CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040076	Escherichia coli strain A1_181 plasmid p_unnamed7.3	0 crisprs	NA	0	0	0	0
NZ_CP040074	Escherichia coli strain A1_181 plasmid p_unnamed7.1	0 crisprs	NA	0	0	0	0
NZ_CP040068	Escherichia coli strain A1_181 plasmid p_unnamed1_KPC2, complete sequence	0 crisprs	DEDDh	0	0	2	0
NZ_CP040070	Escherichia coli strain A1_181 plasmid p_unnamed3, complete sequence	0 crisprs	NA	0	0	2	0
NZ_CP040067	Escherichia coli strain A1_181 chromosome, complete genome	11 crisprs	RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,cas3,DEDDh,c2c9_V-U4,DinG	1	20	10	1
NZ_CP040073	Escherichia coli strain A1_181 plasmid p_unnamed6, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP040069	Escherichia coli strain A1_181 plasmid p_unnamed2, complete sequence	0 crisprs	NA	0	0	2	0
NZ_CP040075	Escherichia coli strain A1_181 plasmid p_unnamed7.2	0 crisprs	NA	0	0	0	0
NZ_CP040071	Escherichia coli strain A1_181 plasmid p_unnamed4, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP040072	Escherichia coli strain A1_181 plasmid p_unnamed5, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040067_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040067_1

647622-647761

Orphan

Consensus_repeat	Method
TTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040067_1

>merge|NZ_CP040067|1|647622-647761|CRISPRCasFinder
TTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAACAGCAGTCGGATGCGGCGTAAACACCTTATCTGACCTACGTTTTGTGTCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCA

>NZ_CP040067|1|1|647622-647761|CRISPRCasFinder
TTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCA	ACAGCAGTCGGATGCGGCGTAAACACCTTATCTGACCTACGT
TTTGTGTCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040067.1\|WP_001295551.1\|645821_646457_+\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187560
NZ_CP040067.1\|WP_000044770.1\|656751_657447_-\|molecular-chaperone	unknown	unknown	gnl\|CDD\|225663
NZ_CP040067.1\|WP_000249160.1\|649322_651359_-\|penicillin-binding-protein-activator	unknown	unknown	gnl\|CDD\|225649
NZ_CP040067.1\|WP_001301318.1\|641300_642179_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
NZ_CP040067.1\|WP_000816988.1\|652326_653418_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|366088
NZ_CP040067.1\|WP_001045434.1\|657526_658111_-\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP040067.1\|WP_001375267.1\|643391_643916_+\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696
NZ_CP040067.1\|WP_000130392.1\|640087_641095_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182505
NZ_CP040067.1\|WP_000908554.1\|643909_644413_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP040067.1\|WP_000421305.1\|642187_643183_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP040067.1\|WP_000037608.1\|645175_645694_-\|protein/nucleic-acid-deglycase	unknown	unknown	gnl\|CDD\|153228
NZ_CP040067.1\|WP_000646033.1\|647774_648350_-\|divisome-associated-lipoprotein-YraP	unknown	unknown	gnl\|CDD\|182907
NZ_CP040067.1\|WP_000189314.1\|644399_644702_-\|DNA-damage-response-exodeoxyribonuclease-YhbQ	unknown	unknown	gnl\|CDD\|178979
NZ_CP040067.1\|WP_000246837.1\|648969_649365_-\|YraN-family-protein	unknown	unknown	gnl\|CDD\|129354
NZ_CP040067.1\|WP_001158034.1\|648359_648950_-\|DnaA-initiator-associating-protein-DiaA	unknown	unknown	gnl\|CDD\|182811
NZ_CP040067.1\|WP_000449030.1\|644752_645196_+\|YhbP-family-protein	unknown	unknown	gnl\|CDD\|235127
NZ_CP040067.1\|WP_001375265.1\|646529_647570_+\|permease	unknown	unknown	gnl\|CDD\|223773
NZ_CP040067.1\|WP_024167269.1\|653428_655801_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729
NZ_CP040067.1\|WP_001323952.1\|658511_659267_-\|galactosamine-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|182064
NZ_CP040067.1\|WP_000809262.1\|651423_652284_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|184956

Protein	Function_ID	Function_description	E-value
NZ_CP040067.1\|WP_001295551.1\|645821_646457_+\|NAD(P)H-binding-protein	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.89133e-65
NZ_CP040067.1\|WP_000044770.1\|656751_657447_-\|molecular-chaperone	gnl\|CDD\|225663	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion].	9.16141e-79
NZ_CP040067.1\|WP_000249160.1\|649322_651359_-\|penicillin-binding-protein-activator	gnl\|CDD\|225649	COG3107, LppC, Putative lipoprotein [General function prediction only].	6.33924e-141
NZ_CP040067.1\|WP_001301318.1\|641300_642179_-\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
NZ_CP040067.1\|WP_000816988.1\|652326_653418_-\|fimbrial-protein	gnl\|CDD\|366088	pfam00419, Fimbrial, Fimbrial protein.	3.34626e-21
NZ_CP040067.1\|WP_001045434.1\|657526_658111_-\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	1.76746e-31
NZ_CP040067.1\|WP_001375267.1\|643391_643916_+\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	8.79126e-85
NZ_CP040067.1\|WP_000130392.1\|640087_641095_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|182505	PRK10508, PRK10508, luciferase-like monooxygenase.	0
NZ_CP040067.1\|WP_000908554.1\|643909_644413_+\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	1.31299e-64
NZ_CP040067.1\|WP_000421305.1\|642187_643183_-\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	4.87234e-118
NZ_CP040067.1\|WP_000037608.1\|645175_645694_-\|protein/nucleic-acid-deglycase	gnl\|CDD\|153228	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.	6.06977e-86
NZ_CP040067.1\|WP_000646033.1\|647774_648350_-\|divisome-associated-lipoprotein-YraP	gnl\|CDD\|182907	PRK11023, PRK11023, divisome-associated lipoprotein YraP.	1.97056e-117
NZ_CP040067.1\|WP_000189314.1\|644399_644702_-\|DNA-damage-response-exodeoxyribonuclease-YhbQ	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	3.58629e-45
NZ_CP040067.1\|WP_000246837.1\|648969_649365_-\|YraN-family-protein	gnl\|CDD\|129354	TIGR00252, UPF0102_protein_HI_1656, TIGR00252 family protein. the scores for Mycobacterium tuberculosis and Treponema pallidum are low considering the alignment [Hypothetical proteins, Conserved].	3.92681e-63
NZ_CP040067.1\|WP_001158034.1\|648359_648950_-\|DnaA-initiator-associating-protein-DiaA	gnl\|CDD\|182811	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional.	5.61903e-143
NZ_CP040067.1\|WP_000449030.1\|644752_645196_+\|YhbP-family-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	2.19601e-100
NZ_CP040067.1\|WP_001375265.1\|646529_647570_+\|permease	gnl\|CDD\|223773	COG0701, COG0701, Predicted permeases [General function prediction only].	4.11883e-63
NZ_CP040067.1\|WP_024167269.1\|653428_655801_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP040067.1\|WP_001323952.1\|658511_659267_-\|galactosamine-6-phosphate-isomerase	gnl\|CDD\|182064	PRK09762, PRK09762, galactosamine-6-phosphate isomerase; Provisional.	1.51027e-147
NZ_CP040067.1\|WP_000809262.1\|651423_652284_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|184956	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional.	0

>NZ_CP040067.1|WP_001375265.1|646529_647570_+|permease
MTGQSSSQAATPIQWWKPALFFLVVIAGLWYVKWEPYYGKAFTAAETHSIGKSILAQADANPWQAALDYAMIYFLAVWKAAVLGVILGSLIQVLIPRDWLLRTLGQSRFRGTLLGTLFSLPGMMCTCCAAPVAAGMRRQQVSMGGALAFWMGNPVLNPATLVFMGFVLSWGFAAIRLVAGLVMVLLIATLVQKWVRETPQTQAPVEIDIPEAQGGFFSRWGRALWTLFWSTIPVYILAVLVLGAARVWLFPHADGTVDNSLMWVVAMAVAGCLFVIPTAAEIPIVQTMMLAGMGTAPALALLMTLPAVSLPSLIMLRKAFPAKALWLTGAMVAVSGVIVGGLALLF
>NZ_CP040067.1|WP_001295551.1|645821_646457_+|NAD(P)H-binding-protein
MSQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGVFNPHDPQLTDALAQVTDPIDIVFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPKLTIARPSMLLGDRSKQRMNETLFAPLFRLLPGNWKSIDARDVARVMLAESMRPEHEGVTILSSSELRKRAE
>NZ_CP040067.1|WP_000037608.1|645175_645694_-|protein/nucleic-acid-deglycase
MSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLGA
>NZ_CP040067.1|WP_000449030.1|644752_645196_+|YhbP-family-protein
METLIAISRWLAKQHVVTWCVQQEGELWCANAFYLFDAQKVAFYILTEEKTRHAQMSGPQAAVAGTVNGQPKTVALIRGVQFKGEIRRLEGEESDLARKAYNRRFPVARMLSAPVWEIRLDEIKFTDNTLGFGKKMIWLRDSGTEQA
>NZ_CP040067.1|WP_000189314.1|644399_644702_-|DNA-damage-response-exodeoxyribonuclease-YhbQ
MTPWFLYLIRTADNKLYTGITTDVERRYQQHQSGKGAKALRGKGELTLAFSAPVGDRSLALRAEYRVKQLTKRQKERLVAEGAGFAELLSSLQTPEIKSD
>NZ_CP040067.1|WP_000908554.1|643909_644413_+|N-acetyltransferase
MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGLVATDDEGQVIGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNEFGYAAVVTLGDPALYSRFGFELAAHHDLRCRWPGTESAFQVHRLADDALNGVTGLVEYHEHFNRF
>NZ_CP040067.1|WP_001375267.1|643391_643916_+|SCP2-domain-containing-protein
MLDKLRSRIVHLGPSLLSVPVKLTPFALKRQVLEQVLSWQFRQALDDGELEFLEGRWLSIHVRDIDLQWFTSVVNGKLVVSQNAQADVSFSADASDLLMIAARKQDPDTLFFQRRLVIEGDTELGLYVKNLMDAIELEQMPKALRMMLLQLADFVEAGMKNAPETKQTSVGEPC
>NZ_CP040067.1|WP_000421305.1|642187_643183_-|U32-family-peptidase
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAINFYHRHFDVARVVLPRVLSIHQVKQLARVTPVPLEVFAFGSLCIMSEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNEVLIDRYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCKADPQNFVPQSAWMETLGSMSEGTQTTLGAYHRKWQ
>NZ_CP040067.1|WP_001301318.1|641300_642179_-|U32-family-peptidase
MKYSLGPVLWYWPKETLEEFYQQAATSSADVIYLGEAVCSKRRATKVGDWLEMAKSLAGSGKQIVLSTLALVQASSELGELKRYVENGEFLIEASDLGVVNMCAERKLPFVAGHALNCYNAVTLKILLKQGMMRWCMPVELSRDWLVNLLNQCDELGIRNQFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRNVLSQENQQVFVLNGIQTMSGYVYNLGNELASMQGLVDVVRLSPQGTDTFAMLDAFRANENGAAPLPLTANSDCNGYWRRLAGLELQA
>NZ_CP040067.1|WP_000130392.1|640087_641095_-|LLM-class-flavin-dependent-oxidoreductase
MTDKTIAFSLLDLAPIPEGSSAREAFSHSLDLARLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQRTMMALRRHMSGDIDNFPRDVAELVDWFDARDPNPNVRPVPGYGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRSNFKPSARLEKPYAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIQNMDQFWSPSEQYGVQQALSMSLVGDKAKVRHGLQSILRETDADEIMVNGQIFDHQARLHSFELAMDVKEELLG
>NZ_CP040067.1|WP_000646033.1|647774_648350_-|divisome-associated-lipoprotein-YraP
MKALSPIAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQVDDGTLEVRVNSALSKDEQIKKEARINVTAYQGKVLLVGQSPNAELSARAKQIAMGVDGANEVYNEIRQGQPIGLGEASNDTWITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMGLVTEREAKAAADIASRVSGVKRVTTAFTFIK
>NZ_CP040067.1|WP_001158034.1|648359_648950_-|DnaA-initiator-associating-protein-DiaA
MQERIKACFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHRSARIQEMHMLTVNCLCDLIDNTLFPHQDD
>NZ_CP040067.1|WP_000246837.1|648969_649365_-|YraN-family-protein
MATVPTRSGSPRQLTTKQTGDAWEAQARRWLEGKGLRFIAANVNERGGEIDLIMREGRTTVFVEVRYRRSALYGGAAASVTRSKQHKLLQTARLWLARHNGSFDTVDCRFDVVAFTGNEVEWIKDAFNDHS
>NZ_CP040067.1|WP_000249160.1|649322_651359_-|penicillin-binding-protein-activator
MVPSTFSRLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQADSAFYLQQMQQSSDDTRINWQLLAIRALVKEGKTGQAVELFNQLPQELNDSQRREKTLLAVEIKLAQKDFAGAQNLLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIAQEPLLGAKEKQQNIDATWQALSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDPDMMKAGIADWQKRYPNNPGAKMLPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAAPAADVAEQPQPQTVDGVASPAQASVSDLTGEQPAAQPVPVSAPATSTAAVSAPANPSAELKIYDTSSQPLSQILSQVQQDGASIVVGPLLKNNVEELLKSNTPLNVLALNQPENIENRVNICYFALSPEDEARDAARHIRDQGKQAPLVLIPRSSLGDRVANAFAQEWQKLGGGTVLQQKFGSTSELRAGVNGGSGIALTGSPITPRATTDSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYIVATPGEIAFIKPMIAMRNGSQSGATLYASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLARMYAMGVDAWSLANHFSQMRQVQGFEINGNTGSLTANPDCVINRKLSWLQYQQGQVVPAS
>NZ_CP040067.1|WP_000809262.1|651423_652284_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MKQHQSADNSQGQLYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRHTGLLLQHFGINARLFALHDHNEQQKAETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKAIEAEPRTLIFYESTHRLLDSLEDIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWVKEDENRRKGEMVLIVEGHKAQEEDLPADALRTLALLQAELPLKKAAALAAEIHGVKKNALYKYALEQQG
>NZ_CP040067.1|WP_000816988.1|652326_653418_-|fimbrial-protein
MKRAPLITGLLLISTSCAYASSGGCGADSTSGATNYSSVVDDVTVNQTDNVTGREFTSATLSSTNWQYACSCSAGKAVKLVYMVSPVLTTTGHQAGYYKLNDSLDIKTTLKANDIPGLVTDQTVSVNTRFTQIKSNTVYSAATQTGVCQGDTSRYGPVNIGANTTFTLYVTKPFLGSMTIPKTDIAVIKGAWVDGMGSPSTGDFHDLVKLSIQGNLTAPQSCKINQGDVIKVNFGFINGQKFTTRNAMPDGFTPVDFDITYDCGDTSKIKNSLQMRIDGTTGVVDQYNLVARRRSSDNAPDVGIRIENLGGGVANIPFQNGILPVDPSGHGTVNMRAWPVNLVGGELETGKFQGTATITVIVR
>NZ_CP040067.1|WP_024167269.1|653428_655801_-|fimbrial-biogenesis-outer-membrane-usher-protein
MLETTKSGMQTTDLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDEIPALAEKDDDSVINSLEQIIPGTAAEFDFNHQRLNLSIPQIALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQTSSWNTISSYLQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSSAIVTIRQNGYVIYQSNVPAGAFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPGHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNTFTLYSGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNTNIAVSYYRYTNDGYFSFDEANTRNWDYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNEKNRNISVGVSGQQWGIGYSLNYQYSRYTDQNNDRALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMRLDGSLLDDGRLSYSLEQSLDDDNNHNSSVNASYRSPYGTFSAGYSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLTTYQENRLSVDTTQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDETGQQSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGTAQCH
>NZ_CP040067.1|WP_000044770.1|656751_657447_-|molecular-chaperone
MSKRTFAVIITLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDNIDGTSRAPFIITPPLFRLEAGDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSDNVNANELTLVFKTRIKMFYRPAHLKGRVNDAWKSLEFKRSDHSLNIYNPTEYYVVFAGLAVDKTDLTSKIEYIAPGEHKQLPLPASGGKNVKWAAINDYGGSSGTETRPLQ
>NZ_CP040067.1|WP_001045434.1|657526_658111_-|type-1-fimbrial-protein
MNKVTKTAIAGLLALFAGNAAATDGEIVFDGEILKSACEINDSDKKIEVALGHYNAEQFRSVGDRSPKIPFTIPLVNCPVTGWEHDNGNVEASFRLWLETRDNGTVPNFPNLAKVGSFAGTAATGVGIRIDDAESGNLMPLNAMGNDNTVYQIPADSAGIVNVDLIAYYVSTVEASEITPGEADAVVNVTLDYR
>NZ_CP040067.1|WP_001323952.1|658511_659267_-|galactosamine-6-phosphate-isomerase
MERGTASGGASLLKEFHPVQTLQQVENYTALSERASEYLLAVIRSKPDAVICLATGATPLLTYHYLVEKIHQQQVDVSQLTFVKLDEWVDLPLTMPGTCETFLQQHIVQPLGLREDQLISFRSEEINETECERVTNLIARKGGLDLCVLGLGKNGHLGLNEPGESLQPACHISQLDARTQQHEMLKTAGRPVTRGITLGLKDILNAREVLLLVTGEGKQDATERFLTAKVSTAIPASFLWLHSNFICLINT

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Crispr_ID: NZ_CP040067_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040067_2

693299-693416

Orphan

Consensus_repeat	Method
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040067_2

>merge|NZ_CP040067|2|693299-693416|CRISPRCasFinder
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGGGTGCTCAACTTGTTGATGTTGTTGTGTTTTGTACCTGATGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGG

>NZ_CP040067|2|2|693299-693416|CRISPRCasFinder
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	GTGCTCAACTTGTTGATGTTGTTGTGTTTTGTACCTGA
TGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040067.1\|WP_000785722.1\|698608_699013_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227681
NZ_CP040067.1\|WP_000531204.1\|696685_697672_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223512
NZ_CP040067.1\|WP_000861734.1\|686200_688495_+\|2-ketobutyrate-formate-lyase/pyruvate-formate-lyase	unknown	unknown	gnl\|CDD\|153087
NZ_CP040067.1\|WP_000145820.1\|680243_680588_-\|DNA-binding-transcriptional-activator-TdcR	unknown	unknown	gnl\|CDD\|236909
NZ_CP040067.1\|WP_001375219.1\|688508_688898_+\|enamine/imine-deaminase	unknown	unknown	gnl\|CDD\|105214
NZ_CP040067.1\|WP_000104211.1\|680776_681715_+\|transcriptional-regulator-TdcA	unknown	unknown	gnl\|CDD\|182391
NZ_CP040067.1\|WP_000096086.1\|698319_698619_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372871
NZ_CP040067.1\|WP_000633577.1\|693676_694378_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP040067.1\|WP_001295544.1\|693489_693654_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040067.1\|WP_000603618.1\|697741_698224_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP040067.1\|WP_000401598.1\|690608_691940_+\|HAAAP-family-serine/threonine-permease	unknown	unknown	gnl\|CDD\|273283
NZ_CP040067.1\|WP_001198780.1\|695429_695786_-\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|225694
NZ_CP040067.1\|WP_000460519.1\|691967_693278_+\|serine-dehydratase-subunit-alpha-family-protein	unknown	unknown	gnl\|CDD\|226206
NZ_CP040067.1\|WP_139972894.1\|682824_683913_+\|threonine/serine-transporter-TdcC	unknown	unknown	gnl\|CDD\|184191
NZ_CP040067.1\|WP_000031415.1\|699015_699321_-\|DUF883-domain-containing-protein	unknown	unknown	gnl\|CDD\|226941
NZ_CP040067.1\|WP_001041010.1\|694482_695379_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176122
NZ_CP040067.1\|WP_000622115.1\|688969_690334_+\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|185000
NZ_CP040067.1\|WP_000384145.1\|696027_696393_-\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|225694
NZ_CP040067.1\|WP_000548347.1\|681813_682803_+\|bifunctional-threonine-ammonia-lyase/L-serine-ammonia-lyase-TdcB	unknown	unknown	gnl\|CDD\|236317
NZ_CP040067.1\|WP_001297162.1\|684958_686167_+\|propionate-kinase	unknown	unknown	gnl\|CDD\|183484

Protein	Function_ID	Function_description	E-value
NZ_CP040067.1\|WP_000785722.1\|698608_699013_-\|hypothetical-protein	gnl\|CDD\|227681	COG5393, COG5393, Predicted membrane protein [Function unknown].	2.73939e-60
NZ_CP040067.1\|WP_000531204.1\|696685_697672_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|223512	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP040067.1\|WP_000861734.1\|686200_688495_+\|2-ketobutyrate-formate-lyase/pyruvate-formate-lyase	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
NZ_CP040067.1\|WP_000145820.1\|680243_680588_-\|DNA-binding-transcriptional-activator-TdcR	gnl\|CDD\|236909	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional.	3.36123e-66
NZ_CP040067.1\|WP_001375219.1\|688508_688898_+\|enamine/imine-deaminase	gnl\|CDD\|105214	PRK11401, PRK11401, enamine/imine deaminase.	1.34001e-81
NZ_CP040067.1\|WP_000104211.1\|680776_681715_+\|transcriptional-regulator-TdcA	gnl\|CDD\|182391	PRK10341, PRK10341, transcriptional regulator TdcA.	0
NZ_CP040067.1\|WP_000096086.1\|698319_698619_-\|hypothetical-protein	gnl\|CDD\|372871	pfam13997, YqjK, YqjK-like protein. The YqjK-like protein family includes the E. coli YqjK protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 100 amino acids in length. There is a single completely conserved residue R that may be functionally important.	6.11451e-20
NZ_CP040067.1\|WP_000633577.1\|693676_694378_-\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.02982e-67
NZ_CP040067.1\|WP_000603618.1\|697741_698224_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	1.8476e-29
NZ_CP040067.1\|WP_000401598.1\|690608_691940_+\|HAAAP-family-serine/threonine-permease	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	2.53913e-167
NZ_CP040067.1\|WP_001198780.1\|695429_695786_-\|DUF805-domain-containing-protein	gnl\|CDD\|225694	COG3152, COG3152, Predicted membrane protein [Function unknown].	1.64644e-35
NZ_CP040067.1\|WP_000460519.1\|691967_693278_+\|serine-dehydratase-subunit-alpha-family-protein	gnl\|CDD\|226206	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism].	0
NZ_CP040067.1\|WP_139972894.1\|682824_683913_+\|threonine/serine-transporter-TdcC	gnl\|CDD\|184191	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional.	0
NZ_CP040067.1\|WP_000031415.1\|699015_699321_-\|DUF883-domain-containing-protein	gnl\|CDD\|226941	COG4575, ElaB, Uncharacterized conserved protein [Function unknown].	1.46625e-41
NZ_CP040067.1\|WP_001041010.1\|694482_695379_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176122	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.2986e-51
NZ_CP040067.1\|WP_000622115.1\|688969_690334_+\|L-serine-ammonia-lyase	gnl\|CDD\|185000	PRK15040, PRK15040, L-serine ammonia-lyase.	0
NZ_CP040067.1\|WP_000384145.1\|696027_696393_-\|DUF805-domain-containing-protein	gnl\|CDD\|225694	COG3152, COG3152, Predicted membrane protein [Function unknown].	3.68376e-42
NZ_CP040067.1\|WP_000548347.1\|681813_682803_+\|bifunctional-threonine-ammonia-lyase/L-serine-ammonia-lyase-TdcB	gnl\|CDD\|236317	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB.	0
NZ_CP040067.1\|WP_001297162.1\|684958_686167_+\|propionate-kinase	gnl\|CDD\|183484	PRK12379, PRK12379, propionate kinase.	0

