CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040899	Georgenia sp. Z294 chromosome, complete genome	3 crisprs	csa3,DEDDh,DinG,cas4,WYL	0	1	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040899_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040899_1

192014-192097

Orphan

Consensus_repeat	Method
GTGGAGCCGACGCGCGGTCCCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040899_1

>merge|NZ_CP040899|1|192014-192097|CRISPRCasFinder
GTGGAGCCGACGCGCGGTCCCGCCGAGCCCGTCACCTCCCCGTCCGTCTCGCAGACGCGTGTGGAGCCGACGCGCGGTCCCGCC

>NZ_CP040899|1|1|192014-192097|CRISPRCasFinder
GTGGAGCCGACGCGCGGTCCCGCC	GAGCCCGTCACCTCCCCGTCCGTCTCGCAGACGCGT
GTGGAGCCGACGCGCGGTCCCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040899.1\|WP_139947433.1\|194263_194869_+\|DUF5063-domain-containing-protein	unknown	unknown	gnl\|CDD\|374737
NZ_CP040899.1\|WP_139947434.1\|194907_195693_+\|TSUP-family-transporter	unknown	unknown	gnl\|CDD\|182593
NZ_CP040899.1\|WP_139947418.1\|174659_175751_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|349398
NZ_CP040899.1\|WP_139947421.1\|184774_186625_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224208
NZ_CP040899.1\|WP_139072504.1\|176071_176710_-\|uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234653
NZ_CP040899.1\|WP_139947425.1\|189294_189927_-\|LytR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379163
NZ_CP040899.1\|WP_139072726.1\|186634_187366_-\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|181035
NZ_CP040899.1\|WP_139947438.1\|199289_201140_-\|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl\|CDD\|224423
NZ_CP040899.1\|WP_139947420.1\|176756_177209_+\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NZ_CP040899.1\|WP_139072740.1\|202454_204359_-\|4-alpha-glucanotransferase	unknown	unknown	gnl\|CDD\|376788
NZ_CP040899.1\|WP_139947427.1\|189982_190306_-\|type-II-toxin-antitoxin-system-VapB-family-antitoxin	unknown	unknown	gnl\|CDD\|227737
NZ_CP040899.1\|WP_168202604.1\|187397_187958_-\|DUF4190-domain-containing-protein	unknown	unknown	gnl\|CDD\|379388
NZ_CP040899.1\|WP_139072738.1\|201241_201613_+\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NZ_CP040899.1\|WP_139072735.1\|195823_197095_+\|aspartate-kinase	unknown	unknown	gnl\|CDD\|235843
NZ_CP040899.1\|WP_139072728.1\|187956_189258_+\|nitrate-reductase	unknown	unknown	gnl\|CDD\|132655
NZ_CP040899.1\|WP_139072739.1\|201657_202392_+\|DUF3152-domain-containing-protein	unknown	unknown	gnl\|CDD\|371483
NZ_CP040899.1\|WP_139072736.1\|197091_198156_+\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845
NZ_CP040899.1\|WP_139949219.1\|177212_178076_-\|NAD-dependent-protein-deacetylase	unknown	unknown	gnl\|CDD\|238700
NZ_CP040899.1\|WP_139947431.1\|193671_194271_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_CP040899.1\|WP_139947436.1\|198207_199257_-\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|227104

Protein	Function_ID	Function_description	E-value
NZ_CP040899.1\|WP_139947433.1\|194263_194869_+\|DUF5063-domain-containing-protein	gnl\|CDD\|374737	pfam16702, DUF5063, Domain of unknown function (DUF5063).	3.35662e-36
NZ_CP040899.1\|WP_139947434.1\|194907_195693_+\|TSUP-family-transporter	gnl\|CDD\|182593	PRK10621, PRK10621, hypothetical protein; Provisional.	2.47988e-40
NZ_CP040899.1\|WP_139947418.1\|174659_175751_-\|hypothetical-protein	gnl\|CDD\|349398	cd05379, CAP_bacterial, Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins. Little is known about bacterial and archaeal members of the CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain family. The wider family of CAP domain containing proteins includes plant pathogenesis-related protein 1 (PR-1), cysteine-rich secretory proteins (CRISPs), and allergen 5 from vespid venom, among others. Studies of eukaryotic proteins show that CAP domains have several functions, including the binding of cholesterol, lipids and heparan sulfate. This group includes Borrelia burgdorferi outer surface protein BB0689, which does not bind to cholesterol, lipids, or heparan sulfate, and whose function is unknown.	4.24719e-20
NZ_CP040899.1\|WP_139947421.1\|184774_186625_+\|hypothetical-protein	gnl\|CDD\|224208	COG1289, COG1289, Predicted membrane protein [Function unknown].	1.15845e-07
NZ_CP040899.1\|WP_139072504.1\|176071_176710_-\|uracil-phosphoribosyltransferase	gnl\|CDD\|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	3.34635e-114
NZ_CP040899.1\|WP_139947425.1\|189294_189927_-\|LytR-family-transcriptional-regulator	gnl\|CDD\|379163	pfam13399, LytR_C, LytR cell envelope-related transcriptional attenuator. This family appears at the C-terminus of members of the LytR_cpsA_psr, pfam03816, family.	1.65639e-11
NZ_CP040899.1\|WP_139072726.1\|186634_187366_-\|glutamine-amidotransferase	gnl\|CDD\|181035	PRK07567, PRK07567, glutamine amidotransferase; Provisional.	2.2016e-135
NZ_CP040899.1\|WP_139947438.1\|199289_201140_-\|prolyl-oligopeptidase-family-serine-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	1.07316e-53
NZ_CP040899.1\|WP_139947420.1\|176756_177209_+\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	3.37746e-59
NZ_CP040899.1\|WP_139072740.1\|202454_204359_-\|4-alpha-glucanotransferase	gnl\|CDD\|376788	pfam02446, Glyco_hydro_77, 4-alpha-glucanotransferase. These enzymes EC:2.4.1.25 transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan.	6.69898e-122
NZ_CP040899.1\|WP_139947427.1\|189982_190306_-\|type-II-toxin-antitoxin-system-VapB-family-antitoxin	gnl\|CDD\|227737	COG5450, COG5450, Transcription regulator of the Arc/MetJ class [Transcription].	6.46409e-07
NZ_CP040899.1\|WP_168202604.1\|187397_187958_-\|DUF4190-domain-containing-protein	gnl\|CDD\|379388	pfam13828, DUF4190, Domain of unknown function (DUF4190). This integral membrane domain is functionally uncharacterized. One of the membrane helices contains two GXXG motifs that are usually associated with dimerization.	4.67099e-13
NZ_CP040899.1\|WP_139072738.1\|201241_201613_+\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	1.49113e-37
NZ_CP040899.1\|WP_139072735.1\|195823_197095_+\|aspartate-kinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0
NZ_CP040899.1\|WP_139072728.1\|187956_189258_+\|nitrate-reductase	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	1.03232e-115
NZ_CP040899.1\|WP_139072739.1\|201657_202392_+\|DUF3152-domain-containing-protein	gnl\|CDD\|371483	pfam11350, DUF3152, Protein of unknown function (DUF3152). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.	2.11556e-34
NZ_CP040899.1\|WP_139072736.1\|197091_198156_+\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	0
NZ_CP040899.1\|WP_139949219.1\|177212_178076_-\|NAD-dependent-protein-deacetylase	gnl\|CDD\|238700	cd01409, SIRT4, SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.	2.51012e-118
NZ_CP040899.1\|WP_139947431.1\|193671_194271_+\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	7.77214e-121
NZ_CP040899.1\|WP_139947436.1\|198207_199257_-\|acyltransferase-family-protein	gnl\|CDD\|227104	COG4763, COG4763, Predicted membrane protein [Function unknown].	1.19855e-15

>NZ_CP040899.1|WP_139947427.1|189982_190306_-|type-II-toxin-antitoxin-system-VapB-family-antitoxin
MIFKAVGDGRPYPDHGVETTRAWAAVAPRQVRLDELVTTKRELDLRHLLAEDSTFYGDLFAHVVSWRGTLYLEDGLHRALRAALQQRLHVHARVLELNPDGTVVPPA
>NZ_CP040899.1|WP_139947425.1|189294_189927_-|LytR-family-transcriptional-regulator
MTTDLTEAQRRRAARRRHLQQRQTLIFGILITAMVAVALVAAAMWGGVIPSPFARPFSSPEPTDAEAPAVPCPPADALPAPFPEINANVYNATDQSGLAARTARGLAQYGVVIAQESNYGGSFEGVADIVAGPRGLQAAYTVAAIIPGSTVSLDGRDDATVDVILGGAFSEVPAPEAAGFDPNEPLAPPPGCSPVTVPDDDVVEEAPAAG
>NZ_CP040899.1|WP_139072728.1|187956_189258_+|nitrate-reductase
MAIWTVHGDGVRVGPGEVVAPQERLSWPRTIGIGAQHVVAMFGATFLVPLITGFPPSTTLFFSAVGTVLFLLITRNRVPSYLGSSFAFLAPIAAAQEVGGMPAALGGILITGALLAVIGLVVHFAGARWIDVVMPPIVTGTVVMLIGFNLAPSAWSNVSQAPPTALVTIAVVVLVTVLFRGILGRLAILVGVLAGYVVAVVRGEVDFTPVGEAAWVGLPTFTTPTFDLTLMGLFVPVVFVLIAENVGHVKSVAAMTGENLDDVTGRALFADGLATTLAGAGGGSGTTTYAENIGVMAATRVYSTAAYFVAAGVALLLSLSPKFGELINTVPPGVLGGAATVLYGMIGVLGARIWVQNKVDFADPVNLTTAAIALIVGIANYTWVAGEMRFEGIALGTAAALGVFHVMRSVARWRGTSAEAASPASVPDPSREH
>NZ_CP040899.1|WP_168202604.1|187397_187958_-|DUF4190-domain-containing-protein
MSLPFTRCLAAAQDIRSTGGSLGTSGRGILGGVSDGGWQAPGHEGGNRPEPEPYQSAPAAGQSSATPYAAPTPAYTPFPTPAPGAPLAFATSDRHRDRVLGGQGYETPAYRNDSFAAASMVLGVVGILVPGVCLLAIACGHYARHRLRRSYEGGRGLAVAGIVLGYATTAVWLAVALLYVSTRALL
>NZ_CP040899.1|WP_139072726.1|186634_187366_-|glutamine-amidotransferase
MKPFLLIATRSEDAAADSEYASILDLGGLEERDLHRLRLETTPLPDLDLDAYSGIIVGGSPFTSSVPTEFKSDTQLRVEAELGTLLDEVWDRDFPFFGACYGIGTLARHIGGVIDGTYSEPISAPLITLTEAGQADPLLAGVPEQFEAFVGHKEACTHLPDTAVVLASSEQCPVQMFRVRTNLYGTQFHPELTLDALVERMTVYRHAGYFPPEDFEEVRRAVSAADVSHARRVLRNFVERYAS
>NZ_CP040899.1|WP_139947421.1|184774_186625_+|hypothetical-protein
MSASSHVRGGASAQSGNTAAPRRPRGSPLLIVLMIIVVVPSVLLADSWGAGAAGIIGGLTGMFSLVAFLGGPLWPDLRVALILGPLLVVAAALPRLVAESSRPAAIALVVLLTFVAGLLPLIGPRFANAGMGLGMTTMFGYGYAPMGGADHEQIIAAAVAGVVVALVLRVLMGISDPSKPTREQVAAVLVAEDPASAAAGAFGTWLADRRQRWLADALEGGSRYRLAVRAAELSGRADPDAVAALRARAEDLAGRIKAKPARAKADTPSPDPARSPAAEPADGPLADAARALDTVEQAVDGRDTTPVHLDRDRGEQLKEAVLHPSARLRSVQVRHAFRTALAVLLMLLVTSRLDRGDPLVSTALLATFSILQATWSETAAKTRNKIVGVVAGSLTVAVVLLLVPSDYLVMVATVSLCLGLWYVVTRPALGSAFMVVVSVGFNSVSRDLDPVNLLLQYVGLTACAVLLGVVLGYVVIPGFRPPPLRERVEAATAATVAALRASATGTASRRPEDITVLRDAERLQDELVPDRDRLDSRQLADLDTLRTRLRNLTVLADATELTSEDVDLVTAELARHSPADDAAGPSGTASTVLWDLAHEAGAAERSLLASLPAEGR
>NZ_CP040899.1|WP_139949219.1|177212_178076_-|NAD-dependent-protein-deacetylase
MVAPGAETATPEPADVPATLAPVVEILSAATTTAALTGAGISTDSGVPDYRSPGSPPRRPMTHQEFLASDAQRRHYWARNHLGWRFLRAALPNAGHRALARLEHTGVVNGVVTQNVDLLHLRAGSHNVIHLHGRYDRVVCLQCGTVISRETYDAVLTALNPGWRERHIDDVELAPDADAALESTADFRIAPCARCGGVLTPDVVFFGGTTPRARVEAARAIVAEAEALLVVGSSLAVMSGLRFVRQAAKEGKPVVIINRGPTRGDALATLKVEMSTTRALTHLTEVL
>NZ_CP040899.1|WP_139947420.1|176756_177209_+|nucleoside-deaminase
MAVWNVAMDTALELAEHAARDGDVPVGAVVLDPAGRVLATAHNRCEVDNDPTAHAEMLAIRAAAAAVGSGRLEGCTLVVTLEPCTMCAGAIVLARLERVVLGAWDPKAGACGSVRDVVRDSRLNHRAEVVGGVEEERSARLLRDFFAARR
>NZ_CP040899.1|WP_139072504.1|176071_176710_-|uracil-phosphoribosyltransferase
MRLHVADHPLIAHKLTVLRDERTESPTFRLLVDELVTLLAYEATREVRTTQVEITTPVAAATGTHLASPRPLVVPILRAGLGMLEGMTRLLPTAEVGFLGLQRDHHTLEAITYANRLPDDISGRQVFVLDPMLATGNTLVAAIEYLLERGARDVTAICLLVAPEGLRTVEQTVGKRGEVKIVTAAVDERLDENAYIVPGLGDAGDRLYGVVD
>NZ_CP040899.1|WP_139947418.1|174659_175751_-|hypothetical-protein
MTLGATVLASTVTAAPTLPGWLLLPLEASGMPAHLTTPLTVTAPPERAEVMIDLADYVAAQETTKAPVAPLVAPEPPIEKVEPAPLVAEPAPVTTPEGETPVLVPDDAEATVPQVEETTEPVPAPDPEPEQLPAVVPSPEPEPSPEPEPEPEPVPSEPAPQPSQAPEPEPAPSTSPEPETTPIPAPTTPAPAPEPSPSPSPTPSPSPTPSPTPTPTPTPEPTPEPQPAGDAATARSTLLGLVNAHRANHGLPPLQYDGHLQNVAQNWANRLRTIDAVQHNPYYRSQVGCFGGTWGGCSELIIRNTGGAQMNFGSLLRWMHAWWVDSATHNQAMLDPRYTHVGYGFVWSESGTPYAVAVLAQRY
>NZ_CP040899.1|WP_139947431.1|193671_194271_+|recombination-protein-RecR
MYEGAVQDLIDELGRLPGVGPKSAQRIAFHVLAADAADVERLAHALTEVKSKVRFCAVCGNVSEAELCRICSDPRRSSDVLCVVEEAKDVVAIERTREFRGKYHVLGGAINPINGIGPDDLRIRELMTRLADGTVTEVILATDPNIEGEATATYLARMLRGMGVPVSRLASGLPVGGDLEYADEITLGRAFEGRRRIDA
>NZ_CP040899.1|WP_139947433.1|194263_194869_+|DUF5063-domain-containing-protein
MPEHNPVRAAEAAAEVADLRALAAAMAAESERYLATVTEVAAGAHPDAAMSLLLLAVADLSAAGARLGAVVDVVPPERFEPDDGTEPDTDPLRLGLANLLEGLDEYREVPDPLVDNVSVTATLSADLAEVAHALRQGLQHHRAGNDVEALWWWQFSYLSNWGDRAASALRTLLSVLSHVRLDVPADVAADAEFDALHAEID
>NZ_CP040899.1|WP_139947434.1|194907_195693_+|TSUP-family-transporter
MCPVPPDLDVLTLVLLLLAALTAGWVDAVVGGGGLIQLPALLLVPGISPVEALATNKVGSIMGTSVSSLTYYRRVGPDLRTAAPMALAALAGAVGGAALAAQIPAELFTPIILVVLVAVAAWTIARPRIGAQTDLRWTGRGHHLAAAGLGLVIGAYDGLLGPGTGTFLVISLVSVLGYAFLPATALAKIVNFATNLGALIFFVPYGAVLWGLGLALGLANLTGGYIGARMAVAKGSGFIRVVFLVVVLALITRLGWDVLTR
>NZ_CP040899.1|WP_139072735.1|195823_197095_+|aspartate-kinase
MPLVVQKFGGSSVADATSLKRVAKRIVETQEAGNDVVVVVSAMGDTTDELLDLAASVTDSPSERELDILLTAGERISMSLLAMAISELGVEARSYTGQQAGVLTDAAHGKASIVGVVPERIARTIEEGGVAIVAGFQGVSETMDVTTLGRGGSDTTAVALAAALGADVCEIYTDVDGLFTADPRIVPTARQITDITSEETLEMAAHGAKILHLRAVEYARRYGVPIHVRSSFSNKIGTWIRTDDSSEESSMEEPIIAGVAHDRSQGKITVMGVPDVPGAAARLFAVVAEAGANVDMIVQNVSSAATGLTDISFTLPEADGPSTLAALRAAAGDLGYSDLRYDDQIGKLSLVGAGMRSHPGVSARLFGALSDAGINIEMISTSEIRISVVTRAESLDGAVRAVHTAFDLDSSESEAVVYGGTGR
>NZ_CP040899.1|WP_139072736.1|197091_198156_+|aspartate-semialdehyde-dehydrogenase
MSEQARGVNLAVVGATGQVGAVMRRILEERDFPVASIRYFASARSAGTTLPWKGQDVVVEDVATADLAGIDIAVFSAGGATSKEQAPRFAAAGALVVDNSSAWRKDPQVPLVVSEVNPEALEDIPTGIVANPNCTTMAAMPTLKVLHEEAGLKRLVVSTYQAVSGSGLAGVRELDTQVRAAVEQDPTALVHDGSAVTLPEPQTYVAPIAFDVVPLAGSIVDDGSEETDEEQKLRNESRKILGLPDLAVSGTCVRVPVFTGHSLSVNAEFERPITPERARELLAGAPGVELADVPTPLAGAGQDATFVGRIRQDQSVEGGRGLALFVVGDNLRKGAALNTIQIAELLAERLLARA
>NZ_CP040899.1|WP_139947436.1|198207_199257_-|acyltransferase-family-protein
MLQPTDQTSTRLDWVDLAKAVAIVLVVLYHVGGTGAGRLLPGADSWAVDGWRLVNSALLPVRMPLFFLASGVLAARALERGWRRLLRPRVGNLLWPFLLWSVVFALVTGFAYAPEDPLGYARDNLAAIPVGGTAYWYLSVLVVLFVTARVLRRFGSSLLVLATVAVGVAPLVAPALADVVGEAAATNVARVCYFAVWYFIGCFGRPLVERVAGLAPLPLLAVAVPAYVGLVLLVYVRGTSVDLSAVMSLVGLTAALVLSAWAARAGWVRRLARYLGARTLAIYVLHPILLNLLVVVARESGWVAPGSPLFALLLVPLLSLALTAAATGLYDLSGRVGLGWLFTLPGRRA
>NZ_CP040899.1|WP_139947438.1|199289_201140_-|prolyl-oligopeptidase-family-serine-peptidase
MSRLSRPPHCRTLGHRTDGGWSPPAWEQRFRAGEVEVPEWARDAPDRACVVATVDGRPQVHSWQASTSLLLPATDRPAGTTEATIDPPGDWLWWFDDTDGDEYGVWRRQRFGTPPGRATETPIPLPPAYGAGLHLARDGTGVVGRSDPDHGTTIHQIFLGPLAATSSPVLLYAGDGDAEASALSDDGNLLAVGHAEHGDARHPAVRVLAADTGARVADLTDGPGLGVWALAFAPVPGDTRLLVLHERTGVPRAAVWDVVGGAWRELALDVDGEVADAVWYPSGDAVLLAVDHHARTRLYRHDLRTGRSTVVGPTTGTVEEATARPDGEVWFSWSSAAQPPALRTTRSERPLIVPVGPRPRPSVEVRDVEVEGPGGTIHSLLRLPTGGQAPYPVVVDVHGGPADHRTDSFSPTLAAWVDQGFAVLSVNFRGSTGYGTRWRDGIEGQVGLVELADIAAVHDHLVAAGTLDPARSVLAGASWGGYLTLLGLGTQPERWSLGLADVPVADYVAAYEDETAQLQAFDRALFGGSPEEVPAAYAAASPITYVEDVRAPVLVLAGLNDPRCPLRQVERYVDALRRRGGTVELYQFAAGHGSQVDAERIRQLRLQLDFVRRHLG
>NZ_CP040899.1|WP_139072738.1|201241_201613_+|thioredoxin
MATTDVTASTLEQTITDNDIVLIDFWAEWCGPCKRFAPIYEKASEEYTDIVFAKVDTEAEQELAAQAGITAIPTLMAFREGVLVFSQAGALPGPQLEKLIEQVKGLDMDEVRTKVAEAQAQQG
>NZ_CP040899.1|WP_139072739.1|201657_202392_+|DUF3152-domain-containing-protein
MTRGSRLVPVLAWLLAVGATTGFIAPPDDGAHKVVAGRQAAVEVPPSKSPTLGFVPEQGGLWRLEIPHDAGGDVRTVRGRSDPPREAGRTVSVRVLVEVGLGIDGQEFARQVMATLNDERGWGHDGSIVFARTDGEADVDVTLASPATTDALCAPVATGGRVSCGRVGFAVLNAERWAHGAEPFLEAGGTVAEYRRYLVSHEVGHVLGQAHVRCPVPGAPAPVMLQQTLGLDGCLPNGWPALGG
>NZ_CP040899.1|WP_139072740.1|202454_204359_-|4-alpha-glucanotransferase
MSQFTRPLLHPVDDAPSTERGVDPAALAARGVAVPYYDAFGVLRHTPAETLARLAARLSPAPPPAPLVATPGRWHPELHGRVELEDGDVIDVAGALPADAVGYHHLLGPDGSRRLVLAAPEHLPQPGRTWGWAVQLYAARTDASWGIGDFADLETIARRARQSGAGMVLISPVHATAPTAHQTNSPYSPSSREWLNLQHVAVGQAPDAELVDLSDLAAKGRALNSERRIDRDRVWELKLTGLRRIWEAIGRRLPREAERFVTEAGEDLARFATYCVITEELGQPSWREWPEPLQRPDSPAVLAVRERAASEVAFWSWCQWIADLQFARACSAGVDVVADLAVGFDSCGADAWVYQDAIATGFEVGCPPDRHNREGQRWGLPPLDPDALVRMDLEPFVKMVRAGLRHAGALRMDHVMQLWRLFWVPSDRTAHVGAYVHYPVDALLAVLRIEAHRAGAWVCGEDMGTVAEGVRETMADIGMLGYRAAMRTRPGDNPVQSMATSSTHDQVTVAGCVTGSDTLDLEAIGKAFDPEHAARQTRDLRRQAGIDEHKAGAEVTEAEIADAVLAQYSRVAHSPSLVAVVTLDDAGAVAERPNMPGTVDAWPNWRLGLPGGVTGVLDGELAGRIATLMRGAGR

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Crispr_ID: NZ_CP040899_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040899_2

575446-575608

Orphan

Consensus_repeat	Method
CGCCTGACCCCCAACTCCCTCTGGGACGCCCCCTGGCGCCCGAGGACGCCCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040899_2

>merge|NZ_CP040899|2|575446-575608|CRISPRCasFinder
CGCCTGACCCCCAACTCCCTCTGGGACGCCCCCTGGCGCCCGAGGACGCCCCGGGCGCGGGGCCGTGGCTCCGCAAAGGGGTGTCCCAGACAAGGGGTCCGGAGGCGGCGCGCCTGACCCCCAACTCCCTCTGGGACGCCCCCTGGCGCCCGGGGACGCCCCG

>NZ_CP040899|2|2|575446-575608|CRISPRCasFinder
CGCCTGACCCCCAACTCCCTCTGGGACGCCCCCTGGCGCCCGAGGACGCCCCG	GGCGCGGGGCCGTGGCTCCGCAAAGGGGTGTCCCAGACAAGGGGTCCGGAGGCGGCG
CGCCTGACCCCCAACTCCCTCTGGGACGCCCCCTGGCGCCCGGGGACGCCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040899.1\|WP_139072224.1\|565132_566107_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224094
NZ_CP040899.1\|WP_139947743.1\|575764_576826_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040899.1\|WP_139947735.1\|566106_567870_+\|dipeptide-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224048
NZ_CP040899.1\|WP_139947730.1\|556922_557657_+\|DUF1345-domain-containing-protein	unknown	unknown	gnl\|CDD\|377769
NZ_CP040899.1\|WP_139072223.1\|580741_581203_+\|flavin-reductase	unknown	unknown	gnl\|CDD\|376575
NZ_CP040899.1\|WP_139947739.1\|571045_573832_+\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|225669
NZ_CP040899.1\|WP_139947737.1\|567866_571049_+\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|225669
NZ_CP040899.1\|WP_139072150.1\|587310_588258_-\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|274635
NZ_CP040899.1\|WP_139947744.1\|577230_579138_+\|translational-GTPase-TypA	unknown	unknown	gnl\|CDD\|224138
NZ_CP040899.1\|WP_168202630.1\|579149_580709_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274584
NZ_CP040899.1\|WP_139072164.1\|563499_565023_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223674
NZ_CP040899.1\|WP_168202631.1\|581237_582989_+\|vanomycin-resistance-protein-VanB	unknown	unknown	gnl\|CDD\|377286
NZ_CP040899.1\|WP_139947733.1\|561467_563309_+\|ABC-transporter-family-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173866
NZ_CP040899.1\|WP_139072152.1\|584986_586282_+\|citrate-synthase	unknown	unknown	gnl\|CDD\|99867
NZ_CP040899.1\|WP_139947728.1\|556267_556876_+\|thymidine-kinase	unknown	unknown	gnl\|CDD\|235272
NZ_CP040899.1\|WP_139947748.1\|586466_587318_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040899.1\|WP_139947741.1\|573834_574773_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP040899.1\|WP_139947732.1\|557759_561227_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143443
NZ_CP040899.1\|WP_139072154.1\|583363_583681_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|224069
NZ_CP040899.1\|WP_139072153.1\|583683_584823_+\|succinyldiaminopimelate-transaminase	unknown	unknown	gnl\|CDD\|236119

Protein	Function_ID	Function_description	E-value
NZ_CP040899.1\|WP_139072224.1\|565132_566107_+\|ABC-transporter-permease-subunit	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	8.91266e-88
NZ_CP040899.1\|WP_139072164.1\|563499_565023_+\|ABC-transporter-permease-subunit	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.14253e-48
NZ_CP040899.1\|WP_139947735.1\|566106_567870_+\|dipeptide-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	0
NZ_CP040899.1\|WP_139947730.1\|556922_557657_+\|DUF1345-domain-containing-protein	gnl\|CDD\|377769	pfam07077, DUF1345, Protein of unknown function (DUF1345). This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.	2.42305e-15
NZ_CP040899.1\|WP_139072223.1\|580741_581203_+\|flavin-reductase	gnl\|CDD\|376575	pfam01613, Flavin_Reduct, Flavin reductase like domain. This is a flavin reductase family consisting of enzymes known to be flavin reductases as well as various oxidoreductase and monooxygenase components. VlmR is a flavin reductase that functions in a two-component enzyme system to provide isobutylamine N-hydroxylase with reduced flavin and may be involved in the synthesis of valanimycin. SnaC is a flavin reductase that provides reduced flavin for the oxidation of pristinamycin IIB to pristinamycin IIA as catalyzed by SnaA, SnaB heterodimer. This flavin reductase region characterized by enzymes of the family is present in the C-terminus of potential FMN proteins from Synechocystis sp. suggesting it is a flavin reductase domain.	3.21305e-32
NZ_CP040899.1\|WP_139947739.1\|571045_573832_+\|FtsX-like-permease-family-protein	gnl\|CDD\|225669	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	6.60842e-09
NZ_CP040899.1\|WP_139947737.1\|567866_571049_+\|FtsX-like-permease-family-protein	gnl\|CDD\|225669	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	0.00133833
NZ_CP040899.1\|WP_139072150.1\|587310_588258_-\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl\|CDD\|274635	TIGR03535, DapD_actino, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. This enzyme is part of the diaminopimelate pathway of lysine biosynthesis. This model represents a clade of the enzyme specific to Actinobacteria. Alternate name: tetrahydrodipicolinate N-succinyltransferase.	3.70049e-172
NZ_CP040899.1\|WP_139947744.1\|577230_579138_+\|translational-GTPase-TypA	gnl\|CDD\|224138	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].	0
NZ_CP040899.1\|WP_168202630.1\|579149_580709_+\|hypothetical-protein	gnl\|CDD\|274584	TIGR03445, mycothiol_MshB, N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase. Members of this protein family are N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase, also called 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase, the MshB protein of mycothiol biosynthesis in Mycobacterium tuberculosis and related species. [Cellular processes, Detoxification].	3.874e-56
NZ_CP040899.1\|WP_168202631.1\|581237_582989_+\|vanomycin-resistance-protein-VanB	gnl\|CDD\|377286	pfam04294, VanW, VanW like protein. Family members include vancomycin resistance protein W (VanW). Genes encoding members of this family have been found in vancomycin resistance gene clusters vanB and vanG. The function of VanW is unknown.	1.40453e-51
NZ_CP040899.1\|WP_139947733.1\|561467_563309_+\|ABC-transporter-family-substrate-binding-protein	gnl\|CDD\|173866	cd08501, PBP2_Lpqw, The substrate-binding domain of mycobacterial lipoprotein Lpqw contains type 2 periplasmic binding fold. LpqW is one of key players in synthesis and transport of the unique components of the mycobacterial cell wall which is a complex structure rich in two related lipoglycans, the phosphatidylinositol mannosides (PIMs) and lipoarabinomannans (LAMs). Lpqw is a highly conserved lipoprotein that transport intermediates from a pathway for mature PIMs production into a pathway for LAMs biosynthesis, thus controlling the relative abundance of these two essential components of cell wall. LpqW is thought to have been adapted by the cell-wall biosynthesis machinery of mycobacteria and other closely related pathogens, evolving to play an important role in PIMs/LAMs biosynthesis. Most of periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the LpqW protein. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	2.04881e-90
NZ_CP040899.1\|WP_139072152.1\|584986_586282_+\|citrate-synthase	gnl\|CDD\|99867	cd06114, EcCS_like, Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some type II CSs including EcCS are strongly and specifically inhibited by NADH through an allosteric mechanism. Included in this group is an NADH-insensitive type II Acetobacter acetii CS which has retained many of the residues used by EcCS for NADH binding.	0
NZ_CP040899.1\|WP_139947728.1\|556267_556876_+\|thymidine-kinase	gnl\|CDD\|235272	PRK04296, PRK04296, thymidine kinase; Provisional.	1.19364e-59
NZ_CP040899.1\|WP_139947741.1\|573834_574773_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	8.33445e-93
NZ_CP040899.1\|WP_139947732.1\|557759_561227_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143443	cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA. The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes.	0
NZ_CP040899.1\|WP_139072154.1\|583363_583681_+\|4Fe-4S-binding-protein	gnl\|CDD\|224069	COG1146, COG1146, Ferredoxin [Energy production and conversion].	1.73069e-11
NZ_CP040899.1\|WP_139072153.1\|583683_584823_+\|succinyldiaminopimelate-transaminase	gnl\|CDD\|236119	PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed.	0

>NZ_CP040899.1|WP_139947741.1|573834_574773_+|ATP-binding-cassette-domain-containing-protein
MRDLTGEPDILCQGLVRIFSTEGVEVQALQGLDLRVDRGDVVAIVGASGSGKSTLLTILSGLDRPTGGTAVVAGTDLATMSRADRVHYQRHTVGFVWQQTSRNLLPYLTAAENIAVPLVLSGAKARAERVEELLELLGIEHCRDRRPEQLSGGEQQRTAIAVALANSPRVLLADEPTGELDDATSAEVLEALRGASERLGVTVLIVTHDPTVSEHVRRTVQIRDGRTATEVLRRTERDDSGAEVHVAEEFAVLDRAGRLQLPEEFVSALDLRERVRLALEPDHVGVWPDGSSRTSPPTASGRAGHEEERTDA
>NZ_CP040899.1|WP_139947739.1|571045_573832_+|FtsX-like-permease-family-protein
MTGLLRLTARQATAHKAVPVALVLLVLLVSGVVTAWPRLLAGVDDRQTTHEIAGASPLARDVVAVLPDTWPDLPAPAPGTTPFAPEVEESLGGTLVALEELRAAQPEPLRSMLGDPLFWVATPPFDVQAPPDPVIGTQRLSLKVDPQLGEHVELTAGRWPEPPTHVDPYAGLSDAERISLTLDEETALVRQAIAAGGPLEVVLAAPAAEALGWEVGTERRVVGNTVPVLLTGTFTALDADDGFWVHNPQSAEPYLVDDLNLGTSALAAAYVSPAWDGRLPTQFPVSSVRTQLWYPVEVGALAARDVDDAAAQLTRFTAPQTLGTGETGPLPVRFASDLGGVLDRVAQQQAVTSTVLAIIAAGPLGVTLAVFLLAARLLVARRRPGLALMAARGGSGRQLRSMLALEGLVLSLPAAAAGAVLAVLLLPGRTRPADLLLTGLVALVPAVMLAATTSPRGLRESRADLGRRPGRRRWVVEALVLGVTLAALVLLLQRGVEPGAGETDLLLTTVPLLLAVATCVLVLRAYPLPVRALAGVLRRRRGVTAFLGSARAVRDPAGGLVPAVALVIGVSVAMFSVVLSSTIEAGVQTTAWRAVGADLRLTGPIFDEEHVAEIAAVPGVAAVASIGDAGTVSVSGERLDLAVLDPDDVRAVQADGVGIATLPTALTAGPGSGDAVPAVLSAGAADTLGAGVGDRLEVAVGDGLALDVVGVMDALAGAGTTGDVLLDAAAFTEATGRSVLPRTLLLDVADGQDPTTVLDRVREVEPVARAQNPAGDAGNFLASPMAGGMNAALAVAVVLSLVLVLVAVVMTQLMGAPARGRLLAVLRTLGLDRRQARGIVAWELAPLAVVSVVAGGVLGVLVPWVVLGAMDLTALTGGAEQPALVVDPVSAGAVLGGVLVVTAAAVLVSTMMSSRADVATELRMGEET
>NZ_CP040899.1|WP_139947737.1|567866_571049_+|FtsX-like-permease-family-protein
MTMGVARLLARRARAQPGTLLTLLVLTATVAAILAGTVGYTRAAGVATVRSTLTEAAPRDAGIQVQTRLAADPATQDAAVRRTLSRLLPADGLAVSRQLWTEPVAASVGEKRVRVLLAEVPAGAEPDAGPLATGEVLVPEQTAADAGLTPGKRLDVAGTSLTVAGTWRAADERTWFADPVVAAGTDGSALGPLLASAETVGAAVDVPFVRWTVYPDPAALTVADLPRLAEGLSGLDFALRDDDAVAVRGLTLTGDLAGTVADLEEATGTAAAVGLVPVALLGVISLVALVQVVRLLGQTRARETEILVARGSSARQITAWSAAELGVVCVLGAGAGTTLAALVVGRLDGGEAQRPVILTVGAAVAVVALLAGTVVAGLQARAAARRTATDRSGRLRGAAAAGTLVLTGAGAALSTWQLLRHGTPLLDDGGADVLAVLSLGALLAALAVSALALLGPLARVVAGLLARRRGLVGVFAARQVSRRVRAYAVPLVLVVLTVGATTVSASFAGATAVQREHVAALATGADVRVELPAGTTSRLARPQSVSAVPYRELPGVSAAGVVLREAGRFGEVPVALTALPAGRLDDLTRLPDGLGLTGATAGLATAAPGVALPDGARALDVTVRASLAAAEGAQDVLEAEAASLLDRLVTLDGLSPEEAAAVVADELARLREGDFSLAAALWLADADGALSMLDVGELPADPDGQDALVGPEPAEHRLRVALPPGGPYRVVALDLAVSGPRYGSVFTYDVASLAADGADLPLGTWAPSDALGPAVDVEPPLGLRGALPAGTDTAEARLVPADVPAAVPAVVTAHLAATADLAVGDALPLALAGTSADLTVTAVADALPGGLEEDAVLVDLATLGQHVLARQPGPVLPRQVWLAVAADTDAADVGSAARELAGREAQVEVAGTGRTDSAASVRQAFWIAAGGSALLALTGVAAVVLALARERRSEVMVLRALGLPPAAQARSRAAELLGVGALGAVLGVVAGWLASAVLVPTLARASATDVSPLPLGGRLDVLPALGVLAVLAGGLLVVGAALAARVRAQALDAEYREEVR
>NZ_CP040899.1|WP_139947735.1|566106_567870_+|dipeptide-ABC-transporter-ATP-binding-protein
MSTLSEQSSEPVLTFNDLDVRFRTEFGSVHAVKGISLEVKPGEVVALVGESGSGKSVTSMTALGLLPKNARTSGRITVGENSVRDLDDRALRRMRGNDVAMVFQEPMTALNPVLTIGTQLTEALELHGIAYGAAADERAAELLRMVGIPEPERRLKQYPHELSGGQRQRVVIAIAISCDPKVIIADEPTTALDVTVQADILDLLRSLKDKLNTGILLITHNMGVVADMADRVAVMFKGNIVESGPVEQVLVSPEHPYTKRLLDAVPHLGRGRDQLGISQVDAPAVEEGETAALRMENLVIEYQRAGKPPFRAVDDVSFSVRQGEVVGLVGESGSGKSTIGRCALGLIPAASGTIRLFGEDFGAMGRKDAKSLRKRIGVIFQDPAASLNPRLPIGEIIAEPMVVHKVGDKRSRMAKVHELLEAVELPRSVYNRYPHELSGGQRQRVSVARALVLEPELLVADEPTSALDVSVQASVLAMFTELQRRYKFACLFISHDLAVVDLLAHRVVVLQNGKVVEQGDRESVLQNPQEEYTQRLLAAAPVPDPVEQRRRREERHALLESFGEEVAELHIDDSTIGSGPLDESTRE
>NZ_CP040899.1|WP_139072224.1|565132_566107_+|ABC-transporter-permease-subunit
MQGADPGTLQNIDPLSVEEDLEGKTDKSYSQGQLVLRRFLRHRGAMVSLAVLVLITILAYTSIGFGPFPGWWKHGYTLANPVVDGGRPTLSLWPFRIGEHPFGQDNVGKDYFALVMRGTQRSLIIAFVVGIVSTLIGTAIGAAAGYFRGWVEALLMRLTDLLIVIPLLVLAAVLGQISGGSIWILALMLGIVTWTGLARLVRGEVLSLREREFVAAAQAVGTSPWRIIVKHILPNTLGTIIVSATLSIAAAILLETSLSFLGFGVQPPDTSLGVLINTYQASFTSRPWLFWWPGIFILGIALSVNFIGDGLRDAFDPRQNRNKD
>NZ_CP040899.1|WP_139072164.1|563499_565023_+|ABC-transporter-permease-subunit
MIKFILRRLGISALVLLGGSVLMFVLTINSGDPLADLRESNDPNRDSLIAQRIANMGLDDPWYERYGTWLAGVGKCFVGSCQLGVNRAGIPVIDLLGNAASATLRLVILSTLLAIVIGIGVGILTAIRQYSGFDYIVTFFAFMMYSLPVFWAAVLLKEYGAIRFNDWIADPDMALWQIALIAVVLALIVAGSLGGDARRRLLTGAVTFGFVFAAMFYFDAVNWFRQPALGIGVVAVASLGAALLIVMLSSGLGNKNVLYAALTTVGAGVVSYFVFANQLNEPTWGVLLGLFALAIVIAIVSGALWGGYSRTMAIWVSVGTATMMSLVIVADKALSSWASYLGTVRNGRPISTIGAETPNFDGTFWQEFLDKGTQLLLPTVLLTLISVASYSRYTRSSMLEVLEQDYVRTARSKGLSERVVITKHAFRNALIPITTIVAFDFAGLIGGAVLTETVFGWKGMGELFRTGLVQVDPAPVMAFFLVTGTAAVVMNMLADIAYAFLDPRIRR
>NZ_CP040899.1|WP_139947733.1|561467_563309_+|ABC-transporter-family-substrate-binding-protein
MKIRRTAQAAAVLAAGSLVLAACTSPSDDSDTGNTGDDTATEDSTGGDTGAEGTAKADLGDIQTVEGDIFYSTGQDEFTGYNSLTADTYSTYNNVIMDRVRPEGFFYFGTDGTIHENEEFGSVEVTSEEPLTIEYTVADDAVWSDGNAIDYADFLFEWVSQNPAWLSPDPAAPVFNHVSGVDYTQVNVPTGPQADSFDAKTFTVEYAEQYPDWRLVTGSYLLPAHVVAEQIGITEEELVQAIIDQDVETLTEAATFWNEGWLSSPGEVPSPEVAPSGGRYQFMEGGWTPGQSITLEANPNYWGTPAATDKITFRFLDASGHNQALQNGDLNIIEPQATVDTLPQLEGLGDAVEIQTGAELTWEHLDFNFNNGVFSDAEGGQALREAFAYCVPRQQIVDTLIKPVDPEAVVMNAREVFPFQDNYDEVVAESYDGRYDEVNLEEATRLIEESGIETPIDVRIGYSAPNPRRTSQVELIKSSCDQAGFNITDVGSADFFSAALPNGDYEVALFAWAGSGQIASGQNIYSSNAPQNYGGYTNETVDQAWTTLAASLDESVHLEQTKIIEKELWDTLYGIPVFAHPGVIAYTAGMENVRHTATQNGVAWNAEQWLLAE
>NZ_CP040899.1|WP_139947732.1|557759_561227_+|aldehyde-dehydrogenase-family-protein
MATVAHTDGRHGSLPHVAALVEDAVALAGEWLAATEAGQRRRERARSAQLAALVSDPAGLDLAVRFVDRVARPEDRRAAARELGRLPSGSARFLGPLDRLLLGVGALVAPLAPSVVIPLARRRLRRIIGHLVVDAHDPALAAHLARAREEGFRLNINLLGEAVLGEDEARSRAERTRALLEREDVDYVSIKVSSLVSQISTWDTRGTVERVLARLRPIYRTAAARTPHAFVNLDMEEYRDLDLTLEVFTTLLSEPGLADLEAGIVLQAYLPDSVAALDRLLAFAAERAAAGHAGIKVRLVKGANLSMEKVDAELHGWAQAPYPTKADVDANYLRLVERVLRPENTGAVRLGVASHNLYDVAIAHLLAERRGVGAMLDVEMLQGMAPAQARAVRATVGSVLLYTPVVAREDFDVAVSYLVRRLEENAQPQNFLRALFAAEEDASGASLGDQEARFRASARDLTAVPTTRRRTADRPPAGDRFTSTTDSDPSLPEVRAWAAERVTAPVGEPASPVLGTRAEVDAVVARGRAAQPGWAGLPAAERAAVLRRAADELEARRGELVTLMAVEGGKTVEQSDPEVSEAVDFARYYADRAIELAPGASLHTDGARFTPHVLTLVTPPWNFPVAIPAGGVLAALAAGGAVVVKPAPAVPGCTEAVVRALRAAGVPGDVLQVVRTDEGETGRALVAHDGVDAVVLTGAAETAALFSSWRAGRPGGPRVLAETSGKNTLVITPAADYDLAVADLVVSAFGHAGQKCSAASLVVLVGSAGRSRRLLRQLVDAVRSVRVGWPEDLGVTMGPVITPPEGKLRRALTELDPGERWLVEPRPLDDSGRLWSPGLKDGVAPGSFFHLTECFGPVLGIMRADTLDEALALQNATAYGLTGGLHSLDEREIDRWLDRVDVGNAYVNRHITGAIVQRQPFGGWKGSVVGPGAKAGGPNYVAQLGTWAADGLPAHTAQPGPAVLSALADYAGLLGPRERAWLARAAGSDAAALAAELGAPRDLTGPRAESDVLRYRPAPLTVRTVPGARHVDLLRVVVAAQAAGVPVDVSLDPVTSASLTALRGPDAHPGLRRLSRHVTRAESDADFLRHVHDTARVRVVGEGPAADALVTELWPQVCVIGGPVLATGRRELLGVLREQAVSRTLHRFGHLPSRA
>NZ_CP040899.1|WP_139947730.1|556922_557657_+|DUF1345-domain-containing-protein
MAHRTLDLPRRTRWLADDLTRGWLVAPVLVVAALLLTLLPVLDVPEGDRALALVLVLYSLLLLVYPALTLLAFGGLSGPALVHALGEARRRQLARPRWQRWLLGWRDNGVGGDGPSWPVGLALGSLVVAVWLIVSDAMRGSGMLVVTSIVMIILAWAGSLVAYAVHVARLDTVAGGLSFPGEEAERHFSDYLYLALGVQAAFGPADVQATTARMRRTLSGHMLVGWTFNTVVLAALVSFLVGLG
>NZ_CP040899.1|WP_139947728.1|556267_556876_+|thymidine-kinase
MRGDGPGRLQVVCGPMFAGKSEELLRRVRRARLAGLAVEVVNHAWDERHGAGQVASHAGLSIPSHSVTDVHSLADLGRETDLLAVDEAQFFGPDLVPVVEEIVLTGTTVVVAGLCVTFDGRPFEPLPSLMAVADDVVKLTAVCAVCGRDAPFHVRTLLGQVADATVPATEHVGGTESYEARCRLHLRSAGAGAALGRARPTP
>NZ_CP040899.1|WP_139947743.1|575764_576826_+|hypothetical-protein
MGLVLDPPELPPIVVTSGLDAKAVRAMVRAGGFDRVRRGALTPRAEGGWQAQEREALARIAAVSRKLTNGAVVSHSSAALLHGLWLYRVPTVVHVTQRARANGHGAPDLRRHRGPFGDSSVTVVHGIRVSTIERTVVECARTMHPRDALVVADSALRALVRPDRVDREPVADHVAELRTRLTEMVGHGRGHGRRRARAVIAAADPFAESPMESVVRWVAVSRGLPTPTVQLEVRTRGGTFYADLGWEWTEQRPDGSRVVVLRVLVEYDGELKYLPELGLVRSHAEASAALVAEKRREDLVREDGVTRVLRVTRADLRDPDALAARLVAALPASVRRTLDPVPELVVPPRTRLV
>NZ_CP040899.1|WP_139947744.1|577230_579138_+|translational-GTPase-TypA
MPVRTDLRNVAIVAHVDHGKTTMVDAMLWMSGAFGDHQHVDERAMDSGDLEREKGITILAKNTTVHYTGPAAAAQGAPDGVTINVIDTPGHADFGGEVERGLSMVDGVVLLVDASEGPLPQTRFVLRKALAAKLPVIVVVNKVDRPDARIAAVVAETTDLLLGLAGDLADEVPDLDLDAVLDVPVVYASAKARRASLEQPADGALPDNRDLEPLFETILATIPAPTYEADAPLQAHVTNLDASPFLGRLALLRIHNGELRKGQSVGWARRDGTVKPVRISELLRTVALDRVPTEVAHAGDIVAVAGIEEITIGESLVDLEDPRPLPLITVDDPAISMTIGINTSPLAGKVKGAKVTARQVKDRLDRELIGNVSLKILPTERPDAWEVQGRGELALAILVEQMRREGFELTVGKPQVVTKTIDGRTHEPMERMTIDVPEEFLGAVTQLLAQRKGRMETMSNHGTGWVRMEFVVPARGLIGFRTKFLTETRGTGIASSIAEGYEPWHGPIELRTNGSMVADRAGAVTPYAMINLQERGSFIVEPTSLVYEGQIVGESARGDDMDVNITKEKKLTNMRAAASDSFENLVPPRRLTLEESLEFANNDECVEVTPDAVRIRKVILDQTERAKAAARLRRA
>NZ_CP040899.1|WP_168202630.1|579149_580709_+|hypothetical-protein
MTSQQQPEQQRLLGVFAHPDDETIGAGGLLALAVAAGVDVSVVTCTRGERGDVVPPDLAHLRTDRDALAREREGELSSALAELGVHRHLYLDQVPALEGRRPARFRDSGMRWLRPGLAGPAEDAGSEAFTAVDLDVAALLLAVVIRHVRPTVVLTEEPGGGYGHPDHVRAHEVTTRAVELAGLEDPEVLPGLAPWRVPTVLWVAQEQDHVRAATAELRDTLAGHAPLHSPEGAVLTVPDAVEELPSIAVPATQVTASFDVRPVAERLVAALRRHRTQAQAVAPVDGQRLVGYFALSNDVLAPLLDRVYVRTAPGDDATGLLAAISAVTPAVRGGATGAAADDAPGATVHRLPPPTAGFTPEQAATLVRSTGSSSTAHVGRPGVDRGDDERPERPRASRLAPSGGATGAVVAVLAGIVMATLGTVVHRYAVEGWPVGVVLGLAGVLSAAIAARAIAGSGGLLLTVLAVVLMTQAMAFLRPGGDVLVTNETVSYVWLFGAPLVSLAAAFLPRRWFSDGRLR
>NZ_CP040899.1|WP_139072223.1|580741_581203_+|flavin-reductase
MQRLAAGVTVVTLRQGATDLAMTATALTSVSLHPPMVLFCVHTDARIREALDAVDTWGVSILDGEAGVAAERLASPGRPALGQLVGIDHHRGPLTGAALLEDAQGWLECRTQWVRNAGDHDVVVGQVLDATLGRTATGALVHHLGRLRPLGRH
>NZ_CP040899.1|WP_168202631.1|581237_582989_+|vanomycin-resistance-protein-VanB
MRSDTSTDQSLLVDFADEEPRRRRRGWIIALVALLVLVGGYVAASWYLGDRVPRGATVAGVDIGGLTAEEATARLTETLATATTEPVPVALGEAETTLEPTGLELDVEATVGQVTGLTFDPRVVVAHLLGMSEVRPVVDVDEDALRAEVERVAETLDRAPVDGAIALSDGEAQVTEPEAGLSVDVPAAVELVRDEWLTGERPLELPGTEVPPAVGAEAVETAMADIARPLTRAPVAVDIEGRLLELTPADLTSVASLEPSDGQLELVIDSRALADLVLERDPEVRTAARDAQIVIRDGAPTIVPGATGMDVDEEVLAESVAAAAVSSTDRTAVAVLREVEPEFTVADAEALGVTEVVSEFATPFHNDAQRTRNLVVGAEKISNTLIKPGETFSLIEALGPITSEAGFVSSGVVVDGLETSGMGGGLSQVSTTVFNAAFFAGMELDEWQTHSHHYARYPEGREATVYTPSVDLKWTNTTPYGALVQAWVAGGEFHVRLWGTKYFDVTTSTSERFNFTQPSTVYNSSPSCVANSSPEPGFTVTVTRVVSHDGTEVDRESWTTRYIPWDRVVCGSPPSADSPPSDA
>NZ_CP040899.1|WP_139072154.1|583363_583681_+|4Fe-4S-binding-protein
MTYVIAQPCVDVKDLACVDECPVDCIYEGKRMLYIHPDECVDCGACEPVCPVEAIYYEDDVPEQWSGYYDANVNFFDGIGSPGGAAKMGQIDKDHPLVAALPPQA
>NZ_CP040899.1|WP_139072153.1|583683_584823_+|succinyldiaminopimelate-transaminase
MGLFGDALPSFPWDSLAGARRRAEAHPGGIVDLSVGTPVDPTPRVVQDALVAAADSPGYPTTQGTDRLRQAVVDWFARRRGVPGLTPEQVLPTIGSKELVALLPALLGLGEGDVVVHPEIAYPTYDVGARLAGAEPFPADATTAVGPGRVRLLWLNSPSNPTGKVLGVEHLRKVVEWARARGVVVASDECYAELGWAEPWASEGVPSLLDPRVCGDSHEGLLVLYSASKQSNLAGYRAAFAAGDPAIVRRLLEVRKHVGMMMPAPVQAALAAALDDDEHVAVQRERYRARRETLLAACTAAGLAVAPESEAGLYLWATLPGQDADCRAVVAALAERGILVAPGEFYGPAGARHVRIALTASDERIAAAAERLAAAPLTV
>NZ_CP040899.1|WP_139072152.1|584986_586282_+|citrate-synthase
MSEATLTPAQFDVDGKRVEFERVPAREGNDGVKIASLLKETGLVTLDPGFMNTASTESAITYIDGDEGILRYRGYPIDQLAKNSSFLETAYLLIYGELPDEETLDAVTRRIKRHTILHEDFKEFFTAFPRNGHPMAVLQAGISALATYYQHTLDPKDPHQLETATVLLMAKVPTMIAYIAKRATGLPLLYPDASKSYVEDFLRMTFALPYQEDVDPALVKALDMLLILHADHEQNCSTSTVRMVGSSHANIYASIAAGVGALSGPLHGGANEAVLDMLGKIQAEGGGVDDFMRRVKDKEDGVRLMGFGHRVYKHYDPRAAIVKEAAHEVLGKLGKSDELLEIAMGLEEIALNDDYFVERKLYPNVDFYTGLIYKAMGFPTQMFTPLFALGRLPGWIAQYREMITDPATKIGRPRQVYIGETERQYTDISER
>NZ_CP040899.1|WP_139947748.1|586466_587318_-|hypothetical-protein
MRRRLVRGTLTVVTLVVVAVAAVAALLTWAVPDQVSETCVVALEDGTRHALDADQADNAALITAVTVRRGLPARAATIALATAVQESKLRNIDYGDRDSLGLFQQRPSQGWGTPEQVMDPLYSTNAFLDGLVTVPGYTELPVTEAAQEVQRSAFPDAYADHEPEGRAFASALTGNSTAALTCRLPMPEEPGDVAAAVTERLARDFGIEAQTDGTGVVVDPTHLGEDGERLAWALAHWAVATATSTGATTVEVAGHVWDRAAGNDAAWERTGMPATTPAVVRIS
>NZ_CP040899.1|WP_139072150.1|587310_588258_-|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MTLAYGTGLATVTDDGTVLDVWYPRPALRGEEGTATPAETALPVAERRDEARGVTTKVITAEIDLAEPPRSTVDAYLRLHLLSHRVVRPNTLNLDGIFGVLPNVVWTSAGPCAVEGFDATRVRLRARDGHLTVHGVDKFPRMTDYVLPEGVRIADASRVRLGAYLAPGTTVMHEGFVNFNAGTLGRSMVEGRISQGVVVGDGTDVGGGASIMGTLSGGGQERITIGERCLLGANSGLGISLGDDCVVEAGLYVTAGTKVTVLPAPGSGASSPTIVAARELSGRDQLLLRRHSVTGAVEAVARTGTGVTLNDALHA

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Crispr_ID: NZ_CP040899_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040899_3

629114-629189

Orphan

Consensus_repeat	Method
CAGCCGACTTCCGCACGACAGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040899_3

>merge|NZ_CP040899|3|629114-629189|CRISPRCasFinder
CAGCCGACTTCCGCACGACAGCCGAGTTCCGTACGACGCCGACGTCGCGCGTCATCCGACTTCCGCACGACAGCCG

>NZ_CP040899|3|3|629114-629189|CRISPRCasFinder
CAGCCGACTTCCGCACGACAGCCG	AGTTCCGTACGACGCCGACGTCGCGCGT
CATCCGACTTCCGCACGACAGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040899.1\|WP_139070947.1\|629287_629881_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|100048
NZ_CP040899.1\|WP_139070948.1\|629877_630981_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|99740
NZ_CP040899.1\|WP_139947768.1\|624887_625301_+\|CoA-binding-protein	unknown	unknown	gnl\|CDD\|224745
NZ_CP040899.1\|WP_139070945.1\|626660_627854_-\|LytR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367673
NZ_CP040899.1\|WP_139947772.1\|632077_632947_-\|Fpg/Nei-family-DNA-glycosylase	unknown	unknown	gnl\|CDD\|223344
NZ_CP040899.1\|WP_139073831.1\|618865_619846_+\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|224012
NZ_CP040899.1\|WP_139070946.1\|628339_629044_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133022
NZ_CP040899.1\|WP_139070950.1\|633042_634032_-\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224013
NZ_CP040899.1\|WP_139073829.1\|616538_617138_-\|GtrA-family-protein	unknown	unknown	gnl\|CDD\|377229
NZ_CP040899.1\|WP_139070967.1\|637555_638371_+\|dTDP-4-dehydrorhamnose-reductase	unknown	unknown	gnl\|CDD\|367904
NZ_CP040899.1\|WP_139070966.1\|630980_631967_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP040899.1\|WP_139947766.1\|620302_624658_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|378342
NZ_CP040899.1\|WP_139947776.1\|635519_637457_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|128941
NZ_CP040899.1\|WP_139947774.1\|634076_635405_-\|nucleotide-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|223936
NZ_CP040899.1\|WP_139949234.1\|617100_618270_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NZ_CP040899.1\|WP_139073830.1\|618296_618818_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|376377
NZ_CP040899.1\|WP_139947770.1\|625315_626539_-\|LytR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224235
NZ_CP040899.1\|WP_139070965.1\|627946_628306_-\|DUF2304-family-protein	unknown	unknown	gnl\|CDD\|378376
NZ_CP040899.1\|WP_139070954.1\|639754_640954_+\|mannose-6-phosphate-isomerase,-class-I	unknown	unknown	gnl\|CDD\|185085
NZ_CP040899.1\|WP_168202634.1\|638503_639658_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131955

Protein	Function_ID	Function_description	E-value
NZ_CP040899.1\|WP_139070947.1\|629287_629881_+\|N-acetyltransferase	gnl\|CDD\|100048	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.	4.39865e-49
NZ_CP040899.1\|WP_139070948.1\|629877_630981_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|99740	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD.	2.93434e-150
NZ_CP040899.1\|WP_139947768.1\|624887_625301_+\|CoA-binding-protein	gnl\|CDD\|224745	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only].	1.02816e-39
NZ_CP040899.1\|WP_139070945.1\|626660_627854_-\|LytR-family-transcriptional-regulator	gnl\|CDD\|367673	pfam03816, LytR_cpsA_psr, Cell envelope-related transcriptional attenuator domain.	2.34966e-54
NZ_CP040899.1\|WP_139947772.1\|632077_632947_-\|Fpg/Nei-family-DNA-glycosylase	gnl\|CDD\|223344	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair].	5.78235e-54
NZ_CP040899.1\|WP_139073831.1\|618865_619846_+\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|224012	COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane].	1.40856e-134
NZ_CP040899.1\|WP_139070946.1\|628339_629044_-\|glycosyltransferase	gnl\|CDD\|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	1.32369e-44
NZ_CP040899.1\|WP_139070950.1\|633042_634032_-\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|224013	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].	0
NZ_CP040899.1\|WP_139073829.1\|616538_617138_-\|GtrA-family-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	9.50232e-24
NZ_CP040899.1\|WP_139070967.1\|637555_638371_+\|dTDP-4-dehydrorhamnose-reductase	gnl\|CDD\|367904	pfam04321, RmlD_sub_bind, RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.	3.65595e-101
NZ_CP040899.1\|WP_139070966.1\|630980_631967_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	4.17261e-41
NZ_CP040899.1\|WP_139947766.1\|620302_624658_-\|metallophosphoesterase	gnl\|CDD\|378342	pfam09992, NAGPA, Phosphodiester glycosidase. This is a family conserved from bacteria to humans. The structure of a member from Bacteroides has been crystallized and modelled onto the luminal region of the human member of the family, the transmembrane glycoprotein N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase. There is some conservation of potentially functional residues, implying that in the bacterial members this family acts in some way as a phosphodiester glycosidase. The human protein is also present, so the eukaryotic members are likely to be catalyzing the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides.	3.11224e-28
NZ_CP040899.1\|WP_139947776.1\|635519_637457_+\|hypothetical-protein	gnl\|CDD\|128941	smart00701, PGRP, Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. The bacteriophage molecule, but not its moth homologue, has been shown to have N-acetylmuramoyl-L-alanine amidase activity. One member of this family, Tag7, is a cytokine.	5.03197e-34
NZ_CP040899.1\|WP_139947774.1\|634076_635405_-\|nucleotide-sugar-dehydrogenase	gnl\|CDD\|223936	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane].	1.1177e-163
NZ_CP040899.1\|WP_139949234.1\|617100_618270_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	1.66994e-153
NZ_CP040899.1\|WP_139073830.1\|618296_618818_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|376377	pfam00731, AIRC, AIR carboxylase. Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.	7.73459e-84
NZ_CP040899.1\|WP_139947770.1\|625315_626539_-\|LytR-family-transcriptional-regulator	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	7.38313e-56
NZ_CP040899.1\|WP_139070965.1\|627946_628306_-\|DUF2304-family-protein	gnl\|CDD\|378376	pfam10066, DUF2304, Uncharacterized conserved protein (DUF2304). Members of this family of hypothetical archaeal proteins have no known function.	3.66913e-21
NZ_CP040899.1\|WP_139070954.1\|639754_640954_+\|mannose-6-phosphate-isomerase,-class-I	gnl\|CDD\|185085	PRK15131, PRK15131, mannose-6-phosphate isomerase; Provisional.	3.30015e-102
NZ_CP040899.1\|WP_168202634.1\|638503_639658_+\|hypothetical-protein	gnl\|CDD\|131955	TIGR02909, conserved_hypothetical_protein, uncharacterized protein, YkwD family. Members of this protein family represent a subset of those belonging to pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.	5.61798e-19

>NZ_CP040899.1|WP_139070946.1|628339_629044_-|glycosyltransferase
MRSTPVPPTGERTVTDTWLVVPLFEEQSVIGDVVRRARETFPNIVCVDDGSTDESAARAREAGAVVVRHPVNLGQGAALQTGIEWVLTCTDAPYLVTFDADGQHQVSDAVDMVRKAREEDLAVVFGSRFLDDRTRPGLLKRVVLKTAVWVTNRSTGLRLTDAHNGLRVIRRDAAEHVDLRQDRMAHASEIVAQLGRTGLPWAEHPVHVLYTDYSRAKGQSLLNSVNILVDLLFR
>NZ_CP040899.1|WP_139070965.1|627946_628306_-|DUF2304-family-protein
MVIQVLLLVAVSVVAVLLTRGTANARHQAIRRILLVGFVVVAAASVMFPDWLTWLARQVGVGRGADLLLYALVIAFLSYIATSYRRMSELERRITVLTRELALTRTRLEDVEEPAEHAE
>NZ_CP040899.1|WP_139070945.1|626660_627854_-|LytR-family-transcriptional-regulator
MSASTPRHASSQRRRTSRLARGGGVAALSLVLFAGSGVAIAYNDIQGNIDRHDIEDLLGDRPTTAGEEEPLPIDSAAGEDLNIVVLGSDTRAGETNASFGSTPEGGQRSDTTMIAHISADRTRMEVISIPRDTLVSIPSCRLEDGSWTEPRSEAMFNTAFSTGADNGGIGTAAACTIRTIEELTGIYIDDFVVVDFAGFINVVDALGGVPMCLEEPIDDPKAHAQIPAGEQVLDGRQALGFARARYSIGDGSDISRIGRQQELVAAIAREALGKNLLTDMPALYRFLDAATSTLTTGTQLGSIPTLAGLAYSLRGIDLDSIVFETMPFEYAGNRVRPTAEAEELWAALREDRPIQGALTAGGEIPTEEATGVPTDAPTTEQPPAAPEPEPTPTSLCS
>NZ_CP040899.1|WP_139947770.1|625315_626539_-|LytR-family-transcriptional-regulator
MPPSFAPGASRPRPDARGARPVGPPADATRAMPTTRPAAPERRSVHAQQGTAQPAPAQRPAGQRPAGQPAPAYAPRQAPVAVREAPPEQPVAPPPVRRKRRGRRVVATALVLLLVLTIAWPVGLLIWANGKINHVDALSGAPDTPGTTYLLAGSDSRGSGVVDDGTEGQRSDTIMVLHKPESGPAALISLPRDTFTEIPGYGANKLNAAFSLGGPPLLVQTVEGLTGLTVDHYVEIGMGGVRDVVDSVGGVELCLDMDVDDPMSGLVWQAGCHPADGETALAFARMRYSDPTGDIGRTDRQRQIVAAIVSEVSSPGTLLDPRAQVGLAGSALDSIAVDEDTNILDIARMALAFRAATGADGLVGPPPIADLNYQPGGVGSTVLLDPQRAPLFFERLRDGELTAADFQ
>NZ_CP040899.1|WP_139947768.1|624887_625301_+|CoA-binding-protein
MSHRNDPAVIERLLTTPGRWAIVGLSENRERIAYGVAGHVQRLGMEIVPVHPRAETVHGARGYTRLADVPGPIDVVEIFVNSSLAGGVVDEAIAAGAKAVWLQLGVVDEAAAARAAAAGLDVVMDTCPVIEAPLIHA
>NZ_CP040899.1|WP_139947766.1|620302_624658_-|metallophosphoesterase
MSHLRSAPRPARLAASATVAALLAAGFVAATPHESHAATQPVVVAGMELDAGGAAIVTDVDHTVLAPGLDHVTFERLDADGWLQVNVLKAELSDSTVRADYIGPERVAQGATVSEMAERAGAVAAVNGDFFDINNSWAPAGAAVSSRDGILKSPNPGRGQSVAFDESGLGRITRLLLEGTVELPDATLPLSGVNLFAMPAGGLTVYTSHWGEYTRTRAVPAGETGVEVLLDAEGRVTSVGAPGEGQLPEGTQALVARPGAAADALAALEPGTQVTVAYALDQEDVRVAVGGQPEGEPPVLADGVVGSADGEYNTTRHPRTAIGFSEDGATAYFVVVDGRQATSRGLSLRELGELMLDLGAHDALNVDGGGSSQMNAREPGAAGTTVRNSPSDGYEREDANGLGLFLSVPGSGALTAFRVEPLSGDEDAHRVFPGLHRTLTAHGMDETFSPVAGAPSAWASDSAAATVSEGVVVGAEPGSAVVTASTGEATGTLDVEVLGPLARLTASQNVLNLEAEGSSATITLTGHDAEGFTAPVEARDVTVTNPDPQTFTVTPTPEGAFEVTATGAEGSAVLTLAVGEVSVELVVAVPLELRVIDDLSAAERWTSAHDRAPGGTVVPAEGHDGGDGLRMTYDFTQSTGTRGQYAVAPGGAIEIPGRPQKLSVWVDGDGNGALLRLQVRQANGVVGWIDGPGGSQSLHITWEGWQRVDFVVPSSFETPLTLERIRVLETVAAKQYTGEVGFSDIYAYLPPDGVPAPKEQRVTDPLVVPTGETDDDDLRVAVMSDAQFVARNPESGAVEGARDAFREIVAEDPDLLVINGDLVDEAAPEDFDLARTIIEEELGDAPFDWYYVPGNHEVMGGPIANFVEEFGATSHAIDLGATRVVTLSSATGRLAADFAQVQMLREQLDAAAADDSVTGVLVFAHHPTNDPLPTKNSQLTDRHEAAMIDSWLAQWRAETGKSVAYVGAHVGVFDTTRVDGVPYVINGNAGKSPSSTPADGGFTGWTMLGVDPEAGRWAESEDEWLAVEVQTRVDELTVTAPQEALGAGEQVVLEAEVTQDDTRTFGLAWPMSWAWSGSQGVHVGAVADAPADAVVALDPATGTVTGLRAGTVEVTLAVNDATTTVPVAVTGGVVAVTGRPVVGSELRADMSGWDLSDSAEVTFQWLRDGAPIAGATSGRYTPVAADAAAMLAVRATVSAPGLATVSGTSEPVGPVAPAPGSPTPVGDKGFHLSNTWRGTTDVYFAYGRSTDEVLIGDWDGDGRDTITVRRGTAFHVSNAQRGGAAETVLHYGRPGDVVLVGDWDGDGRDTFAVRRGAEYHVKNSLSGGPADTVVVYGRAGDEVLVGDWDGDGRDTFAVRRGQVYHVKDSLRPGPADVVLAYGRAGDVVLSGDWDGDGRDTLAVRRGATYYVSNSLRSGEAERVVTFGRPGDEVLVGDWDGDTTDTLGIRRT
>NZ_CP040899.1|WP_139073831.1|618865_619846_+|UDP-glucose-4-epimerase-GalE
MSIMVTGGAGYIGAHVVRLLQERGEDVVVVDDLSTGREDRVGDATLVELDVAGGDAQQLLEQVMREREVTGVVHFAARKQVGESVARPAWYFQQNVTGLANVVAAMEAVGADRLIFSSSAAVYGMPDVEIVTEDTDPRPINPYGETKLVGEWLIADAGRAWGLRAASLRYFNVAGAGWPDLGDPAVLNLVPMVLDRLAKGERPKVFGEDYPTTDGTCIRDYIHVLDLAHAHLAALDHLAGGDGGNLVLNVGTGQGASVKEVITEIGRVSGLDVTPDVEERRAGDPPRLVASADRIAEVLGWQTRNGLPEIIESAWEAWQAGPRRIG
>NZ_CP040899.1|WP_139073830.1|618296_618818_+|5-(carboxyamino)imidazole-ribonucleotide-mutase
MDVGIVMGSDSDWPVMEQAADALEELGVGYEVGVVSAHRMPEQMLAYGREAAGRGLRVIIAGAGGAAHLPGMLAAVTPLPVVGVPVPLRHLDGMDSLLSIVQMPAGVPVATVSVGGARNAGLLAARILAAGTSEADLELRRRMVDFQENLRRVAEEKGARLAAARRHTTGFSA
>NZ_CP040899.1|WP_139949234.1|617100_618270_+|5-(carboxyamino)imidazole-ribonucleotide-synthase
MVAVVGGGQLARMMQQAAIGLDVRLRVLVEAPDGATGQVVPDAPVGRADDPDAVRGILPGAEVLTFEHEHVPGTLLDELEAEGVAVRPGARALRHAQDKIVMRTALGGLGVPCPRWAPVRTRDELAAFGDATGWPVVVKTARGGYDGKGVRVVASADDAGDWLDALTGEDALLAEEHVPFTRELAVLVARRPSGEVRAWPVAQTIQRDGVCAEVLAPAPDLPAELAAHAVDVATRIAEGLDVTGVLAVEMFEFPGDDGAPCIAVNELAMRPHNSGHWTIDGAVTSQFEQHLRAVLDLPLGPTDARAAVSVMVNLLGSELPDPARALDAVFARCPRARVELYGKEVRPGRKLGHVTVYGDDLEDVRREARAAVALLGGRPGEQAQDPVGA
>NZ_CP040899.1|WP_139073829.1|616538_617138_-|GtrA-family-protein
MRASCPPPTTATTAPTVREPTARYAGEVTSSHATGPATQEDQAAGEAVPAAGGRWRRWREQAAELARFGAVGGVAFVVDVGLMNLLRFGPGEILGHKPLTAKVVSVVVATLVAWLGNRYWAFAGSRREQRGRELVWFLLVNAGGMLIAVGALGISHYVLGFTSPLADNIAANGVGLVLGTAFRYFCYRYLVFTGKPVAP
>NZ_CP040899.1|WP_139070947.1|629287_629881_+|N-acetyltransferase
MTVRITDSADVAPDARLGDGTSVWHLAQVREGAVLGEGCVVGRGAYIGTGVRLGNNCKVQNYALVYEPAELADGVFVGPAAVLTNDTHPRAINPDGSLKSADDWEAVGVTVGTGAAIGARAVCVAPVTIGAWATVAAGAVVTRDVPAHALVAGVPARQIGWVGHAGRRLEPEGDLLRCPATGRTYAIHDNELREVTA
>NZ_CP040899.1|WP_139070948.1|629877_630981_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MNQSLIPAAKPIIGDEERAAVDAVLRSGMVAQGPQVAAFEEEFAEQLVEGRRCQAVSSGTAGLHVGLLASGVGPGDEVIVPSFTFAATANSVALTGATPVFADIDPDTFCLDPESVRAAVTERTRGVMPVHLYGHPADMVAFEALAAELGLEIYEDAAQAHGASLHGRKVGTWGRFAMFSLYPTKNMTSGEGGMVSCADEAVARMVRLLRNQGMERQYANEVIGLNVRMTDIHAAIGRVQLGKLPAWTARRQANAAFFDEHLTGVVTPPVADGAVHVYHQYTIRVEASERDRMVTALREEHGVGTGVYYPIPNHRLSSLEQYAPAHELPQTEKAAGEVISLPVHPSLSQEDLERVVSGVNAVAKAGA
>NZ_CP040899.1|WP_139070966.1|630980_631967_+|Gfo/Idh/MocA-family-oxidoreductase
MPIRMGLIGLGAMGRHHARVIRQTSGMELVAVADPGGDAYGVAGDLEVLPDVHALIAAGIDAAMVAVPTVHHEEVGLALAAAGVHTMIEKPIAHTVEAGERVATAFEEAGLVGAVGYVERCNSAVLELRKRLAAGELGQVYQIQTRRQGPFPARISDVGVVKDLATHDVDLTAFIAGSPYDQVAAQVTHRSGREHEDMVLAIGRLASGVIVNHVVNWLSPMKERTTVVTGERGAFVADTMTGDLTFYANGTVPTTWDRVAQFRGVTEGDVVRYALPKREPLAVEQENFRDAVAGTGTDIVTMREGVHTLTVIEAMLASAHDGGRTIAL
>NZ_CP040899.1|WP_139947772.1|632077_632947_-|Fpg/Nei-family-DNA-glycosylase
MPELPEVQALAQVLATRATGQVVRAVHVTSFPALKTYDPPPTALVGAAVTGVGRHGKWLDVVTSGPDGEVHLVLHLARAGWLRWHDTPPEGMPRAGRSGLAARVVLDGGAFDLTEAGTKKSLAIHVVRDPREVERIATLGVEPLSPDFTRQALDGLLDARNQQVKGLLRDQGAIAGIGNAYSDEILHAARLSPFALTRTLDEEARERLFTAVTAVLTAAIEASVGKDARDLKDVKRSGMAVHGRTGQACPVCGDTVAEVSFADSSLQYCPTCQTGGKKLADRRMSKLLR
>NZ_CP040899.1|WP_139070950.1|633042_634032_-|dTDP-glucose-4,6-dehydratase
MHVLVTGGAGFIGANFVHQTVAERPDARVTVLDKFTYAANRESLAGLDIEIVEGDVADRDVVDPLVEAADVVVHFAAESHNDNSLNDPWPFVQTNLIGTYTVLEAVRRHGTRLHHISTDEVYGDLELDDPAKFTASTPYNPSSPYSSTKAGSDMLVRAWVRSFGVEATLSNCSNNYGPYQHIEKFIPRQITNVLDGRRPKLYGAGLNVRDWIHVADHNSAVWRIIDAGQLGRTYLIGADGEMNNKAVVELILELLGRDPQDYDHVADRPGHDLRYAIDATPLREELGWEPRFRDFRAGLADTIEWYRANEAWWRPQKDAVEAKYAKTGQ
>NZ_CP040899.1|WP_139947774.1|634076_635405_-|nucleotide-sugar-dehydrogenase
MQISVIGCGYLGAVHAASMAELGHDVVGIDVDETKVALLAQGKAPFHEPGFADILERNVAAGRLRFSTDMTEVAGAAVHFIGVGTPQQEGSYAADMSQVNGSVAALLPHLAPTEAGAPVVVGKSTVPVGTAAGIAAQVEAAGGVLVWNPEFLREGFAVQDTISPDRMVYGLPADQQAAAHGQALLDEVYDDLINRQQIPRLLTDYPTAELVKVAANSFLATKISFINAMAELCEATGADVTQLAQAIGHDDRIGSKFLRAGVGFGGGCLPKDIRAFMARAEELGVDEALGFLREVDSINDRRRDHVITLATDLLGGQLDGANVAVLGAAFKPDTDDMRNSPALDIAHRLATAGARVTVTDPQAGPVLAGQDHHDFTVAPTAHEAMTGADLVLLLTEWREFSELDPAATVSLPNRAAIIDGRNVLDPAQWRAAGWTYHGMGRP
>NZ_CP040899.1|WP_139947776.1|635519_637457_+|hypothetical-protein
MTSRGARLVVAGTAAGALIVGAVAPAALAAPGGGPAPGDAARDVAVLQLTDDDGRPTDLARTVADLRAGSSVLTPELEAPEFYVAGVTWAGGQEPDERISIRVRSGEGWTSWTELDTEVVDGEDVGGSEPYVVGGATGVQLRLDGGDGTLPQDLRVHLIPPEPTDEEVVADSAPAAAELTRRVASSATATATASGPASAAQTEAAAPTFGVLAATAGAPSVVPRSGWGAGYSTPAWTPDFYELRAAVVHHTAGSNDYTAAQSAGIVRGIYHYHSTSRGWGDIGYNFLVDKYGQVFEGRNGTLAAPYGLMAEGGHARGFNDGTLGISVIGDYTRVRAPDLVMTRMAEVIAWKFADAGIEVRTASGYRSPGTYARPAGQQLPRVFAHRDVDATTCPGDDIYARIPALLDDVARRVSALGGRPSTVHLRNVATGGGADLSYPRGRSADTLLVGDWDGDGVDTVAVRRGSRYEFYDDHGSTPSSVVVYGRAGDDVLVGDWNGDGKDTLAVRRGREYHVKNSLSGGPADQVIVYGRERDRVLVGDWNGDGKDTFAVRRYSVYHVKNSMSGGEADHVFRYGRDSDLVLVGDWDGDGKDTITVRRGRSYYVNNRLAGGEANSVFEFGRPADASLVGDWDGDGVDGIGVRRLG
>NZ_CP040899.1|WP_139070967.1|637555_638371_+|dTDP-4-dehydrorhamnose-reductase
MLGTDVCDLLRSRGAHVVAADREELDVTDPAQVAEQVRDVDVVVNCAAWTAVDDAEEKEAAAFALNAVAPQLLARAARLAGARMVQISTDYVFAGDATRPYAESAAIAPRSAYGRTKAAGEWAVRAECPDHLIVRTAWLYGAHGKCFPKTMARLAAERDALTVVADEVGQPTWTADLADLLVRLVEADAPSGTYHGTSSGETSWFGFTEEIVRTLGKDPAMVSPTTAADFKRPAPRPSYSVLGHEALLLAGVEPIGHWAERWTVAAPEVLA
>NZ_CP040899.1|WP_168202634.1|638503_639658_+|hypothetical-protein
MTALTLLGAPANAKGGEVGGSGSVYHLTDGWSSRTDETVAYGRAGDRVYVGDWDGDGEDTLAVRRGATYYFANTLSGGSADRVVTYGRPGDTVLMGDWDGDGVDTPAVRRGNVYHVKNSLGGGGADRVVVYGNPGDEVLVGDWDGDGRDTLGVRRGNVYHLKNSLSGGRADHTVPYGRAGDDVLVGDWNGDGRDTLGVRRGSAYYLKNRIAGGGADRVLAFGRDDDAVLVGDWNGDGAATLGIRRAAQSAGQGGLTSFDAEMVDLVNAERRRAGVAPAQAWPLLREGALEHSRWMARTGSFEHATGTTISSDGRAAGCDASAENIFWGTSGFATDPAAVLREYMNSPGHRANILAPENRFIAIGSVQADNGRIYNTQRFARSCS
>NZ_CP040899.1|WP_139070954.1|639754_640954_+|mannose-6-phosphate-isomerase,-class-I
MRRVFGVPRAYAWGSASAIHDLVGSEPDGTPLAELWFGAHPSAPARTAEDGSDLRSLITEDPEGTLGYDVLARFGPQLPYLLKLIAPQRPLSLQVHPDLRRAQERFAAENAAGVALDSPVRNYRDPNHKPELVFALTTFEALCGFRAPRRAAELLAGLDAPVARSLHTALRADPTPSGMRTAFTALLHESTRPGPEEVEQVVAACRERAAQGSPSPRADGIVCRLAEEYPHDPGVVASLLLNPVTLQPGDSLFVPAGGVHAYLSGLGVEVMASSDNVLRAGLTSKHVDVAEVLDCVDYVAAPPIRIAPEVFHGATRVFYAPVDDFELSVTTLAEGDCADGPRPLPGRGPRVLLCLEGSLAVSGETRGLTLDRGHAAFVRADDGPLTIAGTGTLVQADVP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040899_3	3.1\|629138\|28\|NZ_CP040899\|CRISPRCasFinder	629138-629165	28	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	690508-690535	7	0.75
NZ_CP040899_3	3.1\|629138\|28\|NZ_CP040899\|CRISPRCasFinder	629138-629165	28	NC_009468	Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequence	70347-70374	7	0.75
NZ_CP040899_3	3.1\|629138\|28\|NZ_CP040899\|CRISPRCasFinder	629138-629165	28	NZ_CP044329	Methylocystis rosea strain BRCS1 plasmid unnamed1, complete sequence	40536-40563	7	0.75
NZ_CP040899_3	3.1\|629138\|28\|NZ_CP040899\|CRISPRCasFinder	629138-629165	28	NZ_CP050813	Yokenella regensburgei strain W13 plasmid pYRW13-131, complete sequence	84060-84087	7	0.75
NZ_CP040899_3	3.1\|629138\|28\|NZ_CP040899\|CRISPRCasFinder	629138-629165	28	NZ_CP050813	Yokenella regensburgei strain W13 plasmid pYRW13-131, complete sequence	84371-84398	7	0.75
NZ_CP040899_3	3.1\|629138\|28\|NZ_CP040899\|CRISPRCasFinder	629138-629165	28	NZ_CP050813	Yokenella regensburgei strain W13 plasmid pYRW13-131, complete sequence	84993-85020	7	0.75
NZ_CP040899_3	3.1\|629138\|28\|NZ_CP040899\|CRISPRCasFinder	629138-629165	28	NZ_CP050813	Yokenella regensburgei strain W13 plasmid pYRW13-131, complete sequence	85613-85640	7	0.75
NZ_CP040899_3	3.1\|629138\|28\|NZ_CP040899\|CRISPRCasFinder	629138-629165	28	NZ_CP050813	Yokenella regensburgei strain W13 plasmid pYRW13-131, complete sequence	86233-86260	7	0.75
NZ_CP040899_3	3.1\|629138\|28\|NZ_CP040899\|CRISPRCasFinder	629138-629165	28	NZ_CP050813	Yokenella regensburgei strain W13 plasmid pYRW13-131, complete sequence	86545-86572	7	0.75

1. spacer 3.1|629138|28|NZ_CP040899|CRISPRCasFinder matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.75

agttccgtacgacgccgacgtcgcgcgt	CRISPR spacer
cggcgagtgcgacgccgacgtcgcgcgc	Protospacer
 * .  **.******************.

2. spacer 3.1|629138|28|NZ_CP040899|CRISPRCasFinder matches to NC_009468 (Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequence) position: , mismatch: 7, identity: 0.75

agttccgtacgacgccgacgtcgcgcgt	CRISPR spacer
taccccgaacgatgccgacgtcgcgcgg	Protospacer
 ...*** ****.**************

3. spacer 3.1|629138|28|NZ_CP040899|CRISPRCasFinder matches to NZ_CP044329 (Methylocystis rosea strain BRCS1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.75

agttccgtacgacgccgacgtcgcgcgt	CRISPR spacer
gcgacggttcgacgccgacgtcgcgcgc	Protospacer
.   * ** ******************.

4. spacer 3.1|629138|28|NZ_CP040899|CRISPRCasFinder matches to NZ_CP050813 (Yokenella regensburgei strain W13 plasmid pYRW13-131, complete sequence) position: , mismatch: 7, identity: 0.75

agttccgtacgacgccgacgtcgcgcgt	CRISPR spacer
gatggcgtacgacgccgacgccgcgctc	Protospacer
..*  ***************.***** .

5. spacer 3.1|629138|28|NZ_CP040899|CRISPRCasFinder matches to NZ_CP050813 (Yokenella regensburgei strain W13 plasmid pYRW13-131, complete sequence) position: , mismatch: 7, identity: 0.75

agttccgtacgacgccgacgtcgcgcgt	CRISPR spacer
gatggcgtacgacgccgacgccgcgctc	Protospacer
..*  ***************.***** .

6. spacer 3.1|629138|28|NZ_CP040899|CRISPRCasFinder matches to NZ_CP050813 (Yokenella regensburgei strain W13 plasmid pYRW13-131, complete sequence) position: , mismatch: 7, identity: 0.75

agttccgtacgacgccgacgtcgcgcgt	CRISPR spacer
gatggcgtacgacgccgacgccgcgctc	Protospacer
..*  ***************.***** .

7. spacer 3.1|629138|28|NZ_CP040899|CRISPRCasFinder matches to NZ_CP050813 (Yokenella regensburgei strain W13 plasmid pYRW13-131, complete sequence) position: , mismatch: 7, identity: 0.75

agttccgtacgacgccgacgtcgcgcgt	CRISPR spacer
gatggcgtacgacgccgacgccgcgctc	Protospacer
..*  ***************.***** .

8. spacer 3.1|629138|28|NZ_CP040899|CRISPRCasFinder matches to NZ_CP050813 (Yokenella regensburgei strain W13 plasmid pYRW13-131, complete sequence) position: , mismatch: 7, identity: 0.75

agttccgtacgacgccgacgtcgcgcgt	CRISPR spacer
gatggcgtacgacgccgacgccgcgctc	Protospacer
..*  ***************.***** .

9. spacer 3.1|629138|28|NZ_CP040899|CRISPRCasFinder matches to NZ_CP050813 (Yokenella regensburgei strain W13 plasmid pYRW13-131, complete sequence) position: , mismatch: 7, identity: 0.75

agttccgtacgacgccgacgtcgcgcgt	CRISPR spacer
gatggcgtacgacgccgacgccgcgctc	Protospacer
..*  ***************.***** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

632077 : 639658

Escherichia_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_139947772.1\|632077_632947_-	Fpg/Nei family DNA glycosylase	G3MA33	Bacillus_virus	1.6e-07	24.1
WP_139070950.1\|633042_634032_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	4.9e-66	41.3
WP_139947774.1\|634076_635405_-	nucleotide sugar dehydrogenase	A0A127AXI2	Bacillus_phage	1.5e-62	36.6
WP_139947776.1\|635519_637457_+	hypothetical protein	A0A2P1JTQ5	Streptomyces_phage	2.4e-08	31.1
WP_139070967.1\|637555_638371_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.6e-22	35.4
WP_168202634.1\|638503_639658_+	hypothetical protein	A0A0E3JT82	Bacillus_phage	1.9e-05	31.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040899

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection