CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP032476	Helicobacter pylori strain 381-C-EK1 chromosome, complete genome	2 crisprs	cas14j,DEDDh,cas3	0	0	0	0

Cas Category Instructions

Results visualization

1. NZ_CP032476

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP032476_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP032476_1

252382-252478

Orphan

Consensus_repeat	Method
AAGAAAACGAATTTCAAATGAAGAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP032476_1

>merge|NZ_CP032476|1|252382-252478|CRISPRCasFinder
AAGAAAACGAATTTCAAATGAAGAAAACGAATTTCAATTAAAAAATAAGCTTCGCATGAGACACTAACGCAAGAAAACGAATTTCAAATGAATAAAA

>NZ_CP032476|1|1|252382-252478|CRISPRCasFinder
AAGAAAACGAATTTCAAATGAAGAAAA	CGAATTTCAATTAAAAAATAAGCTTCGCATGAGACACTAACGC
AAGAAAACGAATTTCAAATGAATAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP032476.1\|WP_139546104.1\|259858_263830_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|111576
NZ_CP032476.1\|WP_000003589.1\|249397_250126_+\|hydrogenase-nickel-incorporation-protein-HypB	unknown	unknown	gnl\|CDD\|272891
NZ_CP032476.1\|WP_139532313.1\|257210_258059_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187632
NZ_CP032476.1\|WP_000973846.1\|249159_249288_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032476.1\|WP_139532321.1\|243931_245473_-\|flagellar-hook-length-control-protein-FliK	unknown	unknown	gnl\|CDD\|376734
NZ_CP032476.1\|WP_139532315.1\|255832_256198_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032476.1\|WP_139532318.1\|248849_249149_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380358
NZ_CP032476.1\|WP_139532319.1\|247550_248432_+\|acetate/propionate-family-kinase	unknown	unknown	gnl\|CDD\|234680
NZ_CP032476.1\|WP_000921458.1\|258051_259032_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP032476.1\|WP_139532324.1\|240486_241110_-\|restriction-endonuclease	unknown	unknown	unknown
NZ_CP032476.1\|WP_100978401.1\|256546_257071_-\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|224523
NZ_CP032476.1\|WP_000242355.1\|259031_259799_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP032476.1\|WP_000335439.1\|250125_250362_+\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	unknown	unknown	gnl\|CDD\|223375
NZ_CP032476.1\|WP_139532316.1\|252722_254915_+\|Hop-family-adhesin-BabA	unknown	unknown	gnl\|CDD\|375731
NZ_CP032476.1\|WP_139532317.1\|250376_251489_+\|hydrogenase-formation-protein-HypD	unknown	unknown	gnl\|CDD\|272892
NZ_CP032476.1\|WP_139532312.1\|264117_265515_-\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP032476.1\|WP_033588527.1\|241161_242979_-\|flagellar-hook-protein-FlgE	unknown	unknown	gnl\|CDD\|235620
NZ_CP032476.1\|WP_139532322.1\|242975_243881_-\|flagellar-hook-assembly-protein-FlgD	unknown	unknown	gnl\|CDD\|235621
NZ_CP032476.1\|WP_139532311.1\|265515_266976_-\|murein-biosynthesis-integral-membrane-protein-MurJ	unknown	unknown	gnl\|CDD\|367301
NZ_CP032476.1\|WP_139532314.1\|256178_256439_+\|YafQ-family-addiction-module-toxin	unknown	unknown	gnl\|CDD\|379750

Protein	Function_ID	Function_description	E-value
NZ_CP032476.1\|WP_000003589.1\|249397_250126_+\|hydrogenase-nickel-incorporation-protein-HypB	gnl\|CDD\|272891	TIGR00073, nickel_incorporation_protein_HypB, hydrogenase accessory protein HypB. A GTP hydrolase for assembly of nickel metallocenter of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel. hits scoring 75 and above are safe as orthologs. [SS 1/05/04 I changed the role_ID and process GO from protein folding to to protein modification, since a protein folding role has not been established, but HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.] [Protein fate, Protein modification and repair].	1.32809e-108
NZ_CP032476.1\|WP_139532313.1\|257210_258059_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187632	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs. 17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.99528e-90
NZ_CP032476.1\|WP_139532314.1\|256178_256439_+\|YafQ-family-addiction-module-toxin	gnl\|CDD\|379750	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ. YafQ is a family of bacterial toxin ribonucleases of type II toxin-antitoxin systems. The E.coli gene is expressed from the dinB operon. The cognate antitoxin for the E. coli protein is DinJ, in family RelB_antitoxin, pfam02604.	1.65907e-30
NZ_CP032476.1\|WP_139532321.1\|243931_245473_-\|flagellar-hook-length-control-protein-FliK	gnl\|CDD\|376734	pfam02120, Flg_hook, Flagellar hook-length control protein FliK. This is the C terminal domain of FliK. FliK controls the length of the flagellar hook by directly measuring the hook length as a molecular ruler. This family also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems.	1.80348e-12
NZ_CP032476.1\|WP_139532318.1\|248849_249149_+\|cupin-domain-containing-protein	gnl\|CDD\|380358	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain. This family includes prokaryotic and archaeal proteins homologous to HP0902, a functionally uncharacterized protein from Helicobacter pylori and Spy1581, a protein of unknown function from Streptococcus pyogenes. These proteins demonstrate all-beta cupin folds that cannot bind metal ions due to the absence of a metal-binding histidine that is conserved in many metallo-cupins. HP0902 is able to bind bacterial endotoxin lipopolysaccharides (LPS) through its surface-exposed loops, where metal-binding sites are usually found in other metallo-cupins, and thus may have a putative role in H. pylori pathogenicity.	4.16573e-19
NZ_CP032476.1\|WP_139532319.1\|247550_248432_+\|acetate/propionate-family-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	3.39762e-175
NZ_CP032476.1\|WP_000921458.1\|258051_259032_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	2.2564e-66
NZ_CP032476.1\|WP_139532311.1\|265515_266976_-\|murein-biosynthesis-integral-membrane-protein-MurJ	gnl\|CDD\|367301	pfam03023, MVIN, MviN-like protein. Deletion of the mviN virulence gene in Salmonella enterica serovar. Typhimurium greatly reduces virulence in a mouse model of typhoid-like disease. Open reading frames encoding homologs of MviN have since been identified in a variety of bacteria, including pathogens and non-pathogens and plant-symbionts. In the nitrogen-fixing symbiont Rhizobium tropici, mviN is required for motility. The MviM protein is predicted to be membrane-associated.	1.10653e-115
NZ_CP032476.1\|WP_100978401.1\|256546_257071_-\|acyl-CoA-thioesterase	gnl\|CDD\|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	5.74403e-64
NZ_CP032476.1\|WP_139546104.1\|259858_263830_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|111576	pfam02691, VacA, Vacuolating cyotoxin. This family consists of Vacuolating cyotoxin proteins form Proteobacteria. These proteins are an important virulence determinate in H. pylori and induce cytoplasmic vacuolation in a variety of mammalian cell lines.	0
NZ_CP032476.1\|WP_000335439.1\|250125_250362_+\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	gnl\|CDD\|223375	COG0298, HypC, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones].	3.25163e-31
NZ_CP032476.1\|WP_139532316.1\|252722_254915_+\|Hop-family-adhesin-BabA	gnl\|CDD\|375731	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain. This is the N-terminal extracellular adhesion domain of Sialic acid binding adhesin (SabA) present in Helicobacter pylori. The N-terminal domain of SabA functions as a sugar-binding adhesion domain with conserved disulfide bonds. Notably, these amino acid residues are not only conserved among SabA orthologs but also between SabA and BabA.	1.09839e-75
NZ_CP032476.1\|WP_139532317.1\|250376_251489_+\|hydrogenase-formation-protein-HypD	gnl\|CDD\|272892	TIGR00075, Hydrogenase_isoenzymes_formation_protein_HypD, hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea. [Protein fate, Protein modification and repair].	0
NZ_CP032476.1\|WP_139532312.1\|264117_265515_-\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP032476.1\|WP_033588527.1\|241161_242979_-\|flagellar-hook-protein-FlgE	gnl\|CDD\|235620	PRK05841, flgE, flagellar hook protein FlgE; Validated.	0
NZ_CP032476.1\|WP_139532322.1\|242975_243881_-\|flagellar-hook-assembly-protein-FlgD	gnl\|CDD\|235621	PRK05842, flgD, flagellar hook assembly protein FlgD.	9.27094e-178
NZ_CP032476.1\|WP_000242355.1\|259031_259799_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.01119e-98

>NZ_CP032476.1|WP_139532317.1|250376_251489_+|hydrogenase-formation-protein-HypD
MSVDHLISPFRDKRTLLVLSNAIKKLASKLEKKLVIMEVCGGHTHSIMKYGLLDLMPNNLEFVHGPGCPVCVMPRARLDEAYELATIKDSIILSLGDMMKVPGSYGSLIQAREKGLDARFLYSPMQALEIAKENPTKKVIYIAIGFETTTPMTASVLLNAKKEKINNLFFHINHILVPPSVSAILKDPACQINALLAPSHVSVISGAQIYSPLVDRFKLPIIVSGFEPVDILESVLMLIKQALNKEAKLEIQYKRAVSYEGNVKAQELVNACMEVRENFEWRGLGNIKHSALKLKEIFASYDAEKVFKEHLTHKITKENKACKCAEILKGIAKPLDCSLFATTCTPQNPIGSCMVSSEGACAAYYRYKRV
>NZ_CP032476.1|WP_000335439.1|250125_250362_+|HypC/HybG/HupF-family-hydrogenase-formation-chaperone
MCLAIPSKVIAIKDNVALLETLGVQREASLDLMGESVKVGDYVLLHIGYVMSKIDEKEALESIELYQEMIAKMNETHE
>NZ_CP032476.1|WP_000003589.1|249397_250126_+|hydrogenase-nickel-incorporation-protein-HypB
MSEQRKESLQNNPNLSKKDVKIVEKILSKNDIKAAEMKERYLKEGLYVLNFMSSPGSGKTTMLENLADFKDFKFCVVEGDLQTNRDADRLRKKGVSAHQITTGEACHLEASMIEGAFDLLKDEGALEKSDFLIIENVGNLVCPSSYNLGAAMNIVLLSVPEGDDKVLKYPTMFMCADAVIISKADMIEVFNFRVSQVKEDMQKLKPEAPIFLMSSKDPKSLEDFKNFLLEKKRENYQSTHSF
>NZ_CP032476.1|WP_000973846.1|249159_249288_+|hypothetical-protein
MMKAVFINVWYLLLTIILLIIIWRIIKLVLKDKNDSDDKGLG
>NZ_CP032476.1|WP_139532318.1|248849_249149_+|cupin-domain-containing-protein
MEVINFLEGVHFEKLHIEALNENSSNKEIRICMPKGAVMDKHKAPGAISVQVLEGKIIFEAENEKIEMPKGALISLEAQVLHRLDALENSVIRLSLSKK
>NZ_CP032476.1|WP_139532319.1|247550_248432_+|acetate/propionate-family-kinase
MEILVLNLGSSSIKFKLFDMKENKPLASGLAEKIGEEIGQLKIKSHLHHNDQELKEKLVIKDHASGLLMIRENLTKMEIIKDFNQIDAIGHRVVQGGDKFHAPVLVDEKVMQEIGNLSILAPLHNPANLAGIEFVQKAHPHIPQIAVFDTTFHATMPSYAYMYALPYELYEKYQIRRYGFHGTSHHYVAKEAAKFLNIAYEKFNAISLHLGNGSSAAAIQKGKSVDTSMGLTPLEGLIMGTRCGDIDPTVVEYIAQCANKSLEEVMKMLNHESGLKGIGGDNEKHRSQKRKRR
>NZ_CP032476.1|WP_139532321.1|243931_245473_-|flagellar-hook-length-control-protein-FliK
MPSPINPIHTNANALNSGAKNEVKDTKNAPKSTSKDFSKILNQKISKDKTAPKESLNHSALKDTPKDALKDKLEKTPTPQPQHAQNPAKDQQAPTLKDWLNHKKTTALHEAQHENHETNPKTPNETLNKNEKKPNEALSNAHQTNLLSKNPITPTNRTNNAIKNPTTPTHNAKDPKTLKDIQTLSQKHDLNASNIQAATTPENKTPLNASDHLALKTTQTPINHTLAKNDTKNTANLSSVLQSLEKKEPHNKEHANPPNNEKKTPPLKEALPMNAIKRDKTLYKKKPEKTPTKTQTTTPSATPENALKIPLKTPPLMPLIGANPPNDNIPTPPEKEETTQEISDNKEKAKETNSSAQSAQNTQASDKTSENKSIAPKETIKHFTQQLKQEIQEYKPPMSRISMDLFPKELGKVEVIIQKVGKNLKVSVISHNNSLQTFLDNQQDLKNSLNALGFEGVDLSFSQDSSKEQPKEPLKELFKEQESTPLKENALKSYQENTDHEHKETSMQITLYA
>NZ_CP032476.1|WP_139532322.1|242975_243881_-|flagellar-hook-assembly-protein-FlgD
MAIDLAEVTGAKAAQERKKEQPTIANGLDKNAFMKLFLEQLKNQDPTAPMETDKIITQTAQLTQVEMQEENKKTMQEVASAMKSNKETNESLKDFQGALKDTMENLNKGMDDSLKANNALREVSALNSVSMIGKIAETDVSGANFDGNNKLSFSLFFDEKIDASKGVPAIQILNENNELVKTIPLKDYNGQKGYINFEWDGTNEKGEKVPKGNYKIKAEYNLDSHSKQYLQTRIGRGEVESVIFDKGKPMLRMGEMILPIDSAIEFYQPDQKPLDQKLSDQKLSDQKPIDQKPQTPPKETA
>NZ_CP032476.1|WP_033588527.1|241161_242979_-|flagellar-hook-protein-FlgE
MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVANDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEMTINKDGFSKKQDNFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQIPQDLTYQPVLSTKVGISVNLNPKDHLKGVQDFFLNDKGEIIKERFLNQDINALANDDNEPIDAITNRKLNISIQKEDGKKEDFVFTYGDAEKGENQFKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSQTPITFSLSGGIADKLGLKADGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMTNSNDPTSSPTSKRKNQTWEVKSYIADPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFKGNKLTYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK
>NZ_CP032476.1|WP_139532324.1|240486_241110_-|restriction-endonuclease
MIPTQLNEIAEFLKTNPYNLSQPLQDGCLNSSVNEEEILNTIKDYFPIQLPKAREWWDFSFEENDIFYPVNIKTTTTKTADNLNCKLGIYYALCGLLPEFNNEIAWEKYFQKLHKDLGKNTDRDYYFLIINKNDPKDIFINSLKGIQTLQPNGNNLPFQCKWDNNREIVQRDFDESKNSILSTLAKSVTLRANIYLAFKEVFGEFFE
>NZ_CP032476.1|WP_139532316.1|252722_254915_+|Hop-family-adhesin-BabA
MLHAEDDGFYMSAGYQIGEAAQMVTNTKGIQQLSDNYENLSKLLTRYSTLNTLIKLSADPSAINAARENLGASAKNLIGDKANSPAYQAVLLAINAAVGFWNVVGYVSQCGGNMNGQKSTSSTTIFNNEPGYRSTSITCSLNGYQPGFQGPISIENFKKINEAYQILQTALKKGLPALKENNGTVNVSYTYTCSGEGNNNCSKEATGVDNQNGGTKTETQTIDGKRVTTTISSKVVDSTASGNTSHVSYTEITNKLDGVPDSAQALLAQASTLINTINSACPWFSATSSSSPNAPQWKWNAHSGGLCGAFKDEISAIQKMITDAQELVNQTSVINEHEQSTTIGNNNGKPFNPFTDASFAQGMLANASAQAKMLNLAHQVGQTLNPENLTGNFQYFVKEYLATCNNKSTAGTGGTQGSPPGTVTTQTFASGCAYVEQTITNLTNSIAHFGTQEQQIQQAENIADTLVNFKSRYSELGNTYNSITTALSKVPNGSSLQNAVSKKNNPYSPQGIDTNYYLNQNSYNQIQTINQELGRNPFRKVGIVGSQTNNGAMNGIGIQVGYKQFFGQKRRWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSVGLFGGIALAGTSWLNSEYVNLATMNNVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGVKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY
>NZ_CP032476.1|WP_139532315.1|255832_256198_+|hypothetical-protein
MPNTTNKDYTKYSQRQLFNLMNKKEQEIEKLKRDRAYLEKKMAKELEKKDKGFTIKLEELNKILQEINKRANDCCFGHETPNIQTQQAMRDVYNKETDLIVEDFSSYSDERKRALGVEAQP
>NZ_CP032476.1|WP_139532314.1|256178_256439_+|YafQ-family-addiction-module-toxin
MLKLNLKKSFQKDFDKLLLNGFDDSVLNEVILRKKEPLDPPFKDHALKGKWKPFRECHIKADILLVYLVEDDELILLRLGSHSELF
>NZ_CP032476.1|WP_100978401.1|256546_257071_-|acyl-CoA-thioesterase
MPHIQSSHSSHFDFTIDTADRTKLLMSYLVVPTTANFNNVMHGGELLNLLDKVAYVCSTRYCAKGTVTLSVDGVTFKYPIPVGNLLTFLASINYVGNTSCEVGIKVLSEDIKTREITHTNSCYFTMVAVENGKPTPMPKYEPKTEVEIRRYEGALKRKEMRTRGYLKSGKHEGV
>NZ_CP032476.1|WP_139532313.1|257210_258059_+|SDR-family-NAD(P)-dependent-oxidoreductase
MGEKKESQKVAVITGASSGIGLECALILLDQGYKVYALSRHATLCVALNHALCESIDIDVSDSNALKEVFSNISTKEDHCDVLINSAGYGVFGSVEDTPIEEVKKQFGVNFFALCEVVQLCLPLLKNKPYSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNVQVCLIEPGPVKSNWEKTAFSVENFESEDSLYALEVNAAKTFYASVYENALSAKAVAQKIVFLSMSQKIKARYLIGLKTQLLLALYRILPSSWYDSLFRLIVLKRKRDA
>NZ_CP032476.1|WP_000921458.1|258051_259032_+|iron-ABC-transporter-permease
MLKTYHIALACVILAVVVLLFGGESLSLEEWQEVCLNVKNHFLHNEELSSLSIIILEIRLPRVILALLVGASLSGSGVVMQTIFRNPLVDPFLLGISSGAMLGVAMAIAVVESNIAILAFFGAILASLAVLAMNRVLGNSVLSLVLSGVVLSAFLSALAGAIKFFVIPQKAQAIVVWLLGSLSLSSYKDCLIAFIGLSLGFIPLFLLRWRINLLSLSDAQSLSLGINPVLLRSLCLVCVSVASALAVSVSGTIGWIGLVIPHVARLFFGANLQKLLLSSLLMGAFFLLLADVVAKTITPYDLPVGIATSVLGAPFFLWLLFRTRGV
>NZ_CP032476.1|WP_000242355.1|259031_259799_+|ABC-transporter-ATP-binding-protein
MVLEVKNLSFKYSQKLILDKLSFSVPKNSITSILAPNGSGKTTLLKCLLGLLKPLEETEIKACNKDILPLKPYEKAKLIAYIPQVEYYAFNFSVLDFVLMGKATHLNLFAMPKAKHIKEATSVLERLDLESLKDQGINDLSGGQRQMVLLARSLLQRTPLLLLDEPTSALDLKNQALFFDAIKDEMKKRELSVLVNIHDPNLVARHSTHVVMLKDKKLFLQASTPIAMTSHNLSVLYDTPLEAIWHDNKLVVYAL
>NZ_CP032476.1|WP_139546104.1|259858_263830_-|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MEIQQTHRKINRPLVSLALVGALISITPQQSHAAFFTTVIIPAIVGGIATGTAVGTVSGLLSWGLKQAEEANKTPDKPDKVWRIQAGRGFNEFPNKEYDLYRSLLSSKIDGGWDWGNAARHYWVKGGQWNKLEVDMQNAVGTYKLSGLRNFTGGDLDVNMQKATLRLGQFNGNSFTSYKDSADRTTRVDFNAKNILIDNFLEINNRVGSGAGRKASSTVLTLQASEGITSSKNAEISLYDGATLNLASSSVKLMGNVWMGRLQYVGAYLAPSYSTINTSKVTGEVNFNHLTVGDHNAAQAGIIASNKTHIGTLDLWQSAGLNIIAPPEGGYKDKPKDKPSNTTQNNANNNQQNSTQNNNNTSVINPPNSAQKTEIQPTQVIDGPFAGGKNTVVNINRINTNADGTIRVGGYKASLTTNAAHLHIGKGGVNLSNQASGRSLLVENLTGNITVDGPLRVNNQVGGAAVAGSSANFEFKAGADTNNATATFNNDIHLGKAVNLRVDAHTAYFNGNIYLGKSTNLRVNGHSAHFKNIDASKSDNGLNTSALDFSGVTDKVNINKLTTSATNVNVKNFDIKELVVTTRVQSFGQYTIFGENIGDKSRIGVVSLQTGYSPAYSGGVTFKSGKKLVIDEIYHAPWNYFDARNVTDVEINKRILFGAPGYIAGKTGLMFNNLTLNSNASMDYGKDLDLTIQGHFTNNQGTMNLFVQDGRVATLNAGHQASMIFNNLVDSATGFYKPLIKINNAQNLTKNKEHVLVKARNIDYNLVGVQGASYDNISASNTNLQEQFKERLALYNNNNRMDICVVRKNNLNDIKACGMAIGNQSMVNNPENYKYLEGKAWKNTGINKTANNTTIAVNLGNNSAPTSSESNTTNLPTNTTNNARFASYALIKNAPFARYSTTPNLVAINQHDFGTIESVFELADRSSDIDTLYANSGAQGRDLLQTLLIDSHDAGYARTMIDATSANEITKQLNAATTTLNNIASLEHKTSGLQTLSLSNAMILNSRLVNLSRRHTNNINSFAQRLQALKDQKFASLESAAEVLYQFAPKYEKPTNVWANAIGGASLNNGGNASLYGTSAGVDAYLNGQVEAIVGGFGSYGYSSFNNRANSLNSGANNTNFGVYSRIFANQHEFDFEAQGALGSDQSSLNFKSALLRDLNQSYNYLAYSAATRASYGYDFAFFRNALVLKPSVGVSYNHLGSTNFKSNSTNQVALSNGSSSQHLFNASANVEARYYYGDTSYFYMNAGVLQEFARFGSNNAASLNTFKVNAARNPLNTHARVMMGGELQLAKEVFLNLGFVYLHNLISNIGHFASNLGMRYSF
>NZ_CP032476.1|WP_139532312.1|264117_265515_-|cysteine--tRNA-ligase
MFIYDTKLKQKVPFEPLVEKKANIYVCGPTVYDDAHLGHARSAIAFDLLRRTLELSGYEVVLVRNFTDIDDKIINKALKENKSIQELSSIYIESYTRDLNALNVKKPSLEPKASEYLDAMVRMIETLLEKNIAYRVSNGDIYLDTSKDKDYGSLSVHNSSIEFGRIGLVQEKRLEQDFVLWKSYKGDNDVGFDSPLGKGRPGWHIECSSMIFETLALTNTPYQIDIHAGGADLLFPHHENEACQTRCAFGVEIAKYWMHNGFVNINNEKMSKSLGNSFFVKDALKNYDGEILRNYLLGVHYRSVLNFNEEDLLVSKKRLDKIYRLKQRVLGTLGGINPNFKKEILECMQDDLNVSKALSVLESMLSSTNEKLDQNPKNKALKGEILANLKFIEELLGIGFKDPSAYFQLGVSESEKQEIENKIEERKRAKEQKDFLKADSIREELLNHKIALMDTPQGTIWEKFF
>NZ_CP032476.1|WP_139532311.1|265515_266976_-|murein-biosynthesis-integral-membrane-protein-MurJ
MLKKIFLTNSLGILCSRIFGFLRDLMMANILGAGVYSDIFFVAFKLPNLFRRIFAEGSFSQSFLPSFIRSSIKGSFAGLVGLIFCGVLLVWCLLVVLNPLWLTKLLAYGFDEETLKLCAPIVAINFWYLLLVFITTFLGALLQYKHSFFASAYSTSLLNLCMILALFISKEKTHLEALYYLSYGVLLGGVAQILLHFYPLIKLGLLNLLFKGLLSFKTKNALKKEYRSKRAKKDLKAFFKQFLPSVLGNSSAQIASFLDTTIASFLASGSVSYLYYANRVFQLPLALFAIAISSALFPSIAIALKNNQQDLILQRLQKAWFFLVGVLLLCSIGGIMLSKEITELLFERGQFSPKDTLITSQVFSLYLLGLLPFGLTKLFSLWLYAKLEQKKAAKISLISLFLGLAASLSLMPLLGVLGLALANSLSGLFLFVLTIKAFGFQPFLGIIKNLKLWLVILFLACVEILLLLAFKSWVTHLYLFYYFQGF

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Crispr_ID: NZ_CP032476_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP032476_2

283592-283677

TypeV

Consensus_repeat	Method
GTTCTTGAACCACTACTTCTCGCATG	CRISPRCasFinder

1 spacers

cas14j

The CRISPR arrays of NZ_CP032476_2

>merge|NZ_CP032476|2|283592-283677|CRISPRCasFinder
GTTCTTGAACCACTACTTCTCGCATGCCCATGCAGAGATTAAAGAAAACTCCCTTGAAGCGTTCTTGAACCACTACTTCTCGCATG

>NZ_CP032476|2|2|283592-283677|CRISPRCasFinder
GTTCTTGAACCACTACTTCTCGCATG	CCCATGCAGAGATTAAAGAAAACTCCCTTGAAGC
GTTCTTGAACCACTACTTCTCGCATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP032476.1\|WP_139532300.1\|280384_281047_+\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|280099
NZ_CP032476.1\|WP_000656165.1\|279137_279530_-\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|236596
NZ_CP032476.1\|WP_139532305.1\|272630_274607_+\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NZ_CP032476.1\|WP_139532292.1\|289950_290577_+\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	unknown	unknown	gnl\|CDD\|273490
NZ_CP032476.1\|WP_001879009.1\|291717_292146_-\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|376616
NZ_CP032476.1\|WP_000238148.1\|276947_277892_-\|pyruvate-ferredoxin-oxidoreductase-subunit-beta	unknown	unknown	gnl\|CDD\|239471
NZ_CP032476.1\|WP_139532299.1\|281053_282361_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032476.1\|WP_139532301.1\|279545_280106_-\|pyruvate-flavodoxin-oxidoreductase-subunit-gamma	unknown	unknown	gnl\|CDD\|180284
NZ_CP032476.1\|WP_139532293.1\|288105_289932_+\|phosphogluconate-dehydratase	unknown	unknown	gnl\|CDD\|130264
NZ_CP032476.1\|WP_139532297.1\|283855_284902_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl\|CDD\|176186
NZ_CP032476.1\|WP_139532306.1\|271877_272561_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|139585
NZ_CP032476.1\|WP_139532304.1\|274617_275451_-\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|280099
NZ_CP032476.1\|WP_139532295.1\|286068_286752_-\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|273494
NZ_CP032476.1\|WP_139532290.1\|293688_293877_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032476.1\|WP_139532296.1\|285071_286082_-\|glucokinase	unknown	unknown	gnl\|CDD\|129832
NZ_CP032476.1\|WP_139532303.1\|275516_276839_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|181437
NZ_CP032476.1\|WP_139532294.1\|286762_288040_-\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223441
NZ_CP032476.1\|WP_139532291.1\|290646_291519_+\|Sel1-like-repeat-protein-HcpC	unknown	unknown	gnl\|CDD\|223861
NZ_CP032476.1\|WP_139546103.1\|277904_279128_-\|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181999
NZ_CP032476.1\|WP_139531985.1\|292215_293499_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	cas14j	-	gnl\|CDD\|223747

Protein	Function_ID	Function_description	E-value
NZ_CP032476.1\|WP_139532300.1\|280384_281047_+\|outer-membrane-beta-barrel-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	9.99359e-37
NZ_CP032476.1\|WP_000656165.1\|279137_279530_-\|4Fe-4S-binding-protein	gnl\|CDD\|236596	PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta; Reviewed.	1.23557e-83
NZ_CP032476.1\|WP_139532305.1\|272630_274607_+\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP032476.1\|WP_139532292.1\|289950_290577_+\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	gnl\|CDD\|273490	TIGR01182, KHG/KDPG_aldolase_., Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida [Amino acid biosynthesis, Glutamate family, Energy metabolism, Entner-Doudoroff].	6.47624e-112
NZ_CP032476.1\|WP_000238148.1\|276947_277892_-\|pyruvate-ferredoxin-oxidoreductase-subunit-beta	gnl\|CDD\|239471	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.	3.86696e-136
NZ_CP032476.1\|WP_139532304.1\|274617_275451_-\|outer-membrane-beta-barrel-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	6.26213e-34
NZ_CP032476.1\|WP_139532301.1\|279545_280106_-\|pyruvate-flavodoxin-oxidoreductase-subunit-gamma	gnl\|CDD\|180284	PRK05844, PRK05844, pyruvate flavodoxin oxidoreductase subunit gamma; Validated.	8.89901e-128
NZ_CP032476.1\|WP_139532293.1\|288105_289932_+\|phosphogluconate-dehydratase	gnl\|CDD\|130264	TIGR01196, Phosphogluconate_dehydratase, 6-phosphogluconate dehydratase. A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This model includes mocB above the trusted cutoff, although the designation is somewhat tenuous. [Energy metabolism, Entner-Doudoroff].	0
NZ_CP032476.1\|WP_139532297.1\|283855_284902_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	6.95608e-164
NZ_CP032476.1\|WP_139532306.1\|271877_272561_+\|hypothetical-protein	gnl\|CDD\|139585	PRK13460, PRK13460, F0F1 ATP synthase subunit B; Provisional.	0.00345394
NZ_CP032476.1\|WP_139532295.1\|286068_286752_-\|6-phosphogluconolactonase	gnl\|CDD\|273494	TIGR01198, 6-phosphogluconolactonase_6PGL., 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with [Energy metabolism, Pentose phosphate pathway].	1.5535e-91
NZ_CP032476.1\|WP_001879009.1\|291717_292146_-\|IS200/IS605-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	1.69637e-40
NZ_CP032476.1\|WP_139532296.1\|285071_286082_-\|glucokinase	gnl\|CDD\|129832	TIGR00749, Glucokinase_Glucose_kinase., glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models. [Energy metabolism, Glycolysis/gluconeogenesis].	0
NZ_CP032476.1\|WP_139532303.1\|275516_276839_-\|adenylosuccinate-lyase	gnl\|CDD\|181437	PRK08470, PRK08470, adenylosuccinate lyase; Provisional.	0
NZ_CP032476.1\|WP_139532294.1\|286762_288040_-\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|223441	COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism].	0
NZ_CP032476.1\|WP_139532291.1\|290646_291519_+\|Sel1-like-repeat-protein-HcpC	gnl\|CDD\|223861	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].	6.01122e-50
NZ_CP032476.1\|WP_139546103.1\|277904_279128_-\|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha	gnl\|CDD\|181999	PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha.	0
NZ_CP032476.1\|WP_139531985.1\|292215_293499_+\|IS200/IS605-family-element-transposase-accessory-protein-TnpB	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.66915e-62

>NZ_CP032476.1|WP_139532299.1|281053_282361_-|hypothetical-protein
MIFLKKSLYALLISSFSIPPLMKAASFVYDLKFMSFNFNLVAPNNNPYWNSLTKMQGRLMPQIGVQLDKRQALMFGAWFIQNLHTHYSYFPYSWGVTMYYQYIGKNLRFFLGIVPRSYQIGHYPLSAFKKLFWFIDPIFRGGAFQFKPAYDPNRWWNGWFEGVVDWYGGRNWNNQPKKKNYDFDQFLYFVSSEFQFLKGYLGLGGQLVIFHNASHHSMGDNYPYGGNSYLKPGDATPQWPNGYPYFSQKNNPQGGEIGKYSNPTILDRVYYHAYLKADFKNLMPYMDNIFMTFGTQSSQTHYCVRYASECKNARFYNSFGGEFYAQAQYKGFGIFNRYYFSNKPQMHFYATYGQSLYTGLPWYRAPNFDMIGLYYVYKNKWISVRADAFFNFLGGGDGYHLYGERGKWITTYQQFLTLTIDTRELIDFVKSKTSK
>NZ_CP032476.1|WP_139532300.1|280384_281047_+|outer-membrane-beta-barrel-protein
MDKTTVKILMGMALLSSLQAAEAELDEKSKKPKFADRNTFYLGVGYQLSAINTSFSTESVDKSYFMTGNGFGVVLGGKFVAKTQAVEHVGFRYGLFYDQTFSSHKSYISTYGLELSGLWDAFNSPKMFLGLEFGLGIAGATYMPGGAMHGIIAQNLGKENSLFQLLVKVGFRFGFFHNEITFGLKFPVIPNKRTEIIDGLSTTTLWHRLPVAYFNYIYNF
>NZ_CP032476.1|WP_139532301.1|279545_280106_-|pyruvate-flavodoxin-oxidoreductase-subunit-gamma
MFQIRWHARAGQGAITGAKGLADVISKTGKEVQAFASYGSAKRGSAMMAYNRVDDEPILNHERFMQPDYVLVIDPGLVFIENIFANEKEDTTYIITSYLNKEELFEKKPELKTRKVFLVDCLKISMETLKRPIPNTPMLGALMKVSGMLEIEAFKEAFKKVLGKKLTQEVIDANMLAIQRAYEEVQ
>NZ_CP032476.1|WP_000656165.1|279137_279530_-|4Fe-4S-binding-protein
MKDWNEFEMGAVLFPFEKNAQSEIEKHNDERHYTEQSYFTTSVAHWRVAKPVHNNNICINCFNCWVYCPDAAILSREGKLKGVDYSHCKGCGVCVDVCPTNPKSLWMFEEQIEPATALTQWPQKQEKKKS
>NZ_CP032476.1|WP_139546103.1|277904_279128_-|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha
MAKSIELQEIEVWDGNTASSNALRQAQIDVIAAYPITPSTPIVQNYGSFKDNGYVDGEFVLVESEHAAMSACVGAAAAGGRVSTATSSQGLALMVEVLYQASGMRLPIVLNLVNRALAAPLNIHGDHSDMYLSRDSGWVSLCTCNPQEAYDFTLMAFRIAEHQKVRVPTIVNQDGFLCSHTAQNVRPLSDAVAYQFVGEYQTKHSLLDFDKPVSYGAQAEEEWHYEHKAQLHHAIMSASSVIEEVFNDFAKLTGRQYHLTKTFQLEDAEIAIFALGTTYESAIVAAKEMRKKGIKAGVATIHSLRPFPYERLGQDLKNLKALAILDKSSPAGAMGAMFNEVTSAVYQTQGTKHPVVSNYIYGLGERDMTIVHLCEIFEEINEDALKGTLTHPTQQFVGLRGPKMSFF
>NZ_CP032476.1|WP_000238148.1|276947_277892_-|pyruvate-ferredoxin-oxidoreductase-subunit-beta
MVKEVKTLKGFSQSAEKFQGSHLLCPGCGHGIIVREVLNAVDGPIVLGNSTGCLEVCSAVYPHTSWDVPWIHIGFENGSTAISGVEAMYKALVNKGRYQGQKPKFVAFGGDGASYDIGFQFISGCMERGHDMTYICLDNENYANTGGQRSGSTPLGASTSTTPAGSVSFGKKEKKKDIVNIMASHGVPYVAQLSPNKWKDMNKKIKTALDTEGPCFINALSPCTTEWKFESNKTIELADMAVDSLMFPLFEIFNGRELKITYRPRNIIPVRDYLGAQKRFKHLFKKENEHIIEELQKDVNDRWEYLQRREEAKV
>NZ_CP032476.1|WP_139532303.1|275516_276839_-|adenylosuccinate-lyase
MLERYANEEMKALWNEQTKFETYLEVEKAVVRAWNKLGQIQDSDCEKICSKAAFNLERIKEIEKTTKHDLIAFTTCVAESLGEESRFFHYGITSSDCIDTAMALLMTKSLKLIQKGVKNLYETLKNRALEHKNTLMVGRSHGVFGEPITFGLVLALFADEIKRHLKALDLTMEFISVGAISGAMGNFAHAPLELEELACEFLGLKTANINNQVIQRDRYARLACDLALLASSCEKIAVNIRHLQRSEVYEVEEAFSTGQKGSSAMPHKRNPILSENITGLCRVIRSFTTPMLENVALWHERDMSHSSVERFALPDLFITSDFMLSRLNSVIENLMVYPKNMLKNLALSGGLVFSQRVLLELPKKGLSREESYSIVQENAMKIWEVLQQGAFKNSDENLFLNALLNDERLKKYLSEDEIKACFDYSYYTKNVGAIFKRVFE
>NZ_CP032476.1|WP_139532304.1|274617_275451_-|outer-membrane-beta-barrel-protein
MKRALYLILGLSYALHADSFKDVLTKGDYTFFNKKVVSPIKRYADRSAFYLGLGYQLGSIQHNYSNLNLSQQFNKSQIIFSDGLSPVFKNSYVSNGFGVQVGYKWVGKHEETKWFGFRWGLFYDLSTSLYGQKESQSIIISTYGTYMDLLLNAYNGDKFFAGFNLGIAFAGVYDKLSDALLYQALLLDTFGGKVDPNGFQFLVNLGVRLGNKRNQFGFGIKVPTYYFNHYYSMNNISNNSGDVLKVLRFLEYGINSLLYQVDFRRNYSVYFNYTYSF
>NZ_CP032476.1|WP_139532305.1|272630_274607_+|excinuclease-ABC-subunit-B
MPLFDLKSPYPPAGDQPQAIEALAKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRTYKSFLLKLVEMGYSRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSVMLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKKNVAEQIIRPTGLLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMHSEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAKLRTL
>NZ_CP032476.1|WP_139532306.1|271877_272561_+|hypothetical-protein
MNYPNLPNSALEISEQPEVKEITNELLKQLQNALHSNALFTDQIQLSLKGIVRILEVLLSLDFFKNANEIDSSLRNSIEWLTNAGESLKNKMKEYERFFSEFNTSMHANEQEVTSILNANTENIKSEIKKLENQIIEATTRLLTSYQIFLNNARDSANNQITENKTASLEAIKEAKITANNEISEKQTQAINNINEAKDNANNQITANKTQAITNINEAKNQSLSKH
>NZ_CP032476.1|WP_139532297.1|283855_284902_-|alcohol-dehydrogenase-catalytic-domain-containing-protein
MRVPSKGFAIFSKDGHFKPHDFSRHAVGPKDVLIDILYAGICHSDIHSAYSEWKEGIYPMVPGHEIAGVIKEVGKEVKKFKVGDVVGVGCFVNSCKTCKPCKEHQEQFCAKVVFTYDCLDYFHDNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYDLKDYLKLLTYNGDLALVGLPPVEVAPALSVFDFIHLSNRKVYGSLIGGIKETQEMMDFSIKHNIYPEVDLILGKDIDTAYHNLTHGKAKFRYVIDMKKSFD
>NZ_CP032476.1|WP_139532296.1|285071_286082_-|glucokinase
MPKTETYPRLLADIGGTNARFGLEVAPRQIECVEVLRCEDFESLSDAVRFYLSKRKESLKLHPIYGSFAVATPIMGDFVQMTNNHWTFSIETTRQCLNLKKLLVINDFVAQAYAISAMQENDLAQIGGIKCEINAPKAILGPGTGLGVSTLIQNSDGSLKVLPGEGGHVSFAPFDDLEILVWQYARSKFNHVSAERFLSGSGLVLIYEALSKRKGLEKVAKLSKAELTPQIISERALNGDYPICRLTLDTFCSMLGTLAADVALTLGARGGVYLCGGIIPRFIDYFKTSPFRARFETKGRMGAFLASIPVHVVLKKTPGLDGAGIALENYLLHDKI
>NZ_CP032476.1|WP_139532295.1|286068_286752_-|6-phosphogluconolactonase
MGYQLFEFENLKDCHKALIERFKEFFNTALKKHHQVSIAFSGGRSPISLLQKLSVLDLNWHECLVSLVDERIIDTSHKDSNTKLLHDYLLQNNALKASFIPLLPKKISSDTNTLFHFANQHFKQPHLAILGMGTDGHTASLFPETSAFLNEEKENIVLTKPINAPYERLSMSVNALENCEKLFLSISGVEKRGVLEKALKETAPYSLPIARILHSKKVTTEVFYAKN
>NZ_CP032476.1|WP_139532294.1|286762_288040_-|glucose-6-phosphate-dehydrogenase
MLDFDLVLFGATGDLAMRKLFVSLYEIYTHYGFKKDSKIIASGRKELSNEEFLALLCEKTQLHSREKGREFLAHISYFCVRLDNPKDFEELSKIATKNKPLIFYFSISPSFFATTAQHLAKNALNHANTRLILEKPLGHDLKTCKEIFQSISAFFKEEQIFRIDHYLGKKGVQNILELRLNNPILNILWDQISAVEICVYETLGVEERGEFYDKIGALRDMVQNHLLQVLSLIATDLPNDLKDLRKEKIKVLKTLQPPKDFKKQVIRAQYQGYRDENKVHKESQTETFVAIKAFLDTPKFKGVPFYLKHAKKMPRNQASVKIHFNAINTLEFFLSQDKITLTLQDHQNPLVLETHNKQEFLQPYAKLLYDAIQNNHNNFAHQLELEASWVFIDTLIEGFMNNATPLYSYESHNLNESEFLKPLYQ
>NZ_CP032476.1|WP_139532293.1|288105_289932_+|phosphogluconate-dehydratase
MPKHSLEQIKEKITERSKKTRELYLENIFNPKNQPKIESLGCANIAHVTASMPEHLKMPLGSHKRKHFAIITAYNDMLSAHQPFKNYPDWIKKELQEHNAYASVASGVPAMCDGITQGYEGMELSLFSRDVIALSTAVGLSHNVFDGAFFLGVCDKIVPGLLIGALSFGNLASVFVPSGPMVSGIENYKKAKARQDFAMGKINREELLKVEMQSYHDVGTCTFYGTANSNQMMMEFMGLHVANSSFINPNNPLRKVLVEESAKRLASGKVLPLAKLIDEKSILNALIGLMATGGSTNHTLHLIAIARSCGVILNWDDFDAVSNLIPLLAKVYPNGSADVNAFEACGGLAFVIKELLKEGLLFEDAHTIMDTETQKGMQNYTKTPFLENDQLVYKDAVNHSLNTDILRPVSEPFAANGGLKILKGNLGRAVIKISAIKDEHRKVKARAIVFKTQSEFLERFKNKELERDFVAVLPFQGPKSNGMPELHKLTTNLGALQDMGYKVALVTDGRMSGASGKVPSAIHLSPEGALNGAIIKIKDGDWIELDAPNNALNVLEKDFEKRGINPLFLETLENLEKPSFGLGRELFTSLRLNVNTAEEGGMSFGIKV
>NZ_CP032476.1|WP_139532292.1|289950_290577_+|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase
MQDKIIEVLQISPIVPVVVVENVKDAVPLAQSLIEGGIPIIEVTLRSSCALEAIELIAKNVPKMRVGAGTILNLTQLEQAQNRGAEFLISPGLTPSLLEHAKKKDMPLIPGVSSSSEVMQALEWGYHALKFFPAEYCGGVKLLNAFNGPFKGVKFCPTGGISADNMRSYLNLENVLCVGGSWLTPKDLIQNKEWDKITEICKRALALR
>NZ_CP032476.1|WP_139532291.1|290646_291519_+|Sel1-like-repeat-protein-HcpC
MLENVKKSFFRVLCLGTLCLGGLMAEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGHGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGVAKNFKEALARYSKACEMQNGGGCFNLGAMQYNGEGVTRDEKQAIENFKKGCKLGAKGACDILKQLKIKV
>NZ_CP032476.1|WP_001879009.1|291717_292146_-|IS200/IS605-family-transposase
MRKNHYPLRGYISTNRSKHNLKAHLILVCKYRKKLLQGDLNNFIKSVIDEIATQSNLIIIAMESDIDHLHLMVQYIPRMSISSIIAKIKQITTYRVWRDKRFIPLLQKHFWKEKTFWTDGFFACSIGEANPETIKAYIENQG
>NZ_CP032476.1|WP_139531985.1|292215_293499_+|IS200/IS605-family-element-transposase-accessory-protein-TnpB
MLNAIKFRIYPNAQQKELISKHFGCSRVVYNYFLDYRQKQYAKGIKETYFTMQKVLTQIKRQEKYHYLNECNSQSLQMALRQLVSAYDNFFSKRARYPKFKSKKNAKQSFAIPQNIEIKTETQTIALPKFKEGIKAKLHRDLPKDSVIKQAFISCIADQYFCSLSYETKEPIPKHTIIKKAVGLDMGLRTLIVTSDKIEYPHIRFYQKLEKKLTKAQRRLSKKVKGSNNRKKQAKKVSRLHLACSNTRDDYLHKISNEITNQYDLIGVETLNIKALMKTYHSKSLANASWGKFLAMLEYKAQRKGKTLLRIDRFFPSSQLCSYCGVNTGKKHESITKFTCPHCKTTHHRDYNASVNIRNYALGMLDDRHKVKTDKARVGIIRSDYTHHTNECVKACGASSNGVSSKYGNILDLASYGAMKQEKAQSL
>NZ_CP032476.1|WP_139532290.1|293688_293877_-|hypothetical-protein
MPLRVSGVGYTIRATKDSDNQDYFYLSKRDDSFLKLEQEIVGLPIIVNQKGAGCCQLGLSMR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage