CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP032908	Helicobacter pylori strain 23-A-EK1 chromosome, complete genome	4 crisprs	DEDDh,cas3	2	2	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP032908_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP032908_1

757724-757874

Orphan

Consensus_repeat	Method
TTCCCTTTGAAAAGGCATGATAAAGTTGAAGATCTCAGTAAGGTAGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP032908_1

>merge|NZ_CP032908|1|757724-757874|CRISPRCasFinder
TTCCCTTTGAAAAGGCATGATAAAGTTGAAGATCTCAGTAAGGTAGGGCGATCGGTTAGCCCTGAACCCATTTATGCTACGATTGATGATCTCGGCGGACCTTTCCCTTTGAAAAGGCATGATAAAGTTGATGATCTCAGTAAGGTAGGGC

>NZ_CP032908|1|1|757724-757874|CRISPRCasFinder
TTCCCTTTGAAAAGGCATGATAAAGTTGAAGATCTCAGTAAGGTAGGGC	GATCGGTTAGCCCTGAACCCATTTATGCTACGATTGATGATCTCGGCGGACCT
TTCCCTTTGAAAAGGCATGATAAAGTTGATGATCTCAGTAAGGTAGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP032908.1\|WP_001004709.1\|759690_761007_-\|transcription-termination-factor-Rho	unknown	unknown	gnl\|CDD\|236490
NZ_CP032908.1\|WP_021177319.1\|747728_748841_-\|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagH	unknown	unknown	unknown
NZ_CP032908.1\|WP_139534548.1\|745862_746576_-\|cag-pathogenicity-island-type-IV-secretion-system-associated-adhesin-CagL	unknown	unknown	unknown
NZ_CP032908.1\|WP_139534546.1\|744860_745781_+\|cag-pathogenicity-island-type-IV-secretion-system-protein-CagN	unknown	unknown	unknown
NZ_CP032908.1\|WP_000715278.1\|761271_761475_+\|50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|376487
NZ_CP032908.1\|WP_000428891.1\|754224_754452_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032908.1\|WP_139534553.1\|750148_753100_-\|cag-pathogenicity-island-type-IV-secretion-system-ATPase-CagE	unknown	unknown	gnl\|CDD\|273346
NZ_CP032908.1\|WP_127921559.1\|764927_765365_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032908.1\|WP_139534555.1\|753108_753732_-\|cag-pathogenicity-island-type-IV-secretion-system-protein-CagD	unknown	unknown	gnl\|CDD\|293175
NZ_CP032908.1\|WP_000855883.1\|748857_749286_-\|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagG	unknown	unknown	unknown
NZ_CP032908.1\|WP_139534556.1\|753733_754081_-\|cag-pathogenicity-island-type-IV-secretion-system-protein-CagC	unknown	unknown	gnl\|CDD\|374896
NZ_CP032908.1\|WP_139534566.1\|763071_764037_+\|sialidase	unknown	unknown	unknown
NZ_CP032908.1\|WP_000312020.1\|765838_766777_-\|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha	unknown	unknown	gnl\|CDD\|273113
NZ_CP032908.1\|WP_139534567.1\|764033_764855_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032908.1\|WP_139534564.1\|762375_763059_+\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl\|CDD\|129290
NZ_CP032908.1\|WP_139534551.1\|749340_750147_-\|type-IV-secretion-system-chaperone-CagF	unknown	unknown	unknown
NZ_CP032908.1\|WP_033601483.1\|766799_768038_-\|beta-ketoacyl-ACP-synthase-II	unknown	unknown	gnl\|CDD\|236265
NZ_CP032908.1\|WP_139534560.1\|758884_759652_-\|glutamate-racemase	unknown	unknown	gnl\|CDD\|272885
NZ_CP032908.1\|WP_139534550.1\|746572_747718_-\|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagI	unknown	unknown	unknown
NZ_CP032908.1\|WP_139534562.1\|761499_762363_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223390

Protein	Function_ID	Function_description	E-value
NZ_CP032908.1\|WP_000312020.1\|765838_766777_-\|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha	gnl\|CDD\|273113	TIGR00513, accA, acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. [Fatty acid and phospholipid metabolism, Biosynthesis].	0
NZ_CP032908.1\|WP_139534555.1\|753108_753732_-\|cag-pathogenicity-island-type-IV-secretion-system-protein-CagD	gnl\|CDD\|293175	pfam16567, CagD, Pathogenicity island component CagD. CagD is a tightly conserved family of proteins found in the pathogenic strains of Helicobacter species. It is one of some 30 proteins, produced from the genomic insert termed the pathogenicity island, required for the type IV secretion system - T4SS - that delivers CagA oncoprotein toxin into the host cell. CagD is a covalent dimer in which each monomer folds as a single domain composed of five beta-strands and three alpha-helices. CagD partially associates with the inner membrane, where it may be exposed to the periplasmic space; this may indicate that CagD is released into the supernatant during host cell infection in order then to bind to the host cell surface, or to be incorporated into the pilus structure.	2.5143e-121
NZ_CP032908.1\|WP_000715278.1\|761271_761475_+\|50S-ribosomal-protein-L31	gnl\|CDD\|376487	pfam01197, Ribosomal_L31, Ribosomal protein L31.	1.40477e-32
NZ_CP032908.1\|WP_139534564.1\|762375_763059_+\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl\|CDD\|129290	TIGR00186, Uncharacterized_tRNA/rRNA_methyltransferase_MG252, rRNA methylase, putative, group 3. this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification].	3.7982e-89
NZ_CP032908.1\|WP_139534553.1\|750148_753100_-\|cag-pathogenicity-island-type-IV-secretion-system-ATPase-CagE	gnl\|CDD\|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	0
NZ_CP032908.1\|WP_033601483.1\|766799_768038_-\|beta-ketoacyl-ACP-synthase-II	gnl\|CDD\|236265	PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed.	0
NZ_CP032908.1\|WP_139534560.1\|758884_759652_-\|glutamate-racemase	gnl\|CDD\|272885	TIGR00067, Glutamate_racemase, glutamate racemase. This family consists of glutamate racemase, a protein required for making the UDP-N-acetylmuramoyl-pentapeptide used as a precursor in bacterial peptidoglycan biosynthesis. The most closely related proteins differing in function are aspartate racemases. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	3.05032e-124
NZ_CP032908.1\|WP_001004709.1\|759690_761007_-\|transcription-termination-factor-Rho	gnl\|CDD\|236490	PRK09376, rho, transcription termination factor Rho; Provisional.	0
NZ_CP032908.1\|WP_139534562.1\|761499_762363_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	2.22914e-113
NZ_CP032908.1\|WP_139534556.1\|753733_754081_-\|cag-pathogenicity-island-type-IV-secretion-system-protein-CagC	gnl\|CDD\|374896	pfam16943, T4SS_CagC, Cag pathogenicity island, type IV secretory system. T4SS_CagC is a family of putative pathogenicity island, type IV, conjugal DNA-protein transfer, secretory system proteins from Gram-negative bacteria.	1.46608e-33

>NZ_CP032908.1|WP_000428891.1|754224_754452_-|hypothetical-protein
MENKSIGQIFKESLKKSFFSGLWGCLKWSFILTLISLGLFLLVFRFQPETIKKYIKDPKDLQFYNDLRKKNGWDK
>NZ_CP032908.1|WP_139534556.1|753733_754081_-|cag-pathogenicity-island-type-IV-secretion-system-protein-CagC
MKFFTRITDSYKKVVVTLGLVITTNPLMAVTSPTTGITETKSLVIQIISVLAIVGGCALGVKGIADIWKISDDIKRGQATVFAYAQPIAMLAVAGGIIYLSTKFGFNIGESGGAS
>NZ_CP032908.1|WP_139534555.1|753108_753732_-|cag-pathogenicity-island-type-IV-secretion-system-protein-CagD
MINNNSNKKLRGFFLKVLLSLVVFVSYGSANDDKEAKKEVQEKEKNTPDGRVYTNLDFDSFKATIKNLKDKKVTFKEVNPDIIKDEVFDFVIVNRVLKKIKDLKHYDPIIEKIFDEKGKEMGLNVELQINPEVKDFFTFKSISTTNKQRCFLSLRGETREILCDDKLYNVLLAVFNSYDPNDLLKHISTVESLKKIFYTITCEAVYL
>NZ_CP032908.1|WP_139534553.1|750148_753100_-|cag-pathogenicity-island-type-IV-secretion-system-ATPase-CagE
MFVASKQADEQKKLIIEQEVQKRQFQKIEELKADMQKGVNPFFKVLFDGGNRLFGFPETFIYSSIFILFVTIVLSVILFQAYELVLIVTIVIVLVALGFKKDYRLYQRMERAMKFKKPFLFKGVKNKAFMSIFSMKPSKEMANDIHLNPNREDRLVSAANSYLANNYECFLDDGVILTNNYSLLGTIKLGGIDFLTTSKKDLIELHASIYSVFRNFVTPEFKFYFHTVKKKIVIDETNRDYSLAFSNDFMRAYNEKQKRESFYDISFYLTIEQDLLDTLNEPVMNKKHFADNNFEEFQRIIRAKLENFKDRIELIEELLSKYHPTRLKEYTKDGVVYSKQCEFYNFLVGMNEAPFICNRKDLYLKEKMHGGVKEVYFANKHGKILNDDLSEKYFSAIEISEYAPKSQSDLFDKINALDSEFIFMHAYSPKNSQVLKDKLAFTSRRIIISGGSKEQGMTLGCLSELVGNGDITLGSYGNSLVLFADSFEKMKQSVKECVSSLNAKGFLANAATFSMENYFFAKHCSFITLPFIFDVTSNNFADFIAMRAMSFDGNQENNAWGNSVMTLKSEINSPFYLNFHMPTDFGSASAGHTLILGSTGSGKTVFMSMTLNAMGQFVHNFPANVSKDKQKLTMVYMDKDYGAYGNIVAMGGEYVKIELGTDTGLNPFAWAACVQKTNATMEQKQTAISVVKELVKNLATKSDEKDENGNSISFSLADSNTLAAAVTNLITGDMNLDYPITQLINAFGKDHNDPNGLVARLAPFCKSTNGEFQWLFDNKATDRLDFSKTIIGVDGSSFLDNNDVSPFICFYLFARIQEAMDGRRFVLDIDEAWKYLSDPKVAYFVRDMLKTARKRNAIVRLATQSITDLLACPIADTIREQCPTKIFLRNDGGNLSDYQRLANVTEKEFEIITKGLDRKILYKQDGSPSVIASFNLRGIPKEYLKILSTDTVFVKEIDKIIQNHSIIDKYQALRQMYQQIEEY
>NZ_CP032908.1|WP_139534551.1|749340_750147_-|type-IV-secretion-system-chaperone-CagF
MKQNLREQKLLEILENDVLTILDSFSNYLFELKEELDFIEEEMEGEITEQNLTTLYDFSNFLEDHVNVFYENVLNIDDIKTEHLYSGLIDSLNANLHFVKSFLSNQDLDFRFFKEINDGQDPQKTLSRLIPLQSGKNDASSFKANNSFVSLVYVYVYFMLETIMQSYRILRLLEKPINNNINEDMQSDIENFFVQANFLEYYVQNKIYPTNHAYDFTHLIMDSIVPNWIQIDMSVEAKKKELFEKYFQNIDEVTNKMLDQKNQNKNSD
>NZ_CP032908.1|WP_000855883.1|748857_749286_-|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagG
MKTNFYKIKLLFAWCLIIGMFNAPLNADQNTDIKDISPEDMALNSVGLVSRDQLKIEIPKETLEQKVAILNDYNDKNVNIKFDDISLGSFQPNDNLGINAMWGIQNLLMSQMMGDYGPNNPFMYGYAPTYSDSSFLPPILGY
>NZ_CP032908.1|WP_021177319.1|747728_748841_-|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagH
MAGTQAIYESSSAGFLSEISSIISSTSGVAGPFAGIVAGAMSAAIIPIVVGFTNPQMTAIMTQYNQSIAEAVSMPMKAANQQYNQLYQGFNDQSMAVGNNILNISKLTGEFNAQGNTQGAQISAVNSQIASILASNTTPKNPSAIEAYATNQIAVPSVPTTVEMMSGILGNITSAAPKYALALQEQLRSQASNSSMNDTADSLDSCTALGALVGSSKVFFSCMQISMTPMSVSMPTVYAKYQALATNALTSGVNPMTTPACPIGDKVLAVYCYAEKVAEILREYYIEFVKNNTNLLQNASQMILNQSGLATSTYDTQAISNISSLYNYNIVANKSFLKSHLTYLDYIKDKLKGQKDSYLTERVQTKIIVK
>NZ_CP032908.1|WP_139534550.1|746572_747718_-|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagI
MKCFLSIFSFLTFCGLSLNGAEVVITLEPALKAIQADAQAKQKTAQAELKAIEAQSSAKEKAIQAQIEGELRTQLATMSAMLKGANGVINGVNGMTGGFFAGSDILLGVMEGYSSALSALGGNVKMIVEKQKINTQTEIQNMQIALQKNNEIIKLKMNQQNTLLEALKNSFEPSVTLKTQMEMLSQALGSSSDNAQYIAYNTIGIKAFEETLKGFETWLKTAMQKATLIDYNSLTGQALFQSAIYAPALSFFSSMGAPFGIIETFTLAPTKCPYLDGLKISACLMEQVIQNYRMIVALIQNKLSDADFQNIAYLNGINEQIKTLKGSVDLNALIEVAILNAENHLNYIENLEKKADLWEEQLKLERETTARNIASSKVIVK
>NZ_CP032908.1|WP_139534548.1|745862_746576_-|cag-pathogenicity-island-type-IV-secretion-system-associated-adhesin-CagL
MKTLVKNTISSFLLLSVLMAEDITSGLKQLDSTYKETNQQVLKNLDEIFSTTSPSANNEIGQEDALNIKKAAIALRGDLALLKANFEANELFFISEDVIFKTYMSSPELLLTYMKINPLDQKTAEQQCGISDKILVLYCEGKLKIEQEKQNIRERLETSLKAYQSNIGGTASLITASQTLVESLKNKNFIKGIKKLMLAHNKVFLNYLEELDALEISLEQSKRQYLQERQSSKIIVK
>NZ_CP032908.1|WP_139534546.1|744860_745781_+|cag-pathogenicity-island-type-IV-secretion-system-protein-CagN
MKSIFKKLGFVALYSLVVYGGLNAINTALLPSEYKELVALGFKKIKTLHQRRDDEEVTKEEKEFATNALREKLRNDRARAEQIQKNIEAFEKKNNSSIQKKAAKHKGLQELNEINANPLNDNPNSNSSNETKSNKDDNFDEMINKVNEAFVKPTAPLVPDEWRTPEIEIIINECIISSNDYDGLRKCLIKGIKDQKILAPLLEKIQEIETENNKFSRQHLSGLKLALNNSNNRTFLIASCTICEKRKKEMEQENNYQDTTNASEFGATDTKENEAKDATFSNNRSKSELPNSVINQIEQSIAHGKK
>NZ_CP032908.1|WP_139534560.1|758884_759652_-|glutamate-racemase
MKIGVFDSGVGGFSVLKSLLKAQLFDEIIYYGDSARVPYGTKDPTTIKQFGLEALDFFKPHQIKLLIVACNTASALALEEMQKHSKIPIVGVIEPSILAIKQQVKDKNAPILVLGTKATIQSNAYDNALKQQGYLNVSHLATSLFVPLIEENILEGELLETCMRYYFTPLEILPEVVILGCTHFPLIAQKIESYFMGHFALSTPPLLIHSGDAIVGYLQQKYALKKNAHAFPKVEFHASGDVVWLEKQAKEWLKL
>NZ_CP032908.1|WP_001004709.1|759690_761007_-|transcription-termination-factor-Rho
MNENAPTHKSSHKVKTHTPVSGYHIEDLRTYPTEKLLEIANKLKVENPQEFKRQDLMFEILKTQVTQGGYILFTGILEIMPDGYGFLRGFDGSFSDGHNDTYVSPSQIRRFALRNGDIVTGQVRSPKDQEKYYALLKIEAINYLPSDEIKNRPLFDNLTPLFPDEQIKLEYEPTKVTGRMLDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQRSVKGQVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLTKVWVLRNVMQQMDDIEALSFVYSKMQQTKDNEEFLNLMNEK
>NZ_CP032908.1|WP_000715278.1|761271_761475_+|50S-ribosomal-protein-L31
MKKGIHPEYIPCKVTCVTSGKEIEVLSTKPEMRIDISSFCHPFYTGSDKIADTAGRVEKFKQRYNLK
>NZ_CP032908.1|WP_139534562.1|761499_762363_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MLYFLPTPIGNLADITLRALEVLERCEVFLCEDTRVSKRLLHLLAQNPVISHSFPNIATKKREFIAFHSHNDQEFLNQIELSFFDKEIAVMSDAGMPSLSDPCMSLAAYALKHNIQYDVLPGANALTTAFCASGFLEGRFFYAGFLPHKSKERRLKIAKILNALAYLEEKTPVVFYESPHRLLETLKDLNDLAKGMHLFAAKELTKLHQQYYLGEVSQIIERLQQNNIQGEWVLVLLNEKKIEPCMGLSALLELDLPPKIKAKIEAAMTQKNAKELYFQRLLEEKNQ
>NZ_CP032908.1|WP_139534564.1|762375_763059_+|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MQAVIYGKQVVMRILNSHQEKLQEIYLSKEIDKKFFFALKKACPNIIKVDNKKAQSLAKGGNHQGVLAKVELPLAVSLKEVKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAKELAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGTSMQGSSQVENLSLKKCALFLGSEHEGLSKKILAKMDTILSVKMRRDFDSLNVSVAAGILMDKIN
>NZ_CP032908.1|WP_139534566.1|763071_764037_+|sialidase
MEQNKKSLENLDLSDVQNISKDISGAALEELSLKNLDKNLQILKEVGVAEICKATKIASKNIHSILEKRYESLSRVHARGFIQILEREYKIDLSAWMKEFDKACAFKEGVSEEQNQETDPEEKTKNPLKVEIDYSINQANTSLSKKSSKWKPFVLVLGVVVIILAVVIIQNSSSLKEERGQESAIKSGTKKSSFNKVNPTEENKPEPTPKLEEKPTEQDKQEKEAIKEDPNTIYIIPKKDIWVEVIDLDEKKNSFQKVFKKNYSLETKNHRLLLRFGHGHLSLKNNHQEQEYNDGKTKRFLYEPNKGLTLINEAQYKELQQ
>NZ_CP032908.1|WP_139534567.1|764033_764855_+|hypothetical-protein
MKNLFLAFIVGGMLLNADALNDKVENLMGERAYHTNKLFLERLFKNRKAFYVMGRLDSLKLLNTLKENGLLSFNFDKPSMLKITFKASSNPLAFAKSINNSLSMMGYSYVLPIKMQSSSGENVFSYELKTEYVLDPNILIETMKRHGFDFTDIRRISLKEWEYDFSLQEVKLPNARALVLSSDPVEFKEASGKYWLSVNQNAYLKISSNNPLWQPKIIFYDENLKIIQIIAKENRQQEIALNLLDGVRFIHITDAKNPIILKNGISVVFDAMP
>NZ_CP032908.1|WP_127921559.1|764927_765365_-|hypothetical-protein
MVIYEKIKSRFSRNWSLRNRGRHFASASVYFFSLLVITAVNRSSAVAWLLMPEHLIWWFLISFSGEFVADMAFGKKSKILKTRFGISIVSGVSLLLGALPAHLFFVWFGFINWWAVLFIEAGAGLLVGCVIQKIFFGKYWVDRYY
>NZ_CP032908.1|WP_000312020.1|765838_766777_-|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha
MAVYLDFENHIKEIQNEIELALIRGDEDAKEILEKRLDKEVKSIYSNLTDFQKLQLARHPDRPYAMDYIDLILKDKYEVFGDRHYNDDKAIVCFIGKIDNVPVVVIGEEKGRGTKNKLLRNFGMPNPCGYRKALKMAKFAEKFNLPILMLVDTAGAYPGIGAEERGQSEAIAKNLQEFASLKVPTISVIIGEGGSGGALAIAVADKLAMMEYSIFSVISPEGCAAILWDDPSKTEVAIKAMKITPRDLKEAGLIDDIILEPSKGAHRDKFSAANTIKEYFLDALRTIQQDPHFLDNRYQKLMSLGSFVEGMN
>NZ_CP032908.1|WP_033601483.1|766799_768038_-|beta-ketoacyl-ACP-synthase-II
MRRIVVTGMGMINSLGLNKEDSFLAIAKGECGIKHIESFDASAFPVRIAGEITDFDPTEVMNPKDVKKAGRFIQLALKATREAMKDSGILDAHNRCPEELANRMGVSSGSGIGGLGNIEANSIFCFEKGPRKVNPFFITSALVNMIGGFTSIEFGIKGPNLSSVTACAAGTHAIIEAVKTILLNGADKMLVVGAESTICPVGIGGFASIKALSTRNDDPKKASRPFDKDRNGFVMGEGAGALVLEEYESAKKRGAKIYAEFAGYGESGDANHITAPAPEGEGAFRAMKMALEMAKVEVGYVNAHGTSTHYNDWYESIALKNVFGSKEKVPPVSSTKGQIGHCLGAAGALEAVISIMAMNQGILPPTINQETPDPECDLDYIPNTAREKQVDAVMSNSFGFGGTNGVVIFKKA

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Crispr_ID: NZ_CP032908_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP032908_2

1160332-1160455

Orphan

Consensus_repeat	Method
TGAACAGAAAATCTCTGAACAGAAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP032908_2

>merge|NZ_CP032908|2|1160332-1160455|CRISPRCasFinder
TGATCAAAAAGCCCTTGAACAGAAAATCTCTGAACAGAAACCGCTTGATCAAAAACCGCAAAAACTCTCTGAACAGAAACCCCTTGATCAGAAACTCTCTGAACAGAAAATCTCTGAACAAAAG

>NZ_CP032908|2|2|1160332-1160455|CRISPRCasFinder
TGATCAAAAAGCCCTTGAACAGAAA	ATCTCTGAACAGAAACCGCTTGATCAAAA
ACCGCAAAAACTCTCTGAACAGAAA	CCCCTTGATCAGAAACTCTC
TGAACAGAAAATCTCTGAACAAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP032908.1\|WP_139534968.1\|1164154_1166182_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|223288
NZ_CP032908.1\|WP_139534967.1\|1162395_1163019_+\|restriction-endonuclease	unknown	unknown	unknown
NZ_CP032908.1\|WP_139534962.1\|1152117_1153230_-\|hydrogenase-formation-protein-HypD	unknown	unknown	gnl\|CDD\|272892
NZ_CP032908.1\|WP_139534972.1\|1172590_1175023_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273808
NZ_CP032908.1\|WP_000335461.1\|1153244_1153481_-\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	unknown	unknown	gnl\|CDD\|223375
NZ_CP032908.1\|WP_000454250.1\|1154460_1154760_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380358
NZ_CP032908.1\|WP_139534964.1\|1157885_1159460_+\|flagellar-hook-length-control-protein-FliK	unknown	unknown	gnl\|CDD\|376734
NZ_CP032908.1\|WP_139534970.1\|1168339_1169941_+\|Hop-family-adhesin-AlpB	unknown	unknown	gnl\|CDD\|280099
NZ_CP032908.1\|WP_139535276.1\|1163011_1164151_+\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|223897
NZ_CP032908.1\|WP_139534961.1\|1147763_1148024_-\|YafQ-family-addiction-module-toxin	unknown	unknown	gnl\|CDD\|379750
NZ_CP032908.1\|WP_139534969.1\|1166767_1168318_+\|Hop-family-adhesin-AlpA	unknown	unknown	gnl\|CDD\|280099
NZ_CP032908.1\|WP_161593993.1\|1148208_1148379_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032908.1\|WP_139534963.1\|1154857_1156063_-\|acetate/propionate-family-kinase	unknown	unknown	gnl\|CDD\|234680
NZ_CP032908.1\|WP_139534973.1\|1175199_1175631_-\|Sua5-YciO-YrdC-YwlC-family-protein	unknown	unknown	gnl\|CDD\|223088
NZ_CP032908.1\|WP_139534235.1\|1148760_1150965_-\|Hop-family-adhesin-BabA	unknown	unknown	gnl\|CDD\|375731
NZ_CP032908.1\|WP_139534971.1\|1170800_1172345_-\|outer-membrane-beta-barrel-protein-HofG	unknown	unknown	gnl\|CDD\|334957
NZ_CP032908.1\|WP_000003589.1\|1153480_1154209_-\|hydrogenase-nickel-incorporation-protein-HypB	unknown	unknown	gnl\|CDD\|272891
NZ_CP032908.1\|WP_139534974.1\|1175635_1178893_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP032908.1\|WP_139534966.1\|1160526_1162344_+\|flagellar-hook-basal-body-complex-protein	unknown	unknown	gnl\|CDD\|235620
NZ_CP032908.1\|WP_000973846.1\|1154321_1154450_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP032908.1\|WP_139534968.1\|1164154_1166182_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	1.19291e-132
NZ_CP032908.1\|WP_139534962.1\|1152117_1153230_-\|hydrogenase-formation-protein-HypD	gnl\|CDD\|272892	TIGR00075, Hydrogenase_isoenzymes_formation_protein_HypD, hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea. [Protein fate, Protein modification and repair].	0
NZ_CP032908.1\|WP_000335461.1\|1153244_1153481_-\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	gnl\|CDD\|223375	COG0298, HypC, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones].	1.92061e-31
NZ_CP032908.1\|WP_000454250.1\|1154460_1154760_-\|cupin-domain-containing-protein	gnl\|CDD\|380358	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain. This family includes prokaryotic and archaeal proteins homologous to HP0902, a functionally uncharacterized protein from Helicobacter pylori and Spy1581, a protein of unknown function from Streptococcus pyogenes. These proteins demonstrate all-beta cupin folds that cannot bind metal ions due to the absence of a metal-binding histidine that is conserved in many metallo-cupins. HP0902 is able to bind bacterial endotoxin lipopolysaccharides (LPS) through its surface-exposed loops, where metal-binding sites are usually found in other metallo-cupins, and thus may have a putative role in H. pylori pathogenicity.	4.69111e-19
NZ_CP032908.1\|WP_139534964.1\|1157885_1159460_+\|flagellar-hook-length-control-protein-FliK	gnl\|CDD\|376734	pfam02120, Flg_hook, Flagellar hook-length control protein FliK. This is the C terminal domain of FliK. FliK controls the length of the flagellar hook by directly measuring the hook length as a molecular ruler. This family also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems.	4.11572e-12
NZ_CP032908.1\|WP_139534970.1\|1168339_1169941_+\|Hop-family-adhesin-AlpB	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	1.04948e-53
NZ_CP032908.1\|WP_139535276.1\|1163011_1164151_+\|N-6-DNA-methylase	gnl\|CDD\|223897	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	5.03487e-53
NZ_CP032908.1\|WP_139534961.1\|1147763_1148024_-\|YafQ-family-addiction-module-toxin	gnl\|CDD\|379750	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ. YafQ is a family of bacterial toxin ribonucleases of type II toxin-antitoxin systems. The E.coli gene is expressed from the dinB operon. The cognate antitoxin for the E. coli protein is DinJ, in family RelB_antitoxin, pfam02604.	1.70079e-33
NZ_CP032908.1\|WP_139534969.1\|1166767_1168318_+\|Hop-family-adhesin-AlpA	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	2.37025e-54
NZ_CP032908.1\|WP_139534963.1\|1154857_1156063_-\|acetate/propionate-family-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
NZ_CP032908.1\|WP_139534973.1\|1175199_1175631_-\|Sua5-YciO-YrdC-YwlC-family-protein	gnl\|CDD\|223088	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis].	5.26241e-05
NZ_CP032908.1\|WP_139534235.1\|1148760_1150965_-\|Hop-family-adhesin-BabA	gnl\|CDD\|375731	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain. This is the N-terminal extracellular adhesion domain of Sialic acid binding adhesin (SabA) present in Helicobacter pylori. The N-terminal domain of SabA functions as a sugar-binding adhesion domain with conserved disulfide bonds. Notably, these amino acid residues are not only conserved among SabA orthologs but also between SabA and BabA.	9.72104e-75
NZ_CP032908.1\|WP_139534972.1\|1172590_1175023_-\|TonB-dependent-receptor	gnl\|CDD\|273808	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein. This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	1.55854e-48
NZ_CP032908.1\|WP_000003589.1\|1153480_1154209_-\|hydrogenase-nickel-incorporation-protein-HypB	gnl\|CDD\|272891	TIGR00073, nickel_incorporation_protein_HypB, hydrogenase accessory protein HypB. A GTP hydrolase for assembly of nickel metallocenter of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel. hits scoring 75 and above are safe as orthologs. [SS 1/05/04 I changed the role_ID and process GO from protein folding to to protein modification, since a protein folding role has not been established, but HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.] [Protein fate, Protein modification and repair].	1.32809e-108
NZ_CP032908.1\|WP_139534974.1\|1175635_1178893_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP032908.1\|WP_139534966.1\|1160526_1162344_+\|flagellar-hook-basal-body-complex-protein	gnl\|CDD\|235620	PRK05841, flgE, flagellar hook protein FlgE; Validated.	0
NZ_CP032908.1\|WP_139534971.1\|1170800_1172345_-\|outer-membrane-beta-barrel-protein-HofG	gnl\|CDD\|334957	pfam02521, HP_OMP_2, Putative outer membrane protein. This family consists of putative outer membrane proteins from Helicobacter pylori (campylobacter pylori).	6.67736e-179

>NZ_CP032908.1|WP_139534964.1|1157885_1159460_+|flagellar-hook-length-control-protein-FliK
MPSPINPIHTNASANANALNSGAKNEDTKNAPKSVSKDFSKILNQKISKDKTAPKESPNPNALKATPQDTKENAKEDAKALEKTPTPHHQHAKDFAKDQQAPTLKDWLNHKKTTAPHETQHETHEANETNPKTPNETLNKNEKKPNEVISNAHQTNLPNKNPITPTNHANNAIKNPTTPTHNAKEPKTLKDIQTLSQKHDLNANNIQAVTTPENKTPLNASDQLALKTTQTPTNHTLAKNDAKNTANLSSVLQSLEKKESPNKEHATPPNNEKKTPPLKEALQMNAIKRDKTLSKKKSEKTPTKAQTTAPSIAPENAPKIPLKTPPLMPLIGANPPNDNIPTLLEKEETTKEASDNKEKTKESNNSAQSAQNTQASDKTSENKSVTPKETIKHFTQQLKQEFQEYKPPMSRISMDLFPKELGKVEVIIQKVGKNLKVSVISHNNSLQTFLDNQQDLKNSLNALGFEGVDLSFSQDSSKEQPKEPFKEPFKEQELTPLKENALKSYQENTDHENQETSMQITLYA
>NZ_CP032908.1|WP_139534963.1|1154857_1156063_-|acetate/propionate-family-kinase
MEILVLNLGSSSIKFKLFDMKENKPLASGLAEKIGEEIGQLKIKSHLHHNDQELKEKLVIKDHASGLLMIRENLTKMGIIKDFNQIDAIGHRVVQGGDKFHAPVLVNELVMQEIGKLSILAPLHNPANLAGIEFVQKAHPHISQIAVFDTAFHATMPSYAYMYALPYGLYEKYQIRRYGFHGTSHHYVAKEAAKFLNIPYEKFNAISLHLGNGSSAAAIQKGKSVDTSMGLTPLEGLIMGTRCGDIDPTVVEYIAQCANKSLEEVMKILNYESGLKGICGDNDARNIEMRAKKGDKQARLAFEMCAYRIKKHIGAYMVALGRVDAIIFTGGLGENYSALRESVCERLENLGIALCKPTNDNPGNGLVNLSQPNTKIQVLRIPTDEELEIALQTKKVLEKTE
>NZ_CP032908.1|WP_000454250.1|1154460_1154760_-|cupin-domain-containing-protein
MEVVHFLEGVCFEKLHIEALSENSSNKEIRICMPKGAVMDKHKAPGAISVQVLEGKIIFEVENEKIEMPKGALISLEAQVLHRLDALENSVIRLSLSKK
>NZ_CP032908.1|WP_000973846.1|1154321_1154450_-|hypothetical-protein
MMKAVFINVWYLLLTIILLIIIWRIIKLVLKDKNDSDDKGLG
>NZ_CP032908.1|WP_000003589.1|1153480_1154209_-|hydrogenase-nickel-incorporation-protein-HypB
MSEQRKESLQNNPNLSKKDVKIVEKILSKNDIKAAEMKERYLKEGLYVLNFMSSPGSGKTTMLENLADFKDFKFCVVEGDLQTNRDADRLRKKGVSAHQITTGEACHLEASMIEGAFDLLKDEGALEKSDFLIIENVGNLVCPSSYNLGAAMNIVLLSVPEGDDKVLKYPTMFMCADAVIISKADMIEVFNFRVSQVKEDMQKLKPEAPIFLMSSKDPKSLEDFKNFLLEKKRENYQSTHSF
>NZ_CP032908.1|WP_000335461.1|1153244_1153481_-|HypC/HybG/HupF-family-hydrogenase-formation-chaperone
MCLAIPSKVIAINDNVALLETLGVQREASLDLMGESVKVGDYVLLHIGYVMSKIDEKEALESIELYQEMIAKMNETHE
>NZ_CP032908.1|WP_139534962.1|1152117_1153230_-|hydrogenase-formation-protein-HypD
MSVDHLISPFRDKQTLLALSNAIKKLASKLEKKLVIMEVCGGHTHSLMKYGLLDLMPNNLEFVHGPGCPVCVMPRARLDEAYELAMIKDSIILSLGDMMRVPGSYGSLIQAREKGLDARFLYSPMQALEIAKENPTKKVIYIAIGFETTTPMSASVLLNAKKEKLKNLFFHINHILVPPSVSAILKDPACQINALLAPSHVSVISGAQIYSPLVDRFKLPIIVSGFEPVDILESVLMLIKQALNKEAKLEIQYKRAVSYEGNVKAQELVNACMEVRENFEWRGLGNIKHSALKLKETFASYDAEKVFKEHLSHKTSKENKACKCGEILKGIAKPLDCSLFATTCTPQNPIGSCMVSSEGACAAYYRYKRV
>NZ_CP032908.1|WP_139534235.1|1148760_1150965_-|Hop-family-adhesin-BabA
MKKHILSLTLGSLLVSALSAEDDGFYTSVGYQIGEAAQMVTNTKGIQELSDNYEKLNNLLTRYSTLNTLIKLSADPSAVNAARENLGASAKNLIGDKTNSPAYQAVLLAINAAVGFWNVLGYATQCGGNANGQKSTSSTTIFNNEPGYRSTSITCSLNGYTPGYYGPMSIENFKKLNEAYQILQTALKKSLPALKENNGTVSVTYTYTCSGQGNNNCNIEGVKTTTQTIDGKTVNTTISSKVVDSTASGNTSHVSYTEITNKLDGVPDNAQALLAQASTLINTINTACPYFSVTNSSSPKAPKMEPTSGKLCSFTEEISAIQKMITDAQELVNQTSTINSNEQTTPVGGNNGKPFNPFTDASFAQGMLANASAQAKMLDLAHQVGQTLNPDRLTGNFHNFVKNFLATCNNPSTAGTSGTQGSAPGTVTTQTFASGCAYVEQTLTNLNNSISHFGTQAQQIQQAENIADTLVNFKSRYSELGNTYNSITTALSKVPNAQSLQNVVSKKNNPYSPQGIETNYYLNQNSYNQIQTINQELGRNPFRKVGIVSSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSVGLFGGIALAGTSWLNSEYVNLATVNNVYNAKMNVANFQFLFNMGVRMNLARPKKKDSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY
>NZ_CP032908.1|WP_161593993.1|1148208_1148379_-|hypothetical-protein
MPNTTNKDYTKYSEKQLFNLIHQLEQKIKKMQNDRVSFKEKMAKELEKRDQNFRIK
>NZ_CP032908.1|WP_139534961.1|1147763_1148024_-|YafQ-family-addiction-module-toxin
MLKIRHHILFKKDFKKLVKNGFDDSVLNEVILRKKEPLPPQFQDHALKGKWKPFRECHIKADILLVYLVKDDELVLLRLGSHSELF
>NZ_CP032908.1|WP_139534966.1|1160526_1162344_+|flagellar-hook-basal-body-complex-protein
MNDTLLNAYSGIKTHQFGIDSLSNNIANVNTLGYRSNDPEFKTLFSSHLDALNAKSVVANDRNYGVTGSGNVLSNKDGEYMPSEGEFHMAYQGKGWFVIGPNKNGEITINKDGFSKKQDNFLTRAGNFARDADGYLVTPEGYYVYGIDLKKIKDGTLNSTARDEDIEKLHGNTLSPLQIPQDLTYQPVLSTKVGISVNLNPKDHLKGVQDFFLNDKGEIIKERFLNQDINALANDDNEPIDAITNRKLNISIQKEDGKKEDLVFTYGDAEKGENQFKTLGDLQKLLKEKTGLDLNLIKSEKDAKSPPLLLEIANPSETPITFSLSGGIADKLGLKADGMELKKGISRDSVAIKIPYYSTEVDIYDKAGDKYLLQSEYYMTNSNDPTSSPTSKRKNQTWEVKSYIVDPKNKTPINDPTWEIVGFDSATHKMKSAPMTLDFKGNKLTYSLDKSENHDSSDLSYQDSKLLEASQDGKPRGIFRDMRIEENGVISLAFSNGVVEPVARIGILAFTNDQGLRKIGGNLYEMQEGTINGENRPLSGNPILGWDEEGKLKFGKIRHKYLETSNVNAGNALTNLILMQRGYSMNARAFGAGDDMIKEAISLKK
>NZ_CP032908.1|WP_139534967.1|1162395_1163019_+|restriction-endonuclease
MIPTQLNEIAEFLKTNPYNLSQPLQDGRLNSSVNEEEILNIIKDYFPIQLPKAREWWDFSFEENDIFYPVNIKTTTTKTADNLNCKLGIYYALCGLLPEFNNEIAWEKYFQKLHKDLGKNTNRDYYFLIINKNDPKDVFINSLKGIQTLQPNGNNLPFQCKWDNNRKIVQRSFIESKNFILSALAKSVTLRANIYLAFKEVFGEFFE
>NZ_CP032908.1|WP_139535276.1|1163011_1164151_+|N-6-DNA-methylase
MNNLDIKTLGQVFTPKNIVDFMLTLKHNQGSVLEPSAGDGSFLKRLKKAVGIEIDPKICPKNALCMDFFDYSLENQFDTIIGNPPYVKHKDIAPSTKEKLHYSLFDERSNLYLFFIEKAIKHLKPQGELIFITPRDFLKSTSSVKLNEWIYKEGTITHFFELGDQKIFPNAMPNCVIFRFCKHNFSRITNDGLQFVCQKGILYFLNQSYTQKLSEVFKVKVGAVSGCDKIFKNEKYGNLEFVTSITKRTNVLEKMVFVNKPNDYLLQHKDSLMQRKIKKFNENNWYQWGRMHHISPKKRIYVNTKTRQKNPFFIHQCPNYDGSILALFPYNQNLDLQNLCDKLNAINWQELGFVCGGRFLFSQRSLENALLPKDFLNLG
>NZ_CP032908.1|WP_139534968.1|1164154_1166182_+|UvrD-helicase-domain-containing-protein
MLETLQLNPEQLKAALASKGHNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNEMIARVAKYFKSSSKIEAGTFHAVAYRYLKEHYPNLILKQPKELRKLLESIVDTKNAIDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSSKNPEHTPYAALYENILDEFENTKKKHDYIDYNDLLLLFKKAMLERPSPYKEVLCDEFQDTNPLQESILDAINPPSLFCVGDYDQSIYAFNGADISIISNFTQKYKNARVFTLTKNYRSSKEILDLANQVIQRNERIYPKNLEVVKSGKFNKPTLLNYNDNIAQCQDIAKRIVMRKNFKEVAVIFRNNASADQLEAALRSHNVPSKRKGSASFFESKEVALALDICALIFNPKDIMAAIHILSYISDIGSNTAKDIHEALMLLGNGDLKLALTHPSKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFHSHPVLMHPKISLNGAKMLSDFFTLYTKAPIHSPSALIKHILESAFFQTFKTRLLKERSKNKDGSYNEFKKLQAQKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSNEATQGEGVNLLSVHASKGLEFKDVYIIDLMEGRFPNHKLMNTGGGIEEERRLFYVAITRAKENLWLSYAKNELRENAKPKEYKPSVFLYEAGLLKPDSK
>NZ_CP032908.1|WP_139534969.1|1166767_1168318_+|Hop-family-adhesin-AlpA
MIKKNRTLFLSLALCASISYAEDDGGFFTVGYQLGQVMQDVQNPGGAKSDELARELNADVTNNILNNNTGGNVAGALSNAFSQYLYSLLGAYPTKLNSNDVSANALLSGAVGSGTCAAAGTAGGTSLNTQSACTAAGYYWLPSLTDRILSTIGSQTNYGTNTNFPNMQQQLTYLNAGNVFFNAMNKALEKNGTATSGTNGATGSDGQTYSQQAIQYLQGQQNILNNAANLLKQDELLLEAFNSAVAANIGNKEFNSAAFTGLVQGIIDQSQLVYNELTKNTISGSAVNNAGINSNQANAVQGRASQLPNALYNAQVTLDKINALNNQVRSMPYLPQFRAGNSRATNILNGFYTKIGYKQFFGKKRNIGLRYYGFFSYNGASVGFRSTQNNVGLYTYGVGTDVLYNIFSRSYQNRSVDMGFFSGIQLAGETFQSTLRDDPNVKLHGKINNTHFQFLFDFGMRMNFGKLDGKSNRHNQHTVEFGVVVPTIYNTYYKSAGTTVKYFRPYSVYWSYGYSF
>NZ_CP032908.1|WP_139534970.1|1168339_1169941_+|Hop-family-adhesin-AlpB
MKQNLKPFKMIKENLMTQSQKVRFLAPLSLALSLSFNPVGAEEDGGFMTFGYELGQVVQQVKNPGKIKAEELAGLLNSTTTNNTNINIAGTGGNVAGTLGNLFMNQLSNLIDLYPTLNTSNIHQCGATNNGSSGSGATAAATTSGSSTSPCFQGNLALYNEMVGSIKTLSQNISKNIFQGDNNTTSQNLSNQLSELNTASVYLTYMNSFLNANNQAGGIFQNNTNQAYGHGVTAQQIAYILKQASITMGPSGDSGAAAAFLDAALAQHVFNSANAGNDLSAKEFTSLVQNIVNNSQNALTLANNANISNSTGYQVSYGGNIDQARSTQLLNNTTNTLAKVTALNNELKANPWLGNFAAGNSSQVNAFNGFITKIGYKQFFGENKNVGLRYYGFFSYNGAGVGNGPTYNQVNLLTYGVGTDVLYNVFSRSFGSRSLNAGFFGGIQLAGDTYISTLRNSPQLASRPTATKFQFLFDLGLRMNFGILKKDLKSHNQHSIEIGVQIPTIYNTYYKAGGAEVKYFRPYSVYWVYGYAF
>NZ_CP032908.1|WP_139534971.1|1170800_1172345_-|outer-membrane-beta-barrel-protein-HofG
MRQEKYFLTSSLSLLSFLLCPAEAFDYRFSGRVENFSKIGFNNSQINTKKGIYPTESFIDIVTLAQVKVNLLPKGTENHRLSVSLGGAIAAIPYDKTKYYINQANGKVFGSIVENFIGGYHGYFFNKYLGPAYAGTSQSASYHARPYVVDTAFLRYDYKDVFGFKAGRYEANIDFMSGSNQGWEVYYQPYKTETQRLRFWWWSSFGRGLAFNSWIYEFFATVPYLKKGGNPSNSNDFINYGWHGITTTYSYKGLDAQFFYYFAPKTYNAPGFKLVYDTNRNFENVGFRSQSMIMTTFPLYYRGWYNPETNTYSLEDSTPHGSLLGRNGVTLNIRQVFWWDNFNWSIGFYNTFGNSDAFLGSHTMPRGNNTSYIGSEISITTRHAGMIGYDFWDNTAYDGLADAITNANTFTFYTSVGGIHKRFAWHVFGRVSHANKNALGQVGRANEYSVQFNASYAFTESVLLNFRITYYGARINKGYQAGYFGAPKFNNPDGDFSANYQDRSYMMTNLTLKF
>NZ_CP032908.1|WP_139534972.1|1172590_1175023_-|TonB-dependent-receptor
MNDKRFRKYCSFSIFLSLLGMFELEAKEEKEERKTERKKEKNAQHTLGKVTTQAAKIFNYNNQTTISSKELERRQANQISDMFRRNPNINVGGGAVIAQKIYVRGIEDRLARVTVDGAAQMGASYGHQGNTIIDPGMLKSVVVTKGAAQASAGPMALIGAIKMETKSASDFIPKGKDYAISGAATFLTNFGDRETVMGAYRHNHFDALLYYTHQNIFYYRDGDNAMKNLFDPKAENKVTGSPSEQNNVMAKINGYLSDRDTLTLSYNMTRDNANRPLRANFTGTFLPYSCGDFNAFPNEQNPDDCLFENDASLFKTYSVNLVHNVSLNYEREGGSRFGDPKLKINGYTSIRNVQIDPLFKPNDIATIIPFTPNPQLSEENECVAQGGIYNALKQTCSITFKSLGGGSVVANKNLFIINSGFNANVIHTIDHKNDNLLEYGLNYQNLTTFDKAIPNSELVKPGDAPDACLRVTSPDDPNMNGRCQRNGATANVVGVYAQANYTLHPMVTLGAGTRYDVYTLVDKDWQLHITQGFSPSAALNVSPLENLNFRLSYAYVTRGPMPGGLVWMRQDNLRYNRNLKPEIGQNVEFNTEYSSQYFDFRAAGFVQLISNYINQFSSTLFVTNLPAQDIIYVPGYEVSGTAKYKGFSLGLSVARSWPSLKGRLIADVYELAATTGNVFILTASYTIPRTGLSITWLSRFVTDLSYCSYSPYRNGPTDIDRRPSNCPKTPGIFHVHKPGYGVSSFFITYKPTYKKLEGLSLNAVFNNVFNQQYIDQASPVMSPDEPNQDKYARGMAEPGFNARFEVSYKF
>NZ_CP032908.1|WP_139534973.1|1175199_1175631_-|Sua5-YciO-YrdC-YwlC-family-protein
MALVYLVQSDTTIGLLSKDSEKLNALKGRPKNQSVLIESADFSTLKSLVRAPNAFKSLIRRSAKTTFIYPNSKAVRVIKGRHRDFLKRFKTLYSTSANLTQCAYDKEIAFSLADVIVSDERGLFESSSSKIFRLYKNKKVRVR
>NZ_CP032908.1|WP_139534974.1|1175635_1178893_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDISNILLIGSGPIVIGQACEFDYSGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITGENIATIIKKEKIDAILPTMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAYTELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESLLGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFAILREIGVDTGGSNVQFAIHPETLRMVVIEMNPRVSRSSALASKATGFPIAKVATMLAVGFSLDEIKNDITNTPASFEPSLDYIVVKIPRFAFEKFAGVSSTLGTSMKSIGEVMAIGGNFLEALQKALCSLENNWLGFESLSKDLEMIKKEIRRPNPKRLLYIADAFRLGVSVDEVFELCQIDRWFLSQIQKLVKAEESINSSVLTDAKKLRGLKNLGFSDARIAAKIKENENLEVSPFEVELARINLQIAPNFEEVDTCAAEFLSLTPYLYSTYAPNPLPPIENKQEKQEKKILIIGSGPNRIGQGIEFDYCCVHASFALKDLNIKSVMLNCNPETVSTDYDTSDTLYFEPIHFECVKSIIQRERVDGIIVHFGGQTPLKLAKDLAKMQAPIIGTPFKVIDIAEDREKFSLFLKELDIKQPENGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQILENIEELRHYLESVTHALEISPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEAGIHSGDSACFIPSTLNPEILDEIERVSAKIALHLGVVGLLNIQFAVYENSLYLIEVNPRASRTVPFLSKALGVPLAKVATRVMVLEDLKEALKFYDKKNIVEYSKGVYKPKMPHFVALKEAVFPFNKLYGSDLILGPEMKSTGEVMGIARSLGLAFFKAQTACFNPIKNKGLIFVSIKDKDKEEACVLMKRLVQLGFELCATEGTHKALEKAGVKSLKVLKISEGRPNIMDLMMNGEISMAINTSDHKSQDDAKLIRASVLKNHVSYFTTLSAIEVLLLALEESSQKDELLALQDYLK

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Crispr_ID: NZ_CP032908_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP032908_3

1181684-1181881

Orphan

I-B

Consensus_repeat	Method
TTCAATCAAGGGACTTATCACTTTAAT	CRISPRCasFinder
TTCAATCAAGGGACTTATAA	CRT

3 spacers

The CRISPR arrays of NZ_CP032908_3

>merge|NZ_CP032908|3|1181684-1181881|CRISPRCasFinder,CRT
TTCAATCAAGGCACTTATAATTTTAGTAACAGCGCAAGTTCAAGCTTTGGTAATAGTAACTTCAATCAAGGGACTTATCACTTTAATAGCGCTCAATCTGCTTTTAATCATAGCGCTTTCAATCAAGGGACTTATAACTTTAATGGCAACGCCAGCTTTGATAACGATACTTTCAATCAAGGGTCTTATAGTTTTAAT

>NZ_CP032908|3|3|1181684-1181881|CRISPRCasFinder
TTCAATCAAGGCACTTATAATTTTAGT	AACAGCGCAAGTTCAAGCTTTGGTAATAGTAAC
TTCAATCAAGGGACTTATCACTTTAAT	AGCGCTCAATCTGCTTTTAATCATAGCGCT
TTCAATCAAGGGACTTATAACTTTAAT	GGCAACGCCAGCTTTGATAACGATACT
TTCAATCAAGGGTCTTATAGTTTTAAT

>NZ_CP032908|3|1|1181684-1181874|CRT
TTCAATCAAGGCACTTATAA	TTTTAGTAACAGCGCAAGTTCAAGCTTTGGTAATAGTAAC
TTCAATCAAGGGACTTATCA	CTTTAATAGCGCTCAATCTGCTTTTAATCATAGCGCT
TTCAATCAAGGGACTTATAA	CTTTAATGGCAACGCCAGCTTTGATAACGATACT
TTCAATCAAGGGTCTTATAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP032908.1\|WP_139534968.1\|1164154_1166182_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|223288
NZ_CP032908.1\|WP_139534981.1\|1194173_1194977_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|223570
NZ_CP032908.1\|WP_001115881.1\|1189695_1189902_-\|4-oxalocrotonate-tautomerase-family-protein	unknown	unknown	gnl\|CDD\|129125
NZ_CP032908.1\|WP_000426948.1\|1192707_1193250_+\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|129173
NZ_CP032908.1\|WP_139534977.1\|1190064_1190646_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|273176
NZ_CP032908.1\|WP_139534978.1\|1190642_1191788_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|272903
NZ_CP032908.1\|WP_139534976.1\|1179827_1180823_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
NZ_CP032908.1\|WP_139534969.1\|1166767_1168318_+\|Hop-family-adhesin-AlpA	unknown	unknown	gnl\|CDD\|280099
NZ_CP032908.1\|WP_139534970.1\|1168339_1169941_+\|Hop-family-adhesin-AlpB	unknown	unknown	gnl\|CDD\|280099
NZ_CP032908.1\|WP_139535276.1\|1163011_1164151_+\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|223897
NZ_CP032908.1\|WP_000041790.1\|1194973_1195633_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032908.1\|WP_139534415.1\|1188516_1189626_+\|Hop-family-outer-membrane-protein-HopJ/HopK	unknown	unknown	gnl\|CDD\|280099
NZ_CP032908.1\|WP_053576697.1\|1195634_1196237_+\|6-pyruvoyl-tetrahydropterin-synthase-family-protein	unknown	unknown	gnl\|CDD\|223792
NZ_CP032908.1\|WP_139534980.1\|1193265_1194177_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NZ_CP032908.1\|WP_139534973.1\|1175199_1175631_-\|Sua5-YciO-YrdC-YwlC-family-protein	unknown	unknown	gnl\|CDD\|223088
NZ_CP032908.1\|WP_139534972.1\|1172590_1175023_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273808
NZ_CP032908.1\|WP_139534975.1\|1178990_1179683_-\|Bax-inhibitor-1/YccA-family-protein	unknown	unknown	gnl\|CDD\|198414
NZ_CP032908.1\|WP_139534979.1\|1191726_1192707_+\|zinc-metalloprotease-HtpX	unknown	unknown	gnl\|CDD\|235081
NZ_CP032908.1\|WP_139534974.1\|1175635_1178893_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP032908.1\|WP_139534971.1\|1170800_1172345_-\|outer-membrane-beta-barrel-protein-HofG	unknown	unknown	gnl\|CDD\|334957

Protein	Function_ID	Function_description	E-value
NZ_CP032908.1\|WP_139534968.1\|1164154_1166182_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	1.19291e-132
NZ_CP032908.1\|WP_139534981.1\|1194173_1194977_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|223570	COG0496, SurE, Predicted acid phosphatase [General function prediction only].	1.27868e-125
NZ_CP032908.1\|WP_001115881.1\|1189695_1189902_-\|4-oxalocrotonate-tautomerase-family-protein	gnl\|CDD\|129125	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function. [Energy metabolism, Other].	2.46126e-26
NZ_CP032908.1\|WP_000426948.1\|1192707_1193250_+\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|129173	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I. alternate names: Punch (Drosophila),GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	3.28556e-106
NZ_CP032908.1\|WP_139534977.1\|1190064_1190646_+\|recombination-protein-RecR	gnl\|CDD\|273176	TIGR00615, Recombination_protein_RecR, recombination protein RecR. All proteins in this family for which functions are known are involved in the initiation of recombination and recombinational repair. RecF is also required. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	1.42833e-98
NZ_CP032908.1\|WP_139534978.1\|1190642_1191788_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|272903	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family. an EGAD loading error caused one member to be called surE, but that's an adjacent gene. MJ11364 is a strong partial match from 50 to 230 aa. [Protein synthesis, tRNA and rRNA base modification].	2.32901e-138
NZ_CP032908.1\|WP_139534976.1\|1179827_1180823_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	2.16875e-160
NZ_CP032908.1\|WP_139534969.1\|1166767_1168318_+\|Hop-family-adhesin-AlpA	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	2.37025e-54
NZ_CP032908.1\|WP_139534970.1\|1168339_1169941_+\|Hop-family-adhesin-AlpB	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	1.04948e-53
NZ_CP032908.1\|WP_139535276.1\|1163011_1164151_+\|N-6-DNA-methylase	gnl\|CDD\|223897	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	5.03487e-53
NZ_CP032908.1\|WP_139534415.1\|1188516_1189626_+\|Hop-family-outer-membrane-protein-HopJ/HopK	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	1.19229e-47
NZ_CP032908.1\|WP_053576697.1\|1195634_1196237_+\|6-pyruvoyl-tetrahydropterin-synthase-family-protein	gnl\|CDD\|223792	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism].	8.7733e-21
NZ_CP032908.1\|WP_139534980.1\|1193265_1194177_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	6.38161e-75
NZ_CP032908.1\|WP_139534973.1\|1175199_1175631_-\|Sua5-YciO-YrdC-YwlC-family-protein	gnl\|CDD\|223088	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis].	5.26241e-05
NZ_CP032908.1\|WP_139534972.1\|1172590_1175023_-\|TonB-dependent-receptor	gnl\|CDD\|273808	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein. This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	1.55854e-48
NZ_CP032908.1\|WP_139534975.1\|1178990_1179683_-\|Bax-inhibitor-1/YccA-family-protein	gnl\|CDD\|198414	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins. This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	2.26302e-52
NZ_CP032908.1\|WP_139534979.1\|1191726_1192707_+\|zinc-metalloprotease-HtpX	gnl\|CDD\|235081	PRK02870, PRK02870, heat shock protein HtpX; Provisional.	0
NZ_CP032908.1\|WP_139534974.1\|1175635_1178893_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP032908.1\|WP_139534971.1\|1170800_1172345_-\|outer-membrane-beta-barrel-protein-HofG	gnl\|CDD\|334957	pfam02521, HP_OMP_2, Putative outer membrane protein. This family consists of putative outer membrane proteins from Helicobacter pylori (campylobacter pylori).	6.67736e-179

>NZ_CP032908.1|WP_139534976.1|1179827_1180823_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MKIFINGFGRIGRCVLRAILERSDNPQLEVIGINDPANWEILAYLLEHDSAHGLLNEEARYSNYKLIIGSLEIPVFNSIKDLKGVDVILECSGKFLEPKTLENYLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHFLYQNQAIISNASCTTNAIAPICAILDKAFNIKEGMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRVPSLDVSMIDLSLFLEKKAFKDPINDLLIEASKGVLKGVLEIDLKERVSSDFISNPSSVIIAPDLTFTLENMVKIMGWYDNEWGYSNRLVDMAQFMYHY
>NZ_CP032908.1|WP_139534975.1|1178990_1179683_-|Bax-inhibitor-1/YccA-family-protein
MALYDRADSRNAYAEDSLLYESELVSFVKTTYKFFAGSLLLATIGALLGLMNFQAVVQYKWVFFIAEIAAFFGLMFSKSKPGLNLFMLFAFTSLSGVTLVPLLGMVIAKAGLGAIWQALGMTTIVFGLMSVYALKTKNDLANMGKMLFIALIVVVVCSLINLFLGSPMFQVVIAGASTILFSLYIAYDTQNIVKGMYDSPIDAAVSLYLDFLNVFISILQIIGIFSDRDK
>NZ_CP032908.1|WP_139534974.1|1175635_1178893_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDISNILLIGSGPIVIGQACEFDYSGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITGENIATIIKKEKIDAILPTMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAYTELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESLLGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFAILREIGVDTGGSNVQFAIHPETLRMVVIEMNPRVSRSSALASKATGFPIAKVATMLAVGFSLDEIKNDITNTPASFEPSLDYIVVKIPRFAFEKFAGVSSTLGTSMKSIGEVMAIGGNFLEALQKALCSLENNWLGFESLSKDLEMIKKEIRRPNPKRLLYIADAFRLGVSVDEVFELCQIDRWFLSQIQKLVKAEESINSSVLTDAKKLRGLKNLGFSDARIAAKIKENENLEVSPFEVELARINLQIAPNFEEVDTCAAEFLSLTPYLYSTYAPNPLPPIENKQEKQEKKILIIGSGPNRIGQGIEFDYCCVHASFALKDLNIKSVMLNCNPETVSTDYDTSDTLYFEPIHFECVKSIIQRERVDGIIVHFGGQTPLKLAKDLAKMQAPIIGTPFKVIDIAEDREKFSLFLKELDIKQPENGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQILENIEELRHYLESVTHALEISPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEAGIHSGDSACFIPSTLNPEILDEIERVSAKIALHLGVVGLLNIQFAVYENSLYLIEVNPRASRTVPFLSKALGVPLAKVATRVMVLEDLKEALKFYDKKNIVEYSKGVYKPKMPHFVALKEAVFPFNKLYGSDLILGPEMKSTGEVMGIARSLGLAFFKAQTACFNPIKNKGLIFVSIKDKDKEEACVLMKRLVQLGFELCATEGTHKALEKAGVKSLKVLKISEGRPNIMDLMMNGEISMAINTSDHKSQDDAKLIRASVLKNHVSYFTTLSAIEVLLLALEESSQKDELLALQDYLK
>NZ_CP032908.1|WP_139534973.1|1175199_1175631_-|Sua5-YciO-YrdC-YwlC-family-protein
MALVYLVQSDTTIGLLSKDSEKLNALKGRPKNQSVLIESADFSTLKSLVRAPNAFKSLIRRSAKTTFIYPNSKAVRVIKGRHRDFLKRFKTLYSTSANLTQCAYDKEIAFSLADVIVSDERGLFESSSSKIFRLYKNKKVRVR
>NZ_CP032908.1|WP_139534972.1|1172590_1175023_-|TonB-dependent-receptor
MNDKRFRKYCSFSIFLSLLGMFELEAKEEKEERKTERKKEKNAQHTLGKVTTQAAKIFNYNNQTTISSKELERRQANQISDMFRRNPNINVGGGAVIAQKIYVRGIEDRLARVTVDGAAQMGASYGHQGNTIIDPGMLKSVVVTKGAAQASAGPMALIGAIKMETKSASDFIPKGKDYAISGAATFLTNFGDRETVMGAYRHNHFDALLYYTHQNIFYYRDGDNAMKNLFDPKAENKVTGSPSEQNNVMAKINGYLSDRDTLTLSYNMTRDNANRPLRANFTGTFLPYSCGDFNAFPNEQNPDDCLFENDASLFKTYSVNLVHNVSLNYEREGGSRFGDPKLKINGYTSIRNVQIDPLFKPNDIATIIPFTPNPQLSEENECVAQGGIYNALKQTCSITFKSLGGGSVVANKNLFIINSGFNANVIHTIDHKNDNLLEYGLNYQNLTTFDKAIPNSELVKPGDAPDACLRVTSPDDPNMNGRCQRNGATANVVGVYAQANYTLHPMVTLGAGTRYDVYTLVDKDWQLHITQGFSPSAALNVSPLENLNFRLSYAYVTRGPMPGGLVWMRQDNLRYNRNLKPEIGQNVEFNTEYSSQYFDFRAAGFVQLISNYINQFSSTLFVTNLPAQDIIYVPGYEVSGTAKYKGFSLGLSVARSWPSLKGRLIADVYELAATTGNVFILTASYTIPRTGLSITWLSRFVTDLSYCSYSPYRNGPTDIDRRPSNCPKTPGIFHVHKPGYGVSSFFITYKPTYKKLEGLSLNAVFNNVFNQQYIDQASPVMSPDEPNQDKYARGMAEPGFNARFEVSYKF
>NZ_CP032908.1|WP_139534971.1|1170800_1172345_-|outer-membrane-beta-barrel-protein-HofG
MRQEKYFLTSSLSLLSFLLCPAEAFDYRFSGRVENFSKIGFNNSQINTKKGIYPTESFIDIVTLAQVKVNLLPKGTENHRLSVSLGGAIAAIPYDKTKYYINQANGKVFGSIVENFIGGYHGYFFNKYLGPAYAGTSQSASYHARPYVVDTAFLRYDYKDVFGFKAGRYEANIDFMSGSNQGWEVYYQPYKTETQRLRFWWWSSFGRGLAFNSWIYEFFATVPYLKKGGNPSNSNDFINYGWHGITTTYSYKGLDAQFFYYFAPKTYNAPGFKLVYDTNRNFENVGFRSQSMIMTTFPLYYRGWYNPETNTYSLEDSTPHGSLLGRNGVTLNIRQVFWWDNFNWSIGFYNTFGNSDAFLGSHTMPRGNNTSYIGSEISITTRHAGMIGYDFWDNTAYDGLADAITNANTFTFYTSVGGIHKRFAWHVFGRVSHANKNALGQVGRANEYSVQFNASYAFTESVLLNFRITYYGARINKGYQAGYFGAPKFNNPDGDFSANYQDRSYMMTNLTLKF
>NZ_CP032908.1|WP_139534970.1|1168339_1169941_+|Hop-family-adhesin-AlpB
MKQNLKPFKMIKENLMTQSQKVRFLAPLSLALSLSFNPVGAEEDGGFMTFGYELGQVVQQVKNPGKIKAEELAGLLNSTTTNNTNINIAGTGGNVAGTLGNLFMNQLSNLIDLYPTLNTSNIHQCGATNNGSSGSGATAAATTSGSSTSPCFQGNLALYNEMVGSIKTLSQNISKNIFQGDNNTTSQNLSNQLSELNTASVYLTYMNSFLNANNQAGGIFQNNTNQAYGHGVTAQQIAYILKQASITMGPSGDSGAAAAFLDAALAQHVFNSANAGNDLSAKEFTSLVQNIVNNSQNALTLANNANISNSTGYQVSYGGNIDQARSTQLLNNTTNTLAKVTALNNELKANPWLGNFAAGNSSQVNAFNGFITKIGYKQFFGENKNVGLRYYGFFSYNGAGVGNGPTYNQVNLLTYGVGTDVLYNVFSRSFGSRSLNAGFFGGIQLAGDTYISTLRNSPQLASRPTATKFQFLFDLGLRMNFGILKKDLKSHNQHSIEIGVQIPTIYNTYYKAGGAEVKYFRPYSVYWVYGYAF
>NZ_CP032908.1|WP_139534969.1|1166767_1168318_+|Hop-family-adhesin-AlpA
MIKKNRTLFLSLALCASISYAEDDGGFFTVGYQLGQVMQDVQNPGGAKSDELARELNADVTNNILNNNTGGNVAGALSNAFSQYLYSLLGAYPTKLNSNDVSANALLSGAVGSGTCAAAGTAGGTSLNTQSACTAAGYYWLPSLTDRILSTIGSQTNYGTNTNFPNMQQQLTYLNAGNVFFNAMNKALEKNGTATSGTNGATGSDGQTYSQQAIQYLQGQQNILNNAANLLKQDELLLEAFNSAVAANIGNKEFNSAAFTGLVQGIIDQSQLVYNELTKNTISGSAVNNAGINSNQANAVQGRASQLPNALYNAQVTLDKINALNNQVRSMPYLPQFRAGNSRATNILNGFYTKIGYKQFFGKKRNIGLRYYGFFSYNGASVGFRSTQNNVGLYTYGVGTDVLYNIFSRSYQNRSVDMGFFSGIQLAGETFQSTLRDDPNVKLHGKINNTHFQFLFDFGMRMNFGKLDGKSNRHNQHTVEFGVVVPTIYNTYYKSAGTTVKYFRPYSVYWSYGYSF
>NZ_CP032908.1|WP_139534968.1|1164154_1166182_+|UvrD-helicase-domain-containing-protein
MLETLQLNPEQLKAALASKGHNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNEMIARVAKYFKSSSKIEAGTFHAVAYRYLKEHYPNLILKQPKELRKLLESIVDTKNAIDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSSKNPEHTPYAALYENILDEFENTKKKHDYIDYNDLLLLFKKAMLERPSPYKEVLCDEFQDTNPLQESILDAINPPSLFCVGDYDQSIYAFNGADISIISNFTQKYKNARVFTLTKNYRSSKEILDLANQVIQRNERIYPKNLEVVKSGKFNKPTLLNYNDNIAQCQDIAKRIVMRKNFKEVAVIFRNNASADQLEAALRSHNVPSKRKGSASFFESKEVALALDICALIFNPKDIMAAIHILSYISDIGSNTAKDIHEALMLLGNGDLKLALTHPSKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFHSHPVLMHPKISLNGAKMLSDFFTLYTKAPIHSPSALIKHILESAFFQTFKTRLLKERSKNKDGSYNEFKKLQAQKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSNEATQGEGVNLLSVHASKGLEFKDVYIIDLMEGRFPNHKLMNTGGGIEEERRLFYVAITRAKENLWLSYAKNELRENAKPKEYKPSVFLYEAGLLKPDSK
>NZ_CP032908.1|WP_139535276.1|1163011_1164151_+|N-6-DNA-methylase
MNNLDIKTLGQVFTPKNIVDFMLTLKHNQGSVLEPSAGDGSFLKRLKKAVGIEIDPKICPKNALCMDFFDYSLENQFDTIIGNPPYVKHKDIAPSTKEKLHYSLFDERSNLYLFFIEKAIKHLKPQGELIFITPRDFLKSTSSVKLNEWIYKEGTITHFFELGDQKIFPNAMPNCVIFRFCKHNFSRITNDGLQFVCQKGILYFLNQSYTQKLSEVFKVKVGAVSGCDKIFKNEKYGNLEFVTSITKRTNVLEKMVFVNKPNDYLLQHKDSLMQRKIKKFNENNWYQWGRMHHISPKKRIYVNTKTRQKNPFFIHQCPNYDGSILALFPYNQNLDLQNLCDKLNAINWQELGFVCGGRFLFSQRSLENALLPKDFLNLG
>NZ_CP032908.1|WP_139534415.1|1188516_1189626_+|Hop-family-outer-membrane-protein-HopJ/HopK
MQFPKVLLHSSFFLPLFLSFCIAEENGAYASVGFEYSISHAVEHNDPFLNQERIQIISNAQNKIYKLNQVENEIKGMPNTFNYINNALKNNSKLTPTEIQAEKYYLQSTLEGIEKIVMLSGGVASNPQLAQALEKMQEPITNPLELAENLKNLELQFAQSQNRMLSSLSSQIAAISNSLNALDPTSYSKNISSMYGVSLSVGYKHFFTKKKNQGFRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLYNFIDNEQKHSSVGFYVGFALAGSSWVGSGLGMWVSQTGFINNYLTDYQAKMHTSFFQIPLNFGVRVNVNRHNGFEMGLKIPLAVNSFYETHGKGLNTSLFFKRLVVFNVSYVYSF
>NZ_CP032908.1|WP_001115881.1|1189695_1189902_-|4-oxalocrotonate-tautomerase-family-protein
MPFINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLGGESVHHLRQKN
>NZ_CP032908.1|WP_139534977.1|1190064_1190646_+|recombination-protein-RecR
MNTYKNSLNHFLNLVDCLEKIPNVGKKSAFKMAYHLGLENPYLALKITHALENALENLKTCSSCNAISESEVCEICSDESRQNSQLCMVLHPRDVFILEDLKDFLGRYYVLNSIEEVDFNALEKRLIEENIKEIIFAFPPTLANDSLMLYIEDKLQHFHLTFTKIAQGVPTGVNFENIDSVSLSRAFNSRIKA
>NZ_CP032908.1|WP_139534978.1|1190642_1191788_+|tRNA-pseudouridine(13)-synthase-TruD
MNLNFMPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVKIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTHNLQERNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTKQVLEQIAQFGMPNYFGSQRFGKFNDNHKEGLKILQNETKFAHQKLNAFLISSYQSYLFNSLLSKRLEISKIISDFSLKENLEFFKQKNLSVHSNALKALKNQAHPFKILEGDVMCHYPYGKFFDALELEKESERFLKKEAVPTGLLDGKKALYAKNLSFEIEKEFQHNLLSSHAKTLGSRRFFWVFAENVTSQYIKEKAQFELGFYLPKGSYASALLKEIKHEKGENNDEF
>NZ_CP032908.1|WP_139534979.1|1191726_1192707_+|zinc-metalloprotease-HtpX
MRARCSKKSSMRKEKIMTNFEKIIAQNRLKTNAVLTTYCVIFAFIGLLVDAIRINANDLGIALFKLITFQIFPTITMIMFLVAFVVIVICIQNFSSIMLSGDEYKLIDPSKVLSSKENQIHRLLLELLEEAKLHFEPKLYIINAPYMNAFASGWDESNSLIALTSALIERLDRDELKAVIAHELSHIRHNDIRLTMCVGILSNIMLLVANFSVYFFMGNRKNSGANLARMILLLLQIVLPFLTLLLQMYLSRTREYMADSGAAFLMHDNKPMIRALQKISNDYANNDYKGIDQNSTRSAAYLFNAEMFSTHPSVKNRIQSLRKRVI
>NZ_CP032908.1|WP_000426948.1|1192707_1193250_+|GTP-cyclohydrolase-I-FolE
MENFFNQFFENIGEDKNREGLKETPKRVQELWKFLYKGYKEDPKVALKSAYFQGVCDEMIVAQNIEFYSTCEHHLLPFFGNISVGYIPKEKIVGISAIAKLIEIYSKRLQIQERLTTQIAETFDEIIEPRGVIVVCEAKHLCMSMQGVQKQNAIIKTSVLRGLFKKDPKTRAEFMQLLKS
>NZ_CP032908.1|WP_139534980.1|1193265_1194177_+|polyprenyl-synthetase-family-protein
MSNPNLSFYCNECERFESFLKNHYLHLESFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCSLVGQKDYSNQQTEYFKIALSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELIKILSANGGIKGMILGQALDCYFENMPLNLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLDSTKNSFVNLLGLEKASGYAQTLKTEVLNDLNALEPTYPLLQENLNALLNTLFKGKT
>NZ_CP032908.1|WP_139534981.1|1194173_1194977_+|5'/3'-nucleotidase-SurE
MKKILLTNDDGYHAKGIKALEQALEEMAEIYVVAPKHEKSACSQCITITAPLRAEKIKGKEGRHYRIDDGTPSDCVYLAINELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTIQGVPSIAISQILSNKNKNTPFSFDLAQKIIQDLVQNIFTKGYPLKGRKLLNVNVPNCSLQEYKGECITPKGYRLYKKEVHKRTDPKNESYFWLGLHPLEWQKRENENRLSDFDAIASNHASITPLNLDLTSYDDLKNLESWHKGMLK
>NZ_CP032908.1|WP_000041790.1|1194973_1195633_+|hypothetical-protein
MSKNHRLAFLGLIVGVFFFFNACQHRLHMGYYSEVTGDYLFNYNSTIVVAYDRSDAMTSYYINVIVYELQKLGFYNVFTQAEFPLDKAKNVIYARIVRNISAVPFYQYNYQLIDQVNKPCYFLGGQFYCSQTPTDYYAINGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGYQMLYRDLIKSTIKRIDFNRPERYYYNLRLPLYQPCYRQ
>NZ_CP032908.1|WP_053576697.1|1195634_1196237_+|6-pyruvoyl-tetrahydropterin-synthase-family-protein
MVIRRLYKFCASHVVRNCSSLKCAQNIHGHNYEVEVFIETNRLDNANMALDFGLMQQEMQTFIDSFDHAHHFWDKESVEFQRFIENHCVRYVKCSFNLSAESYALMFLYYLTRILQKSVFSNNEGELKVSSVRVHETKNGYAESFLKDLENPHFKSLVHPNCVSFSQGIQNLWHDKDFFNKIISDEKQCFFHAKPLHQIP

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Crispr_ID: NZ_CP032908_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP032908_4

1431034-1431120

Orphan

Consensus_repeat	Method
TTGTTTTTCTTGTTCTAGTTCTAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP032908_4

>merge|NZ_CP032908|4|1431034-1431120|CRISPRCasFinder
TTGTTTTTCTTGTTCTAGTTCTATCCCACTCTTGTTCGCTCTATCCCTAGCGTTTTCAGCTTCCTTTTTTTCTTGTTCTAGTTCTAT

>NZ_CP032908|4|4|1431034-1431120|CRISPRCasFinder
TTGTTTTTCTTGTTCTAGTTCTAT	CCCACTCTTGTTCGCTCTATCCCTAGCGTTTTCAGCTTC
CTTTTTTTCTTGTTCTAGTTCTAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP032908.1\|WP_001018219.1\|1449484_1449862_-\|50S-ribosomal-protein-L7/L12	unknown	unknown	gnl\|CDD\|234671
NZ_CP032908.1\|WP_139535124.1\|1440590_1449263_-\|DNA-directed-RNA-polymerase-subunit-beta/beta'	unknown	unknown	gnl\|CDD\|181983
NZ_CP032908.1\|WP_139535119.1\|1432936_1434265_-\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|223202
NZ_CP032908.1\|WP_000744170.1\|1435574_1435793_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032908.1\|WP_139535113.1\|1421619_1422876_-\|NupC/NupG-family-nucleoside-CNT-transporter	unknown	unknown	gnl\|CDD\|224883
NZ_CP032908.1\|WP_139535112.1\|1420366_1421608_-\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
NZ_CP032908.1\|WP_139535122.1\|1436017_1437007_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381304
NZ_CP032908.1\|WP_139535116.1\|1429477_1430221_+\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|225875
NZ_CP032908.1\|WP_139535123.1\|1437521_1439600_-\|elongation-factor-G	unknown	unknown	gnl\|CDD\|234569
NZ_CP032908.1\|WP_001254357.1\|1439611_1440079_-\|30S-ribosomal-protein-S7	unknown	unknown	gnl\|CDD\|235398
NZ_CP032908.1\|WP_108374187.1\|1428026_1429202_-\|sugar-transporter	unknown	unknown	gnl\|CDD\|179591
NZ_CP032908.1\|WP_139535120.1\|1434326_1435376_+\|lipopolysaccharide-heptosyltransferase-II	unknown	unknown	gnl\|CDD\|223928
NZ_CP032908.1\|WP_139535111.1\|1419668_1420370_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|188024
NZ_CP032908.1\|WP_139534781.1\|1417284_1419210_-\|Hop-family-adhesin-HopQ	unknown	unknown	gnl\|CDD\|375731
NZ_CP032908.1\|WP_001142321.1\|1440094_1440502_-\|30S-ribosomal-protein-S12	unknown	unknown	gnl\|CDD\|235355
NZ_CP032908.1\|WP_097679352.1\|1425304_1426456_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|223551
NZ_CP032908.1\|WP_139535118.1\|1431909_1432950_-\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|273543
NZ_CP032908.1\|WP_139535115.1\|1426481_1427861_-\|HP1184-family-multidrug-efflux-MATE-transporter	unknown	unknown	gnl\|CDD\|240548
NZ_CP032908.1\|WP_139535114.1\|1423183_1424515_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341025
NZ_CP032908.1\|WP_000312855.1\|1424534_1425296_+\|tRNA-2-thiocytidine(32)-synthetase-TtcA	unknown	unknown	gnl\|CDD\|236737

Protein	Function_ID	Function_description	E-value
NZ_CP032908.1\|WP_001018219.1\|1449484_1449862_-\|50S-ribosomal-protein-L7/L12	gnl\|CDD\|234671	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed.	1.11659e-45
NZ_CP032908.1\|WP_139535124.1\|1440590_1449263_-\|DNA-directed-RNA-polymerase-subunit-beta/beta'	gnl\|CDD\|181983	PRK09603, PRK09603, DNA-directed RNA polymerase subunit beta/beta'.	0
NZ_CP032908.1\|WP_139535119.1\|1432936_1434265_-\|histidine--tRNA-ligase	gnl\|CDD\|223202	COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].	5.16786e-162
NZ_CP032908.1\|WP_139535113.1\|1421619_1422876_-\|NupC/NupG-family-nucleoside-CNT-transporter	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	4.16538e-171
NZ_CP032908.1\|WP_139535112.1\|1420366_1421608_-\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
NZ_CP032908.1\|WP_139535122.1\|1436017_1437007_+\|aldo/keto-reductase	gnl\|CDD\|381304	cd19078, AKR_AKR13C1_2, AKR13C family of aldo-keto reductase (AKR). The AKR13C family includes Helicobacter pyroli aldehyde reductase (AKR13C1) and Thermotoga maritima aldo-keto reductase (AKR13C2). Aldehyde reductase (EC 1.1.1.21), also called aldose reductase, is a cytosolic NADPH-dependent oxidoreductase that catalyzes the reduction of a variety of aldehydes and carbonyls, including monosaccharides.	0
NZ_CP032908.1\|WP_139535116.1\|1429477_1430221_+\|carbonic-anhydrase	gnl\|CDD\|225875	COG3338, Cah, Carbonic anhydrase [Inorganic ion transport and metabolism].	1.29245e-124
NZ_CP032908.1\|WP_139535123.1\|1437521_1439600_-\|elongation-factor-G	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	0
NZ_CP032908.1\|WP_001254357.1\|1439611_1440079_-\|30S-ribosomal-protein-S7	gnl\|CDD\|235398	PRK05302, PRK05302, 30S ribosomal protein S7; Validated.	4.61403e-100
NZ_CP032908.1\|WP_108374187.1\|1428026_1429202_-\|sugar-transporter	gnl\|CDD\|179591	PRK03545, PRK03545, putative arabinose transporter; Provisional.	0
NZ_CP032908.1\|WP_139535120.1\|1434326_1435376_+\|lipopolysaccharide-heptosyltransferase-II	gnl\|CDD\|223928	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].	2.10467e-86
NZ_CP032908.1\|WP_139535111.1\|1419668_1420370_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|188024	TIGR00107, Purine_nucleoside_phosphorylase_DeoD-type, purine-nucleoside phosphorylase, family 1 (deoD). Purine nucleoside phosphorylase (also called inosine phosphorylase) is a purine salvage enzyme. Purine nucleosides, such as guanosine, inosine, or xanthosine, plus orthophosphate, can be converted to their respective purine bases (guanine, hypoxanthine, or xanthine) plus ribose-1-phosphate. This family of purine nucleoside phosphorylase is restricted to the bacteria. [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides].	8.56376e-144
NZ_CP032908.1\|WP_139534781.1\|1417284_1419210_-\|Hop-family-adhesin-HopQ	gnl\|CDD\|375731	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain. This is the N-terminal extracellular adhesion domain of Sialic acid binding adhesin (SabA) present in Helicobacter pylori. The N-terminal domain of SabA functions as a sugar-binding adhesion domain with conserved disulfide bonds. Notably, these amino acid residues are not only conserved among SabA orthologs but also between SabA and BabA.	4.28161e-104
NZ_CP032908.1\|WP_001142321.1\|1440094_1440502_-\|30S-ribosomal-protein-S12	gnl\|CDD\|235355	PRK05163, rpsL, 30S ribosomal protein S12; Validated.	1.80166e-84
NZ_CP032908.1\|WP_097679352.1\|1425304_1426456_-\|cation:proton-antiporter	gnl\|CDD\|223551	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	4.60066e-36
NZ_CP032908.1\|WP_139535118.1\|1431909_1432950_-\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|273543	TIGR01296, Aspartate-semialdehyde_dehydrogenase, aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. [Amino acid biosynthesis, Aspartate family].	0
NZ_CP032908.1\|WP_139535115.1\|1426481_1427861_-\|HP1184-family-multidrug-efflux-MATE-transporter	gnl\|CDD\|240548	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump.	8.74165e-101
NZ_CP032908.1\|WP_139535114.1\|1423183_1424515_+\|MFS-transporter	gnl\|CDD\|341025	cd17472, MFS_YajR_like, Escherichia coli inner membrane transport protein YajR and similar multidrug-efflux transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli inner membrane transport protein YajR and some uncharacterized multidrug-efflux transporters. YajR is a putative proton-driven major facilitator superfamily (MFS) transporter found in many gram-negative bacteria. Unlike most MFS transporters, YajR contains a C-terminal, cytosolic YAM domain, which may play an essential role for the proper functioning of the transporter. YajR-like transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.51312e-122
NZ_CP032908.1\|WP_000312855.1\|1424534_1425296_+\|tRNA-2-thiocytidine(32)-synthetase-TtcA	gnl\|CDD\|236737	PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional.	8.22861e-68

>NZ_CP032908.1|WP_139535116.1|1429477_1430221_+|carbonic-anhydrase
MKKTFLIALALATSLIGAENTKWDYKNKENGPHRWDKLHKDFEVCKSGKSQSPINIEHYYHTQDKADLQFKYAASKPKAVFFTHHTLKASFEPTNHINYRGHDYALDNVHFHAPMEFLINNKTRPLSAHFVHKDAKGRLLVLAIGFEEGKENPNLDPILESIQKKQNFKEVALDAFLPKSINYYHFNGSLTAPPCTEGVAWFVIEEPLEVSAKQLAEIKKRMKNSPNQRPVQPDYNTVIIKSSAEIR
>NZ_CP032908.1|WP_108374187.1|1428026_1429202_-|sugar-transporter
MMITKQSYQKFALMRVFVFSLSAFIFNTTEFVPVALLSDIAKSFEMESATVGLMITAYAWVVSLGSLPLMLLSAKIERKRLLLFLFALFILSHILSALAWNFWVLLISRMGIAFAHSIFWSITASLVIRVAPRNKKQQALGLLALGSSLAMILGLPLGRIIGQILDWRSTFGVIGGVATLIMLLMWKLLPHLPSRNAGTLASVPILMKRPLLVGIYLLVIMVISGHFTTYSYIEPFIIQISQFSPDITTLMLFVFGLAGVAGSFLFGRLYAKNSRKFIAFAMVLVICPQLLLFVFKNLEWVVFLQIFLWGIGITSLTIALQMRVLQLAPDATDVASAIFSGSYNVGIGSGALFGSIVIHQLGLGYIGFVGGALGLLALFWLRFITIKFKKT
>NZ_CP032908.1|WP_139535115.1|1426481_1427861_-|HP1184-family-multidrug-efflux-MATE-transporter
MLKKKIDLHKDSIRKLFFYYFIPLAFSMISLSTYSMIDGMFVGKKLGKEAIAAVNIAWPIFPGLIAYELLFGFGAASIVGYFLGQNKTHRARLVFSSVFYFVAISAFILSMALLPFSETIARFFGSNDALLSMSKRYIEIILMGAVFMVLHPLADVFVVNDKRPILAMVAMLIGSLANIFFNYWFIFVLEVGVQGSAIATVIGHAIGVLVLMQHFWFKKGQLYFIKRFSLSSVISSAKSGVPQSTAEFSASIMILLFNTAIMHTAGERFVSMYGIVMYNAIIFFTTLFAISQGIQPIASFSYGARNLERVKEVFVFGLKAAFCIGIVFYGAYYFLDEFLIKLYLQPSEQDPLFMQETKRAMNIYYVGYIFLGMTLLCAVFFQSIQRTKSSFIITLSHTLGFIIVLLPILSHFYGINGVWVTYPIAQFLAFLVALGVTYYEIKKGVFTTYKEKNPIAVKT
>NZ_CP032908.1|WP_097679352.1|1425304_1426456_-|cation:proton-antiporter
MHAEFFTFALIMLLIVMAPYMSRISRLPITVVEILFGSVGAYVGFIEPTKGFEIMSEIGFLFLMFLCGLEVEIYLFKKLGVSLLKRIFAYLLILYTLSFILTFSLNLEPIFMVIFPIISLGMIMTLVKDYRKEILWLDLVLKVGVIGELLSIFGLVVVDGVYSHGLGMDLIKDLGILIVFLILIIVAFQIFKTLFWWFPHLKLFVMPKSSQFNQDVRFSLMLFFSLVAIVVWLKIEMVLGAFLAGLVVSTFFPHKSELIHKLNDVGFGFFVPLFFIHVGSTLDLKLVFLNPHLILQGILIVIAMLSLHLITSTLLWHKYFKEAKHLFSFALGASMPLTFLVTTAAVGLKAQAISQNTYYALLMAAIFEGVLFTIAIKMLNKKA
>NZ_CP032908.1|WP_000312855.1|1424534_1425296_+|tRNA-2-thiocytidine(32)-synthetase-TtcA
MAYEISKKVLHIVGKTNATYKLIEEGDKILLGLSGGKDSIMLACILARMQKHAPFKFDFKAVTVHYGLGEDLKWLSDLCQEQGIEHEIIYTQIAATINEKRREKSSFCSFCSRLRRGTLYSKALEEGYNKVAIAHHLDDAVESFFMNFTYNGSLRSMPPIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNCPAKQPTSDKPPIARLATKNFLKEMQNLHPRFFDSLENAFNNVQANSFSDAKYLDA
>NZ_CP032908.1|WP_139535114.1|1423183_1424515_+|MFS-transporter
MFKKIFPLALVSSLRFLGLFIVLPVISLYADSFHSSSPLLIGLAVGGAYLTQIIFQTPMGILSDKIGRKVVVMVCLLLFLAGSLVCFMANDIITLVIGRFIQGMGALGGVVSAMVADEVKEEERTKAMAIMGAFIFISFTISMAIGPGVVAFFGGAKWLFLLTAILTLLSLLMLLKVKDAPKISYQIKNIKAYQPNSKALYLLYLSSFFEKAFMTLIFVLIPLALVNEFHKDESFLILVYVPGALLGVLSMGIASVMAEKYNKPKGVMLSGVLLFIVSYVCLFLADSSFLGKYLWLFIVGVAFFFIGFATLEPIMQSLASKFAKANEKGKVLGQFTTFGYLGSFVGGVSGGLSYHHLGVSNTSLIVVALGLIWGLSLFLLHNPSKQKNVYFPLDAYNEEQFETLGDKIIEWYVNISEEIIIVKYNSDHISEEEIIRLAQNFRK
>NZ_CP032908.1|WP_139535113.1|1421619_1422876_-|NupC/NupG-family-nucleoside-CNT-transporter
MIFSSLFSVVGMAVLFLIAWVFSGNKRAINYRTIISAFVIQVALGALALYVPLGREMLQGLASGIQSVISYGYEGVRFLFGNLAPNAKGDQGIGGFIFAINVLAIIIFFASLISLLYYLKIMPLFINLIGGALQRCLGTSKAESMSAAANIFVAHTEAPLVIKPYLKSMSDSEIFAVMCVGMASVAGPVLAGYASMGIPLPYLIAASFMSAPGGLLFAKIIYPQNETISSHADVSVEKHVNAIEAIANGASTGLNLALHVGAMLLAFVGMLALINGLLGVVGGFLGMEHLSLGLILGALLKPLAFMLGIPWSQAGIAGEIIGIKIALNEFVGYMQFLPYLGDNPPLILSEKTKAIITFALCGFANLSSVAMLIGGLGSLVPKKKDLIVRLALKAVLVGTLSNFMSATIAGLFIGLNAH
>NZ_CP032908.1|WP_139535112.1|1420366_1421608_-|phosphopentomutase
MQKRVVILLLDSFGIGASEDAKDFGDLGANTLGNIAKACFNNLADSNDRSGALKLPYLESLGLGLSALKAANELPLGFQSQPNLIGAYAYAQELSSAKDTISGHWEMMGAPVLFEWGYFKDKTHSFPKEILDEIMHKTKIKGYLGNCHASGTEIIKDLGEKHLETLYPIFYTSADSVFQIAAHEEKFGLDNLYALCEEVFQILEPLKIARVIARPFIGTNRESFKRTANRKDYAIKPHKKLLFETFIEEKQGEVISIGKIADIYAHVGITQKFKAGSLMELCDVTLERVKNAPNNSLIFTNFVHFDSDYGHRRDISGYANALEYFDARLKEVLDNLRENDLLILCADHGCDPSFKGTDHTREYIPVLFYHKDLQPAFLGKSDSFADIGQSIAHFLGLSPLDYGKNLLKFKGQP
>NZ_CP032908.1|WP_139535111.1|1419668_1420370_-|purine-nucleoside-phosphorylase
MTPHINAKIGDFYPQCLLCGDPLRVSYIAKKFLQDAKEITNVRNMLGFSGKYKGKGISLMGHGMGIASCTIYVTELIKTYQVKELLRIGTCGAISPKVGLKDIIMAMGASTDSKTNRVRFLNHDLSATPDFELSLRAYQTAKRLGIDLKVGNVFSSDFFYSFETHAFDLMAKYNHLAIEMEAAGLYATAMELSAKALCLCSVSDHLITKEALSPKERIESFDNMIILALEMMS
>NZ_CP032908.1|WP_139534781.1|1417284_1419210_-|Hop-family-adhesin-HopQ
MKKMKKTILLSLTLASSLLHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSDAYEQLSRLLTNDNGTNSKTSAQAINQAVNNLNERAKTLAGGTTNSPAYQATLLALRSVLGLWNSMGYAVICGGYTKSPGENNQKNFHYTDENGNGTTINCGGSTNSNGTHSSNGTNTLKADKNVSLSIEQYEKIHESYQILSKALKQAGLAPLNSKGEKLEAHVTTSKYQSDNQTKTTTSVIDTTNDAQNLLTQAQTIVNTLKDYCPMLIAKSSSGSSGGATTNTPSWQTAGGGKNSCETFGAEFSAASDMINNAQKIVQETQQLSANQPKNITQPHNLNLNTPSSLTALAQKMLKNAQSQAEILKLANQVESDFNKLSSGHLKDYIGKCDASAISSANMTMQNQKNNWGNGCAGVEETLSSLKTSAADFNNQTPQINQAQNLANTLIQELGNNPFRNMGMIASSTTNNGALNGLGVQVGYKQFFGEKKRWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGSDLLFNFINDKNTNFLGKNNQISFGLFGGIALAGTSWLNSQFVNLKTISNVYSAKVNTANFQFLFNLGLRTNLARPKKKDSHHAAQHGMELGVKIPTINTNYYSFLGTKLEYRRLYSVYLNYVFAY
>NZ_CP032908.1|WP_139535118.1|1431909_1432950_-|aspartate-semialdehyde-dehydrogenase
MKTYNVAIVGASGAVGQELIKGLENSFFPIKKFVPLASARSAGKKIRAFNKDYEILETTHEVFEKEKIDIAFFSAGGSVSEEFATSAAKTALVVDNTSFFRLDKKVPLVVPEINAKEIFNAPLNIIANPNCSTIQMTQILNPLHLHFKIKSVIVSTYQAVSGAGNKGIESLKNELKAALECLEKDPAIDLNQVLQAGAFPYPIAFNAIAHIDTFKENGYTKEELKMVHETHKIMGVDFPISATCVRVPVLRSHSESLSIAFEKEFDLKEVYEVLKNAPSVVVCDDPSHNLYPTPLKASHTDSVFIGRLRKDLFDKKTLHGFCVADQLRVGAATNALKIAMHYIKNA
>NZ_CP032908.1|WP_139535119.1|1432936_1434265_-|histidine--tRNA-ligase
MITPKVLSGFKDRLPKDAIQKAQLLSKVSVVFQSFGFVPIETPHLEYAEVLLPDASSDIQKEIYRFKDHGDRDVALRFDLTVPLARFVSLHHQTLGMPFKRYAIGNVFRGERAQKGRYREFTQCDFDFIGSESLVCDAEIIQVIIASLKALDLEDFCISINHRKILNGICEYFGVSQVNEALRIVDKLEKIGLNGVEEELKKECDLDLNTIKELLEMVQIKQNDLSHAEFFEKIAYLKDYNENLKKGIQDLERLYQLLGDLQISQNLYKIDFSIARGLGYYTGIVYETTLNEMKSLGSVCSGGRYDHLTKNFSKENLQGVGASIGIDRLIVALSEMQLLDERSTQAKVLIACMHEEYFSYANRLAESLRQSGIFSEVYPEAQKIKKPFSYANHRGHEFVAVIGEEEFKSETLSLKNMHSGMQLNCLSFLKALEIIGENDEDL
>NZ_CP032908.1|WP_139535120.1|1434326_1435376_+|lipopolysaccharide-heptosyltransferase-II
MSVNASKRMRILLRLPNWLGDGVMASSLFYTLKHHYHNAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATHKLAQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAITTAPKEYHQVEKYCFLFSQFLKKELDKKSVLPLKLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEKGHEIYFFGAKEDAIVSEEILKLIKGSLKNPLLFHNAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASAQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCAPCKKRVCPLKNAKNHLCMKSITPLEVLKATHTLLEKP
>NZ_CP032908.1|WP_000744170.1|1435574_1435793_-|hypothetical-protein
MKKQILTGVLLSVLAVSSAYAHKDKKDAKKPELSSQLVAHKDKKDAKKPELSSQLVAHKDKKDAKKPKNSVA
>NZ_CP032908.1|WP_139535122.1|1436017_1437007_+|aldo/keto-reductase
MQQRHLGPLKVGALALGCMGMTYGYGEVHDKKQMVKLIHKALELGINFFDTAEAYGEDNEKLLGEAIKPFKDKVVVASKFGIYYADPNDKYATMFLDSSPNRIKSAIEGSLKRLKVECIDLYYQHRMDTNTPIEEVAEVMQALIKEGKIKAWGMSEAGLSSIQKAHKICPLSALQSEYSLWWREPEKEILGFLEKEKIGFVAFSPLGKGFLGAKFEKNATFDSGDFRSVSPRFNQENLAKNYALVELIQDHAHAKGVTPAQLALSWILHTQKIIVPLFGTTKESRLIENIGALQVSWSQKELEIFQKELTAIKIEGARYPERINEMVNQ
>NZ_CP032908.1|WP_139535123.1|1437521_1439600_-|elongation-factor-G
MARKTPLNRIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITITSAATTCFWRDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYSVENQIKLRLKANPVPINIPIGAEDTFIGVIDLVQMKAIVWNNETMGAKYDVEEIPSDLLEKAKQYREKLVEAVAEQDEALMEKYLGGEELSVEEIKKGIKTGCLNMSLVPMLCGSSFKNKGVQTLLDAVIDYLPAPTEVVDIKGIDPKTEEEVFVKSSDDGEFAGLAFKIMTDPFVGQLTFVRVYRGKLESGSYVYNSTKDKKERVGRLLKMHSNKREDIKEVYAGEICAFVGLKDTLTGDTLCDEKNAVVLERMEFPEPVIHIAVEPKTKADQEKMGVALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEIGQPQVAFRETIRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPGSGYEFVNEISGGVIPKEYIPAVDKGIQEAMQNGVLAGYPVVDFKITLYDGSYHDVDSSEMAFKIAGSMAFKEASRAANPVLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVNAFVPLVEMFGYSTDLRSATQGRGTYSMEFDHYGEVPSNIAKEIVEKRKG
>NZ_CP032908.1|WP_001254357.1|1439611_1440079_-|30S-ribosomal-protein-S7
MRRRKAPVREVLGDPVYGNKVVTKFINKMMFDGKKSVAEKIIYKAFNKIEEKSGEKGIEVFEKALERVRPLVEVRSRRVGGATYQVPVEVRASRQQSLSIRWILEATRKRNERMMVDRLANELMDAASDKGAAFKKKEDVHKMAEANKAFAHYRW
>NZ_CP032908.1|WP_001142321.1|1440094_1440502_-|30S-ribosomal-protein-S12
MPTINQLIRKERKKVVKKTKSPALVECPQRRGVCTRVYTTTPKKPNSALRKVAKVRLTSKFEVISYIPGEGHNLQEHSIVLVRGGRVKDLPGVKYHIVRGALDTAGVNKRTVSRSKYGTKKAKATDKKATDNKKK
>NZ_CP032908.1|WP_139535124.1|1440590_1449263_-|DNA-directed-RNA-polymerase-subunit-beta/beta'
MSKKIPLKNRLRADFTKTPTDLEVPNLLLLQRDSYDSFLYSKDGKESGIEKVFKSIFPIQDEHNRITLEYAGCEFGKSKYTVREAMERGITYSIPLKIKVRLILWEKDTKSGEKNGIKDIKEQSIFIREIPLMTERTSFIINGVERVVVNQLHRSPGVIFKEEESSTSLNKLIYTGQIIPDRGSWLYFEYDSKDVLYARINKRRKVPVTILFRAMDYQKQDIIKMFYPLVKVRYENDKYLIPFASLDANQRMEFDLKDPQGKVILLAGKKLTSRKIKELKENHLEWVEYPMDILINRHLAEPVMVGKEVILDMLTQLDKNRLEKIHDLGVQEFVIINDLALGHDASIIHSFLADYESLKLLKQTEKIDDENALAAIRIHKVMKPGDPVTTEVAKQFVKKLFFDPERYDLTMVGRMKMNHKLGLHVPDYITTLTHEDIITTVKYLMKIKNNQGKIDDRDHLGNRRIRAVGELLANELHSGLVKMQKTIKDKLTTMSGAFDSLMPHDLVNSKMITSTIMEFFMGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKDRVGFEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNDLGFIEAPYKKVVDGKVVGETIYLTAIQEDSHIIAPASTPIDEEGNILGDLIETRVEGEIVLNEKSKVTLMDLSSSMLVGVAASLIPFLEHDDANRALMGTNMQRQAVPLLRSDAPIVGTGIEKIIARDSWGAIKANRAGVVEKIDSKNIYILGEGKEEAYIDAYSLQKNLRTNQNTSFNQVPIVKVGDKVGAGQIIADGPSMDRGELALGKNVRVAFMPWNGYNFEDAIVVSERITKDDVFTSTHIYEKEVDARELKHGAEEFTADIPDVKEEALAHLDESGIVKVGTYVSAGMILVGKTSPKGEIKSTPEERLLRAIFGDKAGHVVNKSLYCPPSLEGTVIDVKVFTKKGYEKDARVLSAYEEEKAKLDMEHFDRLTMLNREELLRVSSLLSQAILEEPFSHNGKDYKEGDQIPKEEIASINRFTLASLVKKYSKEVQNHYEITKNNFLEQKKVLGEEHEEKLSILEKDDILPNGVIKKVKLYIATKRKLKVGDKMAGRHGNKGIVSNIVPVADMPYTADGEPMDIVLNPLGVPSRMNIGQILEMHLGLVGKEFGKQIARMLEDKTKDFAKELRAKMLEIANAINEKDPLTIHVLESCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRERVNVGYMYMIKLHHLVDEKVHARSTGPYSLVTHQPVGGKALFGGQRFGEMEVWALEAYGAAHTLKEMLTIKSDDIRGRENAYRAIAKGEQVGESEIPETFYVLTKELQSLALDINIFGDDVDEDGAPKPIVIKEDDRPKDFSSFQLTLASPEKIHSWSYGEVKKPETINYRTLKPERDGLFCMKIFGPTKDYECLCGKYKKPRFKDIGTCEKCGVAITHSKVRRFRMGHIELATPVAHIWYVNSLPSRIGTLLGVKMKDLERVLYYEAYIVKEPGEAAYDNEGAKLVMKYDILNEEQYQNISRRYEDRGFVAQMGGEAIKDLLEEIDLITLLQSLKEEVKDTNSDAKKKKLIKRLKVVESFLNSGNRPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEVIVRNEKRMLQEAVDVLFDNGRSTNAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPNLKMDECGLPKNMALELFKPHLLSKLEERGYATTLKQAKRMIEQKSNEVWECLQEITEGYPVLLNRAPTLHKQSIQAFHPKLIDGKAIQLHPLVCSAFNADFDGDQMAVHVPLSQEAIAECKVLMLSSMNILLPASGKAVAIPSQDMILGLYYLSLEKSGVKGEHKLFSSVNEIITAIDTKELDIHAKIRVLDQGNIIATSAGRMIIKSILPDFIPTDLWNRPMKKKDIGVLVDYVHKVGGIGITATFLDNLKTLGFRYATKAGISISMEDIITPKDKQKMVEKAKVEVKKIQQQYDQGLLTDQERYNKIIDTWTEVNDRMSKEMMTAIAQDKEGFNSIYMMADSGARGSAAQIRQLSAMRGLMTKPDGSIIETPIISNFKEGLNVLEYFNSTHGARKGLADTALKTANAGYLTRKLIDVSQNVKVVSDDCGTHEGIEITDIAVGSELIEPLEERIFGRVLLEDVIDPITNEILLYADTLIDEEGAKKVVEAGIKSITIRTPVTCKAPKGVCAKCYGLNLGEGKMSYPGEAVGVVAAQSIGEPGTQLTLRTFHVGGTASRSQDEREIVASKEGFVRFYNLRTYTNKEGKNIIANRRNASILVVEPKIKAPFDGELRIETVYEEVVVSVKNGDQEAKFVLRRSDIVKPSELAGVGGKIEGKVYLPYASGHKVHKGGSIADIIQEGWNVPNRIPYASELLVKDNDPIAQDVYAKEKGAIKYYVLEANHLERTHGIKKGDMVSEKGLFAVVADDNGREAARHYIARGSEILIDDNSEVSANSVISKPTTNTFKTIATWDPYNTPIIADFKGKVSFVDVIAGVTVAEKEDENTGITSLVVNDYIPSGYKPSLFLEGANGEEARYFLEPKTSIAISDGSSVEQAEVLAKIPKATVKSRDITGGLPRVSELFEARKPKPKDVAILSEVDGIVSFGKPIRNKEHIIVTSKDGRSMDYFVDKGKQILVHADEFVHAGEAMTDGVVSSHDILRISGEKELYKYIVSEVQQVYRRQGVSIADKHIEIIVSQMLRQVRILDSGDSKFIEGDLVSKKLFKEENARVIALKGEPAIAEPVLLGITRAAIGSDSIISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGTGMYKNKKIVLRALEDNSKF
>NZ_CP032908.1|WP_001018219.1|1449484_1449862_-|50S-ribosomal-protein-L7/L12
MAISKEEVLEYIGSLSVLELAELVKMFEEKFGVSATPTVVAGAAVAGGAAAESEEKTEFNVILADSGAEKIKVIKVVREITGLGLKEAKDATEKTPHVLKEGVNKEEAETIKKKLEEVGAKVEVK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP032908_4	4.1\|1431058\|39\|NZ_CP032908\|CRISPRCasFinder	1431058-1431096	39	NZ_CP032908.1	289184-289222	0	1.0
NZ_CP032908_2	2.2\|1160411\|20\|NZ_CP032908\|CRISPRCasFinder	1160411-1160430	20	NZ_CP032908.1	1160456-1160475	2	0.9

1. spacer 4.1|1431058|39|NZ_CP032908|CRISPRCasFinder matches to position: 289184-289222, mismatch: 0, identity: 1.0

cccactcttgttcgctctatccctagcgttttcagcttc	CRISPR spacer
cccactcttgttcgctctatccctagcgttttcagcttc	Protospacer
***************************************

2. spacer 2.2|1160411|20|NZ_CP032908|CRISPRCasFinder matches to position: 1160456-1160475, mismatch: 2, identity: 0.9

ccccttgatcagaaactctc	CRISPR spacer
cccattgaacagaaactctc	Protospacer
*** **** ***********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP032908_3	3.3\|1181828\|27\|NZ_CP032908\|CRISPRCasFinder	1181828-1181854	27	NZ_CP050068	Klebsiella aerogenes strain 035 plasmid p35, complete sequence	362427-362453	5	0.815
NZ_CP032908_3	3.3\|1181828\|27\|NZ_CP032908\|CRISPRCasFinder	1181828-1181854	27	NZ_CP020848	Klebsiella variicola strain KPN1481 plasmid pKPN1481-1, complete sequence	115214-115240	5	0.815
NZ_CP032908_3	3.3\|1181828\|27\|NZ_CP032908\|CRISPRCasFinder	1181828-1181854	27	NZ_CP043927	Klebsiella quasipneumoniae subsp. quasipneumoniae strain M17277 plasmid p17277A_477, complete sequence	129032-129058	5	0.815
NZ_CP032908_3	3.3\|1181828\|27\|NZ_CP032908\|CRISPRCasFinder	1181828-1181854	27	NZ_CP021699	Klebsiella pneumoniae strain AR_0158 plasmid tig00000727, complete sequence	8350-8376	5	0.815
NZ_CP032908_3	3.2\|1181771\|30\|NZ_CP032908\|CRISPRCasFinder	1181771-1181800	30	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	816052-816081	8	0.733

1. spacer 3.3|1181828|27|NZ_CP032908|CRISPRCasFinder matches to NZ_CP050068 (Klebsiella aerogenes strain 035 plasmid p35, complete sequence) position: , mismatch: 5, identity: 0.815

ggcaacgccagctttgataacgatact	CRISPR spacer
gtcagcgccagctttgatcacgatatc	Protospacer
* **.************* ******..

2. spacer 3.3|1181828|27|NZ_CP032908|CRISPRCasFinder matches to NZ_CP020848 (Klebsiella variicola strain KPN1481 plasmid pKPN1481-1, complete sequence) position: , mismatch: 5, identity: 0.815

ggcaacgccagctttgataacgatact	CRISPR spacer
gtcagcgccagctttgatcacgatatc	Protospacer
* **.************* ******..

3. spacer 3.3|1181828|27|NZ_CP032908|CRISPRCasFinder matches to NZ_CP043927 (Klebsiella quasipneumoniae subsp. quasipneumoniae strain M17277 plasmid p17277A_477, complete sequence) position: , mismatch: 5, identity: 0.815

ggcaacgccagctttgataacgatact	CRISPR spacer
gtcagcgccagctttgatcacgatatc	Protospacer
* **.************* ******..

4. spacer 3.3|1181828|27|NZ_CP032908|CRISPRCasFinder matches to NZ_CP021699 (Klebsiella pneumoniae strain AR_0158 plasmid tig00000727, complete sequence) position: , mismatch: 5, identity: 0.815

ggcaacgccagctttgataacgatact	CRISPR spacer
gtcagcgccagctttgatcacgatatc	Protospacer
* **.************* ******..

5. spacer 3.2|1181771|30|NZ_CP032908|CRISPRCasFinder matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.733

agcgctcaatctgcttttaatcatagcgct	CRISPR spacer
cgcgctcaatctgcttttcaacatcaaggc	Protospacer
 ***************** * *** . * .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

57925 : 68837

Bacillus_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_139533970.1\|57925_59974_+	DNA helicase UvrD	A7KV33	Bacillus_phage	7.7e-90	34.7
WP_139533971.1\|59970_60627_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA
WP_000780111.1\|60636_61200_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_001169242.1\|61199_61673_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	3.3e-28	45.5
WP_139533972.1\|61674_62250_+	dTMP kinase	Q2XUX0	environmental_halophage	3.4e-11	39.4
WP_139533973.1\|62237_62813_+	ComF family protein	NA	NA	NA	NA
WP_139533974.1\|62846_64886_+	N-6 DNA methylase	A0A2H4JBT5	uncultured_Caudovirales_phage	2.0e-210	58.1
WP_139533975.1\|64914_66102_+	restriction endonuclease subunit S	A0A1W6JNN3	Staphylococcus_phage	1.9e-08	22.6
WP_139533976.1\|66164_68837_+	DNA polymerase I	A0A218MKQ4	uncultured_virus	2.9e-60	33.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP032908

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection