CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP032903	Helicobacter pylori strain 173-A-EK1 chromosome, complete genome	2 crisprs	cas2,cas3,cas14k,DEDDh	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP032903_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP032903_1

326210-326290

Orphan

Consensus_repeat	Method
AAAAAAGATGCTAAAAAACCTAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP032903_1

>merge|NZ_CP032903|1|326210-326290|CRISPRCasFinder
AAAAAAGATGCTAAAAAACCTAAATTTAGCACAGAATTAGTCGTGGCTCACAAAGATAAAAAAGACGCTAAAAAACCTAAA

>NZ_CP032903|1|1|326210-326290|CRISPRCasFinder
AAAAAAGATGCTAAAAAACCTAAA	TTTAGCACAGAATTAGTCGTGGCTCACAAAGAT
AAAAAAGACGCTAAAAAACCTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP032903.1\|WP_001254357.1\|321853_322321_+\|30S-ribosomal-protein-S7	unknown	unknown	gnl\|CDD\|235398
NZ_CP032903.1\|WP_001142321.1\|321430_321838_+\|30S-ribosomal-protein-S12	unknown	unknown	gnl\|CDD\|235355
NZ_CP032903.1\|WP_139544931.1\|334068_335244_+\|sugar-transporter	unknown	unknown	gnl\|CDD\|179591
NZ_CP032903.1\|WP_001085997.1\|310248_310674_+\|50S-ribosomal-protein-L11	unknown	unknown	gnl\|CDD\|234661
NZ_CP032903.1\|WP_000312853.1\|337969_338731_-\|tRNA-2-thiocytidine(32)-synthetase-TtcA	unknown	unknown	gnl\|CDD\|236737
NZ_CP032903.1\|WP_139544929.1\|330317_331367_+\|DUF874-family-protein	unknown	unknown	gnl\|CDD\|283549
NZ_CP032903.1\|WP_139544923.1\|311531_312026_+\|50S-ribosomal-protein-L10	unknown	unknown	gnl\|CDD\|234632
NZ_CP032903.1\|WP_139544933.1\|336808_337960_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|223551
NZ_CP032903.1\|WP_139544930.1\|331646_332831_+\|DUF874-family-protein	unknown	unknown	gnl\|CDD\|283549
NZ_CP032903.1\|WP_139544928.1\|327549_328878_+\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|223202
NZ_CP032903.1\|WP_139544925.1\|322332_324411_+\|elongation-factor-G	unknown	unknown	gnl\|CDD\|234569
NZ_CP032903.1\|WP_039088468.1\|333053_333797_-\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|225875
NZ_CP032903.1\|WP_001018228.1\|312068_312446_+\|50S-ribosomal-protein-L7/L12	unknown	unknown	gnl\|CDD\|234671
NZ_CP032903.1\|WP_139544924.1\|312669_321342_+\|DNA-directed-RNA-polymerase-subunit-beta/beta'	unknown	unknown	gnl\|CDD\|181983
NZ_CP032903.1\|WP_139544927.1\|326438_327488_-\|lipopolysaccharide-heptosyltransferase-II	unknown	unknown	gnl\|CDD\|223928
NZ_CP032903.1\|WP_139545742.1\|328864_329905_+\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|273543
NZ_CP032903.1\|WP_139544932.1\|335403_336783_+\|HP1184-family-multidrug-efflux-MATE-transporter	unknown	unknown	gnl\|CDD\|240548
NZ_CP032903.1\|WP_139544926.1\|324930_325920_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381304
NZ_CP032903.1\|WP_001085846.1\|310718_311423_+\|50S-ribosomal-protein-L1	unknown	unknown	gnl\|CDD\|180071
NZ_CP032903.1\|WP_000220776.1\|312484_312676_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP032903.1\|WP_001254357.1\|321853_322321_+\|30S-ribosomal-protein-S7	gnl\|CDD\|235398	PRK05302, PRK05302, 30S ribosomal protein S7; Validated.	4.61403e-100
NZ_CP032903.1\|WP_001142321.1\|321430_321838_+\|30S-ribosomal-protein-S12	gnl\|CDD\|235355	PRK05163, rpsL, 30S ribosomal protein S12; Validated.	1.80166e-84
NZ_CP032903.1\|WP_139544931.1\|334068_335244_+\|sugar-transporter	gnl\|CDD\|179591	PRK03545, PRK03545, putative arabinose transporter; Provisional.	0
NZ_CP032903.1\|WP_001085997.1\|310248_310674_+\|50S-ribosomal-protein-L11	gnl\|CDD\|234661	PRK00140, rplK, 50S ribosomal protein L11; Validated.	7.22041e-90
NZ_CP032903.1\|WP_000312853.1\|337969_338731_-\|tRNA-2-thiocytidine(32)-synthetase-TtcA	gnl\|CDD\|236737	PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional.	1.11415e-68
NZ_CP032903.1\|WP_139544929.1\|330317_331367_+\|DUF874-family-protein	gnl\|CDD\|283549	pfam05917, DUF874, Helicobacter pylori protein of unknown function (DUF874). This family consists of several hypothetical proteins specific to Helicobacter pylori. The function of this family is unknown.	1.10447e-169
NZ_CP032903.1\|WP_139544923.1\|311531_312026_+\|50S-ribosomal-protein-L10	gnl\|CDD\|234632	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed.	1.77183e-49
NZ_CP032903.1\|WP_139544933.1\|336808_337960_+\|cation:proton-antiporter	gnl\|CDD\|223551	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	1.02159e-35
NZ_CP032903.1\|WP_139544930.1\|331646_332831_+\|DUF874-family-protein	gnl\|CDD\|283549	pfam05917, DUF874, Helicobacter pylori protein of unknown function (DUF874). This family consists of several hypothetical proteins specific to Helicobacter pylori. The function of this family is unknown.	1.45565e-103
NZ_CP032903.1\|WP_139544928.1\|327549_328878_+\|histidine--tRNA-ligase	gnl\|CDD\|223202	COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].	6.84707e-163
NZ_CP032903.1\|WP_001085846.1\|310718_311423_+\|50S-ribosomal-protein-L1	gnl\|CDD\|180071	PRK05424, rplA, 50S ribosomal protein L1; Validated.	4.23821e-136
NZ_CP032903.1\|WP_039088468.1\|333053_333797_-\|carbonic-anhydrase	gnl\|CDD\|225875	COG3338, Cah, Carbonic anhydrase [Inorganic ion transport and metabolism].	3.13732e-125
NZ_CP032903.1\|WP_001018228.1\|312068_312446_+\|50S-ribosomal-protein-L7/L12	gnl\|CDD\|234671	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed.	2.43265e-46
NZ_CP032903.1\|WP_139544924.1\|312669_321342_+\|DNA-directed-RNA-polymerase-subunit-beta/beta'	gnl\|CDD\|181983	PRK09603, PRK09603, DNA-directed RNA polymerase subunit beta/beta'.	0
NZ_CP032903.1\|WP_139544927.1\|326438_327488_-\|lipopolysaccharide-heptosyltransferase-II	gnl\|CDD\|223928	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].	1.71137e-88
NZ_CP032903.1\|WP_139545742.1\|328864_329905_+\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|273543	TIGR01296, Aspartate-semialdehyde_dehydrogenase, aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. [Amino acid biosynthesis, Aspartate family].	0
NZ_CP032903.1\|WP_139544932.1\|335403_336783_+\|HP1184-family-multidrug-efflux-MATE-transporter	gnl\|CDD\|240548	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump.	6.15553e-102
NZ_CP032903.1\|WP_139544926.1\|324930_325920_-\|aldo/keto-reductase	gnl\|CDD\|381304	cd19078, AKR_AKR13C1_2, AKR13C family of aldo-keto reductase (AKR). The AKR13C family includes Helicobacter pyroli aldehyde reductase (AKR13C1) and Thermotoga maritima aldo-keto reductase (AKR13C2). Aldehyde reductase (EC 1.1.1.21), also called aldose reductase, is a cytosolic NADPH-dependent oxidoreductase that catalyzes the reduction of a variety of aldehydes and carbonyls, including monosaccharides.	2.38985e-180
NZ_CP032903.1\|WP_139544925.1\|322332_324411_+\|elongation-factor-G	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	0

>NZ_CP032903.1|WP_139544926.1|324930_325920_-|aldo/keto-reductase
MQQRHLGPLKVGALALGCMGMTYGYEEVHDKKQMVKLIHKALELGINFFDTAEAYGEDNEKLLGEAIKPFKDKVVVASKFGIYYADPNDKYATMFLDSSPNRIKSAIEGSLKRLKVECIDLYYQHRMDTNTPIEEVAGVMQALIKEGKIKAWGMSEAGLSSIQKAHQICPLSALQSEYSLWWREPEKEILGFLEKEKIGFVAFSPLGKGFLGAKFEKNATFASEDFRSVSPRFNQENLAKNYILVELIQDHAHAKGVTPAQLALSWILHTQKIIVPLFGTTKESRLIENIGALQVSWSQKELEIFQKELTAIKIEGARYPERINKMVNQ
>NZ_CP032903.1|WP_139544925.1|322332_324411_+|elongation-factor-G
MARKTPLNRIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVENQIKQRLKANPVPINIPIGAEDTFIGVIDLVQMKAIVWNNETMGAKYDVEEIPSDLLEKAKQYREKLVEAVAEQDEALMEKYLGGEELNIEEIKKGIKTGCLNMNLIPMLCGSSFKNKGVQTLLDAVIDYLPAPTEVVDIKGIDPKTEEEVFVKSSDDGEFASLAFKIMTDPFVGQLTFVRVYRGKLESGSYVYNSTKDKKERVGRLLKMHSNKREDIKEVYAGEICAFVGLKDTLTGDTLCDEKNAVVLERMEFPEPVIHIAVEPKTKADQEKMGVALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEIGQPQVAFRETIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPGSGYEFVNEISGGVIPKEYIPAVDKGIQEAMQNGVLAGYPVVDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRAANPVLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVNAFVPLVEMFGYSTDLRSATQGRGTYSMEFDHYGEVPSNIAKEIVEKRKG
>NZ_CP032903.1|WP_001254357.1|321853_322321_+|30S-ribosomal-protein-S7
MRRRKAPVREVLGDPVYGNKVVTKFINKMMFDGKKSVAEKIIYKAFNKIEEKSGEKGIEVFEKALERVRPLVEVRSRRVGGATYQVPVEVRASRQQSLSIRWILEATRKRNERMMVDRLANELMDAASDKGAAFKKKEDVHKMAEANKAFAHYRW
>NZ_CP032903.1|WP_001142321.1|321430_321838_+|30S-ribosomal-protein-S12
MPTINQLIRKERKKVVKKTKSPALVECPQRRGVCTRVYTTTPKKPNSALRKVAKVRLTSKFEVISYIPGEGHNLQEHSIVLVRGGRVKDLPGVKYHIVRGALDTAGVNKRTVSRSKYGTKKAKATDKKATDNKKK
>NZ_CP032903.1|WP_139544924.1|312669_321342_+|DNA-directed-RNA-polymerase-subunit-beta/beta'
MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKEGKESGIEKVFKSIFPIQDEHNRITLEYAGCEFGKSKYTVREAMERGITYSIPFKIKVRLILWEKDTKSGEKNGIKDIKEQSIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLNKLIYTGQIIPDRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIPFASLDANQRMEFDLKDPQGKIILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHLAEPVMVGKEVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIHSFLADYESLKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELHSGLVKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIVLNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTGIEKIIARDSWGAIKANRAGVVEKIDSKNIYILGEGKEEAYIDAYSLQKNLRTNQNTSFNQVPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSEHITKDDVFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSTGMILVGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDARVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPKEEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNGVIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQILEMHLGLVGKEFGKQIARMLEDKTKDFAKELHAKMLEIANAINEKDPLTIHVLENCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIFGDDVDEDGAPKPIVIKEDDRPKDFSSFQLTLASPEKIHSWSYGEVKKPETINYRTLKPERDGLFCMKIFGPTKDYECLCGKYKKPRFKDIGTCEKCGVAITHSKVRRFRMGHIELATPVAHIWYVNSLPSRIGTLLGVKMKDLERVLYYEAYIVKEPGEAAYDNEGTKLVMKYDILNEEQYQNISRRYEDRGFVAQMGGEAIKDLLEEIDLITLLQSLKEEVKDTNSDAKKKKLIKRLKVVESFLNSGNRPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEIIVRNEKRMLQEAVDVLFDNGRSTNAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPNLKMDECGLPKNMALELFKPHLLSKLEERGYATTLKQAKRMIEQKSNEVWECLQEITEGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVPLSQEAIAECKVLMLSSMNILLPASGKAVAIPSQDMVLGLYYLSLEKSGVKGEHKLFSSVNEIITAIDTKELDIHAKIRVLDQGNIIATSAGRMIIKSILPDFIPTDLWNRPMKKKDIGVLVDYVHKVGGIGITATFLDNLKTLGFRYATKAGISISMEDIITPKDKQKMVEKAKVEVKKIQQQYDQGLLTDQERYNKIIDTWTEVNDRMSKEMMTAIAQDKEGFNSIYMMADSGARGSAAQIRQLSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHGARKGLADTALKTANAGYLTRKLIDVSQNVKVVSDDCGTHEGIEITDIAVGSELIEPLEERIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITIRTPVTCKAPKGVCAKCYGLNLGEGKMSYPGEAVGVVAAQSIGEPGTQLTLRTFHVGGTASRSQDEREIVASKEGFVRFYNLRTYTNKEGKNIIANRRNASILVVEPKIKAPFDGELRIETVYEEVVVSVKNGDQEAKFVLRRSDIVKPSELAGVGGKIERKVYLPYASGHKVHKGGSIADIIQEGWNVPNRIPYASELLVKDNDPIAQDVYAKEKGVIKYYVLEANHLERTHGIKKGDMVSEKGLFVVVADDNGREVARHYIARGSEILIDDNSEVRANSVITKPTTNTFKTIATWDPYNTPIIADFKGKVSFVDIIAGVTVAEKEDENTGITSLVVNDYIPSGYKPSLFLEGANGEEVRYFLEPKTSIAISDGSSVEQAEVLAKIPKATVKSRDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKPIRNKEHIIVTSKDGRSMDYFVDKGKQILVHADEFVHAGEAMTDGVISSHDILRISGEKELYKYIVSEVQQVYRRQGVSIADKHIEIIVSQMLRQVRILDSGDSKFIEGDLVSKKLFKEENARVIALKGEPAIAEPVLLGITRAAIGSDSIISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGTGMYKNKKIVLRALEDNSKF
>NZ_CP032903.1|WP_000220776.1|312484_312676_-|hypothetical-protein
MTYFKPLIKNFELFNALIQVSIAKGSLNFRTIHDKNTKNPPAILTTLGHTLTNKIMEQNHLPR
>NZ_CP032903.1|WP_001018228.1|312068_312446_+|50S-ribosomal-protein-L7/L12
MAISKEEVLEYIGSLSVLELSELVKMFEEKFGVSATPTVVAGAAVAGGAAAESEEKTEFNVILADSGAEKIKVIKVVREITGLGLKEAKDATEKTPHVLKEGVNKEEAETIKKKLEEVGAKVEVK
>NZ_CP032903.1|WP_139544923.1|311531_312026_+|50S-ribosomal-protein-L10
MQKQHQRQHKVELVANLKSQFDSAKALLICDYKGLSVRKLEALRNKARIQSIKVQVIKNTLAHIAMKEAGCADLDLKETNVFLWGDDQIALSKLVFDFQKEHKDHFVLKAGLFDKESVSVAHVEAVSKLPSKEELMGMLLSVWTAPARYFVTGLDNLRKAKEEN
>NZ_CP032903.1|WP_001085846.1|310718_311423_+|50S-ribosomal-protein-L1
MAKKVFKRLEKLFSKIQNDKAYGVEQGVEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIKNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIAKAVTNAKSGQVNFRVDKKGNVHAPIGKASFPEEKIKENMLELVKTINRLKPSSAKGKYIRNAALSLTMSPSVNLDAQELMDIK
>NZ_CP032903.1|WP_001085997.1|310248_310674_+|50S-ribosomal-protein-L11
MAKKVVGEIKLQIPAGKANPSPPVGPALGQRGVNIMEFCKAFNERTKDMGSFNIPVIITVYQDKSFTFITKKPPVTDLIKKASGVEKGSDNPLKNKIAKLTHKQVEEIAQLKMEDLNTSTMEAAKKIVMGSARSMGVEVVD
>NZ_CP032903.1|WP_139544927.1|326438_327488_-|lipopolysaccharide-heptosyltransferase-II
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAYFILVGPQITCELFKKDEKIESVFIDDTKKSFFRLLATHKLAQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLKKELDQKSVLPLKLAFNLPTHTPNTPKKIGFNPSASYGSTKRWPASYYAEVSAVLLEEGHEIYFFGAKEDTIVSEEILKLIKGSLKNPLLSHNAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCAPCKKRVCPLKNEKNHLCMRSITPLEVLQAAHTLLEKP
>NZ_CP032903.1|WP_139544928.1|327549_328878_+|histidine--tRNA-ligase
MITPKVLSGFKDRLPKDAIQKAQLLSKVSVVFQSFGFVPIETPHLEYAEVLLPDASSDIQKEIYRFKDHGDRDVVLRFDLTVPLARFVSLHHQTLGMPFKRYAIGNVFRGERAQKGRYREFTQCDFDFIGSESLVCDAEIIQVIIASLKALDLEDFCVSINHRKILNGICEYFGISQVNEVLRIVDKLEKIGLNGVEEELKKECDLNSNTIKELLEMVQIQQNDLSHAEFFEKIAYLKDYNENLKKGIQDLERLYQLLGDLQISQNLYKIDFSIARGLGYYTGIVYETTLNDMKSLGSVCSGGRYDHLTKNFSKENLQGVGASIGIDRLIVALSEMQLLDECSTQAKVLIACMHEEYFSYANRLAESLRQSGIFSEVYPEAQKIKKPFSYANHKGHEFVAIIGEEEFKSETLSLKNMHSGMQLNCLSFLKALEIIGENDEDL
>NZ_CP032903.1|WP_139545742.1|328864_329905_+|aspartate-semialdehyde-dehydrogenase
MKTYNVAIVGASGAVGQELIKGLENSSFPIKKFVPLASVRSAGKKIKAFNKDYEILETTHEVFEKEKIDIAFFSAGGSVSEEFAVSASKTALVVDNTSFFRLHKDVPLVVPEINAKEIFNAPLNIIANPNCSTIQMTQILNPLHLHFKIKSVIVSTYQAVSGAGNKGIESLKNELKTALEHLEKDPAIDLNQVLRAGAFPYPIAFNAIAHIDTFKENGYTKEELKMVHETHKIMGVDFPISATCVRVPVLRSHSESLSIAFEKEFDLKEVYEVLKNAPSVVVCDDPSHNLYPTPLKASHTDSVFIGRLRKDLFDKKTLHGFCVADQLRVGAATNALKIALHYIKNA
>NZ_CP032903.1|WP_139544929.1|330317_331367_+|DUF874-family-protein
MESVKTGKTNKVGKNTEMANAKANKEAHFKQANAITNIIRSIGGFFTKIVKKVRELIKKHPEKSSAALVVLTHAVCKRAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDVSEQIELEQEKKEAENARDRANKSGIELEQEKQKTINTQKDFIKYAEQNCQKNHGQFFIKKGGIKAGIGIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQELIAYLQKELESLPYSQKAIAKQVDFYKPSSIAYLELDPRDFNVAEEWQNENLKIRSKAQAKMLEMRHLKTDPQAHLPTSQSLLLVQKIFADINKEIKVVANTEKKAEKVGYGYSKRM
>NZ_CP032903.1|WP_139544930.1|331646_332831_+|DUF874-family-protein
MPVIRVLVMLATMMMKLVKTAKEKKVFKNVGMSIMGIAFWEAIKDSIKKQIKKSDWICGNVKTADDYLKTHPNSWFNSAIGVATITTMLMNVCFADDQSKKEVAQAQKEAENARDRANKSGIELEQEKQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVNKAEQNCQENHSQFFIKKLGIKGGIGIEVEAECKTPKPTKTNQTPIQPKHLPNSKQPRSQRGSKAQELIAYLQKELESLPYSQKAIAKQVDFYKPSSIAYLELDPRDFNVTEEWQKENLKIRSKAQAKMLEMRHLKTDPQAHLPTSQSLLFVQKIFADINKEIKVVANTEKKAEKVGYGYSKRM
>NZ_CP032903.1|WP_039088468.1|333053_333797_-|carbonic-anhydrase
MKKTFLIALALTASLIGAENTKWDYKNKENGPHRWDKLHKDFEVCKSGKSQSPINIEHYYHTQDKADLQFKYAASKPKAVFFTHHTLKASFEPTNHINYRGHDYVLDNVHFHAPMEFLINNKTRPLSAHFVHKDAKGRLLVLAIGFEEGKENPNLDPILEGIQKKQNFKEVALDAFLPKTINYYHFNGSLTAPPCTEGVAWFVIEEPLEVSAKQLAEIKKRMKNSPNQRPVQPDYNTVIIKSSAETR
>NZ_CP032903.1|WP_139544931.1|334068_335244_+|sugar-transporter
MMITKQSYQKFALMRVFVFSLSAFIFNTTEFVPVALLSDIAKSFEMESATVGLMITAYAWVVSLGSLPLMLLSVKIERKRLLLFLFALFIASHILSALAWDFWVLLLSRMGIAFAHSIFWSITASLVIRVAPRNKKQQALGLLALGSSLAMILGLPLGRIIGQILDWRSTFGVIGGVATLIMLLMWKLLPHLPSRNAGTLASVPILMKRPLLVGIYLLVIMVISGHFTTYSYIEPFIIQISQFSPDITTLMLFVFGLAGVAGSFLFGRLYAKNSRKFIAFAMVLVICPQLLLFVFKNLEWVIFLQIFLWGIGITSLTIALQMRVLQLAPDATDVASAIFSGSYNVGIGSGALFGSIVIHQLGLGYIGFVGGALGLLALFWLRFITIKFKKT
>NZ_CP032903.1|WP_139544932.1|335403_336783_+|HP1184-family-multidrug-efflux-MATE-transporter
MLKKKIDLHKDSIRKLFFYYFIPLAFSMISLSTYSMIDGMFVGKKLGKEAIAAVNIAWPIFPGLIAYELLFGFGAASIVGYFLGQNKTHRARLVFSSVFYFVAISAFILSMALLPFSETIARLFGSNDALLGMSKRYIEIILMGAIFMVLHPLADVFVVNDKRPILAMVAMLIGSLANIFFNYLFIFVLEVGVQGSAIATVIGHAIGVLVLMQHFWRKKGQLYFIKRFSLSSVISSAKSGVPQSTAEFSASIMILLFNTAIMHTAGERFVSMYGIVMYNAIIFFTTLFAISQGIQPIASFSYGARNLERVKAVFVFGLKAAFCIGVVFYGAYYFLDEFLIKLYLQPSEQDPLFMQETKRAMNIYYVGYVFLGMTLLCAVFFQSIQRAKSSFIITLSHTLGFIVILLPILSHFYGINGVWVTYPIAQFLAFLVALGVTYYEIKKGVFTTYKEKSPIALKT
>NZ_CP032903.1|WP_139544933.1|336808_337960_+|cation:proton-antiporter
MHAEFFTFALIMLLIVMAPYMSRISRLPITVVEILFGSVGAYVGFIEPTKGFEIMSEIGFLFLMFLCGLEVEIYLFKKLGVSLLKRIFAYLLILYTLSFILTFSLNLEPIFMVIFPIISLGMIMTLVKDYRKEILWLDLVLKVGVIGELLSIFGLVVVDGVYSHGLGMDLIKDLGILIVFLILIIVAFQIFKTLFWWFPHLKLFVMPKSSQFNQDVRFSLMLFFSLVAIVVWLKIEMVLGAFLAGLVVSTFFSHKSELIHKLNDVGFGFFVPLFFIHVGSTLDLKLVFLNPHLILQGILIVIAMLSLHLITSTLLWRKYFKEAKHLLSFALGASMPLTFLVTTAAVGLKAQAISQNTYYALLMAAIFEGVLFTIAIKILNKKA
>NZ_CP032903.1|WP_000312853.1|337969_338731_-|tRNA-2-thiocytidine(32)-synthetase-TtcA
MAYEISKKVLHIVGKTNATYKLIEEGDKILLGLSGGKDSIMLACILARMQKHAPFKFDFKAVTVHYGLGEDLKWLSDLCQEQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVESFFMNFTYNGSLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHFFDSLENAFNNVQANSFSDAKYLDA

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Crispr_ID: NZ_CP032903_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP032903_2

332142-332219

Orphan

Consensus_repeat	Method
AATCAAATAAAAGTAGAACAAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP032903_2

>merge|NZ_CP032903|2|332142-332219|CRISPRCasFinder
AATCAAATAAAAGTAGAACAAGAAAAGCAAAAGACAAGCAATATAGAGACTAACAATCAAATAAAAGTAGAACAGGAA

>NZ_CP032903|2|2|332142-332219|CRISPRCasFinder
AATCAAATAAAAGTAGAACAAGAA	AAGCAAAAGACAAGCAATATAGAGACTAAC
AATCAAATAAAAGTAGAACAGGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP032903.1\|WP_001254357.1\|321853_322321_+\|30S-ribosomal-protein-S7	unknown	unknown	gnl\|CDD\|235398
NZ_CP032903.1\|WP_139544937.1\|343748_344261_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|198383
NZ_CP032903.1\|WP_001142321.1\|321430_321838_+\|30S-ribosomal-protein-S12	unknown	unknown	gnl\|CDD\|235355
NZ_CP032903.1\|WP_127967432.1\|342898_343603_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|188024
NZ_CP032903.1\|WP_139544933.1\|336808_337960_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|223551
NZ_CP032903.1\|WP_000312853.1\|337969_338731_-\|tRNA-2-thiocytidine(32)-synthetase-TtcA	unknown	unknown	gnl\|CDD\|236737
NZ_CP032903.1\|WP_139544929.1\|330317_331367_+\|DUF874-family-protein	unknown	unknown	gnl\|CDD\|283549
NZ_CP032903.1\|WP_139544932.1\|335403_336783_+\|HP1184-family-multidrug-efflux-MATE-transporter	unknown	unknown	gnl\|CDD\|240548
NZ_CP032903.1\|WP_139544934.1\|338750_340082_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341025
NZ_CP032903.1\|WP_139544931.1\|334068_335244_+\|sugar-transporter	unknown	unknown	gnl\|CDD\|179591
NZ_CP032903.1\|WP_139544928.1\|327549_328878_+\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|223202
NZ_CP032903.1\|WP_039088468.1\|333053_333797_-\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|225875
NZ_CP032903.1\|WP_139544935.1\|340392_341649_+\|NupC/NupG-family-nucleoside-CNT-transporter	unknown	unknown	gnl\|CDD\|224883
NZ_CP032903.1\|WP_139544924.1\|312669_321342_+\|DNA-directed-RNA-polymerase-subunit-beta/beta'	unknown	unknown	gnl\|CDD\|181983
NZ_CP032903.1\|WP_139544927.1\|326438_327488_-\|lipopolysaccharide-heptosyltransferase-II	unknown	unknown	gnl\|CDD\|223928
NZ_CP032903.1\|WP_139545742.1\|328864_329905_+\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|273543
NZ_CP032903.1\|WP_139544936.1\|341660_342902_+\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
NZ_CP032903.1\|WP_139544926.1\|324930_325920_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381304
NZ_CP032903.1\|WP_139544925.1\|322332_324411_+\|elongation-factor-G	unknown	unknown	gnl\|CDD\|234569
NZ_CP032903.1\|WP_000220776.1\|312484_312676_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP032903.1\|WP_001254357.1\|321853_322321_+\|30S-ribosomal-protein-S7	gnl\|CDD\|235398	PRK05302, PRK05302, 30S ribosomal protein S7; Validated.	4.61403e-100
NZ_CP032903.1\|WP_139544937.1\|343748_344261_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|198383	cd10436, GIY-YIG_EndoII_Hpy188I_like, Catalytic GIY-YIG domain of coliphage T4 non-specific endonuclease II, type II restriction endonuclease R.Hpy188I, and similar proteins. This family includes two different GIY-YIG enzymes, coliphage T4 non-specific endonuclease II (EndoII), and type II restriction endonuclease R.Hpy188I. They display high sequence similarity to each other, and both of them contain an extra N-terminal hairpin that lacks counterparts in other GIY-YIG enzymes. EndoII encoded by gene denA catalyzes the initial step in degradation of host DNA, which permits scavenging of host-derived nucleotides for phage DNA synthesis. R.Hpy188I recognizes the unique sequence, 5'-TCNGA-3', and cleaves the DNA between nucleotides N and G in its recognition sequence to generate a single nucleotide 3'-overhang. EndoII binds to two DNA substrates as an X-shaped tetrameric structure composed as a dimer of dimers. In contrast, two subunits of R.Hpy188I form a dimer to embrace one bound DNA. Divalent metal-ion cofactors are required for their catalytic events, but not for the substrates binding.	5.64505e-17
NZ_CP032903.1\|WP_001142321.1\|321430_321838_+\|30S-ribosomal-protein-S12	gnl\|CDD\|235355	PRK05163, rpsL, 30S ribosomal protein S12; Validated.	1.80166e-84
NZ_CP032903.1\|WP_127967432.1\|342898_343603_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|188024	TIGR00107, Purine_nucleoside_phosphorylase_DeoD-type, purine-nucleoside phosphorylase, family 1 (deoD). Purine nucleoside phosphorylase (also called inosine phosphorylase) is a purine salvage enzyme. Purine nucleosides, such as guanosine, inosine, or xanthosine, plus orthophosphate, can be converted to their respective purine bases (guanine, hypoxanthine, or xanthine) plus ribose-1-phosphate. This family of purine nucleoside phosphorylase is restricted to the bacteria. [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides].	1.47737e-143
NZ_CP032903.1\|WP_139544933.1\|336808_337960_+\|cation:proton-antiporter	gnl\|CDD\|223551	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	1.02159e-35
NZ_CP032903.1\|WP_000312853.1\|337969_338731_-\|tRNA-2-thiocytidine(32)-synthetase-TtcA	gnl\|CDD\|236737	PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional.	1.11415e-68
NZ_CP032903.1\|WP_139544929.1\|330317_331367_+\|DUF874-family-protein	gnl\|CDD\|283549	pfam05917, DUF874, Helicobacter pylori protein of unknown function (DUF874). This family consists of several hypothetical proteins specific to Helicobacter pylori. The function of this family is unknown.	1.10447e-169
NZ_CP032903.1\|WP_139544932.1\|335403_336783_+\|HP1184-family-multidrug-efflux-MATE-transporter	gnl\|CDD\|240548	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump.	6.15553e-102
NZ_CP032903.1\|WP_139544934.1\|338750_340082_-\|MFS-transporter	gnl\|CDD\|341025	cd17472, MFS_YajR_like, Escherichia coli inner membrane transport protein YajR and similar multidrug-efflux transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli inner membrane transport protein YajR and some uncharacterized multidrug-efflux transporters. YajR is a putative proton-driven major facilitator superfamily (MFS) transporter found in many gram-negative bacteria. Unlike most MFS transporters, YajR contains a C-terminal, cytosolic YAM domain, which may play an essential role for the proper functioning of the transporter. YajR-like transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.20187e-123
NZ_CP032903.1\|WP_139544931.1\|334068_335244_+\|sugar-transporter	gnl\|CDD\|179591	PRK03545, PRK03545, putative arabinose transporter; Provisional.	0
NZ_CP032903.1\|WP_139544928.1\|327549_328878_+\|histidine--tRNA-ligase	gnl\|CDD\|223202	COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].	6.84707e-163
NZ_CP032903.1\|WP_039088468.1\|333053_333797_-\|carbonic-anhydrase	gnl\|CDD\|225875	COG3338, Cah, Carbonic anhydrase [Inorganic ion transport and metabolism].	3.13732e-125
NZ_CP032903.1\|WP_139544935.1\|340392_341649_+\|NupC/NupG-family-nucleoside-CNT-transporter	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	1.49393e-174
NZ_CP032903.1\|WP_139544924.1\|312669_321342_+\|DNA-directed-RNA-polymerase-subunit-beta/beta'	gnl\|CDD\|181983	PRK09603, PRK09603, DNA-directed RNA polymerase subunit beta/beta'.	0
NZ_CP032903.1\|WP_139544927.1\|326438_327488_-\|lipopolysaccharide-heptosyltransferase-II	gnl\|CDD\|223928	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].	1.71137e-88
NZ_CP032903.1\|WP_139545742.1\|328864_329905_+\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|273543	TIGR01296, Aspartate-semialdehyde_dehydrogenase, aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. [Amino acid biosynthesis, Aspartate family].	0
NZ_CP032903.1\|WP_139544936.1\|341660_342902_+\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
NZ_CP032903.1\|WP_139544926.1\|324930_325920_-\|aldo/keto-reductase	gnl\|CDD\|381304	cd19078, AKR_AKR13C1_2, AKR13C family of aldo-keto reductase (AKR). The AKR13C family includes Helicobacter pyroli aldehyde reductase (AKR13C1) and Thermotoga maritima aldo-keto reductase (AKR13C2). Aldehyde reductase (EC 1.1.1.21), also called aldose reductase, is a cytosolic NADPH-dependent oxidoreductase that catalyzes the reduction of a variety of aldehydes and carbonyls, including monosaccharides.	2.38985e-180
NZ_CP032903.1\|WP_139544925.1\|322332_324411_+\|elongation-factor-G	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	0

>NZ_CP032903.1|WP_139544929.1|330317_331367_+|DUF874-family-protein
MESVKTGKTNKVGKNTEMANAKANKEAHFKQANAITNIIRSIGGFFTKIVKKVRELIKKHPEKSSAALVVLTHAVCKRAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSVGDVSEQIELEQEKKEAENARDRANKSGIELEQEKQKTINTQKDFIKYAEQNCQKNHGQFFIKKGGIKAGIGIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQELIAYLQKELESLPYSQKAIAKQVDFYKPSSIAYLELDPRDFNVAEEWQNENLKIRSKAQAKMLEMRHLKTDPQAHLPTSQSLLLVQKIFADINKEIKVVANTEKKAEKVGYGYSKRM
>NZ_CP032903.1|WP_139545742.1|328864_329905_+|aspartate-semialdehyde-dehydrogenase
MKTYNVAIVGASGAVGQELIKGLENSSFPIKKFVPLASVRSAGKKIKAFNKDYEILETTHEVFEKEKIDIAFFSAGGSVSEEFAVSASKTALVVDNTSFFRLHKDVPLVVPEINAKEIFNAPLNIIANPNCSTIQMTQILNPLHLHFKIKSVIVSTYQAVSGAGNKGIESLKNELKTALEHLEKDPAIDLNQVLRAGAFPYPIAFNAIAHIDTFKENGYTKEELKMVHETHKIMGVDFPISATCVRVPVLRSHSESLSIAFEKEFDLKEVYEVLKNAPSVVVCDDPSHNLYPTPLKASHTDSVFIGRLRKDLFDKKTLHGFCVADQLRVGAATNALKIALHYIKNA
>NZ_CP032903.1|WP_139544928.1|327549_328878_+|histidine--tRNA-ligase
MITPKVLSGFKDRLPKDAIQKAQLLSKVSVVFQSFGFVPIETPHLEYAEVLLPDASSDIQKEIYRFKDHGDRDVVLRFDLTVPLARFVSLHHQTLGMPFKRYAIGNVFRGERAQKGRYREFTQCDFDFIGSESLVCDAEIIQVIIASLKALDLEDFCVSINHRKILNGICEYFGISQVNEVLRIVDKLEKIGLNGVEEELKKECDLNSNTIKELLEMVQIQQNDLSHAEFFEKIAYLKDYNENLKKGIQDLERLYQLLGDLQISQNLYKIDFSIARGLGYYTGIVYETTLNDMKSLGSVCSGGRYDHLTKNFSKENLQGVGASIGIDRLIVALSEMQLLDECSTQAKVLIACMHEEYFSYANRLAESLRQSGIFSEVYPEAQKIKKPFSYANHKGHEFVAIIGEEEFKSETLSLKNMHSGMQLNCLSFLKALEIIGENDEDL
>NZ_CP032903.1|WP_139544927.1|326438_327488_-|lipopolysaccharide-heptosyltransferase-II
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAYFILVGPQITCELFKKDEKIESVFIDDTKKSFFRLLATHKLAQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLKKELDQKSVLPLKLAFNLPTHTPNTPKKIGFNPSASYGSTKRWPASYYAEVSAVLLEEGHEIYFFGAKEDTIVSEEILKLIKGSLKNPLLSHNAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCAPCKKRVCPLKNEKNHLCMRSITPLEVLQAAHTLLEKP
>NZ_CP032903.1|WP_139544926.1|324930_325920_-|aldo/keto-reductase
MQQRHLGPLKVGALALGCMGMTYGYEEVHDKKQMVKLIHKALELGINFFDTAEAYGEDNEKLLGEAIKPFKDKVVVASKFGIYYADPNDKYATMFLDSSPNRIKSAIEGSLKRLKVECIDLYYQHRMDTNTPIEEVAGVMQALIKEGKIKAWGMSEAGLSSIQKAHQICPLSALQSEYSLWWREPEKEILGFLEKEKIGFVAFSPLGKGFLGAKFEKNATFASEDFRSVSPRFNQENLAKNYILVELIQDHAHAKGVTPAQLALSWILHTQKIIVPLFGTTKESRLIENIGALQVSWSQKELEIFQKELTAIKIEGARYPERINKMVNQ
>NZ_CP032903.1|WP_139544925.1|322332_324411_+|elongation-factor-G
MARKTPLNRIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVENQIKQRLKANPVPINIPIGAEDTFIGVIDLVQMKAIVWNNETMGAKYDVEEIPSDLLEKAKQYREKLVEAVAEQDEALMEKYLGGEELNIEEIKKGIKTGCLNMNLIPMLCGSSFKNKGVQTLLDAVIDYLPAPTEVVDIKGIDPKTEEEVFVKSSDDGEFASLAFKIMTDPFVGQLTFVRVYRGKLESGSYVYNSTKDKKERVGRLLKMHSNKREDIKEVYAGEICAFVGLKDTLTGDTLCDEKNAVVLERMEFPEPVIHIAVEPKTKADQEKMGVALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEIGQPQVAFRETIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPGSGYEFVNEISGGVIPKEYIPAVDKGIQEAMQNGVLAGYPVVDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRAANPVLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVNAFVPLVEMFGYSTDLRSATQGRGTYSMEFDHYGEVPSNIAKEIVEKRKG
>NZ_CP032903.1|WP_001254357.1|321853_322321_+|30S-ribosomal-protein-S7
MRRRKAPVREVLGDPVYGNKVVTKFINKMMFDGKKSVAEKIIYKAFNKIEEKSGEKGIEVFEKALERVRPLVEVRSRRVGGATYQVPVEVRASRQQSLSIRWILEATRKRNERMMVDRLANELMDAASDKGAAFKKKEDVHKMAEANKAFAHYRW
>NZ_CP032903.1|WP_001142321.1|321430_321838_+|30S-ribosomal-protein-S12
MPTINQLIRKERKKVVKKTKSPALVECPQRRGVCTRVYTTTPKKPNSALRKVAKVRLTSKFEVISYIPGEGHNLQEHSIVLVRGGRVKDLPGVKYHIVRGALDTAGVNKRTVSRSKYGTKKAKATDKKATDNKKK
>NZ_CP032903.1|WP_139544924.1|312669_321342_+|DNA-directed-RNA-polymerase-subunit-beta/beta'
MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKEGKESGIEKVFKSIFPIQDEHNRITLEYAGCEFGKSKYTVREAMERGITYSIPFKIKVRLILWEKDTKSGEKNGIKDIKEQSIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLNKLIYTGQIIPDRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIPFASLDANQRMEFDLKDPQGKIILLAGKKLTSRKIKELKENHLEWVEYPMDILLNRHLAEPVMVGKEVLLDMLTQLDKNKLEKIHDLGVQEFVIINDLALGHDASIIHSFLADYESLKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELHSGLVKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIVLNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTGIEKIIARDSWGAIKANRAGVVEKIDSKNIYILGEGKEEAYIDAYSLQKNLRTNQNTSFNQVPIVKVGDKVEAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSEHITKDDVFTSTHIYEKEVDARELKHGVEEFTADIPDVKEEALAHLDESGIVKVGTYVSTGMILVGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDARVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPKEEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNGVIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQILEMHLGLVGKEFGKQIARMLEDKTKDFAKELHAKMLEIANAINEKDPLTIHVLENCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIFGDDVDEDGAPKPIVIKEDDRPKDFSSFQLTLASPEKIHSWSYGEVKKPETINYRTLKPERDGLFCMKIFGPTKDYECLCGKYKKPRFKDIGTCEKCGVAITHSKVRRFRMGHIELATPVAHIWYVNSLPSRIGTLLGVKMKDLERVLYYEAYIVKEPGEAAYDNEGTKLVMKYDILNEEQYQNISRRYEDRGFVAQMGGEAIKDLLEEIDLITLLQSLKEEVKDTNSDAKKKKLIKRLKVVESFLNSGNRPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEIIVRNEKRMLQEAVDVLFDNGRSTNAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPNLKMDECGLPKNMALELFKPHLLSKLEERGYATTLKQAKRMIEQKSNEVWECLQEITEGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVPLSQEAIAECKVLMLSSMNILLPASGKAVAIPSQDMVLGLYYLSLEKSGVKGEHKLFSSVNEIITAIDTKELDIHAKIRVLDQGNIIATSAGRMIIKSILPDFIPTDLWNRPMKKKDIGVLVDYVHKVGGIGITATFLDNLKTLGFRYATKAGISISMEDIITPKDKQKMVEKAKVEVKKIQQQYDQGLLTDQERYNKIIDTWTEVNDRMSKEMMTAIAQDKEGFNSIYMMADSGARGSAAQIRQLSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHGARKGLADTALKTANAGYLTRKLIDVSQNVKVVSDDCGTHEGIEITDIAVGSELIEPLEERIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITIRTPVTCKAPKGVCAKCYGLNLGEGKMSYPGEAVGVVAAQSIGEPGTQLTLRTFHVGGTASRSQDEREIVASKEGFVRFYNLRTYTNKEGKNIIANRRNASILVVEPKIKAPFDGELRIETVYEEVVVSVKNGDQEAKFVLRRSDIVKPSELAGVGGKIERKVYLPYASGHKVHKGGSIADIIQEGWNVPNRIPYASELLVKDNDPIAQDVYAKEKGVIKYYVLEANHLERTHGIKKGDMVSEKGLFVVVADDNGREVARHYIARGSEILIDDNSEVRANSVITKPTTNTFKTIATWDPYNTPIIADFKGKVSFVDIIAGVTVAEKEDENTGITSLVVNDYIPSGYKPSLFLEGANGEEVRYFLEPKTSIAISDGSSVEQAEVLAKIPKATVKSRDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKPIRNKEHIIVTSKDGRSMDYFVDKGKQILVHADEFVHAGEAMTDGVISSHDILRISGEKELYKYIVSEVQQVYRRQGVSIADKHIEIIVSQMLRQVRILDSGDSKFIEGDLVSKKLFKEENARVIALKGEPAIAEPVLLGITRAAIGSDSIISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGTGMYKNKKIVLRALEDNSKF
>NZ_CP032903.1|WP_000220776.1|312484_312676_-|hypothetical-protein
MTYFKPLIKNFELFNALIQVSIAKGSLNFRTIHDKNTKNPPAILTTLGHTLTNKIMEQNHLPR
>NZ_CP032903.1|WP_039088468.1|333053_333797_-|carbonic-anhydrase
MKKTFLIALALTASLIGAENTKWDYKNKENGPHRWDKLHKDFEVCKSGKSQSPINIEHYYHTQDKADLQFKYAASKPKAVFFTHHTLKASFEPTNHINYRGHDYVLDNVHFHAPMEFLINNKTRPLSAHFVHKDAKGRLLVLAIGFEEGKENPNLDPILEGIQKKQNFKEVALDAFLPKTINYYHFNGSLTAPPCTEGVAWFVIEEPLEVSAKQLAEIKKRMKNSPNQRPVQPDYNTVIIKSSAETR
>NZ_CP032903.1|WP_139544931.1|334068_335244_+|sugar-transporter
MMITKQSYQKFALMRVFVFSLSAFIFNTTEFVPVALLSDIAKSFEMESATVGLMITAYAWVVSLGSLPLMLLSVKIERKRLLLFLFALFIASHILSALAWDFWVLLLSRMGIAFAHSIFWSITASLVIRVAPRNKKQQALGLLALGSSLAMILGLPLGRIIGQILDWRSTFGVIGGVATLIMLLMWKLLPHLPSRNAGTLASVPILMKRPLLVGIYLLVIMVISGHFTTYSYIEPFIIQISQFSPDITTLMLFVFGLAGVAGSFLFGRLYAKNSRKFIAFAMVLVICPQLLLFVFKNLEWVIFLQIFLWGIGITSLTIALQMRVLQLAPDATDVASAIFSGSYNVGIGSGALFGSIVIHQLGLGYIGFVGGALGLLALFWLRFITIKFKKT
>NZ_CP032903.1|WP_139544932.1|335403_336783_+|HP1184-family-multidrug-efflux-MATE-transporter
MLKKKIDLHKDSIRKLFFYYFIPLAFSMISLSTYSMIDGMFVGKKLGKEAIAAVNIAWPIFPGLIAYELLFGFGAASIVGYFLGQNKTHRARLVFSSVFYFVAISAFILSMALLPFSETIARLFGSNDALLGMSKRYIEIILMGAIFMVLHPLADVFVVNDKRPILAMVAMLIGSLANIFFNYLFIFVLEVGVQGSAIATVIGHAIGVLVLMQHFWRKKGQLYFIKRFSLSSVISSAKSGVPQSTAEFSASIMILLFNTAIMHTAGERFVSMYGIVMYNAIIFFTTLFAISQGIQPIASFSYGARNLERVKAVFVFGLKAAFCIGVVFYGAYYFLDEFLIKLYLQPSEQDPLFMQETKRAMNIYYVGYVFLGMTLLCAVFFQSIQRAKSSFIITLSHTLGFIVILLPILSHFYGINGVWVTYPIAQFLAFLVALGVTYYEIKKGVFTTYKEKSPIALKT
>NZ_CP032903.1|WP_139544933.1|336808_337960_+|cation:proton-antiporter
MHAEFFTFALIMLLIVMAPYMSRISRLPITVVEILFGSVGAYVGFIEPTKGFEIMSEIGFLFLMFLCGLEVEIYLFKKLGVSLLKRIFAYLLILYTLSFILTFSLNLEPIFMVIFPIISLGMIMTLVKDYRKEILWLDLVLKVGVIGELLSIFGLVVVDGVYSHGLGMDLIKDLGILIVFLILIIVAFQIFKTLFWWFPHLKLFVMPKSSQFNQDVRFSLMLFFSLVAIVVWLKIEMVLGAFLAGLVVSTFFSHKSELIHKLNDVGFGFFVPLFFIHVGSTLDLKLVFLNPHLILQGILIVIAMLSLHLITSTLLWRKYFKEAKHLLSFALGASMPLTFLVTTAAVGLKAQAISQNTYYALLMAAIFEGVLFTIAIKILNKKA
>NZ_CP032903.1|WP_000312853.1|337969_338731_-|tRNA-2-thiocytidine(32)-synthetase-TtcA
MAYEISKKVLHIVGKTNATYKLIEEGDKILLGLSGGKDSIMLACILARMQKHAPFKFDFKAVTVHYGLGEDLKWLSDLCQEQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVESFFMNFTYNGSLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNCPAKQPTSDKPPIARLATKNFLKEMQNLHPHFFDSLENAFNNVQANSFSDAKYLDA
>NZ_CP032903.1|WP_139544934.1|338750_340082_-|MFS-transporter
MFKKIFPLALVSSLRFLGLFIVLPVISLYADSFHSSSPLLVGLAVGGAYLTQIVFQTPMGILSDKIGRKVVVIVCLLLFLAGSLVCFIANDIVWLVIGRFIQGMGALGGVISAMVADEVKEEERTKAMAIMGAFIFISFTISMAIGPGVVAFFGGAKWLFLLTAILTLLSLLMLLKVKDAPKISYQIKNIKAYQPNSKALYLLYLSSFFEKAFMTLIFVLIPLALVNEFYKDESFLILVYVPGALLGVLSMGIASVMAEKYNKPKGVMLSGVLLFVVSYLCLFLADSSFLGKYLWLFILGVAFFFIGFATLEPIMQSLASKFARVHEKGKVLGQFTTFGYLGSFVGGVSGGLSYHHLGVSNTSLIIVALGLIWGLSLFLLNNPSKQKNVYFPLDAYNEEQFETLGDKIIEWYVNISEEIIIVKYNSDHISEEEIIHLARNFRK
>NZ_CP032903.1|WP_139544935.1|340392_341649_+|NupC/NupG-family-nucleoside-CNT-transporter
MIFSSLFSVVGMAVLFLIAWVFSSNKRAINYRTIVSAFVIQVALGALALYVPLGREMLQGLASGIQSVISYGYEGVRFLFGSLAPNAKGDQGIGGFVFAINVLAIIIFFASLISLLYYLKIMPLFINLIGGALQKCLGTSKAESMSAAANIFVAHTEAPLVIKPYLKSMSDSEIFAVMCVGMASVAGPVLAGYASMGIPLPYLIAASFMSAPGGLLFAKIIYPQNETISSHADVSAEKHVNAIEAIANGASTGLNLALHVGAMLLAFVGMLALINGLLGVVGGFLGMEHLSLGLILGTLLKPLAFMLGIPWSQAGIAGEIIGIKIALNEFVGYMQFLPYLGDNPPLVLSEKTKAIITFALCGFANLSSVAMLIGGLGSLVPKKKDFIARLALKAVLVGTLSNFMSATIAGLFIGLNAH
>NZ_CP032903.1|WP_139544936.1|341660_342902_+|phosphopentomutase
MQKRVVILLLDSFGIGASEDAKDFGDLGANTLGNIAKACFNNLADSNDRNGALKLPYLESLGLGLSALKAANELPLGFQPQPNLIGAYTYAQELSSAKDTISGHWEMMGAPVLFEWGYFKDKNDSFPKEILDEIMHKTKIKGYLGNCHASGTEIIKDLGEKHLETLYPIFYTSADSVFQIAAHEEKFGLDNLYALCEEAFQILEPLKIARVIARPFIGTNREDFKRTAKRKDYAIKPHKKLLFEKFIEEKQGEVISIGKIADIYAHVGITQKFKAGSLMELCDVTLERVKNAKNNSLIFTNFVHFDSDYGHRRDISGYANALEYFDTRLKEVLDNLKENDLLILCADHGCDPSFKGTDHTREYIPVLFYHKDLQPTFLGKSESFADIGQSIAYFLGLSPLDYGKNLLNFKGQP
>NZ_CP032903.1|WP_127967432.1|342898_343603_+|purine-nucleoside-phosphorylase
MTPHINAKIGDFYPQCLLCGDPLRVSYIAKKFLQDAKEITNVRNMLGFSGKYKGKGISLMGHGMGIASCTIYVTELIKTYQVKELLRIGTCGAISPKVGLKDIIMATGASTDSKTNRVRFLNHDLSATPDFELSLRAYQTAKRLGIDLKVGNIFSSDFFYSFETHAFDLMAQYNHLAIEMEAAGLYATAMELNAKALCLCSVSDHLITKEALSPKERIESFDNMIILALEMMTQ
>NZ_CP032903.1|WP_139544937.1|343748_344261_-|GIY-YIG-nuclease-family-protein
MAKRKSDIILKSVNDLKDEIDYKDFEYKEYFNLLCELVPNNSLEKLEINAIDEKNMKNEGLVYVFVIQGKIFKVGHSITPITKRVQSYNCGKVEYRKNGTCSTTNYFVLQSLLKINKIVQVYAFFPEQPTYTLFGKTYQDSFSTSKRAENVILENFIKNHNKKPIGCTQT

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1501898 : 1556305

Catovirus(20.0%)

protease,transposase,integrase

attL 1517693:1517714|attR 1556281:1556302

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_139545624.1\|1501898_1502687_-\|integrase	integrase	NA	NA	NA	NA
WP_139545625.1\|1502664_1503120_-	hypothetical protein	NA	NA	NA	NA
WP_139545626.1\|1503119_1504505_-	hypothetical protein	NA	NA	NA	NA
WP_139545627.1\|1504508_1506686_-	competence protein	NA	NA	NA	NA
WP_139545628.1\|1506729_1508124_-	hypothetical protein	NA	NA	NA	NA
1517693:1517714	attL	NA	NA	NA	NA
WP_000462384.1\|1518097_1518307_+	hypothetical protein	NA	NA	NA	NA
WP_139545629.1\|1518303_1518555_+	hypothetical protein	NA	NA	NA	NA
WP_139545770.1\|1518686_1519007_+	hypothetical protein	NA	NA	NA	NA
WP_139545630.1\|1519019_1521080_+	type IA DNA topoisomerase	A0A1V0SB35	Catovirus	7.1e-59	29.1
WP_052918319.1\|1521119_1521605_+	hypothetical protein	NA	NA	NA	NA
WP_000377503.1\|1521574_1522378_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_025454908.1\|1522451_1523117_-	hypothetical protein	NA	NA	NA	NA
WP_139545771.1\|1523094_1523472_-	hypothetical protein	NA	NA	NA	NA
WP_139545631.1\|1523518_1524187_-	AAA family ATPase	A0A222YXS3	Escherichia_phage	7.7e-23	32.6
WP_139545632.1\|1524988_1526113_+	DUF1738 domain-containing protein	NA	NA	NA	NA
WP_139545633.1\|1526112_1527906_+	hypothetical protein	NA	NA	NA	NA
WP_139545634.1\|1527915_1529349_+	hypothetical protein	NA	NA	NA	NA
WP_139545635.1\|1529345_1530608_+	P-type conjugative transfer protein TrbL	NA	NA	NA	NA
WP_139545636.1\|1530604_1531315_+	hypothetical protein	NA	NA	NA	NA
WP_139545637.1\|1531307_1531883_+	hypothetical protein	NA	NA	NA	NA
WP_127983487.1\|1531887_1532901_-	hypothetical protein	NA	NA	NA	NA
WP_139545638.1\|1533080_1533494_+\|protease	CAAX protease	NA	NA	NA	NA
WP_000006537.1\|1533893_1534145_+	hypothetical protein	NA	NA	NA	NA
WP_139545639.1\|1534116_1534920_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_139545640.1\|1535236_1536304_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	1.0e-08	26.7
WP_139545772.1\|1537458_1539258_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_139545773.1\|1540643_1541138_+	hypothetical protein	NA	NA	NA	NA
WP_139545774.1\|1541200_1542277_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_139545641.1\|1542528_1542930_-	hypothetical protein	NA	NA	NA	NA
WP_139545642.1\|1542939_1543200_-	type VII secretion protein	NA	NA	NA	NA
WP_139545643.1\|1543215_1543785_-	hypothetical protein	NA	NA	NA	NA
WP_139545644.1\|1543781_1544549_-	dihydrolipoamide acetyltransferase	NA	NA	NA	NA
WP_139545645.1\|1546245_1547187_-	hypothetical protein	NA	NA	NA	NA
WP_139545775.1\|1547570_1547957_-	hypothetical protein	NA	NA	NA	NA
WP_139545646.1\|1548254_1548464_-	hypothetical protein	NA	NA	NA	NA
WP_139545647.1\|1548785_1552343_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_139545648.1\|1552369_1553860_+	sodium/proline symporter PutP	NA	NA	NA	NA
WP_139545649.1\|1554456_1555686_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	G3MB42	Bacillus_virus	1.4e-70	39.8
WP_139545516.1\|1555672_1556305_-\|transposase	IS607 family transposase	A0A1V0SJI5	Klosneuvirus	9.5e-39	45.5
1556281:1556302	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP032903

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection