CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP040920	Escherichia coli strain FC853_EC plasmid p853EC1, complete sequence	0 crisprs	NA	0	0	1
NZ_CP040923	Escherichia coli strain FC853_EC plasmid p853EC4, complete sequence	0 crisprs	NA	0	0	0
NZ_CP040919	Escherichia coli strain FC853_EC chromosome, complete genome	7 crisprs	csa3,PD-DExK,WYL,RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	2	31	13
NZ_CP040922	Escherichia coli strain FC853_EC plasmid p853EC3, complete sequence	0 crisprs	csa3	0	0	1
NZ_CP040921	Escherichia coli strain FC853_EC plasmid p853EC2, complete sequence	1 crisprs	NA	0	1	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 97119

104

Escherichia_phage(65.69%)

head,integrase,tail,portal,holin

attL 6072:6087|attR 72686:72701

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001198660.1\|524_1523_-	hypothetical protein	Q71TK3	Escherichia_phage	5.8e-192	97.3
WP_001276603.1\|1522_2887_-	replicative DNA helicase	O80281	Escherichia_phage	1.6e-253	99.8
WP_001410793.1\|2877_3093_+	hypothetical protein	NA	NA	NA	NA
WP_000751808.1\|3276_4104_-	hypothetical protein	A0A077SLJ6	Escherichia_phage	1.6e-131	100.0
WP_001180697.1\|4084_4321_-	hypothetical protein	A0A0A7NQ74	Enterobacteria_phage	2.1e-07	50.0
WP_032335105.1\|4513_4705_+	hypothetical protein	Q71T98	Escherichia_phage	3.9e-28	98.4
WP_024134673.1\|5093_5279_+	hypothetical protein	Q71T99	Escherichia_phage	1.5e-16	100.0
6072:6087	attL	NA	NA	NA	NA
WP_053890978.1\|6077_8342_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A077SL51	Escherichia_phage	0.0e+00	67.1
WP_000472529.1\|8338_9244_-	recombination-associated protein RdgC	A0A077SK17	Escherichia_phage	1.6e-159	99.7
WP_001177862.1\|9236_9521_-	hypothetical protein	Q71TA2	Escherichia_phage	2.5e-47	97.9
WP_001369296.1\|9794_9974_+	hypothetical protein	A0A1B0V758	Salmonella_phage	6.8e-27	98.3
WP_000007765.1\|10809_11232_+	hypothetical protein	Q71TL5	Escherichia_phage	5.0e-60	100.0
WP_001281115.1\|11407_11800_+	hypothetical protein	A0A077SLJ1	Escherichia_phage	7.6e-71	97.7
WP_001113742.1\|12135_13020_+	RepB family plasmid replication initiator protein	A0A077SLP3	Escherichia_phage	2.1e-161	100.0
WP_001154687.1\|13312_14122_+	GIY-YIG nuclease family protein	A0A077SK46	Escherichia_phage	7.1e-156	97.8
WP_001285362.1\|14290_15487_+	ParA family protein	A0A077SL49	Escherichia_phage	1.6e-225	100.0
WP_000067705.1\|16730_18437_+	hypothetical protein	Q1MVJ5	Enterobacteria_phage	2.4e-310	94.2
WP_140028048.1\|18497_20087_+	hypothetical protein	Q71TB2	Escherichia_phage	6.9e-304	99.1
WP_140028049.1\|20096_20912_+	hypothetical protein	A0A1B0V835	Salmonella_phage	2.2e-112	98.5
WP_000035302.1\|20947_21529_+	hypothetical protein	A0A077SL48	Escherichia_phage	4.5e-104	100.0
WP_000509939.1\|21540_22050_+	hypothetical protein	Q1MVJ9	Enterobacteria_phage	1.3e-91	100.0
WP_024199466.1\|22133_22430_+	hypothetical protein	Q71TM6	Escherichia_phage	9.5e-50	93.9
WP_001697749.1\|22596_23061_-	hypothetical protein	Q71TB7	Escherichia_phage	4.3e-89	98.7
WP_001697750.1\|23060_23765_-	DUF3800 domain-containing protein	Q71TB8	Escherichia_phage	8.7e-134	99.1
WP_062863745.1\|23933_24779_-	hypothetical protein	Q1MVK3	Enterobacteria_phage	3.2e-151	98.9
WP_001187875.1\|24808_25609_-	protein kilA	Q1MVK4	Enterobacteria_phage	1.9e-148	100.0
WP_140028050.1\|25773_26817_-	phage antirepressor Ant	Q71TN2	Escherichia_phage	1.7e-186	98.0
WP_072020142.1\|26813_27035_-	host cell division inhibitor Icd-like protein	A0A077SLM6	Escherichia_phage	8.1e-38	98.6
WP_000908460.1\|27615_27933_+	hypothetical protein	Q71TC5	Escherichia_phage	2.9e-28	100.0
WP_024166536.1\|27940_28720_+	hypothetical protein	Q71TC6	Escherichia_phage	9.3e-145	96.1
WP_032192785.1\|28967_29534_+	hypothetical protein	Q71TN7	Escherichia_phage	4.3e-99	98.9
WP_032192784.1\|29544_30156_+	hypothetical protein	Q71TN8	Escherichia_phage	2.7e-107	98.5
WP_000926346.1\|30170_31052_+	hypothetical protein	Q71TC9	Escherichia_phage	6.3e-174	99.7
WP_140028051.1\|31133_34859_+	transglycosylase SLT domain-containing protein	A0A1B0VDM8	Salmonella_phage	0.0e+00	86.0
WP_000002800.1\|34858_35215_+	hypothetical protein	Q71TP1	Escherichia_phage	1.0e-61	100.0
WP_000047920.1\|35211_36645_+	bleomycin hydrolase	Q71TP2	Escherichia_phage	6.3e-272	100.0
WP_001189832.1\|36644_37481_+	hypothetical protein	A0A1B0V7F2	Salmonella_phage	1.4e-154	100.0
WP_001286325.1\|37559_37994_+	hypothetical protein	A0A077SLL3	Escherichia_phage	7.4e-75	99.3
WP_033556184.1\|40794_41397_+\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	1.0e-98	89.5
WP_000782982.1\|41368_41788_-\|tail	tail assembly chaperone	M1SNQ2	Escherichia_phage	6.5e-36	65.8
WP_077688495.1\|41784_42153_-	hypothetical protein	F1BUP1	Erwinia_phage	4.3e-07	38.5
WP_001165547.1\|42224_42797_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	4.4e-83	85.0
WP_000145199.1\|43232_43496_+	hypothetical protein	Q71TD9	Escherichia_phage	1.1e-22	67.1
WP_000887652.1\|43570_43900_+\|holin	holin	Q37876	Escherichia_phage	1.3e-52	100.0
WP_000580776.1\|43896_44340_+	hypothetical protein	A0A077SK09	Escherichia_phage	1.3e-82	100.0
WP_001345482.1\|44326_44929_+	hypothetical protein	Q1MVM6	Enterobacteria_phage	5.4e-100	100.0
WP_068880417.1\|44930_46850_+	hypothetical protein	A0A1B0V7H1	Salmonella_phage	0.0e+00	98.3
WP_063612273.1\|46846_47212_+	hypothetical protein	Q1MVM8	Enterobacteria_phage	5.1e-45	98.3
WP_140028052.1\|47224_50212_+	hypothetical protein	A0A1B0VFX4	Salmonella_phage	0.0e+00	99.5
WP_001165936.1\|50201_50510_+	hypothetical protein	O21974	Escherichia_phage	5.4e-48	97.1
WP_000432105.1\|50539_51322_-	hypothetical protein	A0A1B0VDP8	Salmonella_phage	1.9e-145	100.0
WP_001376650.1\|51328_52006_-	DUF2829 domain-containing protein	A0A1B0VBT1	Salmonella_phage	1.2e-127	99.6
WP_000068865.1\|52203_52692_-	single-stranded DNA-binding protein	A0A1B0VAF5	Salmonella_phage	5.0e-88	100.0
WP_001345478.1\|52861_53419_+	lysozyme	Q71TF3	Escherichia_phage	4.2e-107	100.0
WP_106108351.1\|53554_53731_+\|holin	antiholin	Q71TR5	Escherichia_phage	1.9e-26	93.1
WP_000132943.1\|53710_54730_-\|head	head processing protein	Q1MVN5	Enterobacteria_phage	3.9e-183	100.0
WP_140028053.1\|54722_56432_-\|portal	phage portal protein	Q1MVN6	Enterobacteria_phage	0.0e+00	99.5
WP_140028054.1\|56507_63275_+	N-6 DNA methylase	Q1MVN7	Enterobacteria_phage	0.0e+00	98.8
WP_015974230.1\|63308_63749_+	hypothetical protein	Q71TR9	Escherichia_phage	4.5e-80	100.0
WP_000747846.1\|63745_63994_+	hypothetical protein	Q71TG0	Escherichia_phage	1.8e-41	100.0
WP_032190829.1\|64139_66086_+	site-specific DNA-methyltransferase	Q1MVP0	Enterobacteria_phage	0.0e+00	99.8
WP_015974229.1\|66088_69001_+	type III restriction-modification system endonuclease	Q71TG1	Escherichia_phage	0.0e+00	100.0
WP_024175651.1\|69076_69718_-	hypothetical protein	Q71TG2	Escherichia_phage	5.2e-117	100.0
WP_140028055.1\|69907_70474_-	recombinase	Q71TG3	Escherichia_phage	3.8e-95	95.6
WP_001697578.1\|70713_71025_-	hypothetical protein	Q5XLQ4	Enterobacteria_phage	1.6e-47	100.0
WP_105288829.1\|71075_72107_-\|integrase	tyrosine-type recombinase/integrase	Q71TG5	Escherichia_phage	1.9e-193	99.4
WP_000542336.1\|72114_72336_-	hypothetical protein	Q5QBN7	Enterobacteria_phage	4.5e-36	100.0
WP_001312283.1\|72747_72861_+	hypothetical protein	Q5XLQ7	Enterobacteria_phage	3.2e-14	100.0
72686:72701	attR	NA	NA	NA	NA
WP_012817944.1\|72879_72975_+	hypothetical protein	Q38402	Escherichia_phage	2.8e-11	100.0
WP_000874154.1\|72940_73150_+	hypothetical protein	Q5XLQ8	Enterobacteria_phage	4.8e-32	100.0
WP_000124155.1\|74135_75620_-	hypothetical protein	Q5QBP2	Enterobacteria_phage	2.5e-292	100.0
WP_001369802.1\|76898_77351_-	hypothetical protein	Q71T63	Escherichia_phage	1.1e-78	98.7
WP_000648825.1\|77439_78483_-	DUF968 domain-containing protein	A0A1B0VBU2	Salmonella_phage	3.9e-207	99.4
WP_000113019.1\|78510_78690_-	hypothetical protein	Q71TH5	Escherichia_phage	2.7e-23	98.3
WP_001216045.1\|78694_79075_-	type II toxin-antitoxin system death-on-curing family toxin	Q71T66	Escherichia_phage	1.9e-63	100.0
WP_001190712.1\|79074_79296_-	type II toxin-antitoxin system Phd/YefM family antitoxin	A0A222YXU1	Escherichia_phage	6.7e-32	100.0
WP_000506726.1\|79368_79758_-	DNA repair protein	Q1MVE7	Enterobacteria_phage	1.4e-69	99.2
WP_001377386.1\|79881_80133_-	DNA polymerase III subunit theta	Q71T70	Escherichia_phage	4.6e-37	94.0
WP_024134677.1\|80286_80484_-	hypothetical protein	Q71TI2	Escherichia_phage	7.5e-27	98.5
WP_001261544.1\|80794_81157_-	hypothetical protein	Q71TI4	Escherichia_phage	2.2e-56	100.0
WP_077780118.1\|81153_82086_-	hypothetical protein	A0A1B0VDS6	Salmonella_phage	2.6e-178	97.7
WP_001677496.1\|82447_82741_-	hypothetical protein	A0A077SK23	Escherichia_phage	9.1e-45	91.8
WP_000516537.1\|82919_83153_-	hypothetical protein	A0A1B0V7L5	Salmonella_phage	1.6e-36	97.4
WP_023356290.1\|83235_84120_-	DUF551 domain-containing protein	Q1MVF7	Enterobacteria_phage	6.9e-120	97.7
WP_122648061.1\|84196_84460_-	hypothetical protein	NA	NA	NA	NA
WP_000797279.1\|84633_84822_-	hypothetical protein	A0A1I9LJM4	Stx_converting_phage	1.4e-30	98.4
WP_033559672.1\|85167_85716_-	ead/Ea22-like family protein	A0A077SLK5	Escherichia_phage	1.3e-65	65.9
WP_000476202.1\|85712_85952_-	hypothetical protein	S5MQM0	Escherichia_phage	2.0e-34	92.4
WP_000158003.1\|85944_86148_-	hypothetical protein	A0A2R2Z313	Escherichia_phage	6.8e-31	94.0
WP_033559671.1\|86231_86960_-	hypothetical protein	Q71T76	Escherichia_phage	9.3e-139	98.3
WP_000021755.1\|87154_87661_-	hypothetical protein	A0A077SK53	Escherichia_phage	5.4e-93	98.8
WP_000107675.1\|87733_88996_-	hypothetical protein	A0A1B0V7L1	Salmonella_phage	7.8e-234	99.3
WP_000267620.1\|88997_89216_-	hypothetical protein	Q71TI9	Escherichia_phage	3.4e-36	100.0
WP_000684845.1\|89297_89999_-	hypothetical protein	Q1MVG6	Enterobacteria_phage	4.2e-144	100.0
WP_001354545.1\|89995_90673_-	calcineurin phosphoesterase	A0A077SLQ6	Escherichia_phage	7.6e-135	100.0
WP_000484112.1\|90669_91296_-	norphogenetic protein	A0A077SK52	Escherichia_phage	2.3e-122	99.0
WP_012817939.1\|91193_91856_-	hypothetical protein	Q71T83	Escherichia_phage	4.5e-124	100.0
WP_000095381.1\|91797_91953_-	hypothetical protein	Q71TJ4	Escherichia_phage	2.7e-19	96.1
WP_000943609.1\|92019_92598_-	norphogenetic protein	Q71T85	Escherichia_phage	1.5e-107	100.0
WP_000235786.1\|92992_93370_+	hypothetical protein	Q38620	Escherichia_phage	2.2e-67	100.0
WP_001141908.1\|93379_94597_+	hypothetical protein	A0A077SL53	Escherichia_phage	1.1e-224	100.0
WP_001615608.1\|94600_95329_+	hypothetical protein	Q71TJ9	Escherichia_phage	3.5e-138	99.6
WP_000602717.1\|95315_96101_+	hypothetical protein	Q71T90	Escherichia_phage	4.6e-144	99.6
WP_140028056.1\|96102_97119_+\|tail	phage tail tape measure protein	A0A077SLQ1	Escherichia_phage	1.7e-191	99.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP040919

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040919_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040919_1

984325-985575

Unclear

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACC	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

20 spacers

The CRISPR arrays of NZ_CP040919_1

>merge|NZ_CP040919|1|984325-985575|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCTCAGCGGCAAAAATACGATCTCGCCGGTGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAAACCGGCATCAGATATAAGCTGTTCTCTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGACTGACACAATCTCAACTTGCTGAATTAACAGTGTTCCCCGCGCCAGCGGGGATAAACCGAATGGCGCTGCCGATCGACAAATGGGACCTGGGTGTTCCCCGCGCCAGCGGGGATAAACCTATCGGGTTCCCTTTTAATGTGATTCCGAATTCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTTTAACTCCATTTATCAAAGCGCAATTAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGATAGCTGATAGCTCTCTCAATAATTAACGGATGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCAGCCAGCGCCCGGCGCGCCTCTTTAACCTGTGTTCCCCGCGCCAGCGGGGATAAACCGTCCTTAATTACAACGACACCACTGGAAAAATTGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCGCCAGGTGTTTTCTTTTCCCGGTCAGTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCTGGCATCAGATTTCTAAGGAATACGACAACGTGTTCCCCGCGCCAGCGGGGATAAACCGATTTAGCCCTATCTCAACGTTCAGGTGTTTTGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGGAGCCAGTGCTAACGATATCGCGGCCGCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGAAATGTGGCCACACCGTGTTAATGTATGGGTGTTCCCCGCGCCAGCGGGGATAAACCATTCCGGCTACTTTTGTTGCTCCCTGCTCATCCGTGTTCCCCGCGCCAGCGGGGATAAACCGAATATTTACTTGGATGCGTCGGACATTGAATCGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCCGGAGTCTTCCCGGTGTTCAGGTAGTTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTAGTTCAGGATGCATAATGAAATACCCGACCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCAACGAAAACGCAGAGCGAGGAACGGATATTGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGCAACATTTACCGCCGGTCAAAAACAGGACGTGTTCCCCGCGCCAGCGGGGATGAACCA

>NZ_CP040919|1|1|984325-985574|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCTCAGCGGCAAAAATACGATCTCGCCGGTGT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCAAACCGGCATCAGATATAAGCTGTTCTCTT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGACTGACACAATCTCAACTTGCTGAATTAACA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAATGGCGCTGCCGATCGACAAATGGGACCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACC	TATCGGGTTCCCTTTTAATGTGATTCCGAATTC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCTTTAACTCCATTTATCAAAGCGCAATTAGA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GATAGCTGATAGCTCTCTCAATAATTAACGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTCCTTAATTACAACGACACCACTGGAAAAATT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTCGCCAGGTGTTTTCTTTTCCCGGTCAGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGGCTGGCATCAGATTTCTAAGGAATACGACAAC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GATTTAGCCCTATCTCAACGTTCAGGTGTTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCGGGAGCCAGTGCTAACGATATCGCGGCCGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTGAAATGTGGCCACACCGTGTTAATGTATGG
GTGTTCCCCGCGCCAGCGGGGATAAACC	ATTCCGGCTACTTTTGTTGCTCCCTGCTCATCC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAATATTTACTTGGATGCGTCGGACATTGAATC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGTCCGGAGTCTTCCCGGTGTTCAGGTAGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTAGTTCAGGATGCATAATGAAATACCCGACC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTCAACGAAAACGCAGAGCGAGGAACGGATATT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCAGGCAACATTTACCGCCGGTCAAAAACAGGAC
GTGTTCCCCGCGCCAGCGGGGATGAACC

>NZ_CP040919|1|1|984325-985575|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCAGCGGCAAAAATACGATCTCGCCGGTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAAACCGGCATCAGATATAAGCTGTTCTCTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTGACACAATCTCAACTTGCTGAATTAACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATGGCGCTGCCGATCGACAAATGGGACCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCT	ATCGGGTTCCCTTTTAATGTGATTCCGAATTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTTTAACTCCATTTATCAAAGCGCAATTAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATAGCTGATAGCTCTCTCAATAATTAACGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCTTAATTACAACGACACCACTGGAAAAATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCGCCAGGTGTTTTCTTTTCCCGGTCAGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTGGCATCAGATTTCTAAGGAATACGACAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTAGCCCTATCTCAACGTTCAGGTGTTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGAGCCAGTGCTAACGATATCGCGGCCGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGAAATGTGGCCACACCGTGTTAATGTATGG
GTGTTCCCCGCGCCAGCGGGGATAAACCA	TTCCGGCTACTTTTGTTGCTCCCTGCTCATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATATTTACTTGGATGCGTCGGACATTGAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCCGGAGTCTTCCCGGTGTTCAGGTAGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAGTTCAGGATGCATAATGAAATACCCGACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAACGAAAACGCAGAGCGAGGAACGGATATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGCAACATTTACCGCCGGTCAAAAACAGGAC
GTGTTCCCCGCGCCAGCGGGGATGAACCA

>NZ_CP040919|1|1|984325-985575|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCAGCGGCAAAAATACGATCTCGCCGGTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAAACCGGCATCAGATATAAGCTGTTCTCTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTGACACAATCTCAACTTGCTGAATTAACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATGGCGCTGCCGATCGACAAATGGGACCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCT	ATCGGGTTCCCTTTTAATGTGATTCCGAATTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTTTAACTCCATTTATCAAAGCGCAATTAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATAGCTGATAGCTCTCTCAATAATTAACGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCTTAATTACAACGACACCACTGGAAAAATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCGCCAGGTGTTTTCTTTTCCCGGTCAGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTGGCATCAGATTTCTAAGGAATACGACAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTAGCCCTATCTCAACGTTCAGGTGTTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGAGCCAGTGCTAACGATATCGCGGCCGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGAAATGTGGCCACACCGTGTTAATGTATGG
GTGTTCCCCGCGCCAGCGGGGATAAACCA	TTCCGGCTACTTTTGTTGCTCCCTGCTCATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATATTTACTTGGATGCGTCGGACATTGAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCCGGAGTCTTCCCGGTGTTCAGGTAGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAGTTCAGGATGCATAATGAAATACCCGACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAACGAAAACGCAGAGCGAGGAACGGATATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGCAACATTTACCGCCGGTCAAAAACAGGAC
GTGTTCCCCGCGCCAGCGGGGATGAACCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040919.1\|WP_000109537.1\|995406_995667_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP040919.1\|WP_012311769.1\|991716_993054_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP040919.1\|WP_022646044.1\|993031_993811_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP040919.1\|WP_022646048.1\|982147_983020_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP040919.1\|WP_000021342.1\|989313_990099_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP040919.1\|WP_000046818.1\|973730_975032_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP040919.1\|WP_000254750.1\|977639_977975_+\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP040919.1\|WP_000210878.1\|979065_980703_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP040919.1\|WP_001130256.1\|994814_995390_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP040919.1\|WP_022646046.1\|986212_987691_-\|kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP040919.1\|WP_022646042.1\|995657_996929_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP040919.1\|WP_023908985.1\|993807_994668_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP040919.1\|WP_000186450.1\|970917_973674_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP040919.1\|WP_001071641.1\|978046_978838_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP040919.1\|WP_000581937.1\|977391_977640_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP040919.1\|WP_000226815.1\|975079_977314_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP040919.1\|WP_001199973.1\|983313_983985_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP040919.1\|WP_022646045.1\|990168_991623_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP040919.1\|WP_000036723.1\|980789_982088_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP040919.1\|WP_001164562.1\|987717_988995_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949

Protein	Function_ID	Function_description	E-value
NZ_CP040919.1\|WP_000109537.1\|995406_995667_-\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	3.07968e-40
NZ_CP040919.1\|WP_012311769.1\|991716_993054_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.88688e-50
NZ_CP040919.1\|WP_022646044.1\|993031_993811_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	4.70543e-60
NZ_CP040919.1\|WP_022646048.1\|982147_983020_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	2.57168e-95
NZ_CP040919.1\|WP_000021342.1\|989313_990099_+\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	8.62537e-140
NZ_CP040919.1\|WP_000046818.1\|973730_975032_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP040919.1\|WP_000254750.1\|977639_977975_+\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.22533e-74
NZ_CP040919.1\|WP_000210878.1\|979065_980703_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP040919.1\|WP_001130256.1\|994814_995390_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	1.33799e-87
NZ_CP040919.1\|WP_022646046.1\|986212_987691_-\|kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	8.58462e-109
NZ_CP040919.1\|WP_022646042.1\|995657_996929_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	3.94463e-124
NZ_CP040919.1\|WP_023908985.1\|993807_994668_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	2.43837e-88
NZ_CP040919.1\|WP_000186450.1\|970917_973674_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP040919.1\|WP_001071641.1\|978046_978838_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	6.52379e-160
NZ_CP040919.1\|WP_000581937.1\|977391_977640_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP040919.1\|WP_000226815.1\|975079_977314_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP040919.1\|WP_001199973.1\|983313_983985_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
NZ_CP040919.1\|WP_022646045.1\|990168_991623_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	2.79726e-81
NZ_CP040919.1\|WP_000036723.1\|980789_982088_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP040919.1\|WP_001164562.1\|987717_988995_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.87501e-29

>NZ_CP040919.1|WP_001199973.1|983313_983985_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP040919.1|WP_022646048.1|982147_983020_-|YgcG-family-protein
MRYFILIFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTRKLESIFNNTQVQIAVLIIPTTKDETIEQYATRVFNNWRLGDAKRNDGILIIVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAKGLELAIIALNNQLTSQHQYSANPSESESASSSDYYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSSVCISAIYLLDLFLFSDKTFSIAVFFFFFTFTTIMVFTCLCVLQKKASGRSYHSDNSGSGGGSSGGGFSGGGGSSGGGGASGRW
>NZ_CP040919.1|WP_000036723.1|980789_982088_+|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP040919.1|WP_000210878.1|979065_980703_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP040919.1|WP_001071641.1|978046_978838_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEAQQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP040919.1|WP_000254750.1|977639_977975_+|endoribonuclease-MazF
MVSRYVPDTGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP040919.1|WP_000581937.1|977391_977640_+|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP040919.1|WP_000226815.1|975079_977314_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP040919.1|WP_000046818.1|973730_975032_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLECFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLHNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>NZ_CP040919.1|WP_000186450.1|970917_973674_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG
>NZ_CP040919.1|WP_022646046.1|986212_987691_-|kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKTWAWSEDAAVMEKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFMPVESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNEDSIQSWSNA
>NZ_CP040919.1|WP_001164562.1|987717_988995_-|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSIIGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALAMVIIFTFLLFQKIRTADSAPAMASSK
>NZ_CP040919.1|WP_000021342.1|989313_990099_+|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANVFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>NZ_CP040919.1|WP_022646045.1|990168_991623_+|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDVEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNHLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWTLLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP040919.1|WP_012311769.1|991716_993054_+|MFS-transporter
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYLGPHVLLGDEVAAATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQATLLLLAAVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP040919.1|WP_022646044.1|993031_993811_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGNIGPDVSLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEDAVLLETVADLRFAPEFVARHIAEWQRQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFITLEQRTENGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAAIIRKTVAVELPAMQCLHLARAEQRRGATLIDGQTVAEKAQKLWQNYLRQRMQP
>NZ_CP040919.1|WP_023908985.1|993807_994668_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTDKRPLCLSLARQAGADKNATLPSGMQQLNIVPGALPDWLVSLENLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVCNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEAMVTNIHADCQ
>NZ_CP040919.1|WP_001130256.1|994814_995390_-|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISHIVKKIKSAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP040919.1|WP_000109537.1|995406_995667_-|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTVQWLINACPAGLFSLTPEGDLRIDYRSCLECGTCRLLCDEKTLQQWRYPPSGFGITYRFG
>NZ_CP040919.1|WP_022646042.1|995657_996929_-|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTQALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRACYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLARFKTHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLLGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFALYHHNVERSLLWDVLQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPPLRQLFWRHLRRHGLWHLAGDVIRSLRCL

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Crispr_ID: NZ_CP040919_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040919_2

1011122-1011943

TypeI-E

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCCAGCGGGGATAAACC	PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

13 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP040919_2

>merge|NZ_CP040919|2|1011122-1011943|PILER-CR,CRISPRCasFinder,CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCGCAAACGTCAGGCGGAAGTGTTCCGGTCATATAGAGTTCCCCGCGCCAGCGGGGATAAACCGGACCAGTCGGGCCAGACATCGGGGACGCAGAAGAGTTCCCCGCGCCAGCGGGGATAAACCGCCGACCGCCATCGCGCATTTCGTCGAACGTCGGAGTTCCCCGCGCCAGCGGGGATAAACCGCAAAAAATAATATCCGGCAGTCTGTACGGTAGAGTTCCCCGCGCCAGCGGGGATAAACCGCAACATTTTCCAATATCACCCAGCAATCAATTGAGTTCCCCGCGCCAGCGGGGATAAACCGTCATGAAGGCTTCGATTATTTCTTGATACCTGGAGTTCCCCGCGCCAGCGGGGATAAACCGATTTCATTAATTTTGCAGAGAAGTGTCTCGAAGAGTTCCCCGCGCCAGCGGGGATAAACCGCAATAACACCGGCATTTGTCCACGACAATATTGAGTTCCCCGCGCCAGCGGGGATAAACCAGCGTAAGAAAACAATTTTTTCAGAAAACTAACGAGTTCCCCGCGCCAGCGGGGATAAACCGTACAGTTTCCATAAATTCACCTCGTTTATATAGAGTTCCCCGCGCCAGCGGGGATAAACCGTTTATAGCGCCAAAATTGACGAAAGACATGTTGAGTTCCCCGCGCCAGCGGGGATAAACCGGGAAATTAGGCAAATGTGAACACGGCGGCCCCGAGTTCCCCGCGCCAGCGGGGATAAACCGCCATAACCACCCCCATCATGAATATTTTCCGGCGAGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP040919|2|2|1011122-1011942|PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACC	GCAAACGTCAGGCGGAAGTGTTCCGGTCATATA
GAGTTCCCCGCGCCAGCGGGGATAAACC	GGACCAGTCGGGCCAGACATCGGGGACGCAGAA
GAGTTCCCCGCGCCAGCGGGGATAAACC	GCCGACCGCCATCGCGCATTTCGTCGAACGTCG
GAGTTCCCCGCGCCAGCGGGGATAAACC	GCAAAAAATAATATCCGGCAGTCTGTACGGTA
GAGTTCCCCGCGCCAGCGGGGATAAACC	GCAACATTTTCCAATATCACCCAGCAATCAATT
GAGTTCCCCGCGCCAGCGGGGATAAACC	GTCATGAAGGCTTCGATTATTTCTTGATACCTG
GAGTTCCCCGCGCCAGCGGGGATAAACC	GATTTCATTAATTTTGCAGAGAAGTGTCTCGAA
GAGTTCCCCGCGCCAGCGGGGATAAACC	GCAATAACACCGGCATTTGTCCACGACAATATT
GAGTTCCCCGCGCCAGCGGGGATAAACC	AGCGTAAGAAAACAATTTTTTCAGAAAACTAAC
GAGTTCCCCGCGCCAGCGGGGATAAACC	GTACAGTTTCCATAAATTCACCTCGTTTATATA
GAGTTCCCCGCGCCAGCGGGGATAAACC	GTTTATAGCGCCAAAATTGACGAAAGACATGTT
GAGTTCCCCGCGCCAGCGGGGATAAACC	GGGAAATTAGGCAAATGTGAACACGGCGGCCCC
GAGTTCCCCGCGCCAGCGGGGATAAACC	GCCATAACCACCCCCATCATGAATATTTTCCGGC
GAGTTCCCCGCGCCAGCGGGGATAAACC

>NZ_CP040919|2|2|1011122-1011943|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAAACGTCAGGCGGAAGTGTTCCGGTCATATA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACCAGTCGGGCCAGACATCGGGGACGCAGAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCGACCGCCATCGCGCATTTCGTCGAACGTCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAAATAATATCCGGCAGTCTGTACGGTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAACATTTTCCAATATCACCCAGCAATCAATT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCATGAAGGCTTCGATTATTTCTTGATACCTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTCATTAATTTTGCAGAGAAGTGTCTCGAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAACACCGGCATTTGTCCACGACAATATT
GAGTTCCCCGCGCCAGCGGGGATAAACCA	GCGTAAGAAAACAATTTTTTCAGAAAACTAAC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TACAGTTTCCATAAATTCACCTCGTTTATATA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTATAGCGCCAAAATTGACGAAAGACATGTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGAAATTAGGCAAATGTGAACACGGCGGCCCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCATAACCACCCCCATCATGAATATTTTCCGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP040919|2|2|1011122-1011943|CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAAACGTCAGGCGGAAGTGTTCCGGTCATATA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACCAGTCGGGCCAGACATCGGGGACGCAGAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCGACCGCCATCGCGCATTTCGTCGAACGTCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAAATAATATCCGGCAGTCTGTACGGTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAACATTTTCCAATATCACCCAGCAATCAATT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCATGAAGGCTTCGATTATTTCTTGATACCTG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTCATTAATTTTGCAGAGAAGTGTCTCGAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAACACCGGCATTTGTCCACGACAATATT
GAGTTCCCCGCGCCAGCGGGGATAAACCA	GCGTAAGAAAACAATTTTTTCAGAAAACTAAC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TACAGTTTCCATAAATTCACCTCGTTTATATA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTTATAGCGCCAAAATTGACGAAAGACATGTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGAAATTAGGCAAATGTGAACACGGCGGCCCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCATAACCACCCCCATCATGAATATTTTCCGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040919.1\|WP_022646037.1\|1007442_1008534_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP040919.1\|WP_000752798.1\|1006947_1007430_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|187801
NZ_CP040919.1\|WP_000281399.1\|1009197_1009797_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP040919.1\|WP_022646033.1\|1012024_1013062_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP040919.1\|WP_000517476.1\|1016822_1017134_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP040919.1\|WP_022646036.1\|1008536_1009211_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
NZ_CP040919.1\|WP_022646038.1\|1005446_1006955_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|236613
NZ_CP040919.1\|WP_001295182.1\|1019368_1020130_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP040919.1\|WP_022646034.1\|1010731_1011016_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP040919.1\|WP_140027995.1\|1009812_1010730_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP040919.1\|WP_000372392.1\|1013313_1014222_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP040919.1\|WP_022646032.1\|1014223_1015651_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP040919.1\|WP_022646031.1\|1018338_1019388_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP040919.1\|WP_001246104.1\|1016305_1016629_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP040919.1\|WP_001290706.1\|999486_1001199_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP040919.1\|WP_022646039.1\|1002365_1005032_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP040919.1\|WP_022646040.1\|1001272_1002007_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP040919.1\|WP_001173673.1\|1015650_1016256_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP040919.1\|WP_001219242.1\|1017862_1018342_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP040919.1\|WP_000246131.1\|1017152_1017863_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670

Protein	Function_ID	Function_description	E-value
NZ_CP040919.1\|WP_022646037.1\|1007442_1008534_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	7.42279e-152
NZ_CP040919.1\|WP_000752798.1\|1006947_1007430_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187801	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.51297e-33
NZ_CP040919.1\|WP_000281399.1\|1009197_1009797_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	4.3792e-101
NZ_CP040919.1\|WP_022646033.1\|1012024_1013062_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP040919.1\|WP_000517476.1\|1016822_1017134_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP040919.1\|WP_022646036.1\|1008536_1009211_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	8.37717e-102
NZ_CP040919.1\|WP_022646038.1\|1005446_1006955_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|236613	PRK09693, PRK09693, Cascade antiviral complex protein; Validated.	0
NZ_CP040919.1\|WP_001295182.1\|1019368_1020130_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP040919.1\|WP_022646034.1\|1010731_1011016_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.20986e-62
NZ_CP040919.1\|WP_140027995.1\|1009812_1010730_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	9.52952e-159
NZ_CP040919.1\|WP_000372392.1\|1013313_1014222_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP040919.1\|WP_022646032.1\|1014223_1015651_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP040919.1\|WP_022646031.1\|1018338_1019388_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP040919.1\|WP_001246104.1\|1016305_1016629_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP040919.1\|WP_001290706.1\|999486_1001199_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP040919.1\|WP_022646039.1\|1002365_1005032_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	0
NZ_CP040919.1\|WP_022646040.1\|1001272_1002007_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.62447e-137
NZ_CP040919.1\|WP_001173673.1\|1015650_1016256_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP040919.1\|WP_001219242.1\|1017862_1018342_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP040919.1\|WP_000246131.1\|1017152_1017863_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.32778e-121

>NZ_CP040919.1|WP_022646034.1|1010731_1011016_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLAIWLLEVRAGVYVGDVSARIREMIWEQISGLAEEGNVVMAWATNTESGFEFQTFGVNRRTPVDLDGLRLVSFLPV
>NZ_CP040919.1|WP_140027995.1|1009812_1010730_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGRPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYVLLAKQYGVKWNGRRYDPKDWEKGDTVNQCISAATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS
>NZ_CP040919.1|WP_000281399.1|1009197_1009797_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSKVIIARAWSRDLYQLHQGLWHLFPNRPDAARDFLFHVEKRNTPEGCHVLLQSAQMPVSTAVATVIKTKQVEFQLQVGVPLYFRLRANPIKTILDNQKRLDSKGNIKRCRVPLIKEAEQIAWLQRKLGNAARVEDVHPISERPQYFSGDGKSGKIQTVCFEGVITINDAPALIDLVQQGIGPAKSMGCGLLSLAPL
>NZ_CP040919.1|WP_022646036.1|1008536_1009211_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MRSYLILRLAGPMQAWGQPTFEGTRPTGRFPTRSGLLGLLGACLGIQRDDTSSLQALSESVQFAVRCDELILDDRRVSVTGLRDYHTVLGAREDYRGLKSHETIQTWREYLCDASFTVALWLTPHATMVISELEKAVLKPRYTPYLGRRSCPLTHPLFLGTCKASDPQKALLNYEPVGGDIYSEESVTGHYLKFTARDEPMITLPRQFASREWYVIKGGMDVSQ
>NZ_CP040919.1|WP_022646037.1|1007442_1008534_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSNFINIHVLISHSPSCLNRDDMNMQKDAIFGGKRRVRISSQSLKRAMRKSDYYAQNIGESSLRTIHLAQLRDVLRQKLGERFDQKIIDKTLALLSGKLVDEAEKISADAVTPWVVGEIAWFCEQVAKAEADNLDDKKLLKVLKEDIAAIRVNLQQGVDIALSGRMATSGMMSELGKVDGAMSIAHAITTHQVDSDIDWFTAVDDLQEQGSAHLGTQEFSSGVFYRYANINLAQLQENLGGASREQALEIATHVVHMLATEVPGAKQRTYAAFNPADMVMVNFSDMPLSMANAFEKAVKAKDGFLQPSIQAFNQYWDRVANGYGLNGAAAQFSLSDVDPITAQVKQMPTLEQLKSWVRNNGEA
>NZ_CP040919.1|WP_000752798.1|1006947_1007430_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MADEIDAMALYRAWQQLDNGACAQIRRVSEPDELRDIPAFYRLVQPFGWENPRHQQALLRMVFCLSAGKNVIRHQDKKPEQTTGISLGRALANSGRINERRIFQLIRADRTADMVQLRRLLTHAEPVLDWPLMARMLTWWGKRERQQLLEDFVLTTNKNA
>NZ_CP040919.1|WP_022646038.1|1005446_1006955_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNLLIDNWIPVRPRNGGEVQIINLQSLYCSRDQWRLSLPRDDMELAALALLVCIGQIIAPAKDDVEFRHRIMNPLTEDEFQQLIAPWIDMFYLNHAEHPFMQTKGVKANDVTPMEKLLAGVSGATNCAFVNQPGQGEALCGGCTAIALFNQANQAPGFGGGFKSGLRGGTPITTFVCGIDLRSTVLLNVLTIPRLQKQFPNELHTENQPTWVKPVKPNESVPASSIGFVRGLFWQPAHIELCDPIGIGKCSCCGQESNLRYTGFLKEKFTFTVNGLWPHPHSPCLVTVKKGEVEEKFLAFTTSAPSWTQISRVVVDKIIQNENGNRVAAVVNQFRNIAPQSPLELIMGGYRNNQASILERRHDVLMFNQGWQQYGNVINEIVTVGLGYKTALRKALYTFAEGFKNKDFKGAGVSVHETAERHFYRQSELLIPDVLANINFSQADEVIADLRDKLHQLCEMLFNQSEAPYAHHPKLISTLALARATLYKHLRELKPQGGPSNG
>NZ_CP040919.1|WP_022646039.1|1002365_1005032_+|CRISPR-associated-helicase/endonuclease-Cas3
MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWEQSVVLQNAFCQNEMLSKQMVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSPGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFKEDAPSNINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPAAPGLTVIEAPTGSGKTETALAYAWKLIDQQLADSVIFALPTQATANAMLSRMEANASRLFTSPNLILAHGNSRFNHLFQSIKSRAFTEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPEENNSAYPLINWRGVNGAQRFDLLAHSEQLPPRFSIRPEPIYLADMLPDLRMLERMIVAANAGAQVCLICNLVDVAQLCHQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEVPLASVLLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVIKGMDKYESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYLQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRNFSEVVDEDGVLWLEGKQNQDGWIWQGNNIVITYTRDEGMTRVIPANPK
>NZ_CP040919.1|WP_022646040.1|1001272_1002007_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWNNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP040919.1|WP_001290706.1|999486_1001199_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
>NZ_CP040919.1|WP_022646033.1|1012024_1013062_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEVFDKAGIAVLSVEATNWNLGNKDGYQQRSKTPAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIILPLVKKLAKAS
>NZ_CP040919.1|WP_000372392.1|1013313_1014222_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP040919.1|WP_022646032.1|1014223_1015651_+|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLILIDRLSNVTVGAGMVHEPVSQATAAPSQFSVFELELNALVRRHFPHWGARDLLGDK
>NZ_CP040919.1|WP_001173673.1|1015650_1016256_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP040919.1|WP_001246104.1|1016305_1016629_+|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP040919.1|WP_000517476.1|1016822_1017134_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP040919.1|WP_000246131.1|1017152_1017863_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKHVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP040919.1|WP_001219242.1|1017862_1018342_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP040919.1|WP_022646031.1|1018338_1019388_+|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHSREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELVELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP040919.1|WP_001295182.1|1019368_1020130_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Crispr_ID: NZ_CP040919_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040919_3

2270797-2270920

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040919_3

>merge|NZ_CP040919|3|2270797-2270920|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP040919|3|3|2270797-2270920|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040919.1\|WP_001182363.1\|2276237_2277449_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP040919.1\|WP_000701040.1\|2280069_2281239_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP040919.1\|WP_001070227.1\|2262883_2263510_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
NZ_CP040919.1\|WP_000587589.1\|2267801_2268614_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_CP040919.1\|WP_022645745.1\|2268625_2270230_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP040919.1\|WP_000528342.1\|2262218_2262428_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_CP040919.1\|WP_072224394.1\|2265636_2266284_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
NZ_CP040919.1\|WP_022645749.1\|2263530_2265633_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
NZ_CP040919.1\|WP_022645747.1\|2266347_2267016_+\|4Fe-4S-ferredoxin-type-protein	unknown	unknown	gnl\|CDD\|274451
NZ_CP040919.1\|WP_000269493.1\|2277561_2278494_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP040919.1\|WP_000190982.1\|2278490_2279516_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP040919.1\|WP_000101179.1\|2282093_2282921_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|366353
NZ_CP040919.1\|WP_001295403.1\|2260249_2261662_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
NZ_CP040919.1\|WP_022645746.1\|2267012_2267798_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
NZ_CP040919.1\|WP_000007283.1\|2281384_2281966_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP040919.1\|WP_000098896.1\|2274799_2275948_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP040919.1\|WP_000212678.1\|2270355_2270661_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_CP040919.1\|WP_000102278.1\|2279814_2279904_+\|stress-response-protein-YnhF	unknown	unknown	unknown
NZ_CP040919.1\|WP_000493947.1\|2274118_2274760_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP040919.1\|WP_038432030.1\|2271234_2272491_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602

Protein	Function_ID	Function_description	E-value
NZ_CP040919.1\|WP_001182363.1\|2276237_2277449_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP040919.1\|WP_000701040.1\|2280069_2281239_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.92383e-98
NZ_CP040919.1\|WP_001070227.1\|2262883_2263510_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	5.22783e-140
NZ_CP040919.1\|WP_000587589.1\|2267801_2268614_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	6.83407e-174
NZ_CP040919.1\|WP_022645745.1\|2268625_2270230_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP040919.1\|WP_000528342.1\|2262218_2262428_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
NZ_CP040919.1\|WP_072224394.1\|2265636_2266284_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	1.85598e-122
NZ_CP040919.1\|WP_022645749.1\|2263530_2265633_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
NZ_CP040919.1\|WP_022645747.1\|2266347_2267016_+\|4Fe-4S-ferredoxin-type-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	2.88774e-75
NZ_CP040919.1\|WP_000269493.1\|2277561_2278494_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP040919.1\|WP_000190982.1\|2278490_2279516_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP040919.1\|WP_000101179.1\|2282093_2282921_-\|C40-family-peptidase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	5.96691e-47
NZ_CP040919.1\|WP_001295403.1\|2260249_2261662_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP040919.1\|WP_022645746.1\|2267012_2267798_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	2.24741e-162
NZ_CP040919.1\|WP_000007283.1\|2281384_2281966_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
NZ_CP040919.1\|WP_000098896.1\|2274799_2275948_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP040919.1\|WP_000212678.1\|2270355_2270661_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	1.20156e-64
NZ_CP040919.1\|WP_000493947.1\|2274118_2274760_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
NZ_CP040919.1\|WP_038432030.1\|2271234_2272491_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0

>NZ_CP040919.1|WP_000212678.1|2270355_2270661_-|monooxygenase
MATLLQLHFSFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>NZ_CP040919.1|WP_022645745.1|2268625_2270230_-|FAD-NAD(P)-binding-protein
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKLMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMIATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHTVTDQALNAEIQKGEYGLLDRVFRLIVEEIKFADPGWSQRIALESLNVDSFAQAWFAERKQRAPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEEIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARKRLSFD
>NZ_CP040919.1|WP_000587589.1|2267801_2268614_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATHPGERPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>NZ_CP040919.1|WP_022645746.1|2267012_2267798_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQNQLANYVPQFTPQFWPVWLIIAGLLLVGMWLVLGLHALLRARGVKKSATDHGEKVYLYSKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYLGVMYGLLPLLLLTGLLCLYPQAVGDMFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NZ_CP040919.1|WP_022645747.1|2266347_2267016_+|4Fe-4S-ferredoxin-type-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKKVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTAASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQENKYYQYQLPGAGKPHLYRRLGQHLIKKENV
>NZ_CP040919.1|WP_072224394.1|2265636_2266284_+|YdhW-family-putative-oxidoreductase-system-protein
MGEMNHKDELPLAEVSEIDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLENIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>NZ_CP040919.1|WP_022645749.1|2263530_2265633_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRAYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPGTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEDMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>NZ_CP040919.1|WP_001070227.1|2262883_2263510_+|ferredoxin-like-protein
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQEEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>NZ_CP040919.1|WP_000528342.1|2262218_2262428_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>NZ_CP040919.1|WP_001295403.1|2260249_2261662_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_CP040919.1|WP_038432030.1|2271234_2272491_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKANDTLLAGGTMNNLGGEDSDTIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFIVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDSVTFSVGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>NZ_CP040919.1|WP_000493947.1|2274118_2274760_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NZ_CP040919.1|WP_000098896.1|2274799_2275948_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NZ_CP040919.1|WP_001182363.1|2276237_2277449_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>NZ_CP040919.1|WP_000269493.1|2277561_2278494_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRLVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NZ_CP040919.1|WP_000190982.1|2278490_2279516_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP040919.1|WP_000102278.1|2279814_2279904_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NZ_CP040919.1|WP_000701040.1|2280069_2281239_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS
>NZ_CP040919.1|WP_000007283.1|2281384_2281966_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA
>NZ_CP040919.1|WP_000101179.1|2282093_2282921_-|C40-family-peptidase
MARINRISITLCALLFTTLPLTPMAHASKQARESSATTHITKKADKKKSTATTKKTQKASQKTAKKAASKSTIKSKTASSVKKSSITASKNAKTRSKHAVNKTASANFTEKCTKRKGYKSHCVKVKNAASGTLADAHKAKVQKATKVAMNKLMQQIGKPYRWGGSSPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNGKFIQSPRTGQEIQITSLSEDYWQRHYVGARRVMTPKTLR

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Crispr_ID: NZ_CP040919_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040919_4

3006994-3007085

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040919_4

>merge|NZ_CP040919|4|3006994-3007085|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>NZ_CP040919|4|4|3006994-3007085|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040919.1\|WP_022645498.1\|3004435_3005026_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP040919.1\|WP_001571241.1\|2996508_3000471_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP040919.1\|WP_001230246.1\|3015957_3017130_-\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992
NZ_CP040919.1\|WP_022645489.1\|3017924_3018953_-\|TMAO-reductase-system-periplasmic-protein-TorT	unknown	unknown	gnl\|CDD\|236801
NZ_CP040919.1\|WP_001400192.1\|3003625_3004426_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP040919.1\|WP_024175781.1\|3002527_3003220_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_CP040919.1\|WP_022645491.1\|3012815_3013415_-\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326
NZ_CP040919.1\|WP_022645490.1\|3013411_3015958_-\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_CP040919.1\|WP_022645496.1\|3005551_3006880_+\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NZ_CP040919.1\|WP_022645495.1\|3007508_3008105_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP040919.1\|WP_038432005.1\|3017259_3017952_+\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NZ_CP040919.1\|WP_000979516.1\|2996244_2996454_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040919.1\|WP_022645499.1\|3003231_3003618_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_CP040919.1\|WP_000024560.1\|3012358_3012664_+\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_CP040919.1\|WP_001143120.1\|3008125_3008353_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182285
NZ_CP040919.1\|WP_001571240.1\|3000510_3001149_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_CP040919.1\|WP_022645494.1\|3008390_3009632_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NZ_CP040919.1\|WP_022645500.1\|3001436_3002528_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP040919.1\|WP_022645492.1\|3011438_3012359_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP040919.1\|WP_022645497.1\|3005036_3005531_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654

Protein	Function_ID	Function_description	E-value
NZ_CP040919.1\|WP_022645498.1\|3004435_3005026_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	4.73341e-131
NZ_CP040919.1\|WP_001571241.1\|2996508_3000471_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP040919.1\|WP_001230246.1\|3015957_3017130_-\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
NZ_CP040919.1\|WP_001400192.1\|3003625_3004426_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	4.94241e-139
NZ_CP040919.1\|WP_024175781.1\|3002527_3003220_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	2.05349e-168
NZ_CP040919.1\|WP_022645491.1\|3012815_3013415_-\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	1.07144e-83
NZ_CP040919.1\|WP_022645490.1\|3013411_3015958_-\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_CP040919.1\|WP_022645496.1\|3005551_3006880_+\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP040919.1\|WP_022645495.1\|3007508_3008105_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	3.61568e-133
NZ_CP040919.1\|WP_038432005.1\|3017259_3017952_+\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	1.86921e-136
NZ_CP040919.1\|WP_022645497.1\|3005036_3005531_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	3.51045e-104
NZ_CP040919.1\|WP_022645499.1\|3003231_3003618_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	2.63122e-84
NZ_CP040919.1\|WP_000024560.1\|3012358_3012664_+\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	5.75956e-65
NZ_CP040919.1\|WP_001143120.1\|3008125_3008353_+\|hypothetical-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44
NZ_CP040919.1\|WP_001571240.1\|3000510_3001149_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.03073e-152
NZ_CP040919.1\|WP_022645494.1\|3008390_3009632_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NZ_CP040919.1\|WP_022645500.1\|3001436_3002528_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP040919.1\|WP_022645492.1\|3011438_3012359_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NZ_CP040919.1\|WP_022645489.1\|3017924_3018953_-\|TMAO-reductase-system-periplasmic-protein-TorT	gnl\|CDD\|236801	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional.	6.65698e-176

>NZ_CP040919.1|WP_022645496.1|3005551_3006880_+|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPAFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNRVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRRLVDVPPPEVIHQEP
>NZ_CP040919.1|WP_022645497.1|3005036_3005531_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWSVFNENRTLCVNTLSAGQELLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEEALVSFDCRISQVVSVGTHDILFCAIEAIHRHATPYGLVWFDRSYHALMRPAC
>NZ_CP040919.1|WP_022645498.1|3004435_3005026_+|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWRETPVSDETLREIYALMKWGPTSANCSPARIVFIRTPEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPQLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQYVDDAFFAGSTLKSNLLINIGYGDSSKLFARLPRLSFEEACGLL
>NZ_CP040919.1|WP_001400192.1|3003625_3004426_+|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIERYAVVGHALGALVGMQLALDYPASVTVLVSVNGWLRINAHTRRCFQVREQLLHSGGAQAWVAAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQKMVMRYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>NZ_CP040919.1|WP_022645499.1|3003231_3003618_+|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLENIRKVIETAGGSMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_CP040919.1|WP_024175781.1|3002527_3003220_+|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQTALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDAQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFAQKAALFNIETFFGWVSDVETFCDALSPTSFARIA
>NZ_CP040919.1|WP_022645500.1|3001436_3002528_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPSDDYFSRRYDYLTEYVQVLRDLWGTGKSDFKGDFFTMNDCRVSPQPSVPMKVICAGQSDAGMAFSAQYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVATVPGAEGVLLTFDDFLSGIENFGERIQPLMQCRAHLPALTQEVA
>NZ_CP040919.1|WP_001571240.1|3000510_3001149_-|HTH-type-transcriptional-regulator-RutR
MTQGAVKITGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR
>NZ_CP040919.1|WP_001571241.1|2996508_3000471_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQSLPMLEQPVAAGEMSPVINPAEPKDIVGYVREATPREVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGRGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVIDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQTMRSKGRQVFQAVRENSEDTREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLPALIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDDTLHHQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP040919.1|WP_000979516.1|2996244_2996454_-|hypothetical-protein
MMLQLCATMLNVTCVASLKMNEMLIKEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH
>NZ_CP040919.1|WP_022645495.1|3007508_3008105_+|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGANKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_CP040919.1|WP_001143120.1|3008125_3008353_+|hypothetical-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NZ_CP040919.1|WP_022645494.1|3008390_3009632_-|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAATVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKTNRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDTNGFCPMDKFDSVLNEAVK
>NZ_CP040919.1|WP_022645492.1|3011438_3012359_+|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFSRQFQHGDSQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPRKDWGKA
>NZ_CP040919.1|WP_000024560.1|3012358_3012664_+|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP
>NZ_CP040919.1|WP_022645491.1|3012815_3013415_-|molecular-chaperone-TorD
MTTLTAPQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLTAAVNELENRIAALTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGSVPARRIDSLRQKTLTALWEWLPEFAARCRQYDSFGFYAALSQLLLVLVECDHQNR
>NZ_CP040919.1|WP_022645490.1|3013411_3015958_-|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATEAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYEQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAYTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGMARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSTPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRNGDVVRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYSGTVEQVTAFNGPVEMVAQCEYVPASQVKS
>NZ_CP040919.1|WP_001230246.1|3015957_3017130_-|pentaheme-c-type-cytochrome-TorC
MRKLWNALRRPSARWSVLALVATGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASAVKVIKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEISHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK
>NZ_CP040919.1|WP_038432005.1|3017259_3017952_+|two-component-system-response-regulator-TorR
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLRRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC
>NZ_CP040919.1|WP_022645489.1|3017924_3018953_-|TMAO-reductase-system-periplasmic-protein-TorT
MRVLLLLLLSLFMLSAFSADNLLRWHDAQHFSVQPSTPLKTKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRPVYYYQHTSAAKK

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Crispr_ID: NZ_CP040919_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040919_5

3140069-3140216

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTACGGCAGTGAAC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP040919_5

>merge|NZ_CP040919|5|3140069-3140216|CRISPRCasFinder,PILER-CR
CATTTTATCTGCCTGTACGGCAGTGAACATGGTGGGCGGGTGGAGTATGTTACCAGTGAATTTCTAAGCTGCCTGTACGGCAGTGAACGCCAACTTTCACAGCCTTTGCAAGATTGTTCCTTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP040919|5|5|3140069-3140216|CRISPRCasFinder
CATTTTATCTGCCTGTACGGCAGTGAAC	ATGGTGGGCGGGTGGAGTATGTTACCAGTGAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCCAACTTTCACAGCCTTTGCAAGATTGTTCC
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP040919|5|3|3140077-3140216|PILER-CR
CTGCCTGTACGGCAGTGAACATGGTGGG	CGGGTGGAGTATGTTACCAGTGAATTTCTAAG
CTGCCTGTACGGCAGTGAACGCCAACTT	TCACAGCCTTTGCAAGATTGTTCCTTTCTAAG
CTGCCTGTACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040919.1\|WP_022645453.1\|3138475_3139180_+\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP040919.1\|WP_000488716.1\|3149923_3150619_+\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP040919.1\|WP_001400542.1\|3146886_3147843_+\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|225537
NZ_CP040919.1\|WP_022645444.1\|3143677_3145624_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP040919.1\|WP_000228473.1\|3132819_3133314_-\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP040919.1\|WP_022645455.1\|3128614_3132685_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP040919.1\|WP_000067771.1\|3126490_3127834_-\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
NZ_CP040919.1\|WP_000599806.1\|3147839_3149498_-\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP040919.1\|WP_001040187.1\|3139464_3139683_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP040919.1\|WP_022645441.1\|3151076_3151976_+\|L-lysine-exporter-LysO	unknown	unknown	gnl\|CDD\|225287
NZ_CP040919.1\|WP_001202192.1\|3136712_3138434_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP040919.1\|WP_000886683.1\|3125107_3126400_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP040919.1\|WP_000934041.1\|3140430_3142707_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP040919.1\|WP_001295343.1\|3127844_3128456_-\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP040919.1\|WP_001043590.1\|3134945_3136712_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP040919.1\|WP_022645440.1\|3152118_3153771_+\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP040919.1\|WP_000537432.1\|3133857_3134823_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP040919.1\|WP_000410785.1\|3143380_3143605_+\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|77494
NZ_CP040919.1\|WP_000520781.1\|3142737_3143058_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP040919.1\|WP_000746460.1\|3145620_3146736_-\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211

Protein	Function_ID	Function_description	E-value
NZ_CP040919.1\|WP_022645453.1\|3138475_3139180_+\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.78168e-138
NZ_CP040919.1\|WP_000488716.1\|3149923_3150619_+\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	7.82992e-144
NZ_CP040919.1\|WP_001400542.1\|3146886_3147843_+\|DUF535-domain-containing-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	1.4029e-131
NZ_CP040919.1\|WP_022645444.1\|3143677_3145624_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP040919.1\|WP_000228473.1\|3132819_3133314_-\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
NZ_CP040919.1\|WP_022645455.1\|3128614_3132685_-\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP040919.1\|WP_000067771.1\|3126490_3127834_-\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP040919.1\|WP_000599806.1\|3147839_3149498_-\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP040919.1\|WP_001040187.1\|3139464_3139683_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
NZ_CP040919.1\|WP_022645441.1\|3151076_3151976_+\|L-lysine-exporter-LysO	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	2.06035e-116
NZ_CP040919.1\|WP_001202192.1\|3136712_3138434_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP040919.1\|WP_000886683.1\|3125107_3126400_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP040919.1\|WP_000934041.1\|3140430_3142707_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP040919.1\|WP_001295343.1\|3127844_3128456_-\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
NZ_CP040919.1\|WP_001043590.1\|3134945_3136712_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP040919.1\|WP_022645440.1\|3152118_3153771_+\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP040919.1\|WP_000537432.1\|3133857_3134823_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP040919.1\|WP_000410785.1\|3143380_3143605_+\|cold-shock-like-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
NZ_CP040919.1\|WP_000520781.1\|3142737_3143058_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
NZ_CP040919.1\|WP_000746460.1\|3145620_3146736_-\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0

>NZ_CP040919.1|WP_001040187.1|3139464_3139683_+|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP040919.1|WP_022645453.1|3138475_3139180_+|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWCEDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCEEFIGHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLPNKFWVPRCLFSPQE
>NZ_CP040919.1|WP_001202192.1|3136712_3138434_+|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPEVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEATLRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMCEKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>NZ_CP040919.1|WP_001043590.1|3134945_3136712_+|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQTALDNAWVSEFLPLLPQGIDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGQIIEQGRYAELSVAGGPFATLLAHRQEEI
>NZ_CP040919.1|WP_000537432.1|3133857_3134823_+|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>NZ_CP040919.1|WP_000228473.1|3132819_3133314_-|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP040919.1|WP_022645455.1|3128614_3132685_-|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEEDESHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPTQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPVQQPYYAPAPEQSAQQPYYAPAPEQSVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSAGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNAEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFTLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPIAPQQQYQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NZ_CP040919.1|WP_001295343.1|3127844_3128456_-|outer-membrane-lipoprotein-chaperone-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>NZ_CP040919.1|WP_000067771.1|3126490_3127834_-|replication-associated-recombination-protein-A
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTKDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>NZ_CP040919.1|WP_000886683.1|3125107_3126400_-|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG
>NZ_CP040919.1|WP_000934041.1|3140430_3142707_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>NZ_CP040919.1|WP_000520781.1|3142737_3143058_-|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NZ_CP040919.1|WP_000410785.1|3143380_3143605_+|cold-shock-like-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>NZ_CP040919.1|WP_022645444.1|3143677_3145624_-|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVSNPPAIEKVNVAGGTEPVVNTASGWRQFASGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE
>NZ_CP040919.1|WP_000746460.1|3145620_3146736_-|macrolide-transporter-subunit-MacA
MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>NZ_CP040919.1|WP_001400542.1|3146886_3147843_+|DUF535-domain-containing-protein
MNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAELTFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFRG
>NZ_CP040919.1|WP_000599806.1|3147839_3149498_-|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENVPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>NZ_CP040919.1|WP_000488716.1|3149923_3150619_+|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRN
>NZ_CP040919.1|WP_022645441.1|3151076_3151976_+|L-lysine-exporter-LysO
MFSGLLIILVPLILGYLIPLRQKAALKVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNYHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVASSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>NZ_CP040919.1|WP_022645440.1|3152118_3153771_+|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIATLQGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIVLREALKAQCLAVDANAHVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETSKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGEDFSAVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA

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Crispr_ID: NZ_CP040919_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040919_6

4076676-4076808

Orphan

Consensus_repeat	Method
ATCACCAATATTGAAAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP040919_6

>merge|NZ_CP040919|6|4076676-4076808|PILER-CR
ATCACCAATATTGAAAATGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGCTCCTCACCAATATTGAAAACATGGCGTAGCAAAAAGAAATTTTCAATATTGTTTTATGGATCACCAATATTGAAAG

>NZ_CP040919|6|4|4076676-4076808|PILER-CR
ATCACCAATATTGAAAA	TGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGCTC
CTCACCAATATTGAAAA	CATGGCGTAGCAAAAAGAAATTTTCAATATTGTTTTATGG
ATCACCAATATTGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040919.1\|WP_000624375.1\|4068685_4069165_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP040919.1\|WP_000333125.1\|4084324_4084720_-\|carnitine-metabolism-transcriptional-regulator-CaiF	unknown	unknown	gnl\|CDD\|183154
NZ_CP040919.1\|WP_000349943.1\|4079872_4081090_+\|L-carnitine-CoA-transferase	unknown	unknown	gnl\|CDD\|179589
NZ_CP040919.1\|WP_001558523.1\|4088219_4089368_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_CP040919.1\|WP_000692225.1\|4075814_4076585_-\|electron-transfer-flavoprotein	unknown	unknown	gnl\|CDD\|179569
NZ_CP040919.1\|WP_000125568.1\|4068366_4068600_-\|antitoxin	unknown	unknown	gnl\|CDD\|227619
NZ_CP040919.1\|WP_001091512.1\|4074858_4075800_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|235120
NZ_CP040919.1\|WP_000122882.1\|4083615_4084206_+\|carnitine-operon-protein-CaiE	unknown	unknown	gnl\|CDD\|184189
NZ_CP040919.1\|WP_001160966.1\|4068049_4068364_-\|CcdB-family-protein	unknown	unknown	gnl\|CDD\|376629
NZ_CP040919.1\|WP_022645162.1\|4084980_4088202_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP040919.1\|WP_000600732.1\|4071210_4071741_-\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	unknown	unknown	gnl\|CDD\|234852
NZ_CP040919.1\|WP_000203741.1\|4073237_4073525_-\|ferredoxin-like-protein-FixX	unknown	unknown	gnl\|CDD\|185346
NZ_CP040919.1\|WP_140028030.1\|4069355_4071218_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	unknown	unknown	gnl\|CDD\|235131
NZ_CP040919.1\|WP_022645163.1\|4081162_4082716_+\|crotonobetaine/carnitine-CoA-ligase	unknown	unknown	gnl\|CDD\|181195
NZ_CP040919.1\|WP_000347117.1\|4078601_4079744_+\|crotonobetainyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|179566
NZ_CP040919.1\|WP_022645164.1\|4073521_4074808_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182273
NZ_CP040919.1\|WP_022645161.1\|4090810_4091725_-\|ribonucleoside-hydrolase-RihC	unknown	unknown	gnl\|CDD\|182713
NZ_CP040919.1\|WP_001295419.1\|4082824_4083610_+\|crotonobetainyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|179599
NZ_CP040919.1\|WP_001183201.1\|4071848_4073180_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
NZ_CP040919.1\|WP_000787109.1\|4077056_4078571_+\|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter	unknown	unknown	gnl\|CDD\|179568

Protein	Function_ID	Function_description	E-value
NZ_CP040919.1\|WP_000624375.1\|4068685_4069165_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.07206e-127
NZ_CP040919.1\|WP_000333125.1\|4084324_4084720_-\|carnitine-metabolism-transcriptional-regulator-CaiF	gnl\|CDD\|183154	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF.	1.42176e-74
NZ_CP040919.1\|WP_000349943.1\|4079872_4081090_+\|L-carnitine-CoA-transferase	gnl\|CDD\|179589	PRK03525, PRK03525, L-carnitine CoA-transferase.	0
NZ_CP040919.1\|WP_001558523.1\|4088219_4089368_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_CP040919.1\|WP_000692225.1\|4075814_4076585_-\|electron-transfer-flavoprotein	gnl\|CDD\|179569	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed.	7.20746e-170
NZ_CP040919.1\|WP_000125568.1\|4068366_4068600_-\|antitoxin	gnl\|CDD\|227619	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only].	2.8576e-23
NZ_CP040919.1\|WP_001091512.1\|4074858_4075800_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|235120	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein.	0
NZ_CP040919.1\|WP_000122882.1\|4083615_4084206_+\|carnitine-operon-protein-CaiE	gnl\|CDD\|184189	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.	4.35289e-143
NZ_CP040919.1\|WP_001160966.1\|4068049_4068364_-\|CcdB-family-protein	gnl\|CDD\|376629	pfam01845, CcdB, CcdB protein.	6.31846e-38
NZ_CP040919.1\|WP_022645162.1\|4084980_4088202_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP040919.1\|WP_000600732.1\|4071210_4071741_-\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	gnl\|CDD\|234852	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF.	2.62905e-133
NZ_CP040919.1\|WP_000203741.1\|4073237_4073525_-\|ferredoxin-like-protein-FixX	gnl\|CDD\|185346	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional.	1.84173e-69
NZ_CP040919.1\|WP_140028030.1\|4069355_4071218_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0
NZ_CP040919.1\|WP_022645163.1\|4081162_4082716_+\|crotonobetaine/carnitine-CoA-ligase	gnl\|CDD\|181195	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated.	0
NZ_CP040919.1\|WP_000347117.1\|4078601_4079744_+\|crotonobetainyl-CoA-dehydrogenase	gnl\|CDD\|179566	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated.	0
NZ_CP040919.1\|WP_022645164.1\|4073521_4074808_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182273	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.	0
NZ_CP040919.1\|WP_022645161.1\|4090810_4091725_-\|ribonucleoside-hydrolase-RihC	gnl\|CDD\|182713	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional.	0
NZ_CP040919.1\|WP_001295419.1\|4082824_4083610_+\|crotonobetainyl-CoA-hydratase	gnl\|CDD\|179599	PRK03580, PRK03580, crotonobetainyl-CoA hydratase.	5.82869e-179
NZ_CP040919.1\|WP_001183201.1\|4071848_4073180_-\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.54841e-58
NZ_CP040919.1\|WP_000787109.1\|4077056_4078571_+\|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter	gnl\|CDD\|179568	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter.	0

>NZ_CP040919.1|WP_000692225.1|4075814_4076585_-|electron-transfer-flavoprotein
MKIITCYKCVPDEQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQLKQQAAEGQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAAWSEQQVAAPKQRERQRIVIEGDGEEQIAAFAENLRKVI
>NZ_CP040919.1|WP_001091512.1|4074858_4075800_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNTFSQVWVFSDTPSRLPELMNGAQALANQINTFVLNDADGAQAIQLGANHVWKLSGKPDERMIEDYAGVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLKAAVSNDASTVSVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDVAQPDASRTGETHTVEWQAPAVAITRTATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALAR
>NZ_CP040919.1|WP_022645164.1|4073521_4074808_-|FAD-dependent-oxidoreductase
MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQYLESGPLRDMRMYQKLPAFLDNPRMFNGYPELAVGVARDLFTIDGSAPELMRKKILRHGKKVGFINLIKDGMKGVTVL
>NZ_CP040919.1|WP_000203741.1|4073237_4073525_-|ferredoxin-like-protein-FixX
MTSPVNVDVKLGVNKFNVDEEHPHIVVKADADKQALELLVKACPAGLYKKQDDGSVRFDYAGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG
>NZ_CP040919.1|WP_001183201.1|4071848_4073180_-|MFS-transporter
MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISSTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG
>NZ_CP040919.1|WP_000600732.1|4071210_4071741_-|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF
MILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGTHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQARHYKQRLLEWQEAHHG
>NZ_CP040919.1|WP_140028030.1|4069355_4071218_-|glutathione-regulated-potassium-efflux-system-protein-KefC
MDSHTLIQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAEIGVVLMLFIIGLELDPQRLWKLRAAVFGGGALQMVICGGLLGLFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAIPLVAMIPLLAASSASTTMGAFALSALKVAGALALVVLLGRYVTRPALRFVARSGLREGFSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLLENPLRIVILLLGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQGSEFAFVVFGAAQMANVLEPEWAKSLTLAVALSMAATPILLVILNRLEQSSTEEAREADEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKIGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSS
>NZ_CP040919.1|WP_000624375.1|4068685_4069165_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGRHTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR
>NZ_CP040919.1|WP_000125568.1|4068366_4068600_-|antitoxin
MTAKRTTQSVTVTVDRELVNRARDAGLNMSATLTVALNAELKKHAATRWREENTEAIAALNQLADETGCFSDEYRSF
>NZ_CP040919.1|WP_001160966.1|4068049_4068364_-|CcdB-family-protein
MQFTVYRSRGRNAAFPFVIDVTSDIIGEINRRIVIPLTPIERFSRIRPPERLNPILLLVDGKEYVLMTHETATVPVNALGTKFCDASAHRTLIKGALDFMLDGI
>NZ_CP040919.1|WP_000787109.1|4077056_4078571_+|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter
MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVLGLTASTWILWTVLGSNTLLLMDKNIINIPNLIEQYGVARAIIETWAALPLSTATMWGFFILCFIATVTLVNACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQNWKD
>NZ_CP040919.1|WP_000347117.1|4078601_4079744_+|crotonobetainyl-CoA-dehydrogenase
MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR
>NZ_CP040919.1|WP_000349943.1|4079872_4081090_+|L-carnitine-CoA-transferase
MDHLPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGLTATTAALAALHKVRETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMTKGKDPYYAGCGLYKCADGYIVMELVGITQIAECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLAAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNVMPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKVED
>NZ_CP040919.1|WP_022645163.1|4081162_4082716_+|crotonobetaine/carnitine-CoA-ligase
MDIIGGQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQKYRATITECIPMMIRTLMVQPPSANDRQHRLREVMFYLNLSEQEKDAFCERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGELGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK
>NZ_CP040919.1|WP_001295419.1|4082824_4083610_+|crotonobetainyl-CoA-hydratase
MSESLHLTRNGSILEITLDRPKANAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGIVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKGR
>NZ_CP040919.1|WP_000122882.1|4083615_4084206_+|carnitine-operon-protein-CaiE
MSYYAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEENRPRLQGTTDVTPKR
>NZ_CP040919.1|WP_000333125.1|4084324_4084720_-|carnitine-metabolism-transcriptional-regulator-CaiF
MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR
>NZ_CP040919.1|WP_022645162.1|4084980_4088202_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVNLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK
>NZ_CP040919.1|WP_001558523.1|4088219_4089368_-|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAETYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTIKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTAK
>NZ_CP040919.1|WP_022645161.1|4090810_4091725_-|ribonucleoside-hydrolase-RihC
MRLPIFLDTDPGIDDAVAIAAAIFAPELDLQLMTTVAGNVSVEKTTRNALQLLHFWNAEIPLAQGAAVPLVRAPRDAASVHGESGMAGYDFVEHNRKPLGIPAFLAIRDALMRAPEPVTLVAIGPLTNIALLLSQCPECKQYIRRLVIMGGSAGRGNCTPNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLATLPELNRTGKMLHALFSHYRSGSMQSGLRMHDLCAIAWLVRPDLFTLKPCFVAVETQGEFTSGTTVVDIDGCLGKPANVKVALDLNVKGFQQWVAEVLALAS

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Crispr_ID: NZ_CP040919_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040919_7

4161371-4161535

Orphan

Consensus_repeat	Method
CCGTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCAAACCTGCACGTTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040919_7

>merge|NZ_CP040919|7|4161371-4161535|CRISPRCasFinder
CCGTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCAAACCTGCACGTTAGCCCTTCGTAGGCCAGATAAGGCGCGCCCGCGTCGCATCTGGCATCTGCACCCAAATACCGTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACAAAACCTGCACGTTAG

>NZ_CP040919|7|6|4161371-4161535|CRISPRCasFinder
CCGTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCAAACCTGCACGTTAG	CCCTTCGTAGGCCAGATAAGGCGCGCCCGCGTCGCATCTGGCATCTGCACCCAAATA
CCGTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACAAAACCTGCACGTTAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040919.1\|WP_001272335.1\|4160245_4161277_+\|16S-rRNA-(guanine(1207)-N(2))-methyltransferase-RsmC	unknown	unknown	gnl\|CDD\|181902
NZ_CP040919.1\|WP_000331576.1\|4162392_4163181_+\|siderophore-iron-reductase-FhuF	unknown	unknown	gnl\|CDD\|182616
NZ_CP040919.1\|WP_001292674.1\|4168614_4170906_+\|phosphatidylglycerol--membrane-oligosaccharide-glycerophosphotransferase	unknown	unknown	gnl\|CDD\|179648
NZ_CP040919.1\|WP_001092461.1\|4159314_4159761_-\|ribosomal-protein-S18-alanine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|181904
NZ_CP040919.1\|WP_001376704.1\|4165197_4165968_+\|threonine/serine-exporter-ThrE-family-protein	unknown	unknown	gnl\|CDD\|225514
NZ_CP040919.1\|WP_001088430.1\|4152600_4153464_+\|YjjW-family-glycine-radical-enzyme-activase	unknown	unknown	gnl\|CDD\|274938
NZ_CP040919.1\|WP_001309201.1\|4163218_4163896_-\|DNA-binding-transcriptional-activator-BglJ	unknown	unknown	gnl\|CDD\|236915
NZ_CP040919.1\|WP_000936635.1\|4163853_4164579_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP040919.1\|WP_000098815.1\|4166538_4167078_+\|primosomal-protein-DnaT	unknown	unknown	gnl\|CDD\|179484
NZ_CP040919.1\|WP_000538191.1\|4165958_4166432_+\|threonine/serine-exporter	unknown	unknown	gnl\|CDD\|182143
NZ_CP040919.1\|WP_000175943.1\|4156942_4158532_-\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
NZ_CP040919.1\|WP_038432249.1\|4158622_4159300_-\|pyrimidine-5'-nucleotidase	unknown	unknown	gnl\|CDD\|181865
NZ_CP040919.1\|WP_000799911.1\|4167080_4167818_+\|DNA-replication-protein-DnaC	unknown	unknown	gnl\|CDD\|181180
NZ_CP040919.1\|WP_001295748.1\|4155944_4156550_-\|molecular-chaperone-OsmY	unknown	unknown	gnl\|CDD\|182556
NZ_CP040919.1\|WP_001422893.1\|4162015_4162252_-\|DUF1435-domain-containing-protein	unknown	unknown	gnl\|CDD\|369291
NZ_CP040919.1\|WP_000204018.1\|4159729_4160143_-\|DNA-polymerase-III-subunit-psi	unknown	unknown	gnl\|CDD\|180735
NZ_CP040919.1\|WP_001305619.1\|4167866_4168361_+\|DUF2501-domain-containing-protein	unknown	unknown	gnl\|CDD\|236951
NZ_CP040919.1\|WP_000490275.1\|4155655_4155817_-\|DUF1328-domain-containing-protein	unknown	unknown	gnl\|CDD\|227774
NZ_CP040919.1\|WP_038432251.1\|4153682_4154465_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|171118
NZ_CP040919.1\|WP_000531528.1\|4154461_4155535_-\|patatin-family-protein	unknown	unknown	gnl\|CDD\|227013

Protein	Function_ID	Function_description	E-value
NZ_CP040919.1\|WP_001272335.1\|4160245_4161277_+\|16S-rRNA-(guanine(1207)-N(2))-methyltransferase-RsmC	gnl\|CDD\|181902	PRK09489, rsmC, 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC.	0
NZ_CP040919.1\|WP_000331576.1\|4162392_4163181_+\|siderophore-iron-reductase-FhuF	gnl\|CDD\|182616	PRK10647, PRK10647, ferric iron reductase involved in ferric hydroximate transport; Provisional.	4.21041e-176
NZ_CP040919.1\|WP_001292674.1\|4168614_4170906_+\|phosphatidylglycerol--membrane-oligosaccharide-glycerophosphotransferase	gnl\|CDD\|179648	PRK03776, PRK03776, phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase.	0
NZ_CP040919.1\|WP_001092461.1\|4159314_4159761_-\|ribosomal-protein-S18-alanine-N-acetyltransferase	gnl\|CDD\|181904	PRK09491, rimI, ribosomal-protein-alanine N-acetyltransferase; Provisional.	1.40837e-111
NZ_CP040919.1\|WP_001376704.1\|4165197_4165968_+\|threonine/serine-exporter-ThrE-family-protein	gnl\|CDD\|225514	COG2966, COG2966, Uncharacterized conserved protein [Function unknown].	3.2051e-97
NZ_CP040919.1\|WP_001088430.1\|4152600_4153464_+\|YjjW-family-glycine-radical-enzyme-activase	gnl\|CDD\|274938	TIGR04041, glycine_radical_enzyme_activase_YjjW_family, glycine radical enzyme activase, YjjW family. Members of this family are radical SAM enzymes, designated YjjW in E. coli, that are paired with and appear to activate a glycyl radical enzyme of unknown function, designated YjjI. This activase and its target are found in Clostridial species as well as E. coli and cousins. Members of this family may be misannotated as pyruvate formate lyase activating enzyme. [Protein fate, Protein modification and repair].	6.64188e-163
NZ_CP040919.1\|WP_001309201.1\|4163218_4163896_-\|DNA-binding-transcriptional-activator-BglJ	gnl\|CDD\|236915	PRK11475, PRK11475, DNA-binding transcriptional activator BglJ; Provisional.	8.38273e-127
NZ_CP040919.1\|WP_000936635.1\|4163853_4164579_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	7.97362e-26
NZ_CP040919.1\|WP_000098815.1\|4166538_4167078_+\|primosomal-protein-DnaT	gnl\|CDD\|179484	PRK02854, PRK02854, primosomal protein DnaT.	6.32406e-124
NZ_CP040919.1\|WP_000538191.1\|4165958_4166432_+\|threonine/serine-exporter	gnl\|CDD\|182143	PRK09917, PRK09917, threonine/serine exporter.	4.73594e-99
NZ_CP040919.1\|WP_000175943.1\|4156942_4158532_-\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
NZ_CP040919.1\|WP_038432249.1\|4158622_4159300_-\|pyrimidine-5'-nucleotidase	gnl\|CDD\|181865	PRK09449, PRK09449, dUMP phosphatase; Provisional.	2.09916e-172
NZ_CP040919.1\|WP_000799911.1\|4167080_4167818_+\|DNA-replication-protein-DnaC	gnl\|CDD\|181180	PRK07952, PRK07952, DNA replication protein DnaC; Validated.	2.89557e-176
NZ_CP040919.1\|WP_001295748.1\|4155944_4156550_-\|molecular-chaperone-OsmY	gnl\|CDD\|182556	PRK10568, PRK10568, molecular chaperone OsmY.	4.36119e-102
NZ_CP040919.1\|WP_001422893.1\|4162015_4162252_-\|DUF1435-domain-containing-protein	gnl\|CDD\|369291	pfam07256, DUF1435, Protein of unknown function (DUF1435). This family consists of several hypothetical Enterobacterial proteins of around 80 residues in length. The function of this family is unknown.	1.64081e-26
NZ_CP040919.1\|WP_000204018.1\|4159729_4160143_-\|DNA-polymerase-III-subunit-psi	gnl\|CDD\|180735	PRK06856, PRK06856, DNA polymerase III subunit psi; Validated.	5.48557e-70
NZ_CP040919.1\|WP_001305619.1\|4167866_4168361_+\|DUF2501-domain-containing-protein	gnl\|CDD\|236951	PRK11667, PRK11667, hypothetical protein; Provisional.	4.66508e-71
NZ_CP040919.1\|WP_000490275.1\|4155655_4155817_-\|DUF1328-domain-containing-protein	gnl\|CDD\|227774	COG5487, COG5487, Small integral membrane protein [Function unknown].	4.97087e-08
NZ_CP040919.1\|WP_038432251.1\|4153682_4154465_-\|metal-dependent-hydrolase	gnl\|CDD\|171118	PRK11449, PRK11449, metal-dependent hydrolase.	1.07009e-178
NZ_CP040919.1\|WP_000531528.1\|4154461_4155535_-\|patatin-family-protein	gnl\|CDD\|227013	COG4667, COG4667, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only].	9.75567e-168

>NZ_CP040919.1|WP_001272335.1|4160245_4161277_+|16S-rRNA-(guanine(1207)-N(2))-methyltransferase-RsmC
MSAFTPASEVLLRHSDDFEQSRILFAGDLQDDLPARLDTAASRAHTQQFHHWQVLSRQMGDNARFSLVATADDVADCNTLIYYWPKNKPEAQFQLMNLLSLLPVGTDIFVVGENRSGVRSAEQMLADYAPLNKVDSARRCGLYFGRLEKQPEFDADKFWGEYSVDGLTVKTLPGVFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFGFHEVIAQTGRFKVYRAIMTRQAKKG
>NZ_CP040919.1|WP_000204018.1|4159729_4160143_-|DNA-polymerase-III-subunit-psi
MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLRALTVSPDQVLQLTPEKIAMLPQGSRCNSWRLGTDEPLSLEGAQVASPALTELRANPTARAALWQQICTYEHDFFPRND
>NZ_CP040919.1|WP_001092461.1|4159314_4159761_-|ribosomal-protein-S18-alanine-N-acetyltransferase
MNTISSLETTDLPAAYHIEQRAHAFPWSEKTFASNQGERYLNFQLTQNGKMAAFAITQVVLDEATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYESLGFNEATIRRNYYPTTDGREDAIIMALPISM
>NZ_CP040919.1|WP_038432249.1|4158622_4159300_-|pyrimidine-5'-nucleotidase
MKWDWIFFDADETLFTFDSFTGLQRMFLDYSVTFTAEDFQDYQAVNKPLWVDYQNGAITSLQLQHGRFESWAERLNVEPGKLNEAFINAMAEICTPLPGAVSLLNAIRGNAKIGIITNGFSALQQVRLERTGLRDYFDLLVISEEVGVAKPNKKIFDYALEQAGNPDRSRVLMVGDTAESDILGGINAGLATCWLNAHNREQPEGIAPTLTVSSLHELEQLLCKH
>NZ_CP040919.1|WP_000175943.1|4156942_4158532_-|peptide-chain-release-factor-3
MTLSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGEMMKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGAVQVFRPISNNDLIVGAVGVLQFDVVVSRLKSEYNVEAVYESVNVATARWVECADAKKFEEFKRKNESQLALDGGDNLAYIATSMVNLRLAQERYPDVQFHQTREH
>NZ_CP040919.1|WP_001295748.1|4155944_4156550_-|molecular-chaperone-OsmY
MTMTRLKISKTLLAVMLTSAVATGSAYAENNAQTTNESAGQKVDSSMNKVGNFMDDSAITAKVKAALVDHDNIKSTDISVKTDQKVVTLSGFVESQAQAEEAVKVAKGVEGVTSVSDKLHVRDAKEGSVKGYAGDTATTSEIKAKLLADDIVPSRHVKVETTDGVVQLSGTVDSQAQSDRAESIAKAVDGVKSVKNDLKTK
>NZ_CP040919.1|WP_000490275.1|4155655_4155817_-|DUF1328-domain-containing-protein
MFRWGIIFLVIALIAAALGFGGLAGTAAGAAKIVFVVGIILFLVSLFMGRKRP
>NZ_CP040919.1|WP_000531528.1|4154461_4155535_-|patatin-family-protein
MGQRIPVTLGNIAPLSLRPFQPGRIALVCEGGGQRGIFTAGVLDEFMRAQFNPFDLYLGTSAGAQNLSAYICNQPGYARKVIMRYTTKREFFDPLRFVRGGNLIDLDWLVEATASQMPLQMDTAARLFDSGKSFYMCACRQDDYAPNYFLPTKQNWLDVIRASSAIPGFYRSGVSLEGINYLDGGISDAIPVKEAARQGAKTLVVIRTVPSQMYYTPQWFKRMERWLGDSSLQPLVNLVQHHETSYREIQQFIEKPPGQLRIFEIYPPKPLHSIALGSRIPALREDYKLGRLCGRYFLATVGKLLTEKAPLSRHLVPVVTPESIVIPPAPVANDTLVTEVIDAPQANDPTFNNEDLA
>NZ_CP040919.1|WP_038432251.1|4153682_4154465_-|metal-dependent-hydrolase
MICRFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAANFARVQALAENYQPLYAALGLHPGMLEKHSDVSLDQLQQALGRRPTKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRQNLPRTGVVHGFSGSLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASMLLETDAPDMPLNGFQGQPNRPEQAARVFAVLCELRPEPADEIAEVLLNNTYAVFNVRG
>NZ_CP040919.1|WP_001088430.1|4152600_4153464_+|YjjW-family-glycine-radical-enzyme-activase
MNSRCALVSKIIPFSCVDGPGSRLALFLQGCNLRCKNCHNPWTMGRCNDCGECVPQCPHQALQIVNSKVVWNAAVCEQCDTCLKMCPQHATPMAQSMNVDEVLSHVRKAVLFIEGITVSGGEATTQLPFVVALFTAIKNDPQLCHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGGACHQQLTGRDNQQIKRSISLLAERGKLAELRLLVIPGHVDYLQHIDELAAFIKGLGDVPVRLNAFHAHGVYGEAQSWASATPEDVEQLADALREHGVSRLIFPALYL
>NZ_CP040919.1|WP_001422893.1|4162015_4162252_-|DUF1435-domain-containing-protein
MLQRTLGSGWGVLLPGLLIAGLMYADLSPDQWRIVILMGLILTPVMLYHKQLRHYVLLPSCLALIAGIMLMIMNLNQG
>NZ_CP040919.1|WP_000331576.1|4162392_4163181_+|siderophore-iron-reductase-FhuF
MAYRSAPLYEDVIWRTHLQPQDAGLAQAIRATIAEHREHLLEFIRLDEPAPLNAMTLAQWSSTNALSSLLVVYSDHIYRNQPTMIRENKPLISLWAQWYIGLMVPPLMLALLTQEKALDVSPEHFHVEFHETGRAACFWVDVCEDKNATLHSPQQRMETLISQALVPVVQALEATGEINGKLIWSNTGYLINWYLTEMKQLLGEATVESLRHALFFEKMLTNGEDNPLWRTVVLRDGLLVRRTCCQRYRLPDVQQCGDCMLK
>NZ_CP040919.1|WP_001309201.1|4163218_4163896_-|DNA-binding-transcriptional-activator-BglJ
MEHSRIKKRNVALIEKCVMSSIGIESLFRKFAGNPYKLHTYTSQESFQDAMSRISFAAVIFSFSAMRGERREGLSCLTELAIKFPRTRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEIFHQELFLSLNGVRQATDRLNNQWYINQSRTLSPTEREILRFMSRGYSMTQIAEQLKRNIKTIRAHKFNVMSKLGVSSDAGLLEAADILLCMRHCEASNVLHPY
>NZ_CP040919.1|WP_000936635.1|4163853_4164579_-|response-regulator-transcription-factor
MLPGCCKNGIVISKIPVMQAGLKEVMRTHFPEYEIISSASAEDLTLLQLRRSGLVIADLAGESEDPRSVCEHYYSLISQYREIHWVFMVSRSWYSQAVELLMCPTATLLSDVEPIENLVKTVRSGNTHAERISAMLTSPAMTETHDFSYRSVILTLSERKVLRLLGKGWGINQIASLLKKSNKTISAQKNSAMRRLAIHSNAEMYAWINSAQGARELNLPSVYGDAAEWNTAELRREMSHS
>NZ_CP040919.1|WP_001376704.1|4165197_4165968_+|threonine/serine-exporter-ThrE-family-protein
MQTEQQRAVTRLCIQCGLFLLQHGAESALVDELSSRLGRALGMDSVESSISSNAIVLTTIKDGQCLTSTRKNQDRGINMHVVTEVQHIVILAEHHLLDYKGVEKRFSQIQPLRYPRWLVALMVGLSCACFCKLNKGGWDGAVITFFASTVAMYIRQLLAQRHLHPQINFCLTAFAATTISGLLLQLPTFSNTPTIAMAASVLLLVPGFPLINAVADMFKGHINTGLARWAIASLLTLATCVGVVMALTIWGLRGWV
>NZ_CP040919.1|WP_000538191.1|4165958_4166432_+|threonine/serine-exporter
MGVIEFLLALAQDMILAAIPAVGFAMVFNVPVRALRWCALLGSIGHGSRMILMTSGLNIEWSTFMASMLVGTIGIQWSRWYLAHPKVFTVAAVIPMFPGISAYTAMISAVKISQLGYSEPLMITLLTNFLTASSIVGALSIGLSIPGLWLYRKRPRV
>NZ_CP040919.1|WP_000098815.1|4166538_4167078_+|primosomal-protein-DnaT
MSSRVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYAVTPARLAELLALEEKLARPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFIRLAALWGVALRAPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPKRDVNTVSEPDSQIPPGFRG
>NZ_CP040919.1|WP_000799911.1|4167080_4167818_+|DNA-replication-protein-DnaC
MKNVGDLMQRLQKMMPAHIKPAFKTGEELLAWQKEQGAIRSAALERENRAMKMQRTFNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFRNSGTSEEQLLNDLSNVDLLVIDEIGVQTESKYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNWDSYRSRVTGKEY
>NZ_CP040919.1|WP_001305619.1|4167866_4168361_+|DUF2501-domain-containing-protein
MMKTVKHLLCCAIAASALISTGAHAASWKDALSSAASELGNQNNTTQEGGWSLASLTNLLSSGNQALSADNMNNAAGILQYCAKQKLASVTDAENIKNQVLEKLGLNSEEQKEDTNYLDGIQGLLKTKDGQQLNLDNIGTTPLAEKVKTKACDLVLKQGLNFIS
>NZ_CP040919.1|WP_001292674.1|4168614_4170906_+|phosphatidylglycerol--membrane-oligosaccharide-glycerophosphotransferase
MSELLSFALFLASVLIYAWKAGRNTWWFAATLTVLGLFVVLNITLFASDYFTGDGINDAVLYTLTNSLTGAGVSKYILPGIGIVLGLTAVFGALGWILRRRRHHPHHFGYSLLALLLALGSVDASPAFRQITELVKSQSRDGDPDFAAYYKEPSKTIPDPKLNLVYIYGESLERTYFDNEAFPDLTPELGALKNEGLDFSHTQQLPGTDYTIAGMVASQCGIPLFAPFEGNASASVSSFFPQNICLGDILKNSGYQNYFVQGANLRFAGKDVFLKSHGFDHLYGSEELKSVVADPHYRNDWGFYDDTVLDEAWKKFEELSRSGQRFSLFTLTVDTHHPDGFISRTCNRKKYDFDGKPNQSFSAVSCSQENIATFINKIKASPWFKDTVIVVSSDHLAMNNTAWKYLNKQDRNNLFFVIRGDKPQQETLAVKRNTMDNGATVLDILGGDNYLGLGRSSLSGQSMSEIFLNIKEKTLAWKPDIIRLWKFPKEMKEFTIDQQKNMIAFSGSHFRLPLLLRVSDKRVEPLPESEYSAPLRFQLADFAPRDNFVWVDRCYKMAQLWAPELALSTDWCVSQGQLGGQQIVQHVDKTTWKGKTAFKDTVIDMARYKGNVDTLKIVDNDIRYKADSFIFNVAGAPEEVKQFSGISRPESWGRWSNAQLGDEVKIEYKHPLPKKFDLVITAKAYGNNASRPIPVRVGNEEQTLVLGNEVTTTTLHFDNPTDADTLVIVPPEPVSTNEGNILGHSPRKLGIGMVEIKVVEREG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP040919_1	1.15\|985208\|33\|NZ_CP040919\|PILER-CR	985208-985240	33	NZ_CP040919.1	964493-964525	1	0.97
NZ_CP040919_1	1.35\|985209\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	985209-985240	32	NZ_CP040919.1	964493-964524	1	0.969

1. spacer 1.15|985208|33|NZ_CP040919|PILER-CR matches to position: 964493-964525, mismatch: 1, identity: 0.97

attccggctacttttgttgctccctgctcatcc	CRISPR spacer
attccagctacttttgttgctccctgctcatcc	Protospacer
*****.***************************

2. spacer 1.35|985209|32|NZ_CP040919|CRISPRCasFinder,CRT matches to position: 964493-964524, mismatch: 1, identity: 0.969

ttccggctacttttgttgctccctgctcatcc	CRISPR spacer
ttccagctacttttgttgctccctgctcatcc	Protospacer
****.***************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040919_4	4.1\|3007020\|40\|NZ_CP040919\|CRISPRCasFinder	3007020-3007059	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	0	1.0
NZ_CP040919_6	6.1\|4076693\|42\|NZ_CP040919\|PILER-CR	4076693-4076734	42	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141085-141126	1	0.976
NZ_CP040919_3	3.1\|2270840\|38\|NZ_CP040919\|CRISPRCasFinder	2270840-2270877	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_CP040919_6	6.2\|4076752\|40\|NZ_CP040919\|PILER-CR	4076752-4076791	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141028-141067	2	0.95
NZ_CP040919_2	2.23\|1011699\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011699-1011730	32	MF547662	Clostridioides phage LIBA6276, complete genome	37369-37400	4	0.875
NZ_CP040919_2	2.23\|1011699\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011699-1011730	32	MF547663	Clostridioides phage LIBA2945, complete genome	37369-37400	4	0.875
NZ_CP040919_2	2.1\|1011150\|33\|NZ_CP040919\|PILER-CR	1011150-1011182	33	LR597649	Escherichia phage ESSI2_ev015 genome assembly, chromosome: 1	17849-17881	5	0.848
NZ_CP040919_2	2.1\|1011150\|33\|NZ_CP040919\|PILER-CR	1011150-1011182	33	NC_049393	Escherichia phage ESSI2_ev040 genome assembly, chromosome: 1	17627-17659	5	0.848
NZ_CP040919_2	2.1\|1011150\|33\|NZ_CP040919\|PILER-CR	1011150-1011182	33	NC_049394	Escherichia phage ESSI2_ev129 genome assembly, chromosome: 1	17889-17921	5	0.848
NZ_CP040919_2	2.2\|1011211\|33\|NZ_CP040919\|PILER-CR	1011211-1011243	33	MK972713	Salmonella phage SW5, complete genome	27686-27718	5	0.848
NZ_CP040919_2	2.2\|1011211\|33\|NZ_CP040919\|PILER-CR	1011211-1011243	33	MK972714	Salmonella phage SW3, complete genome	27908-27940	5	0.848
NZ_CP040919_2	2.2\|1011211\|33\|NZ_CP040919\|PILER-CR	1011211-1011243	33	NC_049460	Salmonella phage SI7, complete genome	18128-18160	5	0.848
NZ_CP040919_2	2.10\|1011698\|33\|NZ_CP040919\|PILER-CR	1011698-1011730	33	MF547662	Clostridioides phage LIBA6276, complete genome	37368-37400	5	0.848
NZ_CP040919_2	2.10\|1011698\|33\|NZ_CP040919\|PILER-CR	1011698-1011730	33	MF547663	Clostridioides phage LIBA2945, complete genome	37368-37400	5	0.848
NZ_CP040919_2	2.15\|1011212\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011212-1011243	32	MK972713	Salmonella phage SW5, complete genome	27687-27718	5	0.844
NZ_CP040919_2	2.15\|1011212\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011212-1011243	32	MK972714	Salmonella phage SW3, complete genome	27909-27940	5	0.844
NZ_CP040919_2	2.15\|1011212\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011212-1011243	32	NC_049460	Salmonella phage SI7, complete genome	18129-18160	5	0.844
NZ_CP040919_2	2.23\|1011699\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011699-1011730	32	NZ_CP029155	Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence	83504-83535	5	0.844
NZ_CP040919_2	2.3\|1011272\|33\|NZ_CP040919\|PILER-CR	1011272-1011304	33	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	1167509-1167541	6	0.818
NZ_CP040919_2	2.16\|1011273\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011273-1011304	32	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	1203814-1203845	6	0.812
NZ_CP040919_2	2.16\|1011273\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011273-1011304	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	1167510-1167541	6	0.812
NZ_CP040919_1	1.24\|984536\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	984536-984567	32	NC_018022	Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence	373536-373567	7	0.781
NZ_CP040919_2	2.3\|1011272\|33\|NZ_CP040919\|PILER-CR	1011272-1011304	33	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	1203814-1203846	7	0.788
NZ_CP040919_2	2.3\|1011272\|33\|NZ_CP040919\|PILER-CR	1011272-1011304	33	NC_031109	Gordonia phage Jumbo, complete genome	25391-25423	7	0.788
NZ_CP040919_2	2.14\|1011151\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011151-1011182	32	LR597649	Escherichia phage ESSI2_ev015 genome assembly, chromosome: 1	17850-17881	7	0.781
NZ_CP040919_2	2.14\|1011151\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011151-1011182	32	NC_049393	Escherichia phage ESSI2_ev040 genome assembly, chromosome: 1	17628-17659	7	0.781
NZ_CP040919_2	2.14\|1011151\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011151-1011182	32	NC_049394	Escherichia phage ESSI2_ev129 genome assembly, chromosome: 1	17890-17921	7	0.781
NZ_CP040919_2	2.16\|1011273\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011273-1011304	32	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	1175642-1175673	7	0.781
NZ_CP040919_1	1.28\|984780\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	984780-984811	32	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	405764-405795	8	0.75
NZ_CP040919_1	1.28\|984780\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	984780-984811	32	NZ_CP053710	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed2, complete sequence	354033-354064	8	0.75
NZ_CP040919_1	1.28\|984780\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	984780-984811	32	NZ_CP053712	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed5, complete sequence	91487-91518	8	0.75
NZ_CP040919_1	1.29\|984841\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	984841-984872	32	NC_013085	Synechococcus phage S-RSM4, complete genome	75536-75567	8	0.75
NZ_CP040919_1	1.29\|984841\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	984841-984872	32	FM207411	Synechococcus phage S-RSM4 complete genome	75536-75567	8	0.75
NZ_CP040919_1	1.33\|985086\|33\|NZ_CP040919\|CRISPRCasFinder,CRT	985086-985118	33	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	413541-413573	8	0.758
NZ_CP040919_2	2.3\|1011272\|33\|NZ_CP040919\|PILER-CR	1011272-1011304	33	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	1175641-1175673	8	0.758
NZ_CP040919_2	2.6\|1011454\|33\|NZ_CP040919\|PILER-CR	1011454-1011486	33	MN694482	Marine virus AFVG_250M11, complete genome	1728-1760	8	0.758
NZ_CP040919_2	2.16\|1011273\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011273-1011304	32	NC_031109	Gordonia phage Jumbo, complete genome	25391-25422	8	0.75
NZ_CP040919_2	2.16\|1011273\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011273-1011304	32	NZ_CP050093	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence	398774-398805	8	0.75
NZ_CP040919_2	2.16\|1011273\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011273-1011304	32	NC_008384	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence	565533-565564	8	0.75
NZ_CP040919_2	2.16\|1011273\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011273-1011304	32	NZ_CP042332	Bosea sp. F3-2 plasmid pB32-1, complete sequence	63515-63546	8	0.75
NZ_CP040919_2	2.16\|1011273\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011273-1011304	32	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	350647-350678	8	0.75
NZ_CP040919_2	2.17\|1011334\|31\|NZ_CP040919\|CRISPRCasFinder,CRT	1011334-1011364	31	CP022610	Escherichia coli strain ATCC 700415 plasmid unnamed, complete sequence	10542-10572	8	0.742
NZ_CP040919_2	2.18\|1011394\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011394-1011425	32	NZ_CP024236	Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence	57083-57114	8	0.75
NZ_CP040919_2	2.19\|1011455\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011455-1011486	32	MN694482	Marine virus AFVG_250M11, complete genome	1728-1759	8	0.75
NZ_CP040919_2	2.21\|1011577\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011577-1011608	32	NZ_CP008818	Ochrobactrum anthropi strain OAB plasmid 2, complete sequence	52227-52258	8	0.75
NZ_CP040919_2	2.21\|1011577\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011577-1011608	32	NC_009671	Ochrobactrum anthropi ATCC 49188 plasmid pOANT03, complete sequence	23638-23669	8	0.75
NZ_CP040919_1	1.13\|985085\|34\|NZ_CP040919\|PILER-CR	985085-985118	34	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	413540-413573	9	0.735
NZ_CP040919_1	1.28\|984780\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	984780-984811	32	JX469828	Uncultured bacterium plasmid pRSB223, complete sequence	47585-47616	9	0.719
NZ_CP040919_1	1.28\|984780\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	984780-984811	32	JX469829	Uncultured bacterium plasmid pB1, complete sequence	23183-23214	9	0.719
NZ_CP040919_1	1.28\|984780\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	984780-984811	32	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	393203-393234	9	0.719
NZ_CP040919_1	1.28\|984780\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	984780-984811	32	NC_008766	Acidovorax sp. JS42 plasmid pAOVO02, complete sequence	3158-3189	9	0.719
NZ_CP040919_1	1.28\|984780\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	984780-984811	32	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	569059-569090	9	0.719
NZ_CP040919_1	1.28\|984780\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	984780-984811	32	NZ_MN366361	Bacterium plasmid pALTS33, complete sequence	54575-54606	9	0.719
NZ_CP040919_1	1.30\|984902\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	984902-984933	32	MW084976	Bacillus phage Kirov, complete genome	56770-56801	9	0.719
NZ_CP040919_1	1.36\|985270\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	985270-985301	32	NZ_CP016721	Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11B, complete sequence	30466-30497	9	0.719
NZ_CP040919_1	1.36\|985270\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	985270-985301	32	NZ_CP016727	Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08B, complete sequence	30464-30495	9	0.719
NZ_CP040919_1	1.39\|985453\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	985453-985484	32	MK448690	Streptococcus phage Javan169, complete genome	9831-9862	9	0.719
NZ_CP040919_1	1.39\|985453\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	985453-985484	32	MK448854	Streptococcus phage Javan146, complete genome	11811-11842	9	0.719
NZ_CP040919_2	2.3\|1011272\|33\|NZ_CP040919\|PILER-CR	1011272-1011304	33	NZ_CP042332	Bosea sp. F3-2 plasmid pB32-1, complete sequence	63515-63547	9	0.727
NZ_CP040919_2	2.3\|1011272\|33\|NZ_CP040919\|PILER-CR	1011272-1011304	33	NZ_CP050093	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence	398773-398805	9	0.727
NZ_CP040919_2	2.3\|1011272\|33\|NZ_CP040919\|PILER-CR	1011272-1011304	33	NZ_CP017077	Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence	555185-555217	9	0.727
NZ_CP040919_2	2.3\|1011272\|33\|NZ_CP040919\|PILER-CR	1011272-1011304	33	NC_008384	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence	565532-565564	9	0.727
NZ_CP040919_2	2.4\|1011333\|32\|NZ_CP040919\|PILER-CR	1011333-1011364	32	CP022610	Escherichia coli strain ATCC 700415 plasmid unnamed, complete sequence	10541-10572	9	0.719
NZ_CP040919_2	2.9\|1011637\|33\|NZ_CP040919\|PILER-CR	1011637-1011669	33	MN812211	Flavobacterium phage vB_FspS_laban6-1, complete genome	21752-21784	9	0.727
NZ_CP040919_2	2.16\|1011273\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011273-1011304	32	NZ_CP017077	Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence	555186-555217	9	0.719
NZ_CP040919_2	2.16\|1011273\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011273-1011304	32	NZ_CP040819	Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence	471692-471723	9	0.719
NZ_CP040919_2	2.18\|1011394\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011394-1011425	32	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	137043-137074	9	0.719
NZ_CP040919_2	2.20\|1011516\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011516-1011547	32	MT446414	UNVERIFIED: Escherichia virus TH43, complete genome	38100-38131	9	0.719
NZ_CP040919_2	2.22\|1011638\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011638-1011669	32	MN812211	Flavobacterium phage vB_FspS_laban6-1, complete genome	21752-21783	9	0.719
NZ_CP040919_2	2.22\|1011638\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011638-1011669	32	NZ_CP012534	Psychrobacter sp. P11G5 plasmid pPspP11G5a, complete sequence	26937-26968	9	0.719
NZ_CP040919_2	2.23\|1011699\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011699-1011730	32	MN693584	Marine virus AFVG_25M163, complete genome	29591-29622	9	0.719
NZ_CP040919_2	2.23\|1011699\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011699-1011730	32	MN103543	Pseudomonas phage vB_PaeM_PS119XW, complete genome	258501-258532	9	0.719
NZ_CP040919_2	2.23\|1011699\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011699-1011730	32	MK599315	Pseudomonas phage PA1C, complete genome	257887-257918	9	0.719
NZ_CP040919_5	5.1\|3140097\|32\|NZ_CP040919\|CRISPRCasFinder	3140097-3140128	32	NZ_CP045060	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence	9736-9767	9	0.719
NZ_CP040919_5	5.1\|3140097\|32\|NZ_CP040919\|CRISPRCasFinder	3140097-3140128	32	NZ_CP045053	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence	9737-9768	9	0.719
NZ_CP040919_5	5.1\|3140097\|32\|NZ_CP040919\|CRISPRCasFinder	3140097-3140128	32	NZ_CP045057	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence	9736-9767	9	0.719
NZ_CP040919_5	5.3\|3140105\|32\|NZ_CP040919\|PILER-CR	3140105-3140136	32	NZ_CP045060	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence	9736-9767	9	0.719
NZ_CP040919_5	5.3\|3140105\|32\|NZ_CP040919\|PILER-CR	3140105-3140136	32	NZ_CP045053	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence	9737-9768	9	0.719
NZ_CP040919_5	5.3\|3140105\|32\|NZ_CP040919\|PILER-CR	3140105-3140136	32	NZ_CP045057	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence	9736-9767	9	0.719
NZ_CP040919_1	1.28\|984780\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	984780-984811	32	NC_004929	Ruegeria sp. PR1b plasmid pSD20, complete sequence	67373-67404	10	0.688
NZ_CP040919_2	2.3\|1011272\|33\|NZ_CP040919\|PILER-CR	1011272-1011304	33	NZ_CP040819	Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence	471692-471724	10	0.697
NZ_CP040919_2	2.10\|1011698\|33\|NZ_CP040919\|PILER-CR	1011698-1011730	33	MN693584	Marine virus AFVG_25M163, complete genome	29590-29622	10	0.697
NZ_CP040919_2	2.22\|1011638\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011638-1011669	32	NZ_KX711616	Bacillus subtilis strain 72 plasmid pBS72, complete sequence	1474-1505	10	0.688
NZ_CP040919_2	2.22\|1011638\|32\|NZ_CP040919\|CRISPRCasFinder,CRT	1011638-1011669	32	NC_023026	Francisella novicida strain PA10-7858 plasmid pFNPA10, complete sequence	2981-3012	11	0.656

1. spacer 4.1|3007020|40|NZ_CP040919|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 6.1|4076693|42|NZ_CP040919|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.976

tgtcacacgcagataaatccaactttcaatattgttaagctc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
***************************************.**

3. spacer 3.1|2270840|38|NZ_CP040919|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

4. spacer 6.2|4076752|40|NZ_CP040919|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 2, identity: 0.95

catggcgtagcaaaaagaaattttcaatattgttttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
********** *********************.*******

5. spacer 2.23|1011699|32|NZ_CP040919|CRISPRCasFinder,CRT matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 4, identity: 0.875

tacagtttccataaattcacctcgtttatata-	CRISPR spacer
tactgtttccataaattcacctc-cttataaaa	Protospacer
*** ******************* .***** *

6. spacer 2.23|1011699|32|NZ_CP040919|CRISPRCasFinder,CRT matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 4, identity: 0.875

tacagtttccataaattcacctcgtttatata-	CRISPR spacer
tactgtttccataaattcacctc-cttataaaa	Protospacer
*** ******************* .***** *

7. spacer 2.1|1011150|33|NZ_CP040919|PILER-CR matches to LR597649 (Escherichia phage ESSI2_ev015 genome assembly, chromosome: 1) position: , mismatch: 5, identity: 0.848

gcaaacg-tcaggcggaagtgttccggtcatata	CRISPR spacer
-caaaggctcaggctgaagtgttccggtcttaca	Protospacer
 **** * ****** ************** **.*

8. spacer 2.1|1011150|33|NZ_CP040919|PILER-CR matches to NC_049393 (Escherichia phage ESSI2_ev040 genome assembly, chromosome: 1) position: , mismatch: 5, identity: 0.848

gcaaacg-tcaggcggaagtgttccggtcatata	CRISPR spacer
-caaaggctcaggctgaagtgttccggtcttaca	Protospacer
 **** * ****** ************** **.*

9. spacer 2.1|1011150|33|NZ_CP040919|PILER-CR matches to NC_049394 (Escherichia phage ESSI2_ev129 genome assembly, chromosome: 1) position: , mismatch: 5, identity: 0.848

gcaaacg-tcaggcggaagtgttccggtcatata	CRISPR spacer
-caaaggctcaggctgaagtgttccggtcttaca	Protospacer
 **** * ****** ************** **.*

10. spacer 2.2|1011211|33|NZ_CP040919|PILER-CR matches to MK972713 (Salmonella phage SW5, complete genome) position: , mismatch: 5, identity: 0.848

ggaccagtcgggccagacatcggggacgcagaa	CRISPR spacer
ggaccagtcgggccagacatcgagcacggccaa	Protospacer
**********************.* ***   **

11. spacer 2.2|1011211|33|NZ_CP040919|PILER-CR matches to MK972714 (Salmonella phage SW3, complete genome) position: , mismatch: 5, identity: 0.848

ggaccagtcgggccagacatcggggacgcagaa	CRISPR spacer
ggaccagtcgggccagacatcgagcacggccaa	Protospacer
**********************.* ***   **

12. spacer 2.2|1011211|33|NZ_CP040919|PILER-CR matches to NC_049460 (Salmonella phage SI7, complete genome) position: , mismatch: 5, identity: 0.848

ggaccagtcgggccagacatcggggacgcagaa	CRISPR spacer
ggaccagtcgggccagacatcgagcacggccaa	Protospacer
**********************.* ***   **

13. spacer 2.10|1011698|33|NZ_CP040919|PILER-CR matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 5, identity: 0.848

gtacagtttccataaattcacctcgtttatata-	CRISPR spacer
ctactgtttccataaattcacctc-cttataaaa	Protospacer
 *** ******************* .***** *

14. spacer 2.10|1011698|33|NZ_CP040919|PILER-CR matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 5, identity: 0.848

gtacagtttccataaattcacctcgtttatata-	CRISPR spacer
ctactgtttccataaattcacctc-cttataaaa	Protospacer
 *** ******************* .***** *

15. spacer 2.15|1011212|32|NZ_CP040919|CRISPRCasFinder,CRT matches to MK972713 (Salmonella phage SW5, complete genome) position: , mismatch: 5, identity: 0.844

gaccagtcgggccagacatcggggacgcagaa	CRISPR spacer
gaccagtcgggccagacatcgagcacggccaa	Protospacer
*********************.* ***   **

16. spacer 2.15|1011212|32|NZ_CP040919|CRISPRCasFinder,CRT matches to MK972714 (Salmonella phage SW3, complete genome) position: , mismatch: 5, identity: 0.844

gaccagtcgggccagacatcggggacgcagaa	CRISPR spacer
gaccagtcgggccagacatcgagcacggccaa	Protospacer
*********************.* ***   **

17. spacer 2.15|1011212|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NC_049460 (Salmonella phage SI7, complete genome) position: , mismatch: 5, identity: 0.844

gaccagtcgggccagacatcggggacgcagaa	CRISPR spacer
gaccagtcgggccagacatcgagcacggccaa	Protospacer
*********************.* ***   **

18. spacer 2.23|1011699|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NZ_CP029155 (Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.844

tacagtttccataaattcacctcgtttatata-	CRISPR spacer
tactgtttccataaattcacctc-cctataaaa	Protospacer
*** ******************* ..**** *

19. spacer 2.3|1011272|33|NZ_CP040919|PILER-CR matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 6, identity: 0.818

gccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
ggcgttcgccatcgcgcatttcgtccatcgttg	Protospacer
* ** .******************* * ***.*

20. spacer 2.16|1011273|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 6, identity: 0.812

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
cacgcggccatcgcgcagttcgtcgaacgccg	Protospacer
*  .* *********** ***********.**

21. spacer 2.16|1011273|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 6, identity: 0.812

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
gcgttcgccatcgcgcatttcgtccatcgttg	Protospacer
 ** .******************* * ***.*

22. spacer 1.24|984536|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NC_018022 (Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence) position: , mismatch: 7, identity: 0.781

aatggcgctgccgatcgacaaatgggacctgg-	CRISPR spacer
gatggcgatgccgatggacaaat-gcacatgct	Protospacer
.****** ******* ******* * ** **

23. spacer 2.3|1011272|33|NZ_CP040919|PILER-CR matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 7, identity: 0.788

gccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
tcacgcggccatcgcgcagttcgtcgaacgccg	Protospacer
 *  .* *********** ***********.**

24. spacer 2.3|1011272|33|NZ_CP040919|PILER-CR matches to NC_031109 (Gordonia phage Jumbo, complete genome) position: , mismatch: 7, identity: 0.788

gccgac--cgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
--tgacaataccatcgcggattttgtcgaacgtcg	Protospacer
  .***  ..******** ****.***********

25. spacer 2.14|1011151|32|NZ_CP040919|CRISPRCasFinder,CRT matches to LR597649 (Escherichia phage ESSI2_ev015 genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.781

caaacgtcaggcggaagtgttccggtcatata	CRISPR spacer
aaaggctcaggctgaagtgttccggtcttaca	Protospacer
 **.  ****** ************** **.*

26. spacer 2.14|1011151|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NC_049393 (Escherichia phage ESSI2_ev040 genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.781

caaacgtcaggcggaagtgttccggtcatata	CRISPR spacer
aaaggctcaggctgaagtgttccggtcttaca	Protospacer
 **.  ****** ************** **.*

27. spacer 2.14|1011151|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NC_049394 (Escherichia phage ESSI2_ev129 genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.781

caaacgtcaggcggaagtgttccggtcatata	CRISPR spacer
aaaggctcaggctgaagtgttccggtcttaca	Protospacer
 **.  ****** ************** **.*

28. spacer 2.16|1011273|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 7, identity: 0.781

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
gcgttcgccatcgcgcatttcgtccatcgctg	Protospacer
 ** .******************* * **..*

29. spacer 1.28|984780|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ccccgccagcgccccgcgcgcctgcttcgtcc	Protospacer
*** ********** ******** .** ..*.

30. spacer 1.28|984780|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NZ_CP053710 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ccccgccagcgccccgcgcgcctgcttcgtcc	Protospacer
*** ********** ******** .** ..*.

31. spacer 1.28|984780|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NZ_CP053712 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.75

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ccccgccagcgccccgcgcgcctgcttcgtcc	Protospacer
*** ********** ******** .** ..*.

32. spacer 1.29|984841|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NC_013085 (Synechococcus phage S-RSM4, complete genome) position: , mismatch: 8, identity: 0.75

-----tccttaattacaacgacaccactggaaaaatt	CRISPR spacer
gtagctcc-----tacaacgacagcattggaaaaatc	Protospacer
     ***     ********** **.*********.

33. spacer 1.29|984841|32|NZ_CP040919|CRISPRCasFinder,CRT matches to FM207411 (Synechococcus phage S-RSM4 complete genome) position: , mismatch: 8, identity: 0.75

-----tccttaattacaacgacaccactggaaaaatt	CRISPR spacer
gtagctcc-----tacaacgacagcattggaaaaatc	Protospacer
     ***     ********** **.*********.

34. spacer 1.33|985086|33|NZ_CP040919|CRISPRCasFinder,CRT matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 8, identity: 0.758

cgggagccagtgctaacgatatcgcggccgcgc	CRISPR spacer
ggcgcggcagcgcgaacgatatcgcggccgccg	Protospacer
 * * * ***.** *****************

35. spacer 2.3|1011272|33|NZ_CP040919|PILER-CR matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 8, identity: 0.758

gccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
cgcgttcgccatcgcgcatttcgtccatcgctg	Protospacer
  ** .******************* * **..*

36. spacer 2.6|1011454|33|NZ_CP040919|PILER-CR matches to MN694482 (Marine virus AFVG_250M11, complete genome) position: , mismatch: 8, identity: 0.758

gtcatgaaggcttcgattatttcttgatacctg	CRISPR spacer
gtcattaaggcttcgattttttctagtttagtt	Protospacer
***** ************ ***** * *   *

37. spacer 2.16|1011273|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NC_031109 (Gordonia phage Jumbo, complete genome) position: , mismatch: 8, identity: 0.75

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
gacaataccatcgcggattttgtcgaacgtcg	Protospacer
   * ..******** ****.***********

38. spacer 2.16|1011273|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NZ_CP050093 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence) position: , mismatch: 8, identity: 0.75

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
tctgacggcatcgcgcatttcggcgaacgcct	Protospacer
.* . ** ************** ******.*

39. spacer 2.16|1011273|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NC_008384 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence) position: , mismatch: 8, identity: 0.75

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
tctgacggcatcgcgcatttcggcgaacgcct	Protospacer
.* . ** ************** ******.*

40. spacer 2.16|1011273|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NZ_CP042332 (Bosea sp. F3-2 plasmid pB32-1, complete sequence) position: , mismatch: 8, identity: 0.75

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
cacgacgccgtcgcgcatttcgtcgaccgcct	Protospacer
*  . ****.**************** **.*

41. spacer 2.16|1011273|32|NZ_CP040919|CRISPRCasFinder,CRT matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 8, identity: 0.75

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
gccgccgccatcgcgcaattcggcgaatatgg	Protospacer
 * .************* **** ****..* *

42. spacer 2.17|1011334|31|NZ_CP040919|CRISPRCasFinder,CRT matches to CP022610 (Escherichia coli strain ATCC 700415 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

caaaaaataatatccggcagtctgtacggta	CRISPR spacer
agaaaaatcatatccggcagtctttagcgag	Protospacer
 .****** ************** **  * .

43. spacer 2.18|1011394|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NZ_CP024236 (Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

-caacattttccaatatcacccagcaatcaatt	CRISPR spacer
gtaac-ttttctaatatcacccagcactccggg	Protospacer
 .*** *****.************** ** .

44. spacer 2.19|1011455|32|NZ_CP040919|CRISPRCasFinder,CRT matches to MN694482 (Marine virus AFVG_250M11, complete genome) position: , mismatch: 8, identity: 0.75

tcatgaaggcttcgattatttcttgatacctg	CRISPR spacer
tcattaaggcttcgattttttctagtttagtt	Protospacer
**** ************ ***** * *   *

45. spacer 2.21|1011577|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NZ_CP008818 (Ochrobactrum anthropi strain OAB plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.75

-caataacaccggcatttgtccacgacaatatt	CRISPR spacer
tcggcgacg-cggcatttgtccacgacacaatt	Protospacer
 *....**. ******************  ***

46. spacer 2.21|1011577|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NC_009671 (Ochrobactrum anthropi ATCC 49188 plasmid pOANT03, complete sequence) position: , mismatch: 8, identity: 0.75

-caataacaccggcatttgtccacgacaatatt	CRISPR spacer
tcggcgacg-cggcatttgtccacgacacaatt	Protospacer
 *....**. ******************  ***

47. spacer 1.13|985085|34|NZ_CP040919|PILER-CR matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 9, identity: 0.735

gcgggagccagtgctaacgatatcgcggccgcgc	CRISPR spacer
cggcgcggcagcgcgaacgatatcgcggccgccg	Protospacer
  * * * ***.** *****************

48. spacer 1.28|984780|32|NZ_CP040919|CRISPRCasFinder,CRT matches to JX469828 (Uncultured bacterium plasmid pRSB223, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ggcctccagcgccttgcgcgcctctttagcgg	Protospacer
  *  ********. *************.*

49. spacer 1.28|984780|32|NZ_CP040919|CRISPRCasFinder,CRT matches to JX469829 (Uncultured bacterium plasmid pB1, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ggcctccagcgccttgcgcgcctctttagcgg	Protospacer
  *  ********. *************.*

50. spacer 1.28|984780|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
gccgggcagcgcccggcgcgcctcagccatca	Protospacer
 **.* ******************  . *.*

51. spacer 1.28|984780|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NC_008766 (Acidovorax sp. JS42 plasmid pAOVO02, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ggcctccagcgccttgcgcgcctctttagcgg	Protospacer
  *  ********. *************.*

52. spacer 1.28|984780|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
cggagcccgcgcccggcgcgccgcttcacatg	Protospacer
*  **** ************** ***.*  .

53. spacer 1.28|984780|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NZ_MN366361 (Bacterium plasmid pALTS33, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ggcctccagcgccttgcgcgcctctttagcgg	Protospacer
  *  ********. *************.*

54. spacer 1.30|984902|32|NZ_CP040919|CRISPRCasFinder,CRT matches to MW084976 (Bacillus phage Kirov, complete genome) position: , mismatch: 9, identity: 0.719

ttcgccaggtgttttcttttcccggtcagtca	CRISPR spacer
aattccaagtgttttcttttcccagtctataa	Protospacer
  . ***.***************.*** .* *

55. spacer 1.36|985270|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NZ_CP016721 (Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11B, complete sequence) position: , mismatch: 9, identity: 0.719

aatatttacttggatgcgtcggacattgaatc	CRISPR spacer
tttcatgacttgaatgcgtaggacattgaaag	Protospacer
  *  * *****.****** **********

56. spacer 1.36|985270|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NZ_CP016727 (Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08B, complete sequence) position: , mismatch: 9, identity: 0.719

aatatttacttggatgcgtcggacattgaatc	CRISPR spacer
tttcatgacttgaatgcgtaggacattgaaag	Protospacer
  *  * *****.****** **********

57. spacer 1.39|985453|32|NZ_CP040919|CRISPRCasFinder,CRT matches to MK448690 (Streptococcus phage Javan169, complete genome) position: , mismatch: 9, identity: 0.719

tcaacgaaaacgcagagcgaggaacggatatt	CRISPR spacer
aagagcaaaacggagagcgagaaacggatttc	Protospacer
  .*  ****** ********.******* *.

58. spacer 1.39|985453|32|NZ_CP040919|CRISPRCasFinder,CRT matches to MK448854 (Streptococcus phage Javan146, complete genome) position: , mismatch: 9, identity: 0.719

tcaacgaaaacgcagagcgaggaacggatatt	CRISPR spacer
aagagcaaaacggagagcgagaaacggatttc	Protospacer
  .*  ****** ********.******* *.

59. spacer 2.3|1011272|33|NZ_CP040919|PILER-CR matches to NZ_CP042332 (Bosea sp. F3-2 plasmid pB32-1, complete sequence) position: , mismatch: 9, identity: 0.727

gccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
acacgacgccgtcgcgcatttcgtcgaccgcct	Protospacer
.*  . ****.**************** **.*

60. spacer 2.3|1011272|33|NZ_CP040919|PILER-CR matches to NZ_CP050093 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence) position: , mismatch: 9, identity: 0.727

gccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
ctctgacggcatcgcgcatttcggcgaacgcct	Protospacer
 .* . ** ************** ******.*

61. spacer 2.3|1011272|33|NZ_CP040919|PILER-CR matches to NZ_CP017077 (Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence) position: , mismatch: 9, identity: 0.727

gccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
gtcgaccggcatcgcgcagttcgtcgctgagag	Protospacer
*.****** ********* *******   .  *

62. spacer 2.3|1011272|33|NZ_CP040919|PILER-CR matches to NC_008384 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence) position: , mismatch: 9, identity: 0.727

gccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
ctctgacggcatcgcgcatttcggcgaacgcct	Protospacer
 .* . ** ************** ******.*

63. spacer 2.4|1011333|32|NZ_CP040919|PILER-CR matches to CP022610 (Escherichia coli strain ATCC 700415 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

gcaaaaaataatatccggcagtctgtacggta	CRISPR spacer
aagaaaaatcatatccggcagtctttagcgag	Protospacer
. .****** ************** **  * .

64. spacer 2.9|1011637|33|NZ_CP040919|PILER-CR matches to MN812211 (Flavobacterium phage vB_FspS_laban6-1, complete genome) position: , mismatch: 9, identity: 0.727

agcgtaagaaaacaattttttcagaaaactaac	CRISPR spacer
aaaataagaaaacaattttttcttaaaaaagat	Protospacer
*. .******************  ****  .*.

65. spacer 2.16|1011273|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NZ_CP017077 (Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
tcgaccggcatcgcgcagttcgtcgctgagag	Protospacer
.****** ********* *******   .  *

66. spacer 2.16|1011273|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NZ_CP040819 (Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
gagaccggcatcgcgcatttcctcgagcacat	Protospacer
  ***** ************* ****.*..

67. spacer 2.18|1011394|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caacattttccaatatcacccagcaatcaatt	CRISPR spacer
gattgccttccaatatcagccagctatcaaat	Protospacer
 * ....*********** ***** ***** *

68. spacer 2.20|1011516|32|NZ_CP040919|CRISPRCasFinder,CRT matches to MT446414 (UNVERIFIED: Escherichia virus TH43, complete genome) position: , mismatch: 9, identity: 0.719

atttcattaattttgcagagaagtgtctcgaa	CRISPR spacer
atttcatcaactttgcagagaaggaaatttat	Protospacer
*******.**.************ .  *. *

69. spacer 2.22|1011638|32|NZ_CP040919|CRISPRCasFinder,CRT matches to MN812211 (Flavobacterium phage vB_FspS_laban6-1, complete genome) position: , mismatch: 9, identity: 0.719

gcgtaagaaaacaattttttcagaaaactaac	CRISPR spacer
aaataagaaaacaattttttcttaaaaaagat	Protospacer
. .******************  ****  .*.

70. spacer 2.22|1011638|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NZ_CP012534 (Psychrobacter sp. P11G5 plasmid pPspP11G5a, complete sequence) position: , mismatch: 9, identity: 0.719

gcgtaagaaaacaattttttcag---aaaactaac	CRISPR spacer
gcgtaagaaaacagtttttccagttccagatg---	Protospacer
*************.*****.***    *.*.

71. spacer 2.23|1011699|32|NZ_CP040919|CRISPRCasFinder,CRT matches to MN693584 (Marine virus AFVG_25M163, complete genome) position: , mismatch: 9, identity: 0.719

tacagtttccataaattcacctcgtttatata	CRISPR spacer
ggggatatctataaactcacctcgtttatatt	Protospacer
 . ..* **.*****.***************

72. spacer 2.23|1011699|32|NZ_CP040919|CRISPRCasFinder,CRT matches to MN103543 (Pseudomonas phage vB_PaeM_PS119XW, complete genome) position: , mismatch: 9, identity: 0.719

tacagtttccataaattcacctcgtttatata	CRISPR spacer
cgcttcttccatacattcacctcggttatgga	Protospacer
..*  .******* ********** ****. *

73. spacer 2.23|1011699|32|NZ_CP040919|CRISPRCasFinder,CRT matches to MK599315 (Pseudomonas phage PA1C, complete genome) position: , mismatch: 9, identity: 0.719

tacagtttccataaattcacctcgtttatata	CRISPR spacer
cgcttcttccatacattcacctcggttatgga	Protospacer
..*  .******* ********** ****. *

74. spacer 5.1|3140097|32|NZ_CP040919|CRISPRCasFinder matches to NZ_CP045060 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

75. spacer 5.1|3140097|32|NZ_CP040919|CRISPRCasFinder matches to NZ_CP045053 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

76. spacer 5.1|3140097|32|NZ_CP040919|CRISPRCasFinder matches to NZ_CP045057 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

77. spacer 5.3|3140105|32|NZ_CP040919|PILER-CR matches to NZ_CP045060 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

78. spacer 5.3|3140105|32|NZ_CP040919|PILER-CR matches to NZ_CP045053 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

79. spacer 5.3|3140105|32|NZ_CP040919|PILER-CR matches to NZ_CP045057 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

80. spacer 1.28|984780|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NC_004929 (Ruegeria sp. PR1b plasmid pSD20, complete sequence) position: , mismatch: 10, identity: 0.688

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ccccgcctgcgcccggcgcgcctgccagaggg	Protospacer
*** *** *************** .. .*

81. spacer 2.3|1011272|33|NZ_CP040919|PILER-CR matches to NZ_CP040819 (Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence) position: , mismatch: 10, identity: 0.697

gccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
cgagaccggcatcgcgcatttcctcgagcacat	Protospacer
   ***** ************* ****.*..

82. spacer 2.10|1011698|33|NZ_CP040919|PILER-CR matches to MN693584 (Marine virus AFVG_25M163, complete genome) position: , mismatch: 10, identity: 0.697

gtacagtttccataaattcacctcgtttatata	CRISPR spacer
aggggatatctataaactcacctcgtttatatt	Protospacer
. . ..* **.*****.***************

83. spacer 2.22|1011638|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NZ_KX711616 (Bacillus subtilis strain 72 plasmid pBS72, complete sequence) position: , mismatch: 10, identity: 0.688

gcgtaagaaaacaattttttcagaaaactaac	CRISPR spacer
gacaaagaaaacaatcttttaagaaaagcttt	Protospacer
*   ***********.**** ****** .  .

84. spacer 2.22|1011638|32|NZ_CP040919|CRISPRCasFinder,CRT matches to NC_023026 (Francisella novicida strain PA10-7858 plasmid pFNPA10, complete sequence) position: , mismatch: 11, identity: 0.656

gcgtaagaaaacaattttttcagaaaactaac	CRISPR spacer
acgaaagaaaacaactttttcagagtggcgtt	Protospacer
.** **********.*********. . .. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1245898 : 1285779

Escherichia_phage(61.9%)

integrase,tail,terminase

attL 1245116:1245131|attR 1250587:1250602

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1245116:1245131	attL	NA	NA	NA	NA
WP_001299507.1\|1245898_1247365_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	2.3e-88	39.1
WP_000138270.1\|1247433_1249011_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_001567237.1\|1249203_1250454_+\|integrase	site-specific integrase	A0A0F6TJM5	Escherichia_coli_O157_typing_phage	3.6e-239	99.3
WP_140027998.1\|1250485_1251205_-	ORF6N domain-containing protein	G9L689	Escherichia_phage	1.4e-46	67.4
1250587:1250602	attR	NA	NA	NA	NA
WP_001555198.1\|1251841_1252090_-	hypothetical protein	NA	NA	NA	NA
WP_059327372.1\|1252086_1252737_-	adenine methylase	A0A2R9YJG0	Escherichia_phage	1.9e-127	99.5
WP_140028046.1\|1252729_1252981_-	PerC family transcriptional regulator	G9L6A0	Escherichia_phage	3.4e-40	98.8
WP_000675390.1\|1253138_1253387_-	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	3.6e-42	100.0
WP_140027999.1\|1253436_1254354_-	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	1.7e-68	49.3
WP_042067880.1\|1254350_1255172_-	exodeoxyribonuclease VIII	G9L6A3	Escherichia_phage	6.1e-163	98.9
WP_001102250.1\|1255168_1255468_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	3.2e-45	94.9
WP_000836290.1\|1255776_1256361_-	helix-turn-helix transcriptional regulator	A0A0F6R8L7	Escherichia_coli_O157_typing_phage	7.0e-105	100.0
WP_001282459.1\|1256515_1256746_+	hypothetical protein	G9L6A7	Escherichia_phage	2.6e-39	100.0
WP_000402896.1\|1256896_1257097_+	hypothetical protein	A0A0F6TJB7	Escherichia_coli_O157_typing_phage	1.0e-31	98.5
WP_000086417.1\|1257112_1257928_+	primosomal protein	Q286X4	Escherichia_phage	1.7e-117	95.6
WP_001406039.1\|1257924_1258710_+	hypothetical protein	A0A0F6TJ71	Escherichia_coli_O157_typing_phage	9.3e-153	100.0
WP_016235747.1\|1258827_1259172_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	8.2e-61	97.4
WP_140028000.1\|1259233_1259671_+	hypothetical protein	A0A2I6TCH0	Escherichia_phage	8.0e-29	63.7
WP_023910398.1\|1259667_1259967_+	hypothetical protein	G8C7K8	Escherichia_phage	4.3e-58	99.0
WP_135107868.1\|1259968_1260583_+	ead/Ea22-like family protein	K7P6J7	Enterobacteria_phage	6.3e-80	69.2
WP_000797279.1\|1260928_1261117_+	hypothetical protein	A0A1I9LJM4	Stx_converting_phage	1.4e-30	98.4
WP_122648061.1\|1261290_1261554_+	hypothetical protein	NA	NA	NA	NA
WP_140028001.1\|1261630_1262389_+	DUF551 domain-containing protein	A0A077SK54	Escherichia_phage	5.1e-55	48.1
WP_128767313.1\|1262503_1262842_+	hypothetical protein	A0A0F6TJR3	Escherichia_coli_O157_typing_phage	4.1e-49	85.7
WP_024166494.1\|1262882_1263593_+\|terminase	terminase small subunit	Q287B7	Escherichia_phage	1.0e-105	85.2
WP_021517653.1\|1263589_1265065_+	hypothetical protein	A0A0F6TK57	Escherichia_coli_O157_typing_phage	1.3e-296	99.4
WP_000848286.1\|1265108_1265531_-	hypothetical protein	NA	NA	NA	NA
WP_000335899.1\|1266233_1266440_+	hypothetical protein	G9L6C1	Escherichia_phage	6.0e-11	100.0
WP_128767312.1\|1266454_1268134_+\|tail	phage tail protein	G9L6C2	Escherichia_phage	2.3e-302	99.3
WP_000133160.1\|1268130_1268427_+	hypothetical protein	G9L6C3	Escherichia_phage	1.3e-46	100.0
WP_042970478.1\|1268429_1269125_+	peptidase	G9L6C4	Escherichia_phage	6.0e-95	99.6
WP_135107833.1\|1270177_1270615_+	hypothetical protein	A0A0F6R7N9	Escherichia_coli_O157_typing_phage	6.5e-71	95.9
WP_000012377.1\|1270625_1270961_+	hypothetical protein	G9L6C7	Escherichia_phage	7.7e-56	100.0
WP_000179260.1\|1271017_1271623_+	hypothetical protein	G9L6C9	Escherichia_phage	2.8e-112	100.0
WP_096932100.1\|1271622_1274094_+	hypothetical protein	G9L6D0	Escherichia_phage	0.0e+00	99.1
WP_001555171.1\|1274093_1274558_+	hypothetical protein	G9L6D1	Escherichia_phage	2.4e-84	99.4
WP_000332877.1\|1274557_1275133_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	7.0e-81	95.3
WP_062864961.1\|1275132_1277850_+	transglycosylase SLT domain-containing protein	G9L6D3	Escherichia_phage	0.0e+00	99.4
WP_062864960.1\|1277849_1280864_+	hypothetical protein	G9L6D4	Escherichia_phage	0.0e+00	99.4
WP_062864959.1\|1280875_1281439_-	hypothetical protein	G9L6D5	Escherichia_phage	9.8e-96	96.3
WP_062864958.1\|1281533_1281965_-	Arc family DNA-binding protein	G9L6D6	Escherichia_phage	2.1e-58	99.1
WP_064768927.1\|1282085_1282253_+	hypothetical protein	G9L6D7	Escherichia_phage	3.0e-24	98.2
WP_062864957.1\|1282325_1283264_+	antirepressor	G9L6D8	Escherichia_phage	8.2e-164	91.1
WP_000708858.1\|1283337_1283499_-	hypothetical protein	G9L6D9	Escherichia_phage	2.5e-20	100.0
WP_001154803.1\|1283592_1284141_-	DUF2335 domain-containing protein	NA	NA	NA	NA
WP_001609225.1\|1284067_1284394_-	hypothetical protein	NA	NA	NA	NA
WP_032152017.1\|1284515_1285208_-	hypothetical protein	G9L6E2	Escherichia_phage	1.7e-97	80.2
WP_110221350.1\|1285253_1285340_-	hypothetical protein	NA	NA	NA	NA
WP_087598103.1\|1285521_1285779_-	hypothetical protein	A0A0F6R8M4	Escherichia_coli_O157_typing_phage	3.7e-42	97.6

DBSCAN-SWA_2

1288822 : 1292396

Escherichia_phage(85.71%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109866943.1\|1288822_1289227_+	hypothetical protein	G9L6E6	Escherichia_phage	1.0e-62	97.0
WP_000256105.1\|1289213_1289522_+\|holin	phage holin family protein	G9L6E7	Escherichia_phage	4.2e-48	96.1
WP_115760333.1\|1289511_1290141_+	glycoside hydrolase family 19 protein	G9L6E8	Escherichia_phage	1.3e-112	95.7
WP_115760332.1\|1290137_1290620_+	DUF2514 domain-containing protein	A0A0F6TK39	Escherichia_coli_O157_typing_phage	2.0e-73	91.9
WP_022645975.1\|1290838_1291378_-	DUF5384 family protein	G9L6F0	Escherichia_phage	2.9e-44	96.6
WP_000669402.1\|1291393_1291909_-	glycine zipper 2TM domain-containing protein	G9L6F1	Escherichia_phage	1.0e-62	100.0
WP_001344399.1\|1292222_1292396_-	DUF2633 family protein	G9L6F2	Escherichia_phage	6.8e-24	100.0

DBSCAN-SWA_3

1697098 : 1706540

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022645872.1\|1697098_1698025_+	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	2.2e-23	30.8
WP_022645871.1\|1698029_1698761_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|1698741_1698849_-	protein YohO	NA	NA	NA	NA
WP_001240398.1\|1698908_1699640_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	2.8e-111	99.0
WP_001334139.1\|1699861_1701547_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	9.5e-304	99.5
WP_012311742.1\|1701543_1702263_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295430.1\|1702309_1702780_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_001296231.1\|1702820_1703282_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
WP_022645869.1\|1703406_1705407_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.8
WP_001329822.1\|1705403_1706540_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	4.2e-162	97.4

DBSCAN-SWA_4

1798650 : 1807364

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001116131.1\|1798650_1800045_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	2.8e-19	31.9
WP_000183060.1\|1800219_1801113_+	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	1.0e-46	42.0
WP_000699418.1\|1801485_1802571_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.4e-101	54.2
WP_001023627.1\|1802570_1803470_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.5e-29	35.6
WP_000857549.1\|1803527_1804406_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.5e-106	64.1
WP_001100791.1\|1804410_1804959_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.2e-51	56.1
WP_000735124.1\|1806236_1807364_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAI1	Catovirus	5.3e-32	30.4

DBSCAN-SWA_5

2340249 : 2449924

114

Enterobacteria_phage(38.6%)

transposase,lysis,terminase,integrase,protease,tail,portal

attL 2347825:2347841|attR 2378565:2378581

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001260849.1\|2340249_2341071_-\|protease	serine protease	NA	NA	NA	NA
WP_000233090.1\|2341170_2341254_-	hypothetical protein	NA	NA	NA	NA
WP_000743943.1\|2341346_2341682_-	acid shock protein	NA	NA	NA	NA
WP_000091840.1\|2342078_2343332_-	MFS transporter	NA	NA	NA	NA
WP_001019530.1\|2343438_2344332_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000225257.1\|2344466_2345687_+	DNA-binding transcriptional repressor Mlc	NA	NA	NA	NA
WP_000919226.1\|2345811_2346507_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_071586384.1\|2346459_2347752_-	voltage-gated ClC-type chloride channel ClcB	NA	NA	NA	NA
2347825:2347841	attL	NA	NA	NA	NA
WP_021516105.1\|2347910_2348525_-	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	6.6e-29	36.3
WP_000526500.1\|2348567_2349422_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_000213028.1\|2349423_2350041_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	9.5e-76	59.6
WP_072146081.1\|2350051_2352475_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	2.2e-208	48.8
WP_022645727.1\|2352535_2354962_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	1.7e-213	49.2
WP_001295396.1\|2355160_2355466_-	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_001445899.1\|2355573_2356284_+	YnfC family lipoprotein	NA	NA	NA	NA
WP_001138584.1\|2356286_2356847_-	spermidine N1-acetyltransferase	NA	NA	NA	NA
WP_000705197.1\|2356881_2357223_-	DUF1283 family protein	NA	NA	NA	NA
WP_001304355.1\|2357357_2357684_+	YnfA family protein	A0A218MNG8	uncultured_virus	2.9e-23	54.5
WP_001295394.1\|2357889_2359104_+	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
WP_000836037.1\|2359115_2360135_+	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	4.3e-17	26.2
WP_001389342.1\|2360192_2360321_+	hypothetical protein	NA	NA	NA	NA
WP_000876976.1\|2360322_2361603_-\|integrase	site-specific integrase	B6DZ48	Enterobacteria_phage	1.0e-156	62.6
WP_001296941.1\|2361637_2361874_-	excisionase family protein	S4TND0	Salmonella_phage	6.1e-15	50.7
WP_024946566.1\|2361961_2364433_-	exonuclease	A0A192Y6E0	Salmonella_phage	8.5e-59	57.5
WP_001090200.1\|2364525_2364717_-	DUF1482 family protein	NA	NA	NA	NA
WP_001317853.1\|2364713_2364902_-	hypothetical protein	NA	NA	NA	NA
WP_000159335.1\|2365404_2365605_+	hypothetical protein	NA	NA	NA	NA
WP_001320327.1\|2365573_2365939_-	hypothetical protein	NA	NA	NA	NA
WP_000379591.1\|2365950_2366103_-	DUF1391 family protein	M4QQ57	Salicola_phage	6.6e-07	53.2
WP_000476993.1\|2366779_2367007_+	transcriptional regulator	NA	NA	NA	NA
WP_000705349.1\|2366990_2367512_+	hypothetical protein	NA	NA	NA	NA
WP_000054505.1\|2367492_2368458_+	hypothetical protein	U5P0A0	Shigella_phage	2.9e-55	61.2
WP_001151189.1\|2368498_2368900_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.4e-64	95.5
WP_022645725.1\|2369099_2370122_+	hypothetical protein	Q858S2	Enterobacteria_phage	2.5e-105	62.4
WP_001328008.1\|2370774_2370978_+	hypothetical protein	NA	NA	NA	NA
WP_001546200.1\|2370984_2371092_-	hypothetical protein	Q7Y2Q9	Escherichia_phage	2.5e-08	96.6
WP_000887491.1\|2371136_2371349_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.7e-29	97.1
WP_000980999.1\|2371565_2371817_+	hypothetical protein	NA	NA	NA	NA
WP_032140164.1\|2371883_2372162_+	hypothetical protein	A0A077KB22	Edwardsiella_phage	6.1e-06	37.1
WP_001376415.1\|2372163_2373213_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	6.5e-109	54.6
WP_000904111.1\|2373225_2373582_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	6.1e-35	62.7
WP_000762886.1\|2373596_2374418_+	antitermination protein	K7P7B9	Enterobacteria_phage	2.1e-78	59.0
WP_001348754.1\|2374951_2375278_+	hypothetical protein	NA	NA	NA	NA
WP_000562553.1\|2375313_2375445_+	DUF3927 family protein	H6WZJ7	Escherichia_phage	3.7e-06	100.0
WP_022645723.1\|2375811_2376240_+	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_001348108.1\|2376411_2376786_+	hypothetical protein	NA	NA	NA	NA
WP_000839562.1\|2377037_2377253_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.3e-32	94.4
WP_000196128.1\|2377257_2377569_+	DUF1327 domain-containing protein	K7PGU6	Enterobacteria_phage	1.5e-24	62.6
WP_001092966.1\|2377565_2378099_+	lysozyme	K7PLY1	Enterobacteria_phage	8.4e-97	93.2
WP_001071776.1\|2378095_2378593_+	DUF2514 domain-containing protein	NA	NA	NA	NA
2378565:2378581	attR	NA	NA	NA	NA
WP_000066495.1\|2378957_2379170_+	cold shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
WP_071526745.1\|2379180_2379369_+	cold-shock protein	NA	NA	NA	NA
WP_001443523.1\|2379516_2379672_+	hypothetical protein	NA	NA	NA	NA
WP_001019207.1\|2379844_2380018_+	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_000548593.1\|2380313_2380520_+	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	3.4e-22	79.4
WP_085947917.1\|2380602_2381876_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.4e-177	99.3
WP_022645722.1\|2382408_2382903_+	DUF1441 family protein	A0A291AWV8	Escherichia_phage	3.8e-83	99.4
WP_000934104.1\|2382902_2385005_+\|terminase	phage terminase large subunit family protein	A0A291AWY5	Escherichia_phage	0.0e+00	96.7
WP_001072975.1\|2385001_2385214_+	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
WP_000985958.1\|2385213_2386722_+\|portal	phage portal protein	A5LH29	Enterobacteria_phage	6.6e-288	99.4
WP_001136588.1\|2386666_2388694_+\|protease	Clp protease ClpP	K7PGT6	Enterobacteria_phage	0.0e+00	99.7
WP_001097050.1\|2388779_2389103_+	DUF2190 family protein	A0A291AWX2	Escherichia_phage	8.5e-52	100.0
WP_022645721.1\|2389095_2389371_+	phage protein	K7PH43	Enterobacteria_phage	3.8e-45	98.9
WP_000677120.1\|2389382_2389973_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	7.2e-81	80.1
WP_001079410.1\|2389969_2390371_+\|tail	tail protein	A0A291AWY2	Escherichia_phage	2.4e-72	99.2
WP_022645720.1\|2390381_2391125_+\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	7.3e-131	98.4
WP_001370402.1\|2391184_2391571_+\|tail	phage minor tail protein G	A0A291AWW5	Escherichia_phage	4.9e-62	96.1
WP_063815218.1\|2391579_2391897_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	4.4e-53	100.0
WP_022645718.1\|2391880_2394946_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	98.2
WP_000447253.1\|2394945_2395275_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.7e-60	100.0
WP_001152382.1\|2395284_2395983_+\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	1.3e-134	99.6
WP_024946565.1\|2395988_2396732_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	9.2e-150	98.4
WP_023277304.1\|2396629_2397277_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	4.7e-110	94.9
WP_001228249.1\|2400883_2401483_+	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	1.5e-102	92.0
WP_001546831.1\|2401547_2403920_+\|tail	phage tail fiber protein	A0A0E3M0V5	Enterobacteria_phage	4.1e-103	47.5
WP_001546830.1\|2403916_2404195_+	hypothetical protein	A0A0E3GMJ7	Enterobacteria_phage	3.8e-24	54.3
WP_001546829.1\|2404205_2405246_+\|tail	tail fiber domain-containing protein	A0A0E3M4A9	Enterobacteria_phage	4.5e-155	80.5
WP_001546828.1\|2405288_2405582_+	hypothetical protein	NA	NA	NA	NA
WP_000086527.1\|2405809_2406400_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8
WP_000836768.1\|2406716_2406950_-	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
WP_120795384.1\|2407018_2407132_-	Rac prophage; protein YnaM	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
WP_000347484.1\|2407736_2409020_+	MHS family MFS transporter	NA	NA	NA	NA
WP_000527788.1\|2409109_2410570_+	mannitol dehydrogenase family protein	G8DCZ3	Micromonas_pusilla_virus	6.6e-43	30.1
WP_000214712.1\|2410605_2410809_-	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	1.6e-11	55.2
WP_022645715.1\|2410985_2411672_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000636571.1\|2411760_2412507_-	bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG	NA	NA	NA	NA
WP_022645714.1\|2412643_2414689_+	peptidyl-dipeptidase Dcp	NA	NA	NA	NA
WP_022645713.1\|2415054_2415447_+	YdeI family stress tolerance OB fold protein	NA	NA	NA	NA
WP_000592819.1\|2415701_2416592_+	diguanylate cyclase DgcZ	A0A127AWB9	Bacillus_phage	1.4e-19	37.0
WP_000901367.1\|2416810_2416906_-	protein MgtS	NA	NA	NA	NA
WP_022645712.1\|2417032_2418220_-	efflux MFS transporter YdeE	NA	NA	NA	NA
WP_000087204.1\|2418414_2419314_+	O-acetylserine/cysteine exporter	NA	NA	NA	NA
WP_000803527.1\|2419344_2419563_-	multiple antibiotic resistance protein MarB	NA	NA	NA	NA
WP_000091199.1\|2419594_2419978_-	MDR efflux pump AcrAB transcriptional activator MarA	D0R0F8	Streptococcus_phage	4.7e-09	32.3
WP_022645711.1\|2419998_2420433_-	multiple antibiotic resistance transcriptional regulator MarR	NA	NA	NA	NA
WP_000885033.1\|2420644_2421310_+	NAAT family transporter MarC	NA	NA	NA	NA
WP_000210799.1\|2421334_2422525_-	L-arabinose MFS transporter	NA	NA	NA	NA
WP_140028015.1\|2422674_2423490_-	putative protein YneK	NA	NA	NA	NA
WP_000366505.1\|2424644_2425526_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000156623.1\|2425626_2427015_+	succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_000257409.1\|2427078_2428005_+	glutaminase B	NA	NA	NA	NA
WP_022645709.1\|2428004_2428364_+	DUF4186 domain-containing protein	NA	NA	NA	NA
WP_022645708.1\|2428502_2429921_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	1.4e-18	36.1
WP_022645707.1\|2430148_2431600_+	tagaturonate reductase	NA	NA	NA	NA
WP_022645706.1\|2431796_2432711_+	hypothetical protein	NA	NA	NA	NA
WP_022645705.1\|2432714_2433473_-	trans-aconitate 2-methyltransferase	NA	NA	NA	NA
WP_000558525.1\|2433529_2433820_-	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase	NA	NA	NA	NA
WP_022645704.1\|2433843_2434719_-	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA	NA	NA	NA
WP_000172485.1\|2434745_2435768_-	autoinducer 2 ABC transporter substrate-binding protein LsrB	NA	NA	NA	NA
WP_001222725.1\|2435779_2436772_-	autoinducer 2 ABC transporter permease LsrD	NA	NA	NA	NA
WP_022645703.1\|2436771_2437800_-	autoinducer 2 ABC transporter permease LsrC	NA	NA	NA	NA
WP_000154352.1\|2439576_2440530_+	transcriptional regulator LsrR	NA	NA	NA	NA
WP_022645702.1\|2440608_2442201_+	autoinducer-2 kinase	NA	NA	NA	NA
WP_085947917.1\|2448651_2449924_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.4e-177	99.3

DBSCAN-SWA_6

2667276 : 2733909

Enterobacteria_phage(36.54%)

transposase,capsid,lysis,terminase,holin,protease,tail,integrase,head,portal

attL 2684621:2684648|attR 2734046:2734073

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000422059.1\|2667276_2668326_-\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5
WP_000559277.1\|2668545_2669304_+	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	4.4e-06	23.4
WP_001278893.1\|2669300_2669891_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_001000715.1\|2669947_2670256_-	hypothetical protein	NA	NA	NA	NA
WP_077266175.1\|2670265_2671252_-	hypothetical protein	NA	NA	NA	NA
WP_001291217.1\|2671457_2672333_-	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_022645614.1\|2672543_2674433_-	DUF2207 domain-containing protein	NA	NA	NA	NA
WP_001295575.1\|2674460_2675081_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_001285663.1\|2675077_2675959_-	5'-3' exoribonuclease	NA	NA	NA	NA
WP_001700591.1\|2676096_2676141_+	trp operon leader peptide	NA	NA	NA	NA
WP_022645613.1\|2676232_2677795_+	anthranilate synthase component I	NA	NA	NA	NA
WP_000763524.1\|2677794_2679390_+	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	1.7e-52	38.5
WP_001195273.1\|2679393_2680752_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	3.9e-37	41.2
WP_022645612.1\|2680763_2681957_+	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_022645611.1\|2681956_2682763_+	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_000807651.1\|2683153_2683333_+	general stress protein	NA	NA	NA	NA
WP_001056491.1\|2683418_2683919_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_071586393.1\|2683964_2684042_+	DUF892 family protein	NA	NA	NA	NA
2684621:2684648	attL	NA	NA	NA	NA
WP_000937483.1\|2685243_2685513_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	9.3e-20	79.4
WP_000240999.1\|2685569_2686238_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_071988034.1\|2686182_2686320_-\|capsid	nucleocapsid protein	NA	NA	NA	NA
WP_000885578.1\|2686292_2686877_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	5.0e-103	94.8
WP_000216487.1\|2686876_2689903_-	membrane protein	A0A0K2FIZ6	Escherichia_phage	7.0e-55	54.5
WP_001228314.1\|2690054_2690654_-	Ail/Lom family protein	Q9EV15	Enterobacteria_phage	9.1e-108	97.0
WP_023909008.1\|2690721_2694195_-	host specificity protein J	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	89.8
WP_000559722.1\|2694175_2694517_-	hypothetical protein	NA	NA	NA	NA
WP_122997661.1\|2694538_2695171_-\|tail	tail assembly protein	Q6H9T3	Enterobacteria_phage	1.5e-100	94.3
WP_000194723.1\|2695116_2695860_-\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	5.0e-148	98.0
WP_001335877.1\|2695870_2696569_-\|tail	phage minor tail protein L	B6DZB1	Enterobacteria_phage	1.7e-129	96.6
WP_000847298.1\|2696568_2696898_-\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_023909007.1\|2696894_2699468_-\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	83.3
WP_000533402.1\|2699448_2699862_-\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	1.6e-42	82.2
WP_000479095.1\|2699888_2700320_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	6.2e-42	68.8
WP_000235110.1\|2700333_2701086_-\|tail	phage tail protein	Q687F6	Enterobacteria_phage	1.2e-133	98.4
WP_000683079.1\|2701093_2701489_-\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	1.5e-58	82.4
WP_001575631.1\|2701485_2702061_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.1e-49	57.8
WP_001204553.1\|2702075_2702429_-\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	2.5e-41	69.2
WP_000201501.1\|2702421_2702805_-	DNA-packaging protein FI	NA	NA	NA	NA
WP_000522601.1\|2702856_2703885_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.1e-113	62.2
WP_000256835.1\|2703942_2704290_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	2.9e-21	55.9
WP_023909006.1\|2704326_2705832_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	3.6e-100	53.3
WP_000831818.1\|2705821_2707414_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	4.9e-185	61.3
WP_000259002.1\|2707410_2707617_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_000622379.1\|2707600_2709529_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	9.7e-260	66.7
WP_000867575.1\|2709500_2710049_-\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.0e-57	84.2
WP_023909270.1\|2710502_2711570_+	hypothetical protein	NA	NA	NA	NA
WP_000654790.1\|2711511_2712132_-	sce7726 family protein	A0A0U2RXY7	Escherichia_phage	5.1e-53	53.7
WP_024946561.1\|2712548_2713007_-\|lysis	lysis protein	K7PJW6	Enterobacteria_phage	7.5e-70	92.8
WP_023909004.1\|2713003_2713537_-	lysozyme	K7PLY1	Enterobacteria_phage	2.5e-101	98.3
WP_023909003.1\|2713592_2713907_-	DUF1327 domain-containing protein	K7PGU6	Enterobacteria_phage	3.1e-51	98.1
WP_000284510.1\|2713911_2714127_-\|holin	holin	G9L6J5	Escherichia_phage	9.0e-34	100.0
WP_023909002.1\|2714276_2716130_-	SASA family carbohydrate esterase	Q08JA2	Stx2-converting_phage	0.0e+00	89.2
WP_000871291.1\|2716390_2716726_+	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	5.2e-44	74.8
WP_001438304.1\|2717006_2717138_-	DUF3927 family protein	H6WZJ7	Escherichia_phage	1.1e-05	96.4
WP_023141057.1\|2717173_2717500_-	hypothetical protein	NA	NA	NA	NA
WP_000935536.1\|2717939_2718989_-	site-specific DNA-methyltransferase	A0A0N7KZF8	Stx2-converting_phage	8.8e-199	95.7
WP_000917767.1\|2719139_2719337_-	hypothetical protein	Q9MC00	Enterobacteria_phage	2.1e-29	100.0
WP_023909112.1\|2719550_2720240_-	antiterminator	I6PDF8	Cronobacter_phage	1.8e-54	46.4
WP_000904174.1\|2720236_2720596_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	3.9e-37	64.9
WP_023909113.1\|2720608_2721658_-	DUF968 domain-containing protein	U5P0K4	Shigella_phage	2.7e-107	54.0
WP_032151993.1\|2721659_2721938_-	hypothetical protein	I6PCV7	Cronobacter_phage	7.4e-12	48.4
WP_000967408.1\|2722104_2722317_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.1e-26	94.3
WP_000786213.1\|2722519_2722699_-	hypothetical protein	NA	NA	NA	NA
WP_085948316.1\|2722969_2724242_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	2.8e-170	95.7
WP_001327238.1\|2724264_2724522_-	hypothetical protein	NA	NA	NA	NA
WP_001224662.1\|2724687_2724870_-	hypothetical protein	A0A2R2Z308	Escherichia_phage	1.4e-27	100.0
WP_000403785.1\|2724963_2725320_-	hypothetical protein	A0A2R2Z307	Escherichia_phage	1.8e-58	99.2
WP_001468623.1\|2725377_2725800_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	3.3e-64	91.4
WP_000095673.1\|2725840_2726803_-	DNA-binding protein	U5P0A0	Shigella_phage	1.6e-69	51.2
WP_000693906.1\|2726825_2727251_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_000711018.1\|2727234_2727558_-	transcriptional regulator	A0A0R6PH31	Moraxella_phage	6.2e-10	44.9
WP_000948454.1\|2727682_2728159_+	hypothetical protein	A0A2D1GNH0	Pseudomonas_phage	5.7e-12	53.4
WP_001725971.1\|2728477_2728630_+	DUF1391 family protein	M4QQ57	Salicola_phage	1.1e-06	51.1
WP_016237926.1\|2728641_2729016_+	hypothetical protein	NA	NA	NA	NA
WP_122991287.1\|2729001_2729148_-	hypothetical protein	NA	NA	NA	NA
WP_000449192.1\|2729548_2729737_+	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001090200.1\|2729733_2729925_+	DUF1482 family protein	NA	NA	NA	NA
WP_023909115.1\|2730017_2732489_+	exonuclease	A0A192Y6E0	Salmonella_phage	2.3e-56	57.1
WP_140028047.1\|2732772_2733909_+\|integrase	tyrosine-type recombinase/integrase	O21940	Phage_21	2.0e-103	51.7
2734046:2734073	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3125107 : 3214514

Salmonella_phage(62.5%)

capsid,lysis,terminase,tRNA,protease,tail,plate,integrase,head,portal

attL 3180211:3180237|attR 3214589:3214615

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000886683.1\|3125107_3126400_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
WP_000067771.1\|3126490_3127834_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	7.3e-81	41.0
WP_001295343.1\|3127844_3128456_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_022645455.1\|3128614_3132685_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.7
WP_000228473.1\|3132819_3133314_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_000537432.1\|3133857_3134823_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.1e-62	44.6
WP_001043590.1\|3134945_3136712_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	4.1e-23	24.3
WP_001202192.1\|3136712_3138434_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	4.0e-15	31.2
WP_022645453.1\|3138475_3139180_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3139464_3139683_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_000934041.1\|3140430_3142707_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.9e-166	42.5
WP_000520781.1\|3142737_3143058_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4
WP_000410785.1\|3143380_3143605_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	2.3e-16	61.2
WP_022645444.1\|3143677_3145624_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	6.5e-38	40.1
WP_000746460.1\|3145620_3146736_-	macrolide transporter subunit MacA	NA	NA	NA	NA
WP_001400542.1\|3146886_3147843_+	DUF535 domain-containing protein	NA	NA	NA	NA
WP_000599806.1\|3147839_3149498_-	ATP-dependent endonuclease	NA	NA	NA	NA
WP_000488716.1\|3149923_3150619_+	aquaporin Z	NA	NA	NA	NA
WP_022645441.1\|3151076_3151976_+	L-lysine exporter LysO	NA	NA	NA	NA
WP_022645440.1\|3152118_3153771_+	hydroxylamine reductase	NA	NA	NA	NA
WP_000178691.1\|3153782_3154751_+	NADH oxidoreductase	NA	NA	NA	NA
WP_000815366.1\|3154883_3156602_+	ubiquinone-dependent pyruvate dehydrogenase	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	6.8e-31	24.0
WP_000566375.1\|3156638_3157640_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_022645439.1\|3157650_3159081_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_001305933.1\|3159179_3160193_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_001255167.1\|3160189_3161020_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	5.7e-07	30.0
WP_001160731.1\|3161016_3161340_-	heavy metal-binding domain-containing protein	NA	NA	NA	NA
WP_001328210.1\|3161394_3161583_+	hypothetical protein	NA	NA	NA	NA
WP_022645438.1\|3161550_3163320_-	hypothetical protein	NA	NA	NA	NA
WP_001270657.1\|3163967_3164483_+	lipoprotein	NA	NA	NA	NA
WP_000027205.1\|3164700_3165429_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	6.0e-29	36.7
WP_000756575.1\|3165446_3166178_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001001702.1\|3166184_3166901_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_000464489.1\|3166900_3167569_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_001295905.1\|3167794_3168526_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001149713.1\|3168554_3169682_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A1X9I6F4	Streptococcus_phage	3.5e-28	27.6
WP_000389260.1\|3169722_3170211_-	YbjO family protein	NA	NA	NA	NA
WP_001061658.1\|3170270_3171116_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_000105436.1\|3171112_3172066_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_000996007.1\|3172075_3173209_-	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	1.4e-29	34.0
WP_000126075.1\|3173303_3174416_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_000203025.1\|3174766_3175243_-	YbjN domain-containing protein	NA	NA	NA	NA
WP_000684321.1\|3175330_3176233_-	30S ribosomal protein S6--L-glutamate ligase	I3ULC9	Synechococcus_phage	2.6e-37	34.4
WP_022645437.1\|3176293_3177016_-	nitroreductase NfsA	NA	NA	NA	NA
WP_022645436.1\|3176999_3177287_-	DUF1418 family protein	NA	NA	NA	NA
WP_001195231.1\|3177446_3177704_+	glutaredoxin 1	A0A2I7SAE2	Vibrio_phage	7.8e-24	63.1
WP_000681108.1\|3177733_3178111_-	hypothetical protein	NA	NA	NA	NA
WP_001024876.1\|3178380_3180066_+	aspartate:alanine antiporter	NA	NA	NA	NA
3180211:3180237	attL	NA	NA	NA	NA
WP_000972391.1\|3180301_3180520_-	transcriptional activator Ogr/delta	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_022645435.1\|3180610_3181711_-	phage late control D family protein	E5G6Q3	Salmonella_phage	1.0e-176	85.2
WP_022645434.1\|3181707_3182193_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.6e-65	79.4
WP_022645433.1\|3182189_3185267_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	69.3
WP_000763311.1\|3185259_3185379_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_022645432.1\|3185393_3185696_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	3.5e-39	88.0
WP_001207660.1\|3185750_3186266_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	2.1e-89	95.3
WP_000046146.1\|3186275_3187448_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	7.8e-204	90.0
WP_022645431.1\|3187581_3188184_-\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	3.7e-93	84.4
WP_022645429.1\|3189720_3190326_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.2e-110	92.5
WP_022645428.1\|3190318_3191227_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	3.5e-143	90.7
WP_000177597.1\|3191213_3191573_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	2.8e-51	85.7
WP_000993764.1\|3191569_3192148_-\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	7.2e-94	86.5
WP_022645427.1\|3192251_3193058_+	hypothetical protein	NA	NA	NA	NA
WP_021522006.1\|3192999_3193446_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	4.0e-60	84.2
WP_001595569.1\|3193438_3193870_-\|tail	phage tail protein	E5G6N3	Salmonella_phage	9.9e-72	93.7
WP_072224386.1\|3193835_3194036_-	hypothetical protein	A0A1S6KZX6	Salmonella_phage	3.9e-23	77.3
WP_022645426.1\|3193965_3194394_-\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	1.9e-46	75.2
WP_022645425.1\|3194390_3194768_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	8.8e-16	40.0
WP_086555589.1\|3194769_3195243_-	lysozyme	E5G6N1	Salmonella_phage	8.3e-80	90.4
WP_000171568.1\|3195262_3195478_-	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
WP_000868175.1\|3195481_3195685_-\|tail	tail protein X	E5G6M9	Salmonella_phage	1.4e-31	92.5
WP_000673523.1\|3195684_3196149_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	6.4e-77	89.6
WP_021534472.1\|3196244_3196895_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	9.6e-111	95.8
WP_000742503.1\|3196898_3197957_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	8.4e-181	93.1
WP_022645423.1\|3197973_3198807_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	2.8e-123	91.0
WP_022645422.1\|3198949_3200716_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.5
WP_022645421.1\|3200715_3201750_+\|portal	phage portal protein	E5G6M3	Salmonella_phage	2.3e-167	85.5
WP_022645420.1\|3201786_3203568_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_022645419.1\|3204101_3205160_+	hypothetical protein	NA	NA	NA	NA
WP_001311555.1\|3205334_3205640_-	DinI family protein	E5G6M1	Salmonella_phage	2.3e-35	98.7
WP_001154434.1\|3205578_3205767_-	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_022645418.1\|3205920_3208335_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.6
WP_000104157.1\|3208331_3209189_-	DNA adenine methylase	E5G6L8	Salmonella_phage	4.1e-162	98.2
WP_001399246.1\|3209185_3209413_-	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	7.8e-36	98.7
WP_001244228.1\|3209412_3209646_-	DUF2732 family protein	E5G6L6	Salmonella_phage	6.4e-33	98.7
WP_001311552.1\|3209713_3210055_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	1.7e-55	98.2
WP_000956182.1\|3210018_3210219_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	7.1e-33	98.5
WP_022645417.1\|3210226_3210736_-	phage regulatory CII family protein	E5G6L3	Salmonella_phage	1.3e-86	98.2
WP_000188448.1\|3210768_3210990_-	hypothetical protein	NA	NA	NA	NA
WP_022645416.1\|3211085_3211682_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.4e-39	42.9
WP_022645415.1\|3211702_3213379_+	DUF4041 domain-containing protein	A0A142LP25	Marinitoga_camini_virus	9.8e-83	66.8
WP_001595551.1\|3213461_3214514_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	4.8e-104	55.8
3214589:3214615	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3531683 : 3586993

Enterobacteria_phage(63.46%)

transposase,capsid,lysis,terminase,protease,tail,integrase,head,portal

attL 3540092:3540138|attR 3587007:3587053

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022645324.1\|3531683_3532820_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_022645323.1\|3533017_3535255_+	phage adsorption protein NrfB	NA	NA	NA	NA
WP_022645322.1\|3535241_3538214_+	bacteriophage adsorption protein NfrA	NA	NA	NA	NA
WP_022645321.1\|3538214_3539105_+	DUF4434 family protein	NA	NA	NA	NA
WP_001177457.1\|3539287_3540049_+	DNA-binding transcriptional regulator EnvY	NA	NA	NA	NA
3540092:3540138	attL	NA	NA	NA	NA
WP_001201842.1\|3540561_3541515_+\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
WP_000386784.1\|3541763_3542513_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_022645319.1\|3543524_3544565_-\|tail	tail fiber domain-containing protein	A0A0E3M4A9	Enterobacteria_phage	2.1e-176	91.9
WP_001204892.1\|3544577_3544847_-	hypothetical protein	NA	NA	NA	NA
WP_023909117.1\|3544846_3547204_-\|tail	tail protein	A0A1X7QGG5	Escherichia_phage	2.2e-117	50.1
WP_038431964.1\|3547268_3547868_-	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	4.4e-102	92.5
WP_023909233.1\|3547935_3551415_-	host specificity protein J	A5LH43	Enterobacteria_phage	0.0e+00	89.6
WP_000090891.1\|3551475_3552108_-\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	2.2e-96	99.5
WP_022645314.1\|3552044_3552788_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.9e-149	97.6
WP_001152639.1\|3552793_3553492_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	2.3e-134	100.0
WP_000847321.1\|3553491_3553821_-\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	8.9e-57	97.2
WP_022645312.1\|3556370_3556805_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	1.5e-64	99.2
WP_001468358.1\|3556786_3557209_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.8e-71	97.9
WP_001547245.1\|3557224_3557965_-\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	1.7e-127	95.9
WP_000683105.1\|3557972_3558368_-\|tail	tail protein	A0A0K2FIF4	Enterobacteria_phage	1.0e-70	100.0
WP_000985119.1\|3558364_3558943_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	5.9e-80	99.5
WP_000752979.1\|3558954_3559308_-\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	2.0e-62	100.0
WP_000158919.1\|3559319_3559718_-	DNA-packaging protein FI	A0A0K2FIR1	Enterobacteria_phage	3.1e-64	100.0
WP_022645311.1\|3559759_3560785_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.0e-191	99.4
WP_001297109.1\|3560840_3561173_-\|head	head decoration protein	C6ZCY1	Enterobacteria_phage	2.2e-55	100.0
WP_022645310.1\|3561182_3562502_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	6.9e-233	98.2
WP_001553867.1\|3562482_3564084_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	8.5e-310	99.2
WP_001027268.1\|3564268_3566194_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.7
WP_000453580.1\|3566168_3566714_-	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	2.8e-95	100.0
WP_122999095.1\|3566829_3567087_+	hypothetical protein	A0A0K2FJC5	Escherichia_phage	8.9e-12	97.1
WP_000105084.1\|3567102_3567336_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	7.3e-21	94.4
WP_000079508.1\|3567392_3567803_+	DUF1398 family protein	C6ZCX4	Enterobacteria_phage	1.3e-52	76.3
WP_001139678.1\|3568154_3568307_-	hypothetical protein	K7PKL2	Enterobacteria_phage	3.1e-20	96.0
WP_001228702.1\|3568335_3568542_-	hypothetical protein	H6WRZ6	Salmonella_phage	5.3e-31	98.5
WP_001135261.1\|3568758_3569256_-	lysozyme	A0A1B5FP97	Escherichia_phage	4.2e-90	97.6
WP_000839582.1\|3569255_3569471_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.2e-33	98.6
WP_022645309.1\|3569658_3570390_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000780581.1\|3571892_3572417_+	lipocalin family protein	A0A1W6JNX6	Morganella_phage	1.1e-48	54.1
WP_022645308.1\|3572572_3572950_-	antitermination protein Q	Q777W5	Enterobacteria_phage	8.1e-54	83.3
WP_000971074.1\|3573035_3573176_-	YlcG family protein	K7PHH3	Enterobacteria_phage	6.5e-09	69.8
WP_001099712.1\|3573172_3573535_-	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	4.3e-60	96.5
WP_000774504.1\|3573531_3573822_-	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	2.8e-46	92.7
WP_000224912.1\|3573814_3573985_-	hypothetical protein	K7P7K0	Enterobacteria_phage	1.4e-13	69.8
WP_001053034.1\|3573984_3574440_-	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	4.9e-61	67.5
WP_072130332.1\|3574436_3574538_-	hypothetical protein	NA	NA	NA	NA
WP_000379700.1\|3574627_3574984_-	hypothetical protein	NA	NA	NA	NA
WP_001351655.1\|3575445_3575769_-	hypothetical protein	NA	NA	NA	NA
WP_000709074.1\|3575880_3577407_-	recombinase family protein	Q3HQV4	Burkholderia_phage	3.6e-31	27.7
WP_032139864.1\|3577464_3577572_-	hypothetical protein	NA	NA	NA	NA
WP_001070451.1\|3577663_3577996_-	SMR family multidrug efflux protein EmrE	NA	NA	NA	NA
WP_000145902.1\|3578063_3578366_-	hypothetical protein	A0A0N6WES4	Escherichia_phage	1.7e-41	93.5
WP_140028026.1\|3578362_3579064_-	Replication protein P	M1FJ72	Enterobacteria_phage	5.1e-126	97.0
WP_001361484.1\|3579060_3579990_-	replication protein	A0A0M5M7Y1	Salmonella_phage	4.0e-110	63.8
WP_001182772.1\|3580076_3580616_-	hypothetical protein	M9NZI6	Enterobacteria_phage	1.5e-61	66.1
WP_001067458.1\|3580685_3580916_-	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
WP_000858975.1\|3581020_3581710_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	2.8e-92	75.0
WP_000233579.1\|3582304_3582511_+	hypothetical protein	K7PM31	Enterobacteria_phage	7.1e-28	83.8
WP_020241285.1\|3582587_3582884_+	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	3.6e-49	99.0
WP_022645306.1\|3582889_3583675_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.9e-148	99.2
WP_000186848.1\|3583671_3584352_+	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	1.6e-132	100.0
WP_000149544.1\|3584348_3584531_+	DUF1317 domain-containing protein	A0A1U8QQC1	Enterobacteria_phage	6.9e-27	96.7
WP_000548537.1\|3584503_3584695_+	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	2.1e-26	98.4
WP_022645305.1\|3585086_3585305_+	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	5.4e-34	97.2
WP_000488407.1\|3585352_3585631_+	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.9e-48	97.8
WP_000446905.1\|3585602_3585974_+	helix-turn-helix domain-containing protein	M1FJ59	Enterobacteria_phage	2.1e-46	81.0
WP_001299447.1\|3585829_3586993_+\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	3.4e-199	86.3
3587007:3587053	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3816285 : 3866873

Salmonella_phage(10.0%)

transposase,integrase,plate

attL 3819770:3819785|attR 3873142:3873157

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016231257.1\|3816285_3816723_+	hypothetical protein	I6S5X4	Salmonella_phage	3.1e-12	33.1
WP_025693498.1\|3816784_3818890_-	hypothetical protein	A0A2I7QQN9	Vibrio_phage	2.7e-90	37.1
WP_025693499.1\|3818889_3820311_-	DNA transfer protein	B6SCW4	Bacteriophage	4.1e-122	52.7
3819770:3819785	attL	NA	NA	NA	NA
WP_000909175.1\|3820310_3820988_-	hypothetical protein	Q2A0B2	Sodalis_phage	9.2e-56	71.6
WP_000420674.1\|3820981_3821443_-	DUF2824 family protein	Q2A0B3	Sodalis_phage	2.9e-61	72.2
WP_071791469.1\|3821887_3822139_-	hypothetical protein	NA	NA	NA	NA
WP_001585368.1\|3822205_3824962_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	1.8e-299	57.3
WP_001208878.1\|3824948_3825320_-	hypothetical protein	NA	NA	NA	NA
WP_000628967.1\|3825312_3825654_-	hypothetical protein	A0A1B5FPL8	Escherichia_phage	2.5e-33	61.5
WP_001058748.1\|3825664_3826267_-	hypothetical protein	A0A286S1S7	Klebsiella_phage	2.6e-25	36.3
WP_000181940.1\|3826259_3826481_-	hypothetical protein	NA	NA	NA	NA
WP_001024675.1\|3826477_3826741_-	hypothetical protein	NA	NA	NA	NA
WP_001065738.1\|3826737_3826932_-	hypothetical protein	NA	NA	NA	NA
WP_025693500.1\|3826924_3827992_-	ash family protein	A0A1C9IHV9	Salmonella_phage	5.0e-16	38.4
WP_000476150.1\|3827985_3828168_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_140028029.1\|3828160_3828994_-	antA/AntB antirepressor family protein	A0A0P0ZCA2	Stx2-converting_phage	6.9e-21	45.7
WP_000412531.1\|3829006_3829438_-	hypothetical protein	A0A1W6JPH9	Morganella_phage	2.3e-28	49.7
WP_000035054.1\|3829437_3829641_-	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	4.7e-08	50.9
WP_001304884.1\|3829688_3829904_+	hypothetical protein	NA	NA	NA	NA
WP_000772643.1\|3830068_3831283_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	9.7e-133	56.5
WP_022645230.1\|3831638_3832892_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	3.4e-96	47.5
WP_022645229.1\|3832903_3834007_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	2.4e-61	40.1
WP_022645228.1\|3834294_3835350_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	2.9e-117	60.6
WP_000174682.1\|3835388_3835790_-	sigma factor-binding protein Crl	NA	NA	NA	NA
WP_000189541.1\|3835847_3837092_-	esterase FrsA	NA	NA	NA	NA
WP_001291990.1\|3837183_3837642_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA
WP_022645227.1\|3837902_3839360_+	cytosol nonspecific dipeptidase	NA	NA	NA	NA
WP_001029361.1\|3839407_3839650_+	hypothetical protein	NA	NA	NA	NA
WP_001361775.1\|3839666_3840176_-	hydrolase	NA	NA	NA	NA
WP_022645225.1\|3840237_3840852_-	peptide chain release factor H	NA	NA	NA	NA
WP_023909049.1\|3840848_3842000_-	RNA ligase RtcB family protein	A0A222ZMP7	Mycobacterium_phage	3.5e-31	30.9
WP_023909048.1\|3842178_3842631_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001263491.1\|3842640_3843039_-	type II toxin-antitoxin system mRNA interferase toxin YafO	NA	NA	NA	NA
WP_000554755.1\|3843041_3843335_-	type I toxin-antitoxin system antitoxin YafN	NA	NA	NA	NA
WP_022645222.1\|3843386_3844442_-	DNA polymerase IV	NA	NA	NA	NA
WP_031311948.1\|3844512_3845283_-	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA
WP_022645219.1\|3847078_3847852_-	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	9.3e-20	38.5
WP_000729708.1\|3848037_3848298_+	type II toxin-antitoxin system antitoxin DinJ	NA	NA	NA	NA
WP_071787834.1\|3848389_3848578_+	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA	NA	NA	NA
WP_001225679.1\|3848733_3849474_+	murein L,D-transpeptidase	NA	NA	NA	NA
WP_000333380.1\|3849444_3850212_-	class II glutamine amidotransferase	NA	NA	NA	NA
WP_001570958.1\|3850327_3850906_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	2.5e-14	32.0
WP_000973081.1\|3851145_3853590_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_000532698.1\|3853632_3854106_-	C-lysozyme inhibitor	NA	NA	NA	NA
WP_022645218.1\|3854259_3855030_+	2-oxoglutaramate amidase	NA	NA	NA	NA
WP_085949836.1\|3855493_3856706_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	4.7e-103	58.4
WP_001142958.1\|3856893_3857412_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_000037391.1\|3858108_3858609_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_022645217.1\|3858643_3858868_+	hypothetical protein	NA	NA	NA	NA
WP_022645215.1\|3860399_3860813_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_022645214.1\|3860816_3862667_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_022645213.1\|3862630_3863713_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_001113710.1\|3863737_3865018_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_001080149.1\|3865014_3865539_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_022645212.1\|3865541_3866873_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
3873142:3873157	attR	NA	NA	NA	NA

DBSCAN-SWA_10

4357882 : 4419185

Klosneuvirus(11.11%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001162184.1\|4357882_4359235_-\|protease	metalloprotease PmbA	NA	NA	NA	NA
WP_000166270.1\|4359328_4359880_+	ribosome-associated protein	NA	NA	NA	NA
WP_001219806.1\|4360035_4361409_-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA
WP_000853753.1\|4361584_4362583_+	class 1 fructose-bisphosphatase	A0A1V0SKX4	Klosneuvirus	5.7e-70	42.7
WP_000596015.1\|4362614_4363610_-	sugar ABC transporter permease YjfF	NA	NA	NA	NA
WP_001297255.1\|4363596_4364619_-	ABC transporter permease	NA	NA	NA	NA
WP_000210557.1\|4364632_4366135_-	sugar ABC transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	1.8e-11	30.3
WP_000265933.1\|4366274_4367231_-	galactofuranose ABC transporter substrate-binding protein YtfQ	NA	NA	NA	NA
WP_000055072.1\|4367540_4368071_+	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	9.4e-56	63.9
WP_001219160.1\|4368450_4368792_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_140028032.1\|4368794_4372574_-	autotransporter assembly complex protein TamB	NA	NA	NA	NA
WP_001556747.1\|4372570_4374304_-	autotransporter assembly complex protein TamA	NA	NA	NA	NA
WP_001295196.1\|4374509_4375148_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_000935042.1\|4375470_4376814_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_000689228.1\|4376874_4377081_-	DUF1107 domain-containing protein	NA	NA	NA	NA
WP_000937648.1\|4378048_4378960_-	hypothetical protein	NA	NA	NA	NA
WP_000886909.1\|4379171_4379912_-	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_000589446.1\|4380101_4382045_+	2',3'-cyclic-nucleotide 2'-phosphodiesterase	NA	NA	NA	NA
WP_000084622.1\|4382173_4382554_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000560581.1\|4382641_4383502_+	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA
WP_001305661.1\|4383610_4384576_+	DMT family transporter	NA	NA	NA	NA
WP_000331457.1\|4384683_4385346_+	iron-sulfur cluster repair protein YtfE	NA	NA	NA	NA
WP_000936773.1\|4385390_4386875_-	hypothetical protein	NA	NA	NA	NA
WP_000240846.1\|4386908_4388072_-	hypothetical protein	NA	NA	NA	NA
WP_000228342.1\|4388205_4389609_-	D-serine/D-alanine/glycine transporter	NA	NA	NA	NA
WP_000211225.1\|4389917_4390538_-	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_001119478.1\|4390755_4391394_+	cell division protein YtfB	NA	NA	NA	NA
WP_001309930.1\|4391540_4392737_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A077SL42	Escherichia_phage	1.3e-206	93.7
WP_001526538.1\|4392744_4393359_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	8.9e-42	58.4
WP_001305664.1\|4393800_4394595_+	DUF2686 family protein	NA	NA	NA	NA
WP_001196062.1\|4394665_4395115_-	50S ribosomal protein L9	NA	NA	NA	NA
WP_000135199.1\|4395156_4395384_-	30S ribosomal protein S18	NA	NA	NA	NA
WP_001296681.1\|4395388_4395703_-	primosomal replication protein N	NA	NA	NA	NA
WP_001216677.1\|4395709_4396105_-	30S ribosomal protein S6	NA	NA	NA	NA
WP_000492918.1\|4396431_4396707_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_001170835.1\|4396836_4397523_-	L-ribulose-5-phosphate 4-epimerase	NA	NA	NA	NA
WP_000949501.1\|4397522_4398377_-	L-ribulose-5-phosphate 3-epimerase	NA	NA	NA	NA
WP_000056760.1\|4398386_4399037_-	3-keto-L-gulonate-6-phosphate decarboxylase UlaD	NA	NA	NA	NA
WP_000776521.1\|4399050_4399515_-	PTS ascorbate transporter subunit IIA	NA	NA	NA	NA
WP_000218362.1\|4399524_4399830_-	PTS ascorbate transporter subunit IIB	NA	NA	NA	NA
WP_001305665.1\|4399845_4401243_-	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA
WP_001366537.1\|4401597_4402662_+	L-ascorbate 6-phosphate lactonase	NA	NA	NA	NA
WP_000133631.1\|4402769_4403525_+	HTH-type transcriptional regulator UlaR	NA	NA	NA	NA
WP_000569683.1\|4403521_4404271_-	esterase	NA	NA	NA	NA
WP_000254636.1\|4404452_4404782_+	biofilm peroxide resistance protein BsmA	NA	NA	NA	NA
WP_000811566.1\|4404930_4405206_+\|protease	protease activator YjfN	NA	NA	NA	NA
WP_012311664.1\|4405322_4406948_-	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA
WP_000944003.1\|4407031_4408195_-	glutathionylspermidine synthase family protein	B2ZXR7	Ralstonia_phage	1.8e-80	43.8
WP_022646468.1\|4408197_4408836_-	DUF1190 domain-containing protein	NA	NA	NA	NA
WP_000547760.1\|4408845_4409244_-	DUF350 domain-containing protein	NA	NA	NA	NA
WP_000012568.1\|4409261_4409921_-	YjfK family protein	NA	NA	NA	NA
WP_000511950.1\|4409970_4410669_-	PspA/IM30 family protein	NA	NA	NA	NA
WP_000220137.1\|4410687_4411089_-	DUF2170 family protein	NA	NA	NA	NA
WP_001293282.1\|4411215_4411947_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_000076316.1\|4412127_4414569_-	ribonuclease R	Q0GXV6	Lactococcus_phage	6.4e-67	33.1
WP_001177639.1\|4414607_4415033_-	nitric oxide-sensing transcriptional repressor NsrR	NA	NA	NA	NA
WP_000527955.1\|4415237_4416536_-	adenylosuccinate synthase	W5S5V7	Pithovirus	2.2e-66	35.9
WP_001089295.1\|4416639_4416837_-	DUF2065 domain-containing protein	NA	NA	NA	NA
WP_001232412.1\|4416918_4417923_-\|protease	protease modulator HflC	NA	NA	NA	NA
WP_000312479.1\|4417925_4419185_-\|protease	FtsH protease activity modulator HflK	A0A1L2CVV0	Pectobacterium_phage	3.6e-05	25.5

DBSCAN-SWA_11

4551150 : 4589824

Shigella_phage(42.55%)

capsid,lysis,terminase,tRNA,holin,integrase,tail,plate,protease,head,portal

attL 4545404:4545418|attR 4574431:4574445

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4545404:4545418	attL	NA	NA	NA	NA
WP_000918363.1\|4551150_4552566_-	replicative DNA helicase	O80281	Escherichia_phage	4.8e-200	78.3
WP_022646433.1\|4552648_4553632_+	quinone oxidoreductase	NA	NA	NA	NA
WP_000891408.1\|4553797_4554040_-	envelope stress response protein PspG	NA	NA	NA	NA
WP_000543828.1\|4554173_4555211_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_000332264.1\|4555299_4556397_+\|integrase	site-specific integrase	S5MDN5	Escherichia_phage	4.3e-212	100.0
WP_001217553.1\|4556458_4556707_+	DinI family protein	K7PLW4	Enterobacteria_phage	1.8e-38	100.0
WP_077526557.1\|4556934_4558119_+	acyltransferase	A0A2H4IZR3	uncultured_Caudovirales_phage	7.7e-50	34.8
WP_069904755.1\|4558130_4558730_-\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	4.7e-72	70.7
WP_089438600.1\|4558729_4559434_-\|tail	tail fiber protein	U5P0I1	Shigella_phage	9.2e-51	76.5
WP_000383548.1\|4559437_4560022_-	YmfQ family protein	O22003	Shigella_phage	1.1e-113	100.0
WP_089438601.1\|4560012_4561071_-\|plate	baseplate J/gp47 family protein	M1FQW3	Enterobacteria_phage	5.2e-199	98.6
WP_000424747.1\|4561057_4561483_-	hypothetical protein	U5P0R9	Shigella_phage	2.0e-80	99.3
WP_001259084.1\|4561482_4562031_-\|plate	phage baseplate assembly protein	U5P081	Shigella_phage	5.1e-97	98.9
WP_000999518.1\|4562030_4563110_-\|plate	baseplate protein	U5P0H6	Shigella_phage	9.1e-207	99.7
WP_128767295.1\|4563106_4564435_-	DNA circularization protein	Q8SBG8	Shigella_phage	2.5e-246	98.9
WP_089438603.1\|4564495_4566331_-\|tail	phage tail tape measure protein	Q8SBG9	Shigella_phage	3.2e-305	99.0
WP_023147733.1\|4566323_4566506_-	hypothetical protein	NA	NA	NA	NA
WP_000661054.1\|4566472_4566742_-\|tail	phage tail assembly protein	M1FPE4	Enterobacteria_phage	3.5e-43	100.0
WP_000090997.1\|4566741_4567098_-	hypothetical protein	U5P076	Shigella_phage	9.0e-63	99.2
WP_000155710.1\|4567097_4568594_-\|tail	tail sheath protein	M1FN90	Enterobacteria_phage	7.7e-273	99.0
WP_000497751.1\|4568577_4568748_-	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	9.3e-26	100.0
WP_000779292.1\|4568756_4569317_-	hypothetical protein	M1FQV7	Enterobacteria_phage	1.0e-105	100.0
WP_073461653.1\|4569313_4569820_-	hypothetical protein	M1FPE2	Enterobacteria_phage	1.9e-90	98.8
WP_115760314.1\|4569794_4570205_-\|head	phage head closure protein	M1FJ87	Enterobacteria_phage	3.5e-74	97.8
WP_000924829.1\|4570201_4570525_-\|head,tail	phage gp6-like head-tail connector protein	Q8SBH7	Shigella_phage	1.7e-52	99.1
WP_000766100.1\|4570603_4571833_-\|capsid	phage major capsid protein	Q8SBH8	Shigella_phage	7.6e-226	99.3
WP_000999805.1\|4571843_4572446_-\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	6.8e-111	100.0
WP_089438606.1\|4572438_4573665_-\|portal	phage portal protein	Q8SBI0	Shigella_phage	5.4e-240	98.8
WP_124939318.1\|4573812_4575309_-\|terminase	terminase large subunit	A0A1C9IIA1	Salmonella_phage	2.4e-290	98.8
4574431:4574445	attR	NA	NA	NA	NA
WP_000929174.1\|4575559_4576045_-\|terminase	phage terminase small subunit P27 family	Q8SBI1	Shigella_phage	2.1e-86	99.4
WP_001135093.1\|4576170_4576521_-	HNH endonuclease	M1FQV2	Enterobacteria_phage	7.5e-62	94.8
WP_001139680.1\|4576744_4576897_-	hypothetical protein	K7PKL2	Enterobacteria_phage	1.2e-21	100.0
WP_001393971.1\|4576884_4577352_-\|lysis	lysis protein	A0A2I6TCF9	Escherichia_phage	3.9e-74	97.4
WP_001393970.1\|4577348_4577825_-	glycoside hydrolase family protein	K7PKV2	Enterobacteria_phage	1.3e-85	96.8
WP_000781785.1\|4577828_4578170_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	1.1e-52	91.9
WP_089438607.1\|4578301_4578544_-	hypothetical protein	NA	NA	NA	NA
WP_015967852.1\|4578832_4579585_-	antitermination protein	Q8SBE4	Shigella_phage	2.8e-138	100.0
WP_032176009.1\|4579598_4580588_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.2e-194	99.4
WP_001061438.1\|4580595_4581405_-	KilA-N domain-containing protein	A5LH75	Enterobacteria_phage	8.2e-152	100.0
WP_000767113.1\|4581424_4581814_-	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	7.1e-69	100.0
WP_021513308.1\|4581810_4582137_-	LexA repressor	A5LH73	Enterobacteria_phage	2.3e-52	98.1
WP_001343335.1\|4582133_4582787_-	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	9.6e-127	99.1
WP_072178178.1\|4582786_4583281_-	PerC family transcriptional regulator	K7PJR0	Enterobacteria_phage	4.3e-87	98.8
WP_000128176.1\|4583277_4583646_-	hypothetical protein	U5P0A0	Shigella_phage	3.9e-69	98.4
WP_089438608.1\|4584226_4584439_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	1.2e-14	66.7
WP_000514174.1\|4584614_4585199_-	hypothetical protein	A0A1C9II13	Salmonella_phage	5.5e-57	60.9
WP_001231956.1\|4585226_4585424_-	hypothetical protein	K7PHB1	Enterobacterial_phage	1.1e-14	56.9
WP_000981537.1\|4585519_4586173_+	helix-turn-helix domain-containing protein	K7PLZ5	Enterobacterial_phage	5.7e-71	60.8
WP_021563905.1\|4586406_4586682_+	hypothetical protein	Q8SBF7	Shigella_phage	5.7e-49	100.0
WP_000141753.1\|4586599_4586845_-	hypothetical protein	NA	NA	NA	NA
WP_000135680.1\|4587282_4587645_+	hypothetical protein	Q8SBF8	Shigella_phage	8.6e-61	100.0
WP_023908886.1\|4587710_4588535_+	DUF2303 family protein	U5P439	Shigella_phage	3.0e-149	99.6
WP_023908887.1\|4588723_4589506_+	hypothetical protein	NA	NA	NA	NA
WP_001093916.1\|4589542_4589824_+	hypothetical protein	K7PGU0	Enterobacteria_phage	2.8e-43	96.8

DBSCAN-SWA_12

4619290 : 4635673

Burkholderia_phage(33.33%)

tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000619864.1\|4619290_4619638_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	2.2e-21	49.0
WP_022646418.1\|4620175_4620463_+	hypothetical protein	Q6QIC8	Burkholderia_phage	3.9e-16	48.6
WP_000266448.1\|4620465_4621071_+	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	3.3e-57	57.1
WP_000777272.1\|4621083_4621398_+	membrane protein	Q5ZQY8	Pseudomonas_phage	9.2e-19	43.2
WP_022646417.1\|4621542_4621998_+	hypothetical protein	NA	NA	NA	NA
WP_000875310.1\|4621994_4622192_+	hypothetical protein	NA	NA	NA	NA
WP_022646416.1\|4622181_4623606_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	7.0e-191	70.2
WP_000907502.1\|4623605_4624130_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	9.5e-69	69.0
WP_022646415.1\|4624180_4624498_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_015674804.1\|4624457_4624586_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_022646414.1\|4624687_4627063_+	hypothetical protein	A4JWL0	Burkholderia_virus	1.0e-56	26.0
WP_022646413.1\|4627062_4628016_+	hypothetical protein	A4JWL1	Burkholderia_virus	3.3e-35	50.8
WP_001269711.1\|4628015_4628225_+	membrane protein	A4JWL2	Burkholderia_virus	1.3e-16	60.3
WP_022646412.1\|4628212_4629253_+	phage late control D family protein	A4JWL3	Burkholderia_virus	2.0e-73	45.1
WP_000679403.1\|4629262_4629964_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	6.4e-12	36.3
WP_022646411.1\|4630062_4630422_+	hypothetical protein	Q6QIA0	Burkholderia_phage	1.1e-34	64.2
WP_038432214.1\|4630412_4631390_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.4e-86	47.8
WP_022646409.1\|4631382_4632099_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	3.1e-22	37.2
WP_022646408.1\|4632101_4633712_+\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	3.8e-84	39.1
WP_022646407.1\|4633708_4634416_+	DUF4376 domain-containing protein	A0A0E3JQ06	Enterobacteria_phage	5.3e-14	42.4
WP_022646406.1\|4634412_4634868_+	hypothetical protein	F6MIM0	Haemophilus_phage	6.6e-26	42.7
WP_022646405.1\|4634881_4635673_-	nucleotidyltransferase domain-containing protein	A0A2D1GQQ2	Pseudomonas_phage	2.0e-46	45.1

DBSCAN-SWA_13

5124595 : 5137826

Morganella_phage(33.33%)

integrase

attL 5122509:5122523|attR 5141735:5141749

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5122509:5122523	attL	NA	NA	NA	NA
WP_063082446.1\|5124595_5127217_-	transglycosylase SLT domain-containing protein	A0A0F6R8M6	Escherichia_coli_O157_typing_phage	3.9e-70	37.8
WP_000995640.1\|5127313_5127520_-	hypothetical protein	NA	NA	NA	NA
WP_001580975.1\|5127885_5128302_-	hypothetical protein	A0A077SLR9	Escherichia_phage	1.2e-21	71.0
WP_001580977.1\|5128282_5128780_-	ProQ/FinO family protein	Q2A0A1	Sodalis_phage	6.0e-12	46.1
WP_140028043.1\|5128816_5129209_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_021543047.1\|5129451_5131578_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	2.4e-174	53.5
WP_000721275.1\|5131574_5131877_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_001336359.1\|5131879_5132137_-	hypothetical protein	NA	NA	NA	NA
WP_111961088.1\|5132129_5132465_-	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_140028044.1\|5132538_5132736_+	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	7.3e-06	42.6
WP_023151911.1\|5132793_5132991_+	hypothetical protein	NA	NA	NA	NA
WP_021549395.1\|5133159_5133717_-	hypothetical protein	A0A1W6JPH8	Morganella_phage	1.1e-51	61.6
WP_063082445.1\|5133709_5134453_-	antA/AntB antirepressor family protein	A0A0R6PJV6	Moraxella_phage	1.6e-21	42.0
WP_021568517.1\|5134445_5135144_-	hypothetical protein	A0A0S2SYC0	Pseudomonas_phage	1.1e-11	38.7
WP_001336356.1\|5135218_5135437_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_001355495.1\|5136557_5137826_-\|integrase	site-specific integrase	A0A1W6JPG6	Morganella_phage	2.3e-193	78.6
5141735:5141749	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP040922

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

9001 : 51701

Escherichia_phage(44.44%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_140028060.1\|9001_10370_+\|transposase	IS3-like element IS150 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	2.4e-111	99.5
WP_001312861.1\|10568_10727_+	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
WP_001426396.1\|10946_11177_+	hypothetical protein	NA	NA	NA	NA
WP_032143370.1\|11227_11416_+	hypothetical protein	NA	NA	NA	NA
WP_140028061.1\|11356_11584_-	hypothetical protein	NA	NA	NA	NA
WP_032165723.1\|11503_11623_+	hypothetical protein	NA	NA	NA	NA
WP_000107535.1\|11647_11935_+	hypothetical protein	NA	NA	NA	NA
WP_001234469.1\|12053_12875_+	DUF945 domain-containing protein	A0A2C9CYF8	Yersinia_phage	4.4e-44	38.2
WP_000243712.1\|13171_13774_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_001151566.1\|14104_14488_+	relaxosome protein TraM	NA	NA	NA	NA
WP_001348626.1\|14621_15299_+	PAS domain-containing protein	NA	NA	NA	NA
WP_001254388.1\|15386_15614_+	conjugal transfer relaxosome protein TraY	NA	NA	NA	NA
WP_000338606.1\|15647_16010_+	type IV conjugative transfer system pilin TraA	NA	NA	NA	NA
WP_001617873.1\|16968_17253_+	type-F conjugative transfer system pilin chaperone TraQ	NA	NA	NA	NA
WP_000059829.1\|17239_17785_+	type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB	NA	NA	NA	NA
WP_071571857.1\|17714_18062_+	P-type conjugative transfer protein TrbJ	NA	NA	NA	NA
WP_001348758.1\|18009_18435_+	F-type conjugal transfer protein TrbF	NA	NA	NA	NA
WP_000944328.1\|18421_19795_+	conjugal transfer protein TraH	NA	NA	NA	NA
WP_001007062.1\|19791_22611_+	conjugal transfer mating pair stabilization protein TraG	NA	NA	NA	NA
WP_000605862.1\|22629_23127_+	entry exclusion protein	NA	NA	NA	NA
WP_000850429.1\|23158_23890_+	complement resistance protein TraT	NA	NA	NA	NA
WP_000199914.1\|24092_24872_+	hypothetical protein	NA	NA	NA	NA
WP_047605472.1\|24868_27094_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA
WP_001617867.1\|27093_32364_+	conjugative transfer relaxase/helicase TraI	NA	NA	NA	NA
WP_000205718.1\|32383_33130_+	type-F conjugative transfer system pilin acetylase TraX	A0A077JBM8	Xanthomonas_phage	3.2e-09	30.9
WP_000139341.1\|33184_33745_+	fertility inhibition protein FinO	NA	NA	NA	NA
WP_013023861.1\|33875_34088_+	hypothetical protein	NA	NA	NA	NA
WP_023144756.1\|34958_35093_+	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
WP_001300609.1\|35568_36351_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.0e-139	100.0
WP_000255944.1\|36347_37370_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_072258247.1\|37450_37603_+	replication protein A	NA	NA	NA	NA
WP_031943482.1\|37839_37914_+	RepA leader peptide Tap	NA	NA	NA	NA
WP_000130640.1\|37906_38764_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_012311408.1\|39127_39514_+	hypothetical protein	NA	NA	NA	NA
WP_000616807.1\|39703_40357_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000557619.1\|40449_40707_+	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA
WP_000439434.1\|40708_41041_+	hypothetical protein	NA	NA	NA	NA
WP_001262765.1\|41325_42636_+	DUF262 domain-containing protein	NA	NA	NA	NA
WP_000027057.1\|42912_43773_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001067855.1\|44014_44719_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000480968.1\|45598_46435_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_110221376.1\|46434_46998_-	phosphotransferase	NA	NA	NA	NA
WP_024946709.1\|47056_50059_-\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	5.2e-252	46.6
WP_024946710.1\|50201_51701_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	7.1e-16	25.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP040921

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040921_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040921_1

27774-27868

Orphan

Consensus_repeat	Method
TATAGATTTATATAATTATATAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040921_1

>merge|NZ_CP040921|1|27774-27868|CRISPRCasFinder
TATATGATTATAGATTTATATAATTATATAAAACGCTTTTCATCAGCCAAAAGTTGGTTATGCTTACCTCGTTCTATAAATATAGATTTATAGAA

>NZ_CP040921|1|1|27774-27868|CRISPRCasFinder
TATATGATTATAGATTTATATAA	TTATATAAAACGCTTTTCATCAGCCAAAAGTTGGTTATGCTTACCTCGT
TCTATAAATATAGATTTATAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040921.1\|WP_001705004.1\|22866_23934_-\|DUF3560-domain-containing-protein	unknown	unknown	gnl\|CDD\|371890
NZ_CP040921.1\|WP_000183351.1\|29975_30167_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040921.1\|WP_000156167.1\|27899_28553_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|349760
NZ_CP040921.1\|WP_000730008.1\|28596_28845_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040921.1\|WP_000269912.1\|34357_34705_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|227028
NZ_CP040921.1\|WP_000823235.1\|22507_22789_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238042
NZ_CP040921.1\|WP_032154031.1\|31340_31976_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040921.1\|WP_032154032.1\|30163_31306_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378443
NZ_CP040921.1\|WP_004105269.1\|25958_26453_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040921.1\|WP_001014473.1\|24812_25217_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374800
NZ_CP040921.1\|WP_004105266.1\|27376_27751_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040921.1\|WP_016240784.1\|32985_33411_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040921.1\|WP_001259436.1\|34058_34358_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|372700
NZ_CP040921.1\|WP_004105278.1\|22145_22511_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040921.1\|WP_039052397.1\|32632_32884_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|274805
NZ_CP040921.1\|WP_001523092.1\|25446_25962_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040921.1\|WP_001523084.1\|33514_33895_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040921.1\|WP_001250512.1\|24103_24481_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|335398
NZ_CP040921.1\|WP_000100624.1\|25216_25450_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040921.1\|WP_000839976.1\|26627_27284_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|197775

Protein	Function_ID	Function_description	E-value
NZ_CP040921.1\|WP_001014473.1\|24812_25217_-\|hypothetical-protein	gnl\|CDD\|374800	pfam16786, RecA_dep_nuc, Recombination enhancement, RecA-dependent nuclease. REF is a family of P1-like phage RecA-dependent nucleases. It does not appear to act as a positive RecA regulator. It is a new kind of enzyme, a RecA-dependent nuclease.	1.19851e-08
NZ_CP040921.1\|WP_001250512.1\|24103_24481_-\|hypothetical-protein	gnl\|CDD\|335398	pfam03610, EIIA-man, PTS system fructose IIA component.	0.00751429
NZ_CP040921.1\|WP_039052397.1\|32632_32884_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|274805	TIGR03830, transcriptional_regulator_XRE_family, putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.	1.019e-06
NZ_CP040921.1\|WP_000156167.1\|27899_28553_+\|ParA-family-protein	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	2.44742e-15
NZ_CP040921.1\|WP_001259436.1\|34058_34358_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|372700	pfam13744, HTH_37, Helix-turn-helix domain. Members of this family contains a DNA-binding helix-turn-helix domain.	4.59329e-09
NZ_CP040921.1\|WP_000269912.1\|34357_34705_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|227028	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown].	3.22993e-62
NZ_CP040921.1\|WP_001705004.1\|22866_23934_-\|DUF3560-domain-containing-protein	gnl\|CDD\|371890	pfam12083, DUF3560, Domain of unknown function (DUF3560). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain has a conserved GHHSE sequence motif.	2.81091e-33
NZ_CP040921.1\|WP_000823235.1\|22507_22789_-\|hypothetical-protein	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	0.00025242
NZ_CP040921.1\|WP_032154032.1\|30163_31306_+\|hypothetical-protein	gnl\|CDD\|378443	pfam10543, ORF6N, ORF6N domain. This domain was identified by Iyer and colleagues.	4.55495e-23
NZ_CP040921.1\|WP_000839976.1\|26627_27284_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	1.99894e-10

>NZ_CP040921.1|WP_004105266.1|27376_27751_+|hypothetical-protein
MELHTANKNETLITAGIEIQALNIAIECMLCQIIDNEKDIDWIESILHLASEQKVCLKTALQYDVPAVSKLCQPLMAYNRAIISVCLMILDETPPLSDRSEAALTLSRKQRQLANQLISTIADL
>NZ_CP040921.1|WP_000839976.1|26627_27284_+|helix-turn-helix-domain-containing-protein
MKSNDENIKKEIGLRIQTLRKQSGMTAGDLQQVTGIGLSTLQNYEAGLRQPSIPAIKKIAHALKASAPYIACLTDNPFPPQNTNAPVIPGLVAIKNDIASHAGEKPVLAIEQEILRSKNINPSSLSVLQSNDELMSPTISPGSQVLINTDDTEIHEGIYALEDRNGLVVLRHCRVIPGDNAVMLSTERDAEMNTKHLNNEEFKRYKVLGRVVSVVNWL
>NZ_CP040921.1|WP_004105269.1|25958_26453_-|hypothetical-protein
MTFQEWVDENGGQIGVARKFCFTSSLIGAWYRFERFPRADNLTLLVAYSEGRINVQQWAADFAERQRQRSDGTSVRQNKIKGNLPVNCLSRLKAVFSELGMPAERCNLRGPRFIARWKHSHVTVSEVRDAITVLELKNKDSSDIELIHKEISNARRSALGRLEE
>NZ_CP040921.1|WP_001523092.1|25446_25962_-|hypothetical-protein
MMILAFFGDNHQIQSQVVHYLDQTIKGFVIDHIDNDSKRLSVEQKIGGVQRLVASRNRRDTVTVVTGITEVMEYQMLLHRGAVFCVLPGILPAILARGFVPIDESFLYVTPSRSLLDTEAKRRIYMMPDEAFSECYRREMRLGKREVSVVRDGRFLRSRTVKSTRNDGGHQ
>NZ_CP040921.1|WP_000100624.1|25216_25450_-|hypothetical-protein
MSSYVRGAAMHCQNPQFWRFLTSKTGKNVSNSSEASVILREFCGISSRKELAKNYAARSMYVQLINEFNLFINGKGR
>NZ_CP040921.1|WP_001014473.1|24812_25217_-|hypothetical-protein
MNGRTPTKKEKLYIQAVLTHVGCIACIIDGREIENPELWTELHHDPDYGSVDENCHFHSFGLCAPHHRGVVPGGGRVPPHIAVRHPPLSNCARFVERYGTDEFLCAQTWELLPQSVKDEIGFDLSLGEVPGDTK
>NZ_CP040921.1|WP_001250512.1|24103_24481_-|hypothetical-protein
MRRDLDSLFELWALWVRNGCNARSGFASMLEMMMVTRCQFTGGGGAPNDSLETSIEGAVTALTVVDETAALVVRIEYGAWEIRGLDINAPHIDKAHALSLSLRQYRRKLAKARAYVVDYLKKRRE
>NZ_CP040921.1|WP_001705004.1|22866_23934_-|DUF3560-domain-containing-protein
MNKQVIISDWINNPNSLLSTDTGYLLRHVNGRMVKSDEHETFFFVEDDGRIYEDGYSYEAQTGCIPAELVDVTEDLRKAWLEQQQRGDDYVNTYQERQNARLARYIARAEKARKEGAVAHKRAHDLLDVIPLGQPILVDHYSAKGHRRRLSKADALFRKAFVECESKASHYESKAAGVGRNGISSDDPDALFKLLRKLQGCMKSHVKMKAANKAIRKYKKDQIQQLSALIDLRFTESEAKELLAGDFCGHIGFPSYALSNNNAEIKRLQSRIKELESVKSVTGAQREEYDGFSMEIDPEDNRILFYFPGKPEANIRSLLKSRAFKWSPTRNAWVRKITPNALADARYLKESLLKA
>NZ_CP040921.1|WP_000823235.1|22507_22789_-|hypothetical-protein
MKRKIINPQDVINFLTDHPCSKVDVIAEHIGVSQNSMRCRLRSMVAEGQITTRKINGCLYYSAKPELPFGMNPNSMLFNTLLAKVKPLRGAVA
>NZ_CP040921.1|WP_004105278.1|22145_22511_-|hypothetical-protein
MSIKTHTGIIITNDGEKRVKLRETPTTWCVGPKETYRKEDGRRCGAPLSRRRLLLSTIKPIGQVEQPTTPVTKISDKSLANLIADADKVLERNTPVADEEWWQDFRAAMLELQERRREELK
>NZ_CP040921.1|WP_000156167.1|27899_28553_+|ParA-family-protein
MTISVGIFNGKGGVTKSTIARALAVAYAKAGWNVCLIDMDVLNGTVTRWVQRRMANNIEPAIAAQPCGTPSQVQKIIESEVYDLVIVDGGAYASESVPKLSEFLDMVILPTRFSTDDLETTVNTAHGIVKKGVPIKKICMVFSGAAENEADYIEAQEYLANTPYFVVDKYIPHKPALSKAQDKGLSLIECSYVAPRKKADDVIQGIINQLEALTTAA
>NZ_CP040921.1|WP_000730008.1|28596_28845_+|hypothetical-protein
MAAPSKPPKKNSKGVPPSIEQPQVFDPTETPTRTKSGGAQMAFNVDPEFKREYKTFASSMDMSLKEVLTKSFELLKAQYNQK
>NZ_CP040921.1|WP_000183351.1|29975_30167_+|hypothetical-protein
MTNLPHDYYVNLVKILLKKASYADKFRLAEIIEREAMRIASNDNAVSDAKISLVTKVVMGGAK
>NZ_CP040921.1|WP_032154032.1|30163_31306_+|hypothetical-protein
MKTLPTVNTLQPILHNQIPVITSELLAQLYGTKIKNISDNFLNNTTRFVAGKHYFKIEKNELREFKNRPETIGLVGKNARSLILWTERGAARHAKMLETDQAWDVFERLEDCYFNQNAQTAATVTVSPNNAREVVDTLNAKPMFYIKVCNNEPLTTSADVAQAFSTTNNSIVMAIDALRIPRTAAARHFFKEQRPLEGSDREITIYRMTKDGFTLLMESIDGPGVKDIKLAYIEAFNAISSVLKTQYERDLAKRLYQEKTIIRAATEHNRLLTEPNYRKELIKEFDKATGKTKAALNLPAMTQENVISALLLDLLRNARALISFDENLNPQLKLLPPTGKVVDQADHNSILSVLDANLPARTLQELIKISADKLAAGAKP
>NZ_CP040921.1|WP_032154031.1|31340_31976_-|hypothetical-protein
MGMLVAFIISLILCFFVVRGAYRKQCASSSGSRFKAVLVSGFLGIATFVVVNTLAAVTLIPEDSSTTATTGAAFDGVTVDKFKQLYNDDLEGIATSGKATSTIRIKSVKQGNNTVEFAINSSVNGRARVDKDGKISELLWRVSKPNSDSLLSMAVAVEVLDASSERDTVIAQLEQIVKSDMQKAEFKTKRGEYYVSRDKSGHVSLLITPKY
>NZ_CP040921.1|WP_039052397.1|32632_32884_-|helix-turn-helix-domain-containing-protein
MTGYELKLWRRGMNWTQERAAEEFGISLATYKRYEKGGPPSVMEMAIRVLSFDDMVKDLSHLDKDAILLRLQTLVWEKVKVSS
>NZ_CP040921.1|WP_016240784.1|32985_33411_+|hypothetical-protein
MSSSAFVTVVTGVSVFVLGQLIVKGAIEPYISFREQLGKISNLLLCNQAKIVNPGSNLKPEIIHDLKDSAAQLMAKYSTLPFYIKKLHIGFRLVPSATEILGAAQNLNYIASIHEGKTGENPSKHLEEIGHMLKIPTTYSS
>NZ_CP040921.1|WP_001523084.1|33514_33895_-|hypothetical-protein
MSMIKIRKNAFLKIQTILAGSVGVICRSSSSRIDDGYDDEYRLSSCDEALTWLKENQERAQVYLETENGNQMLRISGRYGFETTFMAYFNQAYFDKELAWYTDRMSKSEPAPITPPNDKPFLFLVK
>NZ_CP040921.1|WP_001259436.1|34058_34358_-|XRE-family-transcriptional-regulator
MRTLDEVIASRSPESQARIKEMADEMILEVGLQMMREELQLSQKQVAEAMGISQPAVTKLEQRGNDLKLATLKRYVEAMGGKLSLDVELPTGKRIAFNI
>NZ_CP040921.1|WP_000269912.1|34357_34705_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MWTVLFSQRFDDWLNEQEDALQEKVLADLKKLQVYGPELPRPYADTVKGSRYKNMKELRVQFSGRPIRAFYAFDPIRRAIVLCAGDKSNDKRFYEKLVRIAEDEFAAHLNTLESK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040921_1	1.1\|27797\|49\|NZ_CP040921\|CRISPRCasFinder	27797-27845	49	NZ_CP040921	Escherichia coli strain FC853_EC plasmid p853EC2, complete sequence	27797-27845	0	1.0

1. spacer 1.1|27797|49|NZ_CP040921|CRISPRCasFinder matches to NZ_CP040921 (Escherichia coli strain FC853_EC plasmid p853EC2, complete sequence) position: , mismatch: 0, identity: 1.0

ttatataaaacgcttttcatcagccaaaagttggttatgcttacctcgt	CRISPR spacer
ttatataaaacgcttttcatcagccaaaagttggttatgcttacctcgt	Protospacer
*************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

751 : 49402

Vibrio_phage(37.14%)

capsid,portal,terminase,plate,holin,tail,protease,transposase,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000450805.1\|751_1033_-	hypothetical protein	A0A0C5AEP1	Bacteriophage	1.0e-05	37.4
WP_004105328.1\|1042_1564_-\|tail	phage major tail tube protein	A0A067ZJA9	Vibrio_phage	1.2e-50	57.8
WP_004105325.1\|1580_3044_-	hypothetical protein	A0A059WKP9	Vibrio_phage	4.2e-146	53.6
WP_001284546.1\|3043_3334_-	hypothetical protein	NA	NA	NA	NA
WP_000609134.1\|3334_3820_-	hypothetical protein	A0A067ZIL8	Vibrio_phage	3.0e-16	37.4
WP_004105322.1\|3816_4161_-	ATP-binding sugar transporter from pro-phage family protein	NA	NA	NA	NA
WP_001523066.1\|4160_4553_-	hypothetical protein	NA	NA	NA	NA
WP_004105318.1\|4553_5597_-\|capsid	major capsid protein	A0A059WRQ2	Vibrio_phage	4.0e-74	47.9
WP_004105317.1\|5617_6001_-\|head	bacteriophage lambda head decoration D family protein	NA	NA	NA	NA
WP_032150711.1\|6010_7078_-\|protease	Clp protease ClpP	A0A067ZG37	Vibrio_phage	1.3e-77	48.2
WP_001022885.1\|7067_8642_-\|portal	phage portal protein	A0A067ZJA4	Vibrio_phage	1.2e-191	65.7
WP_001058287.1\|8638_8878_-	hypothetical protein	A0A067ZJ01	Vibrio_phage	6.8e-14	52.0
WP_001406385.1\|8889_10746_-\|terminase	phage terminase large subunit family protein	A0A059WKL6	Vibrio_phage	8.5e-237	62.7
WP_001019009.1\|10751_11303_-	hypothetical protein	K4ICN8	Acidithiobacillus_phage	1.7e-07	29.4
WP_001185429.1\|11302_11893_-	ParB N-terminal domain-containing protein	A0A067ZI74	Vibrio_phage	1.6e-40	58.5
WP_001705017.1\|12450_13146_-	hypothetical protein	A0A1W6JTE1	Pseudomonas_phage	1.3e-28	33.8
WP_004105305.1\|13186_14560_-	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_023908957.1\|14559_15183_-	ParB N-terminal domain-containing protein	A0A0E3JS81	Verrucomicrobia_phage	2.4e-34	43.8
WP_000636451.1\|16025_16238_-	hypothetical protein	NA	NA	NA	NA
WP_001141358.1\|16215_16515_-	hypothetical protein	NA	NA	NA	NA
WP_001222808.1\|16589_16787_-	hypothetical protein	NA	NA	NA	NA
WP_000867916.1\|16786_17056_-	hypothetical protein	NA	NA	NA	NA
WP_023908958.1\|17167_17755_-	adenine methylase	G9L699	Escherichia_phage	7.1e-81	77.0
WP_023908959.1\|18432_18711_-	hypothetical protein	G8C7W1	Escherichia_phage	1.2e-17	51.7
WP_024180651.1\|18707_19253_-	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	3.0e-89	84.0
WP_000254764.1\|19236_19533_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.3e-27	63.7
WP_001271967.1\|19519_19915_-	membrane protein	K7PHB9	Enterobacterial_phage	6.1e-52	82.3
WP_023908960.1\|20105_20297_-	hypothetical protein	NA	NA	NA	NA
WP_023908961.1\|20293_21010_-	ead/Ea22-like family protein	A0A0F6TJR7	Escherichia_coli_O157_typing_phage	1.5e-69	92.6
WP_001705006.1\|21002_21347_-	hypothetical protein	NA	NA	NA	NA
WP_004105282.1\|21349_21961_-	hypothetical protein	M1F3E2	Salmonella_phage	5.2e-42	45.9
WP_001706266.1\|21957_22116_-	hypothetical protein	NA	NA	NA	NA
WP_004105278.1\|22145_22511_-	hypothetical protein	A0A2R2Z313	Escherichia_phage	3.1e-10	55.9
WP_000823235.1\|22507_22789_-	hypothetical protein	NA	NA	NA	NA
WP_001705004.1\|22866_23934_-	DUF3560 domain-containing protein	NA	NA	NA	NA
WP_001250512.1\|24103_24481_-	hypothetical protein	A0A2I7R3L8	Vibrio_phage	6.3e-06	35.1
WP_001014473.1\|24812_25217_-	hypothetical protein	NA	NA	NA	NA
WP_000100624.1\|25216_25450_-	hypothetical protein	NA	NA	NA	NA
WP_001523092.1\|25446_25962_-	hypothetical protein	NA	NA	NA	NA
WP_004105269.1\|25958_26453_-	hypothetical protein	NA	NA	NA	NA
WP_000839976.1\|26627_27284_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004105266.1\|27376_27751_+	hypothetical protein	NA	NA	NA	NA
WP_000156167.1\|27899_28553_+	ParA family protein	A0A219YB79	Aeromonas_phage	9.2e-21	32.5
WP_000730008.1\|28596_28845_+	hypothetical protein	NA	NA	NA	NA
WP_000183351.1\|29975_30167_+	hypothetical protein	NA	NA	NA	NA
WP_032154032.1\|30163_31306_+	hypothetical protein	B0FED5	Escherichia_phage	1.0e-51	89.2
WP_032154031.1\|31340_31976_-	hypothetical protein	NA	NA	NA	NA
WP_039052397.1\|32632_32884_-	helix-turn-helix domain-containing protein	A0A248SLB9	Klebsiella_phage	5.3e-09	54.9
WP_016240784.1\|32985_33411_+	hypothetical protein	A0A222YWI5	Escherichia_phage	3.6e-50	74.5
WP_001523084.1\|33514_33895_-	hypothetical protein	NA	NA	NA	NA
WP_001259436.1\|34058_34358_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_000269912.1\|34357_34705_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_000424604.1\|34949_35213_-	hypothetical protein	H6WRY4	Salmonella_phage	9.8e-14	46.2
WP_000356589.1\|35236_35524_-	hypothetical protein	NA	NA	NA	NA
WP_024171747.1\|36167_37004_-	replication initiator protein RepA	NA	NA	NA	NA
WP_001704996.1\|37629_38175_+	transferase	NA	NA	NA	NA
WP_001523080.1\|38138_38756_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	3.5e-86	80.9
WP_140028057.1\|38755_41602_-\|tail	phage tail protein	Q858V4	Yersinia_virus	1.4e-166	45.8
WP_140028058.1\|41632_42160_-\|tail	phage tail protein I	A0A219YA10	Aeromonas_phage	4.5e-10	36.2
WP_085947917.1\|42144_43418_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.4e-177	99.3
WP_001705026.1\|43542_44667_-\|plate	baseplate J/gp47 family protein	A0A0C5AEG2	Bacteriophage	4.9e-86	44.2
WP_001523074.1\|44663_44984_-	hypothetical protein	NA	NA	NA	NA
WP_000635200.1\|44980_45448_-\|tail	phage tail protein	NA	NA	NA	NA
WP_001523073.1\|45444_46065_-\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	1.0e-29	51.6
WP_004105332.1\|46067_47069_-	phage late control D family protein	A0A067ZG47	Vibrio_phage	1.3e-69	42.5
WP_071592412.1\|47058_47277_-	hypothetical protein	NA	NA	NA	NA
WP_064717798.1\|47269_49402_-\|tail	phage tail tape measure protein	A0A097P6S4	Vibrio_phage	3.7e-18	39.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040920

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP040919

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP040922

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP040921

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection