CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP032912	Helicobacter pylori strain 13-A-EK8 chromosome, complete genome	3 crisprs	cas14j,cas3,DEDDh	0	1	2	0

1. NZ_CP032912

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP032912_1

• CRISPR_ID: NZ_CP032912_1
• CRISPR_location: 418927-419012
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP032912_1

Consensus_repeat	Method
GTTCTTGAACCACTACTTCTCGCATG	CRISPRCasFinder

spacers of NZ_CP032912_1

>1.1|418953|34|NZ_CP032912|CRISPRCasFinder
CCCATGCAGAGATCAAAGAAAACTCCCTTGAAGC

CRISPR arrays and Neighbor proteins around NZ_CP032912_1

CRISPR arrays

The CRISPR arrays of NZ_CP032912_1

>merge|NZ_CP032912|1|418927-419012|CRISPRCasFinder
GTTCTTGAACCACTACTTCTCGCATGCCCATGCAGAGATCAAAGAAAACTCCCTTGAAGCGTTCTTGAACCACTACTTCTCGCATG

>NZ_CP032912|1|1|418927-419012|CRISPRCasFinder
GTTCTTGAACCACTACTTCTCGCATG	CCCATGCAGAGATCAAAGAAAACTCCCTTGAAGC
GTTCTTGAACCACTACTTCTCGCATG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP032912.1|WP_001126887.1|420399_421410_-|glucokinase	unknown	unknown	gnl|CDD|129832
NZ_CP032912.1|WP_139522593.1|407089_407884_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP032912.1|WP_139522597.1|416391_417699_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP032912.1|WP_139522594.1|407953_409930_+|excinuclease-ABC-subunit-B	unknown	unknown	gnl|CDD|235395
NZ_CP032912.1|WP_139522595.1|409940_410774_-|outer-membrane-beta-barrel-protein	unknown	unknown	gnl|CDD|280099
NZ_CP032912.1|WP_000486467.1|414872_415433_-|pyruvate-flavodoxin-oxidoreductase-subunit-gamma	unknown	unknown	gnl|CDD|180284
NZ_CP032912.1|WP_100965237.1|415722_416385_+|outer-membrane-protein	unknown	unknown	gnl|CDD|280099
NZ_CP032912.1|WP_139522601.1|422090_423368_-|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl|CDD|223441
NZ_CP032912.1|WP_139522596.1|410842_412165_-|adenylosuccinate-lyase	unknown	unknown	gnl|CDD|181437
NZ_CP032912.1|WP_000656174.1|414464_414857_-|4Fe-4S-binding-protein	unknown	unknown	gnl|CDD|236596
NZ_CP032912.1|WP_000238160.1|412274_413219_-|pyruvate-ferredoxin-oxidoreductase-subunit-beta	unknown	unknown	gnl|CDD|239471
NZ_CP032912.1|WP_139522599.1|419190_420237_-|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl|CDD|176186
NZ_CP032912.1|WP_139522604.1|427048_427810_-|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl|CDD|187604
NZ_CP032912.1|WP_139522606.1|430077_431112_+|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl|CDD|273487
NZ_CP032912.1|WP_139522605.1|427827_429363_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP032912.1|WP_139522602.1|423433_425269_+|phosphogluconate-dehydratase	unknown	unknown	gnl|CDD|130264
NZ_CP032912.1|WP_139522603.1|425279_425900_+|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	unknown	unknown	gnl|CDD|273490
NZ_CP032912.1|WP_139522600.1|421396_422080_-|6-phosphogluconolactonase	unknown	unknown	gnl|CDD|273494
NZ_CP032912.1|WP_108288726.1|425974_426847_+|Sel1-like-repeat-protein-HcpC	unknown	unknown	gnl|CDD|223861
NZ_CP032912.1|WP_000124344.1|413231_414455_-|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha	unknown	unknown	gnl|CDD|181999

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP032912.1|WP_001126887.1|420399_421410_-|glucokinase	gnl|CDD|129832	TIGR00749, Glucokinase_Glucose_kinase., glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models. [Energy metabolism, Glycolysis/gluconeogenesis].	0
NZ_CP032912.1|WP_139522602.1|423433_425269_+|phosphogluconate-dehydratase	gnl|CDD|130264	TIGR01196, Phosphogluconate_dehydratase, 6-phosphogluconate dehydratase. A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This model includes mocB above the trusted cutoff, although the designation is somewhat tenuous. [Energy metabolism, Entner-Doudoroff].	0
NZ_CP032912.1|WP_000656174.1|414464_414857_-|4Fe-4S-binding-protein	gnl|CDD|236596	PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta; Reviewed.	5.72644e-84
NZ_CP032912.1|WP_139522594.1|407953_409930_+|excinuclease-ABC-subunit-B	gnl|CDD|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP032912.1|WP_139522595.1|409940_410774_-|outer-membrane-beta-barrel-protein	gnl|CDD|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	4.6349e-35
NZ_CP032912.1|WP_000486467.1|414872_415433_-|pyruvate-flavodoxin-oxidoreductase-subunit-gamma	gnl|CDD|180284	PRK05844, PRK05844, pyruvate flavodoxin oxidoreductase subunit gamma; Validated.	4.6316e-128
NZ_CP032912.1|WP_100965237.1|415722_416385_+|outer-membrane-protein	gnl|CDD|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	3.45945e-36
NZ_CP032912.1|WP_139522601.1|422090_423368_-|glucose-6-phosphate-dehydrogenase	gnl|CDD|223441	COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism].	0
NZ_CP032912.1|WP_139522596.1|410842_412165_-|adenylosuccinate-lyase	gnl|CDD|181437	PRK08470, PRK08470, adenylosuccinate lyase; Provisional.	0
NZ_CP032912.1|WP_000238160.1|412274_413219_-|pyruvate-ferredoxin-oxidoreductase-subunit-beta	gnl|CDD|239471	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.	7.6299e-136
NZ_CP032912.1|WP_139522599.1|419190_420237_-|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl|CDD|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.91157e-161
NZ_CP032912.1|WP_139522604.1|427048_427810_-|SDR-family-NAD(P)-dependent-oxidoreductase	gnl|CDD|187604	cd05346, SDR_c5, classical (c) SDR, subgroup 5. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.73299e-145
NZ_CP032912.1|WP_139522606.1|430077_431112_+|UDP-glucose-4-epimerase-GalE	gnl|CDD|273487	TIGR01179, UDP-glucose_4-epimerase, UDP-glucose-4-epimerase GalE. Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described by a separate model. [Energy metabolism, Sugars].	0
NZ_CP032912.1|WP_139522603.1|425279_425900_+|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	gnl|CDD|273490	TIGR01182, KHG/KDPG_aldolase_., Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida [Amino acid biosynthesis, Glutamate family, Energy metabolism, Entner-Doudoroff].	8.99974e-111
NZ_CP032912.1|WP_139522600.1|421396_422080_-|6-phosphogluconolactonase	gnl|CDD|273494	TIGR01198, 6-phosphogluconolactonase_6PGL., 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with [Energy metabolism, Pentose phosphate pathway].	3.97701e-90
NZ_CP032912.1|WP_108288726.1|425974_426847_+|Sel1-like-repeat-protein-HcpC	gnl|CDD|223861	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].	4.48145e-48
NZ_CP032912.1|WP_000124344.1|413231_414455_-|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha	gnl|CDD|181999	PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha.	0

Protein sequences

>NZ_CP032912.1|WP_139522597.1|416391_417699_-|hypothetical-protein
MIFLKKSLYALLISSFSIPPLVKAASFVYDLKFMSFNFNLVAPNNNPYWNSLTKMQGRLMPQIGVQLDKRQALMFGAWFIQNLHTHYSYFPYSWGVTMYYQYIGKNLRFFLGIVPRSYQIGHYPLSAFKKLFWFIDPTFRGGAFQFKPAYDPNRWWNGWFEGVVDWYGGRNWNNQPKKKNYDFDQFLYFVSSEFQFLKGCLGLGGQLVIFHNASSHSMGDNYPYGGNSYLKPGDITPQWPNGYPYFSQKNNPQGGEIGKYSNPTILDRVYYHAYLKADFKNLMPYMDNIFMTFGTQSSQTHYCVRYASECRNAQFYNSFGGEFYAQAQYKGFGIFNRYYFSNKPQMHFYATYGQSLYTGLPWYRAPNFDMIGLYYVYKNKWISVRADAFFNFLGGGDGYHLYGKGGKWITTYQQFLTLTIDTRELIDFVKSKTSK
>NZ_CP032912.1|WP_100965237.1|415722_416385_+|outer-membrane-protein
MDKTMVKILMGMALLSSLQAAEAELDEKSKKPKFADRNTFYLGVGYQLSAINTSFSTESVDKSYFMTGNGFGVVLGGKFVAKTQAVEHVGFRYGLFYDQTFSSHKSYISTYGLELSGLWDAFNSPKMFLGLEFGLGIAGATYMPGGAMHGIIAQNLGKENSLFQLLVKVGFRFGFFHNEITFGLKFPFIPNKRTEIVDGLSATTLWHRLPVAYFNYIYNF
>NZ_CP032912.1|WP_000486467.1|414872_415433_-|pyruvate-flavodoxin-oxidoreductase-subunit-gamma
MFQIRWHARAGQGAITGAKGLADVISKTGKEVQAFASYGSAKRGAAMMAYNRVDDEPILNHERFMQPDYVLVIDPGLVFIENIFANEKEDTTYIITSYLNKEELFEKKPELKTRKVFLVDCLKISMETLKRPIPNTPMLGALMKVSGMLEIGAFKEAFKKVLGKKLTQEVIDANMLAIQRAYEEVQ
>NZ_CP032912.1|WP_000656174.1|414464_414857_-|4Fe-4S-binding-protein
MKDWNEFEMGAVLFPFEKNAQSEMEKHNDERHYTEQSYFTTSVAHWRVAKPVHNNNICINCFNCWVYCPDAAILSREGKLKGVDYSHCKGCGVCVDVCPTNPKSLWMFEEQIEPATALTQWPQKQEKKKS
>NZ_CP032912.1|WP_000124344.1|413231_414455_-|2-oxoacid:ferredoxin-oxidoreductase-subunit-alpha
MARSIELQEIEVWDGNTASSNALRQAQIDVIAAYPITPSTPIVQNYGSFKDNGYVDGEFVLVESEHAAMSACVGAAAAGGRVSTATSSQGLALMVEVLYQASGMRLPIVLNLVNRALAAPLNIHGDHSDMYLSRDSGWISLCTCNPQEAYDFTLMAFRIAEHQKVRVPTIVNQDGFLCSHTVQNVRPLSDAVAYQFVGEYQTKHSLLDFDKPVSYGAQAEEEWHYEHKAQLHHAIMSASSVIEEVFNDFAKLTGRQYHLTKTFQLEDAEIAIFALGTTYESAIVAAKEMRKKGIKAGVATIHSLRPFPYERLGQDLKNLKALAILDKSSPAGAMGAMFNEVTSAVYQTQGTKHPVVSNYIYGLGERDMTIAHLCEIFEEINEDALKGTLTHPTQQFVGLHGPKMSFF
>NZ_CP032912.1|WP_000238160.1|412274_413219_-|pyruvate-ferredoxin-oxidoreductase-subunit-beta
MVKEVKTLKGFSQSAEKFQGSHLLCPGCGHGIIVREVLNAVDGPIVLGNSTGCLEVCSAVYPHTSWDVPWIHIGFENGSTAISGVEAMYKALVNKGRYQGQKPKFVAFGGDGASYDIGLQFISGCMERGHDMTYICLDNENYANTGGQRSGSTPLGASTSTTPAGSVSFGKKEKKKDIVNIMASHGVPYVAQLSPNKWKDMNKKIKTALDTEGPCFINALSPCTTEWKFESNKTIELADMAVDSLMFPLFEIFNGRELKITYRPRNIIPVRDYLGAQKRFKHLFKKENEHIIEELQKDVNERWEYLQRREEAKV
>NZ_CP032912.1|WP_139522596.1|410842_412165_-|adenylosuccinate-lyase
MLERYANEEMKALWNEQTKFETYLEVEKAVVRAWNKLGQIQDSDCEKICSKAAFNLDRIKEIEKTTKHDLIAFTTCVAESLGEESRFFHYGITSSDCIDTAMALLMTKSLKLIQKGVQNLYETLKNRALEYKDTLMVGRSHGVFGEPITFGLVLALFADEIKRHLKALDLTMEFISVGAISGAMGNFAHAPLELEELACEFLGLKTANISNQVIQRDRYARLACDLALLASSCEKIAVNIRHLQRSEVYEVEEAFSTGQKGSSAMPHKRNPILSENITGLCRVIRSFTTPMLENVALWHERDMSHSSVERFALPDLFITSDFMLSRLNSVIENLVVYPKNMLKNLALSGGLVFSQRVLLELPKKGLSREESYSIVQENAMKIWEVLQQGAFKNADENLFLNALLNDERLKKYLSEDEIKACFDYSYYTKNVGAIFKRVFE
>NZ_CP032912.1|WP_139522595.1|409940_410774_-|outer-membrane-beta-barrel-protein
MKRALCLILGLFCALNAKGFKDVLTKGDYTFFNKKVVSPIKRYADRSVFYLGIGYQLGSIQYNSSNLNLSQQFNKSQIVFSDGLSPVFKNSYVSNGLGVQVGYKWVGKHEETKWFGFRWGLFYDLSASLYGQKESQSIIISTYGTYMDLLLNAYNGDKFFAGFNLGIAFAGVYGKLSDALLYQALLLDTFGGKVDPNGFQFLVNLGVRLGSKRNQFGFGIKIPTYYFNHYYSMNNISNNSEDVLKVLRFLEYGINSLLYQVDFRRNYSVYFNYTYSF
>NZ_CP032912.1|WP_139522594.1|407953_409930_+|excinuclease-ABC-subunit-B
MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPALIMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLERLRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGYSRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIRRLDSVMLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATGVCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRKSVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKNNVAEQIIRPTGLLDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHSEIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQTMGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRALEEELKLRDDEIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQLRTL
>NZ_CP032912.1|WP_139522593.1|407089_407884_+|hypothetical-protein
MNYPNLPNSALEITEQPEVKEITNELLKQLQNALKSNALFTEQVELSLKGIVRILEVLLSLDFFKNANEIDSSLRNSIEWLSNAGESLKLKMKEYEGFFSDFNTSMHTNEQEVTSILNANTENIKSEIKKLENQLIETTTKLLTSYQIFLNQARENATNQINTNKTQAITNINEAKTSANNEINTNKTASLEAIKEAKTTANNEISNNQTQAINNINEAKVSATNQITANQTQAINNIKEAIGQPKEQANNEISGTKNQSLSKH
>NZ_CP032912.1|WP_139522599.1|419190_420237_-|alcohol-dehydrogenase-catalytic-domain-containing-protein
MRVPSKGFAIFSKDGHFKPHDFSRHAVGPKDVLIDILYAGICHSDVHSAYSEWKEGIYPMVPGHEIAGVIKEVGKEVKKFKVGDVVGVGCFVNSCKTCKPCKEHQEQFCTKVVFTYDCLDSFHGNEPHMGGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNDHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYDLKDYLKLLTYSGELALVGLPPVEVAPALNVFEFIHLGNRKVYGSLIGGIKETQEMMDFSIKHNIYPEVDLILGKDIDTAYHNLTHGKAKFRYVIDMKKSFD
>NZ_CP032912.1|WP_001126887.1|420399_421410_-|glucokinase
MPKTETYPRLLADIGGTNARFGLEVAPRQIECIEVLRCEDFESLSDAVRFYLSKCKESLKLHPIYGSFAVATPIMGDFVQMTNNHWTFSIETTRQCLTLKKLLVINDFVAQAYAISAMQENDLAQIGGIKCEINAPKAILGPGTGLGVSTLIQNSDGSLKVLPGEGGHVSFAPFDDLEILVWQYARSKFNHVSAERFLSGSGLVLIYEALSKRKGLEKVAKLSKAELTPQIISERALNGDYPICRLTLDTFCSMLGTLAADVALTLGARGGVYLCGGIIPRFIDYFKTSPFRARFETKGRMGAFLASIPVHVVLKKTPGLDGAGIALENYLLHDKI
>NZ_CP032912.1|WP_139522600.1|421396_422080_-|6-phosphogluconolactonase
MGYQLFEFENLEDCHKALIERFKEFFNATLKKHHQVSIAFSGGRSPISLLQKLSVLNLKWHECLVSLVDERIIDTSHKDSNTKLLHDYLLQNNALKASFIPLLPEKISSDTNALFHFANQHFKQPHLAILGMGTDGHTASLFPETSAFLNEEKENIVLVKPANAPYERLSMSVNALENCEKLFLSISGVEKREVLEKALKENAPYSLPIARILHSKKVTTEVFYAKN
>NZ_CP032912.1|WP_139522601.1|422090_423368_-|glucose-6-phosphate-dehydrogenase
MLDFDLVLFGATGDLAMRKLFVSLYEIYTHYGFKKDSKIIASGRKELSNEEFLTLLCEKTQLHSREKGEEFLAHISYFCVRLDNPKDFEELSKIATKNKPLIFYFSISPSFFATTAQHLAKNALNHANTRLILEKPLGHDLKTCKEIFQSISAFFKEEQIFRIDHYLGKKGVQNILELRLNNPILNILWDQISAVEICVYETLGVEERGEFYDKIGALRDMVQNHLLQVLSLIATDLPNDLKDLRKEKIKVLKTLQPPKDFKKQVIRAQYQGYRDENKVNKESQTETFVAIKAFLDTPKFKGVPFYLKHAKKMPHNQASVKIHFNAVNTLEFFLSQDKITLTLKDHQNPLILETHNKQEFLQPYAKLLYDAIQNNHNNFAHQLELEASWVFIDTLIEGFMNNATPLYSYESHNLNELEFLKPLYQ
>NZ_CP032912.1|WP_139522602.1|423433_425269_+|phosphogluconate-dehydratase
MPKHSLEQIKEKITERSKKTRELYLENIFNPKNQPKIESLGCANIAHVTASMPEHLKMPLGSHKRKHFAIITAYNDMLSAHQPFKNYPDLIKKELQEHNAYASVASGVPAMCDGITQGYDGMELSLFSRDVIALSTAVGLSHNVFDGAFFLGVCDKIVPGLLIGALSFGNLASVFVPSGPMVSGIENYKKAKARQDFALGKINREELLKVEMQSYHDVGTCTFYGTANSNQMMMEFMGLHVANSSFINPNNPLRKVLVEESAKRLASGKVLPLAKLIDEKSILNALIGLMATGGSTNHTLHLIAIARSCGVILNWDDFDAVSNLIPLLAKVYPNGSADVNAFEACGGLAFVIKELLKEGLLFEDTHTIMDTETQKGMQNYTKIPFLENDQLVYKDAVNHSLNTDILRPVSEPFAANGGLKILKGNLGRAVIKISAIKDEHRKVKARAIVFKTQSEFLERFKNKELERDFVAVLPFQGPKSNGMPELHKLTTNLGALQDMGYKVALVTDGRMSGASGKVPSAIHLSPEGALNGAIIKIKDGDWIELDAPNNALNVLEKDFEKRGINPLFLEILENLEKPTFGLGRELFTSLRLNANTAEEGGMSFGIQGIKI
>NZ_CP032912.1|WP_139522603.1|425279_425900_+|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase
MQDKIIEVLQISPIVPVVVIENIKDAVPLAQSLIEGGIPIIEVTLRSSCALEAIELIAKNVPKMHVGAGTILNPTQLEQAQNRGAEFLISPGLTIELLEHAKKKDMPLIPGVSSSSEVMQALELGYSALKFFPAEYCGGVKLLNAFNGPFKGVKFCPTGGISADNMRSYLNLENVLCVGGSWLTPKDLIKNKEWDKITEICKRVLA
>NZ_CP032912.1|WP_108288726.1|425974_426847_+|Sel1-like-repeat-protein-HcpC
MLENVKKSLFRVLCLGALCLGGLMAEQDPKELVGLGAKSYKEQDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGDGVAKNFKEALARYSKACEMQNGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDLLKQLKIKV
>NZ_CP032912.1|WP_139522604.1|427048_427810_-|SDR-family-NAD(P)-dependent-oxidoreductase
MAHILVSGATSGFGLEIAKAFLQKSHVVFGTGRRKENLQELQLAYPKRFIPLCFDLQNKLETKRAIETIFSMTDRIDALINNAGLALGLNKAYECELDDWEIMIDTNIKGLLHLTRLILPSMIEHNHGTIINLGSIAGTYPYPGGNVYGASKAFVKQFSLNLRADLAGTNIRVSNVEPGLCGETEFSMVRFKGDKIKAQSVYENTLYLKPQDIANIVLWIYEQPLHVNINRIEIMPTSQTFAPLPTYKTLKGF
>NZ_CP032912.1|WP_139522605.1|427827_429363_-|hypothetical-protein
MKKFLYTILALLLIGLLTIYLILFTEWGNKIIASYIEKKINPNERYLSVKTFKLRFNSLDFKAQANDDSTLILKGDFSLLKQSVDLNYHIDIKDLRSFKEWIPYPLRGTIITSGNIKGHRKALMIQGVSNVAQSHTAYNALLDDFKLSHLSLNAQDANLEDLLYLINRPAYANAKVSLQADFNSLKPLEGHLILTANNALINNALINQMFHLNLKDTLVFNLSHSSDFKEDKAISDTTLTSPLVNFTALKSEYLFSILKLNAPYTLEIPNLAKLQNMINHPLKGSLTLKGTIEQSPKLLKISGHSNLLDGTLDFTLLNKDLKARFSNISTLKALDLFHYPKFFQSVADANLDYDLNSKQGVLKARLKNARFLKNAFSDFLYSISKFDITKEIYNDVNLVSQINQQRLLSSLSLKSPKTQLKIHNGLLDLNTKQMDMLMDAEILKFIFKMKLQGNMHQPKFSLILNEKAIQQNLQQGLKEILKNDTLKKGLDHLFKDDKLKEKLEKGLKGLF
>NZ_CP032912.1|WP_139522606.1|430077_431112_+|UDP-glucose-4-epimerase-GalE
MALLFTGACGYIGSHTARAFLEKTKENIIIVDDLSTGFLEHLKALEHYYPNRVVFVQANLNETHKLDAFLNKQQLKDSIEAILHFGAKISVEESTRLPLEYYTNNTLNTLELVKLCLKHAIKRFIFSSTAVVYGESDFSLNEESPLNPINPYGASKMMSERILLDASKITDFKCVILRYFNVAGACMHNDYTTTYTLGQRTLNATHLIKIACECAVGKRKKMGIFGTNYPTRDGTCIRDYIHVDDLANAHLASYQTLLEKNKSEIYNVGYNQGHSVKEVIKKVKEISNNDFLVEILDKRQGDPASLIANNAKILQNTPFKPLYNNLDTIIKSALDWEEHLLRFQ

Crispr_ID: NZ_CP032912_2

• CRISPR_ID: NZ_CP032912_2
• CRISPR_location: 636941-637083
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NZ_CP032912_2

Consensus_repeat	Method
TTTAATGGCGGATCGTTTAATTT	CRISPRCasFinder

spacers of NZ_CP032912_2

>2.1|636964|25|NZ_CP032912|CRISPRCasFinder
CAACCACGCAGAGCAGACAGACGCT
>2.2|637012|49|NZ_CP032912|CRISPRCasFinder
CGGATCGTTTAATTTTAACGCCAAGCAAGTGAATTTTAGTGGGAACTCG

CRISPR arrays and Neighbor proteins around NZ_CP032912_2

CRISPR arrays

The CRISPR arrays of NZ_CP032912_2

>merge|NZ_CP032912|2|636941-637083|CRISPRCasFinder
TTTAATGGCGGATCGTTTAATTTCAACCACGCAGAGCAGACAGACGCTTTTAATAACAACTCGTTTAATGGCGGATCGTTTAATTTTAACGCCAAGCAAGTGAATTTTAGTGGGAACTCGTTCAATGGGGGCGAGTTTAATTT

>NZ_CP032912|2|2|636941-637083|CRISPRCasFinder
TTTAATGGCGGATCGTTTAATTT	CAACCACGCAGAGCAGACAGACGCT
TTTAATAACAACTCGTTTAATGG	CGGATCGTTTAATTTTAACGCCAAGCAAGTGAATTTTAGTGGGAACTCG
TTCAATGGGGGCGAGTTTAATTT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP032912.1|WP_139522735.1|648678_649620_+|response-regulator	unknown	unknown	gnl|CDD|223905
NZ_CP032912.1|WP_001047002.1|653386_653908_+|inorganic-diphosphatase	unknown	unknown	gnl|CDD|179262
NZ_CP032912.1|WP_139523373.1|627163_627733_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP032912.1|WP_139522732.1|645178_645880_-|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|224054
NZ_CP032912.1|WP_139522738.1|652005_652569_+|glycosyltransferase-family-25-protein	unknown	unknown	gnl|CDD|225843
NZ_CP032912.1|WP_139522730.1|634076_634646_+|outer-membrane-beta-barrel-protein	unknown	unknown	gnl|CDD|280099
NZ_CP032912.1|WP_139522728.1|628832_630266_+|efflux-RND-transporter-outer-membrane-subunit-HefA	unknown	unknown	gnl|CDD|224455
NZ_CP032912.1|WP_139522734.1|646631_648602_-|DNA-ligase-(NAD(+))-LigA	unknown	unknown	gnl|CDD|236137
NZ_CP032912.1|WP_139522727.1|627801_628824_+|uroporphyrinogen-decarboxylase	unknown	unknown	gnl|CDD|234644
NZ_CP032912.1|WP_139522724.1|622190_623492_-|hemolysin	unknown	unknown	gnl|CDD|206779
NZ_CP032912.1|WP_120968132.1|624238_624433_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP032912.1|WP_139522736.1|649654_651388_+|aspartate--tRNA-ligase	unknown	unknown	gnl|CDD|234775
NZ_CP032912.1|WP_139522725.1|624812_626345_+|flagellin-A	unknown	unknown	gnl|CDD|237146
NZ_CP032912.1|WP_139523375.1|652504_653335_+|lipopolysaccharide-biosynthesis-protein	unknown	unknown	gnl|CDD|225843
NZ_CP032912.1|WP_139522733.1|646174_646510_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP032912.1|WP_139522726.1|626462_627119_+|3-methyladenine-DNA-glycosylase	unknown	unknown	gnl|CDD|184390
NZ_CP032912.1|WP_139522737.1|651404_651980_+|adenylate-kinase	unknown	unknown	gnl|CDD|234711
NZ_CP032912.1|WP_139523374.1|644422_644923_-|ABC-transporter-substrate-binding-protein	unknown	unknown	unknown
NZ_CP032912.1|WP_000984704.1|630276_630981_+|efflux-RND-transporter-periplasmic-adaptor-subunit-HefB	unknown	unknown	gnl|CDD|273776
NZ_CP032912.1|WP_139522729.1|630993_634080_+|efflux-RND-transporter-permease-subunit-HefC	unknown	unknown	gnl|CDD|334294

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP032912.1|WP_001047002.1|653386_653908_+|inorganic-diphosphatase	gnl|CDD|179262	PRK01250, PRK01250, inorganic diphosphatase.	1.29704e-94
NZ_CP032912.1|WP_139522732.1|645178_645880_-|ATP-binding-cassette-domain-containing-protein	gnl|CDD|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.57529e-42
NZ_CP032912.1|WP_139522738.1|652005_652569_+|glycosyltransferase-family-25-protein	gnl|CDD|225843	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane].	1.22225e-41
NZ_CP032912.1|WP_139522730.1|634076_634646_+|outer-membrane-beta-barrel-protein	gnl|CDD|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	3.82125e-06
NZ_CP032912.1|WP_139522734.1|646631_648602_-|DNA-ligase-(NAD(+))-LigA	gnl|CDD|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_CP032912.1|WP_139522735.1|648678_649620_+|response-regulator	gnl|CDD|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	4.28778e-31
NZ_CP032912.1|WP_139522724.1|622190_623492_-|hemolysin	gnl|CDD|206779	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain. Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.	3.45686e-44
NZ_CP032912.1|WP_139522736.1|649654_651388_+|aspartate--tRNA-ligase	gnl|CDD|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NZ_CP032912.1|WP_139522725.1|624812_626345_+|flagellin-A	gnl|CDD|237146	PRK12584, PRK12584, flagellin A; Reviewed.	0
NZ_CP032912.1|WP_139523375.1|652504_653335_+|lipopolysaccharide-biosynthesis-protein	gnl|CDD|225843	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane].	1.18841e-28
NZ_CP032912.1|WP_139522726.1|626462_627119_+|3-methyladenine-DNA-glycosylase	gnl|CDD|184390	PRK13913, PRK13913, 3-methyladenine DNA glycosylase; Provisional.	4.02849e-131
NZ_CP032912.1|WP_139522737.1|651404_651980_+|adenylate-kinase	gnl|CDD|234711	PRK00279, adk, adenylate kinase; Reviewed.	2.14823e-63
NZ_CP032912.1|WP_139522729.1|630993_634080_+|efflux-RND-transporter-permease-subunit-HefC	gnl|CDD|334294	pfam00873, ACR_tran, AcrB/AcrD/AcrF family. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.	0
NZ_CP032912.1|WP_000984704.1|630276_630981_+|efflux-RND-transporter-periplasmic-adaptor-subunit-HefB	gnl|CDD|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	3.15836e-23
NZ_CP032912.1|WP_139522727.1|627801_628824_+|uroporphyrinogen-decarboxylase	gnl|CDD|234644	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.	0
NZ_CP032912.1|WP_139522728.1|628832_630266_+|efflux-RND-transporter-outer-membrane-subunit-HefA	gnl|CDD|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	4.90164e-31

Protein sequences

>NZ_CP032912.1|WP_139522730.1|634076_634646_+|outer-membrane-beta-barrel-protein
MKKIIFILALWVGLSGAFEPKKSHIYFGAMVGLAPIKITPKPVSDSSYTAFLWGAKGGYQFAFFKALALRGEFSYLMAIKPTALHTINTSLLSLNIDVLSDFYTYKKYSFGVYGGLGIGYFYQSDHLGMKNSSFMGYNGLINVGLGSTIAHYHRIELGAKIPFSKTRNSFKNLYFLESVFIHAAYSYMF
>NZ_CP032912.1|WP_139522729.1|630993_634080_+|efflux-RND-transporter-permease-subunit-HefC
MYKTAINRPITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVVVTTTYPGASAEIIESKVTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVMNKISSVRFDDSNIKKPSINKFDTDSQAIISLFVSSSSVPATTLNDYAKNTIKPMLQKINGVGGVQLNGFRERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNSQRELSILINANSYSVADVEKIQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKHIQAISPSYEIRPFLDTTGYIRTSIEDVKFDLILGAILAVLVVFAFLRNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIHKKLEMGMSKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALSYVVVVTIIPMVSSVVVNPKHSRFYVWSEPFFKALESRYTRLLQWVLNHKLIISIAVVLVFVGSLFVASKLGMDFMLKEDRGRFLVWLKAKPGVSIDYMTQKSKIFQKAIEKHAEVEFTTLQVGYGTTQNPFKAKIFVQLKPLKERKKEHELGQFELMRVLRKELRSLPEAKGLDTINLSEVTLIGGGGDSSPFQTFVFSHSQEAVDKSVENLRKFLLESPELKGKVESYHTSTSESQPQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKEDGKEYDMIIRVPDDKRVSIEDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAEPNRNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKETNGEFLIALATAFVLIYMILAALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVANEERKKGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSGGLMISMVLSLLIVPVFYRLLAPIDDKIKRFYQNQKALE
>NZ_CP032912.1|WP_000984704.1|630276_630981_+|efflux-RND-transporter-periplasmic-adaptor-subunit-HefB
MMRKILIGLFLSFLSMEAGEKVYAIFNVKAMQDSKLTLDSTGIVDSIKVTEGSVVKKGDVLLLLYNQDKQAQSDSTEQQLIFAKKQYQRYSKIGGAVDKNTLEGYEFTYRRLESDYAYSIAVLNKTILRAPFDGVIASKNIQVGEGVSANNTVLLRLVSHARKLVIEFDSKYINAVKVGDTYTYSIDGDSNQHEIKITKIYPTVDENTRKVSAEALLSKPMAVGLFGDGFIQTK
>NZ_CP032912.1|WP_139522728.1|628832_630266_+|efflux-RND-transporter-outer-membrane-subunit-HefA
MNTIIRYASLWGLCAVLTLAQAPSKTPDEIKQILNNYSHKNLKLIDPPTSSLEATPSFLSSPKETATTINQEIAKYHEKSDKAALGLYELLKGATTNLSLQAQELSVKQAMKNHTIAKAMFLPTLNASYNFKNEARDTPEYKHYNTQQLQTQVTLNVFNGFSNVNNVKEKSATYRSSVANLEYSRQSVYLQVVQQYYEYFNNLARMIALQKKLEQIQTDIKRVTKLYDKGLTTIDDLQSLKAQGNLSEYDILDMQFALEQNRLTLEYLTNLSVKNLKKTTIDAPNLQLRERQDLVSLREQISALRYQNKQLNYYPKIDVFDSWLFWIQKPAYATGRFGNLYPGQQNTAGVTATLNIFDDIGLSLQKQSIMLGQLANEKNLAYKKLEQEKDEQLYRKSLDIARAKIESSKASLDAANLSFANIKRKYDANLVDFTTYLRGLTTRFDAEVAYNLALNNYEVQKANYIFNSGHKIDDYVH
>NZ_CP032912.1|WP_139522727.1|627801_628824_+|uroporphyrinogen-decarboxylase
MMIFIDACFRKETPYTPIWMMRQAGRYLSEYQESRKKAGSFLELCKNSDLATEVTLQPVEILGVDAAILFSDILVVPLEMGLNLEFIPKKGPHFLETITDLKSVESLKVGAYKQLNYVYDTISQTRQKLSKEKALIGFCGSPWTLATYMIEGEGSKSYAKSKKMLYSEPEVLKALLEKLSLELIEYLSFQIQAGVNAVMIFDSWASALEKEAYLKFSWDYLKKISKELKKRYAHIPVILFPKGIGAYLDSIDGEFDVFGVDWGTPLTAAKKILGGKYVLQGNLEPTRLYDKNALEEGVETILKVMGNQGHIFNLGHGMLPDLPRENAKYLVQLVHAKTKR
>NZ_CP032912.1|WP_139523373.1|627163_627733_+|hypothetical-protein
MAKKDGDFFKPLEPTKKYFGSFKIGYLYQHAETTKRSPIRPKNRPPILMDKIYHDTSLGFQAGFVLKKKALLGGYLDAGMGDSYFMSAGFIAGVRLFKGWVIPKIALGYQLQILGAKIDKYQFNIQSAVGSVGLFFNAAKNFGLSIEARGGIPFYFIQSKFSKAFGTPRLNIYSVGITFTFYDFTRFLG
>NZ_CP032912.1|WP_139522726.1|626462_627119_+|3-methyladenine-DNA-glycosylase
MLNSFEILKALKSLDLLKNAPSWWWPNALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILKNDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSKNVLKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKLGIEIEDYDELQHFFEKGVQENLNSALALYKNTISLAQLYARFHGKIVEFSKQKLELKL
>NZ_CP032912.1|WP_139522725.1|624812_626345_+|flagellin-A
MAFQVNTNINAMNAHVQSALTQNALKTSLERLSSGLRINKAADDASGMTVADSLRSQASSLGQAIANTNDGMGIIQVADKAMDEQLKILDTVKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKASIGSTTSDKIGQVRIATGALITASGDISLTFKQVDGVNDVTLESVKVSSSAGTGIGVLAEVINKNSNRTGVKAYASVITTSDVAVQSGSLSNLTLNGIHLGNIADIKKNDSDGRLVAAINAVTSETGVEAYTDQKGRLNLRSIDGRGIEIKTDSVSNGPSALTMVNGGQDLTKGSTNYGRLSLTRLDAKSINVVSASDSQHLGFTAIGFGESQVAETTVNLRDVTGNFNANVKSASGVNYNAVIASGNQSLGSGVTTLRGAMVVIDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRDVDFAEESANFNKNNILAQSGSYAMSQANTVQQNILRLLT
>NZ_CP032912.1|WP_120968132.1|624238_624433_-|hypothetical-protein
MMTKETYEAYLDTDIANNSKQLEEIRNQKLNKALELCKRSGLVLRKFDGKNFSFECDEPNRSKL
>NZ_CP032912.1|WP_139522724.1|622190_623492_-|hemolysin
MFGNKQLQLQISQKDSEITELKKEVNLYQSLLNLCLHEGFVGIKNNKVVFKSGNLASLNNLEEQSVHFKENAESVNLQGVSYSLKSQNIDGVQYFSLAKKTGGVGEYHKNDLFKTFCTSLKEGLENAQESMQYFHQETGLLLNAAKNGEAHSTEGLGTVNKTGQDIESLYEKMQNATSLADSLNQRSNEITQVISLIDDIAEQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAEKTQKATKEIAVVVKSMQQEANDIQTNTHDINSIVSSIKGDVEELKSTVKNNMIVAQAAKYTTYNINNRVFCGLAKLDHVVFKNNLYGMVFGLNSFDITSHKNCRLGKWYYEGAGKENFSNTSGYRALESHHASVHAEANDLVKAVQEDHITDSKYLEHKVHLMEDSAKHVKENIDKMFYEKQDELNKIIEKIQKGE
>NZ_CP032912.1|WP_139523374.1|644422_644923_-|ABC-transporter-substrate-binding-protein
MLSPATFKQITLALIASRLIVVILYAFIFIVLSFYALNIITILNFKALILGFVSVFSSALFCFCLAIFVARIFQNEQSILGFCNIINLYALMSCNVFVPLEYLHNIGQLFIKTSVFYYLNQLLIKAFQGIDTILVLATSTFFIIGGIILFLLSANRMLLTPKERMR
>NZ_CP032912.1|WP_139522732.1|645178_645880_-|ATP-binding-cassette-domain-containing-protein
MISNISIHPKTMFKNALNIQDFSFKSHTSTAIIGTNGAGKSTLINTILGIRSDYHFKAQNNNIPYHDNVIPQRKQLGVVSNLFNYPPGLNANDLFKFYQFFHKNCTPNLFEKNLLNKTYEHLSDGQKQRLKIDLALSHHPQLIIMDEPESSLEQNALIRLSNLISLRNTQQLTSIIATHDPIVLDSCEWVLFLKNGNIAQYKPLNSILKSVAKTFNFKEKPTTKDLLALLKDI
>NZ_CP032912.1|WP_139522733.1|646174_646510_-|hypothetical-protein
MMEHRKAHTTIQALQAKRKKLLTELAELEAEIKVSNERKSSFNISLSPSLLAEIEEIEYEEKTSKERRINHSVLLSPSFMAKVDEYMKEKGFPNRSLLFEKALEFYMLKHP
>NZ_CP032912.1|WP_139522734.1|646631_648602_-|DNA-ligase-(NAD(+))-LigA
MIKSQKEYLERIAYLNTLSHHYYNLDEPIVSDAVYDELYQELKAYEEKNPSHIQANSPTQKVGATTTNSFNKNPHLMRMWSLDDVFNQSELQAWLQRILKAYPNASFVCSPKLDGVSLNLLYQHGKLVSATTRGNGLEGELVTHNAKHIANIPHSIAYNEEIEIRGEVIISKKDFDALNQERLDANEPLFANPRNAASGSLRQLDSEITKKRKLQFIPWGVGKHSLNFLSFKECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVNELGIQKELGYTQKSPKFACAYKFPALEKHTKIIGVINQVGRSGAITPVALLEPVEIAGAMINRATLHNYSEIEKKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQHKIERPKVCPICSHELLCEEIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFEEKLILNALDLYALKLEDLMRLDKFKIKKAQNLLDAILKSKNPPLWRLINALGIEHIGKGASKTLARYGLNVLEKSEAEFLEMEGFGVEMARSLVNFYASNQEFIRSLFDLLNPKNSDMAEEKQESSSVFNNKTIVLTGTLSKPRQEYAQMLENLGAKISSSVSAKTDFLIVGENAGSKLALAQKHGVSVLNEEELLKRLKELD
>NZ_CP032912.1|WP_139522735.1|648678_649620_+|response-regulator
MVRGIDKTTSLHLNNEVQFLCFRLDKEKDAQLYGLNIFKIREIIHYDGEVTEILGGSDGMMLGFLSVRGESIPLVDVKRWLHYNANDPSRDLKECSVKDDHNLVIVCHFSNHSIALKVLKIERIIHKNWTEIGAGDKQGINEESKLSAITRFDEERVVQILDVEKMVIDVFPSLKDLDDLTLRCIEAIQSQKLILIAEDSLSALKTLEKIVQTLELRYLAFPNGRELLDYLYEKEHYQQVGVVITDLEMPVISGFEVLKTIKADSRTEHLPVIINSSMSSDSNRQLAQSLEADGFVVKSNILEIHEMLKKTLS
>NZ_CP032912.1|WP_139522736.1|649654_651388_+|aspartate--tRNA-ligase
MRSHFCTEISEKDVGKTIKVAGWCNTYRDHGGVVFIDLRDKSGLVQLVCDPSSKAYEKALEVRSEFVLVAKGKARLRGPGLENPKLKTGKIEIVLEELVIENKSATPPIEIGNKNVNEDLRLKYRYLDLRSLNAYEIFKLRSEVALIARNALAQKGFLEIETPILSKTTPEGARDYLVPSRVHEGEFFALPQSPQLFKQLLMVGGMDRYFQIARCFRDEDLRADRQPEFTQIDAEMSFCDENDVMGVVEDLLQEIFKAIGHTISKPFKRMPYKEAMENYGSDKPDLRFELPLIEVGDCFRDSSNAIFSNTAKDPKNQRIKALNVKGADALFSRSVLKELEEFVRQFGAQGLAYLQIKEDGIKGPLVKFLSEKGLKNILEKTGAKTGDIVFFGAGDKKIVLDYMGRLRLKVAETLDLIDKDALNFLWVVNFPMFEKTENGYHAAHHPFTMPKNIECEDIEEIEAHAYDVVLNGVELGGGSIRIHKEEMQKKVFEKINIHEEEAQKKFGFLLEALKFGAPPHGGFAIGFDRLIMLMTKSSSIRDVIAFPKTQKASCLLTNAPSPINEEQLRELHIRLRK
>NZ_CP032912.1|WP_139522737.1|651404_651980_+|adenylate-kinase
MKQLFLIIGAPGSGKTTDAELIAKNNSEKIAHFSTGDLLRAESAKKTERGLLIEKFTSQGELVPLEIVVETILAAIKSSSKGIILIDGYPRSVEQMQALDKELNAQNEVVLKSVIEVKVSENTAKERVLGRSRGADDNEVVFHNRMRVFLDPLVAIQNFYKAKHLHKVINGERSIEEIVNEMQKYILSFAN
>NZ_CP032912.1|WP_139522738.1|652005_652569_+|glycosyltransferase-family-25-protein
MICVYIISLKESQRRLDTEKLVLESNEKFKGRCVFQIFDAISPKHEDFEKFIQELYDSSSLLKSDWFHSDYCYQELLPQEFGCYLSHYFLWKECVKTNQPVVILEDDATLESHFMQALEDCLKSPFDFVRLYGHYWGGHKTNLCALPIYTENEETEAFVEKTPIENHEVTPPPPPQSHTRCTTRLYY
>NZ_CP032912.1|WP_139523375.1|652504_653335_+|lipopolysaccharide-biosynthesis-protein
MKLPPPPPPNPTQDAQQDCIIETQQDPKELSEPCKIAPQKTSFNQVVFKKIKRKLNHFIGNILARTEVYKNLVSKYDELTGKYDELTGKYDELTGKYDDLTKKYDDLTEKYDDLTEKYDDLTEKYESLLAKETNIKETFWESRADSEKEALFLEHFYLTSVYVATTAGYYLTPKGAKTFIEATECFKIIEPVDMFINNPTYHDVANLTYLPCPISLNKHAFNSTIQNAKKPDISLKPPRKSYFDNLFYHKFNAQKCLKAFHKYSKQYASLKTPKEV
>NZ_CP032912.1|WP_001047002.1|653386_653908_+|inorganic-diphosphatase
MNLDQLEVSHDADSLCVVIEISKHSNIKYELDKESGALMVDRVLYGAQNYPANYGFVPNTLGSDGDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLLALPIDKIDPTHSYVKDIDDLSKHTLDKIKHFFETYKDLEPNKWVKVKGFENKESAIKVLEKAIKAYQG

Crispr_ID: NZ_CP032912_3

• CRISPR_ID: NZ_CP032912_3
• CRISPR_location: 961156-961344
• CRISPR_type: Orphan
• Repeat_type: I-B
• Spacer_info: 3 spacers

Consensus repeat of NZ_CP032912_3

Consensus_repeat	Method
TTCAATCAAGGGACTTAT	CRT

spacers of NZ_CP032912_3

>3.1|961174|42|NZ_CP032912|CRT
CACTTTAGTAATAGTGCCACTTTAAGCTTTAATCATAGCGCT
>3.2|961234|39|NZ_CP032912|CRT
CACTTTAATAGCGCCCAATCCACTTTTGAAAACAGCAAT
>3.3|961291|36|NZ_CP032912|CRT
GATTTTAATGACAATACCAGCTTTAATAACGACACC

CRISPR arrays and Neighbor proteins around NZ_CP032912_3

CRISPR arrays

The CRISPR arrays of NZ_CP032912_3

>merge|NZ_CP032912|3|961156-961344|CRT
TTCAATCAAGGCACTTATCACTTTAGTAATAGTGCCACTTTAAGCTTTAATCATAGCGCTTTCAATCAAGGGTCTTATCACTTTAATAGCGCCCAATCCACTTTTGAAAACAGCAATTTCAATCAAGGGACTTATGATTTTAATGACAATACCAGCTTTAATAACGACACCTTCAATCAAGGGACTTAT

>NZ_CP032912|3|1|961156-961344|CRT
TTCAATCAAGGCACTTAT	CACTTTAGTAATAGTGCCACTTTAAGCTTTAATCATAGCGCT
TTCAATCAAGGGTCTTAT	CACTTTAATAGCGCCCAATCCACTTTTGAAAACAGCAAT
TTCAATCAAGGGACTTAT	GATTTTAATGACAATACCAGCTTTAATAACGACACC
TTCAATCAAGGGACTTAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP032912.1|WP_139522940.1|973647_974451_+|5'/3'-nucleotidase-SurE	unknown	unknown	gnl|CDD|223570
NZ_CP032912.1|WP_139522934.1|959297_960296_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl|CDD|273675
NZ_CP032912.1|WP_139522931.1|954668_955100_-|Sua5/YciO/YrdC/YwlC-family-protein	unknown	unknown	gnl|CDD|376519
NZ_CP032912.1|WP_000591722.1|974447_975107_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP032912.1|WP_139522937.1|970116_971262_+|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl|CDD|272903
NZ_CP032912.1|WP_139522927.1|947856_949455_+|Hop-family-adhesin-AlpB	unknown	unknown	gnl|CDD|280099
NZ_CP032912.1|WP_139522938.1|971200_972181_+|zinc-metalloprotease-HtpX	unknown	unknown	gnl|CDD|235081
NZ_CP032912.1|WP_139522925.1|943413_945441_+|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl|CDD|223288
NZ_CP032912.1|WP_139522932.1|955104_958362_-|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl|CDD|235393
NZ_CP032912.1|WP_024750690.1|969538_970120_+|recombination-protein-RecR	unknown	unknown	gnl|CDD|273176
NZ_CP032912.1|WP_139522930.1|952037_954485_-|TonB-dependent-receptor	unknown	unknown	gnl|CDD|224544
NZ_CP032912.1|WP_139522941.1|975110_975713_+|6-pyruvoyl-tetrahydropterin-synthase-family-protein	unknown	unknown	gnl|CDD|223792
NZ_CP032912.1|WP_000426949.1|972181_972724_+|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl|CDD|129173
NZ_CP032912.1|WP_139522926.1|946284_947835_+|Hop-family-adhesin-AlpA	unknown	unknown	gnl|CDD|280099
NZ_CP032912.1|WP_139522936.1|967995_969105_+|Hop-family-outer-membrane-protein-HopJ/HopK	unknown	unknown	gnl|CDD|280099
NZ_CP032912.1|WP_139522924.1|941668_942280_+|restriction-endonuclease	unknown	unknown	unknown
NZ_CP032912.1|WP_139522933.1|958460_959153_-|Bax-inhibitor-1/YccA-family-protein	unknown	unknown	gnl|CDD|198414
NZ_CP032912.1|WP_139522939.1|972739_973651_+|polyprenyl-synthetase-family-protein	unknown	unknown	gnl|CDD|223220
NZ_CP032912.1|WP_001115891.1|969171_969378_-|4-oxalocrotonate-tautomerase-family-protein	unknown	unknown	gnl|CDD|129125
NZ_CP032912.1|WP_139522929.1|950245_951790_-|outer-membrane-beta-barrel-protein-HofG	unknown	unknown	gnl|CDD|334957

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP032912.1|WP_139522940.1|973647_974451_+|5'/3'-nucleotidase-SurE	gnl|CDD|223570	COG0496, SurE, Predicted acid phosphatase [General function prediction only].	4.64587e-126
NZ_CP032912.1|WP_139522934.1|959297_960296_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl|CDD|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	4.60483e-158
NZ_CP032912.1|WP_139522931.1|954668_955100_-|Sua5/YciO/YrdC/YwlC-family-protein	gnl|CDD|376519	pfam01300, Sua5_yciO_yrdC, Telomere recombination. This domain has been shown to bind preferentially to dsRNA. The domain is found in SUA5 as well as HypF and YrdC. It has also been shown to be required for telomere recombniation in yeast.	1.47576e-05
NZ_CP032912.1|WP_139522937.1|970116_971262_+|tRNA-pseudouridine(13)-synthase-TruD	gnl|CDD|272903	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family. an EGAD loading error caused one member to be called surE, but that's an adjacent gene. MJ11364 is a strong partial match from 50 to 230 aa. [Protein synthesis, tRNA and rRNA base modification].	3.5974e-142
NZ_CP032912.1|WP_139522927.1|947856_949455_+|Hop-family-adhesin-AlpB	gnl|CDD|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	2.95648e-53
NZ_CP032912.1|WP_139522938.1|971200_972181_+|zinc-metalloprotease-HtpX	gnl|CDD|235081	PRK02870, PRK02870, heat shock protein HtpX; Provisional.	0
NZ_CP032912.1|WP_139522925.1|943413_945441_+|UvrD-helicase-domain-containing-protein	gnl|CDD|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	5.50529e-135
NZ_CP032912.1|WP_139522932.1|955104_958362_-|carbamoyl-phosphate-synthase-large-subunit	gnl|CDD|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP032912.1|WP_024750690.1|969538_970120_+|recombination-protein-RecR	gnl|CDD|273176	TIGR00615, Recombination_protein_RecR, recombination protein RecR. All proteins in this family for which functions are known are involved in the initiation of recombination and recombinational repair. RecF is also required. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	6.34212e-97
NZ_CP032912.1|WP_139522930.1|952037_954485_-|TonB-dependent-receptor	gnl|CDD|224544	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism].	3.63416e-35
NZ_CP032912.1|WP_139522941.1|975110_975713_+|6-pyruvoyl-tetrahydropterin-synthase-family-protein	gnl|CDD|223792	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism].	3.64443e-20
NZ_CP032912.1|WP_000426949.1|972181_972724_+|GTP-cyclohydrolase-I-FolE	gnl|CDD|129173	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I. alternate names: Punch (Drosophila),GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	1.19934e-105
NZ_CP032912.1|WP_139522926.1|946284_947835_+|Hop-family-adhesin-AlpA	gnl|CDD|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	2.65902e-54
NZ_CP032912.1|WP_139522936.1|967995_969105_+|Hop-family-outer-membrane-protein-HopJ/HopK	gnl|CDD|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	9.22135e-48
NZ_CP032912.1|WP_001115891.1|969171_969378_-|4-oxalocrotonate-tautomerase-family-protein	gnl|CDD|129125	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function. [Energy metabolism, Other].	1.55073e-25
NZ_CP032912.1|WP_139522933.1|958460_959153_-|Bax-inhibitor-1/YccA-family-protein	gnl|CDD|198414	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins. This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	4.27346e-53
NZ_CP032912.1|WP_139522939.1|972739_973651_+|polyprenyl-synthetase-family-protein	gnl|CDD|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	1.95238e-76
NZ_CP032912.1|WP_139522929.1|950245_951790_-|outer-membrane-beta-barrel-protein-HofG	gnl|CDD|334957	pfam02521, HP_OMP_2, Putative outer membrane protein. This family consists of putative outer membrane proteins from Helicobacter pylori (campylobacter pylori).	2.38466e-179

Protein sequences

>NZ_CP032912.1|WP_139522934.1|959297_960296_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MKIFINGFGRIGRCVLRAILERSDTNPKLEVIGINDPANWEILAYLLEHDSVHGLLFKEVRYSNYKLIIGSLEIPVFNSIKDLKGVDVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFIGEYDEKQYPTLVYGVNHFLYQNQAIVSNASCTTNAIAPVCAILDKAFKIKEGMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRVPSLDVSMIDLSLFLEKKALKESINDLLITASKGALKGVLEIDLKERVSSDFISNPNSVIIAPDLTFTLENMVKIMGWYDNEWGYSNRLVDMAQFVYHY
>NZ_CP032912.1|WP_139522933.1|958460_959153_-|Bax-inhibitor-1/YccA-family-protein
MALYDRADSRNAYAEDSLLRESELVSFVKTTYKFFAGSLLLATIGALLGLMNFQAVVQYKWVFFIAEIAALFGLMFSKSKPGLNLFMLFAFTSLSGVTLVPLLGMVIAKAGLGAVWQALGMTTIVFGLMSVYALKTKNDLANMGKMLFIALIVVVVCSLINLFLGSPMFQVVIAGASAILFSLYIAYDTQNIVKGMYDSPIDAAVDLYLDFLNVFISILQIIGIFSDRDK
>NZ_CP032912.1|WP_139522932.1|955104_958362_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDISNILLIGSGPIVIGQACEFDYSGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITGENIAAIIKKEKIDAILPTMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAYNELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESLLGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFAILREIGVDTGGSNVQFAIHPETLRMVVIEMNPRVSRSSALASKATGFPIAKVATMLAVGFSLDEIQNDITNTPASFEPSLDYIVVKIPRFAFEKFAGVSSTLGTSMKSIGEVMAIGGNFLEALQKALCSLENNWLGFESLSKDLEMIKKEIRRPNPKRLLYIADAFRLGVCVDEVFELCQIDRWFLSQIQKLVKAEESINSSVLTDAKKLRELKNLGFSDARIAAKIKENENLEVSPFEVELARSNLQIAPNFEEVDTCAAEFLSLTPYLYSTYAPNPLPPIENKQEKQEKKILIIGSGPNRIGQGIEFDYCCVHASFALKDLNIKSVMLNCNPETVSTDYDTSDTLYFEPIHFECVKSIIQRERVDGIIVHFGGQTPLKLAKDLAKMQAPIIGTPFKVIDIAEDREKFSLFLKELDIKQPENGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQILENIEELRHYLESVTHALEISPKNPLLIDKFLEKAVELDVDVICDKKEVYIAGILQHIEEAGIHSGDSACFIPSTLRAEILDEIEQVSAKIALHLGVVGLLNIQFAVHDNTLYLIEVNPRASRTVPFLSKALGVPLAKVATRVMVLEDLKEALKFYDKKNIVEYSKGVYKPKMPHFVALKEAVFPFNKLYGSDLILGPEMKSTGEVMGIARSLGLAFFKAQTACFNPIKNKGLIFASIKDKDKEEACVLMKRLVQLGFELCATEGTHKALEKAEVKSLKVLKISEGRPNIMDLMMNGEISMAINTSDHKSQDDAKLIRASVLKNHVSYFTTLSAIEVLILALEESSKEDELLALQDYLK
>NZ_CP032912.1|WP_139522931.1|954668_955100_-|Sua5/YciO/YrdC/YwlC-family-protein
MALVYLAQSDTTIGLLSKDSEKLNALKKRPKNQSVLIESADFSTLKSLVRAPNAFKNLIRRSAKTTFIYPNSKAVRVVRGRHGDFLKRFKTLYSTSANLTQCTYDKEIASNLADVIVSDERGLFESASSKIFRIYKDKKVRIR
>NZ_CP032912.1|WP_139522930.1|952037_954485_-|TonB-dependent-receptor
MNDKRFRKYWSFSIFLSLLGMFELEAKEEEKEERKTERKKDKKKNAQHTLGKVTTQAAKIFNYNNQTTISSKELERRQANQISDMFRRNPNINVGGGAVIAQKIYVRGIEDRLARVTVDGAAQMGASYGHQGNTIIDPGMLKSVVVTKGAAQASAGPMALIGAIKMETKSASDFIPKGKDYAISGAATFLTNFGDRETVMGAYRNHHFDALLYYTHQNIFYYRDGDNAMKNLFDPKANNKVTGSPSEQNNVMAKINGYLSDRDTLTISYNMTRDNANRPLRANFTGTFLPYSCGDFNAFPNEKNPSDCLFENDASLFKTYSVNLVHNVSLNYEREGGSRFGDPKLKINGYTSIRNVQIDPLFKPSDIAASIPFTPNPQLSQNEENECVAQGGIYDATKQTCSITFKSLGGGSVVANKNLFIINSGFNANVIHTIDHKNDNLLEYGLNYQNLTTFDKAIPNSELVKPGDAPDACLRVTGPNDPNMNGRCQRNGATANVVGVYAQANYTLHPMITLGAGTRYDVYTLVDKDWQLHITQGFSPSAALNISPLENLNFRLSYAYVTRGPMPGGLVWMRQDNLRYNRNLKPEIGQNVEFNTEYSSQYFDFRAAGFVQLISNYINQFSSTLFVTNLPAQDIIYVPGYEVSGTAKYKGFSLGLSVARSWPSLKGRLIADVYELAATTGNVFILTASYTIPRTGLSITWLSRFVTDLDYCSYSPYRNGPTDIDRRPSHCPKTPGIFHVHKPGYGVSSFFITYKPTYKKLEGLSLNAVFNNVFNQQYIDQASPVMSPDEPNQDKYARGMAEPGFNARFEISYKF
>NZ_CP032912.1|WP_139522929.1|950245_951790_-|outer-membrane-beta-barrel-protein-HofG
MKQEKYFLTSSLSLLSFLLCPAEAFDYRFSGRVENFSKIGFNNSQINTKKGIYPTESFIDIVTLAQVKVNLLPKGTENHRLSVSLGGAIAAIPYDKTKYDINQANGKIFGSIVENFIGGYHGYFFNKYLGPAYAGTSQSASYHARPYVVDTAFLRYDYKDVFGFKAGRYEANIDFMSGSNQGWEVYYQPYKTETQRLRFWWWSSFGRGLAFNSWIYEFFATVPYLKKGGNPNNSNDFINYGWHGITTTYSYKGLDAQFFYYFAPKTYNAPGFKLVYDTNRNFENVGFRSQSMIMTTFPLYYRGWYNPETNTYSLEDSTPHGSLLGRNGVTLNIRQVFWWDNFNWSIGFYNTFGNSDAFLGSHTMPRGNNTSYIGSEISITTKHAGMIGYDFWDNTAYDGLADAITNANTFTFYTSVGGIHKRFAWHVFGRVSHANKNALGQVGRANEYSVQFNASYAFTESVLLNFRITYYGARINKGYQAGYFGAPKFNNPDGDFSANYQDRSYMMTNLTLKF
>NZ_CP032912.1|WP_139522927.1|947856_949455_+|Hop-family-adhesin-AlpB
MKQNLKPFKMIKENLMTQSQKVRFLAPLSLALSLSFNPVGAEEDGGFMTFGYELGQVVQQVKNPGKIKAEELAGLLNSNTTNNTNINIAGTGGNVAGTLGNLFMNQLGNLIDLYPTLNTNNIHQCGANNNGSGGSGATAVAATSSSNSPCFQGNLALYNEMVGSIKTLSQNISKNIFQGNNNTTSTNLSNQLSELNTASVYLTYMNSFLNANNQAGGIFQNNTNQAYGNGVTAQQIAYILKQASITMGPSGDSGAAAAFLDAALAQHVFNSANAGNDLSAKEFTSLVQNIVSNSQNALTLANNANISNSTGYQVSYGGNIDQARSTQLLNNTTNTLAKVTALNNELKANPWLGNFAAGNSSQVNAFNGFITKIGYKQFFGENKNVGLRYYGFFSYNGAGVGNGPTYNQVNLLTYGVGTDVLYNVFSRSFGSRSLNAGFFGGIQLAGDTYISTLRNSPQLASRPTATKFQFLFDVGLRMNFGILKKDLKSHNQHSIEIGVQIPTIYNTYYKAGGAEVKYFRPYSVYWVYGYAF
>NZ_CP032912.1|WP_139522926.1|946284_947835_+|Hop-family-adhesin-AlpA
MIKKNRTLFLSLALCASISYAEDDGGFFTVGYQLGQVMQDVQNPGGAKSDELARELNADVTNNILNNNTGGNVAGALSNAFSQYLYSLLGAYPTKLNSNDVSANALLSGAVGSGTCAAAGTAGGNSLNTQSACTAAGYYWLPSLTDRILSTIGSQTNYGTNTNFPNMQQQLTYLNAGNVFFNAMNKALENKNGTSNSANGATGSDGQTYSQQAIQYLQGQQNILNNAANLLKQDELLLEAFNSAVAANIGNKEFNSAAFTGLVQGIIDQSQAVYNELTKNTISGSAVDNAGINSNQANAVQGRASQLPNALYNAQVTLDKINALNNQVRSMPYLPQFRAGNSRSTNILNGFYTKIGYKQFFGKKRNIGLRYYGFFSYNGASVGFRSTQNNVGLYTYGVGTDVLYNIFSRSYQNRSVDMGFFSGIQLAGETFQSTLRDDPNVKLHGKINNTHFQFLFDFGMRMNFGKLDGKSNRHNQHTVEFGVVVPTIYNTYYKSAGTTVKYFRPYSVYWSYGYSF
>NZ_CP032912.1|WP_139522925.1|943413_945441_+|UvrD-helicase-domain-containing-protein
MLETLQLNPEQLKAAKALKGYNLIIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNEMIARVAKYSKLSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELKKLLESIVDTKNAIDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSSKNPEHMPYAALYENILDEFENTKKKHNYIDYNDLLLLFKKAMLERPSPYKEVLCDEFQDTNPLQESILDAINPPSLFCVGDYDQSIYAFNGADISIISNFTQKYKNAQVFTLTKNYRSSKEILDLANQVIQHNERIYPKNLEVVKSGKFNKPALLNYNDNIVQCQDIAKRIVMRKNFKEVAVIFRNNASADQLEAALRSYNVPSKRKGSASFFESKEVALALDICALLFNPKDIMAAIHVLSCISDIGSNTAKDIHEALMLLGNGDLKLALTHPSKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFHSHPVLMHPKISLNGAKTLSDFFTLYTKAPTHSPSALIKHILESAFFQTFKTRLLKERSKNKDGSYNEFKKLQAQKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSSEATQGEGVNLLSVHASKGLEFKDVYIIDLMEGRFPNHKLMNTGGGIEEERRLFYVAITRAKENLWLSYAKNELRENAKPKEHKPSVFLYEAGLLKPDSK
>NZ_CP032912.1|WP_139522924.1|941668_942280_+|restriction-endonuclease
MIPTQLNEEFLKTNPYNLSQPLQDGRLNPSVNEEEILNTIKHSFPVQLPKSREWWDFSFKENDIFYPVNIKTTTTKTADNLNCKLGIYYALCGLLPTFNNEIAWEKYFQKLHEDLGKNTDRDYYFLITNKNDPKDIFINSLKGIQTLQPNNLPFQCKWDNNREIVQRNFTESKNFILSALAKSVTLMANIYLAFKEVFGEFFE
>NZ_CP032912.1|WP_139522936.1|967995_969105_+|Hop-family-outer-membrane-protein-HopJ/HopK
MQFPKTLLHSSFFLPLFLSFCIAEENGAYASVGFEYSISHAIQHNDPFLNQERIQIISNAQNKIYKLNQVKNEITSMPKTFAYINNALKNNSKLTPTEMQAEKYYLQSSFENIEKIVMLSGGVASNPQLAQALEKIQEPITNPLEFEENLKNLESQFAQSQNRMLSSLSSQIAQISNSLNALDPNSYSKNISSMYGVSLSVGYKHFFTKKKNQGFRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGIDYLYNFIDNSQKHSSVGFYAGFALAGSSWVGSGLSMWVSQRDFINNYLTDYQAKMHTSFFQIPLNFGVRVNVNRHNGFEMGLKIPLAVNSFYETHGKGLNTSLFFKRLVVFNVSYVYSF
>NZ_CP032912.1|WP_001115891.1|969171_969378_-|4-oxalocrotonate-tautomerase-family-protein
MPFINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASVVVVIDEVDSNNYGLGGESVHHLRQKN
>NZ_CP032912.1|WP_024750690.1|969538_970120_+|recombination-protein-RecR
MNTYKNSLNHFLNLVDCLEKIPNVGKKSAFKMAYHLGLENPYLALKITHALENALENLKTCTSCNALSESEICEICSDESRQNSQLCMVLHPRDVFILEDLKDFLGRYYVLNSIEEVDFNALEKRLIEENIKEIIFAFPPTLANDSLMLYIEDKLQHFHLTFTKIAQGVPTGVNFENIDSVSLSRAFNSRIKA
>NZ_CP032912.1|WP_139522937.1|970116_971262_+|tRNA-pseudouridine(13)-synthase-TruD
MNLNFMPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVKIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTNNFQERNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTEQVLEQIARFGMPNYFGSQRFGKFNDNHQEGLKILQNQTKFAHQKLNAFLISSYQSYLFNVLLSKRLEISKIISAFSVKENLEFFKQKNLSVNPNTLKALKNQAHPFKILEGDVMCHYPYGKFFDALKLEKEGERFLKKEVAPTGLLDGKKALYAKNLSLEIEKEFQHNLLNSHAKTLGSRRFFWVFAENVTSQYVKEKAQFELGFYLPKGSYASALLKEIKHEKGENNDEF
>NZ_CP032912.1|WP_139522938.1|971200_972181_+|zinc-metalloprotease-HtpX
MRARCSKKSSMRKEKIMTNFEKIIAQNRLKTNAVLATYCAIFAFIGLLVDAIRINANDLGIALFKLITFQIFPTITIIMFLAAFVVIVVCIQNFSSIMLSGDEYKLIDKSKVLSSKENQIHRLLLELLEEANLHFEPKLYIINAPYMNAFASGWDESNSLIALTSALIERLDRDELKAVIAHELSHIRHNDIRLTMCVGILSNIMLLVANFSVYFFMGNRKNSGANLARMILLALQIILPFLTLILQMYLSRTREYMADSGAAFLMHDNKPMIRALQKISNDYTNNDYKGIDQNSTRSAAYLFNAEMFSTHPSVKNRIQSLRRRVI
>NZ_CP032912.1|WP_000426949.1|972181_972724_+|GTP-cyclohydrolase-I-FolE
MENFFNQFFENIGEDKNREGLKETPKRVQELWKFLYKGYKEDPKVALKSAYFQGVCDEMIVAQNIEFYSTCEHHLLPFLGNISLGYIPKEKIVGISAIAKLIEIYSKRLQIQERLTTQIAETFDEIIEPRGVIVVCEAKHLCMSMQGVQKQNAIIKTSVLRGLFKKDPKTRAEFMQLLKS
>NZ_CP032912.1|WP_139522939.1|972739_973651_+|polyprenyl-synthetase-family-protein
MNSPNLSFYCNECERFESFLKNHHLHLESFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELIKILSANGGIKGMVLGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLMMGLVASGIKDEELFKWLQAFGLKTGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANDYAQTLKTEVLNDLNLLKPAYPLLQENLNALLNTLFKGKT
>NZ_CP032912.1|WP_139522940.1|973647_974451_+|5'/3'-nucleotidase-SurE
MKRILLTNDDGYHAKGIKALEQALEEMAEIYVVAPKHEKSACSQCITITAPLRAEKIKGKEGRHYRIDDGTPSDCVYLAINELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTIQGVPSIAISQILSNKNKNTPLSFDLAQKIIQDLVQNIFKNGYPLKGRKLLNVNVPNCSLQEYKGECITPKGYRLYKKEVHKRTDPKNESYFWLGLHPLEWQKRENEDRLSDFDAIASNHASITPLNLDLTSYDDLKSLESWHKGMLK
>NZ_CP032912.1|WP_000591722.1|974447_975107_+|hypothetical-protein
MIKKHRLAFLGLIVGVFFFFNACQHRLHMGYYSEVTGDYLFNYNSTIVVAYDRSDAMTSYYINVIVYELQKLGFYNVFTQAEFPLDKAKNVIYARIVRNISAVPFYQYNYQLIDQVNKPCYFLGGQFYCSQTPTDYYAINGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGYQMLYRDLIKSTIKRIDFNRPERYYYNLRLPLYQPCYRQ
>NZ_CP032912.1|WP_139522941.1|975110_975713_+|6-pyruvoyl-tetrahydropterin-synthase-family-protein
MVIRRLYKFCASHVVRNCSSLRCAQNIHGHNYEVEVFIETNRLDHANMALDFGLMQQEMQVFIESFDHAHHFWDKESDEFQRFIENHCVRYVKCSFNLSAESYALMFLYYLTRILQKSVFSNNEGELKISSVRVHETKNGYAESFLKDLENPHFKSLVHNHCVSFSQGIQSLWHDKDFFNKIISDEKQCFFHAKPLHQIP

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP032912_2	2.1|636964|25|NZ_CP032912|CRISPRCasFinder	636964-636988	25	MT446423	UNVERIFIED: Escherichia virus TH58, complete genome	57400-57424	5	0.8
NZ_CP032912_2	2.1|636964|25|NZ_CP032912|CRISPRCasFinder	636964-636988	25	MH791409	UNVERIFIED: Escherichia phage EcWhh-1, complete genome	111916-111940	5	0.8
NZ_CP032912_2	2.1|636964|25|NZ_CP032912|CRISPRCasFinder	636964-636988	25	MT150133	Enterobacteria phage vB_EcoM_IME540, complete genome	95479-95503	5	0.8
NZ_CP032912_2	2.1|636964|25|NZ_CP032912|CRISPRCasFinder	636964-636988	25	MT446415	UNVERIFIED: Escherichia virus TH44, complete genome	65991-66015	5	0.8
NZ_CP032912_2	2.1|636964|25|NZ_CP032912|CRISPRCasFinder	636964-636988	25	NC_028847	Enterobacteria phage QL01, complete genome	49556-49580	5	0.8
NZ_CP032912_2	2.1|636964|25|NZ_CP032912|CRISPRCasFinder	636964-636988	25	NC_012741	Enterobacteria phage JS10, complete genome	49462-49486	5	0.8
NZ_CP032912_2	2.1|636964|25|NZ_CP032912|CRISPRCasFinder	636964-636988	25	MK310184	Phage NC-G, complete genome	162629-162653	5	0.8
NZ_CP032912_2	2.1|636964|25|NZ_CP032912|CRISPRCasFinder	636964-636988	25	EU863409	Enterobacteria phage JS10, complete sequence	49462-49486	5	0.8
NZ_CP032912_2	2.1|636964|25|NZ_CP032912|CRISPRCasFinder	636964-636988	25	MH051917	Enterobacteria phage vB_EcoM_IME341, complete genome	124386-124410	5	0.8

1. spacer 2.1|636964|25|NZ_CP032912|CRISPRCasFinder matches to MT446423 (UNVERIFIED: Escherichia virus TH58, complete genome) position: , mismatch: 5, identity: 0.8

caaccacgcagagcagacagacgct	CRISPR spacer
acaccacgcagagcagccagacgag	Protospacer
  ************** ******  

2. spacer 2.1|636964|25|NZ_CP032912|CRISPRCasFinder matches to MH791409 (UNVERIFIED: Escherichia phage EcWhh-1, complete genome) position: , mismatch: 5, identity: 0.8

caaccacgcagagcagacagacgct	CRISPR spacer
acaccacgcagagcagccagacgag	Protospacer
  ************** ******  

3. spacer 2.1|636964|25|NZ_CP032912|CRISPRCasFinder matches to MT150133 (Enterobacteria phage vB_EcoM_IME540, complete genome) position: , mismatch: 5, identity: 0.8

caaccacgcagagcagacagacgct	CRISPR spacer
acaccacgcagagcagccagacgag	Protospacer
  ************** ******  

4. spacer 2.1|636964|25|NZ_CP032912|CRISPRCasFinder matches to MT446415 (UNVERIFIED: Escherichia virus TH44, complete genome) position: , mismatch: 5, identity: 0.8

caaccacgcagagcagacagacgct	CRISPR spacer
acaccacgcagagcagccagacgag	Protospacer
  ************** ******  

5. spacer 2.1|636964|25|NZ_CP032912|CRISPRCasFinder matches to NC_028847 (Enterobacteria phage QL01, complete genome) position: , mismatch: 5, identity: 0.8

caaccacgcagagcagacagacgct	CRISPR spacer
acaccacgcagagcagccagacgag	Protospacer
  ************** ******  

6. spacer 2.1|636964|25|NZ_CP032912|CRISPRCasFinder matches to NC_012741 (Enterobacteria phage JS10, complete genome) position: , mismatch: 5, identity: 0.8

caaccacgcagagcagacagacgct	CRISPR spacer
acaccacgcagagcagccagacgag	Protospacer
  ************** ******  

7. spacer 2.1|636964|25|NZ_CP032912|CRISPRCasFinder matches to MK310184 (Phage NC-G, complete genome) position: , mismatch: 5, identity: 0.8

caaccacgcagagcagacagacgct	CRISPR spacer
acaccacgcagagcagccagacgag	Protospacer
  ************** ******  

8. spacer 2.1|636964|25|NZ_CP032912|CRISPRCasFinder matches to EU863409 (Enterobacteria phage JS10, complete sequence) position: , mismatch: 5, identity: 0.8

caaccacgcagagcagacagacgct	CRISPR spacer
acaccacgcagagcagccagacgag	Protospacer
  ************** ******  

9. spacer 2.1|636964|25|NZ_CP032912|CRISPRCasFinder matches to MH051917 (Enterobacteria phage vB_EcoM_IME341, complete genome) position: , mismatch: 5, identity: 0.8

caaccacgcagagcagacagacgct	CRISPR spacer
acaccacgcagagcagccagacgag	Protospacer
  ************** ******  

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	57438 : 68343	9	Bacillus_phage(33.33%)	NA	NA
DBSCAN-SWA_2	1324754 : 1330071	8	Helicobacter_phage(75.0%)	integrase	attL 1315475:1315490|attR 1342070:1342085

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP032912|57438:68343|DBSCAN-SWA
AATAATGGGTTTTGAAAAAAGCATTTTAGGCAATTTAAACGGAGCACAAAAAATCGCCGCAAGCCACATTCAAGGGCCTTTGCTGATTTTAGCGGGAGCTGGGAGCGGTAAGACTAAGACTTTAACGAGCCGTTTGGCGTATTTGATTGGCGCTTGTGGCGTGCCTAGCGAGAACACTTTAACGCTCACTTTCACCAATAAAGCGAGTAAAGAAATGCAAGAAAGGGCTTTGAAATTGTTGAAAAACCAAGCCCTTATCCCCCCCTTGCTTTGCACTTTCCATCGTTTTGGTTTGCTGTTTTTAAGGCAACACATGAGCCTTTTAAAAAGAGCGTGCGATTTTTCGGTGCTAGATAGCGATGAAGTCAAAACGCTGTGCAAACAGCTCAAAATTTCAAACTTCAGGGCGAGCATTTCTCAAATCAAAAACGGCATGATGGATTTGAGCATGCAAGATAGCGAATGTCATAAAGCGTATGAGCTTTATCAAAACGCGCTCAAAAAAGACAATTTAGTGGATTTTGACGATTTGCTTTTTTTAAGCCTTAAGATTTTACAAGATAATGAAAAACTCGCCAAAGAAACTAGCGAGCGCTACCATTACATTATGGTAGATGAGTATCAAGACACGAACGCCTTGCAATTGGAGTTTTTAAAAAAATTGAGTTTCACGCACCATAATTTGTGCGTGGTGGGCGATGACGATCAGAGCATTTATGGTTTTAGGGGGGCTGATATTTCTAACATTTTAAATTTTTCCAAGCATTTTAAAGGGGCTAAGGTGGTGAAATTAGAAACCAACTACCGCTCTAGTGCTGAAATTTTAGCGTGCGCTAACGCCCTTATTAGCCACAACCAACACCGCCATGTTAAAACGCTTCAAAGTTTCAAAGGCTCGCATAAAAGCGTGGTTTGTAAAGAATATTTGACGCAAAAAGAAGAGAGTTTGGATGTGGCTTATCAAATCAAAGCCCTTTTAAAGAGGGGCGAAAATTTAGAAAATATCGCTATTTTGTATCGCTTAAACGGGCTTAGCCGCAGCATTGAAGAGAGCTTGAACGCTTTGAATATCCCCTATAGGCTCATTGGGGCGGTGAGTTTCTATGAAAGAGCCGAGATTAAAGACGCTTTGGCGTTCATGCATTTAGTGGCTAAAAAAGACGATCGCTTTTTTATCAAGCGCGTCTTAAACAAGCCCCCAAGAGGTCTTGGCAAGATCACTCAAGAATGGATTTTTTCTCTTTTAGATGATGAGGGTTTGAATTTAGAAGAAGCGTTAAAACTTGGGGTGTTTAAAGACAAATTAAACCCTAAAAACGAATACGCTTTGAAACAATTTATCGCTATGATAGGGCGTTTGAGGGAGGCTTTTGAAATTTCAGTAGAGGAGTTTTGCGCTCGGTTTTTAGAAGAGACTAACCTTTTAAAAAGCTATGAAAAAGAAGACAATTACGAAGAAAGAGAGGGTTTTGTTAAAGAGCTTTTAGCCTTATTGAAAGAGCATTTTAAAACTAACCCCACGCATTCTTTATTGGATTTTTTGAATGAAAGCGTTCTAGATACCCATAATACGGAAAACGCGCAAAAAGTGAGTTGCATGAGCGTGCATATGAGTAAGGGGTTAGAGTTTAAGCATGTGTTTGTGATCGGGTTAGAAGAAGGATTTTTCCCGCATAGGGGGTTCAATCAAGAAAGCGATTTAGAAGAAGAAAGGCGCTTGGCTTACGTAGCGATCACTAGGGCTAAAGAAGGATTGCAGCTCTCTTATGTCAAAGAGCGTTCGTATTTTGGGAGGAAAATCTCTTGCTCGCCCTCTGTGTTTTTAGAAGAAGCCAAGTTGCTCAAAAGCGATCAAACCCCTAAACAAAATCACCAAAAAGACGCACCCATTAAAGTGGGGGACTTGATTAGGCATAAGATTTTTGGCACCGGGAGGGTTTTAGGCGTAGAAAAAGGCTTGAGCGGTTTGTGCTTGAAAATCAATTGCGGAGGGAATGTCTATGATAAAATCTCAGAAAAATTTGTAGAAAAAGTGGATAACGAGTTTTGAAAATTTTAATCCTTTTTTTTATCTGTTTAAACGCATTGTTCGCCCTAGATTTAAATACGCTTAAAACAGGGATTAAAGAAATTTACCTCAAAGAATACAAAGACTTAAAATTAGAAATTGAAACCATTAATTTAGAAATCCCGGAGCGCTTTTCTCACGCTTCCATTTTAAGCTATGAATTGAACGCTTCTAACAAGCTTAAAAAAGATGGGGTCGTGTTTTTAAGATTGGAAAATGAGCCTAATTTACGCCTACCGGTGCGTTATAGCGTGATAGGCAGCATGCAGGCTTTTAAAAGCGTTAGCGCGATTAAAAAAGATGAAAACATCACCGCTAACAACACTCAAAAAGAACGCATTCCTTTTGGTGCACTTTCTAACCCCTTATTAGAGGGCGCGATTGATAAAGTGAGTGCGAAAAATTTTATCCCTCCTAACACGCTTTTAAGCGCGGATAAAACCCAAGCTTTAATCATCGTGCGTAAAAACGACATCATCACCGGGGTGTATGAAGAGGGGCAAATCAGCATAGAAATAAGCTTAAAAGCCCTAGAAAATGGCGCGCTCCATCAAATCATTCAAGCGAAAAATTTAGAAAGCAATAAAATCTTAAAAGCAAAAGTGTTGAGCAGCTCTAAAGCGCAAATCTTATAAAGGACATTCATGAAATTGGTTTTAGGCATCAGTGGAGCGAGCGGGATACCCCTAGCCTTGCGGTTTTTAGAAAAATTACCCAAAGAAATTGAAGTTTTTGTCGTGGCGTCTAAAAACGCGCATGTCGTGGCGTTAGAAGAATCTAACATCAACCTTAAAAACGCCATGAAAGATTTACGGCCTAGCGCTACTTTTTTTAATGAGCAAGACATCCATGCGAGCATCGCTTCAGGGAGTTATGGTATCCATAAAATGGCGATCATTCCAGCGAGCATGGACATGGTGGCTAAAATCGCGCATGGCTTTGGGGGGGATTTGATCTCTAGGAGCGCCTCTGTGATGCTTAAAGAAAAGCGCCCCTTACTCATTGCCCCTAGAGAAATGCCTTTAAGCGCTATCATGTTAGAAAATTTGCTCAAACTCGCCCATTCTAATGCGATCATTGCGCCGCCGATGATGACTTATTACACCCAGAGCAAGACTTTAGAAGCGATGCAAGATTTTTTAGTGGGGAAGTGGTTTGACAGCTTGGAAATAGAAAATGACTTATACCCACGATGGGGAATGAACTGATGCAAAAAATCGGCATTTACCCGGGCACTTTTGATCCGGTCACTAACGGGCATATAGACATCATCCACCGCTCCAGCGAATTGTTTGAAAAGCTCATTGTCGCTGTGGCGCATTCAAGTGCTAAAAACCCCATGTTCAGTTTAAAAGAGCGCTTAAAAATGATGCAACTCGCCACTAAAAGTTTTAAAAATGTAGAATGCGTGGCGTTTGAAGGGCTGTTAGCCAATCTGGCTAAAGAATACCATTGTAAGGTGCTAGTTAGGGGCTTAAGGGTGGTGAGCGATTTTGAATACGAATTGCAAATGGGCTATGCGAACAAATCCTTAAACCACGAATTAGAGACCTTGTATTTCATGCCCACTTTACAAAATGCGTTTATTAGCTCTTCTATCGTGCGATCCATTATTGCGCATAAGGGCGATGCGAGCCATTTAGTGCCTGAAGAAATTTATCCTTTGATTTCAAAGGTTTAAAAAATGTATGTGGTGTTAGAAGGCGTTGATGGCGTGGGCAAAAGCACTCAAGTAGGATTGTTAAAAGACCGGTTTAAAAACGCCCTTTTTACCAAAGAGCCAGGGGGGACGAGAATGGGCGAGAGTTTAAGGCATATCGCTTTAAATGAAAACATCAGCGAATTGGCCAGAGCGTTTTTATTCTTAAGCGATAGAGCTGAGCATACAGAAAGCGTGATCAAACCGGCACTAAAAGAAAAAAAGCTCATCATTAGCGACAGGAGTTTGATCTCTGGCATGGCTTATAGCCAATTTTCAAGCTTAGAATTAAACCTGCTCGCCACTCAAAGCGTCTTGCCTACAAAAATCATTCTTTTACTCATAGACAAAGAGGGCTTAAAACAGCGCTTAAGCCTTAAAAGTTTAGACAAAATAGAAAACCAAGGCACAGAAAAATTACTCACCATCCAGCAAAAGATCAAAACTCACGCTTACGCGCTAAAAGAAAAATTCGGGTGCGAAGTTTTGGAATTAGACGCTCAAAAAAGCGCTAAAAACTTGCACGAAAAAATCGCCGCTTTTATTGAATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATCTGCCCTTAAGCTTAAGAATAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACGCGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCTGGCAAAGAATTTGTGAAAATCCTGCAAGAACAGGGTTTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCTTTTTACTCGCATTCCGCCGCGCTTTTAAAAGGCTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATGTTGTTTCGTATGCCGGGAAAAGCTTGGAATTTCGCGCCAACAACCCACGGAATTTCACTTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGACATTATCACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATAGCGCTTTGCAGCGCGGATGAATGAGTTATAATTTTATTTTTTAAAAAAGGATGCCCATGAATAAAGTTCAATCCATTGAGCCTTTAATCGCTGATAAGTTCAACAATGAGTTAAGAAGTTATAACCTAGATTATAAACTAGAGCAAGAAAGCCTGAATAAAGAAATTGATGAAGCTTTAAAAAATTACGCTTCTAAAAGTGGGGGTTTAGGGGGTAACCGCCCTGATGTGAAACTTTTATTAAACACACAAGACCCCAACAGAAGAGTCCCTATTTTAATAGAATACAAAGGGCTAAAAGATAAGCTCATTAAATTAGACAAAAACAAACTGGTAGAAAACTTTAAAAACCATGAGCCTCATTATAAAAACATTAGAGAATACGCCCTAAATGGGGCTTTACATTACGCTAATGCGATTTTACACCACACGAGCTACACTGAATGCATCGCCATAGGCATCACAGGCTATAAAGACGATAAGGGCGGTATATGCTCTCAAATCGCTGTCTATTATGTGAATAAAAGCAATTTAGGCATGGGGATAGATGTTTCAAAAGGCGAGCAAGGTTATAGCGATCTATCTTTTTTAAGCCGTAAGCATTTTAACGACTTTATTAAACGAGTAGACACCCTTTCTTTAAGCGATAAAGATTTAGAACGCATTAGAGAAAAGAAAAACCAAGAAATAGAAGACTGCTTGACTCGTCTCAATAATGATATTTATAAAAAAGAAAAGCTTTCTTTAAGCGAAGAAGATCGCTTGTATTTAGTTGTTGCAAGCATTATCGCTAATTTAGGCATCTCTAATTTGGTAGCCCCCCTAAAAAAAGAAGATTTAAAATCTAGCGATGAGGTCCATCAAAGAGATGGCGACATCATGCTTAGAAAAATCCAATCCTTTTTAGAGCATAAGCATTTGCCCCAAGAAAAAAAGCAAAGCATTATTTCTTTATTAGAGCCTTTATTAAGAAATGAAAACGACAACAAAGCCATTGATGGCGAAAGCCGTTTGAAGCGCTGTTTTAGTGAAATCGTGGATAATTTGGGCATTTATTATAAAATCGGTCTTAGTACGGATTTTACCGGTAAATTGTTCAATGAAATGTATCGCTGGCTGGGTTTCACGCAAGACCAATTAAACGATGTGGTGCTCACACCCCCTTATGCCGCCACGCTTTTAGCCAGACTCTCCAAAGTCAATAAGGATAGTTTCGTGTGGGATTTTGCTACCGGAAGCGCTGGGTTATTAGTCGCAAGCATGAATTTAATGATAGAAGACGCTAAAAAGTGTATCACTAGTCTAGAGGAATTGGAACAAAAAATCGTTCATATTAAAGCCAAGCAACTTTTAGGCATAGAAAAATTACAAAAAATCTATATTCTAGCGGTGTTAAACATGATTTTAATGGGTGATGGGAGCAGTCAAATCTTAAACCAAGACAGCTTGAACGGTTTTGATGGCAAAGTCAATGACGAAGAGTTTAAAGCTAACGCCTTTGTTTTAAACCCGCCTTATTCCGCTAGTGGTAATGGCATGGTGTTTGTGGAGCAGGCTTTAGAAAAAATGCAAAGCGGTTATGCGAGCGTGATCATCCAATCAAGCGCCGGCAGTGGTAAAGCCAAAGAATACAATGTAAGGATTTTGGAAAAACACACGCTTTTAGCGAGCATTAAAATGCCATTAGATTTATTTATCGGTAAAAGCAGCGTTCAAACCCATATCTATGTTTTTAGGGTCAATGAAAAGCATGACGCTAAGCAAAGGGTGAAATTTATTAATTTCAGTAACGACGGCTACGCTAGAGCGAATCGCAAAAAAGCCAAAGCCAGCCACAATTTAAAAGACACGCATAACGCCAAAGAGCGCTACAACGAAGTCGTGGACTTAGTCCATATTGGCAAATCATGTTTGAAATTTTTAAGCGAAGATGACTACTATGAAAACACCATAGACCCCAAAAACGGGAGCGATTGGAACCAAAACAAACCCACCGACACCAAACCCGAATTAGAGGATTTTAAAAGAACGATAGCCGATTACCTTTCTTATGAAGTGGGCTTGATTTTAAAAAACCAAACGCCCCCAAAGTGATTGGCCCCCTTAGCAGCCAACTCAACGCTATTAAGTGGGGCGAGTTCAGATTAGGGGATTTGTTTGAAATGGAGCGTGGCACTCGCCTAACAAAAGCCAACAGAATTAAGGGGACTAGACCATTAGTAACCGCAGGATATGAAAACTATGGGGTTGCGGAATATATCAGTAACCACGATCAAAAAGTTTTCAAAGGTAATACTATTACTATTGACATGTTTGCAAACGCTTTTTATCGTTATAGTGAATATAGTGCAGATGATAATATATTGGTTTTAACCCCAAAATTCACAATGAGTTACAGAATAGGGTTGTGTGTTACCGCTAGAATTAACGCAGTTTTAAAGGCTAAATTTTCTTATGGTAAGCAATACCGCCAAAAAGATTTTAATGTAACGATTATTTCTCTACCCCTAAAACCCACCGCTAACGCTCAAACCCTTGATGGCATTGATTTTCATTTCATGGAAACATTCATAGCCGAACTTGAGCAGTGTCGGCTCGCCGAACTTGAGCAGTGTCGGCTCGCCGAACTTCAGGCTTATTTAAAAGCTACAGGGCTATCAAACACCACCCTTTCTAGCGATGAAGAAAACGCCCTTAATGTTTTCAATAATTCTATTGGGGGTAATACCCCATGCGGCTTAACATGGCAAAGCTTCAAATTAGGGGATTTGTTTGAAATATACACAGGGCGAGATATAATTATAGGGCAAACACAACAAGGTGATATTCCTTTAGTTAGTCATCAGCACGAAAACAATGGGATAACAAAAACAATAAAAGAAATACATAATAGAACCATATTTAACTATAAACAAACCATTGCTCTAGCAGATAGGGGCGTATTTTTAGCGACAACACAGAATAAAGATTTCCACATAGGAACACGAGTAAAAGCATTAGTATTTAAAAATGGCGAACAAGATAAAAAAACTAGATTATTTTTTACAACTTGTATTAATAAAAATCAGATTATGTTTTTAGATTATTCTTCAAACGCAACAAATAAACTTCCAAATTTAACGATTTCACTCCCCACCAACCCACATGGTAAAATTGATTTTAACTTCATGCGCACCCTTATAAACGCTCTAATGAAACAAACCATTCAAGGCGTGGCTCAATACTGCAACGCTAAAATCCAGGCTACAAAAGAAATCATCAGCCAAGAAACACCCATTCAAAAAGACTCGTTATTTTGAAAGAGATGAGGTCAAGCTTGTGTTACAATCAATTTAAAATTTGCTTGATTGAAGAGGGTTGAACCATGGAGCAGTCAGTCATTAAAGAGGGGACTTTAGCGTTAATTGATACTTTTGCGTATTTGTTTAGAAGCTATTACATGAGCGCTAAAAATAAGCCTTTAACCAACGATAAGGGCTTTCCTACAGGGCTTTTAACGGGGCTTGTGGGTATGGTTAAAAAATTTTATAAAGACAGAAAAAACATGCCTTTTATCGTGTTCGCTCTAGAAAGCCAGACTAAAACTAAAAGAGCCGAAAAATTAGGCGAATACAAACAAAATCGTAAAGACGCCCCTAAAGAGATGCTTTTACAAATCCCTATCGCCTTAGAATGGCTGCAAAAAATGGGTTTTGTTTGCGTGGAGGTGAATGGGTTTGAAGCTGATGATGTGATCGCAAGCCTAGCCACGCTAAGCCCTTATAAAACCCGCATTTATTCTAAAGATAAAGATTTTAACCAGCTTTTGAGCGATAAGATCGCGCTTTTTGATGGCAAAACGGAGTTTTTGGCGAAGGATTGCGTGGAAAAATACGGGATTTTACCGAGTCAATTCACGGATTATCAGGGCATTGTAGGGGATAGCAGCGATAATTACAAGGGGGTTAAAGGCATTGGGAGCAAGAACGCTAAGGAATTGTTACAGCGATTAGGGAGTTTGGAAAAAATCTATGAAAATTTAGACTTGGCGAAAAATTTACTCAGCCCTAAAATGTATCAAGCCCTGATACAAGACAAAGCAAGCGCGTTTTTAAGCAAAGAATTGGCCACTTTAGAAAGAGGATGCATTAAAGAATTTGATTTTTTAAGTTGCGCTTTTCCTAGCGAAAACCCCTTATTGAAAATTAAAGATGAATTGAAAGAATATGGTTTTATTTCTACCTTAAGGGATTTAGAAAATTCCCCTACGCCTTTAATTTCAGACAACACGCCCCTATTAGAAAACGCCCCCGCATCAGACAACGCCCCTAAAAAATCACGCATGATCGTTTTGGAAAGCGCCGCGCCTTTGAGCGCGTTTTTAGAAAAACTAGAAAAAACTAACGCAAGGATTTTTATGCGTTTGGCGCTGGATAAAGAAAAAAAAGTTTTGGCCCTAGCGTTTTTATTACAAGATCAAGGCTATTTTTTACCTTTAGAAGAAGCGTTATTTTCGCCCTTTTCTTCAGAGTTTTTGCAAAACGCTTTTTCTCAAATGTTACAGCATGCACAAATCGTTGGGCATGATTTAAAGCCCTTATTGAGCTTTTTAAAAGCCAAATACCAGGTGCCTTTAGAAAACATTCGCATCCAAGACACTCAAATTTTAGCGTTTTTAAAGAATCCGGAAAAAGTGGGGTTTGATGAAGTTTTAAGGGAATATTTAAAAGAAGAATTGATTCCGCATGAAAAAATCAAAGATTTTAAGACTAAAGCGGAGAAATTGGAACTTTTAAGCGTGGAATTAAACGCTTTAAAGCGTTTGTGTGAGTATTTTGAAAAAGGGGGGCTAGAAGAGGACTTGCTTATTTTGGCTAGAGACATTGAAACGCCGTTTGTGAAAGTTTTAATGGGCATGGAATTTCAAGGCTTTAAGATTGATGCGCCTTATTTCAAGCGCTTAGAGCAGGAGTTTAAGAATGAATTGCATGTTTTAGAGCGCCAAATTTTGGATTTGATTGGCGTGGATTTTAACCTCAATTCGCCTAAGCAACTTGGCGAAGTCTTGTATGAAAAATTAGGGCTTCCTAAAAATAAAAGCCATTCTACCGATGAAAAAAATTTGTTAAAAATCCTAGACAAGCACCCAAGCATCGCTTTGATTTTAGAATACAGAGAATTGAATAAGCTTTTTAACACTTATACCACCCCCTTATTGCGCTTAAAAGACAAAGACGATAAAATCCATACCACTTTCATCCAAACCGGCACAGCTACCGGGCGTTTAAGCTCGCATTCGCCTAATTTGCAAAATATCCCGGTGCGATCGCCTAAAGGCTTACTCATTCGTAAGGGCTTTATTGCCAGCTCTAAAGAATATTGTTTGCTAGGGGTGGATTATTCGCAGATTGAATTGCGCTTATTAGCCCATTTCAGCCAGGATAAGGATTTAATGGAGGCGTTTTTAAAGGGGCGAGACATCCATTTAGAAACTTCTAAGGCGTTGTTTGGTGGAGATTTGGCCAAAGAAAAACGATCCATCGCTAAAAGCATTAATTTTGGGCTGGTGTATGGCATGGGGAGTAAGAAATTGAGCGAAACTTTAAACATCCCTTTAAACGAGGCTAAAAGCTACATAGAAGCGTATTTCAAACGATTCCCTAGCATTAAAGATTATTTAAACCGCATGAAAGAAGAGATTTTAAAAACTTCTAAAGCCTTCACTTTGCTTGGGCGTTATCGGGTGTTTGATTTTACTGGCGTGAATGATTACATCAAGGGCAATTATTTGCGAGAGGGCGTGAATGCCATTTTTCAAGGGAGTGCGAGCGATTTATTGAAATTAGGCATGCTCAAAGTGAGCGAGCGTTTCAAAAATAACCCTTCAGTGAGGCTGCTTTTGCAAGTGCATGACGAATTGATTTTTGAGATTGAAGAAAAAAACGCCCTAGAGTTGCAGCAAGAAATCCAACGCATTCTTAATGATGAAGTGTATCCTTTGAGGGTTCCGCTAGAAACAAGTGCGTTTGTGGCGAATCGTTGGAATGAACTAAAAGGTTAG

Protein sequences of DBSCAN-SWA_1

>NZ_CP032912|57438:68343|61752_62328_+|WP_139522392.1|DBSCAN-SWA
MRCLTCLKLSFKPLCPNCLNDLPLSLRIRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGKEFVKILQEQGLNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNVVSYAGKSLEFRANNPRNFTFKGDENLDYFLLDDIITTGTTLKEALKYLKALNIKAHFAIALCSADE
>NZ_CP032912|57438:68343|59483_60140_+|WP_139522390.1|DBSCAN-SWA
MKILILFFICLNALFALDLNTLKTGIKEIYLKEYKDLKLEIETINLEIPERFSHASILSYELNASNKLKKDGVVFLRLENEPNLRLPVRYSVIGSMQAFKSVSAIKKDENITANNTQKERIPFGALSNPLLEGAIDKVSAKNFIPPNTLLSADKTQALIIVRKNDIITGVYEEGQISIEISLKALENGALHQIIQAKNLESNKILKAKVLSSSKAQIL
>NZ_CP032912|57438:68343|60149_60713_+|WP_131129966.1|DBSCAN-SWA
MKLVLGISGASGIPLALRFLEKLPKEIEVFVVASKNAHVVALEESNINLKNAMKDLRPSATFFNEQDIHASIASGSYGIHKMAIIPASMDMVAKIAHGFGGDLISRSASVMLKEKRPLLIAPREMPLSAIMLENLLKLAHSNAIIAPPMMTYYTQSKTLEAMQDFLVGKWFDSLEIENDLYPRWGMN
>NZ_CP032912|57438:68343|62360_64397_+|WP_139522393.1|DBSCAN-SWA
MNKVQSIEPLIADKFNNELRSYNLDYKLEQESLNKEIDEALKNYASKSGGLGGNRPDVKLLLNTQDPNRRVPILIEYKGLKDKLIKLDKNKLVENFKNHEPHYKNIREYALNGALHYANAILHHTSYTECIAIGITGYKDDKGGICSQIAVYYVNKSNLGMGIDVSKGEQGYSDLSFLSRKHFNDFIKRVDTLSLSDKDLERIREKKNQEIEDCLTRLNNDIYKKEKLSLSEEDRLYLVVASIIANLGISNLVAPLKKEDLKSSDEVHQRDGDIMLRKIQSFLEHKHLPQEKKQSIISLLEPLLRNENDNKAIDGESRLKRCFSEIVDNLGIYYKIGLSTDFTGKLFNEMYRWLGFTQDQLNDVVLTPPYAATLLARLSKVNKDSFVWDFATGSAGLLVASMNLMIEDAKKCITSLEELEQKIVHIKAKQLLGIEKLQKIYILAVLNMILMGDGSSQILNQDSLNGFDGKVNDEEFKANAFVLNPPYSASGNGMVFVEQALEKMQSGYASVIIQSSAGSGKAKEYNVRILEKHTLLASIKMPLDLFIGKSSVQTHIYVFRVNEKHDAKQRVKFINFSNDGYARANRKKAKASHNLKDTHNAKERYNEVVDLVHIGKSCLKFLSEDDYYENTIDPKNGSDWNQNKPTDTKPELEDFKRTIADYLSYEVGLILKNQTPPK
>NZ_CP032912|57438:68343|61189_61765_+|WP_139522391.1|DBSCAN-SWA
MYVVLEGVDGVGKSTQVGLLKDRFKNALFTKEPGGTRMGESLRHIALNENISELARAFLFLSDRAEHTESVIKPALKEKKLIISDRSLISGMAYSQFSSLELNLLATQSVLPTKIILLLIDKEGLKQRLSLKSLDKIENQGTEKLLTIQQKIKTHAYALKEKFGCEVLELDAQKSAKNLHEKIAAFIECVV
>NZ_CP032912|57438:68343|65667_68343_+|WP_139522395.1|DBSCAN-SWA
MEQSVIKEGTLALIDTFAYLFRSYYMSAKNKPLTNDKGFPTGLLTGLVGMVKKFYKDRKNMPFIVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVNGFEADDVIASLATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTEFLAKDCVEKYGILPSQFTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQDKASAFLSKELATLERGCIKEFDFLSCAFPSENPLLKIKDELKEYGFISTLRDLENSPTPLISDNTPLLENAPASDNAPKKSRMIVLESAAPLSAFLEKLEKTNARIFMRLALDKEKKVLALAFLLQDQGYFLPLEEALFSPFSSEFLQNAFSQMLQHAQIVGHDLKPLLSFLKAKYQVPLENIRIQDTQILAFLKNPEKVGFDEVLREYLKEELIPHEKIKDFKTKAEKLELLSVELNALKRLCEYFEKGGLEEDLLILARDIETPFVKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLGEVLYEKLGLPKNKSHSTDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGGDLAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGVNDYIKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNALELQQEIQRILNDEVYPLRVPLETSAFVANRWNELKG
>NZ_CP032912|57438:68343|57438_59487_+|WP_139522389.1|DBSCAN-SWA
MMGFEKSILGNLNGAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEMQERALKLLKNQALIPPLLCTFHRFGLLFLRQHMSLLKRACDFSVLDSDEVKTLCKQLKISNFRASISQIKNGMMDLSMQDSECHKAYELYQNALKKDNLVDFDDLLFLSLKILQDNEKLAKETSERYHYIMVDEYQDTNALQLEFLKKLSFTHHNLCVVGDDDQSIYGFRGADISNILNFSKHFKGAKVVKLETNYRSSAEILACANALISHNQHRHVKTLQSFKGSHKSVVCKEYLTQKEESLDVAYQIKALLKRGENLENIAILYRLNGLSRSIEESLNALNIPYRLIGAVSFYERAEIKDALAFMHLVAKKDDRFFIKRVLNKPPRGLGKITQEWIFSLLDDEGLNLEEALKLGVFKDKLNPKNEYALKQFIAMIGRLREAFEISVEEFCARFLEETNLLKSYEKEDNYEEREGFVKELLALLKEHFKTNPTHSLLDFLNESVLDTHNTENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPHRGFNQESDLEEERRLAYVAITRAKEGLQLSYVKERSYFGRKISCSPSVFLEEAKLLKSDQTPKQNHQKDAPIKVGDLIRHKIFGTGRVLGVEKGLSGLCLKINCGGNVYDKISEKFVEKVDNEF
>NZ_CP032912|57438:68343|64393_65602_+|WP_139522394.1|DBSCAN-SWA
MIGPLSSQLNAIKWGEFRLGDLFEMERGTRLTKANRIKGTRPLVTAGYENYGVAEYISNHDQKVFKGNTITIDMFANAFYRYSEYSADDNILVLTPKFTMSYRIGLCVTARINAVLKAKFSYGKQYRQKDFNVTIISLPLKPTANAQTLDGIDFHFMETFIAELEQCRLAELEQCRLAELQAYLKATGLSNTTLSSDEENALNVFNNSIGGNTPCGLTWQSFKLGDLFEIYTGRDIIIGQTQQGDIPLVSHQHENNGITKTIKEIHNRTIFNYKQTIALADRGVFLATTQNKDFHIGTRVKALVFKNGEQDKKTRLFFTTCINKNQIMFLDYSSNATNKLPNLTISLPTNPHGKIDFNFMRTLINALMKQTIQGVAQYCNAKIQATKEIISQETPIQKDSLF
>NZ_CP032912|57438:68343|60712_61186_+|WP_001169272.1|DBSCAN-SWA
MQKIGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLKERLKMMQLATKSFKNVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQNAFISSSIVRSIIAHKGDASHLVPEEIYPLISKV

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_139522389.1|57438_59487_+	DNA helicase UvrD	A7KV33	Bacillus_phage	1.2e-90	35.0
WP_139522390.1|59483_60140_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA
WP_131129966.1|60149_60713_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_001169272.1|60712_61186_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	1.1e-26	44.8
WP_139522391.1|61189_61765_+	dTMP kinase	Q2XUX0	environmental_halophage	8.4e-10	38.6
WP_139522392.1|61752_62328_+	ComF family protein	NA	NA	NA	NA
WP_139522393.1|62360_64397_+	N-6 DNA methylase	A0A2H4JBT5	uncultured_Caudovirales_phage	4.5e-74	34.0
WP_139522394.1|64393_65602_+	restriction endonuclease subunit S	A0A2H4J4K4	uncultured_Caudovirales_phage	5.9e-13	34.5
WP_139522395.1|65667_68343_+	DNA polymerase I	A0A142F1Q9	Bacillus_phage	4.6e-50	28.9

Sequences of DBSCAN-SWA_2

Nucleotide sequences of DBSCAN-SWA_2

>NZ_CP032912|1324754:1330071|DBSCAN-SWA
CTTAAAGATCCCTAGCGGCAAAAAAGAAAGCGATTTCATTGCACGCGTTTTCCAAGCTATCGCTCCCATGCACCGCATTAGCGTCAATACTTTCAGCAAAATCCGCTCTGATAGTGCCTTTTTGGGCGAGTTTGGGATCAGTCGCTCCCATAAGATCTCTGTTTTTAGCCACCGCATCTTCGCCCTCTAAAACCATAACCACCACCGGACCACTGACCATAAATTCTATTAAATCTTTAAAAAAGGGTCTCTCTCTGTGGATCGCATAAAAGTTTTCAGCGTCTTTAACGCTCAAATGCAAGCGTTTCATAGCAATGACTTCCAAGCCGTTACTCTCAAAGCGATCAATGATTTTGCCTACCACTTTTTTCTTAAGTGCATCAGGCTTAATAATAGACAGCGTTCTTTGTTTCAATTTAAACTCCTTGTGAATTGTTGATTATACAAAAACTTTTTAAAATATTACCCTTAAAATATTTTTTAACGCTTAAAGAACGCTTTAATCTCCTCAGCTTTGTTGGTTTTTTCCCAAGTGAATTCCTCTAATTCGCGCCCAAAATGCCCATAAGCTGAAGTGAGCGAATAAATGGGTCTTAACAAATCCAGGCTTTCAATAATGCCTTTTGGCGTGAGTTTGAAAACCGCTTTCACGCATTTTTCCAACTCCGCGCTTGAATATTTGCTCGTGTTATGCGTGTTCACATAAACAGACACCGGCTCTATCACCCCAATCGCATAAGCAAGCTGCACGGTCGCTTTATCGCAAACCCCACTCGCTACCAAATTTTTAGCCACATAGCGGGCCGCATAAGCCGCGCTCCTATCCACTTTGCTAGGGTCTTTCCCGCTAAACGCTCCCCCGCCATGCGGACAACTCCCCCCATAAGTGTCCACGATGATTTTTCTGCCTGTTAAGCCCGCATCGCCTTGAGGCCCACCGATAACGAATTTTCCTGTAGGATTGACAAAAAACTTAATATTGTCATGCAAATATTCTTTGGGTAAAACCTTATACACGATCTCTTCAATCACGGCTTCTTTTAAATGTTTTTGCGAAACTTCTGGGGAATGTTGGGTGGAAATAACAATCGTATCAATGCTTACAGGCTTGTTGTTTTCATAACGCACGCTCACTTGAGACTTGCCATCAGGCCTTAAAAAAGGCAGAGTGTTGTCTTTTCTTTTTTGAGCCAAAGCGAAAGTGAGCTGGTGCGCTAAATGAATGGGTAAGGGCATGAGCGTTTCAGTCTCTTTACACGCATAACCAAACATAAGCCCTTGATCCCCTGCCCCAATCTCGCCATCTTCTCTATCCACGCCTTGATTAATATCAGGGCTTTGCTCGCCAACGCCATTCAAAACCGCCGCGCTCCTGTAATCAAAGCCATAAAGAGCGTCTGTATAACCAATCTTTTTAACCACTTCTCTTGCAATCTCTTGCATAGGGGCATAAACAGAAGTTTTTAACTCGCCAGTGATCATGCAAAACCCGTTAGAAACTAAAGTCTCGCATGCGACTTTGGCTTTTTGATCGCGCTCAATGATGTAATCTAAAACCGCATCGCTGATTTGATCAGCCATTTTGTCAGGATGCCCCTCGGTTACTGATTCAGAAGTGAAAAGAAAACTATCTTTCATTGATTGTCCTTATTAAAATAATCATTCGTGTTCAAAATGGGCTTATTATAGCTTATTTCACAACTCCAACCAAACCAAACGCAAAAACCCTTAAAAAACACAAAAGCAAAAATCTTTTTCACGAGCCACAAGATAGGGGCTTATTTGAAAAAACCGAATGATTTTGGGCGTTCAAATACCCAAGCGGGGGGTTAATCTTTTTGTCTCACAAAATTAACAAGAATTTTTAAAAGCTAACGCATTTTTAAACCAACAAACGCCTAAAATAGGGCGTTAAAATAGGAAAGGAGCATTAAAATATGAGACAAAAAAACGAGACAGCAACAAGCTTCAACCAGCTTAAGGAAATTACACAGATCATGCAAGCGCAAAAAAGAAGCGCGCAAACTAACGCCAACGCTAACGCAAGCGAGATCACGCACCAAAGCGCGCTAACGCTTAAAGCTAGAGCGCGAGCCAAAAAAGGCGCTTTAAATCCCACTAAAAGAGCCTTTAGCGATCGACAAATTACCACGATTAGAGACAACTCACAAGCAAGCGATCAAAAACGCCTAAAAACCGAACAAGGCTTGAACTCAAGCTTAAGAGCTAAACAAAGCGATGAAGCCTTAAAACAAGGCTTAACAACACACCAAAACAACCAAAGGGGGCAAGAATGAAGCCTAACAAAAAACTTAACAAGCCTTTAGAAAAAAGGGCGGATCGTTTTGAGTGGTTTTTATTGATAGCGTGTAGCTTGATTTTAGCTATAGCTTACGCCGTGAAGGGGTTATTATGAAAAACGCGTTCACTTTATACAAGCGAGACTACAAGGGCGATGAAACGCTATACCTTAACTATTACGATAAGACTAATAAGCGTTTTAGAGTGAGCTTACGAAAAGCCACAGATTGCCTAAAAATGAATACCGATGAAGCTTTAGAATTTTTCAAAGACAAAAGCCTAAAAGAGATTTTAGCGTTTGTCAATCGTTTAGAAGCGATGAAAAACGCTAATAAGCGCGTTAAAAATGCCGAAAAACAAACGCACAGGATACAATCAAAGATTACCATACTCCAAGCGTTAAAACGCTTTCTAGCGTTAAAAATAGGCCTAAAACAAACGAGTATCAATTCTTTAGAAAATGTTCTCAATAGCATTTTTAGCGTGATGAGCTTACAAGAAAGCGATAAGCTTAAAAAAATCACACAAGAAAAGATCGTGCAATACCACAAAAAAACGCTAATTCTTTATAAAAGGAACACGATCCACAACCTAAACGCTAACCTAAAAAGCTTTTTAGCGTTTTGTAAGCAAGAACGCTTTATTGAGAAAAATCCTTATTATTCGATCACGCTCAAAAACGCGCAAGAAGCTAAAGCGATCGATCCTTTTAGTTTAGAAGAAGTTAAGACGCTCATAGAAAACGCACCAAGCTTGCGGCTAAAAGCGTTTTTAATGGTAGCGTTTCTTACAGGAATGCGCACCGGCGAGCAATTAGCTTTGATGTGGGAAGACATTGACTTCACCGAAAAAAAGATCGTTATTAACAAATCCTTAAACCTTTCAGGTGTTATCACAAGCCCTAAAAACAAACCAAGCATTAGAGAAGTGGATCTATTAGAGCCAGTGGAAAAAATCCTAAAAGAGCTAAAAGCAAGCGAACCGGCTGATAAAAAAATGATCTTTCTTAGCGTTCCTAAAAGGACTCAAGATTTTCAGCGAGCGTTTAAAAAACTATTGAAAGCCTTGAATTTAAAAGACAGGAAGCTTTACACCACGCGCCACACTTTCGCGAGCTTGATGCTAAGCCAGGGCGAAGAAGCCATGTGGATTAGCCAAACGCTAGGGCATAAAGATCTAAACACCACTTACAGCACTTACAGCCATTACATCCCTAAACAAGACAAAGAAAGGGCTGAATTTTTAAAGGGGATACTATGAAAGAAAACCACAAGGAGAACACCATGAAAATTTTTCATTACTTGACTTACCAGTTTATCAAGGAAAGCGATGCGGATTTAAGTTTTTTTGATTTCATCCAAAAATTAGAAAAGCTCCAAAAAACGCACGCGATTAAATCCAGCGTTTGCAATGTGAGAAATAAGCGCGTTACAAGCTATTCTATCCTACTCCAAAAAAAGGCGGTTTAACATGGAAGAATTAGAAAAATTACAGCCGATCGATTTAGAAGTTTTAAACGCGCTTTTTTATAAAGAAGCGCGTTTACCTAAAACAGCCGACAAGATTTCAAAAAATCTCAATATTGATTACTACTACACGCTTAAGATTTTCAACAAGCTTGAAAAAAAAGGCTTATGCGATCAATGGGTTATTAACAAAAAAAGGGAAAAAGACAAAAAAAACAACTATTACAAGGTTTGTTGCTTAAACGATCTTGGTAAAGATTTATGCACCTATTTGAAAGCCTTAAAAGGCTCTAAAACACACAAAAAGGATCCACAATGAACTACATCCTAAAACAACCAATGAAATTCGGCTATACGCAAATCTCTAATGAAATCTGCGATGATGAACGAGTCTCTGACATAGCGATAGCGATTTATTGTTATATCAAAAAGCACGCAACCACTTTCAGGCTATGCATTGAAGACATAGCCAAACGATTCAACCGAAACGCTAAAACGATTTACAAATACTTGAACGAGTTGAAAGAGTTAGGTTATATTGATTTTGAAAGGGAACGAAAAAACGACGGGACATTTGGGAAATTTTTTCAATTCATCATGGGGAATTTTTCTAAAAATCCAAGCAAAAAACAAGCCCAAAAAGCCTCTAACCACATGGAAAATAATTCCATGTGGATAAAACCGCAAAAAGAAGCCTCTAACGCCCATGATAGCGAAGCTCAATCCACAAGCATTTATTTTCCAGCGTTTACCTTAATAAAAGATCAAAATAAACATGAAAATATACGCGTGAGTGAAAATTTTTTTGATGAAGAATTTGCAGAAAAAAATCAAGTTAAGAAAGACATTAAAGATCTAAAAAATTCTAATAAAAATCTTGCGTTTAAAAGTTCGAGAGGTAAAAACCTTAGTTTGTTTGATCGTTTTAGCGCGTTTTTTAGCTCTATTTTAGGAAATTTAGACACCAAACACCTAAACCAATGCGAAGCCTTGAAAGCGCAAGGATGCGATTTAGTGGCTTGTATTAACCAATCCATCCGCCGAAACTATAACGAAATCTATGAGATGATGCATTTTGAAAAGCCAAGCTACAAAAATGAAGCCAAACAGAAAAACGACGAAGTCATGGATCATTTTGATGGCTATAAGCCTAATCCCAAGTATAACGGGCTTTGCATCTGGTAGGTTAAGAACATGCGAAGTTGGAATTACAAGCACGCTAATAGGAATTTCAAGCCTAAGGTTTGGACTAATAGCGTGTTACTTCAAAACGGGCTTTTAGAGATTTTTGAAGCGCTTAAAACGCTAGAAAACCGATCAAGAAGCCAAGTTTTAGAACGCTTGATTATTTTTTTTATAGAAACGCAGAAAGGACAAAGCGATGAGAAAGCATGGCAACGATCGAAACGAGCTTATAAAAGAACTCTTACTAACCAAACCGAAAAAAATAAGCTTAAGAGAAAGCAACTTGAAAGATCTAGAGAGAATCAAAAGAAAAAAGAATTACAAGTTTGCGCAAATCGTGCGTTTAGCTATTTTGAAAGGCCTTAA

Protein sequences of DBSCAN-SWA_2

>NZ_CP032912|1324754:1330071|1325233_1326391_-|WP_000655168.1|DBSCAN-SWA
MKDSFLFTSESVTEGHPDKMADQISDAVLDYIIERDQKAKVACETLVSNGFCMITGELKTSVYAPMQEIAREVVKKIGYTDALYGFDYRSAAVLNGVGEQSPDINQGVDREDGEIGAGDQGLMFGYACKETETLMPLPIHLAHQLTFALAQKRKDNTLPFLRPDGKSQVSVRYENNKPVSIDTIVISTQHSPEVSQKHLKEAVIEEIVYKVLPKEYLHDNIKFFVNPTGKFVIGGPQGDAGLTGRKIIVDTYGGSCPHGGGAFSGKDPSKVDRSAAYAARYVAKNLVASGVCDKATVQLAYAIGVIEPVSVYVNTHNTSKYSSAELEKCVKAVFKLTPKGIIESLDLLRPIYSLTSAYGHFGRELEEFTWEKTNKAEEIKAFFKR
>NZ_CP032912|1324754:1330071|1326690_1327050_+|WP_139523149.1|DBSCAN-SWA
MRQKNETATSFNQLKEITQIMQAQKRSAQTNANANASEITHQSALTLKARARAKKGALNPTKRAFSDRQITTIRDNSQASDQKRLKTEQGLNSSLRAKQSDEALKQGLTTHQNNQRGQE
>NZ_CP032912|1324754:1330071|1329714_1330071_+|WP_161593921.1|DBSCAN-SWA
MRSWNYKHANRNFKPKVWTNSVLLQNGLLEIFEALKTLENRSRSQVLERLIIFFIETQKGQSDEKAWQRSKRAYKRTLTNQTEKNKLKRKQLERSRENQKKKELQVCANRAFSYFERP
>NZ_CP032912|1324754:1330071|1328524_1328839_+|WP_139523152.1|DBSCAN-SWA
MEELEKLQPIDLEVLNALFYKEARLPKTADKISKNLNIDYYYTLKIFNKLEKKGLCDQWVINKKREKDKKNNYYKVCCLNDLGKDLCTYLKALKGSKTHKKDPQ
>NZ_CP032912|1324754:1330071|1328310_1328523_+|WP_139523151.1|DBSCAN-SWA
MKENHKENTMKIFHYLTYQFIKESDADLSFFDFIQKLEKLQKTHAIKSSVCNVRNKRVTSYSILLQKKAV
>NZ_CP032912|1324754:1330071|1328835_1329705_+|WP_139523153.1|DBSCAN-SWA
MNYILKQPMKFGYTQISNEICDDERVSDIAIAIYCYIKKHATTFRLCIEDIAKRFNRNAKTIYKYLNELKELGYIDFERERKNDGTFGKFFQFIMGNFSKNPSKKQAQKASNHMENNSMWIKPQKEASNAHDSEAQSTSIYFPAFTLIKDQNKHENIRVSENFFDEEFAEKNQVKKDIKDLKNSNKNLAFKSSRGKNLSLFDRFSAFFSSILGNLDTKHLNQCEALKAQGCDLVACINQSIRRNYNEIYEMMHFEKPSYKNEAKQKNDEVMDHFDGYKPNPKYNGLCIW
>NZ_CP032912|1324754:1330071|1324754_1325168_-|WP_033590152.1|DBSCAN-SWA
MKQRTLSIIKPDALKKKVVGKIIDRFESNGLEVIAMKRLHLSVKDAENFYAIHRERPFFKDLIEFMVSGPVVVMVLEGEDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHGSDSLENACNEIAFFFAARDL
>NZ_CP032912|1324754:1330071|1327165_1328314_+|WP_139523150.1|integrase|DBSCAN-SWA
MKNAFTLYKRDYKGDETLYLNYYDKTNKRFRVSLRKATDCLKMNTDEALEFFKDKSLKEILAFVNRLEAMKNANKRVKNAEKQTHRIQSKITILQALKRFLALKIGLKQTSINSLENVLNSIFSVMSLQESDKLKKITQEKIVQYHKKTLILYKRNTIHNLNANLKSFLAFCKQERFIEKNPYYSITLKNAQEAKAIDPFSLEEVKTLIENAPSLRLKAFLMVAFLTGMRTGEQLALMWEDIDFTEKKIVINKSLNLSGVITSPKNKPSIREVDLLEPVEKILKELKASEPADKKMIFLSVPKRTQDFQRAFKKLLKALNLKDRKLYTTRHTFASLMLSQGEEAMWISQTLGHKDLNTTYSTYSHYIPKQDKERAEFLKGIL

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1315475:1315490	attL	NA	NA	NA	NA
WP_033590152.1|1324754_1325168_-	nucleoside-diphosphate kinase	L7Y4C4	Megavirus	6.2e-23	45.0
WP_000655168.1|1325233_1326391_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	9.0e-120	56.6
WP_139523149.1|1326690_1327050_+	hypothetical protein	A0A1S5REX5	Helicobacter_phage	2.2e-32	73.1
WP_139523150.1|1327165_1328314_+|integrase	tyrosine-type recombinase/integrase	A0A1S5RF79	Helicobacter_phage	2.8e-182	86.1
WP_139523151.1|1328310_1328523_+	hypothetical protein	A0A1S5RGY6	Helicobacter_phage	1.2e-27	90.0
WP_139523152.1|1328524_1328839_+	hypothetical protein	A0A1S5RF85	Helicobacter_phage	1.8e-43	88.2
WP_139523153.1|1328835_1329705_+	helix-turn-helix domain-containing protein	A0A1S5RGV3	Helicobacter_phage	2.0e-135	78.3
WP_161593921.1|1329714_1330071_+	hypothetical protein	A0A1S5RHF1	Helicobacter_phage	2.3e-50	86.4
1342070:1342085	attR	NA	NA	NA	NA