, Pentose phosphate pathway].
|
1.5535e-91 |