>NZ_CP040067.1|WP_000460519.1|691967_693278_+|serine-dehydratase-subunit-alpha-family-protein
MFDSTLNPLWQRYILAVQEEVKPALGCTEPISLALAAAVAAAELEGPVERVEAWVSPNLMKNGLGVTVPGTGMVGLPIAAALGALGGNANAGLEVLKDATAQAIADAKALLAAGKVSVKIQEPCNEILFSRAKVWNGEKWACVTIVGGHTNIVHIETHNGVVFTQQACVAEGEQESPLTVLSRTTLAEILKFVNEVPFAAIRFILDSAKLNCALSQEGLSGKWGLHIGATLEKQCERGLLAKDLSSSIVIRTSAASDARMGGATLPAMSNSGSGNQGITATMPVVVVAEHFGADDERLARALMLSHLSAIYIHNQLPRLSALCAATTAAMGAAAGMAWLVDGRYETISMAISSMIGDVSGMICDGASNSCAMKVSTSASAAWKAVLMALDDTAVTGNEGIVAHDVEQSIANLCALASHSMQQTDRQIIEIMASKAR
>NZ_CP040067.1|WP_000401598.1|690608_691940_+|HAAAP-family-serine/threonine-permease
MEIASNKGVIADASTPAGRAGMSESEWREAIKFDSTDTGWVIMSIGMAIGAGIVFLPVQVGLMGLWVFLLSSVIGYPAMYLFQRLFINTLAESPECKDYPSVISGYLGKNWGILLGALYFVMLVIWMFVYSTAITNDSASYLHTFGVTEGLLSDSPFYGLVLICILVAISSRGEKLLFKISTGMVLTKLLVVAALGVSMVGMWHLYNVGSLPPLGLLVKNAIITLPFTLTSILFIQTLSPMVISYRSREKSIEVARHKALRAMNIAFGILFVTVFFYAVSFTLAMGHDEAVKAYEQNISALAIAAQFISGDGAAWVKVVSVILNIFAVMTAFFGVYLGFREATQGIVMNILRRKMPAEKINENLVQRGIMIFAILLAWSAIVLNAPVLSFTSICSPIFGMVGCLIPAWLVYKVPALHKYKGMSLYLIIVTGLLLCVSPFLAFS
>NZ_CP040067.1|WP_000622115.1|688969_690334_+|L-serine-ammonia-lyase
MISAFDIFKIGIGPSSSHTVGPMNAGKSFIDRLESSGLLTATSHIVVDLYGSLSLTGKGHATDVAIIMGLAGNSPQDVVIDEIPAFIELVTRSGRLPVASGAHIVDFPVAKNIIFHPEMLPRHENGMRITAWKGQEALLSKTYYSVGGGFIVEEEHFGLSHDVETSVPYDFHSAGELLKMCDYNGLSISGLMMHNELALRSKAEIDAGFARIWQVMHDGIERGMNTEGVLPGPLNVPRRAVALRRQLVSSDNISNDPMNVIDWINMYALAVSEENAAGGRVVTAPTNGACGIIPAVLAYYDKFRRPVNERSIARYFLAAGAIGALYKMNASISGAEVGCQGEIGVACSMAAAGLTELLGGSPAQVCNAAEIAMEHNLGLTCDPVAGQVQIPCIERNAINAVKAVNAARMAMRRTSAPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIKVVCG
>NZ_CP040067.1|WP_001375219.1|688508_688898_+|enamine/imine-deaminase
MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPADVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSYVQVARLPKDVKLEIEAIAVRSA
>NZ_CP040067.1|WP_000861734.1|686200_688495_+|2-ketobutyrate-formate-lyase/pyruvate-formate-lyase
MKVDIDTSDKLYADAWLGFKGTDWKNEINVRDFIQHNYTPYEGDESFLAEATPATTELWEKVMEGIRIENATHAPVDFDTNIATTITAHDAGYINQPLEKIVGLQTDAPLKRALHPFGGINMIKSSFHAYGREMDSEFEYLFTDLRKTHNQGVFDVYSPDMLRCRKSGVLTGLPDGYGRGRIIGDYRRVALYGISYLVRERELQFADLQSRLEKGEDLEATIRLREELAEHRHALLQIQEMAAKYGFDISRPAQNAQEAVQWLYFAYLAAVKSQNGGAMSLGRTASFLDIYIERDFKAGVLNEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSGDPIWATEVIGGMGLDGRTLVTKNSFRYLHTLHTMGPAPEPNLTILWSEELPIAFKKYAAQVSIVTSSLQYENDDLMRTDFNSDDYAIACCVSPMVIGKQMQFFGARANLAKTLLYAINGGVDEKLKIQVGPKTAPLMDDVLDYDKVMDSLDHFMDWLAVQYISALNIIHYMHDKYSYEASLMALHDRDVYRTMACGIAGLSVATDSLSAIKYARVKPIRDENGLAVDFEIDGEYPQYGNNDERVDSIACDLVERFMKKIKALPTYRNAVPTQSILTITSNVVYGQKTGNTPDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTFSIVPAALGKEDPVRKTNLVGLLDGYFHHEADVEGGQHLNVNVMNREMLLDAIEHPEKYPNLTIRVSGYAVRFNALTREQQQDVISRTFTQAL
>NZ_CP040067.1|WP_001297162.1|684958_686167_+|propionate-kinase
MNEFPVVLVINCGSSSIKFSVLDASDCEVLMSGIADGINSENAFLSVNGGEPAPLAHHSYEGALKAIAFELEKRNLNDSVALIGHRIAHGGSIFTESAIITDEVIDNIRRVSPLAPLHNYANLSGIESAQQLFPGVTQVAVFDTSFHQTMAPEAYLYGLPWKYYEELGVRRYGFHGTSHRYVSQRAHSLLNLAEDDSGLVVAHLGNGASICAVRNGQSVDTSMGMTPLEGLMMGTRSGDVDFGAMSWVASQTNQSLGDLERVVNKESGLLGISGLSSDLRVLEKAWHEGHERAQLAIKTFVHRIARHIAGHAASLRRLDGIIFTGGIGENSSLIRRLVMEHLAVLGVEIDTEMNNRSNSCGERIVSSENARVICAVIPTNEEKMIALDAIHLGKVNAPAEFA
>NZ_CP040067.1|WP_139972894.1|682824_683913_+|threonine/serine-transporter-TdcC
MSTSDSIVSSQTKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILITVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPANMAEAKAQNIPVLSYLANHFASMTGTKTTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGR
>NZ_CP040067.1|WP_000548347.1|681813_682803_+|bifunctional-threonine-ammonia-lyase/L-serine-ammonia-lyase-TdcB
MHITYDLPVAIDDIIEAKQRLAGRIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVEMEGRIFIPPYDDPKVIAGQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAVAIKSINPTIRVIGVQSENVHGMAASFHSGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQRNKVVTEGAGALACAALLSGKLDQYIQNRKTVSIISGGNIDLSRVSQITGFVDA
>NZ_CP040067.1|WP_000104211.1|680776_681715_+|transcriptional-regulator-TdcA
MSTILLPKTQHLVVFQEVIRSGSIGSAAKELGLTQPAVSKIINDIEDYFGVELVVRKNTGVTLTPAGQLLLSRSESITREMKNMVNEISGMSSEAVVEVSFGFPSLIGFTFMSGMINKFKEVFPKAQVSMYEAQLSSFLPAIRDGRLDFAIGTLSAEMKLQDLHVEPLFESEFVLVASKSRTCTGTTTLESLKNEQWVLPQTNMGYYSELLTTLQRNGISIENIVKTDSVVTIYNLVLNADFLTVIPCDMTSPFGSNQFITIPVEETLPVAQYAAVWSKNYRIKKAASVLVELAKEYSSYNGCRRRQLIEVG
>NZ_CP040067.1|WP_000145820.1|680243_680588_-|DNA-binding-transcriptional-activator-TdcR
MTGITIFYGDNIIRYVVNIKKGLRPYFKQLPDNYQAKFELNLMSKFSNFIINKPFSAINTAARHIFSRYLLENKHLFYQYFKISNTGIDHLEQLINVNFFSSDRTSFCECNRFP
>NZ_CP040067.1|WP_001295544.1|693489_693654_-|hypothetical-protein
MSKKSAKKRQPVKPVVAKEPARTAKNFGYEEMLSELEAIVADAETRLAEDEATA
>NZ_CP040067.1|WP_000633577.1|693676_694378_-|pirin-family-protein
MITTRTARQCGQADYGWLQARYTFSFGHYFDPKLLGYASLRVLNQEVLAPGAAFQPRTYPKVDILNVILDGEAEYRDSEGNHVQASAGEALLLSTQPGVSYSEHNLSKDKPLTRMQLWLDACPQRENPLIQKLALNMGKQQLIASPEGTMGSLQLRQQVWLHHIVLDKGESANFQLHGPRAYLQSIHGKFHALTHHEEKAALTCGDGAFIRDEANITLVADSPLRALLIDLPV
>NZ_CP040067.1|WP_001041010.1|694482_695379_+|LysR-family-transcriptional-regulator
MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTIVTEALVPTPAFFPLIDKLAAKANTQLAIITEVLAGAWERLEQGRADIVIAPDMHFRSSSEINSRKLYTLMNVYVAAPDHPIHQEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLGVATMPYPMVEKDIAEGRLRVVSPESTSEIDIIMAWRRDSMGEAKSWCLREIPKLFSGK
>NZ_CP040067.1|WP_001198780.1|695429_695786_-|DUF805-domain-containing-protein
MQWYLAVLKNYVGFSGRARRKEYWMFTLINAIVGAIINVIQLILGLEFPFLSLIYLAATIIPVIALCVRRLHDTDRSGAWALLYLVPIIGWLVLFVFACLEGNSGSNRYGNDPKFGSN
>NZ_CP040067.1|WP_000384145.1|696027_696393_-|DUF805-domain-containing-protein
MDWYLKVLKNYVGFRGRARRKEYWMFILVNIIFTFVLGLLDKMLGWQRAGGEGILTTIYGILVFLPWWAVQFRRLHDTDRSAWWALLFLIPFIGWLIIIVFNCQAGTPGENRFGPDPKLEP
>NZ_CP040067.1|WP_000531204.1|696685_697672_-|glutathione-S-transferase-family-protein
MGQLIDGVWHDTWYDTKSTGGKFQRSASAFRNWLTADGAPGPTGTGGFIAEKDRYHLYVSLACPWAHRTLIMRKLKGLEPFISVSVVNPLMLENGWTFDDSFPGATGDTLYQHEFLYQLYLHADPHYSGRVTVPVLWDKKNHTIVSNESAEIIRMFNTAFDALGAKAGDYYPPALQTKIDELNGWIYDTVNNGVYKAGFATSQQAYDEAVAKVFESLARLEQILGQHRYLTGNQLTEADIRLWTTLVRFDPVYVTHFKCDKHRISNYLNLYGFLRDIYQMPGIAETVNFDHIRNHYFRSHKTINPTGIISIGPWQDLDEPHGRDVRFG
>NZ_CP040067.1|WP_000603618.1|697741_698224_-|DoxX-family-protein
MILSIDSNDANTAPLHKKTISSLSGAVESMMKKLEDVGVLVARILMPILFITAGWGKITGYAGTQQYMEAMGVPGFMLPLVILLEFGGGLAILFGFLTRTTALFTAGFTLLTAFLFHSNFAEGVNSLMFMKNLTISGGFLLLAITGPGAYSIDRLLNKKW
>NZ_CP040067.1|WP_000096086.1|698319_698619_-|hypothetical-protein
MSSKVERERRKAQLLSQIQQQRLDLSASRREWLEATGAYDRRWNMLLSLRSWALVGSSVMAIWTIRHPNMLVRWARRGFGVWSAWRLVKTTLKQQQLRG
>NZ_CP040067.1|WP_000785722.1|698608_699013_-|hypothetical-protein
MADTHHAQGPGKSVLGIGQRIVSIMVEMVETRLRLAVVELEEEKANLFQLLLMLGLTMLFAAFGLMSLMVLIIWAVDPQYRLNAMIATTVVLLLLALIGGIWTLRKSRKSTLLRHTRHELANDRQLLEEESREQ
>NZ_CP040067.1|WP_000031415.1|699015_699321_-|DUF883-domain-containing-protein
MSKEHTTEHLRAELKSLSDTLEEVLSSSGEKSKEELSKIRSKAEQALKQSRYRLGETGDAIAKQTRVAAARADEYVRENPWTGVGIGAAIGVVLGVLLSRR

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Crispr_ID: NZ_CP040067_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040067_3

1136007-1136523

Orphan

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

8 spacers

The CRISPR arrays of NZ_CP040067_3

>merge|NZ_CP040067|3|1136007-1136523|PILER-CR,CRISPRCasFinder,CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCGTCCACGCTGTAACGGCCATCATTAAGTTTAGTGAGTTCCCCGCGCCAGCGGGGATAAACCGGCTGATGGTCTGGGAGTGTCCATCGGGCAACTGAGTTCCCCGCGCCAGCGGGGATAAACCGGAAGTAGGCCTGACAGTGATTGAACGCATACTGAGTTCCCCGCGCCAGCGGGGATAAACCGAGTTGGGGCGGCGCAATAACGAGACGATACGCGAGTTCCCCGCGCCAGCGGGGATAAACCGGGGAGTGGCACTTCTGGGGTAGCGGCGGCCCTGAGTTCCCCGCGCCAGCGGGGATAAACCGTCAACGCGCTCAGACGTTGCGTGAGTGAACCAGAGTTCCCCGCGCCAGCGGGGATAAACCGAAATATCCAGGGCTGGGCTGGAGGCAGACGGCGAGTTCCCCGCGCCAGCGGGGATAAACCGCCCGGAATGCATTCTGAAGGTTTGCTGTATATGAGTTCCCCGCGCCAGCGGGGATAAACCA

>NZ_CP040067|3|1|1136007-1136523|PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCCACGCTGTAACGGCCATCATTAAGTTTAGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGATGGTCTGGGAGTGTCCATCGGGCAACT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GAAGTAGGCCTGACAGTGATTGAACGCATACT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTGGGGCGGCGCAATAACGAGACGATACGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCAACGCGCTCAGACGTTGCGTGAGTGAACCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AAATATCCAGGGCTGGGCTGGAGGCAGACGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCCGGAATGCATTCTGAAGGTTTGCTGTATAT
GAGTTCCCCGCGCCAGCGGGGATAAACCA

>NZ_CP040067|3|3|1136007-1136523|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCCACGCTGTAACGGCCATCATTAAGTTTAGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGATGGTCTGGGAGTGTCCATCGGGCAACT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GAAGTAGGCCTGACAGTGATTGAACGCATACT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTGGGGCGGCGCAATAACGAGACGATACGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCAACGCGCTCAGACGTTGCGTGAGTGAACCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AAATATCCAGGGCTGGGCTGGAGGCAGACGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCCGGAATGCATTCTGAAGGTTTGCTGTATAT
GAGTTCCCCGCGCCAGCGGGGATAAACCA

>NZ_CP040067|3|1|1136007-1136523|CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCCACGCTGTAACGGCCATCATTAAGTTTAGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGATGGTCTGGGAGTGTCCATCGGGCAACT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GAAGTAGGCCTGACAGTGATTGAACGCATACT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTGGGGCGGCGCAATAACGAGACGATACGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCAACGCGCTCAGACGTTGCGTGAGTGAACCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AAATATCCAGGGCTGGGCTGGAGGCAGACGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCCGGAATGCATTCTGAAGGTTTGCTGTATAT
GAGTTCCCCGCGCCAGCGGGGATAAACCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040067.1\|WP_000021330.1\|1140261_1141047_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP040067.1\|WP_000109532.1\|1146355_1146616_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP040067.1\|WP_000059312.1\|1141116_1142571_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP040067.1\|WP_000039683.1\|1137160_1138639_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP040067.1\|WP_001295150.1\|1146606_1147878_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP040067.1\|WP_001164578.1\|1138665_1139943_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP040067.1\|WP_001130266.1\|1145763_1146339_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP040067.1\|WP_001098105.1\|1142664_1144002_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP040067.1\|WP_000581937.1\|1129074_1129323_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP040067.1\|WP_001324446.1\|1144755_1145616_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP040067.1\|WP_000210878.1\|1130747_1132385_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP040067.1\|WP_001324445.1\|1143979_1144759_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP040067.1\|WP_000036723.1\|1132472_1133771_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP040067.1\|WP_001679366.1\|1133830_1134703_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP040067.1\|WP_000046812.1\|1125413_1126715_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP040067.1\|WP_000254738.1\|1129322_1129658_+\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP040067.1\|WP_001199979.1\|1134995_1135667_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP040067.1\|WP_001071648.1\|1129728_1130520_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP040067.1\|WP_001288227.1\|1134716_1134857_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040067.1\|WP_000226815.1\|1126762_1128997_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797

Protein	Function_ID	Function_description	E-value
NZ_CP040067.1\|WP_000021330.1\|1140261_1141047_+\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.14687e-138
NZ_CP040067.1\|WP_000109532.1\|1146355_1146616_-\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	3.6328e-41
NZ_CP040067.1\|WP_000059312.1\|1141116_1142571_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.25325e-82
NZ_CP040067.1\|WP_000039683.1\|1137160_1138639_-\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	9.76816e-108
NZ_CP040067.1\|WP_001295150.1\|1146606_1147878_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	2.82789e-125
NZ_CP040067.1\|WP_001164578.1\|1138665_1139943_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.84544e-29
NZ_CP040067.1\|WP_001130266.1\|1145763_1146339_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
NZ_CP040067.1\|WP_001098105.1\|1142664_1144002_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.74708e-50
NZ_CP040067.1\|WP_000581937.1\|1129074_1129323_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP040067.1\|WP_001324446.1\|1144755_1145616_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	1.47186e-88
NZ_CP040067.1\|WP_000210878.1\|1130747_1132385_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP040067.1\|WP_001324445.1\|1143979_1144759_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	7.46503e-62
NZ_CP040067.1\|WP_000036723.1\|1132472_1133771_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP040067.1\|WP_001679366.1\|1133830_1134703_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	4.46208e-100
NZ_CP040067.1\|WP_000046812.1\|1125413_1126715_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP040067.1\|WP_000254738.1\|1129322_1129658_+\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
NZ_CP040067.1\|WP_001199979.1\|1134995_1135667_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.23739e-155
NZ_CP040067.1\|WP_001071648.1\|1129728_1130520_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
NZ_CP040067.1\|WP_000226815.1\|1126762_1128997_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0

>NZ_CP040067.1|WP_001199979.1|1134995_1135667_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVISRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP040067.1|WP_001288227.1|1134716_1134857_-|hypothetical-protein
MSEENKENGFNHVKTFTKIIFIFSVLVFNDNESKITDAAVNLFIQI
>NZ_CP040067.1|WP_001679366.1|1133830_1134703_-|YgcG-family-protein
MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLESIFNNTQVQIAVLIVPTTKDETIEQYATRVFDNWRLGDAKRNDGILIIVAWSDRTVRIKVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAQGLELAINALNNQLTSQHQYPTNPSESESASSSDHYYFAIFWVFAVMFFPFWFFHQCSNFCRACKSGVCISAIYLLDLFLFSDKIFSIAVFSFFFTFTIFMVFTCLCVLQKRASGRSYHSDNSGSAGGSDSGGFSGGGGSSGGGGASGRW
>NZ_CP040067.1|WP_000036723.1|1132472_1133771_+|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP040067.1|WP_000210878.1|1130747_1132385_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP040067.1|WP_001071648.1|1129728_1130520_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP040067.1|WP_000254738.1|1129322_1129658_+|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP040067.1|WP_000581937.1|1129074_1129323_+|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP040067.1|WP_000226815.1|1126762_1128997_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP040067.1|WP_000046812.1|1125413_1126715_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>NZ_CP040067.1|WP_000039683.1|1137160_1138639_-|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNYFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFMPVESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNADSIQSWSNA
>NZ_CP040067.1|WP_001164578.1|1138665_1139943_-|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSTSLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSIIGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALGMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_CP040067.1|WP_000021330.1|1140261_1141047_+|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAASCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>NZ_CP040067.1|WP_000059312.1|1141116_1142571_+|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREVMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP040067.1|WP_001098105.1|1142664_1144002_+|MFS-transporter
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP040067.1|WP_001324445.1|1143979_1144759_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWRDYLRQRMQP
>NZ_CP040067.1|WP_001324446.1|1144755_1145616_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLIIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>NZ_CP040067.1|WP_001130266.1|1145763_1146339_-|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP040067.1|WP_000109532.1|1146355_1146616_-|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTAERLISACPAGLFSLTPEGDLRIDYRSCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_CP040067.1|WP_001295150.1|1146606_1147878_-|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERCITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRTWPALMQDISRDLWDQGDKPVPPLRQLFWHHLRRHGLWHLAGDVIRSLRCL

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Crispr_ID: NZ_CP040067_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040067_4

1158908-1159486

Unclear

I-E

Consensus_repeat	Method
TGTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

9 spacers

cas2,cas1,cas6e,cas5

The CRISPR arrays of NZ_CP040067_4

>merge|NZ_CP040067|4|1158908-1159486|CRISPRCasFinder,PILER-CR,CRT
TGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGCCCGCGCAATTCCGGGAGCATCCGCAATTGTGTTCCCCGCGCCAGCGGGGATAAACCGACGGACAAAATATATATTGATTTGCGAATTATGTGTTCCCCGCGCCAGCGGGGATAAACCGGTAAAGAAACTGCCGACAAATCCCTGTTCGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCGTCACCGACGCGCAGTGGCGCTACCGTGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGATCTAACGCGCTGTAAAAATTCCGTGCTTTGTGTTCCCCGCGCCAGCGGGGATAAACCATGCGGATTACCGGCAAAACATGGGAGCAAACCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGAACGGCTGGCGAAGCAGGTGGCTGGCGTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTTACCGCCCCGCAGAGGCGCTGGCAGATCCGTGTTCCCCGCGCCAGCGGGGATAAACCGGGATGACCTGTCGCTAAAACTCGCCGCGTACAGTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP040067|4|4|1158908-1159486|CRISPRCasFinder
TGTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCCCGCGCAATTCCGGGAGCATCCGCAAT
TGTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGGACAAAATATATATTGATTTGCGAATTA
TGTGTTCCCCGCGCCAGCGGGGATAAACCG	GTAAAGAAACTGCCGACAAATCCCTGTTCGT
TGTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCGTCACCGACGCGCAGTGGCGCTACCGTG
AGTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATCTAACGCGCTGTAAAAATTCCGTGCTT
TGTGTTCCCCGCGCCAGCGGGGATAAACCA	TGCGGATTACCGGCAAAACATGGGAGCAAAC
CGTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAACGGCTGGCGAAGCAGGTGGCTGGCGT
AGTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTTACCGCCCCGCAGAGGCGCTGGCAGATC
CGTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATGACCTGTCGCTAAAACTCGCCGCGTAC
AGTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP040067|4|2|1158909-1159486|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCCCGCGCAATTCCGGGAGCATCCGCAATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGGACAAAATATATATTGATTTGCGAATTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTAAAGAAACTGCCGACAAATCCCTGTTCGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCGTCACCGACGCGCAGTGGCGCTACCGTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATCTAACGCGCTGTAAAAATTCCGTGCTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCA	TGCGGATTACCGGCAAAACATGGGAGCAAACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATGACCTGTCGCTAAAACTCGCCGCGTACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP040067|4|2|1158909-1159486|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCCCGCGCAATTCCGGGAGCATCCGCAATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGGACAAAATATATATTGATTTGCGAATTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTAAAGAAACTGCCGACAAATCCCTGTTCGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCGTCACCGACGCGCAGTGGCGCTACCGTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATCTAACGCGCTGTAAAAATTCCGTGCTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCA	TGCGGATTACCGGCAAAACATGGGAGCAAACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATGACCTGTCGCTAAAACTCGCCGCGTACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040067.1\|WP_001295150.1\|1146606_1147878_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP040067.1\|WP_001090386.1\|1161766_1163194_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP040067.1\|WP_001374723.1\|1166911_1167673_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP040067.1\|WP_001374730.1\|1165405_1165885_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP040067.1\|WP_001173673.1\|1163193_1163799_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP040067.1\|WP_000246138.1\|1164695_1165406_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP040067.1\|WP_000490426.1\|1159567_1160605_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP040067.1\|WP_000085051.1\|1156223_1156970_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP040067.1\|WP_000372108.1\|1160856_1161765_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP040067.1\|WP_000517476.1\|1164365_1164677_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP040067.1\|WP_000568943.1\|1165881_1166931_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP040067.1\|WP_000211954.1\|1148636_1150436_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP040067.1\|WP_000956458.1\|1153220_1153373_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP040067.1\|WP_000063176.1\|1158518_1158812_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP040067.1\|WP_000987944.1\|1147955_1148321_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP040067.1\|WP_000039842.1\|1152221_1152956_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP040067.1\|WP_000144861.1\|1157598_1158522_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP040067.1\|WP_001290706.1\|1150435_1152148_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP040067.1\|WP_000281446.1\|1156951_1157602_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP040067.1\|WP_001246104.1\|1163848_1164172_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891

Protein	Function_ID	Function_description	E-value
NZ_CP040067.1\|WP_001295150.1\|1146606_1147878_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	2.82789e-125
NZ_CP040067.1\|WP_001090386.1\|1161766_1163194_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP040067.1\|WP_001374723.1\|1166911_1167673_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	5.52694e-150
NZ_CP040067.1\|WP_001374730.1\|1165405_1165885_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.39469e-104
NZ_CP040067.1\|WP_001173673.1\|1163193_1163799_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP040067.1\|WP_000246138.1\|1164695_1165406_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
NZ_CP040067.1\|WP_000490426.1\|1159567_1160605_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP040067.1\|WP_000085051.1\|1156223_1156970_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.83917e-49
NZ_CP040067.1\|WP_000372108.1\|1160856_1161765_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP040067.1\|WP_000517476.1\|1164365_1164677_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP040067.1\|WP_000568943.1\|1165881_1166931_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP040067.1\|WP_000211954.1\|1148636_1150436_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP040067.1\|WP_000956458.1\|1153220_1153373_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NZ_CP040067.1\|WP_000063176.1\|1158518_1158812_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.35543e-65
NZ_CP040067.1\|WP_000987944.1\|1147955_1148321_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	9.8593e-60
NZ_CP040067.1\|WP_000039842.1\|1152221_1152956_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.33579e-136
NZ_CP040067.1\|WP_000144861.1\|1157598_1158522_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	6.67486e-158
NZ_CP040067.1\|WP_001290706.1\|1150435_1152148_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP040067.1\|WP_000281446.1\|1156951_1157602_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.0289e-91
NZ_CP040067.1\|WP_001246104.1\|1163848_1164172_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52

>NZ_CP040067.1|WP_000063176.1|1158518_1158812_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>NZ_CP040067.1|WP_000144861.1|1157598_1158522_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>NZ_CP040067.1|WP_000281446.1|1156951_1157602_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESDTFTIECRSFAPELRTGQQLCFNLRANPTICKSGKRHDLLMEAKRQVRGQAEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>NZ_CP040067.1|WP_000085051.1|1156223_1156970_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTIQMPKEVRKARYFSRREELSDPDLLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNACDALCNAYQQYQDHFHKLKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTINQGPWLSKEEPCTSQE
>NZ_CP040067.1|WP_000956458.1|1153220_1153373_+|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP040067.1|WP_000039842.1|1152221_1152956_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMLEEETRFFGLKRECGLHEG
>NZ_CP040067.1|WP_001290706.1|1150435_1152148_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
>NZ_CP040067.1|WP_000211954.1|1148636_1150436_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTQVPPSALLPLNPEQLVRLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAATPAPAAEMPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKDGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY
>NZ_CP040067.1|WP_000987944.1|1147955_1148321_-|6-carboxytetrahydropterin-synthase-QueD
MMSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>NZ_CP040067.1|WP_001295150.1|1146606_1147878_-|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERCITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRTWPALMQDISRDLWDQGDKPVPPLRQLFWHHLRRHGLWHLAGDVIRSLRCL
>NZ_CP040067.1|WP_000490426.1|1159567_1160605_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP040067.1|WP_000372108.1|1160856_1161765_+|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP040067.1|WP_001090386.1|1161766_1163194_+|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEKTFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMAWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP040067.1|WP_001173673.1|1163193_1163799_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP040067.1|WP_001246104.1|1163848_1164172_+|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP040067.1|WP_000517476.1|1164365_1164677_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP040067.1|WP_000246138.1|1164695_1165406_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP040067.1|WP_001374730.1|1165405_1165885_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYERGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP040067.1|WP_000568943.1|1165881_1166931_+|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP040067.1|WP_001374723.1|1166911_1167673_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVICSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Crispr_ID: NZ_CP040067_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040067_5

1661586-1661703

Orphan

Consensus_repeat	Method
CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040067_5

>merge|NZ_CP040067|5|1661586-1661703|CRISPRCasFinder
CCGAGCCGTAGGCCGGATAAGGCGTTCACGCTGCATCCGGCACCCGGAGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAACCGAGCCGTAGGCCGGATAAGGCGTTTACGC

>NZ_CP040067|5|5|1661586-1661703|CRISPRCasFinder
CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	TGCATCCGGCACCCGGAGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAA
CCGAGCCGTAGGCCGGATAAGGCGTTTACGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040067.1\|WP_001075164.1\|1661722_1664008_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181649
NZ_CP040067.1\|WP_001295211.1\|1673913_1674537_+\|DUF1175-domain-containing-protein	unknown	unknown	gnl\|CDD\|225774
NZ_CP040067.1\|WP_001104488.1\|1679075_1680725_+\|DUF2300-domain-containing-protein	unknown	unknown	gnl\|CDD\|227732
NZ_CP040067.1\|WP_000948732.1\|1654008_1655367_+\|glycerol-3-phosphate-transporter	unknown	unknown	gnl\|CDD\|236889
NZ_CP040067.1\|WP_001220074.1\|1664703_1668456_+\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	unknown	unknown	gnl\|CDD\|182059
NZ_CP040067.1\|WP_122633159.1\|1674680_1679075_+\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
NZ_CP040067.1\|WP_000786548.1\|1681579_1682764_-\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|180261
NZ_CP040067.1\|WP_000301049.1\|1659400_1660051_+\|lipopolysaccharide-kinase-InaA	unknown	unknown	gnl\|CDD\|182136
NZ_CP040067.1\|WP_000857251.1\|1652107_1653736_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|236847
NZ_CP040067.1\|WP_000768974.1\|1655371_1656448_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
NZ_CP040067.1\|WP_000332037.1\|1660358_1661489_-\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|181647
NZ_CP040067.1\|WP_072163405.1\|1656666_1656981_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040067.1\|WP_001000370.1\|1649671_1650862_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	unknown	unknown	gnl\|CDD\|132422
NZ_CP040067.1\|WP_001209908.1\|1650858_1652118_-\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	unknown	unknown	gnl\|CDD\|225617
NZ_CP040067.1\|WP_000012305.1\|1672228_1673917_+\|DUF2138-domain-containing-protein	unknown	unknown	gnl\|CDD\|227030
NZ_CP040067.1\|WP_001567753.1\|1680729_1681506_+\|YfaP-family-protein	unknown	unknown	gnl\|CDD\|227021
NZ_CP040067.1\|WP_001281225.1\|1669452_1672080_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	unknown	unknown	gnl\|CDD\|235502
NZ_CP040067.1\|WP_000135040.1\|1660104_1660359_-\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	unknown	unknown	gnl\|CDD\|182668
NZ_CP040067.1\|WP_001374259.1\|1648579_1649479_-\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|182167
NZ_CP040067.1\|WP_000990756.1\|1668583_1669306_-\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	unknown	unknown	gnl\|CDD\|235350

Protein	Function_ID	Function_description	E-value
NZ_CP040067.1\|WP_001075164.1\|1661722_1664008_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
NZ_CP040067.1\|WP_001295211.1\|1673913_1674537_+\|DUF1175-domain-containing-protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	7.99004e-141
NZ_CP040067.1\|WP_001104488.1\|1679075_1680725_+\|DUF2300-domain-containing-protein	gnl\|CDD\|227732	COG5445, COG5445, Predicted secreted protein [Function unknown].	2.06112e-125
NZ_CP040067.1\|WP_000948732.1\|1654008_1655367_+\|glycerol-3-phosphate-transporter	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	0
NZ_CP040067.1\|WP_001220074.1\|1664703_1668456_+\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
NZ_CP040067.1\|WP_122633159.1\|1674680_1679075_+\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NZ_CP040067.1\|WP_000786548.1\|1681579_1682764_-\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
NZ_CP040067.1\|WP_000301049.1\|1659400_1660051_+\|lipopolysaccharide-kinase-InaA	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	1.43283e-158
NZ_CP040067.1\|WP_000857251.1\|1652107_1653736_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
NZ_CP040067.1\|WP_000768974.1\|1655371_1656448_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
NZ_CP040067.1\|WP_000332037.1\|1660358_1661489_-\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
NZ_CP040067.1\|WP_001000370.1\|1649671_1650862_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	gnl\|CDD\|132422	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species. [Energy metabolism, Anaerobic].	0
NZ_CP040067.1\|WP_001209908.1\|1650858_1652118_-\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	gnl\|CDD\|225617	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism].	0
NZ_CP040067.1\|WP_000012305.1\|1672228_1673917_+\|DUF2138-domain-containing-protein	gnl\|CDD\|227030	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP040067.1\|WP_001567753.1\|1680729_1681506_+\|YfaP-family-protein	gnl\|CDD\|227021	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown].	1.0163e-152
NZ_CP040067.1\|WP_001281225.1\|1669452_1672080_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NZ_CP040067.1\|WP_000135040.1\|1660104_1660359_-\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	2.72138e-53
NZ_CP040067.1\|WP_001374259.1\|1648579_1649479_-\|ISNCY-family-transposase	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	0
NZ_CP040067.1\|WP_000990756.1\|1668583_1669306_-\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	9.80223e-171

>NZ_CP040067.1|WP_000332037.1|1660358_1661489_-|ribonucleotide-diphosphate-reductase-subunit-beta
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL
>NZ_CP040067.1|WP_000135040.1|1660104_1660359_-|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM
>NZ_CP040067.1|WP_000301049.1|1659400_1660051_+|lipopolysaccharide-kinase-InaA
MAVSAKYDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSINRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>NZ_CP040067.1|WP_072163405.1|1656666_1656981_-|hypothetical-protein
MTNKLGGELIDIADKKLAPLINDSFSYTRDFFAYSKQENNIFTFDNSKFVDPKEKEGLMIQHSNGQLVITGKYCPEGVQTAFTQEQYDKLIRYINIFFTFPKCE
>NZ_CP040067.1|WP_000768974.1|1655371_1656448_+|glycerophosphodiester-phosphodiesterase
MKLKLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMDLNLVQLIAYTDWNETQQKQPDGSWVNYSYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTTDVNQLYDVLYNKAGVNGLFTDFPDKAVKFLNKE
>NZ_CP040067.1|WP_000948732.1|1654008_1655367_+|glycerol-3-phosphate-transporter
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQKRNGG
>NZ_CP040067.1|WP_000857251.1|1652107_1653736_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQDPAEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL
>NZ_CP040067.1|WP_001209908.1|1650858_1652118_-|glycerol-3-phosphate-dehydrogenase-subunit-GlpB
MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVADIHSGLESLRQQAPAHPYSLLGPQRVLDLACQAQALIAESGAQLQGSVELAHQRITPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELDLSVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERNGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDETLRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ
>NZ_CP040067.1|WP_001000370.1|1649671_1650862_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C
MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLKDGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMGSVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSVAAQQAQYKDQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTAKARKQAITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWRKLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRKIPGLELTVLDSQCCGIAGTYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLAQALA
>NZ_CP040067.1|WP_001374259.1|1648579_1649479_-|ISNCY-family-transposase
MTESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAYYSDVLWSVETSDGDGYIYCVIEHQSSAEKNMAFRLMRYATAAMQRHLDKGYDRVPLVVPLLFYHGETSPYPYSLNWLDEFDDPQLARQLYTEAFPLVDITIVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVKGFTNDSQLQTLFNYLLQCGDTSRFTRFIEEIAKRSPLQKERLMTIAERLRQEGHQIGWQEGMHEQAIKIALRMLEQGFEREIVLATTQLTDADIPNCH
>NZ_CP040067.1|WP_001075164.1|1661722_1664008_-|ribonucleoside-diphosphate-reductase-subunit-alpha
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>NZ_CP040067.1|WP_001220074.1|1664703_1668456_+|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC
MRIIFLRKEYLSLLPSMIASLFSANGVAAVTDSCQGYDVKASCQASRQSLSGITQDWSIADGQWLVFSDMTNNASGGAVFLQQGAEFSLLPENETGMTLFANNTVTGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTINNDVYLSDVIFDNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIVNNTAFTNNTAEGYGGAIYTNSVTAPYLIDISVDDSYSQNGGVLVDENNSAAGYGDGPSSAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVDSIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDQYQNQAELNVGSTQQTFVHALTGFQNGTLNIDAGGNVTVNQGSFAGIIEGAGQLTIAQNGSYVLAGAQSMALTGDIVVDDGAVLSLEGDAADLTALQDDPQSIVLNGGVLDLSDFSTWQSGTSYNDGLEVSGSSGTVIGSQDVVDLAGGDNLHIGGDGKDGVYVVVDASDGQVSLANNNSYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDKQQESVMEITSDVDTRSDAAGHGRDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLKGDVADILPYASSLWVGDGATFVTGADQDIQSIDAISSGTIDISDGTVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLSNVTVNGNLTNTSGAVSLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKMVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYLNNLRAANQAFMMERRDHAGGDGQTLNLRVIGGDYHYTAAGQLAQHEDTSTVQLSGDLFSGRWGTDGEWMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWFQHGNQKQGAWLDSWLQYAWFSNDVSEQEDGTDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANRARVSQSQGDDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDGSTISDDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>NZ_CP040067.1|WP_000990756.1|1668583_1669306_-|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG
MNAEKSPENHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEKHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNPITNSFKLGPGVDVNYMLHTQNK
>NZ_CP040067.1|WP_001281225.1|1669452_1672080_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>NZ_CP040067.1|WP_000012305.1|1672228_1673917_+|DUF2138-domain-containing-protein
MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYAGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKINSETVPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFKDDQQDTEATAIAGDLLSGKKRWQASFGLEERTAEKTPVRQRIVVSARWLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGAAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQTLNKTRPAMVDVIPTDGIVPLYINPQGIAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL
>NZ_CP040067.1|WP_001295211.1|1673913_1674537_+|DUF1175-domain-containing-protein
MRHGLLALICWLCCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANETLKVHDSKWLKSNGLSSQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYVIYHTGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR
>NZ_CP040067.1|WP_122633159.1|1674680_1679075_+|alpha-2-macroglobulin-family-protein
MRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNNQFSPLKKYPLVEQFRYPLWQAKPFEPQQGVKLEGASSNFISPQPGNIYIPLGQQEPGLYLVEAMVGGYRATTVVFVSDTVALSKVSGNELLVWTAGKKQGEAKPGSEILWTDGLGVMTRGVTDDSGTLQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRVDVKVMGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVDVTLDARNGGQGSFRLPENAVAGGYELRLAYRNQVYSSSFRVANYIKPHFEIGLALAKKEFKTGEAVSGKLQLLYPDGEPVKNARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDASGHVALNLPAADKPSRYLLTVSASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGESVVFRYAALESSKQVPVTYEWLRLEDRTSHSGELPSGGKSFTVNFAKPGNYNLTLRDKDGLILAGLSHAVSGKGSTAHTGTVDIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQYEARVPVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGELVNVELTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQALSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWRITARGMNGDGLVGQGRAYLRSEKNLYMKWSMPTVYRVGDKPAAGLFIFSQQDNEPVALVTKFAGAEMRQTLTLHKGANYISLTQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVEQQKNVMLGGGDNALMLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINTGSRLIPLSLAWRSLADHQSAAANDIRQMIQVNRLRLMQLAGPGARFTWWGEDGNGDAFLTAWAWYADWQASQAIGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAIARRGTKTEDFSEEDTRDINDSLILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQYAWDKAANSNQPLAHTVVLLNSGGDATQAAAILSGLTAEQSTIERALAMNWLAKYMATMPPVVLPAPAGAWAKHKLTGGGEYWRWVGQGVPDILSFGDELSPQNVQVRWREPAKTAQQSNIPVTVERQLYRLITGEEEMSFTLQPVTSNEIDSDALYLDEITLTSEQDAVLRYGQVEVPLPPGADVERTTWGISVNKPNAAKQQGQLLEIARNEMGELAYMVPVKELTGTVTFRHLLRFSQKGQFVLPPARYMRSYAPAQQSVAAGSEWTRMQVK
>NZ_CP040067.1|WP_001104488.1|1679075_1680725_+|DUF2300-domain-containing-protein
MNWRRIVWLLALVTLPTLAEEPPLQLALRGAQHDQLYKLSSSGVTNVSTLPDTLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFARYPLKKITAEKSTTAVKPGVLNGRYRVTFTNGNHITFVSHGETTLLSEKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTFLQQNANREGDCLTIPDSSATQRVSASPATTGARTMAAWTQDLIYAGDPVHYHGSRATEGTLSWRQATAQAGQGERYDQILAFAYPDNSLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRILQAETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD
>NZ_CP040067.1|WP_001567753.1|1680729_1681506_+|YfaP-family-protein
MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPVEGEDASFSQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPVHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW
>NZ_CP040067.1|WP_000786548.1|1681579_1682764_-|acetyl-CoA-C-acetyltransferase
MKNCVIVSAVRTAIGSFNGSLASTSAIDLGATVIKAAIERAKIDSQHVDEVIMGNVLQAGLGQNPARQALLKSGLAETVCGFTVNKVCGSGLKSVALAAQAIQAGQAQSIVAGGMENMSLAPYLLDAKARSGYRLGDGQVYDVILRDGLMCATHGYHMGITAENVAKEYGITREMQDELALHSQRKAAAAIESGAFTAEIVPVNVVTRKKTFVFSQDEFPKANSTAEALGALRPAFDKAGTVTAGNASGINDGAAALVIMEESAALAAGLTPLARIKSYASGGVPPALMGMGPVPATQKALQLAGLQLADIDLIEANEAFAAQFLAVGKTLGFDPEKVNVNGGAIALGHPIGASGARILVTLLHAMQARDKTLGLATLCIGGGQGIAMVIERLN

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Crispr_ID: NZ_CP040067_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040067_6

2225046-2225169

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040067_6

>merge|NZ_CP040067|6|2225046-2225169|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP040067|6|6|2225046-2225169|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040067.1\|WP_001069997.1\|2221262_2222048_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
NZ_CP040067.1\|WP_001678907.1\|2217780_2219883_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
NZ_CP040067.1\|WP_000098911.1\|2229049_2230198_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP040067.1\|WP_001373655.1\|2228368_2229010_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP040067.1\|WP_000528342.1\|2216468_2216678_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_CP040067.1\|WP_000587555.1\|2222051_2222864_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_CP040067.1\|WP_000701040.1\|2234320_2235490_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP040067.1\|WP_000269501.1\|2231812_2232745_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP040067.1\|WP_001310861.1\|2220597_2221266_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274451
NZ_CP040067.1\|WP_001070230.1\|2217133_2217760_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
NZ_CP040067.1\|WP_001295403.1\|2214500_2215913_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
NZ_CP040067.1\|WP_000102278.1\|2234065_2234155_+\|stress-response-protein-YnhF	unknown	unknown	unknown
NZ_CP040067.1\|WP_000190982.1\|2232741_2233767_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP040067.1\|WP_000212657.1\|2224605_2224911_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_CP040067.1\|WP_001174942.1\|2226780_2228154_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NZ_CP040067.1\|WP_000504352.1\|2219886_2220534_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
NZ_CP040067.1\|WP_000716929.1\|2222875_2224480_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP040067.1\|WP_000534291.1\|2225483_2226740_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602
NZ_CP040067.1\|WP_000007283.1\|2235635_2236217_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP040067.1\|WP_001182363.1\|2230488_2231700_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924

Protein	Function_ID	Function_description	E-value
NZ_CP040067.1\|WP_001069997.1\|2221262_2222048_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	5.33298e-163
NZ_CP040067.1\|WP_001678907.1\|2217780_2219883_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
NZ_CP040067.1\|WP_000098911.1\|2229049_2230198_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP040067.1\|WP_001373655.1\|2228368_2229010_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.8868e-122
NZ_CP040067.1\|WP_000528342.1\|2216468_2216678_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
NZ_CP040067.1\|WP_000587555.1\|2222051_2222864_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	9.78241e-175
NZ_CP040067.1\|WP_000701040.1\|2234320_2235490_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.92383e-98
NZ_CP040067.1\|WP_000269501.1\|2231812_2232745_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP040067.1\|WP_001310861.1\|2220597_2221266_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	2.09652e-76
NZ_CP040067.1\|WP_001070230.1\|2217133_2217760_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	6.99609e-140
NZ_CP040067.1\|WP_001295403.1\|2214500_2215913_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP040067.1\|WP_000190982.1\|2232741_2233767_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP040067.1\|WP_000212657.1\|2224605_2224911_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	1.12003e-64
NZ_CP040067.1\|WP_001174942.1\|2226780_2228154_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP040067.1\|WP_000504352.1\|2219886_2220534_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	2.81741e-122
NZ_CP040067.1\|WP_000716929.1\|2222875_2224480_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP040067.1\|WP_000534291.1\|2225483_2226740_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
NZ_CP040067.1\|WP_000007283.1\|2235635_2236217_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
NZ_CP040067.1\|WP_001182363.1\|2230488_2231700_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0

>NZ_CP040067.1|WP_000212657.1|2224605_2224911_-|monooxygenase
MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>NZ_CP040067.1|WP_000716929.1|2222875_2224480_-|FAD-NAD(P)-binding-protein
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPINCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLVVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFNRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD
>NZ_CP040067.1|WP_000587555.1|2222051_2222864_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGEIPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLAQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>NZ_CP040067.1|WP_001069997.1|2221262_2222048_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVLGLHALLRARGVKKSVTDYGEKIYLYCKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NZ_CP040067.1|WP_001310861.1|2220597_2221266_+|4Fe-4S-dicluster-domain-containing-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQQNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>NZ_CP040067.1|WP_000504352.1|2219886_2220534_+|YdhW-family-putative-oxidoreductase-system-protein
MGEMNHRDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLESIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>NZ_CP040067.1|WP_001678907.1|2217780_2219883_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKELFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIHWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPV
>NZ_CP040067.1|WP_001070230.1|2217133_2217760_+|ferredoxin-like-protein
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>NZ_CP040067.1|WP_000528342.1|2216468_2216678_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>NZ_CP040067.1|WP_001295403.1|2214500_2215913_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_CP040067.1|WP_000534291.1|2225483_2226740_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDQGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDGVTFIVGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>NZ_CP040067.1|WP_001174942.1|2226780_2228154_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSVIILQRASR
>NZ_CP040067.1|WP_001373655.1|2228368_2229010_+|riboflavin-synthase
MFTGIVQGTVKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NZ_CP040067.1|WP_000098911.1|2229049_2230198_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIASARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NZ_CP040067.1|WP_001182363.1|2230488_2231700_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>NZ_CP040067.1|WP_000269501.1|2231812_2232745_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NZ_CP040067.1|WP_000190982.1|2232741_2233767_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP040067.1|WP_000102278.1|2234065_2234155_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NZ_CP040067.1|WP_000701040.1|2234320_2235490_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS
>NZ_CP040067.1|WP_000007283.1|2235635_2236217_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Crispr_ID: NZ_CP040067_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040067_7

2878301-2878392

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040067_7

>merge|NZ_CP040067|7|2878301-2878392|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>NZ_CP040067|7|7|2878301-2878392|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040067.1\|WP_000209869.1\|2884067_2884667_-\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326
NZ_CP040067.1\|WP_001143120.1\|2879432_2879660_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182285
NZ_CP040067.1\|WP_001345643.1\|2873834_2874527_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_CP040067.1\|WP_001678465.1\|2865885_2867394_-\|sodium/proline-symporter-PutP	unknown	unknown	gnl\|CDD\|185317
NZ_CP040067.1\|WP_001295606.1\|2871817_2872456_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_CP040067.1\|WP_001120112.1\|2888511_2889204_+\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NZ_CP040067.1\|WP_001126787.1\|2874538_2874925_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_CP040067.1\|WP_000097602.1\|2881230_2882490_-\|YccE-family-protein	unknown	unknown	gnl\|CDD\|182074
NZ_CP040067.1\|WP_001028095.1\|2876343_2876838_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP040067.1\|WP_001044313.1\|2879697_2880939_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NZ_CP040067.1\|WP_001345642.1\|2872743_2873835_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP040067.1\|WP_001001184.1\|2875742_2876333_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP040067.1\|WP_001299828.1\|2867815_2871778_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP040067.1\|WP_001062101.1\|2884663_2887210_-\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_CP040067.1\|WP_001323674.1\|2874932_2875733_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP040067.1\|WP_001151437.1\|2878815_2879412_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP040067.1\|WP_000024560.1\|2883669_2883975_+\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_CP040067.1\|WP_000420629.1\|2882749_2883670_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP040067.1\|WP_001347171.1\|2876858_2878187_+\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NZ_CP040067.1\|WP_001323677.1\|2887209_2888382_-\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992

Protein	Function_ID	Function_description	E-value
NZ_CP040067.1\|WP_000209869.1\|2884067_2884667_-\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	5.28244e-84
NZ_CP040067.1\|WP_001143120.1\|2879432_2879660_+\|hypothetical-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44
NZ_CP040067.1\|WP_001345643.1\|2873834_2874527_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	2.60527e-169
NZ_CP040067.1\|WP_001678465.1\|2865885_2867394_-\|sodium/proline-symporter-PutP	gnl\|CDD\|185317	PRK15419, PRK15419, sodium/proline symporter PutP.	0
NZ_CP040067.1\|WP_001295606.1\|2871817_2872456_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	3.3044e-153
NZ_CP040067.1\|WP_001120112.1\|2888511_2889204_+\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	5.89892e-138
NZ_CP040067.1\|WP_001126787.1\|2874538_2874925_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	2.27835e-84
NZ_CP040067.1\|WP_000097602.1\|2881230_2882490_-\|YccE-family-protein	gnl\|CDD\|182074	PRK09784, PRK09784, YccE family protein.	0
NZ_CP040067.1\|WP_001028095.1\|2876343_2876838_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	3.76111e-106
NZ_CP040067.1\|WP_001044313.1\|2879697_2880939_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NZ_CP040067.1\|WP_001345642.1\|2872743_2873835_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP040067.1\|WP_001001184.1\|2875742_2876333_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	1.24775e-128
NZ_CP040067.1\|WP_001299828.1\|2867815_2871778_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP040067.1\|WP_001062101.1\|2884663_2887210_-\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_CP040067.1\|WP_001323674.1\|2874932_2875733_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	2.49482e-139
NZ_CP040067.1\|WP_001151437.1\|2878815_2879412_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	8.51484e-133
NZ_CP040067.1\|WP_000024560.1\|2883669_2883975_+\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	5.75956e-65
NZ_CP040067.1\|WP_000420629.1\|2882749_2883670_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NZ_CP040067.1\|WP_001347171.1\|2876858_2878187_+\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP040067.1\|WP_001323677.1\|2887209_2888382_-\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0

>NZ_CP040067.1|WP_001347171.1|2876858_2878187_+|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAIMGVQHAVAMFGATVLMPILMGLDPNLSILMSGVGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNLLGLGKAVDFTLVSHAAWFGLPHFSTPAFNSQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNRVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRKLVDVPPPEVVHQEP
>NZ_CP040067.1|WP_001028095.1|2876343_2876838_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEEALVSFDCRISQVVSVGTHDILFCAIEAIHRHATPYGLVWFDRSYHALMRPAC
>NZ_CP040067.1|WP_001001184.1|2875742_2876333_+|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWRETPVSDETLRELYALMKWGPTSANCSPARIVFIRTAEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPLLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQYVDDAFFAGSTLKSNLLINIGYGDNSKLYARLPRLSFEEACGLL
>NZ_CP040067.1|WP_001323674.1|2874932_2875733_+|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIEHYAVVGHALGALVGMQLALDYPASVTVLVCVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHAVRIRCPVQIICASDDLLVPSACSSELHAALPDSQKMVMRYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>NZ_CP040067.1|WP_001126787.1|2874538_2874925_+|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRTVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_CP040067.1|WP_001345643.1|2873834_2874527_+|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFVQKAALFNIETFFGWVSDVETFCDALSPTSFARIA
>NZ_CP040067.1|WP_001345642.1|2872743_2873835_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGSGKSDFKGDFFTMNDCRVSPQPSVPMKVICAGQSDAGMAFSAQYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVASVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA
>NZ_CP040067.1|WP_001295606.1|2871817_2872456_-|HTH-type-transcriptional-regulator-RutR
MTQGAVKTTGKRSRTVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR
>NZ_CP040067.1|WP_001299828.1|2867815_2871778_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQALPMLEQPVAAGEMSPVINPAEPKDIVGFVREATPREVEQALESAVNNAPIWFATPPVERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGQGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVVDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQTMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDDALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP040067.1|WP_001678465.1|2865885_2867394_-|sodium/proline-symporter-PutP
MAISTPMLVTFCVYIFGMILIGFIAWRSTKNFDDYILGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGMSYETALWAGAAATILYTFIGGFLAVSWTDTVQASLMIFALILTPVIVIISVGGFGDSLEVIKQKSIENVDMLKGLNFVAIISLMGWGLGYFGQPHILARFMAADSHHSIVHARRISMTWMILCLAGAVAVGFFGIAYFNEHPAVAGAVNQNAERVFIELAQILFNPWIAGILLSAILAAVMSTLSCQLLVCSSAITEDLYKAFLRKHASQKELVWVGRVMVLVVALVAIALAANPENRVLGLVSYAWAGFGAAFGPVVLFSVMWSRMTRNGALAGMIIGALTVIVWKQFGWLGVYEIIPGFIFGSIGIVVFSLLGKAPSAAMQKRFAEADAHYHSAPPSRLQES
>NZ_CP040067.1|WP_001151437.1|2878815_2879412_+|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_CP040067.1|WP_001143120.1|2879432_2879660_+|hypothetical-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NZ_CP040067.1|WP_001044313.1|2879697_2880939_-|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAATVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAQQGMVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDANGFCPMDKFDSVLNEAVK
>NZ_CP040067.1|WP_000097602.1|2881230_2882490_-|YccE-family-protein
MSSNIHGISCTANNYLKQAWNNIKNEHEKNQKYSITLFENTLVCFMRLYKEIRRQKAEDYIPCLECDSLEKEFEEMQNDNDLSLFLRTLRTNDTETYSGVSEGITYTIQYVRDIDIVRVSLPGRGSESITDFKGYYWYGFMEYIENINACDDVFSEYCLDDENMSIQPEWINTPGISDLDTGIDLSGISFIQSEINKTYGLKYAPVDGDGYCLLRAILVLKEHEYSWALGSHKTQKQVYEEFIKIVDKQTIEALVDTAFNDLREDVKTLFGVNLQSDNKIQGQGGFLSWSFLSFKKEFIDSCLNDKKCILHLPEFIFNDNKARLVLDTDPEQKVNEVKNFLTALSDSICSLFIVNSNVASISLGNESFSTDDDLEYGYLINTGNHYDVYLPPELFAQAYELNNKERNAQIDFLTRYAIY
>NZ_CP040067.1|WP_000420629.1|2882749_2883670_+|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHSDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHDLEIVVPVSPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPRKDWGKA
>NZ_CP040067.1|WP_000024560.1|2883669_2883975_+|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP
>NZ_CP040067.1|WP_000209869.1|2884067_2884667_-|molecular-chaperone-TorD
MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLAAAVNELENCIATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARRIDSLRQKTLTALWQWLPEFVVRCRQYDSFGFYAALSQLLLVLVESDHQNR
>NZ_CP040067.1|WP_001062101.1|2884663_2887210_-|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATDAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYAQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAYTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRNGDVVRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGAVEQVTAFNGPVEMVAQCEYVPASQVKS
>NZ_CP040067.1|WP_001323677.1|2887209_2888382_-|pentaheme-c-type-cytochrome-TorC
MRKLWNALRRPSARWSVLALVAIGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDMPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEIAHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK
>NZ_CP040067.1|WP_001120112.1|2888511_2889204_+|two-component-system-response-regulator-TorR
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC

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Crispr_ID: NZ_CP040067_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040067_8

3182819-3182930

Orphan

Consensus_repeat	Method
TTTTCTTACCTGATTCGGGTAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP040067_8

>merge|NZ_CP040067|8|3182819-3182930|PILER-CR
TTACCTGATTCGGGTAAGTGCCTTTACCTGATTTGGGTAAACTTTTCTTACCTGATTCAGGTAAATTTACCTCTTTCAGGTAAACTTTATTTTTCTTACCTGATTCGGGTAA

>NZ_CP040067|8|3|3182819-3182930|PILER-CR
TTACCTGATTCGGGTAAGTGCC	TTTACCTGATTTGGGTAAACTTTTC
TTACCTGATTCAGGTAAATTTA	CCTCTTTCAGGTAAACTTTATTTTTC
TTACCTGATTCGGGTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040067.1\|WP_000389051.1\|3185123_3185873_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040067.1\|WP_000224914.1\|3179053_3179224_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182029
NZ_CP040067.1\|WP_001403556.1\|3181135_3181327_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040067.1\|WP_001372464.1\|3181653_3182355_-\|replication-P-family-protein	unknown	unknown	gnl\|CDD\|369163
NZ_CP040067.1\|WP_001372487.1\|3178770_3179061_-\|DUF1364-domain-containing-protein	unknown	unknown	gnl\|CDD\|377777
NZ_CP040067.1\|WP_000145917.1\|3181363_3181657_-\|protein-ren	unknown	unknown	unknown
NZ_CP040067.1\|WP_072157016.1\|3179675_3179777_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040067.1\|WP_001372483.1\|3178411_3178774_-\|crossover-junction-endodeoxyribonuclease-RusA	unknown	unknown	gnl\|CDD\|182075
NZ_CP040067.1\|WP_001372450.1\|3188571_3189252_+\|YqaJ-viral-recombinase-family-protein	unknown	unknown	gnl\|CDD\|378216
NZ_CP040067.1\|WP_001372486.1\|3179223_3179679_-\|DNA-base-flipping-protein-YbcN	unknown	unknown	gnl\|CDD\|182057
NZ_CP040067.1\|WP_000825400.1\|3179869_3180322_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225675
NZ_CP040067.1\|WP_000210934.1\|3185869_3186697_+\|DUF3037-domain-containing-protein	unknown	unknown	gnl\|CDD\|378608
NZ_CP040067.1\|WP_001067458.1\|3183976_3184207_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243
NZ_CP040067.1\|WP_000858975.1\|3184311_3185001_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP040067.1\|WP_000720581.1\|3180318_3180879_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184367
NZ_CP040067.1\|WP_001182899.1\|3183367_3183907_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368819
NZ_CP040067.1\|WP_000233576.1\|3187205_3187412_+\|phage-encoded-cell-division-inhibitor-protein	unknown	unknown	gnl\|CDD\|236900
NZ_CP040067.1\|WP_000100847.1\|3187789_3188575_+\|phage-recombination-protein-Bet	unknown	unknown	gnl\|CDD\|273871
NZ_CP040067.1\|WP_072126246.1\|3189248_3189431_+\|DUF1317-domain-containing-protein	unknown	unknown	gnl\|CDD\|284449
NZ_CP040067.1\|WP_000995439.1\|3187487_3187784_+\|host-nuclease-inhibitor-protein-Gam	unknown	unknown	gnl\|CDD\|368728

Protein	Function_ID	Function_description	E-value
NZ_CP040067.1\|WP_000224914.1\|3179053_3179224_-\|hypothetical-protein	gnl\|CDD\|182029	PRK09689, PRK09689, prophage protein NinE; Provisional.	1.03602e-26
NZ_CP040067.1\|WP_001372483.1\|3178411_3178774_-\|crossover-junction-endodeoxyribonuclease-RusA	gnl\|CDD\|182075	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed.	4.10794e-71
NZ_CP040067.1\|WP_001372464.1\|3181653_3182355_-\|replication-P-family-protein	gnl\|CDD\|369163	pfam06992, Phage_lambda_P, Replication protein P. This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin.	1.06005e-83
NZ_CP040067.1\|WP_001372487.1\|3178770_3179061_-\|DUF1364-domain-containing-protein	gnl\|CDD\|377777	pfam07102, DUF1364, Protein of unknown function (DUF1364). This family consists of several bacterial and phage proteins of around 95 residues in length. The function of this family is unknown.	3.77585e-46
NZ_CP040067.1\|WP_000210934.1\|3185869_3186697_+\|DUF3037-domain-containing-protein	gnl\|CDD\|378608	pfam11236, DUF3037, Protein of unknown function (DUF3037). This bacterial family of proteins has no known function.	5.92844e-29
NZ_CP040067.1\|WP_001372450.1\|3188571_3189252_+\|YqaJ-viral-recombinase-family-protein	gnl\|CDD\|378216	pfam09588, YqaJ, YqaJ-like viral recombinase domain. This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit.	2.98824e-27
NZ_CP040067.1\|WP_001372486.1\|3179223_3179679_-\|DNA-base-flipping-protein-YbcN	gnl\|CDD\|182057	PRK09741, PRK09741, hypothetical protein; Provisional.	2.80673e-94
NZ_CP040067.1\|WP_000825400.1\|3179869_3180322_-\|hypothetical-protein	gnl\|CDD\|225675	COG3133, SlyB, Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane].	4.9678e-14
NZ_CP040067.1\|WP_000100847.1\|3187789_3188575_+\|phage-recombination-protein-Bet	gnl\|CDD\|273871	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet. This model represents the phage recombination protein Bet from a number of phage, including phage lambda. All members of this family are found in phage genomes or in putative prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions].	1.45393e-64
NZ_CP040067.1\|WP_001067458.1\|3183976_3184207_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	9.89251e-22
NZ_CP040067.1\|WP_000858975.1\|3184311_3185001_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	1.28713e-28
NZ_CP040067.1\|WP_000720581.1\|3180318_3180879_-\|hypothetical-protein	gnl\|CDD\|184367	PRK13883, PRK13883, conjugal transfer protein TrbH; Provisional.	0.00249649
NZ_CP040067.1\|WP_001182899.1\|3183367_3183907_-\|hypothetical-protein	gnl\|CDD\|368819	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT. YdaT_toxin is a family of putative bacterial toxins that are neutralized by the putative antitoxin YdaS, UniProtKB:P76063, family pfam144549.	1.232e-37
NZ_CP040067.1\|WP_000233576.1\|3187205_3187412_+\|phage-encoded-cell-division-inhibitor-protein	gnl\|CDD\|236900	PRK11354, kil, FtsZ inhibitor protein; Reviewed.	6.0586e-14
NZ_CP040067.1\|WP_072126246.1\|3189248_3189431_+\|DUF1317-domain-containing-protein	gnl\|CDD\|284449	pfam07026, DUF1317, Protein of unknown function (DUF1317). This family consists of several hypothetical bacterial and phage proteins of around 60 residues in length. The function of this family is unknown.	8.0633e-35
NZ_CP040067.1\|WP_000995439.1\|3187487_3187784_+\|host-nuclease-inhibitor-protein-Gam	gnl\|CDD\|368728	pfam06064, Gam, Host-nuclease inhibitor protein Gam. The Gam protein inhibits RecBCD nuclease and is found in both bacteria and bacteriophage.	8.40476e-53

>NZ_CP040067.1|WP_001372464.1|3181653_3182355_-|replication-P-family-protein
MKNIAAQMVNFDREQMCRIANNMPEQYDEKPQVQQVAQIINGVFSQLLATFPASLANRDQNELNEIRRQWVLAFRENGITTMEQVNAGMRVARRQNRPFLPSPGQFVAWCREEASVIAGLPNVSELVDMVYEYCRKRGLYPDAESYPWKSNAHYWLVTNLYQNMRANALTDAELRRKAADELVHMTARINRGEAIPEPVKQLPVMGGRPLNRAQALAKIAEIKAKFGLKGASV
>NZ_CP040067.1|WP_000145917.1|3181363_3181657_-|protein-ren
MTGKEAIIHYLGTHKSFCAQDVAAVTGATVTSINQAAAKMARTGILVIDGKVWRTVYYRFATREEREGKVSTNLIFKECRQSAAMKRVLAFYRGNFQ
>NZ_CP040067.1|WP_001403556.1|3181135_3181327_+|hypothetical-protein
MRAKIYQLSLWIFISFLAIYAFIIYKGSYIGVALHQIAWIIIIASGLIARLTKPKQKPISSNN
>NZ_CP040067.1|WP_000720581.1|3180318_3180879_-|hypothetical-protein
MKKIILLAMIIGSLTGCASVPPLNFSTPNVGVSQKKIDAEIKSLTVSLARPDEQKGDITAGMEAITPIWRESLQEALDRMTIFRDSSPNTVSLNVKVLALDVPAFGVSMTTKAIARYEIINRANGDIIYTQDIESTGTVPASYAFYGIVRARESVNRAVQNNITQFLQALESVDLSRPMFPVRVAK
>NZ_CP040067.1|WP_000825400.1|3179869_3180322_-|hypothetical-protein
MKRLFVIAPLLVLVGCAQNISPNSYSVGSVGMVNRTIAGTVISARGVDISGTSALGGTAGAAVGATAGSALGGGVRSNIVGAVGGAVIGGIAGAAIESSATKQTGMEYVVETENGNLMTIVQGKDPLFTQGSKVLVLYGNPSRIITDPRH
>NZ_CP040067.1|WP_072157016.1|3179675_3179777_-|hypothetical-protein
MRTYNPNSLLPSQMQKCTCDFLHPAFDLCGGEA
>NZ_CP040067.1|WP_001372486.1|3179223_3179679_-|DNA-base-flipping-protein-YbcN
MNLPQDGIKLHRGNFTAIGQQIQPYLEDGKCFRMVLKPWREKRSLSQNALSHMWYSEISEYLISRGKSFATAAWVKEALKHTYLGYETKELVDVVTGEITTIQSLRHTSDLDAGEMYVFLCKVEAWAMNIGCHLTIPQSCEFQLLRDKQEA
>NZ_CP040067.1|WP_000224914.1|3179053_3179224_-|hypothetical-protein
MATPLIRVMNGHIYRVPNRRKRKPELKPSEIPTLLGYTASLVDKKWLRLAARRNHG
>NZ_CP040067.1|WP_001372487.1|3178770_3179061_-|DUF1364-domain-containing-protein
MADLRKAARGRECQVRTPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDEIDRRTHFVDAAYAKECALEGMARTQVIWMKEGVIKA
>NZ_CP040067.1|WP_001372483.1|3178411_3178774_-|crossover-junction-endodeoxyribonuclease-RusA
MNTYNITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEMGNE
>NZ_CP040067.1|WP_001182899.1|3183367_3183907_-|hypothetical-protein
MQPLTYQQTSGFSPTAVINRSQTKQVPGHEKIRDAVRAWSAEDNQDVVATLIVNEYREQGGGTIDFPDDVSRARQKLFRFLDNKFDSEKYRNNVRELTPAILAVLPLEYRGYLVEQDSFMARLAEMEKELSEAKQAVILNAPRHQKLKEISEGIVSMFRVDPDLAGPLMAMVTTMLGAI
>NZ_CP040067.1|WP_001067458.1|3183976_3184207_-|helix-turn-helix-domain-containing-protein
MNPAIKTAINIVGSQKKLGAACEVSQQAVYKWLHNKAKVSPEHVGSIVTATGGVVKAYQIRPDLPKLFPHTEKNAA
>NZ_CP040067.1|WP_000858975.1|3184311_3185001_+|helix-turn-helix-transcriptional-regulator
MKTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTTKIVEIANALGVRAEWLSSGVGNMSDSTVQPIQSTVSHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKDKLLVISDNKSYSPWDPIEKDEMNRVFIFGKVIGSMPQTYRKHG
>NZ_CP040067.1|WP_000389051.1|3185123_3185873_+|hypothetical-protein
MECVASSNSAIPNVVEVIRRINEGSTQPFLCKCDDGQLYVLKSKPSMPPKNLLAEFISACLANDIGLPLPDFKIVFVPEELIEYSPDLQQQICTGYAFASLFIDGAIALTFTQSRNETIIPVEQQKLIYVFDKWILNADRTLTDKGGNVNILYDISNDKYYLIDHNLSFDQNAGPEDFSVHVYGPGNRKWQYDLVDRVEYRQRVVNSLHKLPAILDEIPEEWIVDEEFLPFVCTTLDKGDCDEFWSAIE
>NZ_CP040067.1|WP_000210934.1|3185869_3186697_+|DUF3037-domain-containing-protein
MTTPCLYSIVRYAPYAETEEFANIGVLLCAPKENYFDFQLTKRNDSRVKNFFHDDCIFPVAKDSIQRELQFAKMHATQIVGHQQLAQFFRYFTNKKESIFQFSSTRVILSENPKEELARIYNKYVNHSDYTKERREDVLARELKRSIDRIDGLKNVFKQATIDGYFAKFSMPLVAKKHDRIQCAIKPLAFTQAEPGKMMEHSDTWVMRITRAAEENLLSLDDILFTIETPESPNSGQSKVIDIIKRTMDAKKINHIPASNHKETIDFAKKILPQV
>NZ_CP040067.1|WP_000233576.1|3187205_3187412_+|phage-encoded-cell-division-inhibitor-protein
MVHQHYGTQTVNRGAVMPGMLVKHKDGTWTASANLRGRLYLHRGIERTYTRDLLVEVFLDGRGNGLNH
>NZ_CP040067.1|WP_000995439.1|3187487_3187784_+|host-nuclease-inhibitor-protein-Gam
MNAYYIQDRLEAQSWARHYQQIAREEKEAELADDMEKGLPQHLFESLCIDHLQRHGASKKAITRAFDDDVEFQERMAEHIRYMVETIAHHQVDIDSEV
>NZ_CP040067.1|WP_000100847.1|3187789_3188575_+|phage-recombination-protein-Bet
MSTALATLAGKLAERVGMDSVDPQELITTLRQTAFKGDASDAQFIALLIVANQYGLNPWTKEIYAFPDKQNGIVPVVGVDGWSRIINENQQFDGMDFEQDNESCTCRIYRKDRNHPICVTEWMDECRREPFKTREGREITGPWQSHPKRMLRHKAMIQCARLAFGFAGIYDKDEAERIVENTAYTAERQPERDITPVNDETMQEINTLLIALDKTWDDDLLPLCSQIFRRDIRASSELTQAEAVKALGFLKQKATEQKVAA
>NZ_CP040067.1|WP_001372450.1|3188571_3189252_+|YqaJ-viral-recombinase-family-protein
MTPDIILQRTGIDVRAVEQGDDAWHKLRLGVITASEVHNVIAKPRSGKKWPDMKMSYFHTLLAEVCTGVAPEVNAKALAWGKQYENDARTLFEFTSSVNITESPIIYRDENMRTACSPDGLCSDGNGLELKCPFTSRDFMKFRLGGFEAIKSAYMAQVQYSMWVTRKDAWYFANYDPRMKREGLHYVVVERDEKYMASFDEMVPEFIEKMDEALAEIGFVFGEQWR
>NZ_CP040067.1|WP_072126246.1|3189248_3189431_+|DUF1317-domain-containing-protein
MTHPHDNIRVGAITFVYSVTKRGWVFPGLSVIRNPLKAQRLAEEINNKRGAVCTKHLPLS

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Crispr_ID: NZ_CP040067_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040067_9

3194220-3194364

Orphan

Consensus_repeat	Method
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040067_9

>merge|NZ_CP040067|9|3194220-3194364|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

>NZ_CP040067|9|8|3194220-3194364|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	TGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTC
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040067.1\|WP_001091569.1\|3192870_3194154_+\|putative-acyl-CoA-thioester-hydrolase	unknown	unknown	gnl\|CDD\|236709
NZ_CP040067.1\|WP_001303849.1\|3191469_3191688_+\|excisionase	unknown	unknown	gnl\|CDD\|116439
NZ_CP040067.1\|WP_000120065.1\|3190417_3191020_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040067.1\|WP_000545745.1\|3191262_3191430_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040067.1\|WP_000101993.1\|3204289_3205063_-\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|182641
NZ_CP040067.1\|WP_000891692.1\|3202539_3203598_-\|molybdenum-ABC-transporter-ATP-binding-protein-ModC	unknown	unknown	gnl\|CDD\|182993
NZ_CP040067.1\|WP_000533646.1\|3191665_3192736_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271181
NZ_CP040067.1\|WP_001395510.1\|3189605_3189887_+\|cell-division-protein-ZapA	unknown	unknown	unknown
NZ_CP040067.1\|WP_001036475.1\|3196831_3198265_-\|anion-permease	unknown	unknown	gnl\|CDD\|279307
NZ_CP040067.1\|WP_000763365.1\|3189985_3190207_+\|TraR/DksA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|222775
NZ_CP040067.1\|WP_000815449.1\|3200570_3201566_-\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|182912
NZ_CP040067.1\|WP_071525073.1\|3191144_3191330_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040067.1\|WP_001372427.1\|3198340_3199393_-\|4-oxalomesaconate-tautomerase	unknown	unknown	gnl\|CDD\|380230
NZ_CP040067.1\|WP_000604034.1\|3203600_3204290_-\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|181841
NZ_CP040067.1\|WP_001372426.1\|3194387_3196649_-\|hydratase	unknown	unknown	gnl\|CDD\|183125
NZ_CP040067.1\|WP_000891515.1\|3205229_3205379_-\|multidrug-efflux-pump-accessory-protein-AcrZ	unknown	unknown	gnl\|CDD\|371231
NZ_CP040067.1\|WP_000213425.1\|3201720_3202539_+\|pyridoxal-phosphatase	unknown	unknown	gnl\|CDD\|182523
NZ_CP040067.1\|WP_000679972.1\|3199576_3200530_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176131
NZ_CP040067.1\|WP_023148020.1\|3189403_3189595_+\|DUF1382-family-protein	unknown	unknown	gnl\|CDD\|369224
NZ_CP040067.1\|WP_072126246.1\|3189248_3189431_+\|DUF1317-domain-containing-protein	unknown	unknown	gnl\|CDD\|284449

Protein	Function_ID	Function_description	E-value
NZ_CP040067.1\|WP_001091569.1\|3192870_3194154_+\|putative-acyl-CoA-thioester-hydrolase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
NZ_CP040067.1\|WP_001303849.1\|3191469_3191688_+\|excisionase	gnl\|CDD\|116439	pfam07825, Exc, Excisionase-like protein. The phage-encoded excisionase protein (Xis) is involved in excisive recombination by regulating the assembly of the excisive intasome and by inhibiting viral integration. It adopts an unusual 'winged'-helix structure in which two alpha helices are packed against two extended strands. Also present in the structure is a two-stranded anti-parallel beta-sheet, whose strands are connected by a four-residue 'wing'. During interaction with DNA, helix alpha2 is thought to insert into the major groove, while the wing contacts the adjacent minor groove or phosphodiester backbone. The C-terminal region of Xis is involved in interaction with phage-encoded integrase (Int), and a putative C-terminal alpha helix may fold upon interaction with Int and/or DNA.	8.49552e-35
NZ_CP040067.1\|WP_000815449.1\|3200570_3201566_-\|6-phosphogluconolactonase	gnl\|CDD\|182912	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional.	0
NZ_CP040067.1\|WP_072126246.1\|3189248_3189431_+\|DUF1317-domain-containing-protein	gnl\|CDD\|284449	pfam07026, DUF1317, Protein of unknown function (DUF1317). This family consists of several hypothetical bacterial and phage proteins of around 60 residues in length. The function of this family is unknown.	8.0633e-35
NZ_CP040067.1\|WP_000101993.1\|3204289_3205063_-\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	0
NZ_CP040067.1\|WP_000891692.1\|3202539_3203598_-\|molybdenum-ABC-transporter-ATP-binding-protein-ModC	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0
NZ_CP040067.1\|WP_000533646.1\|3191665_3192736_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271181	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase. Lambda-type integrases catalyze site-specific integration and excision of temperate bacteriophages and other mobile genetic elements to and from the bacterial host chromosome. They are tyrosine-based site-specific recombinase and belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The phage lambda integrase can bridge two different and well-separated DNA sequences called arm- and core-sites. The C-terminal domain binds, cleaves and re-ligates DNA strands at the core-sites, while the N-terminal domain is largely responsible for high-affinity binding to the arm-type sites.	8.02573e-62
NZ_CP040067.1\|WP_001036475.1\|3196831_3198265_-\|anion-permease	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	0
NZ_CP040067.1\|WP_000763365.1\|3189985_3190207_+\|TraR/DksA-family-transcriptional-regulator	gnl\|CDD\|222775	PHA00080, PHA00080, DksA-like zinc finger domain containing protein.	1.11886e-26
NZ_CP040067.1\|WP_001372427.1\|3198340_3199393_-\|4-oxalomesaconate-tautomerase	gnl\|CDD\|380230	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase.	0
NZ_CP040067.1\|WP_001372426.1\|3194387_3196649_-\|hydratase	gnl\|CDD\|183125	PRK11413, PRK11413, putative hydratase; Provisional.	0
NZ_CP040067.1\|WP_000891515.1\|3205229_3205379_-\|multidrug-efflux-pump-accessory-protein-AcrZ	gnl\|CDD\|371231	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ. AcrZ is associated with the AcrA-TolC multidrug efflux pump, it may enhance the ability of the pump to recognize and export certain substrates.	1.04381e-17
NZ_CP040067.1\|WP_000213425.1\|3201720_3202539_+\|pyridoxal-phosphatase	gnl\|CDD\|182523	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional.	0
NZ_CP040067.1\|WP_000679972.1\|3199576_3200530_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176131	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.09679e-82
NZ_CP040067.1\|WP_023148020.1\|3189403_3189595_+\|DUF1382-family-protein	gnl\|CDD\|369224	pfam07131, DUF1382, Protein of unknown function (DUF1382). This family consists of several hypothetical Escherichia coli and bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.	8.16312e-23
NZ_CP040067.1\|WP_000604034.1\|3203600_3204290_-\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|181841	PRK09421, modB, molybdate ABC transporter permease subunit.	2.41762e-146

>NZ_CP040067.1|WP_001091569.1|3192870_3194154_+|putative-acyl-CoA-thioester-hydrolase
MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPILSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNAFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEAKK
>NZ_CP040067.1|WP_000533646.1|3191665_3192736_+|tyrosine-type-recombinase/integrase
MGRRRSHERRDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTVLHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKIEIK
>NZ_CP040067.1|WP_001303849.1|3191469_3191688_+|excisionase
MYLTLQEWNARQRRPRSLETVRRWVRECRIFPPPVKDGREYLFHESAVKVDLNRPVTGSLLKRIRNGKKAKS
>NZ_CP040067.1|WP_000545745.1|3191262_3191430_+|hypothetical-protein
MHFRVTGEWNGEPFNRVIEAENISDCYDHWMLWAQIAHADVTNIRIEELKEHQAA
>NZ_CP040067.1|WP_071525073.1|3191144_3191330_-|hypothetical-protein
MFSASITLLNGSPFHSPVTRKCIYHLHKTKPAVASSDKRNPRQCEDAVHCCYTLFCSQRKR
>NZ_CP040067.1|WP_000120065.1|3190417_3191020_-|hypothetical-protein
MSYFLRKKWMVNLSGSGKILWALNMKKDSYPYLICMTVSGLIFIFLFFWWRADIYRVTFLNQSISHYYILFSMGIAFLLSLFWVKKGIVKQSGWKSLSAYLKVYAGMCIFAGFFLIIPLTTLTYFLPGETSSYVAPYRYTSGSSKSCSGAEVDDPDLHENIRICYPYGNYEYDNIIYVEKKINILGAVVTYAQTARDDTE
>NZ_CP040067.1|WP_000763365.1|3189985_3190207_+|TraR/DksA-family-transcriptional-regulator
MADIIDSASEIEELQRNTAIKMRRLNHQAISATHCCECGDPIDERRRLAVQGCRTCASCQQDLELISKQRGSK
>NZ_CP040067.1|WP_001395510.1|3189605_3189887_+|cell-division-protein-ZapA
MHFSGSGLHILCAYACRHGACSMTPQQENALRSIARQANSEIKKARQQFPDKNVDDICRSVLKKHRETVTLMGFTPTHLSLAIGMLNGVFKER
>NZ_CP040067.1|WP_023148020.1|3189403_3189595_+|DUF1382-family-protein
MHKASPVELRTSIEMAHSLAQIGVRFVPIPVETDEEFHTLAAFLSQKLEMMVAKAEADERDQV
>NZ_CP040067.1|WP_072126246.1|3189248_3189431_+|DUF1317-domain-containing-protein
MTHPHDNIRVGAITFVYSVTKRGWVFPGLSVIRNPLKAQRLAEEINNKRGAVCTKHLPLS
>NZ_CP040067.1|WP_001372426.1|3194387_3196649_-|hydratase
MIKLSEKGVFLASNNEIIAEEHFTGEIKKEEAQKGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHVFGLSAAQRYGGIFVPPHIAVIHQYMREMMAGGGKMILGSDSHTRYGALGTMAVGEGGGELVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQLNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYKIDTLNQNLTDILREIEIESERVAHGKAKLSLLDKVENGRLKVQQGIIAGCSGGNYENVIAAANALRGQSCGNDTFSLAVYPSSQPVFMDLAQKGVVADLIGAGAIIRTAFCGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLTSASELDCWDNVPEYAFDVTPYKNRVYQGFVKGATQQPLIYGPNIKDWPELGALTDNIVLKVCSKILDEVTTTDELIPSGETSSYRSNPIGLAEFTLSRRDPGYVGRSKATAELENQRLAGNVSELTEVFARIKQIAGQEHIDPLQTEIGSMVYAVKPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEVGDYIYIPGIKAALDNPGTTFKGYVIHEDAPVTEITLYMGSLTAEEREIIKAGSLINFNKNRQM
>NZ_CP040067.1|WP_001036475.1|3196831_3198265_-|anion-permease
MNKKSLWKLILILAIPCIIGFMPAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIAVAASMVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAAFVTTGLGKRIAYLLIGKIGNTTLGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEPEKSPRRVGHYLMMSIYMVTKTTSYMFFTAMAGNILALKMINDILHLQISWGGWALAAGLPGIIMLLVTPLVIYTMYPPEIKKVDNKTIAKAGLAELGPMKIREKMLLGVFVLALLGWIFSKSLGVDESTVAIVVMATMLLLGIVTWEDVVKNKGGWNTLIWYGGIIGLSSLLSKVKFFEWLAEVFKNNLAFDGHGNVAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYGGMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNMLIGWNML
>NZ_CP040067.1|WP_001372427.1|3198340_3199393_-|4-oxalomesaconate-tautomerase
MKKIPCVMMRGGTSRGAFLLAEHLPEDQTQRDKILMAIMGSGNDLEIDGIGGGNPLTSKVAIISRSSDLRADVDYLFAQVIVHEQRVDTTPNCGNMLSGVGAFAIENGLIAATSPVTRVRIRNVNTGTFIEADVQTPNGVVEYEGSARIDGVPGTAAPVALTFLNAAGTKTGKVFPTDNQIDYFDDVPVTCIDMAMPVVIIPAEYLGKTGYELPAELDADKALLARIESIRLQAGKAMGLGDVSNMVIPKPVLISPAQKGGAINVRYFMPHSCHRALAITGAIAISSSCALEGTVTRQIVPSVGYGNINIEHPSGALDVHLSNEGQDATTLRASVIRTTRKIFSGEVYLP
>NZ_CP040067.1|WP_000679972.1|3199576_3200530_+|LysR-family-transcriptional-regulator
MKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHIQLFERTTRKVTLTKAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIG
>NZ_CP040067.1|WP_000815449.1|3200570_3201566_-|6-phosphogluconolactonase
MKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYSIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH
>NZ_CP040067.1|WP_000213425.1|3201720_3202539_+|pyridoxal-phosphatase
MTTRVIALDLDGTLLTPKKTLLPSSIEALARAREAGYQLIIVTGRHHVAIHPFYQALALDTPAICCNGTYLYDYHAKTVLEADPMPVNKALQLIEMLNEHHIHGLMYVDDAMVYEHPTGHVIRTSNWAQTLPPEQRPTFTQVASLAETAQQVNAVWKFALTHDDLPQLQHFGKHVEHELGLECEWSWHDQVDIARGGNSKGKRLTKWVEAQGWSMENVVAFGDNFNDISMLEAAGTGVAMGNADDAVKARANIVIGDNTTDSIAQFIYSHLI
>NZ_CP040067.1|WP_000891692.1|3202539_3203598_-|molybdenum-ABC-transporter-ATP-binding-protein-ModC
MLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAISGLTRPQKGRIVLNGRVLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMSKSMVDQFDKLVALLGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLDIPRKRELLPYLQRLTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGSSVMNPWLPKEQQSSILKVTVLEHHPHYAMTALALGDQHLWVNKLDEPLQAALRIRIQASDVSLVLQPPQQTSIRNVLRAKVVNSYDDNGQVEVELEVGGKTLWARISPWARDELAIKPGLWLYAQIKSVSITA
>NZ_CP040067.1|WP_000604034.1|3203600_3204290_-|molybdate-ABC-transporter-permease-subunit
MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLYDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEWLARISRERAGR
>NZ_CP040067.1|WP_000101993.1|3204289_3205063_-|molybdate-ABC-transporter-substrate-binding-protein
MARKWLNLFAGAALSFAVAGNALADEGKITVFAAASLTNAMQDIATQYKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVAPKASEQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVASKGVKVVAIFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTTK
>NZ_CP040067.1|WP_000891515.1|3205229_3205379_-|multidrug-efflux-pump-accessory-protein-AcrZ
MLELLKSLVFAVIMVPVVMAIILGLIYGLGEVFNIFSGVGKKDQPGQNH

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Crispr_ID: NZ_CP040067_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040067_10

3880546-3880661

Orphan

Consensus_repeat	Method
AACGCCTGATGCGACGCTGACGCGTCTTATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040067_10

>merge|NZ_CP040067|10|3880546-3880661|CRISPRCasFinder
AACGCCTGATGCGACGCTGACGCGTCTTATCTGGCCTACGCGCTGTGTTTTTGTAGGCCGGATAAGCAAAGCGCATCCGGCATTCAACGCCTGATGCGACGCTGGCGCGTCTTATC

>NZ_CP040067|10|9|3880546-3880661|CRISPRCasFinder
AACGCCTGATGCGACGCTGACGCGTCTTATC	TGGCCTACGCGCTGTGTTTTTGTAGGCCGGATAAGCAAAGCGCATCCGGCATTC
AACGCCTGATGCGACGCTGGCGCGTCTTATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040067.1\|WP_001200579.1\|3887693_3888509_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP040067.1\|WP_000151734.1\|3879023_3880526_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP040067.1\|WP_000637846.1\|3868561_3869740_-\|sugar-efflux-transporter-SetA	unknown	unknown	gnl\|CDD\|129977
NZ_CP040067.1\|WP_000235700.1\|3872839_3874450_+\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	unknown	unknown	gnl\|CDD\|181853
NZ_CP040067.1\|WP_000746150.1\|3888763_3891118_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP040067.1\|WP_000800453.1\|3891170_3892457_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP040067.1\|WP_000241271.1\|3892456_3893446_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP040067.1\|WP_001300811.1\|3876095_3876974_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP040067.1\|WP_001371424.1\|3877312_3879013_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP040067.1\|WP_000035637.1\|3881495_3883847_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP040067.1\|WP_000888642.1\|3880725_3881421_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP040067.1\|WP_001371422.1\|3871880_3872864_+\|thiamine-ABC-transporter-substrate-binding-subunit	unknown	unknown	gnl\|CDD\|236883
NZ_CP040067.1\|WP_001065381.1\|3893442_3894264_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP040067.1\|WP_000610901.1\|3894266_3894644_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP040067.1\|WP_000525176.1\|3886917_3887577_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP040067.1\|WP_001117011.1\|3883999_3886906_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP040067.1\|WP_000916291.1\|3874433_3875132_+\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	unknown	unknown	gnl\|CDD\|182716
NZ_CP040067.1\|WP_001297366.1\|3870061_3871717_+\|HTH-type-transcriptional-regulator-SgrR	unknown	unknown	gnl\|CDD\|184188
NZ_CP040067.1\|WP_001148402.1\|3875245_3876010_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP040067.1\|WP_001248770.1\|3869841_3869973_-\|glucose-uptake-inhibitor-SgrT	unknown	unknown	gnl\|CDD\|374203

Protein	Function_ID	Function_description	E-value
NZ_CP040067.1\|WP_001200579.1\|3887693_3888509_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.49529e-169
NZ_CP040067.1\|WP_000151734.1\|3879023_3880526_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP040067.1\|WP_000637846.1\|3868561_3869740_-\|sugar-efflux-transporter-SetA	gnl\|CDD\|129977	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP040067.1\|WP_000235700.1\|3872839_3874450_+\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	gnl\|CDD\|181853	PRK09433, thiP, thiamine transporter membrane protein; Reviewed.	0
NZ_CP040067.1\|WP_000746150.1\|3888763_3891118_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP040067.1\|WP_000800453.1\|3891170_3892457_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP040067.1\|WP_000241271.1\|3892456_3893446_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP040067.1\|WP_001300811.1\|3876095_3876974_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP040067.1\|WP_001371424.1\|3877312_3879013_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP040067.1\|WP_000035637.1\|3881495_3883847_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP040067.1\|WP_000888642.1\|3880725_3881421_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	1.31794e-177
NZ_CP040067.1\|WP_001371422.1\|3871880_3872864_+\|thiamine-ABC-transporter-substrate-binding-subunit	gnl\|CDD\|236883	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional.	0
NZ_CP040067.1\|WP_001065381.1\|3893442_3894264_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	2.76119e-148
NZ_CP040067.1\|WP_000610901.1\|3894266_3894644_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	3.63315e-76
NZ_CP040067.1\|WP_000525176.1\|3886917_3887577_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	1.37214e-159
NZ_CP040067.1\|WP_001117011.1\|3883999_3886906_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP040067.1\|WP_000916291.1\|3874433_3875132_+\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	gnl\|CDD\|182716	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ.	1.49788e-164
NZ_CP040067.1\|WP_001297366.1\|3870061_3871717_+\|HTH-type-transcriptional-regulator-SgrR	gnl\|CDD\|184188	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR.	0
NZ_CP040067.1\|WP_001148402.1\|3875245_3876010_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	2.3759e-49
NZ_CP040067.1\|WP_001248770.1\|3869841_3869973_-\|glucose-uptake-inhibitor-SgrT	gnl\|CDD\|374203	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT.	0.00206924

>NZ_CP040067.1|WP_000151734.1|3879023_3880526_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMTPATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAVEEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLPKLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDALRWNEVYYGFRR
>NZ_CP040067.1|WP_001371424.1|3877312_3879013_+|ribulokinase
MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIESMEAALKTVLAELSVEQRAAVVGIGVDTTGSTPAPIDADGNVLALRPEFAENPNAMFVLWKDHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIELCDWVPALLSGTTGPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLGWPLEQLAAQHPELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAKVHADIPSAQQKMASAVEKTLQPCSEQAQRFEQLYRRYQQWAMSAEQHYLPTSAPAQAAQAVPTL
>NZ_CP040067.1|WP_001300811.1|3876095_3876974_-|arabinose-operon-transcriptional-regulator-AraC
MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCEEKVNDVAVKLS
>NZ_CP040067.1|WP_001148402.1|3875245_3876010_-|DedA-family-protein
MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAGLGALIGSGELSFWHAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTEHALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGILAGAAIDIPAGMQSGEFKWLLLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLLWLTPLISAIGVVALVVLIRHPLMPVYIDILRKVVGG
>NZ_CP040067.1|WP_000916291.1|3874433_3875132_+|thiamine-ABC-transporter-ATP-binding-protein-ThiQ
MLKLTDITWLYHHLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGSLTIDGVDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQQEKMHAIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGKTNELLSGKASASALLGITG
>NZ_CP040067.1|WP_000235700.1|3872839_3874450_+|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP
MATRRQPLIPGWLIPGVSAATLVVAVALAAFLALWWNAPQGNWVAVWQDSYLWHVVRFSFWQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLILPVLVAVFGILSVYGRQGWLASLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQALENIPGEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLGGGPQATTIELAIYQALSYDYDPARAAMLALIQMVCCLGLVLLSQRLSKAIAPGTTLLQGWRDPDDRLHSRICDTVLIVLALLLLLPPLLAVIVDGVNRQLPEVLAQPVLWQALWTSLRIALAAGVLCVVLTMMLLWSSRELRARQKMLAGQALEMSGMLILAMPGIVLATGFFLLLNNTIGLPQSADGIVIFTNALMAIPYALKVLENPMRDITARYSMLCQSLGIEGWSRLKVVELRALKRPLAQALAFACVLSIGDFGVVALFGNDDFRTLPFYLYQQIGSYRSQDGAVTALILLLLCFLLFTVIEKLPGRNVKTD
>NZ_CP040067.1|WP_001371422.1|3871880_3872864_+|thiamine-ABC-transporter-substrate-binding-subunit
MLKKCLPLLLLCTAPVFAKPVLIVYTYDSFAADWGPGPKIKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAKSGVAADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIPTGNWMYPVANVTLPAGFEQLTKPATTLEFTPAEVAAQRQAWISEWQRAVSR
>NZ_CP040067.1|WP_001297366.1|3870061_3871717_+|HTH-type-transcriptional-regulator-SgrR
MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKATVRQMLVSHLGRSFRQGRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISPLHWRFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIADIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRNTTNQLKIQAFDDFFGYRALIDEVNVWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEGCYYLLFDSRTHRGANQQVRDWVSYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHARTIKSEKPAGLESLTLTFYQDHSEHRVIAGIMQQILASHQVTLEIKEISYDQWHEGEIESDIWLNSANFTLPLDFSLFAHLCEVPLLQHCIPIDWQADAARWRNGEMNLANWCQQLVASKAMVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDP
>NZ_CP040067.1|WP_001248770.1|3869841_3869973_-|glucose-uptake-inhibitor-SgrT
MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES
>NZ_CP040067.1|WP_000637846.1|3868561_3869740_-|sugar-efflux-transporter-SetA
MIWIMTMARRMNGVYAAFMLVAFMMGVAGALQAPTLSLFLSREVGAQPFWIGLFYTVNAIAGIGVSLWLAKRSDSQGDRRKLIIFCCLMAIGNALLFAFNRHYLTLITCGVLLASLANTAMPQLFALAREYADNSAREVVMFSSVMRAQLSLAWVIGPPLAFMLALNYGFTVMFSIAAGIFTLSLVLIAFMLPSVARVELPSENALSMQGGWQDSNVRMLFVASTLMWTCNTMYIIDMPLWISSELGLPDKLAGFLMGTAAGLEIPAMILAGYYVKRYGKRRMMVIAVAAGVLFYTGLIFFHSRMALMTLQLFNAVFIGIVAGIGMLWFQDLMPGRAGAATTLFTNSISTGVILAGVIQGAIAQSWGHFAVYWVIAVISVVALFLTAKVKDV
>NZ_CP040067.1|WP_000888642.1|3880725_3881421_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRLVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSVMTADDMVVVSIATGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP040067.1|WP_000035637.1|3881495_3883847_+|DNA-polymerase-II
MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVEGDIRNGAIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPENGDASALDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYIRETIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF
>NZ_CP040067.1|WP_001117011.1|3883999_3886906_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDALRLIVVTHQ
>NZ_CP040067.1|WP_000525176.1|3886917_3887577_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF
>NZ_CP040067.1|WP_001200579.1|3887693_3888509_-|co-chaperone-DjlA
MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWFANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFRVGKSDNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEELGISRAQFDQFLRMMQGGAQFGGGYQQQTGGGNWQQAQRGPTLEDACNVLGVKPTDDATTIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQQAYELIKQQKGFK
>NZ_CP040067.1|WP_000746150.1|3888763_3891118_+|LPS-assembly-protein-LptD
MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQGDTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVRTVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGENRYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQLPVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEFRYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKVSDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTEAKLLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTLEPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRIYDDAAVERFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRGGIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYASPEYIQATLPKYYSTAEQYKNGISQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWDNDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQNSL
>NZ_CP040067.1|WP_000800453.1|3891170_3892457_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATADIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN
>NZ_CP040067.1|WP_000241271.1|3892456_3893446_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLTDRAAMLGLPLTLRTYSPNSPAQPQTAGTLTLLPVALRESVTAGQLAVENGHYVVETLARACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPLLDELRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGRGEADVGSFITALNLAIKMIVNTQ
>NZ_CP040067.1|WP_001065381.1|3893442_3894264_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPLQES
>NZ_CP040067.1|WP_000610901.1|3894266_3894644_+|Co2+/Mg2+-efflux-protein-ApaG
MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPFSIDIPVFRLAVPTLIH

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Crispr_ID: NZ_CP040067_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040067_11

3903562-3903694

Orphan

Consensus_repeat	Method
ATCACCAATATTGAAAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP040067_11

>merge|NZ_CP040067|11|3903562-3903694|PILER-CR
ATCACCAATATTGAAAATGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGTTCCTCACCAATATTGAAAACATGGCGTAGCAAAAAGAAATTTTCAATATTGCTTTATGGATCACCAATATTGAAAG

>NZ_CP040067|11|4|3903562-3903694|PILER-CR
ATCACCAATATTGAAAA	TGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGTTC
CTCACCAATATTGAAAA	CATGGCGTAGCAAAAAGAAATTTTCAATATTGCTTTATGG
ATCACCAATATTGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040067.1\|WP_000597260.1\|3915075_3916224_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_CP040067.1\|WP_000692204.1\|3902700_3903471_-\|electron-transfer-flavoprotein-FixA	unknown	unknown	gnl\|CDD\|179569
NZ_CP040067.1\|WP_001091499.1\|3901744_3902686_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|235120
NZ_CP040067.1\|WP_000787103.1\|3903944_3905459_+\|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter	unknown	unknown	gnl\|CDD\|179568
NZ_CP040067.1\|WP_000203747.1\|3900123_3900411_-\|ferredoxin-like-protein-FixX	unknown	unknown	gnl\|CDD\|185346
NZ_CP040067.1\|WP_001183198.1\|3898734_3900066_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
NZ_CP040067.1\|WP_000624375.1\|3895570_3896050_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP040067.1\|WP_000333120.1\|3911180_3911576_-\|carnitine-metabolism-transcriptional-regulator-CaiF	unknown	unknown	gnl\|CDD\|183154
NZ_CP040067.1\|WP_000349926.1\|3906760_3907978_+\|L-carnitine-CoA-transferase	unknown	unknown	gnl\|CDD\|179589
NZ_CP040067.1\|WP_000004404.1\|3909713_3910499_+\|crotonobetainyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|179599
NZ_CP040067.1\|WP_000377129.1\|3896241_3898104_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	unknown	unknown	gnl\|CDD\|235131
NZ_CP040067.1\|WP_000351348.1\|3908051_3909605_+\|crotonobetaine/carnitine-CoA-ligase	unknown	unknown	gnl\|CDD\|181195
NZ_CP040067.1\|WP_000610901.1\|3894266_3894644_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP040067.1\|WP_000196532.1\|3911610_3911829_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040067.1\|WP_001126376.1\|3911836_3915058_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP040067.1\|WP_000122876.1\|3910504_3911095_+\|carnitine-operon-protein-CaiE	unknown	unknown	gnl\|CDD\|184189
NZ_CP040067.1\|WP_000257192.1\|3894650_3895493_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP040067.1\|WP_000600725.1\|3898096_3898627_-\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	unknown	unknown	gnl\|CDD\|234852
NZ_CP040067.1\|WP_001287715.1\|3900407_3901694_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182273
NZ_CP040067.1\|WP_000347117.1\|3905489_3906632_+\|crotonobetainyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|179566

Protein	Function_ID	Function_description	E-value
NZ_CP040067.1\|WP_000692204.1\|3902700_3903471_-\|electron-transfer-flavoprotein-FixA	gnl\|CDD\|179569	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed.	6.8619e-170
NZ_CP040067.1\|WP_001091499.1\|3901744_3902686_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|235120	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein.	0
NZ_CP040067.1\|WP_000787103.1\|3903944_3905459_+\|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter	gnl\|CDD\|179568	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter.	0
NZ_CP040067.1\|WP_000203747.1\|3900123_3900411_-\|ferredoxin-like-protein-FixX	gnl\|CDD\|185346	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional.	2.23442e-69
NZ_CP040067.1\|WP_001183198.1\|3898734_3900066_-\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.4298e-59
NZ_CP040067.1\|WP_000624375.1\|3895570_3896050_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.07206e-127
NZ_CP040067.1\|WP_000333120.1\|3911180_3911576_-\|carnitine-metabolism-transcriptional-regulator-CaiF	gnl\|CDD\|183154	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF.	2.96175e-74
NZ_CP040067.1\|WP_000349926.1\|3906760_3907978_+\|L-carnitine-CoA-transferase	gnl\|CDD\|179589	PRK03525, PRK03525, L-carnitine CoA-transferase.	0
NZ_CP040067.1\|WP_000004404.1\|3909713_3910499_+\|crotonobetainyl-CoA-hydratase	gnl\|CDD\|179599	PRK03580, PRK03580, crotonobetainyl-CoA hydratase.	1.76707e-178
NZ_CP040067.1\|WP_000377129.1\|3896241_3898104_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0
NZ_CP040067.1\|WP_000351348.1\|3908051_3909605_+\|crotonobetaine/carnitine-CoA-ligase	gnl\|CDD\|181195	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated.	0
NZ_CP040067.1\|WP_000610901.1\|3894266_3894644_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	3.63315e-76
NZ_CP040067.1\|WP_000597260.1\|3915075_3916224_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_CP040067.1\|WP_001126376.1\|3911836_3915058_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP040067.1\|WP_000122876.1\|3910504_3911095_+\|carnitine-operon-protein-CaiE	gnl\|CDD\|184189	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.	2.12106e-142
NZ_CP040067.1\|WP_000257192.1\|3894650_3895493_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP040067.1\|WP_000600725.1\|3898096_3898627_-\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	gnl\|CDD\|234852	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF.	2.99389e-133
NZ_CP040067.1\|WP_001287715.1\|3900407_3901694_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182273	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.	0
NZ_CP040067.1\|WP_000347117.1\|3905489_3906632_+\|crotonobetainyl-CoA-dehydrogenase	gnl\|CDD\|179566	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated.	0

>NZ_CP040067.1|WP_000692204.1|3902700_3903471_-|electron-transfer-flavoprotein-FixA
MKIITCYKCVPDEQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAAWSEQQVAAPKQRERQRIVIEGDGEEQIAAFAENLRKVI
>NZ_CP040067.1|WP_001091499.1|3901744_3902686_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNTFSQVWVFSDTPSRLPELMNGAQALANQINTFVLNDADGAQAIQLGANHVWKLNGKPDDRMIEDYAGVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLKAAVSNDASTVSVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPDASRTGETHTVEWQAPAVAITRTATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALAR
>NZ_CP040067.1|WP_001287715.1|3900407_3901694_-|FAD-dependent-oxidoreductase
MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDMRMYQKLPAFLDNPRMFSGYPELAVGVARDLFTIDGSAPELMRKKILRHGKKVGFINLIKDGMKGVTVL
>NZ_CP040067.1|WP_000203747.1|3900123_3900411_-|ferredoxin-like-protein-FixX
MTSPVNVDVKLGVNKFNVDEEHPHIVVKADADKQVLELLVKACPAGLYKKQDDGSVRFDYAGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG
>NZ_CP040067.1|WP_001183198.1|3898734_3900066_-|MFS-transporter
MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG
>NZ_CP040067.1|WP_000600725.1|3898096_3898627_-|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF
MILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQARHYKQRLLEWQEAHHG
>NZ_CP040067.1|WP_000377129.1|3896241_3898104_-|glutathione-regulated-potassium-efflux-system-protein-KefC
MDSHTLIQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAEIGVVLMLFIIGLELDPQRLWKLRAAVFGGGALQMVICGGLLGLFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAIPLVAMIPLLATSSASTTMGAFALSALKVAGALVLVVLLGRYVTRPALRFVARSGLREVFSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLLENPLRIVILLLGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQGSEFAFVVFGAAQMANVLEPEWAKSLTLAVALSMAATPILLVILNRLEQSSTEEAREADEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSS
>NZ_CP040067.1|WP_000624375.1|3895570_3896050_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGRHTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR
>NZ_CP040067.1|WP_000257192.1|3894650_3895493_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNNWSPELRGLGRLRFITNAFTRMRFCFPNGQLDMYSKESPEEAPAPLKPWFAIPGPVAEEYSIAFGHWASLEGKGTPEGIYALDTGCCWGGTLTCLRWEDKQYFVQPSNRHKDLGEAAAS
>NZ_CP040067.1|WP_000610901.1|3894266_3894644_+|Co2+/Mg2+-efflux-protein-ApaG
MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPFSIDIPVFRLAVPTLIH
>NZ_CP040067.1|WP_000787103.1|3903944_3905459_+|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter
MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVLGLTASTWILWTVLGSNTLLLIDKNIINIPNLIEQYGVARAIIETWAALPLSTATMWGFFILCFIATVTLVNACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQNWKD
>NZ_CP040067.1|WP_000347117.1|3905489_3906632_+|crotonobetainyl-CoA-dehydrogenase
MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR
>NZ_CP040067.1|WP_000349926.1|3906760_3907978_+|L-carnitine-CoA-transferase
MDHLPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGLTATTAALAALHKARETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMSKGKDPYYAGCGLYKCADGYIVMELVGITQIEECFKDIGLAHLLSTPEIPEGTQLIHRIECPYGPLVEEKLDAWLAAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKVED
>NZ_CP040067.1|WP_000351348.1|3908051_3909605_+|crotonobetaine/carnitine-CoA-ligase
MDIIGGQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLLTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQKYRATITECIPMMIRTLMVQPPSANDRQHRLREVMFYLNLSEQEKDAFCERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK
>NZ_CP040067.1|WP_000004404.1|3909713_3910499_+|crotonobetainyl-CoA-hydratase
MSESLHLTRNGSILEITLDRPKANAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGTEEALRWGIVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAVEGPLAFAEKRDPVWKGR
>NZ_CP040067.1|WP_000122876.1|3910504_3911095_+|carnitine-operon-protein-CaiE
MSYYAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEENRPRLQGTTDVTPKR
>NZ_CP040067.1|WP_000333120.1|3911180_3911576_-|carnitine-metabolism-transcriptional-regulator-CaiF
MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVAEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSRDKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR
>NZ_CP040067.1|WP_000196532.1|3911610_3911829_+|hypothetical-protein
MTRFEAIKQGHIKIVDISIVCNFTVDKCELNPAYVIKNIDSPKDLLNGQKKRSSSENRITYSIKLADEKYPP
>NZ_CP040067.1|WP_001126376.1|3911836_3915058_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNAEFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK
>NZ_CP040067.1|WP_000597260.1|3915075_3916224_-|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTAK

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP040067_8	8.2\|3182888\|26\|NZ_CP040067\|PILER-CR	3182888-3182913	26	NZ_CP040067.1	2744785-2744810	0	1.0

1. spacer 8.2|3182888|26|NZ_CP040067|PILER-CR matches to position: 2744785-2744810, mismatch: 0, identity: 1.0

atttacctctttcaggtaaactttat	CRISPR spacer
atttacctctttcaggtaaactttat	Protospacer
**************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040067_7	7.1\|2878327\|40\|NZ_CP040067\|CRISPRCasFinder	2878327-2878366	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	0	1.0
NZ_CP040067_8	8.1\|3182841\|25\|NZ_CP040067\|PILER-CR	3182841-3182865	25	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	44572-44596	0	1.0
NZ_CP040067_8	8.2\|3182888\|26\|NZ_CP040067\|PILER-CR	3182888-3182913	26	NC_049946	Escherichia virus Lambda_4A7 genome assembly, chromosome: 1	37604-37629	0	1.0
NZ_CP040067_8	8.2\|3182888\|26\|NZ_CP040067\|PILER-CR	3182888-3182913	26	LR595861	Escherichia virus Lambda_4C10 genome assembly, chromosome: 1	37887-37912	0	1.0
NZ_CP040067_11	11.1\|3903579\|42\|NZ_CP040067\|PILER-CR	3903579-3903620	42	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141085-141126	0	1.0
NZ_CP040067_8	8.2\|3182888\|26\|NZ_CP040067\|PILER-CR	3182888-3182913	26	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	44524-44549	1	0.962
NZ_CP040067_11	11.2\|3903638\|40\|NZ_CP040067\|PILER-CR	3903638-3903677	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141028-141067	1	0.975
NZ_CP040067_6	6.1\|2225089\|38\|NZ_CP040067\|CRISPRCasFinder	2225089-2225126	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_CP040067_8	8.1\|3182841\|25\|NZ_CP040067\|PILER-CR	3182841-3182865	25	NC_049946	Escherichia virus Lambda_4A7 genome assembly, chromosome: 1	37652-37676	2	0.92
NZ_CP040067_8	8.1\|3182841\|25\|NZ_CP040067\|PILER-CR	3182841-3182865	25	LR595861	Escherichia virus Lambda_4C10 genome assembly, chromosome: 1	37935-37959	2	0.92
NZ_CP040067_8	8.2\|3182888\|26\|NZ_CP040067\|PILER-CR	3182888-3182913	26	NZ_CP015341	Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence	35661-35686	4	0.846
NZ_CP040067_1	1.1\|647671\|42\|NZ_CP040067\|CRISPRCasFinder	647671-647712	42	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	30214-30255	7	0.833
NZ_CP040067_3	3.7\|1136402\|32\|NZ_CP040067\|PILER-CR,CRISPRCasFinder,CRT	1136402-1136433	32	NZ_MG299151	Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence	51276-51307	7	0.781
NZ_CP040067_3	3.7\|1136402\|32\|NZ_CP040067\|PILER-CR,CRISPRCasFinder,CRT	1136402-1136433	32	NZ_KY471628	Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence	45716-45747	7	0.781
NZ_CP040067_3	3.7\|1136402\|32\|NZ_CP040067\|PILER-CR,CRISPRCasFinder,CRT	1136402-1136433	32	NZ_MG299131	Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence	51276-51307	7	0.781
NZ_CP040067_3	3.7\|1136402\|32\|NZ_CP040067\|PILER-CR,CRISPRCasFinder,CRT	1136402-1136433	32	NZ_KY471629	Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence	45716-45747	7	0.781
NZ_CP040067_3	3.7\|1136402\|32\|NZ_CP040067\|PILER-CR,CRISPRCasFinder,CRT	1136402-1136433	32	NZ_MG299133	Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence	51276-51307	7	0.781
NZ_CP040067_3	3.7\|1136402\|32\|NZ_CP040067\|PILER-CR,CRISPRCasFinder,CRT	1136402-1136433	32	NZ_MG299128	Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence	51276-51307	7	0.781
NZ_CP040067_3	3.7\|1136402\|32\|NZ_CP040067\|PILER-CR,CRISPRCasFinder,CRT	1136402-1136433	32	NZ_MG299147	Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence	51276-51307	7	0.781
NZ_CP040067_3	3.7\|1136402\|32\|NZ_CP040067\|PILER-CR,CRISPRCasFinder,CRT	1136402-1136433	32	NC_018995	Escherichia coli plasmid pHUSEC41-1, complete sequence	29015-29046	7	0.781
NZ_CP040067_3	3.7\|1136402\|32\|NZ_CP040067\|PILER-CR,CRISPRCasFinder,CRT	1136402-1136433	32	NZ_CP053235	Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence	78292-78323	7	0.781
NZ_CP040067_3	3.7\|1136402\|32\|NZ_CP040067\|PILER-CR,CRISPRCasFinder,CRT	1136402-1136433	32	NZ_CP005999	Escherichia coli B7A plasmid pEB1, complete sequence	39563-39594	7	0.781
NZ_CP040067_3	3.7\|1136402\|32\|NZ_CP040067\|PILER-CR,CRISPRCasFinder,CRT	1136402-1136433	32	KU932021	Escherichia coli plasmid pEC3I, complete sequence	51902-51933	7	0.781
NZ_CP040067_3	3.7\|1136402\|32\|NZ_CP040067\|PILER-CR,CRISPRCasFinder,CRT	1136402-1136433	32	NZ_CP024154	Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence	18560-18591	7	0.781
NZ_CP040067_3	3.7\|1136402\|32\|NZ_CP040067\|PILER-CR,CRISPRCasFinder,CRT	1136402-1136433	32	NC_011754	Escherichia coli ED1a plasmid pECOED, complete sequence	49240-49271	7	0.781
NZ_CP040067_3	3.7\|1136402\|32\|NZ_CP040067\|PILER-CR,CRISPRCasFinder,CRT	1136402-1136433	32	NZ_CP015141	Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence	81434-81465	7	0.781
NZ_CP040067_3	3.7\|1136402\|32\|NZ_CP040067\|PILER-CR,CRISPRCasFinder,CRT	1136402-1136433	32	NZ_LR213460	Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3	28916-28947	7	0.781
NZ_CP040067_3	3.7\|1136402\|32\|NZ_CP040067\|PILER-CR,CRISPRCasFinder,CRT	1136402-1136433	32	NZ_MH287044	Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence	36182-36213	7	0.781
NZ_CP040067_3	3.7\|1136402\|32\|NZ_CP040067\|PILER-CR,CRISPRCasFinder,CRT	1136402-1136433	32	NZ_MH618673	Escherichia coli strain 838B plasmid p838B-R, complete sequence	32230-32261	7	0.781
NZ_CP040067_4	4.1\|1158938\|31\|NZ_CP040067\|CRISPRCasFinder	1158938-1158968	31	NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	62682-62712	7	0.774
NZ_CP040067_4	4.1\|1158938\|31\|NZ_CP040067\|CRISPRCasFinder	1158938-1158968	31	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	1222106-1222136	7	0.774
NZ_CP040067_4	4.1\|1158938\|31\|NZ_CP040067\|CRISPRCasFinder	1158938-1158968	31	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	2467672-2467702	7	0.774
NZ_CP040067_4	4.4\|1159121\|31\|NZ_CP040067\|CRISPRCasFinder	1159121-1159151	31	NZ_CP034185	Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence	17977-18007	7	0.774
NZ_CP040067_4	4.7\|1159304\|31\|NZ_CP040067\|CRISPRCasFinder	1159304-1159334	31	NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	530641-530671	7	0.774
NZ_CP040067_1	1.1\|647671\|42\|NZ_CP040067\|CRISPRCasFinder	647671-647712	42	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	24899-24940	8	0.81
NZ_CP040067_3	3.6\|1136341\|32\|NZ_CP040067\|PILER-CR,CRISPRCasFinder,CRT	1136341-1136372	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1417960-1417991	8	0.75
NZ_CP040067_4	4.4\|1159121\|31\|NZ_CP040067\|CRISPRCasFinder	1159121-1159151	31	NZ_CP017753	Cupriavidus sp. USMAHM13 plasmid unnamed1, complete sequence	97498-97528	8	0.742
NZ_CP040067_4	4.7\|1159304\|31\|NZ_CP040067\|CRISPRCasFinder	1159304-1159334	31	NZ_CP036297	Planctomycetes bacterium Pla86 plasmid pPla86_1, complete sequence	14953-14983	8	0.742
NZ_CP040067_4	4.7\|1159304\|31\|NZ_CP040067\|CRISPRCasFinder	1159304-1159334	31	NZ_CP036288	Planctomycetes bacterium Pla133 plasmid pPla133_1, complete sequence	14983-15013	8	0.742
NZ_CP040067_4	4.7\|1159304\|31\|NZ_CP040067\|CRISPRCasFinder	1159304-1159334	31	NZ_CP015882	Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence	3454-3484	8	0.742
NZ_CP040067_4	4.7\|1159304\|31\|NZ_CP040067\|CRISPRCasFinder	1159304-1159334	31	NZ_CP017750	Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence	148992-149022	8	0.742
NZ_CP040067_4	4.10\|1158938\|32\|NZ_CP040067\|PILER-CR,CRT	1158938-1158969	32	NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	62682-62713	8	0.75
NZ_CP040067_4	4.10\|1158938\|32\|NZ_CP040067\|PILER-CR,CRT	1158938-1158969	32	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	1222106-1222137	8	0.75
NZ_CP040067_4	4.10\|1158938\|32\|NZ_CP040067\|PILER-CR,CRT	1158938-1158969	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	2467671-2467702	8	0.75
NZ_CP040067_4	4.10\|1158938\|32\|NZ_CP040067\|PILER-CR,CRT	1158938-1158969	32	NC_008759	Polaromonas naphthalenivorans CJ2 plasmid pPNAP03, complete sequence	12670-12701	8	0.75
NZ_CP040067_4	4.13\|1159121\|32\|NZ_CP040067\|PILER-CR,CRT	1159121-1159152	32	NZ_CP034185	Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence	17977-18008	8	0.75
NZ_CP040067_4	4.13\|1159121\|32\|NZ_CP040067\|PILER-CR,CRT	1159121-1159152	32	NZ_CP017753	Cupriavidus sp. USMAHM13 plasmid unnamed1, complete sequence	97497-97528	8	0.75
NZ_CP040067_4	4.16\|1159304\|32\|NZ_CP040067\|PILER-CR,CRT	1159304-1159335	32	NZ_CP017750	Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence	148991-149022	8	0.75
NZ_CP040067_4	4.16\|1159304\|32\|NZ_CP040067\|PILER-CR,CRT	1159304-1159335	32	NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	530640-530671	8	0.75
NZ_CP040067_4	4.17\|1159365\|32\|NZ_CP040067\|PILER-CR,CRT	1159365-1159396	32	NZ_CP006991	Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence	532343-532374	8	0.75
NZ_CP040067_1	1.1\|647671\|42\|NZ_CP040067\|CRISPRCasFinder	647671-647712	42	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	24786-24827	9	0.786
NZ_CP040067_4	4.1\|1158938\|31\|NZ_CP040067\|CRISPRCasFinder	1158938-1158968	31	NC_011987	Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence	86182-86212	9	0.71
NZ_CP040067_4	4.2\|1158999\|31\|NZ_CP040067\|CRISPRCasFinder	1158999-1159029	31	CP011075	Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence	244686-244716	9	0.71
NZ_CP040067_4	4.2\|1158999\|31\|NZ_CP040067\|CRISPRCasFinder	1158999-1159029	31	GU075905	Prochlorococcus phage P-HM2, complete genome	78536-78566	9	0.71
NZ_CP040067_4	4.4\|1159121\|31\|NZ_CP040067\|CRISPRCasFinder	1159121-1159151	31	NZ_CP017750	Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence	405875-405905	9	0.71
NZ_CP040067_4	4.4\|1159121\|31\|NZ_CP040067\|CRISPRCasFinder	1159121-1159151	31	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	2248363-2248393	9	0.71
NZ_CP040067_4	4.8\|1159365\|31\|NZ_CP040067\|CRISPRCasFinder	1159365-1159395	31	NZ_CP040723	Rhodococcus pyridinivorans strain YF3 plasmid unnamed4, complete sequence	35740-35770	9	0.71
NZ_CP040067_4	4.13\|1159121\|32\|NZ_CP040067\|PILER-CR,CRT	1159121-1159152	32	NZ_CP017750	Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence	405875-405906	9	0.719
NZ_CP040067_4	4.16\|1159304\|32\|NZ_CP040067\|PILER-CR,CRT	1159304-1159335	32	NZ_CP036297	Planctomycetes bacterium Pla86 plasmid pPla86_1, complete sequence	14953-14984	9	0.719
NZ_CP040067_4	4.16\|1159304\|32\|NZ_CP040067\|PILER-CR,CRT	1159304-1159335	32	NZ_CP036288	Planctomycetes bacterium Pla133 plasmid pPla133_1, complete sequence	14983-15014	9	0.719
NZ_CP040067_4	4.16\|1159304\|32\|NZ_CP040067\|PILER-CR,CRT	1159304-1159335	32	NZ_CP015882	Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence	3454-3485	9	0.719
NZ_CP040067_4	4.17\|1159365\|32\|NZ_CP040067\|PILER-CR,CRT	1159365-1159396	32	NZ_CP040723	Rhodococcus pyridinivorans strain YF3 plasmid unnamed4, complete sequence	35740-35771	9	0.719
NZ_CP040067_3	3.1\|1136036\|32\|NZ_CP040067\|PILER-CR,CRISPRCasFinder,CRT	1136036-1136067	32	NZ_CP030933	Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence	51062-51093	10	0.688
NZ_CP040067_4	4.10\|1158938\|32\|NZ_CP040067\|PILER-CR,CRT	1158938-1158969	32	NC_011987	Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence	86181-86212	10	0.688
NZ_CP040067_4	4.11\|1158999\|32\|NZ_CP040067\|PILER-CR,CRT	1158999-1159030	32	CP011075	Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence	244686-244717	10	0.688
NZ_CP040067_4	4.11\|1158999\|32\|NZ_CP040067\|PILER-CR,CRT	1158999-1159030	32	GU075905	Prochlorococcus phage P-HM2, complete genome	78536-78567	10	0.688
NZ_CP040067_4	4.13\|1159121\|32\|NZ_CP040067\|PILER-CR,CRT	1159121-1159152	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	2248362-2248393	10	0.688

1. spacer 7.1|2878327|40|NZ_CP040067|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 8.1|3182841|25|NZ_CP040067|PILER-CR matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcctttacctgatttgggtaaac	CRISPR spacer
gtgcctttacctgatttgggtaaac	Protospacer
*************************

3. spacer 8.2|3182888|26|NZ_CP040067|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

atttacctctttcaggtaaactttat	CRISPR spacer
atttacctctttcaggtaaactttat	Protospacer
**************************

4. spacer 8.2|3182888|26|NZ_CP040067|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

atttacctctttcaggtaaactttat	CRISPR spacer
atttacctctttcaggtaaactttat	Protospacer
**************************

5. spacer 11.1|3903579|42|NZ_CP040067|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 0, identity: 1.0

tgtcacacgcagataaatccaactttcaatattgttaagttc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
******************************************

6. spacer 8.2|3182888|26|NZ_CP040067|PILER-CR matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 1, identity: 0.962

atttacctctttcaggtaaactttat	CRISPR spacer
atttacctctttaaggtaaactttat	Protospacer
************ *************

7. spacer 11.2|3903638|40|NZ_CP040067|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.975

catggcgtagcaaaaagaaattttcaatattgctttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
********** *****************************

8. spacer 6.1|2225089|38|NZ_CP040067|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

9. spacer 8.1|3182841|25|NZ_CP040067|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 2, identity: 0.92

gtgcctttacctgatttgggtaaac	CRISPR spacer
acgcctttacctgatttgggtaaac	Protospacer
..***********************

10. spacer 8.1|3182841|25|NZ_CP040067|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 2, identity: 0.92

gtgcctttacctgatttgggtaaac	CRISPR spacer
acgcctttacctgatttgggtaaac	Protospacer
..***********************

11. spacer 8.2|3182888|26|NZ_CP040067|PILER-CR matches to NZ_CP015341 (Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.846

atttacctctttcaggtaaactttat	CRISPR spacer
aggtatctcattcaggtaaactttat	Protospacer
*  **.*** ****************

12. spacer 1.1|647671|42|NZ_CP040067|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 7, identity: 0.833

acagcagtcggatgcggcgtaaacaccttatctgacctacgt	CRISPR spacer
acaaatgccggatgcggcgtaaacgccttatctggcctacgc	Protospacer
***.  *.****************.*********.******.

13. spacer 3.7|1136402|32|NZ_CP040067|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG299151 (Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

14. spacer 3.7|1136402|32|NZ_CP040067|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY471628 (Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

15. spacer 3.7|1136402|32|NZ_CP040067|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG299131 (Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

16. spacer 3.7|1136402|32|NZ_CP040067|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY471629 (Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

17. spacer 3.7|1136402|32|NZ_CP040067|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG299133 (Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

18. spacer 3.7|1136402|32|NZ_CP040067|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG299128 (Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

19. spacer 3.7|1136402|32|NZ_CP040067|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG299147 (Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

20. spacer 3.7|1136402|32|NZ_CP040067|PILER-CR,CRISPRCasFinder,CRT matches to NC_018995 (Escherichia coli plasmid pHUSEC41-1, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

21. spacer 3.7|1136402|32|NZ_CP040067|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053235 (Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

22. spacer 3.7|1136402|32|NZ_CP040067|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP005999 (Escherichia coli B7A plasmid pEB1, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

23. spacer 3.7|1136402|32|NZ_CP040067|PILER-CR,CRISPRCasFinder,CRT matches to KU932021 (Escherichia coli plasmid pEC3I, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

24. spacer 3.7|1136402|32|NZ_CP040067|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024154 (Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

25. spacer 3.7|1136402|32|NZ_CP040067|PILER-CR,CRISPRCasFinder,CRT matches to NC_011754 (Escherichia coli ED1a plasmid pECOED, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

26. spacer 3.7|1136402|32|NZ_CP040067|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015141 (Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

27. spacer 3.7|1136402|32|NZ_CP040067|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR213460 (Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

28. spacer 3.7|1136402|32|NZ_CP040067|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH287044 (Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

29. spacer 3.7|1136402|32|NZ_CP040067|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH618673 (Escherichia coli strain 838B plasmid p838B-R, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

30. spacer 4.1|1158938|31|NZ_CP040067|CRISPRCasFinder matches to NC_007336 (Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.774

ttgcccgcgcaattccgggagcatccgcaat	CRISPR spacer
tccctatcgcaatgccggcagcatccgcaat	Protospacer
*. *.  ****** **** ************

31. spacer 4.1|1158938|31|NZ_CP040067|CRISPRCasFinder matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.774

ttgcccgcgcaattccgggagcatccgcaat	CRISPR spacer
ttgcgcgcgcaattccgtgagcagcgccatc	Protospacer
**** ************ ***** *  ** .

32. spacer 4.1|1158938|31|NZ_CP040067|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

ttgcccgcgcaattccgggagcatccgcaat	CRISPR spacer
ttgcgcgcgcaattccgtgagcagcgccatc	Protospacer
**** ************ ***** *  ** .

33. spacer 4.4|1159121|31|NZ_CP040067|CRISPRCasFinder matches to NZ_CP034185 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

cccgtcaccgacgcgcagtggcgctaccgtg	CRISPR spacer
agcgtcaccgacgcgcagggccgctaccaac	Protospacer
  **************** * *******.

34. spacer 4.7|1159304|31|NZ_CP040067|CRISPRCasFinder matches to NC_007336 (Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.774

ccgaacggctggcgaagcaggtggctggcgt	CRISPR spacer
ccgaacaggtggcgaagcaggtgatgggcca	Protospacer
******.* **************.. ***

35. spacer 1.1|647671|42|NZ_CP040067|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 8, identity: 0.81

acagcagtcggatgcggcgtaaacaccttatctgacctacgt	CRISPR spacer
attgatgtcggatgcggcgtaaacgccttatccgacctacaa	Protospacer
*. *  ******************.*******.*******.

36. spacer 3.6|1136341|32|NZ_CP040067|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tcaacgcgctcagacgttgcgtgagtgaacca	CRISPR spacer
acaacgcggtcggacgttgcgtgattaccccg	Protospacer
 ******* **.************ *.  **.

37. spacer 4.4|1159121|31|NZ_CP040067|CRISPRCasFinder matches to NZ_CP017753 (Cupriavidus sp. USMAHM13 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

cccgtcaccgacgcgcagtggcgctaccgtg	CRISPR spacer
gacgtcaccgacgcgcagtcgcgcttcttca	Protospacer
  ***************** ***** *. ..

38. spacer 4.7|1159304|31|NZ_CP040067|CRISPRCasFinder matches to NZ_CP036297 (Planctomycetes bacterium Pla86 plasmid pPla86_1, complete sequence) position: , mismatch: 8, identity: 0.742

ccgaacggctggcgaagcaggtggctggcgt	CRISPR spacer
agcggcagctggcgatgcaggtggcttgcgt	Protospacer
   ..*.******** ********** ****

39. spacer 4.7|1159304|31|NZ_CP040067|CRISPRCasFinder matches to NZ_CP036288 (Planctomycetes bacterium Pla133 plasmid pPla133_1, complete sequence) position: , mismatch: 8, identity: 0.742

ccgaacggctggcgaagcaggtggctggcgt	CRISPR spacer
agcggcagctggcgatgcaggtggcttgcgt	Protospacer
   ..*.******** ********** ****

40. spacer 4.7|1159304|31|NZ_CP040067|CRISPRCasFinder matches to NZ_CP015882 (Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence) position: , mismatch: 8, identity: 0.742

ccgaacggctggcgaagcaggtggctggcgt	CRISPR spacer
ttgcgcagctggcgcagcaggtggctgccga	Protospacer
..* .*.******* ************ **

41. spacer 4.7|1159304|31|NZ_CP040067|CRISPRCasFinder matches to NZ_CP017750 (Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

ccgaacggctggcgaagcaggtggctggcgt	CRISPR spacer
gggtacggctggcgaaggaggcggctgcgga	Protospacer
  * ************* ***.*****  *

42. spacer 4.10|1158938|32|NZ_CP040067|PILER-CR,CRT matches to NC_007336 (Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

ttgcccgcgcaattccgggagcatccgcaatt	CRISPR spacer
tccctatcgcaatgccggcagcatccgcaatc	Protospacer
*. *.  ****** **** ************.

43. spacer 4.10|1158938|32|NZ_CP040067|PILER-CR,CRT matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.75

ttgcccgcgcaattccgggagcatccgcaatt	CRISPR spacer
ttgcgcgcgcaattccgtgagcagcgccatca	Protospacer
**** ************ ***** *  ** .

44. spacer 4.10|1158938|32|NZ_CP040067|PILER-CR,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ttgcccgcgcaattccgggagcatccgcaatt	CRISPR spacer
ttgcgcgcgcaattccgtgagcagcgccatca	Protospacer
**** ************ ***** *  ** .

45. spacer 4.10|1158938|32|NZ_CP040067|PILER-CR,CRT matches to NC_008759 (Polaromonas naphthalenivorans CJ2 plasmid pPNAP03, complete sequence) position: , mismatch: 8, identity: 0.75

ttgcccgcg-----caattccgggagcatccgcaatt	CRISPR spacer
-----cgtgaaactcatttccgggagcatccgcattt	Protospacer
     **.*     ** ***************** **

46. spacer 4.13|1159121|32|NZ_CP040067|PILER-CR,CRT matches to NZ_CP034185 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cccgtcaccgacgcgcagtggcgctaccgtga	CRISPR spacer
agcgtcaccgacgcgcagggccgctaccaact	Protospacer
  **************** * *******.

47. spacer 4.13|1159121|32|NZ_CP040067|PILER-CR,CRT matches to NZ_CP017753 (Cupriavidus sp. USMAHM13 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cccgtcaccgacgcgcagtggcgctaccgtga	CRISPR spacer
gacgtcaccgacgcgcagtcgcgcttcttcaa	Protospacer
  ***************** ***** *. ..*

48. spacer 4.16|1159304|32|NZ_CP040067|PILER-CR,CRT matches to NZ_CP017750 (Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ccgaacggctggcgaagcaggtggctggcgta	CRISPR spacer
gggtacggctggcgaaggaggcggctgcggaa	Protospacer
  * ************* ***.*****  * *

49. spacer 4.16|1159304|32|NZ_CP040067|PILER-CR,CRT matches to NC_007336 (Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

ccgaacggctggcgaagcaggtggctggcgta	CRISPR spacer
ccgaacaggtggcgaagcaggtgatgggccag	Protospacer
******.* **************.. ***  .

50. spacer 4.17|1159365|32|NZ_CP040067|PILER-CR,CRT matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 8, identity: 0.75

gtttaccgccccgcagaggcgctggcagatcc	CRISPR spacer
catcatcctcccgcagatgcgctggccgatcc	Protospacer
  *.*.* .******** ******** *****

51. spacer 1.1|647671|42|NZ_CP040067|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 9, identity: 0.786

acagcagtcggatgcggcgtaaacaccttatctgacctacgt	CRISPR spacer
gttgatgtcggatgcggcgtaaacgccttatccgacctacaa	Protospacer
.. *  ******************.*******.*******.

52. spacer 4.1|1158938|31|NZ_CP040067|CRISPRCasFinder matches to NC_011987 (Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence) position: , mismatch: 9, identity: 0.71

ttgcccgcgcaattccgggagcatccgcaat	CRISPR spacer
gctaccgcgcaattcgaggagcatccgctgg	Protospacer
 .  *********** .*********** .

53. spacer 4.2|1158999|31|NZ_CP040067|CRISPRCasFinder matches to CP011075 (Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

acggacaaaatatatattgatttgcgaatta	CRISPR spacer
tgaggcaaaatatagattgatttccgaaaat	Protospacer
  .*.********* ******** ****

54. spacer 4.2|1158999|31|NZ_CP040067|CRISPRCasFinder matches to GU075905 (Prochlorococcus phage P-HM2, complete genome) position: , mismatch: 9, identity: 0.71

acggacaaaatatatattgatttgcgaatta	CRISPR spacer
acggaaaaattatatattgattttacttctg	Protospacer
***** *** *************     .*.

55. spacer 4.4|1159121|31|NZ_CP040067|CRISPRCasFinder matches to NZ_CP017750 (Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

cccgtcaccgacgcgcagtggcgctaccgtg	CRISPR spacer
gacgtcactgacgcgcagtcgcgcttcttca	Protospacer
  ******.********** ***** *. ..

56. spacer 4.4|1159121|31|NZ_CP040067|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.71

cccgtcaccgacgcgcagtggcgctaccgtg	CRISPR spacer
gacatcaccgacgcccagtggcgcgacgtcc	Protospacer
  *.********** ********* **  .

57. spacer 4.8|1159365|31|NZ_CP040067|CRISPRCasFinder matches to NZ_CP040723 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.71

gtttaccgccccgcagaggcgctggcagatc	CRISPR spacer
cgagaccgcctcgccgaggcgctggcagcga	Protospacer
    ******.*** *************

58. spacer 4.13|1159121|32|NZ_CP040067|PILER-CR,CRT matches to NZ_CP017750 (Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtcaccgacgcgcagtggcgctaccgtga	CRISPR spacer
gacgtcactgacgcgcagtcgcgcttcttcaa	Protospacer
  ******.********** ***** *. ..*

59. spacer 4.16|1159304|32|NZ_CP040067|PILER-CR,CRT matches to NZ_CP036297 (Planctomycetes bacterium Pla86 plasmid pPla86_1, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaacggctggcgaagcaggtggctggcgta	CRISPR spacer
agcggcagctggcgatgcaggtggcttgcgtg	Protospacer
   ..*.******** ********** ****.

60. spacer 4.16|1159304|32|NZ_CP040067|PILER-CR,CRT matches to NZ_CP036288 (Planctomycetes bacterium Pla133 plasmid pPla133_1, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaacggctggcgaagcaggtggctggcgta	CRISPR spacer
agcggcagctggcgatgcaggtggcttgcgtg	Protospacer
   ..*.******** ********** ****.

61. spacer 4.16|1159304|32|NZ_CP040067|PILER-CR,CRT matches to NZ_CP015882 (Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaacggctggcgaagcaggtggctggcgta	CRISPR spacer
ttgcgcagctggcgcagcaggtggctgccgag	Protospacer
..* .*.******* ************ ** .

62. spacer 4.17|1159365|32|NZ_CP040067|PILER-CR,CRT matches to NZ_CP040723 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

gtttaccgccccgcagaggcgctggcagatcc	CRISPR spacer
cgagaccgcctcgccgaggcgctggcagcgac	Protospacer
    ******.*** *************   *

63. spacer 3.1|1136036|32|NZ_CP040067|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030933 (Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence) position: , mismatch: 10, identity: 0.688

tccacgctgtaacggccatcattaagtttagt	CRISPR spacer
ccgctgctgtgacgcccatcattaagttactc	Protospacer
.*  .*****.*** *************   .

64. spacer 4.10|1158938|32|NZ_CP040067|PILER-CR,CRT matches to NC_011987 (Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence) position: , mismatch: 10, identity: 0.688

ttgcccgcgcaattccgggagcatccgcaatt	CRISPR spacer
gctaccgcgcaattcgaggagcatccgctggg	Protospacer
 .  *********** .*********** .

65. spacer 4.11|1158999|32|NZ_CP040067|PILER-CR,CRT matches to CP011075 (Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

acggacaaaatatatattgatttgcgaattat	CRISPR spacer
tgaggcaaaatatagattgatttccgaaaata	Protospacer
  .*.********* ******** ****

66. spacer 4.11|1158999|32|NZ_CP040067|PILER-CR,CRT matches to GU075905 (Prochlorococcus phage P-HM2, complete genome) position: , mismatch: 10, identity: 0.688

acggacaaaatatatattgatttgcgaattat	CRISPR spacer
acggaaaaattatatattgattttacttctgg	Protospacer
***** *** *************     .*.

67. spacer 4.13|1159121|32|NZ_CP040067|PILER-CR,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 10, identity: 0.688

cccgtcaccgacgcgcagtggcgctaccgtga	CRISPR spacer
gacatcaccgacgcccagtggcgcgacgtccc	Protospacer
  *.********** ********* **  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

283254 : 323816

Bacillus_phage(33.33%)

transposase,integrase

attL 271707:271721|attR 298273:298287

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
271707:271721	attL	NA	NA	NA	NA
WP_000090707.1\|283254_284097_+\|transposase	transposase	NA	NA	NA	NA
WP_085947771.1\|284567_285729_+\|transposase	IS3-like element IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.1e-51	40.6
WP_099975594.1\|285848_287468_+\|integrase	integrase core domain protein	NA	NA	NA	NA
WP_001049180.1\|287467_288916_+	ATP-binding protein	NA	NA	NA	NA
WP_001324699.1\|288956_290513_+\|transposase	transposase	NA	NA	NA	NA
WP_000262420.1\|290524_291451_+	hypothetical protein	NA	NA	NA	NA
WP_001097216.1\|291803_292103_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_089455121.1\|292666_294316_+	AAA family ATPase	NA	NA	NA	NA
WP_000080195.1\|294302_295916_-\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.0e-182	63.6
WP_000624722.1\|295946_296297_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_000422741.1\|296293_296719_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_000647571.1\|297201_297552_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	8.1e-16	61.4
WP_000790485.1\|297698_298130_-	silver-binding protein SilE	NA	NA	NA	NA
WP_001377740.1\|298374_299856_-	copper/silver sensor histidine kinase SilS	W8CYF6	Bacillus_phage	1.8e-27	30.1
298273:298287	attR	NA	NA	NA	NA
WP_000697968.1\|299848_300529_-	copper/silver response regulator transcription factor SilR	W8CYM9	Bacillus_phage	2.7e-31	36.0
WP_000475506.1\|300718_302104_+	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	NA	NA	NA	NA
WP_001246155.1\|302131_302485_+	cation efflux system protein CusF	NA	NA	NA	NA
WP_000157620.1\|302598_303891_+	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA	NA	NA
WP_000574029.1\|303901_307048_+	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	NA	NA	NA	NA
WP_000758224.1\|307134_307575_+	hypothetical protein	NA	NA	NA	NA
WP_001353604.1\|307701_310149_+	Ag(+)-translocating P-type ATPase SilP	A0A218MNH6	uncultured_virus	1.3e-83	35.3
WP_000843494.1\|310189_310387_+	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_000287501.1\|310420_311158_-	peptidoglycan DD-metalloendopeptidase family protein	A8ATH6	Listeria_phage	1.0e-12	41.0
WP_001023257.1\|311446_311896_-	copper resistance protein	NA	NA	NA	NA
WP_001378117.1\|312130_313948_+	multicopper oxidase PcoA	NA	NA	NA	NA
WP_001242438.1\|313947_314844_+	copper resistance outer membrane transporter PcoB	NA	NA	NA	NA
WP_000025662.1\|314883_315264_+	copper resistance system metallochaperone PcoC	NA	NA	NA	NA
WP_000998778.1\|315268_316198_+	copper resistance inner membrane protein PcoD	NA	NA	NA	NA
WP_001188930.1\|316252_316933_+	copper response regulator transcription factor PcoR	W8CYM9	Bacillus_phage	8.7e-30	34.4
WP_001211180.1\|316929_318330_+	copper resistance membrane spanning protein PcoS	W8CYF6	Bacillus_phage	3.2e-18	26.6
WP_000723069.1\|318547_318982_+	copper resistance system metallochaperone PcoE	NA	NA	NA	NA
WP_001028905.1\|319640_320693_-	DUF2776 domain-containing protein	NA	NA	NA	NA
WP_085947917.1\|322542_323816_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.4e-177	99.3

DBSCAN-SWA_2

1166911 : 1174852

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001374723.1\|1166911_1167673_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.0e-59	48.0
WP_000254708.1\|1167666_1168293_+	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.7e-36	49.7
WP_001272592.1\|1168432_1169572_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	1.7e-06	35.6
WP_000081550.1\|1169634_1170627_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.1e-32	37.6
WP_000104456.1\|1170720_1172085_-	GntP family transporter	NA	NA	NA	NA
WP_001136918.1\|1172173_1172950_-	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_001278994.1\|1172954_1173593_-	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0
WP_000590392.1\|1173589_1174852_-	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	1.3e-135	61.4

DBSCAN-SWA_3

1790675 : 1800117

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569361.1\|1790675_1791602_+	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	1.7e-23	30.8
WP_000783120.1\|1791606_1792338_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|1792318_1792426_-	protein YohO	NA	NA	NA	NA
WP_001240401.1\|1792485_1793217_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
WP_001295431.1\|1793438_1795124_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_000598641.1\|1795120_1795840_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295430.1\|1795886_1796357_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_001295429.1\|1796397_1796859_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
WP_089455097.1\|1796983_1798984_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.1
WP_001292773.1\|1798980_1800117_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	3.2e-162	97.4

DBSCAN-SWA_4

2315755 : 2339536

Enterobacteria_phage(26.32%)

tail,lysis,integrase

attL 2311998:2312012|attR 2335776:2335790

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2311998:2312012	attL	NA	NA	NA	NA
WP_000598292.1\|2315755_2316082_+	YnfA family protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6
WP_001295394.1\|2316287_2317502_+	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
WP_000836058.1\|2317513_2318533_+	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	4.3e-17	26.2
WP_001360138.1\|2318590_2318701_+	hypothetical protein	NA	NA	NA	NA
WP_000877001.1\|2318720_2320001_-\|integrase	site-specific integrase	B6DZ48	Enterobacteria_phage	6.6e-156	62.3
WP_001296941.1\|2320035_2320272_-	excisionase family protein	S4TND0	Salmonella_phage	6.1e-15	50.7
WP_001372999.1\|2320359_2322831_-	exonuclease	K7PLW7	Enterobacteria_phage	6.1e-57	59.8
WP_001083281.1\|2322924_2323116_-\|lysis	lysis protein YdfD	NA	NA	NA	NA
WP_000854559.1\|2323112_2323301_-	cell division inhibition protein DicB	NA	NA	NA	NA
WP_072163420.1\|2323384_2323627_+	hypothetical protein	NA	NA	NA	NA
WP_000054501.1\|2323607_2324573_+	hypothetical protein	U5P0A0	Shigella_phage	9.7e-59	63.9
WP_001373616.1\|2324613_2325036_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.0e-61	85.6
WP_001678528.1\|2325165_2326110_-	hypothetical protein	NA	NA	NA	NA
WP_001678529.1\|2326657_2328007_-	hypothetical protein	A0A1W6JNS5	Morganella_phage	5.7e-259	98.0
WP_023147793.1\|2328324_2328927_+\|integrase	tyrosine-type recombinase/integrase	A0A1V0E036	Clostridioides_phage	3.7e-08	31.2
WP_023147794.1\|2329286_2330267_+	hypothetical protein	NA	NA	NA	NA
WP_032181055.1\|2330471_2330780_+	hypothetical protein	NA	NA	NA	NA
WP_122083109.1\|2330786_2330894_-	hypothetical protein	Q7Y2Q9	Escherichia_phage	3.8e-09	100.0
WP_001013632.1\|2330938_2331151_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	2.0e-25	95.4
WP_000980999.1\|2331366_2331618_+	hypothetical protein	NA	NA	NA	NA
WP_023147795.1\|2331684_2331963_+	hypothetical protein	I6PCV7	Cronobacter_phage	7.4e-12	48.4
WP_001373319.1\|2331964_2333014_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	4.2e-108	54.3
WP_000904112.1\|2333026_2333401_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	8.4e-35	62.7
WP_000762889.1\|2333397_2334219_+	antitermination protein	K7P7B9	Enterobacteria_phage	2.7e-78	59.0
WP_001373320.1\|2334964_2337127_+	DUF1983 domain-containing protein	A0A291AWT4	Escherichia_phage	0.0e+00	96.6
2335776:2335790	attR	NA	NA	NA	NA
WP_032181053.1\|2337958_2339356_+	chaperone of endosialidase	K7PGT9	Enterobacteria_phage	1.4e-204	85.2
WP_072163404.1\|2339410_2339536_+\|tail	phage tail protein	K7PMH7	Enterobacteria_phage	1.5e-12	82.5

DBSCAN-SWA_5

2740949 : 2751727

Enterobacteria_phage(40.0%)

integrase

attL 2738922:2738945|attR 2750430:2750453

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2738922:2738945	attL	NA	NA	NA	NA
WP_000379042.1\|2740949_2742905_-	AAA domain-containing protein	K4I1H4	Acidithiobacillus_phage	7.5e-26	28.6
WP_001753331.1\|2745269_2745809_-	hypothetical protein	M9NZI6	Enterobacteria_phage	7.5e-61	65.6
WP_072163463.1\|2745991_2746303_+	recombinase	A0A0N7KZJ3	Stx2-converting_phage	2.4e-43	100.0
WP_001372461.1\|2746299_2746980_+	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	5.1e-131	98.7
WP_000149533.1\|2746976_2747135_+	DUF1317 family protein	M1FJ61	Enterobacteria_phage	6.4e-21	88.5
WP_001678641.1\|2747131_2748196_+	DGQHR domain-containing protein	T1SBJ4	Salmonella_phage	1.7e-133	64.8
WP_001678640.1\|2748349_2748568_+	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	3.2e-34	94.4
WP_000488406.1\|2748615_2748855_+	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	3.9e-38	94.9
WP_000088653.1\|2748994_2749231_+	excisionase	NA	NA	NA	NA
WP_000741339.1\|2749220_2750363_+\|integrase	tyrosine-type recombinase/integrase	O21929	Phage_21	8.1e-206	99.7
WP_000444487.1\|2750476_2751727_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
2750430:2750453	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3077179 : 3085949

Salmonella_phage(90.0%)

integrase

attL 3076849:3076862|attR 3085991:3086004

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3076849:3076862	attL	NA	NA	NA	NA
WP_001376441.1\|3077179_3077368_-	hypothetical protein	A0A1S6L006	Salmonella_phage	2.0e-24	95.2
WP_089455086.1\|3077526_3079920_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	93.5
WP_001544405.1\|3079916_3080774_-	DNA adenine methylase	E5G6L8	Salmonella_phage	9.5e-159	95.8
WP_000752610.1\|3080770_3080998_-	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	7.8e-36	98.7
WP_001244224.1\|3080997_3081231_-	DUF2732 family protein	E5G6L6	Salmonella_phage	1.9e-32	97.4
WP_000996717.1\|3081298_3081640_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	1.7e-55	98.2
WP_000956192.1\|3081757_3082054_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	1.9e-21	88.5
WP_000460892.1\|3082061_3082571_-	phage regulatory CII family protein	E5G6L3	Salmonella_phage	1.3e-86	98.2
WP_000188448.1\|3082603_3082825_-	hypothetical protein	NA	NA	NA	NA
WP_001680871.1\|3082970_3083849_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.7e-30	39.4
WP_001678408.1\|3083860_3084805_+	hypothetical protein	NA	NA	NA	NA
WP_001372563.1\|3084896_3085949_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	1.4e-106	57.0
3085991:3086004	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3165532 : 3192736

Enterobacteria_phage(47.06%)

tail,integrase,capsid,lysis

attL 3167448:3167462|attR 3192810:3192824

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001356070.1\|3165532_3166822_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	3.4e-19	27.1
WP_000767389.1\|3166880_3167357_+	kinase inhibitor	NA	NA	NA	NA
3167448:3167462	attL	NA	NA	NA	NA
WP_001753290.1\|3168102_3169434_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	1.4e-20	37.1
WP_072163407.1\|3169507_3169684_-\|tail	phage tail protein	K7PMH7	Enterobacteria_phage	9.4e-21	84.5
WP_000239881.1\|3169833_3170502_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_072035100.1\|3170446_3170584_-\|capsid	nucleocapsid protein	NA	NA	NA	NA
WP_001372490.1\|3171392_3171953_-	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	4.9e-87	98.8
WP_000105084.1\|3172341_3172575_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	7.3e-21	94.4
WP_000079508.1\|3172631_3173042_+	DUF1398 family protein	C6ZCX4	Enterobacteria_phage	1.3e-52	76.3
WP_001139678.1\|3173393_3173546_-	hypothetical protein	K7PKL2	Enterobacteria_phage	3.1e-20	96.0
WP_001228702.1\|3173574_3173781_-	hypothetical protein	H6WRZ6	Salmonella_phage	5.3e-31	98.5
WP_001372488.1\|3173997_3174495_-	lysozyme	A0A1B5FP97	Escherichia_phage	1.6e-89	97.0
WP_000839582.1\|3174494_3174710_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.2e-33	98.6
WP_000592543.1\|3175979_3176939_-	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA
WP_000780581.1\|3177131_3177656_+	lipocalin family protein	A0A1W6JNX6	Morganella_phage	1.1e-48	54.1
WP_001204777.1\|3177811_3178189_-	antitermination protein	Q777W5	Enterobacteria_phage	7.3e-55	84.2
WP_000971068.1\|3178274_3178415_-	YlcG family protein	K7PHH3	Enterobacteria_phage	5.5e-08	67.4
WP_001372483.1\|3178411_3178774_-	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	1.5e-60	97.4
WP_001372487.1\|3178770_3179061_-	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	4.8e-46	91.7
WP_000224914.1\|3179053_3179224_-	hypothetical protein	K7P7K0	Enterobacteria_phage	2.4e-13	69.8
WP_001372486.1\|3179223_3179679_-	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	5.9e-59	66.2
WP_072157016.1\|3179675_3179777_-	hypothetical protein	NA	NA	NA	NA
WP_000825400.1\|3179869_3180322_-	hypothetical protein	NA	NA	NA	NA
WP_000720581.1\|3180318_3180879_-	hypothetical protein	NA	NA	NA	NA
WP_001403556.1\|3181135_3181327_+	hypothetical protein	NA	NA	NA	NA
WP_000145917.1\|3181363_3181657_-	protein ren	A0A0N6WES4	Escherichia_phage	1.1e-42	95.7
WP_001372464.1\|3181653_3182355_-	replication P family protein	K7P6G2	Enterobacteria_phage	3.8e-129	99.6
WP_001415152.1\|3182351_3183281_-	replication protein	A0A0M5M7Y1	Salmonella_phage	1.2e-109	63.4
WP_001182899.1\|3183367_3183907_-	hypothetical protein	M9NZI6	Enterobacteria_phage	2.0e-61	66.1
WP_001067458.1\|3183976_3184207_-	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
WP_000858975.1\|3184311_3185001_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	2.8e-92	75.0
WP_000389051.1\|3185123_3185873_+	hypothetical protein	NA	NA	NA	NA
WP_000210934.1\|3185869_3186697_+	DUF3037 domain-containing protein	NA	NA	NA	NA
WP_000233576.1\|3187205_3187412_+	phage encoded cell division inhibitor protein	K7P6H3	Enterobacteria_phage	3.2e-28	85.3
WP_000995439.1\|3187487_3187784_+	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	1.6e-49	100.0
WP_000100847.1\|3187789_3188575_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_001372450.1\|3188571_3189252_+	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	3.0e-131	98.7
WP_072126246.1\|3189248_3189431_+	DUF1317 domain-containing protein	A0A0N7CHV0	Escherichia_phage	2.2e-28	98.3
WP_023148020.1\|3189403_3189595_+	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	2.8e-26	98.4
WP_001395510.1\|3189605_3189887_+	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	2.5e-47	100.0
WP_000763365.1\|3189985_3190207_+	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	1.4e-34	97.3
WP_000120065.1\|3190417_3191020_-	hypothetical protein	NA	NA	NA	NA
WP_071525073.1\|3191144_3191330_-	hypothetical protein	NA	NA	NA	NA
WP_000545745.1\|3191262_3191430_+	hypothetical protein	A5VWB7	Enterobacteria_phage	2.9e-27	98.2
WP_001303849.1\|3191469_3191688_+	excisionase	Q77WA4	Escherichia_phage	3.7e-35	100.0
WP_000533646.1\|3191665_3192736_+\|integrase	tyrosine-type recombinase/integrase	Q9MCR4	Enterobacteria_phage	1.9e-201	99.7
3192810:3192824	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3920667 : 4021739

102

Escherichia_phage(33.33%)

tRNA,portal,protease,integrase,terminase,tail,lysis

attL 3995400:3995414|attR 4022524:4022538

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001286857.1\|3920667_3923484_-\|tRNA	isoleucine--tRNA ligase	A0A2K9L260	Tupanvirus	2.7e-77	26.1
WP_000767329.1\|3923526_3924468_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA
WP_001295417.1\|3924475_3924694_-	DUF2575 family protein	NA	NA	NA	NA
WP_001274021.1\|3924796_3925060_+	30S ribosomal protein S20	NA	NA	NA	NA
WP_000062888.1\|3929551_3930457_-	transcriptional activator NhaR	NA	NA	NA	NA
WP_000681360.1\|3930516_3931683_-	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	7.5e-90	50.3
WP_000935262.1\|3932211_3932421_+	type I toxin-antitoxin system toxin MokC	A0A0P0ZAX5	Stx2-converting_phage	8.0e-19	73.9
WP_001118464.1\|3932524_3933655_-	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	4.6e-28	34.6
WP_000516131.1\|3933743_3935660_-	molecular chaperone DnaK	A0A0N9QXN8	Chrysochromulina_ericina_virus	9.0e-149	51.1
WP_000843559.1\|3936036_3936441_+	DUF2541 family protein	NA	NA	NA	NA
WP_001102383.1\|3936466_3937180_+	acidic protein MsyB	NA	NA	NA	NA
WP_000528538.1\|3937328_3937895_+	acetate uptake transporter	NA	NA	NA	NA
WP_001094682.1\|3937929_3938517_-	molybdopterin adenylyltransferase	NA	NA	NA	NA
WP_000130185.1\|3938631_3939585_-	transaldolase	A0A127KNC6	Cyanophage	1.7e-10	31.5
WP_001112597.1\|3939863_3941294_+	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_000906183.1\|3941363_3942140_+	peroxide stress protein YaaA	NA	NA	NA	NA
WP_000738723.1\|3942292_3942589_-	DUF2502 domain-containing protein	NA	NA	NA	NA
WP_000781063.1\|3942802_3944089_-	threonine synthase	NA	NA	NA	NA
WP_000241660.1\|3944089_3945022_-	homoserine kinase	NA	NA	NA	NA
WP_001753208.1\|3945023_3947486_-	bifunctional aspartate kinase/homoserine dehydrogenase I	NA	NA	NA	NA
WP_001386572.1\|3947566_3947632_-	thr operon leader peptide	NA	NA	NA	NA
WP_001223186.1\|3947845_3948532_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_001303782.1\|3948931_3949072_-	hypothetical protein	NA	NA	NA	NA
WP_001194358.1\|3949167_3949884_+	two-component system response regulator ArcA	NA	NA	NA	NA
WP_000920307.1\|3949942_3951295_-	cell envelope integrity protein CreD	NA	NA	NA	NA
WP_001188666.1\|3952775_3953465_-	two-component system response regulator CreB	W8CYM9	Bacillus_phage	2.0e-29	35.3
WP_000875487.1\|3953477_3953951_-	protein CreA	NA	NA	NA	NA
WP_000371666.1\|3954161_3955031_+	MDR efflux pump AcrAB transcriptional activator RobA	NA	NA	NA	NA
WP_000942344.1\|3955027_3955675_-	2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB	NA	NA	NA	NA
WP_001346116.1\|3955726_3956239_+	non-canonical purine NTP phosphatase	NA	NA	NA	NA
WP_000068679.1\|3956281_3956608_-	trp operon repressor	NA	NA	NA	NA
WP_000409451.1\|3956697_3958635_-	murein transglycosylase	A0A1P8CWQ1	Bacillus_phage	4.0e-11	34.8
WP_000046749.1\|3958845_3960513_+	energy-dependent translational throttle protein EttA	A0A1V0SKJ1	Klosneuvirus	3.7e-42	26.4
WP_000093810.1\|3960819_3962052_-	multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	A0A0C5K935	Enterococcus_phage	1.6e-82	42.6
WP_001029698.1\|3962072_3963455_-	DNA repair protein RadA	NA	NA	NA	NA
WP_001132956.1\|3963503_3964472_-	phosphoserine phosphatase	NA	NA	NA	NA
WP_000124615.1\|3964577_3965222_+	YtjB family periplasmic protein	NA	NA	NA	NA
WP_139972904.1\|3965249_3966266_+	lipoate--protein ligase LplA	NA	NA	NA	NA
WP_000224877.1\|3966721_3967441_-	purine-nucleoside phosphorylase	NA	NA	NA	NA
WP_000816471.1\|3967520_3968744_-	phosphopentomutase	NA	NA	NA	NA
WP_000477811.1\|3968795_3970118_-	thymidine phosphorylase	A0A0H3UZD4	Geobacillus_virus	2.3e-79	39.8
WP_001295412.1\|3970244_3971024_-	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_001143253.1\|3971281_3972832_+	YjjI family glycine radical enzyme	NA	NA	NA	NA
WP_001088379.1\|3972803_3973667_+	YjjW family glycine radical enzyme activase	NA	NA	NA	NA
WP_000563058.1\|3973981_3974764_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_001299799.1\|3974760_3975834_-	patatin family protein	NA	NA	NA	NA
WP_000490275.1\|3975955_3976117_-	DUF1328 domain-containing protein	A0A0N7CBR2	Salmonella_phage	1.8e-10	64.2
WP_001295748.1\|3976243_3976849_-	molecular chaperone OsmY	NA	NA	NA	NA
WP_000202566.1\|3977241_3978828_-	peptide chain release factor 3	D0R0F5	Streptococcus_phage	5.3e-30	24.9
WP_001217539.1\|3979047_3979296_+	DinI family protein	A5LH55	Enterobacteria_phage	1.1e-38	100.0
WP_001026781.1\|3979612_3980158_+	serine acetyltransferase	NA	NA	NA	NA
WP_024199269.1\|3980168_3980741_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	7.4e-91	84.6
WP_139972905.1\|3980740_3984139_-	short-chain fatty acid transporter	X2KTY7	Enterobacteria_phage	1.8e-11	35.5
WP_001233090.1\|3984203_3984803_-	Ail/Lom family protein	A5LH44	Enterobacteria_phage	8.2e-109	97.5
WP_139972906.1\|3984873_3988371_-	host specificity protein J	A5LH43	Enterobacteria_phage	0.0e+00	97.3
WP_000090895.1\|3988431_3989064_-\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	5.5e-95	89.5
WP_139972907.1\|3989000_3989744_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	4.5e-149	98.0
WP_001152385.1\|3989749_3990448_-\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	6.0e-135	100.0
WP_032183763.1\|3990457_3990787_-\|tail	phage tail protein	A0A291AWW9	Escherichia_phage	8.6e-60	99.1
WP_139972908.1\|3990786_3993861_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	95.7
WP_001161009.1\|3993832_3994162_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
WP_139972921.1\|3994170_3994557_-\|tail	phage minor tail protein G	A0A291AWW5	Escherichia_phage	4.0e-64	98.4
WP_000211109.1\|3994617_3995361_-\|tail	tail protein	A0A291AWU6	Escherichia_phage	7.8e-133	100.0
WP_001079398.1\|3995372_3995774_-\|tail	tail protein	A0A291AWY2	Escherichia_phage	8.3e-73	100.0
3995400:3995414	attL	NA	NA	NA	NA
WP_000677108.1\|3995770_3996349_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	7.2e-102	99.5
WP_001283153.1\|3996360_3996636_-	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	2.3e-45	100.0
WP_001097050.1\|3996628_3996952_-	DUF2190 family protein	A0A291AWX2	Escherichia_phage	8.5e-52	100.0
WP_077794792.1\|3997038_3999066_-\|protease	Clp protease ClpP	A0A291AWT6	Escherichia_phage	0.0e+00	99.5
WP_000985939.1\|3999010_4000519_-\|portal	phage portal protein	K7PJP3	Enterobacteria_phage	1.0e-288	99.4
WP_001072973.1\|4000518_4000731_-	hypothetical protein	A5LH28	Enterobacteria_phage	7.1e-31	98.6
WP_024232579.1\|4000727_4002830_-\|terminase	phage terminase large subunit family protein	A0A291AWY5	Escherichia_phage	0.0e+00	99.6
WP_000373425.1\|4002829_4003324_-	DUF1441 family protein	A0A291AWV8	Escherichia_phage	9.9e-84	100.0
WP_001447005.1\|4003482_4003683_-	hypothetical protein	K7PJR7	Enterobacteria_phage	1.4e-33	98.5
WP_001139675.1\|4003999_4004152_-	hypothetical protein	A0A291AWZ2	Escherichia_phage	1.2e-21	100.0
WP_139972909.1\|4004139_4004607_-\|lysis	lysis protein	A0A291AWW3	Escherichia_phage	2.9e-77	99.4
WP_001135250.1\|4004603_4005101_-	lysozyme	A0A291AWW2	Escherichia_phage	4.5e-92	100.0
WP_000839596.1\|4005100_4005316_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	9.0e-34	100.0
WP_000799656.1\|4005383_4006436_-	site-specific DNA-methyltransferase	A5LH81	Enterobacteria_phage	2.7e-208	100.0
WP_021537120.1\|4006585_4006780_-	hypothetical protein	Q8SBE3	Shigella_phage	5.1e-28	98.4
WP_032180888.1\|4007025_4008192_+	nucleoid-associated protein	A0A291AUQ0	Sinorhizobium_phage	9.7e-13	25.3
WP_016159279.1\|4008188_4009415_+	hypothetical protein	NA	NA	NA	NA
WP_016159280.1\|4009407_4009752_-	hypothetical protein	A0A0P0ZCW0	Stx2-converting_phage	3.3e-54	84.1
WP_139972910.1\|4009769_4010759_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.1e-194	99.1
WP_069354058.1\|4010766_4011609_-	KilA-N domain-containing protein	S5MC03	Escherichia_phage	2.0e-140	92.2
WP_139972911.1\|4011628_4012018_-	RusA family crossover junction endodeoxyribonuclease	A5LH74	Enterobacteria_phage	3.3e-66	96.9
WP_000210154.1\|4012014_4012341_-	LexA family transcriptional regulator	A0A0N7KZF7	Stx2-converting_phage	2.7e-53	99.1
WP_139972912.1\|4012337_4012667_-	hypothetical protein	A0A291AWV6	Escherichia_phage	4.8e-50	95.1
WP_042028809.1\|4012669_4013611_-	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	2.9e-153	99.7
WP_001250272.1\|4013600_4013780_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
WP_139972913.1\|4013955_4014513_-	protein YmfL	S5FXP0	Shigella_phage	3.3e-96	94.6
WP_001191669.1\|4014505_4014766_-	helix-turn-helix transcriptional regulator	K7PJQ8	Enterobacteria_phage	5.4e-41	100.0
WP_001347307.1\|4014737_4014890_-	hypothetical protein	NA	NA	NA	NA
WP_001311077.1\|4014863_4015556_+	helix-turn-helix transcriptional regulator	S5FUZ3	Shigella_phage	2.9e-121	96.5
WP_139972914.1\|4015611_4015890_+	hypothetical protein	A0A291AWY6	Escherichia_phage	1.9e-12	94.9
WP_071587686.1\|4016043_4016244_+	hypothetical protein	NA	NA	NA	NA
WP_000135680.1\|4016258_4016621_+	hypothetical protein	Q8SBF8	Shigella_phage	8.6e-61	100.0
WP_001530589.1\|4016686_4017511_+	DUF2303 family protein	U5P439	Shigella_phage	1.3e-149	99.6
WP_112891064.1\|4017638_4018175_+	5'-deoxynucleotidase	S5MW55	Escherichia_phage	4.5e-98	98.3
WP_001061359.1\|4018209_4018404_+	helix-turn-helix domain-containing protein	A5LH59	Enterobacteria_phage	4.9e-31	95.3
WP_139972915.1\|4018579_4019413_+	restriction endonuclease	NA	NA	NA	NA
WP_139972916.1\|4019503_4020445_+	hypothetical protein	NA	NA	NA	NA
WP_139972917.1\|4020515_4021739_-\|integrase	site-specific integrase	A0A291AWU1	Escherichia_phage	2.0e-234	97.8
4022524:4022538	attR	NA	NA	NA	NA

DBSCAN-SWA_9

4110044 : 4116603

uncultured_Caudovirales_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000684856.1\|4110044_4111001_+	Fe(3+) dicitrate ABC transporter permease subunit FecD	A0A2H4IY97	uncultured_Caudovirales_phage	1.1e-17	26.1
WP_000175457.1\|4111001_4111769_+	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	G3M9Y6	Bacillus_virus	6.4e-13	24.8
WP_000177060.1\|4112326_4112584_-	hypothetical protein	NA	NA	NA	NA
WP_001254876.1\|4113635_4114787_+\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.6e-42	36.0
WP_000747102.1\|4114706_4115057_-\|transposase	transposase	Q716C1	Shigella_phage	8.9e-39	97.7
WP_000227281.1\|4115157_4115730_+	hypothetical protein	Q858R9	Enterobacteria_phage	2.2e-71	69.0
WP_000594911.1\|4115778_4116603_-	hypothetical protein	L7TR00	Rhizobium_phage	3.0e-16	35.5

DBSCAN-SWA_10

4367133 : 4379621

Shigella_phage(40.0%)

integrase

attL 4357732:4357745|attR 4375577:4375590

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4357732:4357745	attL	NA	NA	NA	NA
WP_000332259.1\|4367133_4368231_+\|integrase	site-specific integrase	S5MDN5	Escherichia_phage	1.8e-210	99.2
WP_001217553.1\|4368291_4368540_+	DinI family protein	K7PLW4	Enterobacteria_phage	1.8e-38	100.0
WP_000543834.1\|4368762_4369314_+	SLATT domain-containing protein	NA	NA	NA	NA
WP_001678535.1\|4369291_4370662_+	reverse transcriptase	NA	NA	NA	NA
WP_001753753.1\|4371099_4373253_-	chaperone of endosialidase	K7PGT9	Enterobacteria_phage	1.4e-211	53.6
WP_000649477.1\|4374383_4374584_-	transcriptional regulator	U5P445	Shigella_phage	7.9e-32	100.0
WP_000859462.1\|4374674_4375349_+	LexA family transcriptional repressor	Q8SBF6	Shigella_phage	1.2e-132	100.0
WP_071587686.1\|4375800_4376001_+	hypothetical protein	NA	NA	NA	NA
4375577:4375590	attR	NA	NA	NA	NA
WP_000135682.1\|4376015_4376378_+	hypothetical protein	U5P4J6	Shigella_phage	3.3e-60	100.0
WP_001753751.1\|4376443_4377268_+	DUF2303 family protein	U5P439	Shigella_phage	6.6e-149	99.3
WP_000610754.1\|4377454_4378237_+	hypothetical protein	NA	NA	NA	NA
WP_001093912.1\|4378273_4378543_+	hypothetical protein	S5MQM5	Escherichia_phage	2.5e-41	97.8
WP_000019186.1\|4378576_4379125_-	hypothetical protein	S5M7T3	Escherichia_phage	2.7e-82	89.6
WP_000287252.1\|4379147_4379621_-	SocA family protein	K4NZT7	Burkholderia_phage	2.4e-18	31.8

Anti-CRISPR protein detection

Acr_ID: NZ_CP040067.1|WP_001678640.1|2748349_2748568_+|TraR/DksA-family-transcriptional-regulator

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP040067.1|WP_001678640.1|2748349_2748568_+|TraR/DksA-family-transcriptional-regulator

2748349_2748568_+

72 aa aa

2740949-2751727

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP040067_8	Orphan	8.2\|3182888\|26\|NZ_CP040067\|PILER-CR	3182888-3182913	26	2744785-2744810	0

1. spacer 8.2|3182888|26|NZ_CP040067|PILER-CR matches to NZ_CP040067 position: 2744785-2744810, mismatch: 0

atttacctctttcaggtaaactttat	CRISPR spacer
atttacctctttcaggtaaactttat	Protospacer
**************************

2. NZ_CP040069

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 23434

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001076427.1\|0_861_+	RepB family plasmid replication initiator protein	Q71TL8	Escherichia_phage	4.7e-158	100.0
WP_000817632.1\|1260_2466_+	ParA family protein	Q1MVJ3	Enterobacteria_phage	2.0e-226	100.0
WP_000725191.1\|2462_3428_+	ParB/RepB/Spo0J family partition protein	Q1MVJ4	Enterobacteria_phage	1.7e-167	99.4
WP_000067708.1\|3694_5401_+	hypothetical protein	Q71TM1	Escherichia_phage	0.0e+00	99.8
WP_000085145.1\|5461_7051_+	hypothetical protein	A0A077SLN8	Escherichia_phage	2.5e-306	100.0
WP_000041761.1\|7060_7876_+	hypothetical protein	A0A1B0V835	Salmonella_phage	9.8e-113	99.3
WP_001345490.1\|7988_8207_-	hypothetical protein	NA	NA	NA	NA
WP_001345489.1\|8262_8493_+	hypothetical protein	Q1MVJ8	Enterobacteria_phage	3.0e-35	98.7
WP_000509939.1\|8504_9014_+	hypothetical protein	Q1MVJ9	Enterobacteria_phage	1.3e-91	100.0
WP_001352007.1\|9130_9286_-	type I toxin-antitoxin system toxin HokD	A0A1I9LJU7	Stx_converting_phage	4.0e-15	90.2
WP_024192401.1\|9620_10466_-	hypothetical protein	Q1MVK3	Enterobacteria_phage	5.5e-151	98.6
WP_001187875.1\|10495_11296_-	protein kilA	Q1MVK4	Enterobacteria_phage	1.9e-148	100.0
WP_111968254.1\|11459_12503_-	phage antirepressor Ant	Q71TN2	Escherichia_phage	9.2e-172	93.1
WP_000245712.1\|12499_12721_-	host cell division inhibitor Icd-like protein	A0A077SLM6	Escherichia_phage	1.3e-38	100.0
WP_033558660.1\|13121_13796_+	hypothetical protein	Q71TC4	Escherichia_phage	7.5e-18	92.0
WP_000846124.1\|14064_14334_+	hypothetical protein	NA	NA	NA	NA
WP_000188924.1\|14392_14959_+	hypothetical protein	Q1MVL0	Enterobacteria_phage	6.6e-100	100.0
WP_000523980.1\|14969_15581_+	hypothetical protein	Q71TN8	Escherichia_phage	2.9e-109	99.5
WP_139527469.1\|15595_16477_+	morphogenetic protein	A0A1B0VBL3	Salmonella_phage	2.0e-172	98.6
WP_139972928.1\|16558_20299_+	transglycosylase SLT domain-containing protein	Q1MVL3	Enterobacteria_phage	0.0e+00	86.8
WP_000002800.1\|20298_20655_+	hypothetical protein	Q71TP1	Escherichia_phage	1.0e-61	100.0
WP_029487598.1\|20651_22085_+	bleomycin hydrolase	Q71TP2	Escherichia_phage	3.4e-270	99.4
WP_001561131.1\|22084_22921_+	hypothetical protein	A0A077SLH5	Escherichia_phage	1.5e-153	99.6
WP_029487597.1\|22999_23434_+	hypothetical protein	Q71TD4	Escherichia_phage	3.7e-74	98.6

DBSCAN-SWA_2

28170 : 97265

Escherichia_phage(66.25%)

transposase,holin,portal,integrase

attL 40353:40369|attR 97239:97255

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000332809.1\|28170_28452_+	hypothetical protein	Q71TD9	Escherichia_phage	8.7e-45	97.8
WP_000887652.1\|28519_28849_+\|holin	holin	Q37876	Escherichia_phage	1.3e-52	100.0
WP_000580776.1\|28845_29289_+	hypothetical protein	A0A077SK09	Escherichia_phage	1.3e-82	100.0
WP_000164724.1\|29275_29878_+	hypothetical protein	Q1MVM6	Enterobacteria_phage	1.6e-99	99.5
WP_139972929.1\|29879_31799_+	hypothetical protein	A0A1B0V7H1	Salmonella_phage	0.0e+00	98.4
WP_096935682.1\|31795_32161_+	ddrA	Q1MVM8	Enterobacteria_phage	1.5e-44	96.7
WP_100728218.1\|32173_35161_+	hypothetical protein	A0A1B0VFX4	Salmonella_phage	0.0e+00	99.0
WP_001165936.1\|35150_35459_+	hypothetical protein	O21974	Escherichia_phage	5.4e-48	97.1
WP_046644916.1\|35489_36284_-	hypothetical protein	Q71TF1	Escherichia_phage	1.5e-142	95.8
WP_042032564.1\|36486_36975_-	single-stranded DNA-binding protein	A0A1B0VAF5	Salmonella_phage	1.9e-87	99.4
WP_042032566.1\|37144_37702_+	lysozyme	Q71TF3	Escherichia_phage	1.4e-105	98.9
WP_001369289.1\|37837_38014_+	hypothetical protein	Q71TR5	Escherichia_phage	7.9e-28	96.6
WP_029396176.1\|37993_39013_-	hypothetical protein	Q71TR6	Escherichia_phage	2.7e-184	99.4
WP_139972930.1\|39005_40715_-\|portal	phage portal protein	A0A077SL38	Escherichia_phage	0.0e+00	99.3
40353:40369	attL	NA	NA	NA	NA
WP_139972931.1\|40790_47558_+	helicase	Q1MVN7	Enterobacteria_phage	0.0e+00	98.7
WP_000224043.1\|47591_48032_+	hypothetical protein	A0A077SLF0	Escherichia_phage	1.7e-79	100.0
WP_000747846.1\|48028_48277_+	hypothetical protein	Q71TG0	Escherichia_phage	1.8e-41	100.0
WP_139972932.1\|48318_49623_-	SIR2 family protein	Q38324	Lactococcus_phage	5.8e-06	31.7
WP_001376241.1\|49679_50321_-	hypothetical protein	A0A077SK30	Escherichia_phage	1.8e-114	99.1
WP_032246987.1\|50509_51070_-	Ref family protein	Q5QBN4	Enterobacteria_phage	8.5e-100	99.5
WP_032246986.1\|51317_51629_-	hypothetical protein	Q5QBN5	Enterobacteria_phage	1.1e-45	97.1
WP_032246985.1\|51679_52711_-\|integrase	tyrosine-type recombinase/integrase	A0A077SLE7	Escherichia_phage	4.2e-193	99.1
WP_000542332.1\|52718_52940_-	hypothetical protein	A0A077SLI9	Escherichia_phage	3.4e-36	100.0
WP_001312283.1\|53351_53465_+	hypothetical protein	Q5XLQ7	Enterobacteria_phage	3.2e-14	100.0
WP_012817944.1\|53483_53579_+	hypothetical protein	Q38402	Escherichia_phage	2.8e-11	100.0
WP_000874156.1\|53544_53754_+	hypothetical protein	A0A077SK26	Escherichia_phage	1.8e-31	100.0
WP_000611664.1\|53864_54716_+	hypothetical protein	A0A077SLM8	Escherichia_phage	1.2e-158	100.0
WP_139972933.1\|54748_55075_-	phage antirepressor Ant	A0A077SLR9	Escherichia_phage	2.9e-52	100.0
WP_079390445.1\|55112_58193_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	8.2e-51	30.6
WP_011918375.1\|58216_58528_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_011787805.1\|58527_58788_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_032163774.1\|60321_61806_-	hypothetical protein	Q71T61	Escherichia_phage	2.9e-288	98.4
WP_000219616.1\|61805_62999_-	hypothetical protein	Q71T62	Escherichia_phage	5.7e-178	99.5
WP_001326849.1\|63084_63537_-	late promoter-activating protein	Q71T63	Escherichia_phage	3.0e-79	100.0
WP_139972934.1\|63625_64669_-	DUF968 domain-containing protein	A0A077SLM1	Escherichia_phage	4.1e-204	98.6
WP_000113018.1\|64696_64876_-	hypothetical protein	Q71TH5	Escherichia_phage	1.2e-23	98.3
WP_001216030.1\|64880_65261_-	type II toxin-antitoxin system death-on-curing family toxin	A0A077SK56	Escherichia_phage	1.9e-63	99.2
WP_001190712.1\|65260_65482_-	type II toxin-antitoxin system Phd/YefM family antitoxin	A0A222YXU1	Escherichia_phage	6.7e-32	100.0
WP_000506726.1\|65554_65944_-	DNA repair protein	Q1MVE7	Enterobacteria_phage	1.4e-69	99.2
WP_046644566.1\|66067_66319_-	DNA polymerase III subunit theta	Q71T70	Escherichia_phage	1.3e-36	92.8
WP_024134677.1\|66472_66670_-	hypothetical protein	Q71TI2	Escherichia_phage	7.5e-27	98.5
WP_001261544.1\|66980_67343_-	hypothetical protein	Q71TI4	Escherichia_phage	2.2e-56	100.0
WP_077787973.1\|67339_68272_-	hypothetical protein	A0A1B0VDS6	Salmonella_phage	1.2e-178	98.1
WP_000988658.1\|68253_68628_-	hypothetical protein	A0A077SL57	Escherichia_phage	3.2e-66	96.0
WP_046644560.1\|68634_68928_-	hypothetical protein	A0A077SK23	Escherichia_phage	7.0e-45	91.8
WP_000516537.1\|69106_69340_-	hypothetical protein	A0A1B0V7L5	Salmonella_phage	1.6e-36	97.4
WP_139972935.1\|69422_70640_-	DUF551 domain-containing protein	A0A1B0V865	Salmonella_phage	3.2e-107	55.7
WP_139972936.1\|70641_71352_-	ead/Ea22-like family protein	A0A0K2FJF6	Enterobacteria_phage	6.0e-58	58.1
WP_000672528.1\|71348_72083_-	hypothetical protein	A0A2I6TCG8	Escherichia_phage	1.7e-39	55.2
WP_001018057.1\|72079_72370_-	DUF4752 family protein	A0A2I6TCB0	Escherichia_phage	1.2e-36	82.3
WP_000151166.1\|72366_73233_-	ead/Ea22-like family protein	A0A0U2QW67	Escherichia_phage	1.2e-47	47.2
WP_097457805.1\|73229_73874_-	hypothetical protein	Q1MVG0	Enterobacteria_phage	2.6e-132	99.5
WP_001471568.1\|73866_74127_-	hypothetical protein	Q1MVG1	Enterobacteria_phage	5.2e-44	100.0
WP_122633930.1\|74123_74702_-	hypothetical protein	A0A077SLQ8	Escherichia_phage	3.2e-110	100.0
WP_000021759.1\|74896_75403_-	hypothetical protein	A0A077SK53	Escherichia_phage	4.5e-92	98.2
WP_075851234.1\|75475_76738_-	hypothetical protein	A0A1B0V7L1	Salmonella_phage	1.7e-233	99.3
WP_000267620.1\|76739_76958_-	hypothetical protein	Q71TI9	Escherichia_phage	3.4e-36	100.0
WP_096106394.1\|77039_77741_-	hypothetical protein	Q71TJ0	Escherichia_phage	3.3e-141	97.0
WP_106474605.1\|77737_78415_-	serine/threonine protein phosphatase	Q71TJ1	Escherichia_phage	6.6e-131	97.3
WP_000484108.1\|78411_79038_-	norphogenetic protein	Q71T82	Escherichia_phage	4.0e-122	99.0
WP_032144601.1\|78935_79598_-	hypothetical protein	A0A077SL54	Escherichia_phage	4.5e-124	100.0
WP_000095380.1\|79539_79695_-	hypothetical protein	A0A077SK20	Escherichia_phage	1.2e-19	100.0
WP_023351696.1\|79762_80341_-	VRR-NUC domain-containing protein	A0A077SLK0	Escherichia_phage	5.7e-107	99.0
WP_000840930.1\|80343_80589_-	hypothetical protein	A0A1B0VDU5	Salmonella_phage	1.5e-40	100.0
WP_000235786.1\|80735_81113_+	hypothetical protein	Q38620	Escherichia_phage	2.2e-67	100.0
WP_023351694.1\|81122_82340_+	hypothetical protein	A0A077SL53	Escherichia_phage	1.6e-223	99.3
WP_000896801.1\|82343_83072_+	hypothetical protein	A0A077SK19	Escherichia_phage	9.3e-139	100.0
WP_000602713.1\|83058_83844_+	hypothetical protein	A0A1B0V7N6	Salmonella_phage	7.2e-145	100.0
WP_001561111.1\|83845_84862_+	hypothetical protein	Q71T91	Escherichia_phage	5.0e-191	99.1
WP_000535208.1\|84854_85487_+	hypothetical protein	Q1MVH8	Enterobacteria_phage	9.0e-90	100.0
WP_139972937.1\|85532_86531_-	glycosyltransferase family 4 protein	A0A1B0VCH7	Salmonella_phage	1.9e-195	99.4
WP_001276599.1\|86530_87895_-	replicative DNA helicase	A0A077SK18	Escherichia_phage	2.1e-253	100.0
WP_077726511.1\|87885_88101_+	hypothetical protein	NA	NA	NA	NA
WP_000234829.1\|88367_88532_-	DUF3927 family protein	A0A1B0VDU8	Salmonella_phage	1.2e-17	100.0
WP_000900640.1\|88531_88957_-	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	1.8e-70	100.0
WP_001068935.1\|89148_89340_+	hypothetical protein	Q71T98	Escherichia_phage	6.0e-29	100.0
WP_139972938.1\|90515_93803_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A077SL51	Escherichia_phage	0.0e+00	98.9
WP_000472525.1\|93799_94705_-	recombination-associated protein RdgC	A0A077SK17	Escherichia_phage	8.5e-158	98.7
WP_001177860.1\|94697_94982_-	hypothetical protein	Q71TA2	Escherichia_phage	3.5e-49	100.0
WP_001369296.1\|95256_95436_+	hypothetical protein	A0A1B0V758	Salmonella_phage	6.8e-27	98.3
WP_000890193.1\|95444_96233_+	hypothetical protein	A0A1B0V830	Salmonella_phage	3.0e-106	90.1
WP_000007770.1\|96272_96695_+	hypothetical protein	Q71TL5	Escherichia_phage	1.4e-57	96.4
WP_001281121.1\|96872_97265_+	hypothetical protein	A0A1B0VBK3	Salmonella_phage	2.6e-71	99.2
97239:97255	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP040068

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

32693 : 41429

Acidithiobacillus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000268395.1\|32693_33632_+	hypothetical protein	A0A2P9HXK7	Yersinia_phage	1.5e-69	50.2
WP_000532167.1\|33631_33829_+	hypothetical protein	NA	NA	NA	NA
WP_001337764.1\|33815_34067_+	hypothetical protein	NA	NA	NA	NA
WP_001096362.1\|34066_34309_+	hypothetical protein	NA	NA	NA	NA
WP_001258027.1\|34311_34674_+	hypothetical protein	NA	NA	NA	NA
WP_000098292.1\|34666_34879_+	hypothetical protein	NA	NA	NA	NA
WP_000194038.1\|34938_35694_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	5.8e-59	51.0
WP_001274811.1\|35708_37250_-\|transposase	IS21-like element ISAs29 family transposase	K4I413	Acidithiobacillus_phage	4.4e-130	47.6
WP_001050849.1\|37494_38529_+	site-specific DNA-methyltransferase	H8ZMF1	Synechococcus_phage	1.0e-05	20.9
WP_000058870.1\|38542_38992_+	hypothetical protein	NA	NA	NA	NA
WP_000338945.1\|38973_39285_+	hypothetical protein	NA	NA	NA	NA
WP_001151304.1\|39458_40244_+	ParA family protein	A0A1X9IGI7	Lactococcus_phage	6.1e-11	26.4
WP_001207227.1\|40247_41429_+	ParB/RepB/Spo0J family partition protein	I3NLC2	Bifidobacterium_phage	2.4e-11	28.7

DBSCAN-SWA_2

115344 : 172226

Escherichia_phage(33.33%)

transposase,integrase

attL 120481:120540|attR 167191:168011

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000427614.1\|115344_116349_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_001138073.1\|116427_119400_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.1
WP_001162012.1\|119402_119960_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	5.8e-48	81.3
WP_122146091.1\|119997_120288_-\|transposase	transposase	NA	NA	NA	NA
120481:120540	attL	NA	NA	NA	NA
WP_001067855.1\|120543_121248_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000052512.1\|121697_123173_+	ABC-F type ribosomal protection protein Msr(E)	A0A1B0RXA0	Streptococcus_phage	2.3e-160	59.0
WP_000155092.1\|123228_124113_+	Mph(E) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_004896925.1\|124471_125014_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|125898_126603_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000018326.1\|126721_127537_+	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	4.3e-161	98.5
WP_001067855.1\|127719_128424_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000935452.1\|128470_129775_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_000204520.1\|129813_130521_-	EAL domain-containing protein	NA	NA	NA	NA
WP_000993386.1\|130517_130754_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001277456.1\|130750_131113_-	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_015063453.1\|131130_132825_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	8.8e-39	27.6
WP_000522996.1\|132863_133289_-	organomercurial transporter MerC	NA	NA	NA	NA
WP_000732275.1\|133316_133592_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_001294656.1\|133607_133973_-	mercuric ion transporter MerT	NA	NA	NA	NA
WP_001166628.1\|134044_134500_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_000787563.1\|135846_136119_+	MafI family immunity protein	NA	NA	NA	NA
WP_084845456.1\|136123_136348_+	hypothetical protein	NA	NA	NA	NA
WP_000243483.1\|136378_136714_+	hypothetical protein	NA	NA	NA	NA
WP_139972925.1\|136880_137060_+	hypothetical protein	NA	NA	NA	NA
WP_000027057.1\|137170_138031_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001067855.1\|139774_140479_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_004152403.1\|140551_143449_+\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	2.7e-181	37.7
WP_004152402.1\|143537_144158_+	recombinase family protein	A0A219Y912	Aeromonas_phage	2.0e-09	31.5
WP_004152400.1\|145323_145683_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	3.6e-19	62.0
WP_004152398.1\|146186_147371_+\|transposase	ISAs1-like element ISKpn31 family transposase	NA	NA	NA	NA
WP_004152397.1\|147647_148967_+\|transposase	IS1182-like element ISKpn6 family transposase	Q9MBP7	Staphylococcus_prophage	1.9e-12	24.2
WP_004199234.1\|149216_150098_-	carbapenem-hydrolyzing class A beta-lactamase KPC-2	A0A1B0VBP7	Salmonella_phage	2.2e-73	52.2
WP_004152395.1\|150149_150389_-	hypothetical protein	NA	NA	NA	NA
WP_004152394.1\|150385_151165_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.5e-89	61.8
WP_004199214.1\|151161_152187_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-87	50.3
WP_004152392.1\|152293_155323_-\|transposase	IS3-like element Tn4401 family transposase	NA	NA	NA	NA
WP_004152391.1\|155432_157148_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_001445937.1\|157682_158639_+	hypothetical protein	NA	NA	NA	NA
WP_000278322.1\|159366_159969_-	hypothetical protein	NA	NA	NA	NA
WP_000243801.1\|160191_160512_+	hypothetical protein	NA	NA	NA	NA
WP_000932880.1\|160530_160818_+	hypothetical protein	NA	NA	NA	NA
WP_000949433.1\|160810_161347_+	hypothetical protein	NA	NA	NA	NA
WP_000543934.1\|161349_162360_+\|integrase	tyrosine-type recombinase/integrase	A0A0K0N6I5	Gordonia_phage	3.1e-07	31.9
WP_079390445.1\|162689_165770_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	8.2e-51	30.6
WP_011918375.1\|165793_166105_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_011787805.1\|166104_166365_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_001067855.1\|167253_167958_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000859348.1\|168115_168262_+	DUF2474 domain-containing protein	NA	NA	NA	NA
167191:168011	attR	NA	NA	NA	NA
WP_007372360.1\|168422_169574_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_001141269.1\|170259_170535_-	formaldehyde-responsive transcriptional repressor FrmR	NA	NA	NA	NA
WP_087776199.1\|171018_172226_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	2.6e-101	62.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP040070

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1262 : 55476

Macacine_betaherpesvirus(26.32%)

integrase,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001066942.1\|1262_2003_-\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	2.0e-24	57.6
WP_023141670.1\|2123_2249_-	hypothetical protein	NA	NA	NA	NA
WP_042012863.1\|2957_3152_-	hypothetical protein	NA	NA	NA	NA
WP_001072355.1\|3448_4618_+	hypothetical protein	NA	NA	NA	NA
WP_001105060.1\|4813_5107_-	hypothetical protein	NA	NA	NA	NA
WP_089455122.1\|7088_7268_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_001067855.1\|7258_7963_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_013362816.1\|8285_9818_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_013362817.1\|10346_10796_-	hypothetical protein	NA	NA	NA	NA
WP_139972939.1\|11304_12424_+\|transposase	IS3-like element ISSen4 family transposase	S5WIU1	Leptospira_phage	3.9e-51	42.4
WP_100249774.1\|12512_12623_-	hypothetical protein	E4ZFP9	Streptococcus_phage	1.9e-08	88.6
WP_013362818.1\|12627_13365_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	E4ZFQ0	Streptococcus_phage	6.3e-135	99.6
WP_013362819.1\|13490_13586_-	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA
WP_001067855.1\|13720_14425_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000219391.1\|14546_15452_+	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_000004159.1\|15448_16687_+	MFS transporter	NA	NA	NA	NA
WP_001137892.1\|16686_17271_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_001336397.1\|17216_17573_+	hypothetical protein	NA	NA	NA	NA
WP_001389365.1\|17763_18528_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_024143553.1\|18556_18739_+	hypothetical protein	NA	NA	NA	NA
WP_000130000.1\|18754_19060_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000184001.1\|19070_20276_-	chromate efflux transporter	NA	NA	NA	NA
WP_000376616.1\|20431_20635_-	hypothetical protein	NA	NA	NA	NA
WP_001993321.1\|20653_20833_+	hypothetical protein	NA	NA	NA	NA
WP_000259031.1\|20762_21602_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000679427.1\|21595_21943_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000503573.1\|22148_22937_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA5	NA	NA	NA	NA
WP_001389366.1\|23067_23541_-	trimethoprim-resistant dihydrofolate reductase DfrA17	A0A1B2IAU3	Erwinia_phage	1.3e-16	34.6
WP_001067855.1\|24443_25148_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000439434.1\|26458_26791_-	hypothetical protein	NA	NA	NA	NA
WP_000557619.1\|26792_27050_-	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA
WP_000616807.1\|27142_27796_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000130640.1\|28735_29593_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_031943482.1\|29585_29660_-	RepA leader peptide Tap	NA	NA	NA	NA
WP_000083850.1\|29896_30151_-	replication regulatory protein RepA	NA	NA	NA	NA
WP_023144756.1\|30447_30582_-	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
WP_013023861.1\|31452_31665_-	hypothetical protein	NA	NA	NA	NA
WP_000139341.1\|31795_32356_-	fertility inhibition protein FinO	NA	NA	NA	NA
WP_000205718.1\|32410_33157_-	type-F conjugative transfer system pilin acetylase TraX	A0A077JBM8	Xanthomonas_phage	3.2e-09	30.9
WP_001671341.1\|38225_38528_-	antirestriction protein	NA	NA	NA	NA
WP_000274437.1\|39894_40329_-	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_001104873.1\|40342_40564_-	hypothetical protein	NA	NA	NA	NA
WP_000086185.1\|40564_41248_-	DNA methylase	A0A2I7RE86	Vibrio_phage	5.1e-30	36.9
WP_001348615.1\|41632_42535_-	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_001349526.1\|42572_42845_-	hypothetical protein	NA	NA	NA	NA
WP_000817036.1\|43401_44373_-	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	7.0e-174	99.4
WP_000772446.1\|44372_45539_-	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	7.0e-229	100.0
WP_001241949.1\|46126_46396_-	RepB family plasmid replication initiator protein	I3WF20	Macacine_betaherpesvirus	7.6e-46	100.0
WP_139972940.1\|46452_47665_+\|transposase	IS3-like element IS629 family transposase	Q6H9S3	Enterobacteria_phage	4.9e-169	99.7
WP_000016982.1\|48968_49775_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.8e-57	100.0
WP_001159868.1\|49775_50081_-	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA
WP_000813634.1\|50082_50301_-	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA
WP_000215657.1\|50934_51132_+	hypothetical protein	NA	NA	NA	NA
WP_000642771.1\|51128_51413_-	hypothetical protein	NA	NA	NA	NA
WP_085961182.1\|52512_53726_-\|transposase	IS3-like element IS629 family transposase	Q6H9S3	Enterobacteria_phage	4.9e-169	99.7
WP_000080195.1\|53862_55476_-\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.0e-182	63.6

DBSCAN-SWA_2

66418 : 77032

Escherichia_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001553854.1\|66418_69535_-	HsdR family type I site-specific deoxyribonuclease	A0A220A398	Liberibacter_phage	3.7e-27	24.0
WP_001553855.1\|69656_70940_-	restriction endonuclease subunit S	F2Y1N5	Organic_Lake_phycodnavirus	2.9e-10	26.5
WP_001553856.1\|70936_72493_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	7.1e-104	42.5
WP_001190712.1\|72675_72897_+	type II toxin-antitoxin system Phd/YefM family antitoxin	A0A222YXU1	Escherichia_phage	6.7e-32	100.0
WP_085947917.1\|73056_74329_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.4e-177	99.3
WP_001513661.1\|74617_74797_+	hypothetical protein	Q71TH5	Escherichia_phage	3.5e-23	96.6
WP_001513660.1\|74824_75184_+	hypothetical protein	A0A077SLM1	Escherichia_phage	5.0e-45	98.9
WP_001513659.1\|75470_75788_-	hypothetical protein	NA	NA	NA	NA
WP_012372828.1\|76015_77032_-\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	4.9e-186	99.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage