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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP038030 Rhodococcus ruber strain R1 chromosome, complete genome 4 crisprs Cas9_archaeal,csa3,cas3,WYL,c2c9_V-U4,DEDDh,DinG,cas4 0 2 1 0
NZ_CP038032 Rhodococcus ruber strain R1 plasmid unnamed2, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP038031 Rhodococcus ruber strain R1 plasmid unnamed1, complete sequence 0 crisprs RT 0 0 1 0

Results visualization

1. NZ_CP038030
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP038030_1 132452-132527 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP038030_2 3083055-3083131 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP038030_3 3610244-3610332 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP038030_4 5090979-5091075 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP038030_1 1.1|132477|26|NZ_CP038030|CRISPRCasFinder 132477-132502 26 NZ_CP029777 Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence 253176-253201 3 0.885
NZ_CP038030_1 1.1|132477|26|NZ_CP038030|CRISPRCasFinder 132477-132502 26 NC_015377 Burkholderia gladioli BSR3 plasmid bgla_2p, complete sequence 110204-110229 4 0.846
NZ_CP038030_1 1.1|132477|26|NZ_CP038030|CRISPRCasFinder 132477-132502 26 NZ_CP009155 Burkholderia pseudomallei strain TSV202 plasmid 1, complete sequence 154216-154241 5 0.808
NZ_CP038030_1 1.1|132477|26|NZ_CP038030|CRISPRCasFinder 132477-132502 26 NZ_CP049158 Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence 44549-44574 5 0.808
NZ_CP038030_1 1.1|132477|26|NZ_CP038030|CRISPRCasFinder 132477-132502 26 NZ_CP049318 Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence 44495-44520 5 0.808
NZ_CP038030_1 1.1|132477|26|NZ_CP038030|CRISPRCasFinder 132477-132502 26 NZ_CP023524 Burkholderia gladioli pv. gladioli strain FDAARGOS_389 plasmid unnamed, complete sequence 17120-17145 5 0.808
NZ_CP038030_1 1.1|132477|26|NZ_CP038030|CRISPRCasFinder 132477-132502 26 NZ_CP023524 Burkholderia gladioli pv. gladioli strain FDAARGOS_389 plasmid unnamed, complete sequence 64951-64976 5 0.808
NZ_CP038030_1 1.1|132477|26|NZ_CP038030|CRISPRCasFinder 132477-132502 26 NZ_CP033429 Burkholderia gladioli strain Burkholderia gladioli Co14 plasmid p1, complete sequence 14510-14535 5 0.808
NZ_CP038030_1 1.1|132477|26|NZ_CP038030|CRISPRCasFinder 132477-132502 26 NZ_CP033429 Burkholderia gladioli strain Burkholderia gladioli Co14 plasmid p1, complete sequence 50812-50837 5 0.808
NZ_CP038030_2 2.1|3083078|31|NZ_CP038030|CRISPRCasFinder 3083078-3083108 31 NZ_CP021083 Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence 41927-41957 8 0.742
NZ_CP038030_2 2.1|3083078|31|NZ_CP038030|CRISPRCasFinder 3083078-3083108 31 MT522001 Microbacterium phage Karate, complete genome 41572-41602 8 0.742
NZ_CP038030_2 2.1|3083078|31|NZ_CP038030|CRISPRCasFinder 3083078-3083108 31 NC_005262 Burkholderia cepacia phage Bcep22, complete genome 54330-54360 8 0.742
NZ_CP038030_2 2.1|3083078|31|NZ_CP038030|CRISPRCasFinder 3083078-3083108 31 NC_019917 Burkholderia phage BcepMigl, complete genome 53620-53650 9 0.71
NZ_CP038030_2 2.1|3083078|31|NZ_CP038030|CRISPRCasFinder 3083078-3083108 31 FJ937737 Burkholderia cenocepacia phage BcepIL02, complete genome 53288-53318 9 0.71
NZ_CP038030_2 2.1|3083078|31|NZ_CP038030|CRISPRCasFinder 3083078-3083108 31 NC_012743 Burkholderia phage BcepIL02, complete genome 53288-53318 9 0.71
NZ_CP038030_2 2.1|3083078|31|NZ_CP038030|CRISPRCasFinder 3083078-3083108 31 NZ_CP030074 Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence 210364-210394 9 0.71

1. spacer 1.1|132477|26|NZ_CP038030|CRISPRCasFinder matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 3, identity: 0.885

accactggcgcaggcctccgaaggcc	CRISPR spacer
gccactggcacaggccgccgaaggcc	Protospacer
.********.****** *********

2. spacer 1.1|132477|26|NZ_CP038030|CRISPRCasFinder matches to NC_015377 (Burkholderia gladioli BSR3 plasmid bgla_2p, complete sequence) position: , mismatch: 4, identity: 0.846

accactggcgcaggcctccgaaggcc	CRISPR spacer
agcgctgccgcaggcctccgaaggca	Protospacer
* *.*** ***************** 

3. spacer 1.1|132477|26|NZ_CP038030|CRISPRCasFinder matches to NZ_CP009155 (Burkholderia pseudomallei strain TSV202 plasmid 1, complete sequence) position: , mismatch: 5, identity: 0.808

accactggcgcaggcctccgaaggcc	CRISPR spacer
ggcgctgccgcaggcctccgaaggca	Protospacer
. *.*** ***************** 

4. spacer 1.1|132477|26|NZ_CP038030|CRISPRCasFinder matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 5, identity: 0.808

accactggcgcaggcctccgaaggcc	CRISPR spacer
ggcactgacgcaggcctccgaacgca	Protospacer
. *****.************** ** 

5. spacer 1.1|132477|26|NZ_CP038030|CRISPRCasFinder matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 5, identity: 0.808

accactggcgcaggcctccgaaggcc	CRISPR spacer
ggcactgacgcaggcctccgaacgca	Protospacer
. *****.************** ** 

6. spacer 1.1|132477|26|NZ_CP038030|CRISPRCasFinder matches to NZ_CP023524 (Burkholderia gladioli pv. gladioli strain FDAARGOS_389 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.808

accactggcgcaggcctccgaaggcc	CRISPR spacer
ggcgctgccgcaggcctccgaaggca	Protospacer
. *.*** ***************** 

7. spacer 1.1|132477|26|NZ_CP038030|CRISPRCasFinder matches to NZ_CP023524 (Burkholderia gladioli pv. gladioli strain FDAARGOS_389 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.808

accactggcgcaggcctccgaaggcc	CRISPR spacer
ggcgctgccgcaggcctccgaaggca	Protospacer
. *.*** ***************** 

8. spacer 1.1|132477|26|NZ_CP038030|CRISPRCasFinder matches to NZ_CP033429 (Burkholderia gladioli strain Burkholderia gladioli Co14 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.808

accactggcgcaggcctccgaaggcc	CRISPR spacer
ggcgctgccgcaggcctccgaaggca	Protospacer
. *.*** ***************** 

9. spacer 1.1|132477|26|NZ_CP038030|CRISPRCasFinder matches to NZ_CP033429 (Burkholderia gladioli strain Burkholderia gladioli Co14 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.808

accactggcgcaggcctccgaaggcc	CRISPR spacer
ggcgctgccgcaggcctccgaaggca	Protospacer
. *.*** ***************** 

10. spacer 2.1|3083078|31|NZ_CP038030|CRISPRCasFinder matches to NZ_CP021083 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence) position: , mismatch: 8, identity: 0.742

ggcgcgcgccacgtcgtcaaggtcgtctccc	CRISPR spacer
ggcgcgcgccacgtcgtccaggcgcaccgac	Protospacer
****************** ***.   *.  *

11. spacer 2.1|3083078|31|NZ_CP038030|CRISPRCasFinder matches to MT522001 (Microbacterium phage Karate, complete genome) position: , mismatch: 8, identity: 0.742

ggcgcgcgccacgtcgtcaaggtcgtctccc	CRISPR spacer
gacgcgcgccacgtcgtcaatggcgttcttg	Protospacer
*.****************** * ***.... 

12. spacer 2.1|3083078|31|NZ_CP038030|CRISPRCasFinder matches to NC_005262 (Burkholderia cepacia phage Bcep22, complete genome) position: , mismatch: 8, identity: 0.742

ggcgcgcgccacgtcgtcaaggtcgtctccc	CRISPR spacer
gaggcgcgccacgtcgtcgaggtcgagcacg	Protospacer
*. ***************.******  . * 

13. spacer 2.1|3083078|31|NZ_CP038030|CRISPRCasFinder matches to NC_019917 (Burkholderia phage BcepMigl, complete genome) position: , mismatch: 9, identity: 0.71

ggcgcgcgccacgtcgtcaaggtcgtctccc	CRISPR spacer
caggcgcgccacgtcgtcgaggtcgagcacg	Protospacer
 . ***************.******  . * 

14. spacer 2.1|3083078|31|NZ_CP038030|CRISPRCasFinder matches to FJ937737 (Burkholderia cenocepacia phage BcepIL02, complete genome) position: , mismatch: 9, identity: 0.71

ggcgcgcgccacgtcgtcaaggtcgtctccc	CRISPR spacer
caggcgcgccacgtcgtcgaggtcgagcacg	Protospacer
 . ***************.******  . * 

15. spacer 2.1|3083078|31|NZ_CP038030|CRISPRCasFinder matches to NC_012743 (Burkholderia phage BcepIL02, complete genome) position: , mismatch: 9, identity: 0.71

ggcgcgcgccacgtcgtcaaggtcgtctccc	CRISPR spacer
caggcgcgccacgtcgtcgaggtcgagcacg	Protospacer
 . ***************.******  . * 

16. spacer 2.1|3083078|31|NZ_CP038030|CRISPRCasFinder matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

ggcgcgcgccacgtcgtcaaggtcgtctccc	CRISPR spacer
atggcgcgccaagtggtcaaggtcgtggtca	Protospacer
.  ******** ** ***********  .* 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2563875 : 2572060 9 Mycobacterium_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP038031
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 8161 : 74024 50 Mycobacterium_phage(36.36%) protease,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage