CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040902	Longibaculum sp. KGMB06250 chromosome, complete genome	2 crisprs	RT,Cas14u_CAS-V,cas9,cas1,cas2,csn2,cas14k,WYL,csa3,DEDDh,cas3,csx1,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6	2	19	5	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040902_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040902_1

846903-848917

TypeII

II-A,II-B

Consensus_repeat	Method
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACAT	PILER-CR
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	CRISPRCasFinder
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	CRT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	PILER-CR
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	PILER-CR
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	PILER-CR

30 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_CP040902_1

>merge|NZ_CP040902|1|846903-848917|PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR,PILER-CR
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACATTTAAAGTTAACTATAATTGGTTGACTGAGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACAAACCTTTGCACCACGTTGTAATACAGCTTGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACATCGAGTGCGAATACGAATGTTTCTTTGATGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACTGTTACATTAAGTGGATGTACTAAAGTCATGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACATATATATCAACAATTGGACTTTATTACAAGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACAACCCTAAATCTTGATCATAATTTCCCGTAGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACCCCGCTTTTATTTATAAATAAAAGGTCTAAGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACCCCGCTTTTATTTATAAATAAAAGGTCTAAGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACGAAATCTATTTACGCTTATAACTGGTCAGTGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACTATTCTTGATTAGAAAAAGACTAGGTGTAAGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACTTCGAGTGTATATGAAAATACACACAGAAGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACTTATAATACAGCGTTCCATATTTGGATGGAGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACTCGTACGTGGTAATGATGATGAATTCTGTAGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACTTTAGTTCAAATGAACTCAGGCATGTACTTGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACAGCTATGAACGGCTTTATTGGTGCTATCTAGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACAAGAAGAAACTCAACAAAGAGACCCTCAAAGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACAGTTGTACCACAGACACCACCACAAGCCCTGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACGACAGCCCGTCATCATCTGGAATGACCGCAGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACTACAAAATCAGAAGTAACGACAGTTGAAACGTTTTAGAAGTCTGTTATTTTGAATGATTACAAAACTCGGTTTTGAAATAATCTTTCTTGAGTGTCGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACAAAAATTGTTGAATGATAGCCTGGCATTTCGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACGATAATGATAAGAAAAGCATTATACTATATGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACAGCTTTTTAGTGTAATATAGGTATCGTCAAGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACTAAACAATTACAAAACACCTTATGAATTGTGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACTATCGTAACCCCAACCCAAAAAGCGTTTCAGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACGAAAATTTAAAAATCATCTAGGGGACTGTAGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACATTAGTTGATAGTGGAAAAAAGGATGATAGGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACAAATGCGATTGCTTGGAGTGCTGCTATAAAGTTTTAGAAGTGTGTTATTTTGGATGATTACAAAACAATTCAACTATGTAATGATATATTAAAAACGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACGGAACAATGTGATCAATACAAGGTGACAGTGTTTTAGAAGTATGTTATTTTGGAATAAAAATATTC

>NZ_CP040902|1|1|846903-847072|PILER-CR
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACAT	TTAAAGTTAACTATAATTGGTTGACTGA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACAA	ACCTTTGCACCACGTTGTAATACAGCTT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACATCGAGTGCGAATACGAATGTTTCTTTGATGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TGTTACATTAAGTGGATGTACTAAAGTCAT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	ATATATATCAACAATTGGACTTTATTACAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AACCCTAAATCTTGATCATAATTTCCCGTA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	CCCGCTTTTATTTATAAATAAAAGGTCTAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACCCCGCTTTTATTTATAAATAAAAGGTCTAAGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	GAAATCTATTTACGCTTATAACTGGTCAGT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TATTCTTGATTAGAAAAAGACTAGGTGTAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TTCGAGTGTATATGAAAATACACACAGAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TTATAATACAGCGTTCCATATTTGGATGGA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TCGTACGTGGTAATGATGATGAATTCTGTA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TTTAGTTCAAATGAACTCAGGCATGTACTT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AGCTATGAACGGCTTTATTGGTGCTATCTA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AAGAAGAAACTCAACAAAGAGACCCTCAAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AGTTGTACCACAGACACCACCACAAGCCCT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	GACAGCCCGTCATCATCTGGAATGACCGCA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TACAAAATCAGAAGTAACGACAGTTGAAAC
GTTTTAGAAGTCTGTTATTTTGAATGATTACAAAAC	TCGGTTTTGAAATAATCTTTCTTGAGTGTC
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AAAAATTGTTGAATGATAGCCTGGCATTTC
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	GATAATGATAAGAAAAGCATTATACTATAT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AGCTTTTTAGTGTAATATAGGTATCGTCAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TAAACAATTACAAAACACCTTATGAATTGT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TATCGTAACCCCAACCCAAAAAGCGTTTCA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACGAAAATTTAAAAATCATCTAGGGGACTGTAGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	ATTAGTTGATAGTGGAAAAAAGGATGATAG
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AAATGCGATTGCTTGGAGTGCTGCTATAAA
GTTTTAGAAGTGTGTTATTTTGGATGATTACAAAAC	AATTCAACTATGTAATGATATATTAAAAAC


>NZ_CP040902|1|1|846903-848917|CRISPRCasFinder
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	ATTTAAAGTTAACTATAATTGGTTGACTGA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AAACCTTTGCACCACGTTGTAATACAGCTT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	ATCGAGTGCGAATACGAATGTTTCTTTGAT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TGTTACATTAAGTGGATGTACTAAAGTCAT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	ATATATATCAACAATTGGACTTTATTACAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AACCCTAAATCTTGATCATAATTTCCCGTA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	CCCGCTTTTATTTATAAATAAAAGGTCTAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	CCCGCTTTTATTTATAAATAAAAGGTCTAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	GAAATCTATTTACGCTTATAACTGGTCAGT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TATTCTTGATTAGAAAAAGACTAGGTGTAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TTCGAGTGTATATGAAAATACACACAGAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TTATAATACAGCGTTCCATATTTGGATGGA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TCGTACGTGGTAATGATGATGAATTCTGTA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TTTAGTTCAAATGAACTCAGGCATGTACTT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AGCTATGAACGGCTTTATTGGTGCTATCTA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AAGAAGAAACTCAACAAAGAGACCCTCAAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AGTTGTACCACAGACACCACCACAAGCCCT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	GACAGCCCGTCATCATCTGGAATGACCGCA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TACAAAATCAGAAGTAACGACAGTTGAAAC
GTTTTAGAAGTCTGTTATTTTGAATGATTACAAAAC	TCGGTTTTGAAATAATCTTTCTTGAGTGTC
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AAAAATTGTTGAATGATAGCCTGGCATTTC
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	GATAATGATAAGAAAAGCATTATACTATAT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AGCTTTTTAGTGTAATATAGGTATCGTCAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TAAACAATTACAAAACACCTTATGAATTGT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TATCGTAACCCCAACCCAAAAAGCGTTTCA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	GAAAATTTAAAAATCATCTAGGGGACTGTA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	ATTAGTTGATAGTGGAAAAAAGGATGATAG
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AAATGCGATTGCTTGGAGTGCTGCTATAAA
GTTTTAGAAGTGTGTTATTTTGGATGATTACAAAAC	AATTCAACTATGTAATGATATATTAAAAAC
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	GGAACAATGTGATCAATACAAGGTGACAGT
GTTTTAGAAGTATGTTATTTTGGAATAAAAATATTC

>NZ_CP040902|1|1|846903-848917|CRT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	ATTTAAAGTTAACTATAATTGGTTGACTGA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AAACCTTTGCACCACGTTGTAATACAGCTT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	ATCGAGTGCGAATACGAATGTTTCTTTGAT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TGTTACATTAAGTGGATGTACTAAAGTCAT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	ATATATATCAACAATTGGACTTTATTACAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AACCCTAAATCTTGATCATAATTTCCCGTA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	CCCGCTTTTATTTATAAATAAAAGGTCTAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	CCCGCTTTTATTTATAAATAAAAGGTCTAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	GAAATCTATTTACGCTTATAACTGGTCAGT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TATTCTTGATTAGAAAAAGACTAGGTGTAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TTCGAGTGTATATGAAAATACACACAGAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TTATAATACAGCGTTCCATATTTGGATGGA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TCGTACGTGGTAATGATGATGAATTCTGTA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TTTAGTTCAAATGAACTCAGGCATGTACTT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AGCTATGAACGGCTTTATTGGTGCTATCTA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AAGAAGAAACTCAACAAAGAGACCCTCAAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AGTTGTACCACAGACACCACCACAAGCCCT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	GACAGCCCGTCATCATCTGGAATGACCGCA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TACAAAATCAGAAGTAACGACAGTTGAAAC
GTTTTAGAAGTCTGTTATTTTGAATGATTACAAAAC	TCGGTTTTGAAATAATCTTTCTTGAGTGTC
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AAAAATTGTTGAATGATAGCCTGGCATTTC
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	GATAATGATAAGAAAAGCATTATACTATAT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AGCTTTTTAGTGTAATATAGGTATCGTCAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TAAACAATTACAAAACACCTTATGAATTGT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TATCGTAACCCCAACCCAAAAAGCGTTTCA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	GAAAATTTAAAAATCATCTAGGGGACTGTA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	ATTAGTTGATAGTGGAAAAAAGGATGATAG
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AAATGCGATTGCTTGGAGTGCTGCTATAAA
GTTTTAGAAGTGTGTTATTTTGGATGATTACAAAAC	AATTCAACTATGTAATGATATATTAAAAAC
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	GGAACAATGTGATCAATACAAGGTGACAGT
GTTTTAGAAGTATGTTATTTTGGAATAAAAATATTC

>NZ_CP040902|1|2|847101-847400|PILER-CR
	TTAAAGTTAACTATAATTGGTTGACTGA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACAA	ACCTTTGCACCACGTTGTAATACAGCTT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACATCGAGTGCGAATACGAATGTTTCTTTGATGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TGTTACATTAAGTGGATGTACTAAAGTCAT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	ATATATATCAACAATTGGACTTTATTACAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AACCCTAAATCTTGATCATAATTTCCCGTA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	CCCGCTTTTATTTATAAATAAAAGGTCTAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACCCCGCTTTTATTTATAAATAAAAGGTCTAAGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	GAAATCTATTTACGCTTATAACTGGTCAGT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TATTCTTGATTAGAAAAAGACTAGGTGTAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TTCGAGTGTATATGAAAATACACACAGAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TTATAATACAGCGTTCCATATTTGGATGGA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TCGTACGTGGTAATGATGATGAATTCTGTA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TTTAGTTCAAATGAACTCAGGCATGTACTT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AGCTATGAACGGCTTTATTGGTGCTATCTA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AAGAAGAAACTCAACAAAGAGACCCTCAAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AGTTGTACCACAGACACCACCACAAGCCCT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	GACAGCCCGTCATCATCTGGAATGACCGCA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TACAAAATCAGAAGTAACGACAGTTGAAAC
GTTTTAGAAGTCTGTTATTTTGAATGATTACAAAAC	TCGGTTTTGAAATAATCTTTCTTGAGTGTC
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AAAAATTGTTGAATGATAGCCTGGCATTTC
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	GATAATGATAAGAAAAGCATTATACTATAT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AGCTTTTTAGTGTAATATAGGTATCGTCAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TAAACAATTACAAAACACCTTATGAATTGT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TATCGTAACCCCAACCCAAAAAGCGTTTCA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACGAAAATTTAAAAATCATCTAGGGGACTGTAGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	ATTAGTTGATAGTGGAAAAAAGGATGATAG
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AAATGCGATTGCTTGGAGTGCTGCTATAAA
GTTTTAGAAGTGTGTTATTTTGGATGATTACAAAAC	AATTCAACTATGTAATGATATATTAAAAAC


>NZ_CP040902|1|3|847431-848587|PILER-CR
	TTAAAGTTAACTATAATTGGTTGACTGA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACAA	ACCTTTGCACCACGTTGTAATACAGCTT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACATCGAGTGCGAATACGAATGTTTCTTTGATGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TGTTACATTAAGTGGATGTACTAAAGTCAT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	ATATATATCAACAATTGGACTTTATTACAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AACCCTAAATCTTGATCATAATTTCCCGTA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	CCCGCTTTTATTTATAAATAAAAGGTCTAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACCCCGCTTTTATTTATAAATAAAAGGTCTAAGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	GAAATCTATTTACGCTTATAACTGGTCAGT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TATTCTTGATTAGAAAAAGACTAGGTGTAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TTCGAGTGTATATGAAAATACACACAGAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TTATAATACAGCGTTCCATATTTGGATGGA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TCGTACGTGGTAATGATGATGAATTCTGTA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TTTAGTTCAAATGAACTCAGGCATGTACTT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AGCTATGAACGGCTTTATTGGTGCTATCTA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AAGAAGAAACTCAACAAAGAGACCCTCAAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AGTTGTACCACAGACACCACCACAAGCCCT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	GACAGCCCGTCATCATCTGGAATGACCGCA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TACAAAATCAGAAGTAACGACAGTTGAAAC
GTTTTAGAAGTCTGTTATTTTGAATGATTACAAAAC	TCGGTTTTGAAATAATCTTTCTTGAGTGTC
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AAAAATTGTTGAATGATAGCCTGGCATTTC
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	GATAATGATAAGAAAAGCATTATACTATAT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AGCTTTTTAGTGTAATATAGGTATCGTCAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TAAACAATTACAAAACACCTTATGAATTGT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TATCGTAACCCCAACCCAAAAAGCGTTTCA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACGAAAATTTAAAAATCATCTAGGGGACTGTAGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	ATTAGTTGATAGTGGAAAAAAGGATGATAG
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AAATGCGATTGCTTGGAGTGCTGCTATAAA
GTTTTAGAAGTGTGTTATTTTGGATGATTACAAAAC	AATTCAACTATGTAATGATATATTAAAAAC


>NZ_CP040902|1|4|848618-848851|PILER-CR
	TTAAAGTTAACTATAATTGGTTGACTGA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACAA	ACCTTTGCACCACGTTGTAATACAGCTT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACATCGAGTGCGAATACGAATGTTTCTTTGATGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TGTTACATTAAGTGGATGTACTAAAGTCAT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	ATATATATCAACAATTGGACTTTATTACAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AACCCTAAATCTTGATCATAATTTCCCGTA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	CCCGCTTTTATTTATAAATAAAAGGTCTAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACCCCGCTTTTATTTATAAATAAAAGGTCTAAGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	GAAATCTATTTACGCTTATAACTGGTCAGT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TATTCTTGATTAGAAAAAGACTAGGTGTAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TTCGAGTGTATATGAAAATACACACAGAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TTATAATACAGCGTTCCATATTTGGATGGA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TCGTACGTGGTAATGATGATGAATTCTGTA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TTTAGTTCAAATGAACTCAGGCATGTACTT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AGCTATGAACGGCTTTATTGGTGCTATCTA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AAGAAGAAACTCAACAAAGAGACCCTCAAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AGTTGTACCACAGACACCACCACAAGCCCT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	GACAGCCCGTCATCATCTGGAATGACCGCA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TACAAAATCAGAAGTAACGACAGTTGAAAC
GTTTTAGAAGTCTGTTATTTTGAATGATTACAAAAC	TCGGTTTTGAAATAATCTTTCTTGAGTGTC
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AAAAATTGTTGAATGATAGCCTGGCATTTC
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	GATAATGATAAGAAAAGCATTATACTATAT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AGCTTTTTAGTGTAATATAGGTATCGTCAA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TAAACAATTACAAAACACCTTATGAATTGT
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	TATCGTAACCCCAACCCAAAAAGCGTTTCA
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAACGAAAATTTAAAAATCATCTAGGGGACTGTAGTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	ATTAGTTGATAGTGGAAAAAAGGATGATAG
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC	AAATGCGATTGCTTGGAGTGCTGCTATAAA
GTTTTAGAAGTGTGTTATTTTGGATGATTACAAAAC	AATTCAACTATGTAATGATATATTAAAAAC
GTTTTAGAAGTGTGTTATTTTGAATGATTACAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040902.1\|WP_168191629.1\|841025_845018_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
NZ_CP040902.1\|WP_022001080.1\|840435_840699_+\|metal-sensing-transcriptional-repressor	unknown	unknown	gnl\|CDD\|197394
NZ_CP040902.1\|WP_022002237.1\|858445_859120_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040902.1\|WP_117481360.1\|845014_845884_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP040902.1\|WP_032091607.1\|850087_850993_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040902.1\|WP_139939033.1\|836389_837304_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040902.1\|WP_139939043.1\|849583_850054_-\|YfcE-family-phosphodiesterase	unknown	unknown	gnl\|CDD\|223695
NZ_CP040902.1\|WP_022001075.1\|835369_835768_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040902.1\|WP_022002244.1\|851104_851254_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040902.1\|WP_022002238.1\|857269_858190_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274345
NZ_CP040902.1\|WP_139939035.1\|837573_837876_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376540
NZ_CP040902.1\|WP_022002243.1\|851250_852171_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040902.1\|WP_022002239.1\|856611_857301_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366664
NZ_CP040902.1\|WP_168191628.1\|835994_836315_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040902.1\|WP_107029915.1\|852247_853531_+\|trigger-factor	unknown	unknown	gnl\|CDD\|234956
NZ_CP040902.1\|WP_022002241.1\|853574_855896_+\|endopeptidase-La	unknown	unknown	gnl\|CDD\|223542
NZ_CP040902.1\|WP_107029917.1\|855950_856550_+\|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl\|CDD\|234770
NZ_CP040902.1\|WP_117783224.1\|846190_846868_+\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09644_csn2_CAS-II-A	gnl\|CDD\|213407
NZ_CP040902.1\|WP_139939041.1\|845888_846194_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP040902.1\|WP_139939037.1\|837946_840433_+\|heavy-metal-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783

Protein	Function_ID	Function_description	E-value
NZ_CP040902.1\|WP_168191629.1\|841025_845018_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	1.17314e-146
NZ_CP040902.1\|WP_022001080.1\|840435_840699_+\|metal-sensing-transcriptional-repressor	gnl\|CDD\|197394	cd10159, CsoR-like_DUF156_2, Uncharacterized family 2; belongs to a superfamily containing transcriptional regulators CsoR (copper-sensitive operon repressor), RcnR, and FrmR, and related domains; this family was previously known as part of DUF156. Uncharacterized family 2, belonging to a larger superfamily that contains various transcriptional regulators that respond to different stressors such as Cu(I), Ni(I), sulfite, and formaldehyde, and includes CsoRs (copper-sensitive operon repressors). CsoRs form homotetramers (dimer of dimers). In Mycobacterium tuberculosis CsoR, within each dimer, two Cys residues on opposite subunits, along with a His residue, bind the Cu(I) ion (forming a triagonal S2N coordination complex, C-H-C). These residues are conserved in the majority of members of this superfamily, including this family, and a conserved Tyr and a Glu residue that facilitate allosteric regulation of DNA binding for CsoRs are also conserved.	5.42942e-42
NZ_CP040902.1\|WP_117481360.1\|845014_845884_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	1.71896e-104
NZ_CP040902.1\|WP_022002241.1\|853574_855896_+\|endopeptidase-La	gnl\|CDD\|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP040902.1\|WP_022002239.1\|856611_857301_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|366664	pfam01476, LysM, LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.	2.91208e-06
NZ_CP040902.1\|WP_022002238.1\|857269_858190_+\|hypothetical-protein	gnl\|CDD\|274345	TIGR02904, hypothetical_conserved_protein, spore coat protein YsxE. Members of this family are homologs of the Bacillus subtilis spore coat protein CotS. Members of this family, designated YsxE, are found only in the family Bacillaceae, from among the endospore-forming members of the Firmicutes branch of the Bacteria. As a rule, the ysxE gene is found immediately downstream of spoVID, a gene necessary for spore coat assembly. The protein has been shown to be part of the spore coat. [Cellular processes, Sporulation and germination].	3.50624e-10
NZ_CP040902.1\|WP_139939035.1\|837573_837876_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|376540	pfam01381, HTH_3, Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within Neisseria gonorrhoeae NGO_0477, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family.	0.000642696
NZ_CP040902.1\|WP_107029915.1\|852247_853531_+\|trigger-factor	gnl\|CDD\|234956	PRK01490, tig, trigger factor; Provisional.	2.61357e-133
NZ_CP040902.1\|WP_139939043.1\|849583_850054_-\|YfcE-family-phosphodiesterase	gnl\|CDD\|223695	COG0622, COG0622, Predicted phosphoesterase [General function prediction only].	1.18937e-41
NZ_CP040902.1\|WP_107029917.1\|855950_856550_+\|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	5.86624e-100
NZ_CP040902.1\|WP_117783224.1\|846190_846868_+\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213407	cd09644, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	5.71216e-29
NZ_CP040902.1\|WP_139939041.1\|845888_846194_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.37123e-26
NZ_CP040902.1\|WP_139939037.1\|837946_840433_+\|heavy-metal-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0

>NZ_CP040902.1|WP_117783224.1|846190_846868_+|type-II-A-CRISPR-associated-protein-Csn2
MIMKIMGFDIEVDINKDKTNILVIDDHKLFGSFCYDLNRKDTEKVVFIDNDKLVNIKDIIIFNDILSFNFNDKTIITKLYNKLSKSIISNVEIDNELKKYFMKISNILYDEIEYYNVDIDLNEEIDLVKYFKLAGIEFDNKHNNLIEKFIDILEIYSELYDQTMIFINVLTYFSNEEIREILKYITYKKISVLFLENSYNRSVYFENKYVIDDDFYDYIIHDDKS
>NZ_CP040902.1|WP_139939041.1|845888_846194_+|CRISPR-associated-endonuclease-Cas2
MRIIVFFDLPSVTYVDQKEYNKFHKFLIKNGYIMMQESVYTKLALNNSIVISERDKLKKNKPSKGLVQLLVITEKQFARIEYVVGDKKTDVEDTESRLIIL
>NZ_CP040902.1|WP_117481360.1|845014_845884_+|type-II-CRISPR-associated-endonuclease-Cas1
MTWRTVVITNKAKLSYKNDYLIVRNDEVKLIHLSEINTIIIDTTAATMTSYLISEMLSRKIKIIICDKKRNPQGEIVSYYGSHNTSEQIFKQIKWDDYCKIIWTRIIEEKIINQANFLKELNIENYQMLYDYVGDLVLFDESNREGHAAKVYFNSLFGKSFTREDQCDINYALNYGYTILLSQFNKEIVSQGYLTQLGIKHHNVYNSFNLSSDLMEPFRPLVDKIVKENFNERFDGGMKVKLVDVLNHKVRIKGKDQYVSNAISIYVKSVFNAIDKKDVDLINFFEYEL
>NZ_CP040902.1|WP_168191629.1|841025_845018_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKNRGKIKYYIGVDIGTNSVGWAVIDENGYLLNKGKHHLWGSRLFDQAQTAQNRRNYRSSRRRYNKRKERIRLLQMIMSDMVLEVDSSFFIRLEKTTFLDKEDKKTILKDNYKMNYNLFCDEDYNDKDYFKVYPTIYHLRKKLCESDEKADPRLIYLALHHIVKYRGNFLYEGQELHLEPSNKEEDLKILFNMLSKNNDTTYDISDEQIQFILKTVVENISKTAKVDECMSHLKLNSEDKKIVKEFMRGLVGNKFNVSKLYMHEDLQFDDEDLKLQFSDKSYEEKIMEYENVLEEKMEFIDLMQRFYSWIELSKIVGSDSQHASISGAMVNIYESHREDLRTLKEVMLKIGKKEYDEMFKPTSKNVVNYYNYVNPVACSGDKTDGFYKYVKKAIEKSDDSRKDEILQKIANETYMLKQTSKNNAYIPYQMQKDELIKILDHQEKYYPVLKENRDKIISILEFRIPYYYGPLDGNKQFGWLIKKKGKENERILPWNHQEIVDVQETAAQFIKKLTNYCTYLPIEKVMPQKSLTCSMYEVLSEVNKIRIDGKLLPIDTKNRLIEDLFFKRKTVKEKDLINWLKQNQLTVGEITGYQKEKAFSSSLAPWIDFREIFDEINDSNYDLIEKIIEDMTIFNEGSILKERLKKAYNLDQNKVKKIMKLKYSGWSRLSKKLINGIRADNKFGSSVSILDVMKESHMALMEIINDQDLGFKQIIEKENFKNETGSFEYEDIENLAGSPALKRGIWQTLQVIEEIKNYMGHEPKNIYIEFAREEQEKVRTTTRVKKLKSIYNDIKNQLDVHGKEVYSNLNKQDEKSSIEKRLYLYYTQLGKCMYSGESLDIDKLSDYEIDHIFPRTLTSDDSLDNLVLVKKKENQRKLDDLVLPLEIRNKMEVFWKKLYDNGLITQTKYYRLMRDEFRRDQIDKFINRQLVETRQIIKHVANIIENHYEDTKVFTVRANLSHEFREKYGIYKNRNVNDFHHAHDAYIACIIGRYIQIRFPGLEAKYVYGQYMQNVKKTKNNIDKENHGFIINSMKYECIDEDTGEVIWDPERILDYIKCFNYRDVYITKKLDTNNRELFNVTILPSDKNSEKGKTKATIPVNKLRSNVRKYGGFSGLQSDIVAIEGKKGKKIDRRLINLPILLRYVSIEDQCKYIMENNKYSDIKIIKKIKKNQLIEIDGGLYYLSSATELVNAHQLILNNKENEIIFEINNAMIKNDYSYFENREIEITKLYNLLCDKMKKYYPKYKGIYEKILTKNIDFNILEIDLKCRVILEVLKILKAGAINGNLKFEPYNMTDREGRLSKQSIHLDNTYFYDVSITGIYSKKYKL
>NZ_CP040902.1|WP_022001080.1|840435_840699_+|metal-sensing-transcriptional-repressor
MMADKKQITRLLKTARGQIDGILKMVEEDRYCIDISHQIMASEAILKRANKEVLKAHMTHCVHDAVNSEDCDQKIEEMIKVLDNLLK
>NZ_CP040902.1|WP_139939037.1|837946_840433_+|heavy-metal-translocating-P-type-ATPase
MKKKYDVIGMTCSACSAHVDKAVRGLDGVDDVNVNLLQNSMTVEFDENKLSESQIFEAVDKAGYKAQNIGEKQVSNVQEDENEHKKKNLILSFIFLIPLFYISMGHMINWPLPSILLGHENMMIFVLVQLCLVVPIMFINRGYYIRGFKTLWNRSPNMDSLIALGSSAAFIYSLYATFMMAYYLGRMDMDMTHHYMMQLYFESAGMILTLISLGKYLESRSKQKTSEAIEKLMKLMPSTAIVLKDGKEVEIAIEDVQMGDVVIVKPGNNIPLDGKIIQGHGSINEAMITGESLPVDKTVGDQVIGSTNNLDGYMQVEVSHTSNDTTLSKIIRLVEEAGASKAPIAKLADKISGVFVPTVITIAIITFILWLTLGNKDFHFALNCAISVLVISCPCALGLATPTAIMVGTGKGANLGILVKSAQHLEELSKCDTIVLDKTGTLTEGKPQVTEVYPINIGENDLLKYAGSIEQYSKHPLAKAIHSYVLEQGISLDNLEHFEMKQGLGLVGDLKGEVLLSGNRRLMEENGVDLSSIEKLYKDLSAKGKTPLFYSYAGQLIGLIVVSDVLKQTSKHAIDCLKDMHMNIYMLTGDNQLTANAIADELGIEAIGEVLPQDKEKHVRDLQEKGHRVIMVGDGINDAPALVRSDVGIAMTSGIDIAIESADIVLMKNDLQDVVVAYELSKATIKNIKENLFWAFFYNVIGIPVAAGAFYSIFGWLLDPMYGAAAMSLSSVFVVSNALRLRFFKPKHQIIQIKENRKKEEKKMKKVLVEGMMCQHCKAHVEKALNEIDGVHATVDLENNCAFVEGEVDEASLKQAIEEAGYTYKGIE
>NZ_CP040902.1|WP_139939035.1|837573_837876_+|helix-turn-helix-transcriptional-regulator
MDKKLIDPLKLGLNLKKYIKKIGYKVKDIQNYLCLECPQPIYRWFKGSTYPSIHHLYALSCLFGVSMNELIEESDERKEWGYRIYQMKEEKMTLENQEIL
>NZ_CP040902.1|WP_139939033.1|836389_837304_+|hypothetical-protein
MEHVTFDEFFDFVKNEDANWYIPGLKEYFEGLNQDEIYIQDNFLGKLVYQFNKFENNLKKAVFDKFICYKKMMDEKEKSKLKNSANEIANVDLESAYSYNELFDNVSHNKLLEDINKYNNCGDVDSDLGIELRFNEIYDEETFNQGSLDIIGSVSFNSHKSGKVFDFPFTMTIGLDSDSYFEKEGDIYKIYKFREFYAFSKIYGTEDTIHYRYRKNDFPLEKYGTYGVHVDSDIPFAGDKYSIYMFRNDYAPFKYAFQCDCLTHLVKSELGKELLENGAKEDLLKILYNRIAYVVDESLMPKYD
>NZ_CP040902.1|WP_168191628.1|835994_836315_+|hypothetical-protein
MHDGSEVYLSDVTRPIKKELTYYLEVEDVLQNVIWKHFIQRDLTKDETKLVFEIDDEMLSLELKELLNDEINQDYLKLQRKVDLSFVAFEIVENEFIEFYKETMEI
>NZ_CP040902.1|WP_022001075.1|835369_835768_+|hypothetical-protein
MKKSYKGYIVWMILFCVGMVLMMIVDLKNLKLFSLILGNYMLMMITLLTGMIYKNECIYWYSGVSYQEAIEATSMSRKKYAYKHFIRFFITCLLYLFYSIIAYFLSFSFGMNMTICCLLIMVCALSTTSIKL
>NZ_CP040902.1|WP_139939043.1|849583_850054_-|YfcE-family-phosphodiesterase
MKKIVVMSDSHGYHQMINRVKELEPDGDYYVHCGDSEAETYMMQDWLCVKGNNDWYSDFPNQIKFKVDDLDFLVTHGHRFGYMDRETSMIYTLQEANCDVVLSGHTHVPMYKEVDGYTLINPGSTTLPRGGSNRSYCVIYVEGKDLKVEFKNLDDF
>NZ_CP040902.1|WP_032091607.1|850087_850993_-|hypothetical-protein
MYKKYLRNISMIFLCAFATFVYFKNDDVKTVKKKANMQTVIFKDQDETLIPVSVDIGVKDNKENNIRGIIETMKSKDFTQLGLYPIFNKKLELNALIMESNQLTFDFTNNFKVSNNQQALDICEALSYLFCKDGISKINMKIDGKAVSSFENTTIPLSCITPNLGINNFETSTFDLYQTSSVLVYNEKEIAGKTYYIPTTTRIQNTNQTIDQKVSLLLDHFENNTKVETTKKSQLNDGLLSIYLSSRILDNSENISPTLYSRLEKSFLSLPDVSSVHIYINNELIQEDQNVSTSIDNIVQI
>NZ_CP040902.1|WP_022002244.1|851104_851254_+|hypothetical-protein
MPLTDDDFVKTGKLEGYSEMIQKLHEEEQTQPEITYDLQLDDDEDEEEK
>NZ_CP040902.1|WP_022002243.1|851250_852171_+|hypothetical-protein
MIEDLIETGQYKEALQYLNDMDNEQVRYQRLVCLYGLKELQQAKREGMKAKVLAGETYYDVVAIYVSILKDLEEFEEAINIIVEELSMPYIPYQYETVFNAAYDELLLAKQEASFDGVTQKVFNEEDIENILTKKDTNEDLLYMAIEQMEGMNIRRMIVPIRQFIRDNDQPDFAKSLLIELMIDQEIDEDLEVVKKGVHYDINPSYAPMVLNQESGVEIYKLLMDALEDDNPSLLTMCEQFLNFYLYSIYPKYIDEQDYRSIAGAIHYHLASLQYIDIELEDIEYLYNCNQEDVKDVLETIQSIEY
>NZ_CP040902.1|WP_107029915.1|852247_853531_+|trigger-factor
MRTTTKKLENAVTQIKVTFDKKEWAEAQDAALKRLATRVKLDGFRPGKAPVAMIKARLGKQAIYDEATDQILQKRYADIMKKAEVAPIAQPTLNIDSVDNDNLKITILCPVKPEVELGEYKGLEVKKGRVTVAKKDIEAQVENYRHQFAELTTKENGEVAKGDTVVMDFEGFIDGEAFEGGKAENHSLEIGSGQFIPGFEDQMIGMTCENEKDVVVTFPEDYQATELAGKEATFKVTVHEIKEKVLPEADDELAKDVNIEGVETLDQLKDHIKAQLKSQKENEVENKFFSDLTQALIECCKVEDSEALLNSELDTMLREVEMNLQQQGLSFELYEQFTGKNKDAIKADLTDQAKDRVKLNLILAAIVEAENIEVTDEERNSELETIANTYNRDLEEIKQIFAQNMYQIDADILNRKALDVVKENLKK
>NZ_CP040902.1|WP_022002241.1|853574_855896_+|endopeptidase-La
MSESTLLTLPVVCTRGMIVFPGNRLSLDVGRPLSLKALELSSRDFDNNILFVSQINPIVDDPKYDDVYHVGTLCKIEKKIRRDSAGTIKLTVTGEKRVALRDFKIEDGSIFSTAEVLEDIYGDTNEEVALVRKTTAYFEQARRHMPHIPAESLTLLSNGTSASLLADTIGQYLPIDLDRKQKILEEQRINERLFLVASSIESEKMISQLEDTINRKVKESIDENQKEYYLREKLRAIKDELGDTVDKGDDADQIRKELAENPYPQYIKDKIEEELRRFEAMPPASSEANVVRTYIDWVMKTPWYQETKDEEDISKIEAILEEDHFGLEKVKERIVEHLAVKQMTQSLKAPIICLAGPPGVGKTSIAKSIARALDRKFVKASLGGVRDEAEVRGHRRTYLGSMPGRIIQGMKKAGVVNPVFLLDEIDKMASDYKGDPTSAMLEVLDPEQNSQFSDNYIEEPYDLSKVLFIATANDLGGIPGPLRDRLEIIEVSSYTEQEKLMIVKEHLIKKQLDAHSLKPEQMIISDDIIMEIIQHYTREAGVRELERYIAKLCRKTVLAILKEKVESVTIDQDKLVEFLGKAPFDHTKKLPRPQVGVVTGMAYTQFGGDILPIEVNHFDGTGKFIITGQLGDVMKESASIALDYLKANKEKYGLDDKAFDKQDIHIHVPEGAIKKDGPSAGVTLTTAIYSAFTNKPVRDDVAMTGEITLRGNVLPIGGLKEKSISAHRSGIRKIIIPKENEKDIEDIPESVRNDLEIVLADHIDTVLEHAIVK
>NZ_CP040902.1|WP_107029917.1|855950_856550_+|YihA-family-ribosome-biogenesis-GTP-binding-protein
MVKIKKAEYILSAAWKSQWPKESFPEMCLAGRSNVGKSSFINAMLSRNGLAKVSSTPGKTRTLNFFNVNDALYFVDVPGYGYAKVANNVTKQFGKTMDEYISERQTLRGFILLVDYRHKPTKDDVMMYEFVKHHGVPVIVVATKEDKLKRNDLKKNEKLIKDTLHFDPSDTFIRFSSLKKKGIQEAWNAIYELCDLDFE
>NZ_CP040902.1|WP_022002239.1|856611_857301_+|LysM-peptidoglycan-binding-domain-containing-protein
MQKIFYEKEIDLLHQLKELVSLTVDESIDYKIEDHGVRAVGSLAIKGEYISQEKRHFLENVELDVYADDQKIIDRQDFHLKVEDFHYDIIDGNLKIKIEVGVYGVEEGENRYIQLDEDPIDEIEKLSRDVETQTINEQVVAEAPEEIHDVEKLQEKIYETKEKEEKVDDDEDLGVYYLYVVLPNDTYASIARQYQVDEKMIRDYNQDLNLDAGQILIIPYAPKDHSNKV
>NZ_CP040902.1|WP_022002238.1|857269_858190_+|hypothetical-protein
MLQKIIQTKYDLDVIGLIQISPRVYKVKTANHFYCVKIVDEKKLEVAYQHLNTLHLHHFIHLILNNEQHYFTPFQDQYIYLMPYLQEDNHIKKEMKIKTYYQILAYLHNHSFFMQHEEDAFFKKQYDDLFSLIQQRKNDYEELMREFEFRKFKSPAGWMLVLNYYRIVHYLNQAHYYLSQYQEIMKGKNEIRLSLTYNHFNKEHIFVSDETLISIDQMKINYCIYDLIDIFQNHDELYESLPLLEYYLKEVKLLKEEKILIQCILSIVPQVQLNLQEEVNIYQMSKLICYLDGLQEIFKKLMIDEK
>NZ_CP040902.1|WP_022002237.1|858445_859120_+|hypothetical-protein
MNYFTEYWYVWIIFAIMCVFLFSFYGKKFKQVKEKRKQYEEKLAQEKDMFSHLTSDVFDKIEPIDLTRAVIFHINAKEDRLYEDDNYDGNIIPYLTHEELLIYTMYQLECSLEGGRGSIHSFFITEPYCNYRPYYKEAFETMKCYDIAHLLEEAEKLAILIENDQEDEIDETSEYATYNFSDFTNEFVSLLRSSGIGDKLGEYIKEHKESFIEKDDENEKRISE

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Crispr_ID: NZ_CP040902_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040902_2

2847055-2847974

TypeIII

Consensus_repeat	Method
GTTAGATATCATACTTATTAAGGATTAACGC	PILER-CR
GTTAGATATCATACTTATTAAGGATTAACGC	CRISPRCasFinder
GTTAGATATCATACTTATTAAGGATTAACGC	CRT

13 spacers

cas2,cas1,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10

The CRISPR arrays of NZ_CP040902_2

>merge|NZ_CP040902|2|2847055-2847974|PILER-CR,CRISPRCasFinder,CRT
GTTAGATATCATACTTATTAAGGATTAACGCTAAATAATCAAACACTAACATTGCAATCCCAAAAATTAAGTTAGATATCATACTTATTAAGGATTAACGCCTAATTTCTTTGATTATTTGTTCATCGTTTTCTTCAGTTAGATATCATACTTATTAAGGATTAACGCTAGATTTGTTAAATAAAATTGAGTAAGTTTTTATATTTGTTAGATATCATACTTATTAAGGATTAACGCTTTTATATACTATTTTTTTATTGATTTGATTTTCTATTGTTAGATATCATACTTATTAAGGATTAACGCTTTTGTCCAAAATGGTCAGTAAATCTATAACATTGTTTGTTAGATATCATACTTATTAAGGATTAACGCTTTCACAGGCATATTCATTATATTCACTTAATGAGAGTTAGATATCATACTTATTAAGGATTAACGCCAAGAGAAAAGAGCTTATTGGAACGTATCGAAGATGGTTAGATATCATACTTATTAAGGATTAACGCTATAATATTTCAATAATTCATATTCTAGTCTTGATAAAGGTTAGATATCATACTTATTAAGGATTAACGCAAACGAGGTATCTCTATTCCCTCATTTTTTAATTCTTCTGTTAGATATCATACTTATTAAGGATTAACGCTTGACACATGATAAGAATTGTTGTTCAAGTTTTTGTTAGATATCATACTTATTAAGGATTAACGCTCATACGTATATAACTGACAAATACTAGCAAAACTAAGTTAGATATCATACTTATTAAGGATTAACGCCTACTTGTTTTTGCTAATTCATCACTAACACCCTTTTCAGTTAGATATCATACTTATTAAGGATTAACGCTCTTTGATTTCGGTAACGATATATTTATCGTTTACATGTTAGACATCATGCTTATTAAGATTTATTTT

>NZ_CP040902|2|5|2847055-2847906|PILER-CR
GTTAGATATCATACTTATTAAGGATTAACGC	TAAATAATCAAACACTAACATTGCAATCCCAAAAATTAA
GTTAGATATCATACTTATTAAGGATTAACGC	CTAATTTCTTTGATTATTTGTTCATCGTTTTCTTCA
GTTAGATATCATACTTATTAAGGATTAACGC	TAGATTTGTTAAATAAAATTGAGTAAGTTTTTATATTT
GTTAGATATCATACTTATTAAGGATTAACGC	TTTTATATACTATTTTTTTATTGATTTGATTTTCTATT
GTTAGATATCATACTTATTAAGGATTAACGC	TTTTGTCCAAAATGGTCAGTAAATCTATAACATTGTTT
GTTAGATATCATACTTATTAAGGATTAACGC	TTTCACAGGCATATTCATTATATTCACTTAATGAGA
GTTAGATATCATACTTATTAAGGATTAACGC	CAAGAGAAAAGAGCTTATTGGAACGTATCGAAGATG
GTTAGATATCATACTTATTAAGGATTAACGC	TATAATATTTCAATAATTCATATTCTAGTCTTGATAAAG
GTTAGATATCATACTTATTAAGGATTAACGC	AAACGAGGTATCTCTATTCCCTCATTTTTTAATTCTTCT
GTTAGATATCATACTTATTAAGGATTAACGC	TTGACACATGATAAGAATTGTTGTTCAAGTTTTT
GTTAGATATCATACTTATTAAGGATTAACGC	TCATACGTATATAACTGACAAATACTAGCAAAACTAA
GTTAGATATCATACTTATTAAGGATTAACGC	CTACTTGTTTTTGCTAATTCATCACTAACACCCTTTTCA
GTTAGATATCATACTTATTAAGGATTAACGC

>NZ_CP040902|2|2|2847055-2847974|CRISPRCasFinder
GTTAGATATCATACTTATTAAGGATTAACGC	TAAATAATCAAACACTAACATTGCAATCCCAAAAATTAA
GTTAGATATCATACTTATTAAGGATTAACGC	CTAATTTCTTTGATTATTTGTTCATCGTTTTCTTCA
GTTAGATATCATACTTATTAAGGATTAACGC	TAGATTTGTTAAATAAAATTGAGTAAGTTTTTATATTT
GTTAGATATCATACTTATTAAGGATTAACGC	TTTTATATACTATTTTTTTATTGATTTGATTTTCTATT
GTTAGATATCATACTTATTAAGGATTAACGC	TTTTGTCCAAAATGGTCAGTAAATCTATAACATTGTTT
GTTAGATATCATACTTATTAAGGATTAACGC	TTTCACAGGCATATTCATTATATTCACTTAATGAGA
GTTAGATATCATACTTATTAAGGATTAACGC	CAAGAGAAAAGAGCTTATTGGAACGTATCGAAGATG
GTTAGATATCATACTTATTAAGGATTAACGC	TATAATATTTCAATAATTCATATTCTAGTCTTGATAAAG
GTTAGATATCATACTTATTAAGGATTAACGC	AAACGAGGTATCTCTATTCCCTCATTTTTTAATTCTTCT
GTTAGATATCATACTTATTAAGGATTAACGC	TTGACACATGATAAGAATTGTTGTTCAAGTTTTT
GTTAGATATCATACTTATTAAGGATTAACGC	TCATACGTATATAACTGACAAATACTAGCAAAACTAA
GTTAGATATCATACTTATTAAGGATTAACGC	CTACTTGTTTTTGCTAATTCATCACTAACACCCTTTTCA
GTTAGATATCATACTTATTAAGGATTAACGC	TCTTTGATTTCGGTAACGATATATTTATCGTTTACAT
GTTAGACATCATGCTTATTAAGATTTATTTT

>NZ_CP040902|2|2|2847055-2847974|CRT
GTTAGATATCATACTTATTAAGGATTAACGC	TAAATAATCAAACACTAACATTGCAATCCCAAAAATTAA
GTTAGATATCATACTTATTAAGGATTAACGC	CTAATTTCTTTGATTATTTGTTCATCGTTTTCTTCA
GTTAGATATCATACTTATTAAGGATTAACGC	TAGATTTGTTAAATAAAATTGAGTAAGTTTTTATATTT
GTTAGATATCATACTTATTAAGGATTAACGC	TTTTATATACTATTTTTTTATTGATTTGATTTTCTATT
GTTAGATATCATACTTATTAAGGATTAACGC	TTTTGTCCAAAATGGTCAGTAAATCTATAACATTGTTT
GTTAGATATCATACTTATTAAGGATTAACGC	TTTCACAGGCATATTCATTATATTCACTTAATGAGA
GTTAGATATCATACTTATTAAGGATTAACGC	CAAGAGAAAAGAGCTTATTGGAACGTATCGAAGATG
GTTAGATATCATACTTATTAAGGATTAACGC	TATAATATTTCAATAATTCATATTCTAGTCTTGATAAAG
GTTAGATATCATACTTATTAAGGATTAACGC	AAACGAGGTATCTCTATTCCCTCATTTTTTAATTCTTCT
GTTAGATATCATACTTATTAAGGATTAACGC	TTGACACATGATAAGAATTGTTGTTCAAGTTTTT
GTTAGATATCATACTTATTAAGGATTAACGC	TCATACGTATATAACTGACAAATACTAGCAAAACTAA
GTTAGATATCATACTTATTAAGGATTAACGC	CTACTTGTTTTTGCTAATTCATCACTAACACCCTTTTCA
GTTAGATATCATACTTATTAAGGATTAACGC	TCTTTGATTTCGGTAACGATATATTTATCGTTTACAT
GTTAGACATCATGCTTATTAAGATTTATTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040902.1\|WP_139940389.1\|2838775_2839249_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|101162
NZ_CP040902.1\|WP_117574371.1\|2853508_2854666_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340893
NZ_CP040902.1\|WP_139940391.1\|2839441_2841043_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NZ_CP040902.1\|WP_139940394.1\|2843092_2844238_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	COG1332_csm5gr7_CAS-III-A	gnl\|CDD\|224251
NZ_CP040902.1\|WP_139940402.1\|2852335_2853499_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340893
NZ_CP040902.1\|WP_117825348.1\|2848052_2848892_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319819
NZ_CP040902.1\|WP_117480513.1\|2855936_2856329_-\|arsenate-reductase-ArsC	unknown	unknown	gnl\|CDD\|319973
NZ_CP040902.1\|WP_139940398.1\|2845642_2846629_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|376633
NZ_CP040902.1\|WP_117347784.1\|2850987_2851392_+\|C_GCAxxG_C_C-family-protein	unknown	unknown	gnl\|CDD\|378246
NZ_CP040902.1\|WP_022002454.1\|2844930_2845668_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|187783
NZ_CP040902.1\|WP_139940396.1\|2844224_2844941_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040902.1\|WP_022002449.1\|2841043_2841502_+\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl\|CDD\|367635
NZ_CP040902.1\|WP_117825349.1\|2848905_2849745_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|369792
NZ_CP040902.1\|WP_022002450.1\|2841504_2842137_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274212
NZ_CP040902.1\|WP_117825339.1\|2842123_2843080_+\|hypothetical-protein	csm4gr5	mkCas0089_csm4gr5_CAS-III-A:CAS-III-D	gnl\|CDD\|273866
NZ_CP040902.1\|WP_117831978.1\|2854918_2855848_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040902.1\|WP_117825347.1\|2846630_2846894_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP040902.1\|WP_139940400.1\|2851402_2852290_-\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|224651
NZ_CP040902.1\|WP_022002459.1\|2849945_2850869_+\|calcium/sodium-antiporter	unknown	unknown	gnl\|CDD\|223604
NZ_CP040902.1\|WP_022002464.1\|2854710_2854896_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040902.1\|WP_139940389.1\|2838775_2839249_+\|hypothetical-protein	gnl\|CDD\|101162	PRK03002, prsA, peptidylprolyl isomerase PrsA.	0.0017615
NZ_CP040902.1\|WP_117574371.1\|2853508_2854666_+\|MFS-transporter	gnl\|CDD\|340893	cd17335, MFS_MFSD6, Major facilitator superfamily domain-containing protein 6. Human Major facilitator superfamily domain-containing protein 6 (MFSD6) is also called macrophage MHC class I receptor 2 homolog (MMR2). It has been postulated as a possible receptor for human leukocyte antigen (HLA)-B62. MFSD6 is conserved through evolution and appeared before bilateral animals. It belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.6389e-23
NZ_CP040902.1\|WP_139940391.1\|2839441_2841043_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	5.25726e-69
NZ_CP040902.1\|WP_139940394.1\|2843092_2844238_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|224251	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.77421e-11
NZ_CP040902.1\|WP_139940402.1\|2852335_2853499_+\|MFS-transporter	gnl\|CDD\|340893	cd17335, MFS_MFSD6, Major facilitator superfamily domain-containing protein 6. Human Major facilitator superfamily domain-containing protein 6 (MFSD6) is also called macrophage MHC class I receptor 2 homolog (MMR2). It has been postulated as a possible receptor for human leukocyte antigen (HLA)-B62. MFSD6 is conserved through evolution and appeared before bilateral animals. It belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.98717e-19
NZ_CP040902.1\|WP_117825348.1\|2848052_2848892_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319819	cd07517, HAD_HPP, phosphatase, similar to Bacteroides thetaiotaomicron VPI-5482 BT4131 hexose phosphate phosphatase; belongs to the haloacid dehalogenase-like superfamily. Bacteroides thetaiotaomicron VPI-5482 BT4131 is a phosphatase with preference for hexose phosphates. In addition this family includes uncharacterized Bacillus subtilis YkrA, a putative phosphatase and uncharacterized Streptococcus pyogenes MGAS10394 a putative bifunctional phosphatase/peptidyl-prolyl cis-trans isomerase. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	5.65416e-47
NZ_CP040902.1\|WP_117480513.1\|2855936_2856329_-\|arsenate-reductase-ArsC	gnl\|CDD\|319973	cd16345, LMWP_ArsC, Arsenate reductase of the LMWP family. Arsenate reductase plays an important role in the reduction of intracellular arsenate to arsenite, an important step in arsenic detoxification. The reduction involves three different thiolate nucleophiles. In arsenate reductases of the LMWP family, reduction can be coupled with thioredoxin (Trx)/thioredoxin reductase (TrxR) or glutathione (GSH)/glutaredoxin (Grx).	2.24551e-38
NZ_CP040902.1\|WP_139940398.1\|2845642_2846629_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	1.61202e-85
NZ_CP040902.1\|WP_117347784.1\|2850987_2851392_+\|C_GCAxxG_C_C-family-protein	gnl\|CDD\|378246	pfam09719, C_GCAxxG_C_C, Putative redox-active protein (C_GCAxxG_C_C). This entry represents a putative redox-active protein of about 140 residues, with four perfectly conserved Cys residues. It includes a CGAXXG motif. Most members are found within one or two loci of transporter or oxidoreductase genes. A member from Geobacter sulfurreducens, located in a molybdenum transporter operon, has a TAT (twin-arginine translocation) signal sequence for Sec-independent transport across the plasma membrane, a hallmark of bound prosthetic groups such as FeS clusters.	1.76144e-16
NZ_CP040902.1\|WP_022002454.1\|2844930_2845668_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|187783	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	6.36087e-27
NZ_CP040902.1\|WP_022002449.1\|2841043_2841502_+\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	1.16348e-07
NZ_CP040902.1\|WP_117825349.1\|2848905_2849745_+\|HAD-family-hydrolase	gnl\|CDD\|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	2.10349e-47
NZ_CP040902.1\|WP_022002450.1\|2841504_2842137_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|274212	TIGR02582, CRISPR_type_III-associated_RAMP_protein_Csm3, CRISPR type III-A/MTUBE-associated RAMP protein Csm3. Members of this CRISPR-associated (cas) gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm3, for CRISPR/cas Subtype Mtube, protein 3.	8.56827e-62
NZ_CP040902.1\|WP_117825339.1\|2842123_2843080_+\|hypothetical-protein	gnl\|CDD\|273866	TIGR01903, Hypothetical_protein., CRISPR type III-A/MTUBE-associated RAMP protein Csm4. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm4, for CRISPR/cas Subtype Mtube, protein 4.	3.33847e-05
NZ_CP040902.1\|WP_117825347.1\|2846630_2846894_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	8.27164e-19
NZ_CP040902.1\|WP_139940400.1\|2851402_2852290_-\|SIS-domain-containing-protein	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	6.93845e-41
NZ_CP040902.1\|WP_022002459.1\|2849945_2850869_+\|calcium/sodium-antiporter	gnl\|CDD\|223604	COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and metabolism].	1.69683e-63

>NZ_CP040902.1|WP_117825347.1|2846630_2846894_+|CRISPR-associated-endonuclease-Cas2
MYIICTYDVKSKNCPKFMKLLRRYLFHVQESVFEGELTPATYKKLTKELEKIITDADHVAIYYSYNSKMIKKQEIGNSIDKTRFIID
>NZ_CP040902.1|WP_139940398.1|2845642_2846629_+|CRISPR-associated-endonuclease-Cas1
MKKVIYLYKSGQLLCKDYSLILKDKKDYVSYIPIEQIDTLICFGEISINKRTLSLLNKHNIVILFFNFYGQYIGRFTPKQYLDGKIPINQIHIFENKTIRYHIAKTMIISSLKNCLALLKYYNKKQFPLLDNIIEIESIIKECKNKSVTELLLLEAQAKKIYFNSFDIILEKEKYHFIKRTKNPPQNEINALLSYGYSLLYANYISVIDRSRLYSQISFVHSLTKCSESLQFDLADILKPVLVDRLVLSLCRHKLLKDEYFDYKSDRCYLNKEGVKFFVEKYENYLLKTIKINNRYYSYRNLISREVHLLSNYIANESNDYKPYIMKW
>NZ_CP040902.1|WP_022002454.1|2844930_2845668_+|CRISPR-associated-endoribonuclease-Cas6
MRLKIQLSYNNFTVPMSYQSILQGVIYSLLSKDELGDFYHNDGYHYDKKTFKCFTFSQLFGKYKIENKHLIFDDDFYFYISSLDEKFLKHIYKTILLNNSLLINKQQVKIKNISILNLQPFIGTKKICIETLSPMLIYSTKDNYSTYYRPSDKESLNFIINNIQDKCLAYHYPIKELVFKIDYIIYEKRRMMKFKNCFYECFMTKLEIETNFETLSLIYNCGLSSKNSCGFGMIDIAHEKSNISL
>NZ_CP040902.1|WP_139940396.1|2844224_2844941_+|hypothetical-protein
MKKIEIELILPQGALFYQNINLFIYKQYINFLYKLNCFVVDQKCCSCPFSKECYYYHCTGENFKYYPNILIENPIFTQAIFQKEEVLKISFFIIGEDIKHMNYIKLFFQSYLNQKIQGYFFYLKNINMIDCNQKNISLNHIMISSCIKTTHFTDEYNQMINYYNKHYLTQYNNLSNYMVDIKNIKHSQQEGIQFKTKKIVPRGFTYQISFNEDINIPLDILYIGIGHFNFIGGGELET
>NZ_CP040902.1|WP_139940394.1|2843092_2844238_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MTYKISILTPVHISSGNKNACFLYHPDKNDHFNCYRIEDLLQFIPPQKLLELQPDNASNNGKKDIIKLFNNYINYNQLKPQYFLFYKFKPFSKDVTEQVKSLNKPYIPGSSIKGAIMNAIIFDLLNDNKEKIKEFLINFNKNLSKNFEKELSSYLFGKDFEEIFKLFSSCICCEDIFFETMILCDSDRLNMKKSNHKKSQEFSKFECIDNLQEKKTNLFMIDQTRQKVFLNKYSNKEIIKKLRIFFNKRNIIIACRNYFRTVIKDDKKYFIEDQFDYFKESDFEGRDQIINFLNTISFDNKDICYLRIGNSTNYFYKSISIFIKKNFYEFYDNNFSLFAPIRLGKKNSPKADTMPKTRIIFKYDSECYLPGFIKVEPYEEN
>NZ_CP040902.1|WP_117825339.1|2842123_2843080_+|hypothetical-protein
MKEYKLVFKPLSTITNIPNAQTIFGAICNIIVNTQGEEALNNYISSFNNQPLFIHSSMFPLNMLPMVHYNIFDIDYINHNILKEKSIDQLSYLQTLKNYKKINYTTESIFNDYIIKSDFNKMRDDLLNKKINIKNYCLQKASENILFEQTKQLNTHVRKKDYYNTSIGDDNALYYDDTIYTNGLFYILVKTNENIKKIKDIFSYSHFFGFGPRHSVGKNSFKLISIEEIKRKPNLNNKLLLSQSVFDECINLSESNYQIISKQYHPSKTYINKTTHKMNLFNEGSYLKLTQDKEWIGKILSFNIDKKPLYYYGIGYII
>NZ_CP040902.1|WP_022002450.1|2841504_2842137_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MLKKTHRIQLKIELLSGMHITGGDDTFDIGGADSQVIKNPLTGEPYIPGSTLKGKIRSLLEFKYGTFINNELKPVPEHNQLLSLFEPNTNDIPQMTRAIFRDAVLTESSKIELQTYLGEHTYTEIKAENKINRFKGTADAPRFIERVPAGSKFIGYIDLLEFDNDDYQTLYKYLETGVNLLNYNYIGGSGSRGYGRIQIEMEELNNNEGI
>NZ_CP040902.1|WP_022002449.1|2841043_2841502_+|type-III-A-CRISPR-associated-protein-Csm2
MSYNTKQHRLPNKPPKERNNMPEKITIPLSEKYTNPAEIFLDTGIAYKIANKMGDIAPHQLRKILNVLKESVTIVKRNPNKFIDARNKLYYIVPLTAYNTGRNKGLQELYNFVYQHINEKAIQSPKDIEILDQIFTSIIAYHKVLNQNKKEK
>NZ_CP040902.1|WP_139940391.1|2839441_2841043_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MLEFDVSGIQSFIYKITEGSKTKTNIAKSLRGRSAFVTLITNAITYTILDKFKLTQANIIFNTGGGALLLLPYLDDTEKIIHNTFNTITKELYKRFNTSLSVVYAIEKVDKFELSNFKTEKALALKTKLEEYKLKKFYPLINNDFCVEHLEDKEICELCGQNYVKKDHKCQNCLDILNISDYYTKHDKFTILYSNLDYNNCLMDLGFIKIYFFEKIPHELINKNDFYYIDAVNHFEAGNVKLLANLVPKENNTILNFENITKTLDKSYGDEKLGVLKMDVDNLGAIFAFGLKQGKNNDVTLQRSLSKYLTLSRFIELFFGYKLKQICLDLSKKLQNKNENIFYINYAGGDDLVILGPIYGILQLANKIHIEFKEFVQNTNITLSAGIHIQNPKKPIRFGIKMADNALEASKSYVKDDRSKNAITIMNSTFSFEELPNILNKIETYRGYLNDKTNPLSRTGFYNIMSHMDNKTLDEYYSTIPIIQYSLYRQIDNSHETLRKKILQDLTTLKTDEEINKQVTIMKLVILFTREVN
>NZ_CP040902.1|WP_139940389.1|2838775_2839249_+|hypothetical-protein
MRKKNFLFIVAMVFILMLSGCGKSSTSEPITTTKFKTIMEEKGLEVTDKTDSAKDHSYQEIYVAVDEEKYSFEYYFMKNEQSATNVYKYAVDNLNKTYKENNSAKITENENNTQSVYDVTASDYHCKVIKKENTVLYVTAYPEYKEDAEKLVKELGY
>NZ_CP040902.1|WP_117825348.1|2848052_2848892_+|Cof-type-HAD-IIB-family-hydrolase
MSKIVFLDVDGTLIDYETKLPDSARKAVDQARANGHKAYICTGCSKDEILQRNLCELDGMILGNGTYVEDHDHVIMHQALPLEEVKKIVHWCKERKLAFYLETNSGVYCNDQMIKDGPAVMIKYGQGKGANLENAKEKAQSFIDSFTLIHGDEFYREDVNKIDFIIRDYQDHLDAIRDFPHLAHNTWGGKGELALFSDLGPTGINKKHAIEVLLDYLKVNKENTISFGDAKVDLSMFECCGFNVAMGNGGKEIKEAADYITDDVNEDGLYNAFKYLKLI
>NZ_CP040902.1|WP_117825349.1|2848905_2849745_+|HAD-family-hydrolase
MSKIVFLDVDGTLIDYEAKLPASAAKAVDQARANGHKVYICTGCSKAEILQRNLCDLDGMIGGNGAYVEDNGHVVMHQGLSKEDVKNIVDWCNERHIGFYLEANSGMYCNDYMLEQGPETMVKYAKGKGASLENAKSSAQHFIDGFIHLQGDELYRDDVNKISFILRTYQDHLDSKVDFPHLVANTWGGKGEVALFGDLGPTGITKRHAIEVLLDYLHADPKDTISFGDAKIDLSMFECCAYNVAMGNGGFEIKEAADYITDDVNEDGLYNAFKYLKLI
>NZ_CP040902.1|WP_022002459.1|2849945_2850869_+|calcium/sodium-antiporter
MIQQVIILLVGFIFLVKGADWFVEGAASIARKLGIPQLIIGLTIVAMGTSMPEAAVSITAALQQNAGITIGNVVGSNILNIFIILGITALITNVKIQKSTIRYEIPFMIFITIILMICGMTDMKITFIEGIFLWILFIAYLVYLFVMAKNGETQEEEKDIPVWKCLIFILIGGILVVKGSDFAVSGASAIARYFGMSERFIGLTIVAFGTSLPELVTSVTAAKRGNAGIAIGNIVGSNIFNILFVIGTTSLICNVPFESKFLVDTIIAIIAGLILWFGTMKHQELRKPCGIVMLLCYMFYFIYLCLM
>NZ_CP040902.1|WP_117347784.1|2850987_2851392_+|C_GCAxxG_C_C-family-protein
MSQREEKVLSLHKHGYNCAQALICSYQDILPFEEKELFKLTEGLGRGVAGLEEMCCVPILIAMIYSCLKTCDGNVENPQSKLKSYACGKCLAMDFKEQAGSLCCHTLLKENKEKKRCCSDLLKLGIAILDDCLK
>NZ_CP040902.1|WP_139940400.1|2851402_2852290_-|SIS-domain-containing-protein
MLLQEQMKQDIFSYNEKTIINFILEKQEQIKDYSTKMIGDETYTAPSTIIRIAHKLGFQGWSDFKEAFLDEVIYLNNHFQEIDPNLPFTNQDTMMQIAHKITQLHIESAKDTASLIQHDTLQKALRIMAKADVIKVFAVANLNFIGEEFVFKLNRIHKRAYIEPVQDNQFQDAIMTTSNECAICLSYSGETPTLLKTAQYLKENNVPIIAITSLGKNRLSDLADVSLNISTREKSFSKIAGFTSLESMNIVLNILYSCLFSLNYQANLDYKIEVARRVETNRKIDNEIIEELKED
>NZ_CP040902.1|WP_139940402.1|2852335_2853499_+|MFS-transporter
MYLLKYYKNSYLSYFLMYFFFFFSLAFFSGFLSVYLMDQGFSASQVSFVVSCSFILSVIVQPFIGKLNDVYESKYVNGVLLLIAGLLGIVFMFLKNIYLIALVYSLVLSITNGTNPIIERMAVLSRFKYGSIRVWATIGYAIATIISGYIYKNIGSFSLYVFFAIGEFLCVIGLLGTQSILPPVEKTNEKISMSSVFKIKHIPYYLIIVCLFYGITNVHHLYLPAMLKQSGLPINNVSNVIFVSTLSEVPVTLLSHFYMNRFSNKQLLMSVFILLCIQFFTFSFLSSLIIQIMIVFLTKTVATMAFVMINLRIISTIVDNARQNTALSLVSACKSFASIVFQMLAGYLIDFTGYQMFYFVLFICSVIGMVLVFFFKVPTNKDLKVFH
>NZ_CP040902.1|WP_117574371.1|2853508_2854666_+|MFS-transporter
MLERYKNSYLCYFLMYNFYYLSWAIFSALISIYLLDKGFKASEVSLVVSTSFLTSMIFQPVIGMFSDRYDVKKVNFVLFTLAGIGGLAFMFASSLITITIGYSFVLTLINGTNPVMEKIASSSPYQYGKIRIWGTIGYATGSWLAGMIYQLISPSAIFICFIITMILCIIGLLGTQTPSELGQNNEEKTKTSTLFHNYKYLYYLIIAAIFQGITNMANTYIPAMFQNDGLKVSLVSTILSFAVLCEAPLVLFSHKFMDKLTNKRLLIIAYSMITIQFLCYALNVWLPLKVIITLITKHPSGMLFIMINLKIVSTLVPKEHQITALAFVQTLRNLSSIIFQNIAGQILDISSYQILFALSLIVIVVGFVLVILFKVPSGKDQKLFN
>NZ_CP040902.1|WP_022002464.1|2854710_2854896_-|hypothetical-protein
MCNLGEILELEAIKSERVRNIKSIMTKLKMSFKEAIAFLEIPEDEVLELEDAFNNDLKNKN
>NZ_CP040902.1|WP_117831978.1|2854918_2855848_-|hypothetical-protein
MQQLNLITRSNKTIMYDQYCKMLIGHPYMLARIISCFVEEAKHLSLDEIKKLIKGVRIGDKIVNPHFHLMDKEAFIKDEGLMCYDIYFYIDLPQIVQSTKRVYINIEIQNNPYTKYHLVTRSIAYSSRMISSQWGREYDSENYDGMKKVYSFWIMPQATKSKDGCINQLKIAENHLSGNYEEKIENYDKEEQLMIYLSKGHSPNDKYESYDEILMPIGALLNNTLNYQEKNEVIKEYGLDDEEFKERMRDMCNLGEALELEARQEESKRKDVEHVRNIIDEFHCSLEKAMDILKLTEKERQEIMPYFQA
>NZ_CP040902.1|WP_117480513.1|2855936_2856329_-|arsenate-reductase-ArsC
MKKVAFICVHNSCRSQIAEALGKHLASDVFESYSAGSEIKNQINPDAVRLMKNLYGIDMEKTQHPKLINEIPQADMLISMGCNVGCPFVGKEFDDNWQLDDPTGKEDQEFIKVIHEIEEKILKLKEELME

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP040902_1	1.2\|847007\|28\|NZ_CP040902\|PILER-CR	847007-847034	28	NZ_CP040902.1	1537365-1537392	0	1.0
NZ_CP040902_1	1.4\|847005\|30\|NZ_CP040902\|CRISPRCasFinder,CRT	847005-847034	30	NZ_CP040902.1	1537363-1537392	0	1.0

1. spacer 1.2|847007|28|NZ_CP040902|PILER-CR matches to position: 1537365-1537392, mismatch: 0, identity: 1.0

acctttgcaccacgttgtaatacagctt	CRISPR spacer
acctttgcaccacgttgtaatacagctt	Protospacer
****************************

2. spacer 1.4|847005|30|NZ_CP040902|CRISPRCasFinder,CRT matches to position: 1537363-1537392, mismatch: 0, identity: 1.0

aaacctttgcaccacgttgtaatacagctt	CRISPR spacer
aaacctttgcaccacgttgtaatacagctt	Protospacer
******************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040902_1	1.12\|847533\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	847533-847562	30	NZ_CP040343	Bacillus cereus strain DLOU-Weihai plasmid unnamed1, complete sequence	242736-242765	4	0.867
NZ_CP040902_1	1.12\|847533\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	847533-847562	30	NZ_CP041978	Bacillus pacificus strain NCCP 15909 plasmid unnamed1, complete sequence	217720-217749	4	0.867
NZ_CP040902_1	1.12\|847533\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	847533-847562	30	CP041980	Bacillus paranthracis strain NCCP 15910 plasmid unnamed, complete sequence	200671-200700	4	0.867
NZ_CP040902_1	1.24\|848324\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848324-848353	30	NZ_CP024446	Moraxella osloensis strain NP7 plasmid pNP7-3, complete sequence	10531-10560	5	0.833
NZ_CP040902_1	1.3\|846939\|30\|NZ_CP040902\|CRISPRCasFinder,CRT	846939-846968	30	NZ_CP018261	Acinetobacter haemolyticus strain XH900 plasmid pXH901, complete sequence	52257-52286	6	0.8
NZ_CP040902_1	1.3\|846939\|30\|NZ_CP040902\|CRISPRCasFinder,CRT	846939-846968	30	NZ_CP018873	Acinetobacter haemolyticus strain TJS01 plasmid pAHTJS2, complete sequence	31967-31996	6	0.8
NZ_CP040902_1	1.8\|847269\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	847269-847298	30	NZ_CP015111	Acinetobacter sp. TGL-Y2 plasmid unnamed1, complete sequence	249846-249875	6	0.8
NZ_CP040902_1	1.22\|848192\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848192-848221	30	KT997855	Uncultured Mediterranean phage uvDeep-CGR2-AD12-C183, complete genome	6092-6121	6	0.8
NZ_CP040902_1	1.26\|848456\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848456-848485	30	NZ_CP013579	Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence	1052055-1052084	6	0.8
NZ_CP040902_1	1.26\|848456\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848456-848485	30	NZ_CP013546	Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence	946435-946464	6	0.8
NZ_CP040902_1	1.26\|848456\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848456-848485	30	NZ_CP013573	Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence	1052055-1052084	6	0.8
NZ_CP040902_1	1.26\|848456\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848456-848485	30	LR214961	Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 7	1349-1378	6	0.8
NZ_CP040902_1	1.5\|847071\|30\|NZ_CP040902\|CRISPRCasFinder,CRT	847071-847100	30	NC_031922	Synechococcus phage S-CAM9 isolate 1109NB16, complete genome	20312-20341	7	0.767
NZ_CP040902_1	1.5\|847071\|30\|NZ_CP040902\|CRISPRCasFinder,CRT	847071-847100	30	KU686204	Synechococcus phage S-CAM9 isolate 0808SB05, complete genome	20312-20341	7	0.767
NZ_CP040902_1	1.5\|847071\|30\|NZ_CP040902\|CRISPRCasFinder,CRT	847071-847100	30	KU686205	Synechococcus phage S-CAM9 isolate 0908SB82, complete genome	20312-20341	7	0.767
NZ_CP040902_1	1.9\|847335\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	847335-847364	30	NZ_CP045351	Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence	82053-82082	7	0.767
NZ_CP040902_1	1.10\|847401\|30\|NZ_CP040902\|CRISPRCasFinder,CRT	847401-847430	30	NZ_CP045351	Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence	82053-82082	7	0.767
NZ_CP040902_1	1.12\|847533\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	847533-847562	30	NZ_CP024036	Bacillus aryabhattai strain K13 plasmid unnamed1	134919-134948	7	0.767
NZ_CP040902_1	1.12\|847533\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	847533-847562	30	NZ_CP023318	Bacillus megaterium strain A plasmid p1, complete sequence	75791-75820	7	0.767
NZ_CP040902_1	1.18\|847928\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	847928-847957	30	NC_014031	Bacillus megaterium QM B1551 plasmid pBM600, complete sequence	35518-35547	7	0.767
NZ_CP040902_1	1.18\|847928\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	847928-847957	30	NZ_CP041069	Bacillus megaterium strain KNU-01 plasmid pKNU_01_5, complete sequence	54174-54203	7	0.767
NZ_CP040902_1	1.18\|847928\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	847928-847957	30	NZ_CP032531	Bacillus megaterium NCT-2 plasmid pNCT2_3, complete sequence	13793-13822	7	0.767
NZ_CP040902_1	1.19\|847994\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	847994-848023	30	NZ_CP045341	Vibrio sp. THAF190c plasmid pTHAF190c_c, complete sequence	120249-120278	7	0.767
NZ_CP040902_1	1.20\|848060\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848060-848089	30	KY224000	Mycobacterium phage Rich, complete genome	38823-38852	7	0.767
NZ_CP040902_1	1.21\|848126\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848126-848155	30	LC316979	Lactococcus garvieae plasmid pNUF18 DNA, complete sequence, strain: NUF18	21513-21542	7	0.767
NZ_CP040902_1	1.21\|848126\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848126-848155	30	LC316980	Lactococcus garvieae plasmid pNUF462 DNA, complete sequence, strain: NUF462	21513-21542	7	0.767
NZ_CP040902_1	1.21\|848126\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848126-848155	30	LC316981	Lactococcus garvieae plasmid pNs15sousui29 DNA, complete sequence, strain: Ns15sousui29	22524-22553	7	0.767
NZ_CP040902_1	1.21\|848126\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848126-848155	30	LC205736	Lactococcus garvieae plasmid pBSLG13015 DNA, complete sequence, strain: BSLG13015	22524-22553	7	0.767
NZ_CP040902_1	1.22\|848192\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848192-848221	30	MN693876	Marine virus AFVG_250M699, complete genome	23763-23792	7	0.767
NZ_CP040902_1	1.29\|848654\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848654-848683	30	NZ_CP037435	Lactobacillus plantarum strain EM plasmid pEM6, complete sequence	50044-50073	7	0.767
NZ_CP040902_1	1.29\|848654\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848654-848683	30	NC_011101	Lactobacillus plantarum plasmid pLTK13, complete sequence	31250-31279	7	0.767
NZ_CP040902_1	1.29\|848654\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848654-848683	30	NZ_CP018329	Lactobacillus plantarum subsp. plantarum strain TS12 plasmid pLP12-5, complete sequence	19154-19183	7	0.767
NZ_CP040902_1	1.29\|848654\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848654-848683	30	NZ_CP033889	Lactobacillus plantarum strain LMT1-48 plasmid p_1, complete sequence	53085-53114	7	0.767
NZ_CP040902_1	1.29\|848654\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848654-848683	30	NZ_CP028980	Lactobacillus plantarum strain LQ80 plasmid pLQ803, complete sequence	15276-15305	7	0.767
NZ_CP040902_1	1.29\|848654\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848654-848683	30	NZ_CP032755	Lactobacillus plantarum subsp. argentoratensis strain DSM 16365 plasmid unnamed4, complete sequence	17372-17401	7	0.767
NZ_CP040902_1	1.29\|848654\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848654-848683	30	NZ_CP024414	Lactobacillus plantarum strain ATCC 8014 plasmid pLP49, complete sequence	19666-19695	7	0.767
NZ_CP040902_1	1.29\|848654\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848654-848683	30	NZ_CP017364	Lactobacillus plantarum strain TMW 1.277 plasmid pL1277-1, complete sequence	17840-17869	7	0.767
NZ_CP040902_1	1.29\|848654\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848654-848683	30	NZ_CP023307	Lactobacillus plantarum strain LLY-606 plasmid p.LLY60601, complete sequence	10876-10905	7	0.767
NZ_CP040902_1	1.29\|848654\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848654-848683	30	NZ_CP025413	Lactobacillus plantarum strain X7021 plasmid unnamed1, complete sequence	12701-12730	7	0.767
NZ_CP040902_1	1.29\|848654\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848654-848683	30	NZ_CP028243	Lactobacillus plantarum strain SRCM101518 plasmid unnamed2, complete sequence	37762-37791	7	0.767
NZ_CP040902_1	1.31\|848786\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848786-848815	30	NZ_CP012754	Klebsiella pneumoniae strain KP617 plasmid KP-p1, complete sequence	225284-225313	7	0.767
NZ_CP040902_1	1.31\|848786\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848786-848815	30	NZ_CP008933	Klebsiella pneumoniae strain PMK1 plasmid pPMK1-NDM, complete sequence	156369-156398	7	0.767
NZ_CP040902_1	1.31\|848786\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848786-848815	30	NZ_CP022612	Klebsiella pneumoniae strain CDC 0106 plasmid unnamed1, complete sequence	81292-81321	7	0.767
NZ_CP040902_1	1.31\|848786\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848786-848815	30	NC_016980	Klebsiella pneumoniae plasmid pNDM-MAR, complete sequence	101169-101198	7	0.767
NZ_CP040902_1	1.31\|848786\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848786-848815	30	NZ_CP020902	Klebsiella pneumoniae strain K66-45 plasmid pK66-45-1, complete sequence	65616-65645	7	0.767
NZ_CP040902_1	1.31\|848786\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848786-848815	30	NZ_CP006799	Klebsiella pneumoniae subsp. pneumoniae PittNDM01 plasmid p1, complete sequence	235034-235063	7	0.767
NZ_CP040902_1	1.31\|848786\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848786-848815	30	NZ_CP034406	Klebsiella pneumoniae strain NH34 plasmid pNH34.1, complete sequence	193855-193884	7	0.767
NZ_CP040902_1	1.31\|848786\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848786-848815	30	NZ_CP020854	Klebsiella pneumoniae strain KPN528 plasmid pKPN528-1, complete sequence	130364-130393	7	0.767
NZ_CP040902_1	1.31\|848786\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848786-848815	30	NZ_CP036336	Klebsiella pneumoniae strain BP327 plasmid pIncHIB, complete sequence	51619-51648	7	0.767
NZ_CP040902_1	1.31\|848786\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848786-848815	30	NZ_CP020068	Klebsiella pneumoniae strain AR_0068 plasmid unitig_1, complete sequence	33903-33932	7	0.767
NZ_CP040902_1	1.31\|848786\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848786-848815	30	NZ_CP028929	Klebsiella pneumoniae strain AR_0153 plasmid unnamed1, complete sequence	225441-225470	7	0.767
NZ_CP040902_1	1.31\|848786\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848786-848815	30	NZ_CP016921	Klebsiella pneumoniae isolate 11 plasmid pIncHI1B_DHQP1300920, complete sequence	109427-109456	7	0.767
NZ_CP040902_1	1.31\|848786\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848786-848815	30	CP050156	Klebsiella pneumoniae plasmid Carbapenemase(NDM-1)_IncH1B, complete sequence	28571-28600	7	0.767
NZ_CP040902_1	1.31\|848786\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848786-848815	30	NZ_AP018748	Klebsiella pneumoniae strain KP33 plasmid pKP3301, complete sequence	166646-166675	7	0.767
NZ_CP040902_1	1.31\|848786\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848786-848815	30	MK649825	Klebsiella pneumoniae strain BA813 plasmid pBA813_1, complete sequence	200330-200359	7	0.767
NZ_CP040902_1	1.31\|848786\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848786-848815	30	MN692993	Marine virus AFVG_117M87, complete genome	24792-24821	7	0.767
NZ_CP040902_1	1.9\|847335\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	847335-847364	30	NZ_CP041427	Escherichia coli strain STEC388 plasmid pSTEC388_2, complete sequence	37665-37694	8	0.733
NZ_CP040902_1	1.10\|847401\|30\|NZ_CP040902\|CRISPRCasFinder,CRT	847401-847430	30	NZ_CP041427	Escherichia coli strain STEC388 plasmid pSTEC388_2, complete sequence	37665-37694	8	0.733
NZ_CP040902_1	1.15\|847730\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	847730-847759	30	NZ_CP047429	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-1, complete sequence	46317-46346	8	0.733
NZ_CP040902_1	1.15\|847730\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	847730-847759	30	NC_047881	Shigella phage SSP1, complete genome	11681-11710	8	0.733
NZ_CP040902_1	1.15\|847730\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	847730-847759	30	NC_015269	Enterobacteria phage SPC35, complete genome	17582-17611	8	0.733
NZ_CP040902_1	1.16\|847796\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	847796-847825	30	NZ_AP021882	Sulfuriferula nivalis strain SGTM plasmid SGTM_pl1, complete sequence	11877-11906	8	0.733
NZ_CP040902_1	1.18\|847928\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	847928-847957	30	MN693189	Marine virus AFVG_25M326, complete genome	3395-3424	8	0.733
NZ_CP040902_1	1.22\|848192\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848192-848221	30	NZ_CP011009	Bacillus simplex strain SH-B26 plasmid pSHB26, complete sequence	96318-96347	8	0.733
NZ_CP040902_1	1.24\|848324\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848324-848353	30	MN694740	Marine virus AFVG_250M752, complete genome	13315-13344	8	0.733
NZ_CP040902_2	2.2\|2847156\|36\|NZ_CP040902\|PILER-CR,CRISPRCasFinder,CRT	2847156-2847191	36	NC_015420	Lactobacillus buchneri NRRL B-30929 plasmid pLBUC01, complete sequence	37692-37727	8	0.778
NZ_CP040902_1	1.9\|847335\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	847335-847364	30	MH412654	Synechococcus phage S-T4, complete genome	90878-90907	9	0.7
NZ_CP040902_1	1.10\|847401\|30\|NZ_CP040902\|CRISPRCasFinder,CRT	847401-847430	30	MH412654	Synechococcus phage S-T4, complete genome	90878-90907	9	0.7
NZ_CP040902_1	1.19\|847994\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	847994-848023	30	MT635598	Bacteroides phage Bacuni_F1, complete genome	7579-7608	9	0.7
NZ_CP040902_1	1.19\|847994\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	847994-848023	30	MT806187	Bacteroides phage F2, partial genome	2754-2783	9	0.7
NZ_CP040902_1	1.19\|847994\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	847994-848023	30	MT806185	Bacteroides phage F4, complete genome	32413-32442	9	0.7
NZ_CP040902_1	1.26\|848456\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848456-848485	30	NZ_CP011513	Paenibacillus peoriae strain HS311 plasmid unnamed, complete sequence	112756-112785	9	0.7
NZ_CP040902_1	1.31\|848786\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848786-848815	30	MT774389	CrAssphage cr116_1, complete genome	13409-13438	9	0.7
NZ_CP040902_1	1.21\|848126\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848126-848155	30	AP014715	Edwardsiella phage PEi26 DNA, complete sequence	12115-12144	10	0.667
NZ_CP040902_1	1.21\|848126\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	848126-848155	30	NC_028683	Edwardsiella phage PEi20 DNA, complete sequence	12128-12157	10	0.667
NZ_CP040902_2	2.9\|2847634\|39\|NZ_CP040902\|PILER-CR,CRISPRCasFinder,CRT	2847634-2847672	39	MN304819	Phage 33_17, complete genome	39897-39935	10	0.744
NZ_CP040902_1	1.9\|847335\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	847335-847364	30	NZ_CP013040	Clostridium perfringens strain JP838 plasmid pJFP838C, complete sequence	43171-43200	11	0.633
NZ_CP040902_1	1.9\|847335\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	847335-847364	30	NZ_CP013041	Clostridium perfringens strain JP55 plasmid pJFP55F, complete sequence	57241-57270	11	0.633
NZ_CP040902_1	1.10\|847401\|30\|NZ_CP040902\|CRISPRCasFinder,CRT	847401-847430	30	NZ_CP013040	Clostridium perfringens strain JP838 plasmid pJFP838C, complete sequence	43171-43200	11	0.633
NZ_CP040902_1	1.10\|847401\|30\|NZ_CP040902\|CRISPRCasFinder,CRT	847401-847430	30	NZ_CP013041	Clostridium perfringens strain JP55 plasmid pJFP55F, complete sequence	57241-57270	11	0.633
NZ_CP040902_1	1.9\|847335\|30\|NZ_CP040902\|CRISPRCasFinder,CRT,PILER-CR	847335-847364	30	NZ_CP053316	Bacillus circulans strain GN03 plasmid unnamed, complete sequence	98680-98709	12	0.6
NZ_CP040902_1	1.10\|847401\|30\|NZ_CP040902\|CRISPRCasFinder,CRT	847401-847430	30	NZ_CP053316	Bacillus circulans strain GN03 plasmid unnamed, complete sequence	98680-98709	12	0.6

1. spacer 1.12|847533|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040343 (Bacillus cereus strain DLOU-Weihai plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.867

tattc-ttgattagaaaaagactaggtgtaa	CRISPR spacer
-atacattgattagaaaaagactagtagtaa	Protospacer
 ** * *******************  ****

2. spacer 1.12|847533|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041978 (Bacillus pacificus strain NCCP 15909 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.867

tattc-ttgattagaaaaagactaggtgtaa	CRISPR spacer
-atacattgattagaaaaagactagtagtaa	Protospacer
 ** * *******************  ****

3. spacer 1.12|847533|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to CP041980 (Bacillus paranthracis strain NCCP 15910 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.867

tattc-ttgattagaaaaagactaggtgtaa	CRISPR spacer
-atacattgattagaaaaagactagtagtaa	Protospacer
 ** * *******************  ****

4. spacer 1.24|848324|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024446 (Moraxella osloensis strain NP7 plasmid pNP7-3, complete sequence) position: , mismatch: 5, identity: 0.833

gataatgataagaaaagcattat-actatat	CRISPR spacer
gataattataagaaaaccattatcacgatg-	Protospacer
****** ********* ****** ** **.

5. spacer 1.3|846939|30|NZ_CP040902|CRISPRCasFinder,CRT matches to NZ_CP018261 (Acinetobacter haemolyticus strain XH900 plasmid pXH901, complete sequence) position: , mismatch: 6, identity: 0.8

atttaaagttaactataattggttgactga	CRISPR spacer
atttaaagttaacaataattgatcctctaa	Protospacer
************* *******.*.  **.*

6. spacer 1.3|846939|30|NZ_CP040902|CRISPRCasFinder,CRT matches to NZ_CP018873 (Acinetobacter haemolyticus strain TJS01 plasmid pAHTJS2, complete sequence) position: , mismatch: 6, identity: 0.8

atttaaagttaactataattggttgactga	CRISPR spacer
atttaaagttaacaataattgatcctctaa	Protospacer
************* *******.*.  **.*

7. spacer 1.8|847269|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015111 (Acinetobacter sp. TGL-Y2 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

aaccctaaatcttgatcataatttcccgta	CRISPR spacer
atccgtaaatctttatcataatttcacatt	Protospacer
* ** ******** *********** *.*

8. spacer 1.22|848192|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to KT997855 (Uncultured Mediterranean phage uvDeep-CGR2-AD12-C183, complete genome) position: , mismatch: 6, identity: 0.8

tcggttttgaaataatctttcttgagtgtc	CRISPR spacer
tggtctttgaaataatctttcttgagagcg	Protospacer
* * .********************* *.

9. spacer 1.26|848456|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013579 (Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence) position: , mismatch: 6, identity: 0.8

taaacaattacaaaacaccttatgaattgt	CRISPR spacer
atcacaattaaaaaacaccttataaattga	Protospacer
   ******* ************.*****

10. spacer 1.26|848456|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013546 (Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence) position: , mismatch: 6, identity: 0.8

taaacaattacaaaacaccttatgaattgt	CRISPR spacer
atcacaattaaaaaacaccttataaattga	Protospacer
   ******* ************.*****

11. spacer 1.26|848456|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013573 (Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence) position: , mismatch: 6, identity: 0.8

taaacaattacaaaacaccttatgaattgt	CRISPR spacer
atcacaattaaaaaacaccttataaattga	Protospacer
   ******* ************.*****

12. spacer 1.26|848456|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to LR214961 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 7) position: , mismatch: 6, identity: 0.8

-taaacaattacaaaacaccttatgaattgt	CRISPR spacer
gtgaat-tttacaaaaaaccttatgacttgt	Protospacer
 *.**.  ******** ********* ****

13. spacer 1.5|847071|30|NZ_CP040902|CRISPRCasFinder,CRT matches to NC_031922 (Synechococcus phage S-CAM9 isolate 1109NB16, complete genome) position: , mismatch: 7, identity: 0.767

atcgagtgcgaatacgaatgtttctttgat	CRISPR spacer
aacccttgagaatacgaatatttctttgaa	Protospacer
* *   ** **********.*********

14. spacer 1.5|847071|30|NZ_CP040902|CRISPRCasFinder,CRT matches to KU686204 (Synechococcus phage S-CAM9 isolate 0808SB05, complete genome) position: , mismatch: 7, identity: 0.767

atcgagtgcgaatacgaatgtttctttgat	CRISPR spacer
aacccttgagaatacgaatatttctttgaa	Protospacer
* *   ** **********.*********

15. spacer 1.5|847071|30|NZ_CP040902|CRISPRCasFinder,CRT matches to KU686205 (Synechococcus phage S-CAM9 isolate 0908SB82, complete genome) position: , mismatch: 7, identity: 0.767

atcgagtgcgaatacgaatgtttctttgat	CRISPR spacer
aacccttgagaatacgaatatttctttgaa	Protospacer
* *   ** **********.*********

16. spacer 1.9|847335|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 7, identity: 0.767

cccgcttttatttataaataaaaggtctaa	CRISPR spacer
caaattattatttataaacaaaaggtataa	Protospacer
*  ..* ***********.******* ***

17. spacer 1.10|847401|30|NZ_CP040902|CRISPRCasFinder,CRT matches to NZ_CP045351 (Vibrio sp. THAF100 plasmid pTHAF100_a, complete sequence) position: , mismatch: 7, identity: 0.767

cccgcttttatttataaataaaaggtctaa	CRISPR spacer
caaattattatttataaacaaaaggtataa	Protospacer
*  ..* ***********.******* ***

18. spacer 1.12|847533|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024036 (Bacillus aryabhattai strain K13 plasmid unnamed1) position: , mismatch: 7, identity: 0.767

tattcttgattagaaaaagactaggtgtaa---	CRISPR spacer
aattcttcattagaaaaagact---cttaattt	Protospacer
 ****** **************   . ***

19. spacer 1.12|847533|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023318 (Bacillus megaterium strain A plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

tattcttgattagaaaaagactaggtgtaa---	CRISPR spacer
aattcttcattagaaaaagact---cttaattt	Protospacer
 ****** **************   . ***

20. spacer 1.18|847928|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NC_014031 (Bacillus megaterium QM B1551 plasmid pBM600, complete sequence) position: , mismatch: 7, identity: 0.767

aagaagaaactcaacaaagagaccctcaaa	CRISPR spacer
aagaagaaacacaacaaagagaattggaag	Protospacer
********** *********** ..  **.

21. spacer 1.18|847928|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041069 (Bacillus megaterium strain KNU-01 plasmid pKNU_01_5, complete sequence) position: , mismatch: 7, identity: 0.767

aagaagaaactcaacaaagagaccctcaaa	CRISPR spacer
aagaagaaacacaacaaagagaattggaag	Protospacer
********** *********** ..  **.

22. spacer 1.18|847928|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032531 (Bacillus megaterium NCT-2 plasmid pNCT2_3, complete sequence) position: , mismatch: 7, identity: 0.767

aagaagaaactcaacaaagagaccctcaaa	CRISPR spacer
aagaagaaacacaacaaagagaattggaag	Protospacer
********** *********** ..  **.

23. spacer 1.19|847994|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045341 (Vibrio sp. THAF190c plasmid pTHAF190c_c, complete sequence) position: , mismatch: 7, identity: 0.767

agttgtaccacagacaccaccacaagccct	CRISPR spacer
acctgtaccaccaacaccaccacaagttgt	Protospacer
* .******** .*************.. *

24. spacer 1.20|848060|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to KY224000 (Mycobacterium phage Rich, complete genome) position: , mismatch: 7, identity: 0.767

gacagcccgtcatcatctggaatgaccgca	CRISPR spacer
gcgagcccgtcatcacgtggaatgactcga	Protospacer
*  ************. *********.  *

25. spacer 1.21|848126|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to LC316979 (Lactococcus garvieae plasmid pNUF18 DNA, complete sequence, strain: NUF18) position: , mismatch: 7, identity: 0.767

tacaaaatcagaagtaacgacagttgaaac----	CRISPR spacer
tacaaaatcagaattaaccacag----aattttt	Protospacer
************* **** ****    **.

26. spacer 1.21|848126|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to LC316980 (Lactococcus garvieae plasmid pNUF462 DNA, complete sequence, strain: NUF462) position: , mismatch: 7, identity: 0.767

tacaaaatcagaagtaacgacagttgaaac----	CRISPR spacer
tacaaaatcagaattaaccacag----aattttt	Protospacer
************* **** ****    **.

27. spacer 1.21|848126|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to LC316981 (Lactococcus garvieae plasmid pNs15sousui29 DNA, complete sequence, strain: Ns15sousui29) position: , mismatch: 7, identity: 0.767

tacaaaatcagaagtaacgacagttgaaac----	CRISPR spacer
tacaaaatcagaattaaccacag----aattttt	Protospacer
************* **** ****    **.

28. spacer 1.21|848126|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to LC205736 (Lactococcus garvieae plasmid pBSLG13015 DNA, complete sequence, strain: BSLG13015) position: , mismatch: 7, identity: 0.767

tacaaaatcagaagtaacgacagttgaaac----	CRISPR spacer
tacaaaatcagaattaaccacag----aattttt	Protospacer
************* **** ****    **.

29. spacer 1.22|848192|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to MN693876 (Marine virus AFVG_250M699, complete genome) position: , mismatch: 7, identity: 0.767

tcggttttgaaataatctttcttgagtgtc	CRISPR spacer
ttgtctttaaaataatctttcttgagagcg	Protospacer
*.* .***.***************** *.

30. spacer 1.29|848654|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP037435 (Lactobacillus plantarum strain EM plasmid pEM6, complete sequence) position: , mismatch: 7, identity: 0.767

attagttgatagtggaaaaaaggatgatag	CRISPR spacer
ttgatatgatagttcaaaaaaggatgataa	Protospacer
 * *  *******  **************.

31. spacer 1.29|848654|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NC_011101 (Lactobacillus plantarum plasmid pLTK13, complete sequence) position: , mismatch: 7, identity: 0.767

attagttgatagtggaaaaaaggatgatag	CRISPR spacer
ttgatatgatagttcaaaaaaggatgataa	Protospacer
 * *  *******  **************.

32. spacer 1.29|848654|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018329 (Lactobacillus plantarum subsp. plantarum strain TS12 plasmid pLP12-5, complete sequence) position: , mismatch: 7, identity: 0.767

attagttgatagtggaaaaaaggatgatag	CRISPR spacer
ttgatatgatagttcaaaaaaggatgataa	Protospacer
 * *  *******  **************.

33. spacer 1.29|848654|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033889 (Lactobacillus plantarum strain LMT1-48 plasmid p_1, complete sequence) position: , mismatch: 7, identity: 0.767

attagttgatagtggaaaaaaggatgatag	CRISPR spacer
ttgatatgatagttcaaaaaaggatgataa	Protospacer
 * *  *******  **************.

34. spacer 1.29|848654|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028980 (Lactobacillus plantarum strain LQ80 plasmid pLQ803, complete sequence) position: , mismatch: 7, identity: 0.767

attagttgatagtggaaaaaaggatgatag	CRISPR spacer
ttgatatgatagttcaaaaaaggatgataa	Protospacer
 * *  *******  **************.

35. spacer 1.29|848654|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032755 (Lactobacillus plantarum subsp. argentoratensis strain DSM 16365 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.767

attagttgatagtggaaaaaaggatgatag	CRISPR spacer
ttgatatgatagttcaaaaaaggatgataa	Protospacer
 * *  *******  **************.

36. spacer 1.29|848654|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024414 (Lactobacillus plantarum strain ATCC 8014 plasmid pLP49, complete sequence) position: , mismatch: 7, identity: 0.767

attagttgatagtggaaaaaaggatgatag	CRISPR spacer
ttgatatgatagttcaaaaaaggatgataa	Protospacer
 * *  *******  **************.

37. spacer 1.29|848654|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017364 (Lactobacillus plantarum strain TMW 1.277 plasmid pL1277-1, complete sequence) position: , mismatch: 7, identity: 0.767

attagttgatagtggaaaaaaggatgatag	CRISPR spacer
ttgatatgatagttcaaaaaaggatgataa	Protospacer
 * *  *******  **************.

38. spacer 1.29|848654|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023307 (Lactobacillus plantarum strain LLY-606 plasmid p.LLY60601, complete sequence) position: , mismatch: 7, identity: 0.767

attagttgatagtggaaaaaaggatgatag	CRISPR spacer
ttgatatgatagttcaaaaaaggatgataa	Protospacer
 * *  *******  **************.

39. spacer 1.29|848654|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025413 (Lactobacillus plantarum strain X7021 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

attagttgatagtggaaaaaaggatgatag	CRISPR spacer
ttgatatgatagttcaaaaaaggatgataa	Protospacer
 * *  *******  **************.

40. spacer 1.29|848654|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028243 (Lactobacillus plantarum strain SRCM101518 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

attagttgatagtggaaaaaaggatgatag	CRISPR spacer
ttgatatgatagttcaaaaaaggatgataa	Protospacer
 * *  *******  **************.

41. spacer 1.31|848786|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012754 (Klebsiella pneumoniae strain KP617 plasmid KP-p1, complete sequence) position: , mismatch: 7, identity: 0.767

aattcaactatgtaatgatatattaaaaac	CRISPR spacer
aattcaactatgtaaaaatatatagattgc	Protospacer
*************** .****** .*  .*

42. spacer 1.31|848786|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP008933 (Klebsiella pneumoniae strain PMK1 plasmid pPMK1-NDM, complete sequence) position: , mismatch: 7, identity: 0.767

aattcaactatgtaatgatatattaaaaac	CRISPR spacer
aattcaactatgtaaaaatatatagattgc	Protospacer
*************** .****** .*  .*

43. spacer 1.31|848786|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022612 (Klebsiella pneumoniae strain CDC 0106 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

aattcaactatgtaatgatatattaaaaac	CRISPR spacer
aattcaactatgtaaaaatatatagattgc	Protospacer
*************** .****** .*  .*

44. spacer 1.31|848786|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NC_016980 (Klebsiella pneumoniae plasmid pNDM-MAR, complete sequence) position: , mismatch: 7, identity: 0.767

aattcaactatgtaatgatatattaaaaac	CRISPR spacer
aattcaactatgtaaaaatatatagattgc	Protospacer
*************** .****** .*  .*

45. spacer 1.31|848786|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020902 (Klebsiella pneumoniae strain K66-45 plasmid pK66-45-1, complete sequence) position: , mismatch: 7, identity: 0.767

aattcaactatgtaatgatatattaaaaac	CRISPR spacer
aattcaactatgtaaaaatatatagattgc	Protospacer
*************** .****** .*  .*

46. spacer 1.31|848786|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006799 (Klebsiella pneumoniae subsp. pneumoniae PittNDM01 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

aattcaactatgtaatgatatattaaaaac	CRISPR spacer
aattcaactatgtaaaaatatatagattgc	Protospacer
*************** .****** .*  .*

47. spacer 1.31|848786|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034406 (Klebsiella pneumoniae strain NH34 plasmid pNH34.1, complete sequence) position: , mismatch: 7, identity: 0.767

aattcaactatgtaatgatatattaaaaac	CRISPR spacer
aattcaactatgtaaaaatatatagattgc	Protospacer
*************** .****** .*  .*

48. spacer 1.31|848786|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020854 (Klebsiella pneumoniae strain KPN528 plasmid pKPN528-1, complete sequence) position: , mismatch: 7, identity: 0.767

aattcaactatgtaatgatatattaaaaac	CRISPR spacer
aattcaactatgtaaaaatatatagattgc	Protospacer
*************** .****** .*  .*

49. spacer 1.31|848786|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP036336 (Klebsiella pneumoniae strain BP327 plasmid pIncHIB, complete sequence) position: , mismatch: 7, identity: 0.767

aattcaactatgtaatgatatattaaaaac	CRISPR spacer
aattcaactatgtaaaaatatatagattgc	Protospacer
*************** .****** .*  .*

50. spacer 1.31|848786|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020068 (Klebsiella pneumoniae strain AR_0068 plasmid unitig_1, complete sequence) position: , mismatch: 7, identity: 0.767

aattcaactatgtaatgatatattaaaaac	CRISPR spacer
aattcaactatgtaaaaatatatagattgc	Protospacer
*************** .****** .*  .*

51. spacer 1.31|848786|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028929 (Klebsiella pneumoniae strain AR_0153 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

aattcaactatgtaatgatatattaaaaac	CRISPR spacer
aattcaactatgtaaaaatatatagattgc	Protospacer
*************** .****** .*  .*

52. spacer 1.31|848786|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016921 (Klebsiella pneumoniae isolate 11 plasmid pIncHI1B_DHQP1300920, complete sequence) position: , mismatch: 7, identity: 0.767

aattcaactatgtaatgatatattaaaaac	CRISPR spacer
aattcaactatgtaaaaatatatagattgc	Protospacer
*************** .****** .*  .*

53. spacer 1.31|848786|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to CP050156 (Klebsiella pneumoniae plasmid Carbapenemase(NDM-1)_IncH1B, complete sequence) position: , mismatch: 7, identity: 0.767

aattcaactatgtaatgatatattaaaaac	CRISPR spacer
aattcaactatgtaaaaatatatagattgc	Protospacer
*************** .****** .*  .*

54. spacer 1.31|848786|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018748 (Klebsiella pneumoniae strain KP33 plasmid pKP3301, complete sequence) position: , mismatch: 7, identity: 0.767

aattcaactatgtaatgatatattaaaaac	CRISPR spacer
aattcaactatgtaaaaatatatagattgc	Protospacer
*************** .****** .*  .*

55. spacer 1.31|848786|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to MK649825 (Klebsiella pneumoniae strain BA813 plasmid pBA813_1, complete sequence) position: , mismatch: 7, identity: 0.767

aattcaactatgtaatgatatattaaaaac	CRISPR spacer
aattcaactatgtaaaaatatatagattgc	Protospacer
*************** .****** .*  .*

56. spacer 1.31|848786|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to MN692993 (Marine virus AFVG_117M87, complete genome) position: , mismatch: 7, identity: 0.767

aattcaactatgtaatgatatattaaaaac	CRISPR spacer
gattagtataagtaatgatatattaaaaat	Protospacer
.*** .  ** ******************.

57. spacer 1.9|847335|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041427 (Escherichia coli strain STEC388 plasmid pSTEC388_2, complete sequence) position: , mismatch: 8, identity: 0.733

cccgcttttatttataaataaaaggtctaa	CRISPR spacer
attcctattatttataaattaaaggtcttt	Protospacer
 .. ** ************ ********

58. spacer 1.10|847401|30|NZ_CP040902|CRISPRCasFinder,CRT matches to NZ_CP041427 (Escherichia coli strain STEC388 plasmid pSTEC388_2, complete sequence) position: , mismatch: 8, identity: 0.733

cccgcttttatttataaataaaaggtctaa	CRISPR spacer
attcctattatttataaattaaaggtcttt	Protospacer
 .. ** ************ ********

59. spacer 1.15|847730|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047429 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-1, complete sequence) position: , mismatch: 8, identity: 0.733

tcgtacgtggtaatgatgatgaattctgta	CRISPR spacer
aagttcgtgttaatgatgatgaattattat	Protospacer
  ** **** *************** *

60. spacer 1.15|847730|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NC_047881 (Shigella phage SSP1, complete genome) position: , mismatch: 8, identity: 0.733

tcgtacgtggtaatgatgatgaattctgta	CRISPR spacer
gtgtacgtggtaatcatgatcaatttatga	Protospacer
 .************ ***** ****.   *

61. spacer 1.15|847730|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NC_015269 (Enterobacteria phage SPC35, complete genome) position: , mismatch: 8, identity: 0.733

tcgtacgtggtaatgatgatgaattctgta	CRISPR spacer
gtgtacgtggtaatcatgatcaatttatga	Protospacer
 .************ ***** ****.   *

62. spacer 1.16|847796|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP021882 (Sulfuriferula nivalis strain SGTM plasmid SGTM_pl1, complete sequence) position: , mismatch: 8, identity: 0.733

tttagttcaaatgaactcaggcatgtactt	CRISPR spacer
ccaacttcaaataaactcaggaatgtacca	Protospacer
.. * *******.******** ******.

63. spacer 1.18|847928|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to MN693189 (Marine virus AFVG_25M326, complete genome) position: , mismatch: 8, identity: 0.733

aagaagaaactcaacaaagagaccctcaaa	CRISPR spacer
aagtagaaactcaacaaagagttgatgcta	Protospacer
*** ***************** .  *   *

64. spacer 1.22|848192|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011009 (Bacillus simplex strain SH-B26 plasmid pSHB26, complete sequence) position: , mismatch: 8, identity: 0.733

tcggttttgaaataatctttcttgagtgtc	CRISPR spacer
ataggcttgaaataatatttcttcagtgtt	Protospacer
 ..* .********** ****** *****.

65. spacer 1.24|848324|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to MN694740 (Marine virus AFVG_250M752, complete genome) position: , mismatch: 8, identity: 0.733

gataatgataagaaaagcattatactatat	CRISPR spacer
attgccgataacaaacgcattatactataa	Protospacer
. *. .***** *** *************

66. spacer 2.2|2847156|36|NZ_CP040902|PILER-CR,CRISPRCasFinder,CRT matches to NC_015420 (Lactobacillus buchneri NRRL B-30929 plasmid pLBUC01, complete sequence) position: , mismatch: 8, identity: 0.778

ctaatttctttgattatttgttcatcgttttcttca	CRISPR spacer
aaattttttttgattatttgttcattgtttcattaa	Protospacer
  * ***.*****************.****. ** *

67. spacer 1.9|847335|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to MH412654 (Synechococcus phage S-T4, complete genome) position: , mismatch: 9, identity: 0.7

--cccgcttttatttataaataaaaggtctaa	CRISPR spacer
ttcctgtttttatttataaaaaaaagaggg--	Protospacer
  **.*.************* *****.

68. spacer 1.10|847401|30|NZ_CP040902|CRISPRCasFinder,CRT matches to MH412654 (Synechococcus phage S-T4, complete genome) position: , mismatch: 9, identity: 0.7

--cccgcttttatttataaataaaaggtctaa	CRISPR spacer
ttcctgtttttatttataaaaaaaagaggg--	Protospacer
  **.*.************* *****.

69. spacer 1.19|847994|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to MT635598 (Bacteroides phage Bacuni_F1, complete genome) position: , mismatch: 9, identity: 0.7

agttgtaccacagacaccaccacaagccct	CRISPR spacer
agctgtaccacacacaccaccacgtttaac	Protospacer
**.********* **********.  .  .

70. spacer 1.19|847994|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to MT806187 (Bacteroides phage F2, partial genome) position: , mismatch: 9, identity: 0.7

agttgtaccacagacaccaccacaagccct	CRISPR spacer
agctgtaccacacacaccaccacgtttaac	Protospacer
**.********* **********.  .  .

71. spacer 1.19|847994|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to MT806185 (Bacteroides phage F4, complete genome) position: , mismatch: 9, identity: 0.7

agttgtaccacagacaccaccacaagccct	CRISPR spacer
agctgtaccacacacaccaccacgtttaac	Protospacer
**.********* **********.  .  .

72. spacer 1.26|848456|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011513 (Paenibacillus peoriae strain HS311 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

taaacaattacaaaacaccttatgaattgt	CRISPR spacer
atgtagattacaaaacaccttatgcatggg	Protospacer
  .  .****************** ** *

73. spacer 1.31|848786|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to MT774389 (CrAssphage cr116_1, complete genome) position: , mismatch: 9, identity: 0.7

aattcaactatgtaatgatatattaaaaac	CRISPR spacer
gttaagactatgtaatgatagattaaagtg	Protospacer
. *  .************** ******.

74. spacer 1.21|848126|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to AP014715 (Edwardsiella phage PEi26 DNA, complete sequence) position: , mismatch: 10, identity: 0.667

tacaaaatcagaagtaacgacagttgaaac	CRISPR spacer
ccaaaaaccagaagtaacgacagtcacttt	Protospacer
.  ****.****************..   .

75. spacer 1.21|848126|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NC_028683 (Edwardsiella phage PEi20 DNA, complete sequence) position: , mismatch: 10, identity: 0.667

tacaaaatcagaagtaacgacagttgaaac	CRISPR spacer
ccaaaaaccagaagtaacgacagtcacttt	Protospacer
.  ****.****************..   .

76. spacer 2.9|2847634|39|NZ_CP040902|PILER-CR,CRISPRCasFinder,CRT matches to MN304819 (Phage 33_17, complete genome) position: , mismatch: 10, identity: 0.744

aaacgaggtatctctattccctcattttttaattcttct	CRISPR spacer
aatttctccttctctattcccccatttcttaattcttct	Protospacer
** .    . ***********.*****.***********

77. spacer 1.9|847335|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013040 (Clostridium perfringens strain JP838 plasmid pJFP838C, complete sequence) position: , mismatch: 11, identity: 0.633

--cccgcttttatttataaataaaaggtctaa	CRISPR spacer
aaatatattttattaataaataaaaggggg--	Protospacer
   .   ******* ************

78. spacer 1.9|847335|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013041 (Clostridium perfringens strain JP55 plasmid pJFP55F, complete sequence) position: , mismatch: 11, identity: 0.633

--cccgcttttatttataaataaaaggtctaa	CRISPR spacer
aaatatattttattaataaataaaaggggg--	Protospacer
   .   ******* ************

79. spacer 1.10|847401|30|NZ_CP040902|CRISPRCasFinder,CRT matches to NZ_CP013040 (Clostridium perfringens strain JP838 plasmid pJFP838C, complete sequence) position: , mismatch: 11, identity: 0.633

--cccgcttttatttataaataaaaggtctaa	CRISPR spacer
aaatatattttattaataaataaaaggggg--	Protospacer
   .   ******* ************

80. spacer 1.10|847401|30|NZ_CP040902|CRISPRCasFinder,CRT matches to NZ_CP013041 (Clostridium perfringens strain JP55 plasmid pJFP55F, complete sequence) position: , mismatch: 11, identity: 0.633

--cccgcttttatttataaataaaaggtctaa	CRISPR spacer
aaatatattttattaataaataaaaggggg--	Protospacer
   .   ******* ************

81. spacer 1.9|847335|30|NZ_CP040902|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053316 (Bacillus circulans strain GN03 plasmid unnamed, complete sequence) position: , mismatch: 12, identity: 0.6

--cccgcttttatttataaataaaaggtctaa	CRISPR spacer
ttagatcttttatttttaaataagaataat--	Protospacer
      ********* *******.*.   *

82. spacer 1.10|847401|30|NZ_CP040902|CRISPRCasFinder,CRT matches to NZ_CP053316 (Bacillus circulans strain GN03 plasmid unnamed, complete sequence) position: , mismatch: 12, identity: 0.6

--cccgcttttatttataaataaaaggtctaa	CRISPR spacer
ttagatcttttatttttaaataagaataat--	Protospacer
      ********* *******.*.   *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1290152 : 1310827

Clostridium_phage(25.0%)

capsid,terminase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_117574499.1\|1290152_1290419_+	hypothetical protein	K4K7R2	Streptococcus_phage	1.3e-13	44.3
WP_118744041.1\|1290490_1290958_+	hypothetical protein	NA	NA	NA	NA
WP_118744042.1\|1290959_1291430_+	hypothetical protein	NA	NA	NA	NA
WP_118721797.1\|1291422_1291761_+	hypothetical protein	F8UBK7	Clostridium_phage	3.3e-06	44.6
WP_118721796.1\|1291757_1292033_+	hypothetical protein	NA	NA	NA	NA
WP_158548228.1\|1292032_1292179_+	hypothetical protein	NA	NA	NA	NA
WP_117574504.1\|1292314_1292515_+	hypothetical protein	NA	NA	NA	NA
WP_117574505.1\|1292507_1292690_+	hypothetical protein	NA	NA	NA	NA
WP_118744043.1\|1292671_1293073_+	hypothetical protein	NA	NA	NA	NA
WP_117574507.1\|1293065_1293245_+	hypothetical protein	A0A1J0MGB9	Staphylococcus_phage	1.6e-07	55.2
WP_117574508.1\|1293245_1293635_+	hypothetical protein	A0A191KC44	Streptococcus_virus	3.8e-14	34.8
WP_117574509.1\|1293645_1293978_+	hypothetical protein	NA	NA	NA	NA
WP_118744045.1\|1293983_1294175_+	hypothetical protein	NA	NA	NA	NA
WP_118744046.1\|1294299_1294797_+	hypothetical protein	NA	NA	NA	NA
WP_168191641.1\|1295712_1296312_+	hypothetical protein	Q5YA77	Bacillus_phage	3.1e-15	27.7
WP_117574514.1\|1296295_1297675_+\|terminase	PBSX family phage terminase large subunit	A0A286QNX6	Streptococcus_phage	1.9e-28	25.4
WP_118748670.1\|1297719_1299156_+\|capsid	phage capsid protein	F6K8Q7	Clostridium_phage	8.1e-86	38.3
WP_118744007.1\|1299145_1300993_+	hypothetical protein	A0A2K9V3K1	Faecalibacterium_phage	4.0e-37	26.1
WP_158546467.1\|1300970_1301147_+	hypothetical protein	NA	NA	NA	NA
WP_168191642.1\|1301177_1301339_+	hypothetical protein	NA	NA	NA	NA
WP_158576624.1\|1301394_1301541_+	hypothetical protein	NA	NA	NA	NA
WP_118744008.1\|1301559_1301823_+	hypothetical protein	C1KFI4	Lactobacillus_virus	1.7e-26	65.5
WP_139939322.1\|1301827_1302304_+	DUF2829 domain-containing protein	H7BV51	unidentified_phage	2.7e-46	54.6
WP_118744010.1\|1302316_1302622_+	hypothetical protein	NA	NA	NA	NA
WP_117782128.1\|1302623_1302809_+	hypothetical protein	NA	NA	NA	NA
WP_118744011.1\|1302803_1303340_-	hypothetical protein	NA	NA	NA	NA
WP_117782130.1\|1303467_1303998_-	helix-turn-helix transcriptional regulator	Q0H244	Geobacillus_phage	2.3e-06	39.4
WP_168191603.1\|1304133_1304277_+	hypothetical protein	NA	NA	NA	NA
WP_118744012.1\|1304370_1304658_+	hypothetical protein	NA	NA	NA	NA
WP_118744013.1\|1304635_1305061_+	hypothetical protein	A0A059T7N7	Staphylococcus_phage	6.0e-29	51.8
WP_139939325.1\|1305042_1305291_+	hypothetical protein	NA	NA	NA	NA
WP_117782133.1\|1305370_1305589_+	hypothetical protein	NA	NA	NA	NA
WP_118744015.1\|1305734_1306337_+	hypothetical protein	L0P7B0	Lactobacillus_phage	6.5e-05	28.5
WP_118744016.1\|1306360_1307251_+\|capsid	capsid protein	X5J9Z5	Clostridium_phage	9.4e-109	63.7
WP_118744017.1\|1307267_1307579_+	hypothetical protein	A0A0A8WFD0	Clostridium_phage	9.8e-05	36.7
WP_118744018.1\|1307580_1307985_+	hypothetical protein	NA	NA	NA	NA
WP_118744019.1\|1307977_1308376_+	hypothetical protein	NA	NA	NA	NA
WP_168191643.1\|1308405_1308735_+	hypothetical protein	NA	NA	NA	NA
WP_118744021.1\|1308724_1309207_+	hypothetical protein	NA	NA	NA	NA
WP_118744022.1\|1309206_1309776_+	hypothetical protein	NA	NA	NA	NA
WP_118744023.1\|1309803_1310301_+	hypothetical protein	NA	NA	NA	NA
WP_118744024.1\|1310227_1310827_+	hypothetical protein	M1IEU4	Streptococcus_phage	6.1e-11	42.1

DBSCAN-SWA_2

1524082 : 1539991

Prochlorococcus_phage(18.18%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081918925.1\|1524082_1524427_-	type II toxin-antitoxin system PemK/MazF family toxin	Q332J9	Clostridium_botulinum_C_phage	1.4e-12	37.5
WP_022001468.1\|1524563_1525631_-	aminopeptidase P family protein	A0A0P0I8D7	Acinetobacter_phage	2.7e-09	31.7
WP_139939479.1\|1525623_1527375_-\|tRNA	aspartate--tRNA ligase	A0A1V0SIS0	Klosneuvirus	1.4e-23	25.5
WP_139939481.1\|1527367_1528651_-\|tRNA	histidine--tRNA ligase	A0A2I2L577	Orpheovirus	7.1e-17	24.8
WP_022001465.1\|1528964_1529222_-	hypothetical protein	NA	NA	NA	NA
WP_139939483.1\|1529221_1530601_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.0e-98	41.7
WP_139939485.1\|1530602_1534358_-	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	6.9e-28	27.7
WP_107029483.1\|1534369_1535623_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_022001461.1\|1535632_1537156_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	8.7e-62	43.6
WP_022001460.1\|1537156_1537750_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.0e-22	34.1
WP_022001459.1\|1537743_1538769_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	4.2e-68	43.5
WP_022001458.1\|1538784_1539489_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3FUQ7	Synechococcus_phage	4.0e-46	44.3
WP_117864350.1\|1539502_1539991_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.3e-22	45.6

DBSCAN-SWA_3

1972428 : 1979782

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_139939721.1\|1972428_1973667_-	PDZ domain-containing protein	A0A1B1IT49	uncultured_Mediterranean_phage	8.4e-15	25.0
WP_022002962.1\|1973682_1974936_-	GHKL domain-containing protein	W8CYF6	Bacillus_phage	2.0e-24	32.4
WP_139939723.1\|1974928_1975603_-	response regulator	W8CYM9	Bacillus_phage	1.3e-33	34.4
WP_022002964.1\|1975595_1976549_-	PhoH family protein	L7TP00	Rhizobium_phage	4.2e-46	48.5
WP_117574989.1\|1976545_1977454_-	sporulation protein YqfD	NA	NA	NA	NA
WP_022002966.1\|1977450_1977642_-	hypothetical protein	NA	NA	NA	NA
WP_022002967.1\|1977745_1978216_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_117346620.1\|1978229_1979096_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	9.1e-08	28.7
WP_117787126.1\|1979182_1979782_+	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	8.2e-32	39.2

DBSCAN-SWA_4

2125223 : 2132635

Streptococcus_phage(50.0%)

integrase

attL 2130572:2130600|attR 2132767:2132795

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000336323.1\|2125223_2125391_+	conjugal transfer protein	D0R0F6	Streptococcus_phage	1.6e-14	68.0
WP_001227347.1\|2125450_2125804_-	helix-turn-helix transcriptional regulator	A0A1S5SFA6	Streptococcus_phage	1.3e-58	100.0
WP_117792692.1\|2126308_2126728_+	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	5.5e-43	66.4
WP_044383637.1\|2126769_2126973_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_139939801.1\|2127241_2130541_-	DEAD/DEAH box helicase family protein	A0A097BY72	Enterococcus_phage	3.3e-18	26.4
WP_168191659.1\|2130534_2131614_-	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	2.6e-12	25.9
2130572:2130600	attL	NA	NA	NA	NA
WP_118662369.1\|2131639_2132635_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	5.9e-35	29.5
WP_118662369.1\|2131639_2132635_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	5.9e-35	29.5
2132767:2132795	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2305318 : 2371135

Planktothrix_phage(25.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_107030509.1\|2305318_2306430_-\|transposase	IS3 family transposase	A0A2I7SC85	Paenibacillus_phage	1.9e-74	53.7
WP_117832731.1\|2306515_2307649_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_022002108.1\|2308066_2308945_-	hypothetical protein	NA	NA	NA	NA
WP_139939935.1\|2313445_2313787_+	hypothetical protein	NA	NA	NA	NA
WP_139939937.1\|2314284_2317788_-	hypothetical protein	NA	NA	NA	NA
WP_139939939.1\|2317808_2318108_-	hypothetical protein	NA	NA	NA	NA
WP_107030148.1\|2318450_2319014_-\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	1.9e-22	37.3
WP_139939941.1\|2318902_2319706_-	hypothetical protein	NA	NA	NA	NA
WP_022001897.1\|2319892_2320144_-	hypothetical protein	NA	NA	NA	NA
WP_022001898.1\|2320140_2320773_-	rubredoxin	NA	NA	NA	NA
WP_022001899.1\|2320795_2322277_-	EAL domain-containing protein	NA	NA	NA	NA
WP_139939943.1\|2323670_2324996_-	sensor histidine kinase	W8CYF6	Bacillus_phage	1.7e-05	24.0
WP_107030145.1\|2325000_2325654_-	response regulator transcription factor	W8CYM9	Bacillus_phage	9.5e-26	33.5
WP_118347697.1\|2325751_2327128_-	ABC transporter permease	NA	NA	NA	NA
WP_117346429.1\|2327127_2327784_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.4e-22	33.0
WP_107030142.1\|2327793_2329071_-	ABC transporter permease	NA	NA	NA	NA
WP_139939945.1\|2330829_2331120_+\|transposase	transposase	NA	NA	NA	NA
WP_107030140.1\|2331044_2331401_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_107030139.1\|2331356_2331551_-	hypothetical protein	NA	NA	NA	NA
WP_168191666.1\|2331580_2331778_+	hypothetical protein	NA	NA	NA	NA
WP_022000839.1\|2331908_2332499_-	rubredoxin	NA	NA	NA	NA
WP_139939947.1\|2332654_2333515_-	DUF2179 domain-containing protein	NA	NA	NA	NA
WP_139939949.1\|2333502_2334399_-	AEC family transporter	NA	NA	NA	NA
WP_139939951.1\|2334400_2335516_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_139940510.1\|2335546_2336830_-	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_139939953.1\|2336842_2338249_-	6-phospho-beta-glucosidase	NA	NA	NA	NA
WP_117865149.1\|2338362_2339256_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_139939955.1\|2339429_2339876_-	hypothetical protein	NA	NA	NA	NA
WP_139939957.1\|2340008_2340608_-	thiamine diphosphokinase	NA	NA	NA	NA
WP_117783290.1\|2340604_2341255_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_139940512.1\|2341247_2342123_-	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA
WP_107030129.1\|2342124_2344026_-	Stk1 family PASTA domain-containing Ser/Thr kinase	G9BWE0	Planktothrix_phage	8.4e-22	32.5
WP_107030128.1\|2344029_2344761_-	Stp1/IreP family PP2C-type Ser/Thr phosphatase	R4ZGL0	Mythimna_separata_entomopoxvirus	2.1e-05	23.1
WP_139939959.1\|2347039_2349229_-	primosomal protein N'	NA	NA	NA	NA
WP_107030125.1\|2349310_2349874_-	guanylate kinase	S4W1R9	Pandoravirus	1.2e-11	31.9
WP_022001655.1\|2349974_2351615_+	fibronectin/fibrinogen-binding protein	M1H1U8	Paramecium_bursaria_Chlorella_virus	8.3e-10	38.5
WP_022001654.1\|2351632_2351911_-	hypothetical protein	NA	NA	NA	NA
WP_032089887.1\|2351980_2352727_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA
WP_118306547.1\|2352756_2353128_-	hypothetical protein	NA	NA	NA	NA
WP_139939961.1\|2353376_2354846_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA
WP_139939963.1\|2354915_2356331_-	peptidoglycan endopeptidase	A0A0K2SUC1	Clostridium_phage	6.0e-25	48.2
WP_117865162.1\|2356525_2357929_-	DUF5011 domain-containing protein	A0A090DCQ7	Clostridium_phage	8.1e-22	38.4
WP_139939965.1\|2358225_2361453_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_117481134.1\|2361455_2362160_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.1e-34	35.0
WP_032089881.1\|2362221_2362749_+	metallophosphoesterase	NA	NA	NA	NA
WP_139939967.1\|2362749_2364021_-	hypothetical protein	NA	NA	NA	NA
WP_139939969.1\|2364020_2364791_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	3.1e-31	35.1
WP_107030117.1\|2366096_2366519_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_139939971.1\|2366704_2367376_-\|tRNA	tRNA ligase	NA	NA	NA	NA
WP_139939973.1\|2367415_2368348_-	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	6.2e-87	56.8
WP_022002087.1\|2368463_2368823_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_022002088.1\|2368857_2369052_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_032089875.1\|2369070_2369628_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	5.8e-16	31.5
WP_052010840.1\|2369998_2371135_+\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	1.5e-31	37.6

Anti-CRISPR protein detection

Acr_ID: NZ_CP040902.1|WP_022001465.1|1528964_1529222_-|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP040902.1|WP_022001465.1|1528964_1529222_-|hypothetical-protein

1528964_1529222_-

85 aa aa

1524082-1539991

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP040902_1	TypeII	1.2\|847007\|28\|NZ_CP040902\|PILER-CR	847007-847034	28	1537365-1537392	0
NZ_CP040902_1	TypeII	1.4\|847005\|30\|NZ_CP040902\|CRISPRCasFinder,CRT	847005-847034	30	1537363-1537392	0

1. spacer 1.2|847007|28|NZ_CP040902|PILER-CR matches to NZ_CP040902 position: 1537365-1537392, mismatch: 0

acctttgcaccacgttgtaatacagctt	CRISPR spacer
acctttgcaccacgttgtaatacagctt	Protospacer
****************************

2. spacer 1.4|847005|30|NZ_CP040902|CRISPRCasFinder,CRT matches to NZ_CP040902 position: 1537363-1537392, mismatch: 0

aaacctttgcaccacgttgtaatacagctt	CRISPR spacer
aaacctttgcaccacgttgtaatacagctt	Protospacer
******************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040902

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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