CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP032478	Helicobacter pylori strain 25-A-EK9 chromosome, complete genome	3 crisprs	DEDDh	0	3	0	0

Cas Category Instructions

Results visualization

1. NZ_CP032478

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP032478_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP032478_1

208311-208404

Orphan

Consensus_repeat	Method
TTTTTTTGGGGGTTTGATCTTTTTCTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP032478_1

>merge|NZ_CP032478|1|208311-208404|CRISPRCasFinder
TTTTTTTGGGGGTTTGATCTTTTTCTTTTTGCCAATCCCCACTACTTTCGCTTTTTAATCTTTAGTTTTTTTGGGGGTTTGATCTTTTTCTTTT

>NZ_CP032478|1|1|208311-208404|CRISPRCasFinder
TTTTTTTGGGGGTTTGATCTTTTTCTTTT	TGCCAATCCCCACTACTTTCGCTTTTTAATCTTTAG
TTTTTTTGGGGGTTTGATCTTTTTCTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP032478.1\|WP_139519176.1\|205993_208114_+\|Hop-family-adhesin-BabB	unknown	unknown	gnl\|CDD\|375731
NZ_CP032478.1\|WP_139519175.1\|205568_205775_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032478.1\|WP_097701390.1\|218915_219377_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032478.1\|WP_139519172.1\|201135_203070_+\|RNB-domain-containing-ribonuclease	unknown	unknown	gnl\|CDD\|223631
NZ_CP032478.1\|WP_139519169.1\|198694_199741_+\|microcin-C-ABC-transporter-permease-YejB	unknown	unknown	gnl\|CDD\|226642
NZ_CP032478.1\|WP_139519170.1\|199749_200337_+\|SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|214600
NZ_CP032478.1\|WP_139519171.1\|200344_201136_+\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|161904
NZ_CP032478.1\|WP_139519182.1\|217626_218523_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|307170
NZ_CP032478.1\|WP_100965995.1\|212495_212972_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032478.1\|WP_139519174.1\|204234_204663_+\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|179034
NZ_CP032478.1\|WP_000468322.1\|208918_209149_-\|YdcH-family-protein	unknown	unknown	gnl\|CDD\|225397
NZ_CP032478.1\|WP_139519177.1\|209268_211812_+\|alanine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234701
NZ_CP032478.1\|WP_060474975.1\|204672_205218_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|236275
NZ_CP032478.1\|WP_000440196.1\|205240_205498_+\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NZ_CP032478.1\|WP_139519178.1\|211813_212386_+\|septum-formation-inhibitor-Maf	unknown	unknown	gnl\|CDD\|179732
NZ_CP032478.1\|WP_139519181.1\|216375_217623_-\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|379080
NZ_CP032478.1\|WP_139519179.1\|213448_214453_-\|formamidase	unknown	unknown	gnl\|CDD\|183950
NZ_CP032478.1\|WP_139519180.1\|214618_215746_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|223579
NZ_CP032478.1\|WP_001237418.1\|215745_216297_-\|DUF507-family-protein	unknown	unknown	gnl\|CDD\|225502
NZ_CP032478.1\|WP_139519173.1\|203059_204082_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236276

Protein	Function_ID	Function_description	E-value
NZ_CP032478.1\|WP_139519176.1\|205993_208114_+\|Hop-family-adhesin-BabB	gnl\|CDD\|375731	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain. This is the N-terminal extracellular adhesion domain of Sialic acid binding adhesin (SabA) present in Helicobacter pylori. The N-terminal domain of SabA functions as a sugar-binding adhesion domain with conserved disulfide bonds. Notably, these amino acid residues are not only conserved among SabA orthologs but also between SabA and BabA.	1.1274e-93
NZ_CP032478.1\|WP_139519172.1\|201135_203070_+\|RNB-domain-containing-ribonuclease	gnl\|CDD\|223631	COG0557, VacB, Exoribonuclease R [Transcription].	6.61277e-138
NZ_CP032478.1\|WP_139519179.1\|213448_214453_-\|formamidase	gnl\|CDD\|183950	PRK13287, amiF, formamidase; Provisional.	0
NZ_CP032478.1\|WP_139519169.1\|198694_199741_+\|microcin-C-ABC-transporter-permease-YejB	gnl\|CDD\|226642	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only].	0
NZ_CP032478.1\|WP_139519170.1\|199749_200337_+\|SH3-domain-containing-protein	gnl\|CDD\|214600	smart00287, SH3b, Bacterial SH3 domain homologues.	1.4155e-12
NZ_CP032478.1\|WP_139519171.1\|200344_201136_+\|shikimate-dehydrogenase	gnl\|CDD\|161904	TIGR00507, Shikimate_dehydrogenase, shikimate dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. [Amino acid biosynthesis, Aromatic amino acid family].	1.47412e-108
NZ_CP032478.1\|WP_139519182.1\|217626_218523_-\|EamA-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	1.32792e-13
NZ_CP032478.1\|WP_001237418.1\|215745_216297_-\|DUF507-family-protein	gnl\|CDD\|225502	COG2952, COG2952, Uncharacterized protein conserved in bacteria [Function unknown].	5.26568e-81
NZ_CP032478.1\|WP_139519174.1\|204234_204663_+\|30S-ribosomal-protein-S6	gnl\|CDD\|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	6.02463e-40
NZ_CP032478.1\|WP_000468322.1\|208918_209149_-\|YdcH-family-protein	gnl\|CDD\|225397	COG2841, COG2841, Uncharacterized protein conserved in bacteria [Function unknown].	4.94958e-24
NZ_CP032478.1\|WP_139519177.1\|209268_211812_+\|alanine--tRNA-ligase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
NZ_CP032478.1\|WP_060474975.1\|204672_205218_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|236275	PRK08486, PRK08486, single-stranded DNA-binding protein; Provisional.	1.3954e-107
NZ_CP032478.1\|WP_000440196.1\|205240_205498_+\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	2.41298e-32
NZ_CP032478.1\|WP_139519178.1\|211813_212386_+\|septum-formation-inhibitor-Maf	gnl\|CDD\|179732	PRK04056, PRK04056, septum formation inhibitor Maf.	6.46797e-96
NZ_CP032478.1\|WP_139519181.1\|216375_217623_-\|glycosyltransferase-family-39-protein	gnl\|CDD\|379080	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase. This family contains members that are not captured by pfam02366.	2.39261e-05
NZ_CP032478.1\|WP_139519180.1\|214618_215746_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|223579	COG0505, CarA, Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism].	0
NZ_CP032478.1\|WP_139519173.1\|203059_204082_+\|hypothetical-protein	gnl\|CDD\|236276	PRK08487, PRK08487, DNA polymerase III subunit delta; Validated.	1.46531e-129

>NZ_CP032478.1|WP_139519176.1|205993_208114_+|Hop-family-adhesin-BabB
MKKTLLLSLSLSFLLHAEDDGFYTSVGYQIGEAAQMVTNTKGIQQLSDNYEKLNNLLNNYSTLNTLIKLSADPSTINDARDNLGSSSRNLLDVKTNSPAYQAVLLALNAAVGLWQVTSYAFTACGPGSNESANGGIQTFNNVPGQNTTTITCNSYYQPGHGGPISTENYAIINKAYQIIQKALTANRSNGDGVPVLSNTTTKLDFTINGYKRTGGEPNTPERFPWSDGKYIRTQWINTTSQSTETKINTTNNAQELLKQASIIITTLNEACPNFQNGGSGYWQGISGNGTMCGMFKNEISAIQGMIANAQEAVAQAKIVSENAQNQNNLDTGKPFNPYTDASFAQSMLANAQAQAEILNQAEQVVKNFEKIPKNFVSDSLGVCYEVQGGERRGTNPGQVTSNTWGAGCAYVQETITNLTNSIAHFGTQAQQIQQAENIADTLVNFKSKYNELGNTYNSITTALSKIPNGSSLQNVVSQKNNPYSPQGIETNYYLNQNSYNQIQTINQELGRNPFRKVGIVSSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSVGLFGGIALAGTSWLNSEYVNLATMNNVYNAKMNVANFQFLFNMGVRMNLARPKKKDSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY
>NZ_CP032478.1|WP_139519175.1|205568_205775_+|hypothetical-protein
MLAVKTIKIPLKTTQAEIPNISSVWALHDKMKKFDFSGGFLSVISGNVILKYPLKSLAAKSKTIPPSN
>NZ_CP032478.1|WP_000440196.1|205240_205498_+|30S-ribosomal-protein-S18
MERKRYSKRYCKYTEAKISFIDYKDLDMLKHTLSERYKIMPRRLTGNSKKWQERVEVAIKRARHMALIPYIVDRKKVVDSPFKQH
>NZ_CP032478.1|WP_060474975.1|204672_205218_+|single-stranded-DNA-binding-protein
MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDKKSDNPQANAMQDSMTHEGFNNAYPANHNAPSQDPFNQAQSYAQNAYAKENLQAQPSKYQNSVPEINIDEEEIPF
>NZ_CP032478.1|WP_139519174.1|204234_204663_+|30S-ribosomal-protein-S6
MRHYETMFILKPTLVEEEIKSKIEFYREVITKHHGVIETSLDMGMRNLAYEIKKHKRGYYYVAYFKAEPSMIVELERLYRINEDMLRFIVIKYESKKEIEAWHALVDRANKKPSHAKEKHEKTEHAHSHHAEEAKSTESHSE
>NZ_CP032478.1|WP_139519173.1|203059_204082_+|hypothetical-protein
MYRKDLDHYLKQRLPKAVFLYGEFDFFIHYYIQTISSLFKCNNPDTETSLFYASDYEKSQIATLLEQDSLFGGSSLVILKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNAKSDTTKYKYSSDAIVKFFQKSPLKDEAICARFFTPKTWESLKFLQERANFLHLDISGHLLNALFETNNEDLGISFNDLDKLAVLNAPITLEDIQELSSNAGDMDLQKLILGLFLKKSVLDIYDYLLKEGKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPPKEIAENYAKNALRLKEAGYKRVFEIFRLWHIQSMQGQKELGFLYLTPIQKIINP
>NZ_CP032478.1|WP_139519172.1|201135_203070_+|RNB-domain-containing-ribonuclease
MQGFLRSLFFGVKKIPKRFAPLVEKGVLKEALQSNKDRYFLKEGFDIGKVERAEKKAFFISLAKNYPKDPLIKNLPPSFKTDALILCQIECSKKRPIAFFKAALFDAQDTMIAYLAKENNQIVAIPFKEPFKKPISLKHSQRSLLELPRHCVVKIDLKKREISEILGALEDPLIDENLSLSLFDRVKDFSKDCLNLAQYYAQLKASDFKDRINYSHIPFITIDPKDAKDFDDAIFYDQEKRVLFVAVADVSEFVPKHSSLDKEARVRGFSVYFPNSVYPMLPLSLSQGACSLKAFEKRLALVYEIPLDNLKNARLSQGVIEVRANCTYEEINHFLSANQSSLDKDLQQSLLGFLEMALKLKKERLKKGFNFNSFENKLYLNKEGRIEKIETQQESSAHTLIEEAMLLANQSSARLLDEHFHNRGIYRTHKEPSLEQQKRLYAKLFDYEIVHPKNMGFFPFLEHALKTAKEKSIEREVSRLIIKSQNLALYSPMQESHFGLGFISYTHFTSPIRRYSDLALHRLLKELLFHQAKGCSYLLEETPKLCAELNALQKKAALIERDFIKRKFARLALEFLEKEFLGVVLEVKDWVVVGLKEWVGLKVLIKTNKVFKPLEKVRVTITHADLILGQVRGEITERIKEHVS
>NZ_CP032478.1|WP_139519171.1|200344_201136_+|shikimate-dehydrogenase
MKLKSFGVFGNPIKHSKSPLIHNACFLTFQKELGFLGHYHPILLPLESHIKNEFLHLGLSGANVTLPFKERAFQICDKIKGIALECASINTLVLENDELVGYNTDALGFWLSLGNESYQSTLILGSGGSAKALACGLKKQGLKVSVLNRSARGLDFFQRLGCDCFIEPPKSAFDLIINATSASLNNELPLNKEVLKGYFKEGKLAYDLAYGFLTPFLSLAKELKTPFQDGKDMLIYQAALSFEKFSASQIPYSKAFEVMRSVF
>NZ_CP032478.1|WP_139519170.1|199749_200337_+|SH3-domain-containing-protein
MKTEMKSSLKLFMQPLLVVLAFMLLYALAHAALGFYAKKDSAPISPNAEKTEIERQNSALSPKEEANTTTTATEESPTKDTAPPLETTAQEKETKQENKQEQEKENEPKQDSVSPVQNDQKAPTTPLMGKKPLEYKVAVSGVNVRAFPSTKGKILGLLLKNKSVKVLEIQNDWAEIEFSNKTKGYVFLKLLKKAE
>NZ_CP032478.1|WP_139519169.1|198694_199741_+|microcin-C-ABC-transporter-permease-YejB
MIAYILKRLLLIIPTLLAIMTINFFLIQSAPGGPIEQMMAKINNTQSKEIQGVVKERSYRASQGLESDLLENLKKLYGFDKPIGERYLLMLKKYLQFDFGESFYRQIKVIDLIKEKLPVSISLGLFSTLLIYLVSIPLGIFKAKRNNEPLDVLSSVVIIVANAIPAFLFAVVLIVFFAGGNYWHWFPLKGLVSDNFESLSALGKIKDYLWHITLPVLCISLGGFASLTLLVKNSFLDEMGKLYVLSAKAKGCSVGRIFYAHVFRNAILLVVAGFPQAFLGMFFSSSLLIEIVFSLDGLGLLGYESIVSRDYPVVFGSLYIFTLLGLVASLISDLLCVVIDPRIDFEKR
>NZ_CP032478.1|WP_000468322.1|208918_209149_-|YdcH-family-protein
MFHEFRDEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEISHMKKQKLKLKDEIHGMIIEYREKQKSERA
>NZ_CP032478.1|WP_139519177.1|209268_211812_+|alanine--tRNA-ligase
MDIRNEFLQFFQNKGHEIYPSMPLVPNDATLLFTNAGMVQFKDIFTGMVPRPSIPRAASSQLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDLYISVHEKDDEAVKLWEKFVPVDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNNFDSSLFKPLMAEISELTGLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLESGMELFNLSLTHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGACVDMQGFELCMQEQVKRSKASWKGKQNNADFSAILNAYAPNEFVGYETTECPAKVLGFFDSGFKEITEANPNQEVWVLLEKTPFYAEGGGAIGDKGALFKDNEEAALVLDTKNFFGLNFSLLEIKKALKKGDQVIAQVSDERLEIAKHHSATHLLQSALREVLGSHVSQAGSLVESKRLRFDFSHPKALNDEELEKVEYLVNTQIFKHLKSQVEHMPLNQAKDKGALALFSEKYAENVRVVSFKEASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRIEAVCGKAFYQLAKEENKELKNAKTLLKNNDVIAGINKLKESVKNSQKAPVSMDLPIEKIHGVSLVVGVVEQGDIKEMIDRLKSKHERLLAMVFKKENERIALACGVKNAPIKANVWANEVAQILGGKGGGRDDFASAGGKDIENLQAALNLAKNTALKVLEG
>NZ_CP032478.1|WP_139519178.1|211813_212386_+|septum-formation-inhibitor-Maf
MELILGSQSSARANLLKEHGIKFEQKALYFDEESLKTTDPREFVYLACKGKLEKAKELLANNCAIVVADSVVSVGNRMQRKAQNKREALEFLKRQNGNEIEVLTCSAFISPVLEWLDLSVFRARLKAFDPSEIEKYLESGLWQESAGCVRLEDFHRPYIKSSSENLSVGLGLNVEGLLGALKLGAKLSSL
>NZ_CP032478.1|WP_100965995.1|212495_212972_+|hypothetical-protein
MAHFIFSVVVVLLWLVAWGIYLVFGKNLKREMEEIENSDSNQNNPFITAAMGIGGAAISIFFPDTKPIVDGVKPLAEKGLQEAFRKDKLTEGQKISISGLRFLSLFCIVVAAMIGVCLIWSFNGWSFWKVTGYFLLYVFFCSASIFPNIPINGILDDR
>NZ_CP032478.1|WP_139519179.1|213448_214453_-|formamidase
MGSIGSMGKPIEGFLVAAIQFPVPIVNSRKDIDHNIESIIKTLHATKAGYPGVELIIFPEYSTQGLNTAKWLSEEFLLDVPGKETELYAKACKEAEVYGVFSIMERNPDSNKNPYNTAIIINPQGEIILKYRKLFPWNPIEPWYPGDLGMPVCEGPGGSKLAVCICHDGMIPELAREAAYKGCNVYIRISGYSTQVNDQWILTNRSNAWHNLMYTVSVNLAGYDNVFYYFGEGQICNFDGTTLVQGHRNPWEIVTGEIYPKMADNARLSWGLENNIYNLGHRGYVAKPGGEHDAGLTYIKDLAAGKYKLPWEDHMKIKDGSIYGYPTTGGRFGK
>NZ_CP032478.1|WP_139519180.1|214618_215746_-|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MVSLYLENGLFLKAQSFGASGTQAGELVFNTSMSGYQEVISDPSYKGQFVVFSMPEIGVVGANSKDDESFFSCAGVLVRHYNEFFSNSRADFSLSAYLKERGVLGICGVDTRSLIKTLRHHGCLMMVASTIEHDKNKLEKILKNAPRISHSPLVSSVSTPKIITHQRTTFDFKTLDYKLFDEKNSHKIIAVLDFGAKGNILNELQNVGLKALIYPHHTKASELIKAYEKKEISGIFLSNGPGDPLSLQQEIGEIKQLINAKIPMFGICLGHQLLSIAQGYPTYKLKFGHHGSNHPVKNLKTNAVEITAQNHNYCVPEEIEEIATITHRNLFDNTIEGVRYKNAPIISVQHHPESSPGPKESHYIFKEFVELLKDF
>NZ_CP032478.1|WP_001237418.1|215745_216297_-|DUF507-family-protein
MRLKLTHINHISHKIANDFIHSKLLELKAPRELLCELIEGILEKSVKKENAIDEQARELLEENTDEIEFMRMDERQLFWMIKRQIAQKEGFHLFWEERCNDLSHQILNKILDEDLIMFSVSENLIRNLIYKSIDTYSKAYESIENEVHEKIKHYKRKLPVGSDEYELVFERLYEEELRRKGFL
>NZ_CP032478.1|WP_139519181.1|216375_217623_-|glycosyltransferase-family-39-protein
MQLSPLQSALLYFSYFIYPEKKTRSFDLSDLVFIIMVFLVLALGLLMSKEISISYNEAKDFFYSSAWFVQIAQKSTAILGQNDLALRLPFLIAHLINMFLFYFIGRKILKKPKDALYVVLTYALLPGVNLFAILLAKSVLVLSLGLLVSYLYVKTQKIPYLTLSACAFLDGAFIPLLLGVFAYALRRRYFKSAIFILVVLGVNTALFSGSFNKGLPSGYFIDTCLELMLLYSPLLFLYYPYTLYKALLDKKPSLLAFMSASGWLFPLLLSMRQEIDLRTFAPLALIGLPLFVKSVLNSLRVRLKEFRGQYYLHVFSLYLLMLTETLFLWGSKISGANEKLLNRHFLAKEVAIALQLRGIHQIRTNDKQLALRLQFYGIKEGGRLRLINTKISKKRPDITIIYADKILQSYSLVRH
>NZ_CP032478.1|WP_139519182.1|217626_218523_-|EamA-family-transporter
MRNTILFGVSMILLANFCFGIMSAFVKITADYFSPMENVFYRSITMTLLLLLIYPFKPYRLKSYKQGGFKKLAFRVVVGGLAMLAFFYNIEKISLATATAFSQCAPIYTVLLSPLLLKEKLKRSALISACIGIVGVVLISDPSVENVGPVEIFMGILSGIFVSLAYITLRDLREYYDKQAVILAFAFGMSLLGLAGMFIDIPFLSTGIHIPRKEDILWISLIGISGTLGQYFLTYAYMNAPAGIIAPIEYTRIVWGLLFGLYLGDKFLDLKSSLGVALILCSGLLIALPALLKELKKI
>NZ_CP032478.1|WP_097701390.1|218915_219377_+|hypothetical-protein
MAVSSINQFDSNLYGLLNAKSAPKEDLAPIESAEKVEREKKDAPTENLPFNPDKRETYGFLVLELMSDREYEAFLRATAGMDESQKRLAAQSLYSLTDFYNGKFSKEVENAPKQPINGLHKKALQTFNATNHNAFLQRYQNAYNNPSTMDVIL

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Crispr_ID: NZ_CP032478_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP032478_2

270267-270373

Orphan

Consensus_repeat	Method
AACAAAAGACAGAACAAGAAAAACAAAAGACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP032478_2

>merge|NZ_CP032478|2|270267-270373|CRISPRCasFinder
AACAAAAGACAGAACAAGAAAAACAAAAGACAGAACAAGAAAAACAAAAGACAAGCAATATAGAGACTAACAATCAAATAAAAGTAGAACAAGAACAACAAAAGACA

>NZ_CP032478|2|2|270267-270373|CRISPRCasFinder
AACAAAAGACAGAACAAGAAAAACAAAAGACA	GAACAAGAAAAACAAAAGACAAGCAATATAGAGACTAACAATC
AAATAAAAGTAGAACAAGAACAACAAAAGACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP032478.1\|WP_139519205.1\|276923_278255_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341025
NZ_CP032478.1\|WP_139519204.1\|273578_274958_+\|HP1184-family-multidrug-efflux-MATE-transporter	unknown	unknown	gnl\|CDD\|240548
NZ_CP032478.1\|WP_000744185.1\|265572_265797_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032478.1\|WP_139519202.1\|268412_269453_+\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|273543
NZ_CP032478.1\|WP_050840148.1\|261764_263843_+\|elongation-factor-G	unknown	unknown	gnl\|CDD\|234569
NZ_CP032478.1\|WP_139519198.1\|252101_260774_+\|DNA-directed-RNA-polymerase-subunit-beta/beta'	unknown	unknown	gnl\|CDD\|181983
NZ_CP032478.1\|WP_000312860.1\|276143_276905_-\|tRNA-2-thiocytidine(32)-synthetase-TtcA	unknown	unknown	gnl\|CDD\|236737
NZ_CP032478.1\|WP_014536785.1\|271220_271964_-\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|225875
NZ_CP032478.1\|WP_139519208.1\|282262_284164_+\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|375731
NZ_CP032478.1\|WP_115043752.1\|278582_279839_+\|NupC/NupG-family-nucleoside-CNT-transporter	unknown	unknown	gnl\|CDD\|224883
NZ_CP032478.1\|WP_001171718.1\|250963_251458_+\|50S-ribosomal-protein-L10	unknown	unknown	gnl\|CDD\|234632
NZ_CP032478.1\|WP_128077801.1\|272235_273411_+\|sugar-transporter	unknown	unknown	gnl\|CDD\|179591
NZ_CP032478.1\|WP_001142321.1\|260862_261270_+\|30S-ribosomal-protein-S12	unknown	unknown	gnl\|CDD\|235355
NZ_CP032478.1\|WP_001922115.1\|251502_251880_+\|50S-ribosomal-protein-L7/L12	unknown	unknown	gnl\|CDD\|234671
NZ_CP032478.1\|WP_000542870.1\|274983_276135_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|223551
NZ_CP032478.1\|WP_139519206.1\|279850_281092_+\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
NZ_CP032478.1\|WP_139519200.1\|265986_267036_-\|lipopolysaccharide-heptosyltransferase-II	unknown	unknown	gnl\|CDD\|223928
NZ_CP032478.1\|WP_139519207.1\|281088_281790_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|188024
NZ_CP032478.1\|WP_139519201.1\|267097_268426_+\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|223202
NZ_CP032478.1\|WP_001254352.1\|261285_261753_+\|30S-ribosomal-protein-S7	unknown	unknown	gnl\|CDD\|235398

Protein	Function_ID	Function_description	E-value
NZ_CP032478.1\|WP_139519205.1\|276923_278255_-\|MFS-transporter	gnl\|CDD\|341025	cd17472, MFS_YajR_like, Escherichia coli inner membrane transport protein YajR and similar multidrug-efflux transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli inner membrane transport protein YajR and some uncharacterized multidrug-efflux transporters. YajR is a putative proton-driven major facilitator superfamily (MFS) transporter found in many gram-negative bacteria. Unlike most MFS transporters, YajR contains a C-terminal, cytosolic YAM domain, which may play an essential role for the proper functioning of the transporter. YajR-like transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.43899e-122
NZ_CP032478.1\|WP_139519204.1\|273578_274958_+\|HP1184-family-multidrug-efflux-MATE-transporter	gnl\|CDD\|240548	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump.	1.01943e-101
NZ_CP032478.1\|WP_139519202.1\|268412_269453_+\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|273543	TIGR01296, Aspartate-semialdehyde_dehydrogenase, aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. [Amino acid biosynthesis, Aspartate family].	0
NZ_CP032478.1\|WP_139519200.1\|265986_267036_-\|lipopolysaccharide-heptosyltransferase-II	gnl\|CDD\|223928	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].	2.41617e-87
NZ_CP032478.1\|WP_001254352.1\|261285_261753_+\|30S-ribosomal-protein-S7	gnl\|CDD\|235398	PRK05302, PRK05302, 30S ribosomal protein S7; Validated.	3.39959e-100
NZ_CP032478.1\|WP_000312860.1\|276143_276905_-\|tRNA-2-thiocytidine(32)-synthetase-TtcA	gnl\|CDD\|236737	PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional.	8.58341e-69
NZ_CP032478.1\|WP_014536785.1\|271220_271964_-\|carbonic-anhydrase	gnl\|CDD\|225875	COG3338, Cah, Carbonic anhydrase [Inorganic ion transport and metabolism].	1.33882e-125
NZ_CP032478.1\|WP_139519198.1\|252101_260774_+\|DNA-directed-RNA-polymerase-subunit-beta/beta'	gnl\|CDD\|181983	PRK09603, PRK09603, DNA-directed RNA polymerase subunit beta/beta'.	0
NZ_CP032478.1\|WP_115043752.1\|278582_279839_+\|NupC/NupG-family-nucleoside-CNT-transporter	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	8.56584e-173
NZ_CP032478.1\|WP_001171718.1\|250963_251458_+\|50S-ribosomal-protein-L10	gnl\|CDD\|234632	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed.	1.40218e-51
NZ_CP032478.1\|WP_128077801.1\|272235_273411_+\|sugar-transporter	gnl\|CDD\|179591	PRK03545, PRK03545, putative arabinose transporter; Provisional.	0
NZ_CP032478.1\|WP_001142321.1\|260862_261270_+\|30S-ribosomal-protein-S12	gnl\|CDD\|235355	PRK05163, rpsL, 30S ribosomal protein S12; Validated.	1.80166e-84
NZ_CP032478.1\|WP_001922115.1\|251502_251880_+\|50S-ribosomal-protein-L7/L12	gnl\|CDD\|234671	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed.	2.546e-46
NZ_CP032478.1\|WP_139519206.1\|279850_281092_+\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
NZ_CP032478.1\|WP_050840148.1\|261764_263843_+\|elongation-factor-G	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	0
NZ_CP032478.1\|WP_139519208.1\|282262_284164_+\|outer-membrane-beta-barrel-protein	gnl\|CDD\|375731	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain. This is the N-terminal extracellular adhesion domain of Sialic acid binding adhesin (SabA) present in Helicobacter pylori. The N-terminal domain of SabA functions as a sugar-binding adhesion domain with conserved disulfide bonds. Notably, these amino acid residues are not only conserved among SabA orthologs but also between SabA and BabA.	1.71192e-70
NZ_CP032478.1\|WP_139519207.1\|281088_281790_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|188024	TIGR00107, Purine_nucleoside_phosphorylase_DeoD-type, purine-nucleoside phosphorylase, family 1 (deoD). Purine nucleoside phosphorylase (also called inosine phosphorylase) is a purine salvage enzyme. Purine nucleosides, such as guanosine, inosine, or xanthosine, plus orthophosphate, can be converted to their respective purine bases (guanine, hypoxanthine, or xanthine) plus ribose-1-phosphate. This family of purine nucleoside phosphorylase is restricted to the bacteria. [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides].	1.01608e-142
NZ_CP032478.1\|WP_139519201.1\|267097_268426_+\|histidine--tRNA-ligase	gnl\|CDD\|223202	COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].	2.69136e-164
NZ_CP032478.1\|WP_000542870.1\|274983_276135_+\|cation:proton-antiporter	gnl\|CDD\|223551	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	1.27918e-36

>NZ_CP032478.1|WP_139519202.1|268412_269453_+|aspartate-semialdehyde-dehydrogenase
MKTYNVAIVGASGAVGQELIKGLENSFFPIKKFVPLASARSAGKKIKAFNKDYEILETTHEVFEKEKIDIAFFSAGGSVSEEFATSASKTALVVDNTSFFRLNKDVPLVVPEINAKEIFNAPLNIIANPNCSTIQMTQILNPLHLYFKIKSVIVSTYQAVSGAGNKGIESLKNELKTALECLEKDPAIDLSQVLQAGAFPYAIAFNAIAHIDTFKENGYTKEELKMVHETHKIMGVDFPISATCVRVPVLRSHSESLSIAFEKEFDLKEVYEVLKNAPSVVVCDDPSHNLYPTPLKASHTDSVFIGRLRKDLFDKKTLHGFCVADQLRVGAATNALKIALHYIKNA
>NZ_CP032478.1|WP_139519201.1|267097_268426_+|histidine--tRNA-ligase
MITPKVLSGFKDRLPKDAIQKAQLLSKVSVVFQSFGFVPIETPHLEYAEVLLPDASSDIQKEIYRFKDHGDRDVALRFDLTVPLARFVSLHHQILGMPFKRYAIGNVFRGERAQKGRYREFTQCDFDFIGSESLVCDAEIIQVIIASLKALDLEDFCVSINHRKILNGICEYFGISQVNAVLRIVDKLEKIGLNGVEEELKKECNLNSNTIKELLEMVQIKQNDLSHAEFFEKIAYLKDYNENLKKGIQDLERLYQLLGDLQISQNLYKIDFSIARGLGYYTGIVYETTLNEMKSLGSVCSGGRYDHLTKNFSKENLQGVGASIGIDRLIVALSEMQLLDERSTQAKVLIACMHEEYFSYANRLAESLRQSGIFSEVYPEAQKIKKPFSYANHKGHEFVAVIGEEEFKSETLSLKNMHSGMQLNCLSFLKALEIIGENDEDL
>NZ_CP032478.1|WP_139519200.1|265986_267036_-|lipopolysaccharide-heptosyltransferase-II
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDNTKKSLFRLLATHKLAQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLKKELDKKSVLPLKLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDAVVSEEILKLIKGLLKNPLLSHNAYNLCGKTSIEELIQRIAVLDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCPLKNEKNHLCMRSITPLEVLQAAHTLLEKP
>NZ_CP032478.1|WP_000744185.1|265572_265797_+|hypothetical-protein
MKKQILTGVLLSVLAVSSAYAHKDKKDAKKPKFSTELVVAQNDKKDAKKPKFSTELVVAQNDKKDAKKPKNSVA
>NZ_CP032478.1|WP_050840148.1|261764_263843_+|elongation-factor-G
MARKTPLNRIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVENQIKLRLKANPVPINIPIGAEDTFIGVIDLVQMKAIVWNNETMGAKYDVEEIPSDLLEKAKQYREKLVEAVAEQDEALMEKYLGGEELSVEEIKKGIKTGCLNMSLVPMLCGSSFKNKGVQTLLDAVIDYLPAPTEVVDIRGIDPKTEEEVFVKSSDDGEFAGLAFKIMTDPFVGQLTFVRVYRGKLESGSYVYNSTKDKKERVGRLLKMHSNKREDIKEVYAGEICAFVGLKDTLTGDTLCDEKNAVVLERMEFPEPVIHIAVEPKTKADQEKMGVALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEIGQPQVAFRETIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPGSGYEFVNEISGGVIPKEYIPAVDKGIQEAMQNGVLAGYPVVDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRAANPVLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVNAFVPLVEMFGYSTDLRSATQGRGTYSMEFDHYGEVPSNIAKEIVEKRKG
>NZ_CP032478.1|WP_001254352.1|261285_261753_+|30S-ribosomal-protein-S7
MRRRKAPVREILGDPVYGNKVVTKFINKMMFDGKKSVAEKIIYKAFNKIEEKSGEKGIEVFEKALERVRPLVEVRSRRVGGATYQVPVEVRASRQQSLSIRWILEATRKRNERMMVDRLANELMDAASDKGAAFKKKEDVHKMAEANKAFAHYRW
>NZ_CP032478.1|WP_001142321.1|260862_261270_+|30S-ribosomal-protein-S12
MPTINQLIRKERKKVVKKTKSPALVECPQRRGVCTRVYTTTPKKPNSALRKVAKVRLTSKFEVISYIPGEGHNLQEHSIVLVRGGRVKDLPGVKYHIVRGALDTAGVNKRTVSRSKYGTKKAKATDKKATDNKKK
>NZ_CP032478.1|WP_139519198.1|252101_260774_+|DNA-directed-RNA-polymerase-subunit-beta/beta'
MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKEGKESGIEKVFKSIFPIQDEHNRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQSIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLNKLIYTGQIIPDRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIPFASLDANQRMEFDLKDPQGKIILLAGKKLTSRKIKELKENHLEWVEYPMDILINRHLAEPVMVGKEVLLDMLTQLDKNRLEKIHDLGVQEFVIINDLALGHDASIIHSFLADYESLKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELHSGLVKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINNLSTFTRVNDLGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIVLNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTGIEKIIARDSWGAIKANRAGVVEKIDSKNIYILGEGKEEAYIDAYSLQKNLRTNQNTSFNQVPIVKVGDKVGAGQIIADGPSMDKGELALGKNVRVAFMPWNGYNFEDAIVVSERITKDDIFTSTHIYEKEVDARELKHGAEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMILVGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDARVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPKEEIASINRFTLASLVKKYSKEVQNHYEVTKNNFLEQKKVLGEEHEEKLSILEKDDILPNGVIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQILEMHLGLVGKEFGKQIASMLEDKTKDFAKELRAKMLEIANAINEKDPLTIHVLENCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIFGDDVDEDGAPKPIMIKEDDRPKDFSSFQLTLASPEKIHSWSYGEVKKPETINYRTLKPERDGLFCMKIFGPTKDYECLCGKYKKPRFKDIGTCEKCGVAITHSKVRRFRMGHIELATPVAHIWYVNSLPSRIGTLLGVKMKDLERVLYYEAYIVKEPGEAAYDNEGTKLVMKYDILNEEQYQNISRRYEDRGFVAQMGGEAIKDLLEEIDLITLLQSLKEEVKDTNSDAKKKKLIKRLKVVESFLNSGNRPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEIIVRNEKRMLQEAVDVLFDNGRSTNAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPNLKMDECGLPKNMALELFKPHLLSKLEERGYATTLKQAKRMIEQKSNEVWECLQEITEGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVPLSQEAIAECKVLMLSSMNILLPASGKAVAIPSQDMVLGLYYLSLEKSGVKGEHKLFSSVNEIITAIDTKELDIHAKIRVLDQGNIIATSAGRMIIKSILPDFIPTDLWNRPMKKKDIGVLVDYVHKVGGIGITATFLDNLKTLGFRYATKAGISISMEDIITPKDKQKMVEKAKVEVKKIQQQYDQGLLTDQERYNKIIDTWTEVNDKMSKEMMTAIAKDKEGFNSIYMMADSGARGSAAQIRQLSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHGARKGLADTALKTANAGYLTRKLIDVSQNVKVVSDDCGTHEGIEITDIAVGSELIEPLEERIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITIRTPVTCKAPKGVCAKCYGLNLGEGKMSYPGEAVGVVAAQSIGEPGTQLTLRTFHVGGTASRSQDEREIVASKEGFVRFYNLRTYTNKEGKNIIANRRNASILVVEPKIKAPFDGELRIETVYEEVVVSVKNGDQEAKFVLRRSDIVKPSELAGVGGKIEGKVYLPYASGHKVHKGGSIADIIQEGWNVPNRIPYASELLVKDNDPIAQDVYAKEKGTIKYYVLEANHLERTHGIKKGDMVSEKGLFAVIADDNGREAARHYIARGSEILIDDNSEVSANSVISKPTTNTFKTIATWDPYNTPIIADFKGKVNFVDVIAGVTVAEKEDENTGITSLVVNDYIPSGYKPSLFLEGANGEEARYFLEPKTSIAISDGSSVEQAEVLAKIPKATVKSKDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKPIRNKEHIIVTSKDGRPMDYFVDKGKQILVHADEFVHAGEAMTDGVISSHDILRISGEKELYKYIVSEVQQVYRRQGVSIADKHIEIIVSQMLRQVRILDSGDSKFIEGDLVSKKLFKEENARVIALKGEPAIAEPVLLGITRAAIGSDSIISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGTGMYKNKKIVLRALEDGPKF
>NZ_CP032478.1|WP_001922115.1|251502_251880_+|50S-ribosomal-protein-L7/L12
MAISKEEVLEYIGSLSVLELAELVKMFEEKFGVSATPTVVAGTAVAGGAAAESEEKTEFNVILADSGAEKIKVIKVVREITGLGLKEAKDATEKTPHVLKEGVNKEEAETIKKKLEEVGAKVEVK
>NZ_CP032478.1|WP_001171718.1|250963_251458_+|50S-ribosomal-protein-L10
MQKQHQRQHKVELVANLKSQFADAKALLICDYKGLSVKKLEALRNKARNQGIKVQVIKNTLAHIAMKEAGYSDLDLKETNVFLWGGDQIALSKLVFDFQKEHKDHFVLKAGLFDKESVSVAHVEAVSKLPSKEELMGMLLSVWTAPARYFVTGLDNLRKAKEEN
>NZ_CP032478.1|WP_014536785.1|271220_271964_-|carbonic-anhydrase
MKKTFLIALVLATSLIGAENTKWDYKNKENGPHRWDKLHKDFEVCKSGKSQSPINIEHYYHTQDKADLQFKYAASKPKAVFFTHHTLKASFEPTNHINYRGHDYVLDNVHFHAPMEFLINNKTRPLSAHFVHKDAKGRLLVLAIGFEEGKENPNLDPILEGIQKKQNFKEVALDAFLPKSINYYHFNGSLTAPPCTEGVAWFVIEEPLEVSAKQLAEIKKRMKNSPNQRPVQPDYNTVIIKSSAETR
>NZ_CP032478.1|WP_128077801.1|272235_273411_+|sugar-transporter
MMITKQSYQRFALIRVFVFSLSAFIFNTTEFVPVALLSDIAKSFEMESATVGLMITAYAWVVSLGSLPLMLLSAKIERKRLLLFLFALFILSHILSALAWNFWVLLISRMGIAFAHSIFWSITASLVIRVAPRNKKQQALGLLALGSSLAMILGLPLGRIIGQILDWRSTFGVIGGVATLIMLLMWKLLPHLPSRNAGTLASVPILMKRPLLVGIYLLVIMVISGHFTTYSYIEPFIIQISQFSPDITTLMLFVFGLAGVAGSFLFGRLYAKNSRKFIAFAMVLVICPQLLLFVFKNLEWVIFLQIFLWGIGITSLTIALQMRVLQLAPDATDVASAIFSGSYNVGIGSGALFGSIVIHQLGLGYIGFVGGALGLLALFWLRFITIKFKKT
>NZ_CP032478.1|WP_139519204.1|273578_274958_+|HP1184-family-multidrug-efflux-MATE-transporter
MLKKKIDLHKDSIRKLFFYYFIPLAFSMISLSTYSMIDGMFVGKKLGKEAIAAVNIAWPIFPGLIAYELLFGFGAASIVGYFLGQNKTHRARLVFSSVFYFVAISAFILSMALLPFSETIARFFGSNDALLGMSKRYIEIILMGAVFMVLHPLADVFVVNDKRPILAMVAMLIGSLANIFFNYWFIFVLEVGVQGSAIATVIGHAIGVLVLMQHFWFKKGQLYFIKRFSLSSVISSAKSGVPQSTAEFSASIMILLFNTAIMHTAGERFVSVYGIVMYNAIIFFTTLFAISQGIQPIASFSYGARNLERVKEVFIFGLKAAFCIGVVFYGAYYFLDEFLIKLYLQPSEQDPLFMQETKRAMNIYYVGYVFLGMNLLCAVFFQSIQRAKSSFIITLSHTLGFIIVLLPILSHFYGINGIWVTYPIAQFLAFLVALGVTYYEIKKGVFTAYKEKNPIALKT
>NZ_CP032478.1|WP_000542870.1|274983_276135_+|cation:proton-antiporter
MHAEFFTFALIMLLIVMAPYMSRISRLPITVVEILFGSVGAYVGFIEPTKGFEIMSEIGFLFLMFLCGLEVEIYLFKKLGVSLLKRIFAYLLILYTLSFILTFSLNLEPIFMVIFPIISLGMIMTLVKDYRKEILWLDLVLKVGVIGELLSIFGLVVVDGVYSHGLGMDLIKDLGILIVFLILIIVAFQIFKTLFWWFPHLKLFVMPKSSQFNQDVRFSLMLFFSLVAIVVWLKIEMVLGAFLAGLVVSTFFPHKSELIHKLNDVGFGFFVPLFFIHVGSTLDLKLVFLNPHLILQGILIVIAMLSLHLITSTLLWRKYFKEAKHLFSFALGASMPLTFLVTTAAVGLKAQAISQNTYYALLMAAIFEGVLFTIAIKMLNKKA
>NZ_CP032478.1|WP_000312860.1|276143_276905_-|tRNA-2-thiocytidine(32)-synthetase-TtcA
MAYEISKKVLHIVGKTNATYKLIEEGDKILLGLSGGKDSIMLACILARMQKHAPFKFDFKAVTVHYGLGEDLKWLSDLCQEQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVESFFMNFTYNGSLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNCPAKQPTSDKPPIARLATKNFLKEMQNLHPRFFDSLENAFNNVQASSFSDARYLDA
>NZ_CP032478.1|WP_139519205.1|276923_278255_-|MFS-transporter
MFKKIFPLALVSSLRFLGLFIVLPVISLYADSFHSSSPLLVGLAVGGAYLTQIVFQTPMGILSDKIGRKVVVMVCLLLFLAGSLVCFIANDIITLVIGRFIQGMGALGGVVSAMVADEVKEEERTKAMAIMGAFIFISFTISMAIGPGVVAFFGGAKWLFLLTAILTLLSLLMLLKVKDAPKISYQIKNIKAYQPNSKALYLLYLSSFFEKAFMTLIFVLIPLALVNEFYKDESFLILVYVPGALLGVLSMGIASVMAEKYNKPKGVMLSGVLLFIMSYLCLFLADSSFLGKYLWLFILGVAFFFIGFATLEPIMQSLASKFAKVHEKGKVLGQFTTFGYLGSFVGGVSGGLSYHHLGVSNTSLIVVALGLIWGLSLFLLNNPSKQKNVYFPLDAYNEEQFETLGDKIIEWYVNISEEIIIVKYNSDHISEEEIIRLAQNFRK
>NZ_CP032478.1|WP_115043752.1|278582_279839_+|NupC/NupG-family-nucleoside-CNT-transporter
MIFSSLFSVVGMAVLFLIAWVFSSNKRAINYRTIVSAFVIQVALGALALYVPLGREMLQGLASGIQSVISYGYEGVRFLFGNLAPNAKGDQGIGGFVFAINVLAIIIFFASLISLLYYLKIMPLFINLIGGALQKCLGTSKAESMSAAANIFVAHTEAPLVIKPYLKSMSDSEIFAVMCVGMASVAGPVLAGYASMGIPLPYLIAASFMSAPGGLLFAKIIYPQNETISSHADVSAEKHVNAIEAIANGASTGLNLALHVGAMLLAFVGMLALINGLLGVVGGFLGMEHLSLGLILGTLLKPLAFMLGIPWSQAGIAGEIIGIKIALNEFVGYMQFLPYLGDNPPLILSEKTKAIITFALCGFANLSSVAMLIGGLGSLVPKKKDLIIRLALKAVLVGTLSNFMSATIAGLFIGLNAH
>NZ_CP032478.1|WP_139519206.1|279850_281092_+|phosphopentomutase
MQKRVVILLLDSFGIGASEDAKDFGDLGANTLGNIAKACFNNLADSNDRSGALKLPYLESLGLGLSALEAANELPLGFQPQPNLIGAYAYAKELSSAKDTISGHWEMMGAPVLFEWGYFKDKTHSFPKEILDEIMHKTKIKGYLGNCHASGTEIIKDLGEKHLETLYPIFYTSADSVFQIAAHEEKFGLDNLYALCEEVFQILEPLKIARVIARPFIGTNREDFKRTAKRKDYAIKPHKKLLFETFIEEKRGEVISIGKIADIYAHVGITQKFKAGSLMELCDVTLERVKNAKNNSLIFTNFVHFDSDYGHRRDISGYANALEYFDTRLKEFLENLKENDLLILCADHGCDPSFKGTDHTREYIPVLFYHKDLQPAFLGKSDSFADIGQSIAHFLGLSPLDYGKNLLNFKGQP
>NZ_CP032478.1|WP_139519207.1|281088_281790_+|purine-nucleoside-phosphorylase
MTPHINAKIGDFYPQCLLCGDPLRVSYIAKKFLQDAKEITNVRNMLGFSGKYKGKGISLMGHGMGIASCTIYVTELIKTYQVKELLRIGTCGAISPKVGLKDIIMATGASTDSKTNRVRFLNHDLSATPDFELSLRAYQTAKRLGIDLKVGNIFSSDFFYSFETHAFDLMAKYNHLAIEMEAAGLYATAMELNAKALCLCSVSDHLITKEALSPKERIESFDNMITLALEMMG
>NZ_CP032478.1|WP_139519208.1|282262_284164_+|outer-membrane-beta-barrel-protein
MKKTKKTILLSLTLASSLLHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSDTYENLNKLLANHSHSNPEAINANSATAINQAIGNLNKSAQSLIDTTDNSPAYQATLLALKSTVGLWNSIAYAVICGGYTDKPNHNTTETFYNQPGQGSNSITCGGHVGLLAAGKGNSLSIEQFATLNKAYQIIQAALKQGLPALSNTKKTVEVTIKTATNANNINVNNDNNNAADATIETKNTYINDAQNLLTQAQTIINTLQDNCPMLKGKSSSSNGGTNGANTPSWQTSANQNSCSVFGTEFSAISDMISNAQNIVQETQQLNATPLKSIAQPHNFNLNSPNSIALAQSMLKNAQSQAAVLKLANQVGSDFNRISTGVLKNYIEECNANASSESVSNNTWGKGCAGVKQTLTSLESSNASFSSQTPQINQAQNLANTIVQELGHNPFKRVGIISSQTNNGAMNGLGVQVGYKQFFGEKKRWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLLFNFINDKNTNFLGKNNQISFGLFGGIALAGTSWLNSQFVNLKTISNVYSAKVNTANFQFLFNLGLRTNLARPKKKDSHHAAQHGMELGVKIPTINTNYYSFLDTKLEYRRLYSVYLNYVFAY

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Crispr_ID: NZ_CP032478_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP032478_3

768137-768334

Orphan

I-B

Consensus_repeat	Method
TTCAATCAAGGCACTTATAA	PILER-CR
TTCAATCAAGGCACTTATAATTTTAAT	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP032478_3

>merge|NZ_CP032478|3|768137-768334|PILER-CR,CRISPRCasFinder
TTCAATCAAGGGACTTATCACTTTAGTAACAGCACAAGTTCAAGCTTTGATAATAGTAGTTTCAATCAAGGGAGTTATCACTTTAATAGCGCCCAATCCACTTTTGAAAACAGCAATTTCAATCAAGGCACTTATAATTTTAATGACAATACTAGCTTTAATAACGACACCTTCAATCAAGGCACTTATAATTTTAAT

>NZ_CP032478|3|1|768137-768327|PILER-CR
TTCAATCAAGGGACTTATCA	CTTTAGTAACAGCACAAGTTCAAGCTTTGATAATAGTAGT
TTCAATCAAGGGAGTTATCA	CTTTAATAGCGCCCAATCCACTTTTGAAAACAGCAAT
TTCAATCAAGGCACTTATAA	TTTTAATGACAATACTAGCTTTAATAACGACACC
TTCAATCAAGGCACTTATAA

>NZ_CP032478|3|3|768137-768334|CRISPRCasFinder
TTCAATCAAGGGACTTATCACTTTAGT	AACAGCACAAGTTCAAGCTTTGATAATAGTAGT
TTCAATCAAGGGAGTTATCACTTTAAT	AGCGCCCAATCCACTTTTGAAAACAGCAAT
TTCAATCAAGGCACTTATAATTTTAAT	GACAATACTAGCTTTAATAACGACACC
TTCAATCAAGGCACTTATAATTTTAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP032478.1\|WP_139519480.1\|762085_765343_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP032478.1\|WP_139519483.1\|774985_776095_+\|Hop-family-outer-membrane-protein-HopJ/HopK	unknown	unknown	gnl\|CDD\|280099
NZ_CP032478.1\|WP_139519478.1\|757170_758715_-\|outer-membrane-beta-barrel-protein-HofG	unknown	unknown	gnl\|CDD\|334957
NZ_CP032478.1\|WP_139519474.1\|750351_752379_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|223288
NZ_CP032478.1\|WP_139519481.1\|766277_767276_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
NZ_CP032478.1\|WP_001115881.1\|776154_776361_-\|4-oxalocrotonate-tautomerase-family-protein	unknown	unknown	gnl\|CDD\|129125
NZ_CP032478.1\|WP_000426949.1\|779162_779705_+\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|129173
NZ_CP032478.1\|WP_000041792.1\|781428_782088_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032478.1\|WP_139519485.1\|778181_779162_+\|zinc-metalloprotease-HtpX	unknown	unknown	gnl\|CDD\|235081
NZ_CP032478.1\|WP_001240272.1\|765440_766133_-\|Bax-inhibitor-1/YccA-family-protein	unknown	unknown	gnl\|CDD\|198414
NZ_CP032478.1\|WP_139519488.1\|782091_782694_+\|6-pyruvoyl-tetrahydropterin-synthase-family-protein	unknown	unknown	gnl\|CDD\|223792
NZ_CP032478.1\|WP_050831075.1\|776519_777101_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|273176
NZ_CP032478.1\|WP_139519473.1\|748604_749216_+\|restriction-endonuclease	unknown	unknown	unknown
NZ_CP032478.1\|WP_139519486.1\|779720_780632_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NZ_CP032478.1\|WP_139520017.1\|749208_750348_+\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|223897
NZ_CP032478.1\|WP_139519479.1\|761649_762081_-\|Sua5-YciO-YrdC-YwlC-family-protein	unknown	unknown	gnl\|CDD\|376519
NZ_CP032478.1\|WP_139519487.1\|780628_781432_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP032478.1\|WP_139519477.1\|754790_756380_+\|Hop-family-adhesin-AlpB	unknown	unknown	gnl\|CDD\|280099
NZ_CP032478.1\|WP_139519476.1\|753215_754769_+\|Hop-family-adhesin-AlpA	unknown	unknown	gnl\|CDD\|280099
NZ_CP032478.1\|WP_139519484.1\|777097_778243_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|272903

Protein	Function_ID	Function_description	E-value
NZ_CP032478.1\|WP_139519480.1\|762085_765343_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP032478.1\|WP_139519483.1\|774985_776095_+\|Hop-family-outer-membrane-protein-HopJ/HopK	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	7.70991e-49
NZ_CP032478.1\|WP_139519478.1\|757170_758715_-\|outer-membrane-beta-barrel-protein-HofG	gnl\|CDD\|334957	pfam02521, HP_OMP_2, Putative outer membrane protein. This family consists of putative outer membrane proteins from Helicobacter pylori (campylobacter pylori).	3.34554e-179
NZ_CP032478.1\|WP_139519474.1\|750351_752379_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	7.52445e-135
NZ_CP032478.1\|WP_139519481.1\|766277_767276_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	3.42498e-161
NZ_CP032478.1\|WP_001115881.1\|776154_776361_-\|4-oxalocrotonate-tautomerase-family-protein	gnl\|CDD\|129125	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function. [Energy metabolism, Other].	2.46126e-26
NZ_CP032478.1\|WP_000426949.1\|779162_779705_+\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|129173	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I. alternate names: Punch (Drosophila),GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	1.19934e-105
NZ_CP032478.1\|WP_139519485.1\|778181_779162_+\|zinc-metalloprotease-HtpX	gnl\|CDD\|235081	PRK02870, PRK02870, heat shock protein HtpX; Provisional.	0
NZ_CP032478.1\|WP_001240272.1\|765440_766133_-\|Bax-inhibitor-1/YccA-family-protein	gnl\|CDD\|198414	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins. This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	1.36782e-52
NZ_CP032478.1\|WP_139519488.1\|782091_782694_+\|6-pyruvoyl-tetrahydropterin-synthase-family-protein	gnl\|CDD\|223792	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism].	7.30996e-20
NZ_CP032478.1\|WP_050831075.1\|776519_777101_+\|recombination-protein-RecR	gnl\|CDD\|273176	TIGR00615, Recombination_protein_RecR, recombination protein RecR. All proteins in this family for which functions are known are involved in the initiation of recombination and recombinational repair. RecF is also required. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	2.19239e-97
NZ_CP032478.1\|WP_139519486.1\|779720_780632_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	3.31188e-73
NZ_CP032478.1\|WP_139520017.1\|749208_750348_+\|N-6-DNA-methylase	gnl\|CDD\|223897	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	4.55023e-52
NZ_CP032478.1\|WP_139519479.1\|761649_762081_-\|Sua5-YciO-YrdC-YwlC-family-protein	gnl\|CDD\|376519	pfam01300, Sua5_yciO_yrdC, Telomere recombination. This domain has been shown to bind preferentially to dsRNA. The domain is found in SUA5 as well as HypF and YrdC. It has also been shown to be required for telomere recombniation in yeast.	2.49017e-05
NZ_CP032478.1\|WP_139519487.1\|780628_781432_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	5.48341e-126
NZ_CP032478.1\|WP_139519477.1\|754790_756380_+\|Hop-family-adhesin-AlpB	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	7.75305e-54
NZ_CP032478.1\|WP_139519476.1\|753215_754769_+\|Hop-family-adhesin-AlpA	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	2.42652e-54
NZ_CP032478.1\|WP_139519484.1\|777097_778243_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|272903	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family. an EGAD loading error caused one member to be called surE, but that's an adjacent gene. MJ11364 is a strong partial match from 50 to 230 aa. [Protein synthesis, tRNA and rRNA base modification].	1.95848e-136

>NZ_CP032478.1|WP_139519481.1|766277_767276_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MKIFINGFGRIGRCVLRAILERNDANPKLEVVGINDPANWEILAYLLEHDSVHGLLFKEARYSNYKLIIGSLEIPVFNSIKDLKGVDVIIECSGKFLEPKTLENYLLLGAKKILLSAPFMGEYDEKQYPTLVYGVNHFCYQNQAIVSNASCTTNAIAPICAILDKAFNIKEGMLTTIHSYTSDQKLIDLVHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRVPSLDVSMIDLSLFLEKKAFKDPINDLLIEASKGVLKGVLEIDLKERVSSDFISNPHSVIIAPDLTFTLENMVKIMGWYDNEWGYSNRLVDMVQFMYHY
>NZ_CP032478.1|WP_001240272.1|765440_766133_-|Bax-inhibitor-1/YccA-family-protein
MALYDRANSRNAYAEDSLLHESELVSFVKTTYKFFAGSLLLATIGALLGLMNFQAVVQYKWVFFIAEIAAFFGLMFSKSKPGLNLFMLFAFTSLSGVTLVPLLGMVIAKAGLGAIWQALGMTTIVFGLMSVYALKTKNDLANMGKMLFIALIVVVVCSLINLFLGSPMFQVVIAGASAILFSLYIAYDTQNIVKGMYDSPIDAAVSLYLDFLNVFISILQIIGIFSDRDK
>NZ_CP032478.1|WP_139519480.1|762085_765343_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDISNILLIGSGPIVIGQACEFDYSGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITGENIAAIIKKEKIDAILPTMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAYSELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESLLGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFAILREIGVDTGGSNVQFAIHPKTLRMVVIEMNPRVSRSSALASKATGFPIAKVATMLAVGFSLDEIKNDITNTPASFEPSLDYIVVKIPRFAFEKFAGVSSTLGTSMKSIGEVMAIGGNFLEALQKALCSLENNWLGFESLSKDLEMIKKEIRRPNPKRLLYIADAFRLGVSVDEVFELCQIDRWFLSQIQKLVKAEEGINSSVLTDAKKLRGLKNLGFSDARIAAKIKENENLEVSPFEVELARMHLQIAPHFEEVDTCAAEFLSLTPYLYSTYAPNPLSPIENKQEKQEKKILIIGSGPNRIGQGIEFDYCCVHASFALKDLNIKSVMLNCNPETVSTDYDTSDTLYFEPIHFECVKSIIQRERVDGIIVHFGGQTPLKLAKDLAKMQAPIIGTPFKVIDIAEDREKFSLFLKELDIKQPKNGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQILENIEELRHYLESVTHSLEISPKNPLLIDKFLEKAVELDVDVICDKKEVYIAGILQHIEEAGIHSGDSACFIPSTLSPEILDEIERVSAKIALHLGVVGLLNIQFAVYENSLYLIEVNPRASRTVPFLSKALGVPLAKVATRVMVLEDLKEALKFYDKKNIVEYSKGVYKPKMPHFVALKEAVFPFNKLYGSDLILGPEMKSTGEVMGIARSLGLAFFKAQTACFNPIKNKGLIFVSIKDKDKEEACVLMKRLVQLGFELCATEGTHKALEKAGVKSLKVLKISEGRPNIMDLMMNGEISMAINTSDHKSQDDAKLIRASVLKNHVSYFTTLSAIEVLLLALEESSQKDELLALQDYLK
>NZ_CP032478.1|WP_139519479.1|761649_762081_-|Sua5-YciO-YrdC-YwlC-family-protein
MALVYLAQSDTTIGLLSKDSEKLNALKGRPKNQSVLIESADFSTLKSLVHAPNAFKNLIRRSAKTTFIYPNSKAVRVVKGRHGDFLKRFKTLYSTSANLTQCAYDKEIASNLADVIVSDERGLFESASSKIFRLYKDKKVRIR
>NZ_CP032478.1|WP_139519478.1|757170_758715_-|outer-membrane-beta-barrel-protein-HofG
MRQEKYFLTSSLSLLSFLLCPVEAFDYRFSGRVENFSKIGFNNSQINTKKGIYPTESFIDIVTLAQVKVNLLPKGTENHRLSVSLGGAIAAIPYDKTKYDINQANGKIFGSIVENFIGGYHGYFFNKYLGPAYAGTSQSASYHARPYVVDTAFLRYDYKDVFGFKAGRYEANIDFMSGSNQGWEVYYQPYKTETQRLRFWWWSSFGRGLAFNSWIYEFFATVPYLKKGGNPNNSNDFINYGWHGITTTYSYKGLDAQFFYYFAPKTYNAPGFKLVYDTNRNFENVGFRSQSMIMTTFPLYYRGWYNPETNTYSLEDSTPHGSLLGRNGVTLNIRQVFWWDNFNWSIGFYNTFGNSDAFLGSHTMPRGNNTSYIGSEISITTRHAGMIGYDFWDNTAYDGLADAITNANTFTFYTSVGGIHKRFAWHVFGRVSHANKNVLGQVGRANEYSLQFNASYAFTESVLLNFRITYYGARINKGYQAGYFGAPKFNNPDGDFSANYQDRSYMMTNLTLKF
>NZ_CP032478.1|WP_139519477.1|754790_756380_+|Hop-family-adhesin-AlpB
MKQNLKPFKMIKENLMTQSQKVRFLAPLSLALSLSFNPVGAEEDGGFMTFGYELGQVVQQVKNPGKIKAEELAGLLNSNTTNNTNINIAGTGGNVAGTLGNLFMNQLGNLIDLYPTLNTANITQCGATNSGSSGAATAAATTSNSPCFQGNLTLYKEMVSSIKTLSQDISKNIFQGNNNTTSANLSNQLSELNTASVYLAYMNSFLNANNQAGGIFQNNTDQAYGNGVTAQQIAYILKQASITMGPSGDSGAAAAFLDAALAQHVFNSANAGNDLSAKEFTSLVQNIVNNSQNALTLANNANISNSTGYQVSYGGNIDQARSTQLLNNTTNTLAKVTALNNELKANPWLGNFAAGNSSQVNAFNGFITKIGYKQFFGENKNVGLRYYGFFSYNGAGVGNGPTYNQVNLLTYGVGTDVLYNVFSRSFGSRSLNAGFFGGIQLAGDTYISTLRNSPQLASRPTATKFQFLFDLGLRMNFGILKKDLKSHNQHSIEIGVQIPTIYNTYYKAGGAEVKYFRPYSVYWVYGYAF
>NZ_CP032478.1|WP_139519476.1|753215_754769_+|Hop-family-adhesin-AlpA
MIKKNRTLFLSLALCASISYAEDDGGFFTVGYQLGQVMQDVQNPGGAKSDELARELNADVTNNILNNNTGGNVAGALSNAFSQYLYSLLGAYPTKLNSNDVSANALLSGAVGSGTCAAAGTAGGTSLNTQSACTAAGYYWLPSLTDRILSTIGSQTNYGTNTNFPNMQQQLTYLNAGNVFFNAMNKALEKNGTTTTSGTNGATGSDGQTYSAQAIQYLQGQQNILNNAANLLKQDELLLEAFNSAVAANIGNKEFNSAVFTGLVQGIIDQSQAVYNELTKNTISGSAVNNAGINSNQANAVQGRASQLPNALYNAQVTLDKINALNNQVRSMPYLPQFRAGNSRATNILNGFYTKIGYKQFFGKKRNIGLRYYGFFSYNGASVGFRSTQNNVGLYTYGVGTDVLYNIFSRSYQNRSVDMGFFSGIQLAGETFQSTLRDDPNVKLHGKINNTHFQFLFDFGMRMNFGKLDNKSNRHNQHTVEFGVVVPTIYNTYYKSAGTTVKYFRPYSVYWSYGYSF
>NZ_CP032478.1|WP_139519474.1|750351_752379_+|UvrD-helicase-domain-containing-protein
MLETLQLNPEQLKAAKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKNAIDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSSKNPEHTPYAALYENILDEFENTKKKHNYIDYNDLLLLFKKAMLERPSPYKEVLCDEFQDTNPLQESILDAINPPSLFCVGDYDQSIYAFNGADISIISNFTQKYKNAQVFTLTKNYRSSKEILDLANQVIQRNERIYPKNLEVVKSGKFNKPTLLNYNDNIAQCQDIAKRIVMRKNFKEVAVIFRNNASADQLEAALRSHNVPSKRKGSASFFESKEVALALDICMLLFNPKDIMAAIHILSYISDIGSNTAKDIHEALMLLGNGDLKSALIQPNKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVINKAFHSHPVLMHPKISLNGAKMLSDFFILYTKAPTHSPSALIKHILESAFFQTFKTRLLKERSKNKDGSYNEFKKLQVQKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSNEATQGEGVNLLSVHASKGLEFKDVYIIDLMEGRFPNHKLMNTGGGIEEERRLFYVAITRAKENLWLSYAKNELRENAKPKEHKPSVFLYEAGLLKPDSK
>NZ_CP032478.1|WP_139520017.1|749208_750348_+|N-6-DNA-methylase
MNNLDIKTLGQVFTPKNIVDFMLTLKHNQGSVLEPSAGDGSFLKRLKKAVGIEIDPKICPKNALCMDFFDYSLENQFDTIIGNPPYVKHKDIAPSTKEKLHYSLFDERSNLYLFFIEKAIKHLKPQGELIFITPRDFLKSTSSVKLNEWIYKEGTITHFFELGDQKIFPNAMPNCVIFRFCKGDFSRITNDGLQFLCKKGILYFLNQSYTQKLSEVFKVKVGAVSGCDKIFKNEKYGNAEFVTSITKRTNVLEKMVFVNEPNDYLLQHKDSLMQRKIKKFNENNWFEWGRMHHISPKKRIYVNTKTRQKNPFFIHQCPNYDGSILALFPYNQNLDLQNLCDKLNAINWQELGFVCDGRFLFSQRSLENALLPKDFLNLG
>NZ_CP032478.1|WP_139519473.1|748604_749216_+|restriction-endonuclease
MIPTQLNEIAEFLKTNPYNLSQPLQDGCLNSSINEKEILNTIKHSFPIQLPKAREWWDFSFEENDIFYPVNITTTKTADNLNGKLGIYYALCGLLPEFNNEIAWEKYFQKLHEDLGKNTDRDYYFLIINKNDPKDIFINSLKGIQTLQPNNLPFQCKWDNNREIVQRNFIESKNFILSALAKSVKLRANIYLTFKEVFGEFFE
>NZ_CP032478.1|WP_139519483.1|774985_776095_+|Hop-family-outer-membrane-protein-HopJ/HopK
MQFQKTLLHSSFFLPLLLSFCIAEENGAYASVGFEYSISHAVEHNNPFLNQERIQIISNAQNQIYKLNQVKNEITNMQNTFNYINNALKNHAKLTPTEMQAEQYYLQSTLQNIEKIVMLSGGVASNPQLAQALEKMQEPITNPLELAENLKNLELQFTQSQNRMLSSLSSQIAQISNSLNALDPNSYSKNISSMYGVSLSVGYKHFFTKKKNQGLRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLYNFIDNAKKHSSVGFYAGFALAGSSWVGSGLGMWVSQMGFINNYLTDYHAKMHTSFFQIPLNFGVRVNVNRHNGFEMGLKIPLAVNSFYETHGKGLNTSLFFKRLVVFNVNYVYSF
>NZ_CP032478.1|WP_001115881.1|776154_776361_-|4-oxalocrotonate-tautomerase-family-protein
MPFINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLGGESVHHLRQKN
>NZ_CP032478.1|WP_050831075.1|776519_777101_+|recombination-protein-RecR
MNTYKNSLNHFLNLVDCLEKIPNVGKKSAFKIAYHLGLENPYLALKITHALENALENLKTCASCNALSESEVCEICSDESRQNSQLCMVLHPRDVFILEDLKDFLGRYYVLNSIEEVDFNALEKRLIKENIKEIIFAFPPTLANDSLMLYIEDKLQHFHLTFTKIAQGVPTGVNFENIDSVSLSRAFNSRIKA
>NZ_CP032478.1|WP_139519484.1|777097_778243_+|tRNA-pseudouridine(13)-synthase-TruD
MNLNFMPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVKIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTSNFQERNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTKQVLEQIVQFGMPNYFGPQRFGKFNDNHKEGLKILQNKTKFAHQKLNAFLISSYQSYLFNVLLSKRLEISKIISDFSIKENLEFFKQKNLSVNSNALKALKNQAHPFKILEGDVMRHYPYGKFFDALKLEKESERFLKKEAVPTGLLDGKKALYAKNLSFEIEKEFQHNLLNSHAKTLGSRRFFWVFAENVTSQYIKEKAQFELGFYLPKGSYASALLKEIKHEKGENDDEF
>NZ_CP032478.1|WP_139519485.1|778181_779162_+|zinc-metalloprotease-HtpX
MRAHCSKKSSMRKEKMMTNFEKIIAQNRIKTNAVLATYCAIFAFIGLLVDAIRINANDLGIALFKLITFQIFPTITIIMFLAAFVVIVVCIQNFSSIMLSGDGYKLIDKSKVLSSKENQIHRLLLELLEEANLHFEPKLYIINAPYMNAFASGWDESNSLIALTSALIERLDKDELKAVIAHELSHIRHNDIRLTMCVGILSNIMLLVANFSVYFFMGNRKNSGANLARMILLALQIVLPFLTLILQMYLSRTREYMADSGAAFLMHDNKPMIRALQKISNDYTNNDYKEIDKNSTRSAAYLFNAEMFSTHPSVKNRIQSLRKRVI
>NZ_CP032478.1|WP_000426949.1|779162_779705_+|GTP-cyclohydrolase-I-FolE
MENFFNQFFENIGEDKNREGLKETPKRVQELWKFLYKGYKEDPKVALKSAYFQGVCDEMIVAQNIEFYSTCEHHLLPFLGNISLGYIPKEKIVGISAIAKLIEIYSKRLQIQERLTTQIAETFDEIIEPRGVIVVCEAKHLCMSMQGVQKQNAIIKTSVLRGLFKKDPKTRAEFMQLLKS
>NZ_CP032478.1|WP_139519486.1|779720_780632_+|polyprenyl-synthetase-family-protein
MSSPNLSFYYNECERFESFLKNHHLHLESFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCSLVGQKDYSNQQTEYFKIALSIECLHTYSLIHDDLPCMDNATLRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELIKILSANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISTSLMMGLVASGIKDEELFKWLQAFGLKTGLCFQVLDDIIDVTQDEKESGKTTHLDGAKNSFVNLLGLKKASGYAQTLKTEVLNDLNLLKPAYPLLQENLNALLNTLFKGKT
>NZ_CP032478.1|WP_139519487.1|780628_781432_+|5'/3'-nucleotidase-SurE
MKKILLTNDDGYHAKGIKALEQALEEMAEIYVVAPKHEKSACSQCITITAPLRAEKIKGKEGRHYRIDDGTPSDCVYLAINELFKHICFDLVISGINLGSNMGEDTIYSGTVAGAIEGTIQGVPSIAISQILSNKNKNTPLSFDLAQKIIQDLVQNIFTKGYPLKGRKLLNVNVPNCSLQEYKGERITPKGYRLYKKEVHKRTDPKNESYFWLGLHPLEWQKRENEDRLSDFDAIASNHASITPLNLDLTSYDDLKSLESWHEGMLK
>NZ_CP032478.1|WP_000041792.1|781428_782088_+|hypothetical-protein
MSKNHRLAFLGLIVGVFFFFSACQHRLHMGYYSEVTGDYLFNYNSTIVVAYDRSDAMTSYYINVIVYELQKLGFYNVFTQAEFPLDKAKNVIYARIVRNISAVPFYQYNYQLIDQVNKPCYFLGGQFYCSQTPTDYYAINGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGYQMLYRDLIKSTIKRIDFNRPERYYYNLRLPLYQPCYRQ
>NZ_CP032478.1|WP_139519488.1|782091_782694_+|6-pyruvoyl-tetrahydropterin-synthase-family-protein
MVIRRLYKFCASHVVRNCSSLKCAQNIHGHNYEVEVFIETNRLDSANMALDFGLMQQEMQTFIDSFDHAHHFWDKESVEFQRFIENHCVRYVKCSFNLSAEGYALMFLYYLTKILQKSVFSNNEGELKVSSVRVHETKNGYAESFLKDLENPHFKSLVHDHCVSFSQGIQNLWHDKDFFNKIISDEKQCFFHAKPLHQIP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP032478_3	3.6\|768281\|27\|NZ_CP032478\|CRISPRCasFinder	768281-768307	27	NZ_CP045351	Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence	1090168-1090194	5	0.815
NZ_CP032478_3	3.5\|768224\|30\|NZ_CP032478\|CRISPRCasFinder	768224-768253	30	MK448589	Streptococcus satellite phage Javan632, complete genome	4593-4622	6	0.8
NZ_CP032478_3	3.5\|768224\|30\|NZ_CP032478\|CRISPRCasFinder	768224-768253	30	U88974	Streptococcus thermophilus temperate bacteriophage O1205, complete genome	23169-23198	7	0.767
NZ_CP032478_3	3.5\|768224\|30\|NZ_CP032478\|CRISPRCasFinder	768224-768253	30	NC_004303	Streptococcus phage O1205, complete genome	23169-23198	7	0.767
NZ_CP032478_3	3.5\|768224\|30\|NZ_CP032478\|CRISPRCasFinder	768224-768253	30	NZ_CP022523	Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence	752261-752290	9	0.7
NZ_CP032478_3	3.3\|768274\|34\|NZ_CP032478\|PILER-CR	768274-768307	34	NC_014534	Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence	465746-465779	10	0.706

1. spacer 3.6|768281|27|NZ_CP032478|CRISPRCasFinder matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 5, identity: 0.815

gacaatactagctttaataacgacacc	CRISPR spacer
aagaatattagctttagtaacgacacg	Protospacer
.* ****.********.*********

2. spacer 3.5|768224|30|NZ_CP032478|CRISPRCasFinder matches to MK448589 (Streptococcus satellite phage Javan632, complete genome) position: , mismatch: 6, identity: 0.8

agcgc-ccaatccacttttgaaaacagcaat	CRISPR spacer
-ccgtaccaatcgccttttgaaaacagcaag	Protospacer
  **. ******  ****************

3. spacer 3.5|768224|30|NZ_CP032478|CRISPRCasFinder matches to U88974 (Streptococcus thermophilus temperate bacteriophage O1205, complete genome) position: , mismatch: 7, identity: 0.767

agcgcccaatccacttttgaaaacagcaat	CRISPR spacer
agcgcccaaaacacttttgaaaactgatcc	Protospacer
*********  ************* *   .

4. spacer 3.5|768224|30|NZ_CP032478|CRISPRCasFinder matches to NC_004303 (Streptococcus phage O1205, complete genome) position: , mismatch: 7, identity: 0.767

agcgcccaatccacttttgaaaacagcaat	CRISPR spacer
agcgcccaaaacacttttgaaaactgatcc	Protospacer
*********  ************* *   .

5. spacer 3.5|768224|30|NZ_CP032478|CRISPRCasFinder matches to NZ_CP022523 (Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence) position: , mismatch: 9, identity: 0.7

agcgcccaatccacttttgaaaacagcaat	CRISPR spacer
tcaaggcaatctccttttgaaaacagcaac	Protospacer
   .  *****. ****************.

6. spacer 3.3|768274|34|NZ_CP032478|PILER-CR matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 10, identity: 0.706

ttttaatgacaatactagctttaataacgacacc	CRISPR spacer
ttttaatgacattaatagctttaaacgtacccca	Protospacer
*********** ** *********  ... * *

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage