CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041008	Pseudomonas aeruginosa strain FDAARGOS_767 chromosome, complete genome	3 crisprs	csa3,DEDDh,RT,DinG,WYL,cas3	1	1	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041008_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041008_1

4049791-4050018

Orphan

Consensus_repeat	Method
CTTGCTCCCTCCCCGTGTAGGGCGAATAACCGCTACGCGGTTATCCGCCA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP041008_1

>merge|NZ_CP041008|1|4049791-4050018|PILER-CR
CCCGGCGTAGGACGAATAACCGCCAGCTCGGCAGAGGCTACGGCGGATAACGCCTGGGGGCGTTATTCGCCCTACCGCTTGCTCCCTCCCCGTGTAGGGCGAATAACCGCTACGCGGTTATCCGCCACCTCGGCAGGCGTTTCGGCGGATAACGCCTGGGGCGTTATTCGCCCTACCGCTTGCTCCCTCCCCGTGTAGGGCGAATAACCGCTACGCGGTTATCCGCCA

>NZ_CP041008|1|1|4049791-4050018|PILER-CR
CCCGGCGTAGGACGAATAACCGCCAGCTCGGCAGAGGCTACGGCGGATAA	CGCCTGGGGGCGTTATTCGCCCTACCGCTTGCTCCCTCCCCGTGTAGGGCGAAT
AACCGCTACGCGGTTATCCGCCACCTCGGCAGGCGTTTCGGCGGATAACG	CCTGGGGCGTTATTCGCCCTACCGCTTGCTCCCTCCCCGTGTAGGGCGAAT
AACCGCTACGCGGTTATCCGCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041008.1\|WP_003111019.1\|4044528_4045440_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187611
NZ_CP041008.1\|WP_003102335.1\|4041836_4043243_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274522
NZ_CP041008.1\|WP_003102311.1\|4056036_4056861_-\|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183055
NZ_CP041008.1\|WP_003091873.1\|4043277_4043622_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|225981
NZ_CP041008.1\|WP_003102323.1\|4047748_4048435_-\|LrgB-family-protein	unknown	unknown	gnl\|CDD\|224265
NZ_CP041008.1\|WP_003091885.1\|4048421_4048811_-\|CidA/LrgA-family-protein	unknown	unknown	gnl\|CDD\|224298
NZ_CP041008.1\|WP_003091899.1\|4055262_4055601_+\|HopJ-type-III-effector-protein	unknown	unknown	gnl\|CDD\|378082
NZ_CP041008.1\|WP_003102319.1\|4051715_4052168_-\|flavodoxin	unknown	unknown	gnl\|CDD\|168208
NZ_CP041008.1\|WP_003091896.1\|4053837_4054398_+\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|237149
NZ_CP041008.1\|WP_003114490.1\|4046840_4047620_-\|class-II-aldolase/adducin-family-protein	unknown	unknown	gnl\|CDD\|235916
NZ_CP041008.1\|WP_003091900.1\|4055780_4055996_-\|molybdopterin-binding-protein	unknown	unknown	gnl\|CDD\|226113
NZ_CP041008.1\|WP_003119583.1\|4041002_4041746_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378964
NZ_CP041008.1\|WP_003091895.1\|4053115_4053820_+\|dihydromonapterin-reductase	unknown	unknown	gnl\|CDD\|180586
NZ_CP041008.1\|WP_003091898.1\|4054899_4055211_+\|DUF1244-domain-containing-protein	unknown	unknown	gnl\|CDD\|226023
NZ_CP041008.1\|WP_003091874.1\|4043641_4044412_-\|crotonase/enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl\|CDD\|236205
NZ_CP041008.1\|WP_003102328.1\|4045947_4046844_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP041008.1\|WP_003091897.1\|4054399_4054771_+\|dihydroneopterin-triphosphate-2'-epimerase	unknown	unknown	gnl\|CDD\|183053
NZ_CP041008.1\|WP_003111015.1\|4052447_4053005_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225765
NZ_CP041008.1\|WP_003147159.1\|4050336_4051353_-\|IS110-like-element-ISPa11-family-transposase	unknown	unknown	gnl\|CDD\|226077
NZ_CP041008.1\|WP_003114489.1\|4045555_4045849_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP041008.1\|WP_003111019.1\|4044528_4045440_-\|SDR-family-oxidoreductase	gnl\|CDD\|187611	cd05353, hydroxyacyl-CoA-like_DH_SDR_c-like, (3R)-hydroxyacyl-CoA dehydrogenase-like, classical(c)-like SDRs. Beta oxidation of fatty acids in eukaryotes occurs by a four-reaction cycle, that may take place in mitochondria or in peroxisomes. (3R)-hydroxyacyl-CoA dehydrogenase is part of rat peroxisomal multifunctional MFE-2, it is a member of the NAD-dependent SDRs, but contains an additional small C-terminal domain that completes the active site pocket and participates in dimerization. The atypical, additional C-terminal extension allows for more extensive dimerization contact than other SDRs. MFE-2 catalyzes the second and third reactions of the peroxisomal beta oxidation cycle. Proteins in this subgroup have a typical catalytic triad, but have a His in place of the usual upstream Asn. This subgroup also contains members identified as 17-beta-hydroxysteroid dehydrogenases, including human peroxisomal 17-beta-hydroxysteroid dehydrogenase type 4 (17beta-HSD type 4, aka MFE-2, encoded by HSD17B4 gene) which is involved in fatty acid beta-oxidation and steroid metabolism. This subgroup also includes two SDR domains of the Neurospora crassa and Saccharomyces cerevisiae multifunctional beta-oxidation protein (MFP, aka Fox2). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	5.71079e-146
NZ_CP041008.1\|WP_003102335.1\|4041836_4043243_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|274522	TIGR03329, Phn_aa_oxid, putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.	1.89748e-57
NZ_CP041008.1\|WP_003102311.1\|4056036_4056861_-\|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183055	PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional.	3.88487e-166
NZ_CP041008.1\|WP_003091873.1\|4043277_4043622_+\|cupin-domain-containing-protein	gnl\|CDD\|225981	COG3450, COG3450, Predicted enzyme of the cupin superfamily [General function prediction only].	8.31479e-48
NZ_CP041008.1\|WP_003102323.1\|4047748_4048435_-\|LrgB-family-protein	gnl\|CDD\|224265	COG1346, LrgB, Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane].	2.0025e-93
NZ_CP041008.1\|WP_003091885.1\|4048421_4048811_-\|CidA/LrgA-family-protein	gnl\|CDD\|224298	COG1380, COG1380, Putative effector of murein hydrolase LrgA [General function prediction only].	3.74785e-31
NZ_CP041008.1\|WP_003091899.1\|4055262_4055601_+\|HopJ-type-III-effector-protein	gnl\|CDD\|378082	pfam08888, HopJ, HopJ type III effector protein. Pathovars of Pseudomonas syringae interact with their plant hosts via the action of Hrp outer protein (Hop) effector proteins, injected into plant cells by the type III secretion system. The proteins in this family are called HopJ after the original member HopPmaJ.	4.35687e-54
NZ_CP041008.1\|WP_003102319.1\|4051715_4052168_-\|flavodoxin	gnl\|CDD\|168208	PRK05723, PRK05723, flavodoxin; Provisional.	5.35164e-98
NZ_CP041008.1\|WP_003091896.1\|4053837_4054398_+\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|237149	PRK12606, PRK12606, GTP cyclohydrolase I; Reviewed.	1.62465e-124
NZ_CP041008.1\|WP_003114490.1\|4046840_4047620_-\|class-II-aldolase/adducin-family-protein	gnl\|CDD\|235916	PRK07044, PRK07044, aldolase II superfamily protein; Provisional.	1.76467e-159
NZ_CP041008.1\|WP_003091900.1\|4055780_4055996_-\|molybdopterin-binding-protein	gnl\|CDD\|226113	COG3585, MopI, Molybdopterin-binding protein [Coenzyme metabolism].	5.68345e-18
NZ_CP041008.1\|WP_003119583.1\|4041002_4041746_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378964	pfam12833, HTH_18, Helix-turn-helix domain.	3.89695e-17
NZ_CP041008.1\|WP_003091895.1\|4053115_4053820_+\|dihydromonapterin-reductase	gnl\|CDD\|180586	PRK06483, PRK06483, dihydromonapterin reductase; Provisional.	3.29755e-150
NZ_CP041008.1\|WP_003091898.1\|4054899_4055211_+\|DUF1244-domain-containing-protein	gnl\|CDD\|226023	COG3492, COG3492, Uncharacterized protein conserved in bacteria [Function unknown].	2.30637e-55
NZ_CP041008.1\|WP_003091874.1\|4043641_4044412_-\|crotonase/enoyl-CoA-hydratase-family-protein	gnl\|CDD\|236205	PRK08259, PRK08259, crotonase/enoyl-CoA hydratase family protein.	2.19023e-155
NZ_CP041008.1\|WP_003102328.1\|4045947_4046844_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.05112e-20
NZ_CP041008.1\|WP_003091897.1\|4054399_4054771_+\|dihydroneopterin-triphosphate-2'-epimerase	gnl\|CDD\|183053	PRK11245, folX, dihydroneopterin triphosphate 2'-epimerase.	3.45838e-76
NZ_CP041008.1\|WP_003111015.1\|4052447_4053005_+\|hypothetical-protein	gnl\|CDD\|225765	COG3224, COG3224, Uncharacterized protein conserved in bacteria [Function unknown].	1.18537e-84
NZ_CP041008.1\|WP_003147159.1\|4050336_4051353_-\|IS110-like-element-ISPa11-family-transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.79496e-53

>NZ_CP041008.1|WP_003091885.1|4048421_4048811_-|CidA/LrgA-family-protein
MLPPLVRRLSRLAAELAVLIAFWWAGGWLAKAIGLPLPGGVVGLAALLLLFASGLLRPAWLQAGAGLLLAEMLLFFIPALMSLLDYGALLRSEGWRILLVIMLSTLLVMLVTAVSVEWMCRWRARHESR
>NZ_CP041008.1|WP_003102323.1|4047748_4048435_-|LrgB-family-protein
MSLDKQALFWLAATVGGYLLSRQLYRRVKWYWLSPIVFVPVLLYALAIPTHTRYADYARDTNWLVALLGPATVAFAIPIWQQRELLMRHWPALLAGMFAGTAVAIGSSWALAQALALDGQVTLSLLPRSITTPFAMEMSHDLGGVPELTAAFVMITGVFGAVIGGTLLRVLRLRTPLARGALFGVGAHGAGTSRAYEFGGEEGSAAGLLMVLTGLFNLLVAPLVAHCL
>NZ_CP041008.1|WP_003114490.1|4046840_4047620_-|class-II-aldolase/adducin-family-protein
MTAVHSLPADVQAQVSAAEWQTRVDLAACYRLVALHGWDDLIFTHISAKVPGTEDFLINPFGLMFHEITASSLVKVDASGKKLMDSPYEINPAGYTIHSAVHEVRHDVECVLHTHTAAGIAVSCQKQGLLPLSQQSLFVLSSLSYHAYEGVALNHEEKARLQADLGASNFLILPNHGLLTCGGSIADTFLMMFTLQRACEVQVMAQSGGAELIHIPGQILAGARDMIAGVMRSKTGMGGQLAWPALLRKLDQQNPGYRQ
>NZ_CP041008.1|WP_003102328.1|4045947_4046844_-|alpha/beta-hydrolase
MTAALPGIPLEAWRRRGRTLDFKGFPIRYWEAGQGRPLLLIHGFPSAAWDWHYLWEPLAQRYRVLVCDLLGFGDSAKPRAHRYSLLEQADLQQALLGRLGIDEPLHVLAHDYGDSVAQELLARHHEGRLRLASCVFLNGGLFPETHRPVLSQKLLLSPLGGLFGRLFDRRALARNFAKVFGPRSQPGETELDAFWSLIESNQGQRVMHRLIRYIVDRREQRERWVAALQHGGVPLRVIDGAVDPISGAHMVERYRQLVADADCVLLDGIGHYPQIEAPAAVLEHYLAFRARLDDSEFS
>NZ_CP041008.1|WP_003114489.1|4045555_4045849_-|hypothetical-protein
MHDPVSPLRAFDEGSWLFRQMVQAQPFIRQSGMVLAELGLLLALGLGYLCWQEGSRWYAVGAGLALLGSLLLVVVRHNYDWWLFKLGPRGRLYIPFD
>NZ_CP041008.1|WP_003111019.1|4044528_4045440_-|SDR-family-oxidoreductase
MSDALRFDDQVVIVTGAGGGLGRAHALLFAKHGARVVVNDLGGSTHGEGASASAADKVVAEIRAAGGTAVANHDSVTDGGRIVENALDAFGRVDVVVNNAGILRDKTFHKMEDADWDLVYQVHVEGAYKVTRAAWPHLREQAYGRVVFTSSTSGIYGNFGQSNYGMAKLGLYGLTRTLALEGRKNNILVNAIAPTGGTRMTEGLIPPQVFEQLKPELVSPLVVYLGSSACEDTSGLYEVGGGWIGKVRWERSLGFGFDPKAGFDAEDVAAHWQQICDFENAAHPADNVEALREMMANLQKHAL
>NZ_CP041008.1|WP_003091874.1|4043641_4044412_-|crotonase/enoyl-CoA-hydratase-family-protein
MSVIVERNGPVTTLVIARPERRNAVDRPTAQALADALREFEADDTARVAVLTGSGGNFCAGADLAAVAEDGERRNRLEAEGDGPMGPSRMQLGKPLIAAIEGYAVAGGLELALLADLRVMAEDAICGVFCRRFGVPLIDGGSVRLPRIVGQGRALDLILTGRPVKADEALQIGLANRVVPSGSARAEAEELAAELAAFPQTCMLADRASVYAQWELSFDVALANEFQGGLAVIESGETLEGAQRFKDGEGRHGRFE
>NZ_CP041008.1|WP_003091873.1|4043277_4043622_+|cupin-domain-containing-protein
MALTLLKNTAGADLGAASPVAVPLGEPVAQTRAYAVERTDQVETGIWECTPGRWRRQIVEQEFCHFLQGRCTFTPDGGETIRIEAGDALLLPENSLGVWDVQETVRKSYVIIHR
>NZ_CP041008.1|WP_003102335.1|4041836_4043243_+|FAD-dependent-oxidoreductase
MSAWRHLSLWMNQLDDPLEARPSLEESLEVDVAIVGAGYTGLWTAYYLKRRAPQLRVAIVEAETAGFGASGRNGGWLMGNLLGEDGLLAGLPPERRRAGYDLLHGIPDEVARVLQEEGIDCDYRKGGVLYCAARYPEQERRLRAYLHDLYAEGLDESDYRWLTPQELDQQLRIPGSYGAIHSPHCATIQPARLARGLARAVERLGVRLFEKSRVLHWQRGLLRTERGELRAEWIVPAVEGYAASLPPLGHYQLPVQSLLVATEPLPSSVWAEIGLERGQAFSEFSRQVTYGQRTADDRLAFGARGGYRFGGKLRSDFSLDDEEVGLRRYLFGELFPLLKDARISHTWGGNLGMARRFRPHMLLDRASGIALSGGYGGEGVGASNLGGRTLAALILGEDSELLRQPWVLGERPLDSLARWEPEPCRWLGYNAIIRSFVHEDRVLADPHSAPWRRSLAQTLAAGMESLMR
>NZ_CP041008.1|WP_003119583.1|4041002_4041746_+|helix-turn-helix-domain-containing-protein
MRYHLSWKHRDIDAVMALYHPEVEYNDFFQNRRMRLADLREYVEATMPKGPDESLEHTDRIRFDGDTAFIQYRLRVTLSGRLASFRASEAITVRDGLIWRINEYASLVHESGGGAQAGGDGRPPASRLGLSAKQLSLLARDLEHYFQQAQPYLDPDLDLTQVANATGYTRNQISYLLNQVLGLSFYQYVNQTRLQHLLGQLSGELPGRVDELAFAAGFNSLSAFYRCFRQHTGQSPREYLKRLSSRR
>NZ_CP041008.1|WP_003147159.1|4050336_4051353_-|IS110-like-element-ISPa11-family-transposase
MNLSRIGLDLAKQVFQVHGVDRHEHVVCRRQLKRAQVRDFFRQLPPCLVAMEACGSAHYWARELRELGHTVRLIAPQFVKPYVKGDKHDAHDAEAICEAASRPSMRYVPVKSAEQQAVQSMHRVRSRLVRARTALCNEVRGLLGEFGLIATRRGRAATMALLETVMATEPAPLPAPMGELLRELKDELQTLEARIARLERQIQAHVRGDARIQRLLAVEGIGPISASAVAASAGDARQFRTGRQFAAWLGLVPRQHSTGGQQRLGNISKRGDTYLRTLLIHGARAVVRCCANKTDARSRWLQGLLQRRPANVVAVALANKNARILWALLSRETCYRPG
>NZ_CP041008.1|WP_003102319.1|4051715_4052168_-|flavodoxin
MKVAILSGSVYGTAEEVARHAQKLLSAAGLEASHLPRASLDELKAFAPEAFLVVTSTTGMGELPDNLQPLYYAIRDQLPAWHGLPGGVIGLGDSSYGDTFCGGGEQVRELFGELGVREVLPMLRLDASETVTPETDAEPWLAEFAAALKG
>NZ_CP041008.1|WP_003111015.1|4052447_4053005_+|hypothetical-protein
MSTAPVTLLVARRVAAGRYRDFLAWQREGEALAADFPGYLGSGALAPPAGGDEFQMIFRFADDATLAAWAHSASRQAWLERGQGLFDEPREHRAHGLAAWFDDNRKPPRWKQSVAIWLAFFPVSLAFNLGAGPYLGELSLAARVLLSTLVLTPLMTYWFIPLSSRLLAPWLHRRPQRAASLPEAH
>NZ_CP041008.1|WP_003091895.1|4053115_4053820_+|dihydromonapterin-reductase
MATAPILITGASQRVGLHCARRLLADGESVIVSYRSERPALDELRQAGALTLHADFASEAGIFAFIGALRQHTDSLRAIVHNASDWVAETPGHEAEAFQQLFSVHMLAPYLINLHCAELLERSQPADIVHLTDDVARKGSARRIAYCASKAGLDNLTLSFAARFAPRIKVNAISPALVMFNDGDDAEYRARTLAKSALGIEPGPEVIYQSLRYLLDNPYVTGTTLTVNGGRHVK
>NZ_CP041008.1|WP_003091896.1|4053837_4054398_+|GTP-cyclohydrolase-I-FolE
MNPALSQHYREILVGLGEDPQREGLLDTPKRAAKAMQYLCHGYGQTLEEIVNGALFASDNDEMVIVRDIELYSLCEHHLLPFIGKAHVAYIPTGKVLGLSKVARIVDMFARRLQIQENLTRQIAEAVRQVTSAAGVAVVIEAQHMCMMMRGVEKQNSQMFTSVMLGAFRDSNTTRQEFLQLIGRSK
>NZ_CP041008.1|WP_003091897.1|4054399_4054771_+|dihydroneopterin-triphosphate-2'-epimerase
MPRLEPGMARIRVKDLRLRTFIGIKEEEILNKQDVLINLTILYPAADAVEVNDIEHALNYRTITKAIIRHVEENRFALLERMTQEILDLVMENPAVRYAEVEVDKPHALRFAESVSITLAGHR
>NZ_CP041008.1|WP_003091898.1|4054899_4055211_+|DUF1244-domain-containing-protein
MTAANLTEQQRLELEAAAFRTLVHHLQTRKDVQNIDLMNLAGFCRNCLSKWYKAAADDLGVEVSNDQAREEIYGMPYAEWKAKYQKEASPEQQAAFAKSQGNA
>NZ_CP041008.1|WP_003091899.1|4055262_4055601_+|HopJ-type-III-effector-protein
MTLTDFRARLRSEHHLFTDTLAFIAEHYSYTPSAFDNGSVSNPAGQNEGSCKTLGFAILEGLSLEETLLAFGEHYRAVRDNPEGDDHANIRALQQTGLAGVHFERQPLSRRG
>NZ_CP041008.1|WP_003091900.1|4055780_4055996_-|molybdopterin-binding-protein
MTIKAINVRNQFKGTVKEIIEGPVLSEIDVQTAAGIVTSVITTRSVKELELAIGSEVIAFVKSTEVSIAKL
>NZ_CP041008.1|WP_003102311.1|4056036_4056861_-|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein
MNAHNAALGGTPQRLKRGIPLALRGVARRFGEREVLKDIDLLVPAGQFVAIVGRSGCGKSTLLRLLAGLDQPSRGELLAGSAALAEAREDTRLMFQDSRLLPWKRVIDNVGLGLRGDWRAKALQALRAVGLAERANEWPAALSGGQKQRVALARALIHEPRLLLLDEPLGALDALTRIEMQQLIEGLWREHGFTVLLVTHDVSEAVAVADRVILIEDGEIGLDLPVELPRPRSRGSARLAALEAEVLNRVLAQPELPPQPEPVSPLPTQLRWAL

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Crispr_ID: NZ_CP041008_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041008_2

5380636-5380749

Orphan

Consensus_repeat	Method
TCATACCTTGCCCTCCAGTTCTTTGGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041008_2

>merge|NZ_CP041008|2|5380636-5380749|CRISPRCasFinder
TCATACCTTGCCCTCCAGTTCTTTGGCCACGCTTCTGGATGGAGAGCCTGTTGAACGGGATACGGAGCGGGATACGCTGTGCTGGCTCATACCTTGCCCTCCAGTTCTTTGGCC

>NZ_CP041008|2|1|5380636-5380749|CRISPRCasFinder
TCATACCTTGCCCTCCAGTTCTTTGGCC	ACGCTTCTGGATGGAGAGCCTGTTGAACGGGATACGGAGCGGGATACGCTGTGCTGGC
TCATACCTTGCCCTCCAGTTCTTTGGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041008.1\|WP_003112945.1\|5370970_5371465_-\|DUF523-domain-containing-protein	unknown	unknown	gnl\|CDD\|224597
NZ_CP041008.1\|WP_003112941.1\|5376041_5377094_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NZ_CP041008.1\|WP_003112936.1\|5392195_5392861_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP041008.1\|WP_003118763.1\|5373825_5374845_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP041008.1\|WP_003112940.1\|5377204_5379592_+\|penicillin-acylase-family-protein	unknown	unknown	gnl\|CDD\|225241
NZ_CP041008.1\|WP_003112938.1\|5388408_5389161_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|336781
NZ_CP041008.1\|WP_003111119.1\|5393023_5393902_+\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
NZ_CP041008.1\|WP_004352065.1\|5374843_5375455_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239267
NZ_CP041008.1\|WP_003084303.1\|5381629_5382784_-\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226
NZ_CP041008.1\|WP_003084327.1\|5371730_5372285_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041008.1\|WP_003112937.1\|5389439_5390816_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP041008.1\|WP_003118764.1\|5372306_5373005_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226274
NZ_CP041008.1\|WP_003112942.1\|5375559_5376063_+\|transcriptional-regulator	unknown	unknown	unknown
NZ_CP041008.1\|WP_003084339.1\|5370275_5370968_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP041008.1\|WP_003107781.1\|5391071_5392133_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP041008.1\|WP_003084297.1\|5385573_5386944_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994
NZ_CP041008.1\|WP_003084320.1\|5373053_5373806_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041008.1\|WP_003084299.1\|5384354_5385458_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP041008.1\|WP_003084301.1\|5382838_5383936_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP041008.1\|WP_003084290.1\|5387009_5388368_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252

Protein	Function_ID	Function_description	E-value
NZ_CP041008.1\|WP_003112945.1\|5370970_5371465_-\|DUF523-domain-containing-protein	gnl\|CDD\|224597	COG1683, COG1683, Uncharacterized conserved protein [Function unknown].	2.14015e-67
NZ_CP041008.1\|WP_003112941.1\|5376041_5377094_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	2.54039e-32
NZ_CP041008.1\|WP_003112936.1\|5392195_5392861_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.70235e-09
NZ_CP041008.1\|WP_003118763.1\|5373825_5374845_-\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	3.48481e-56
NZ_CP041008.1\|WP_003112940.1\|5377204_5379592_+\|penicillin-acylase-family-protein	gnl\|CDD\|225241	COG2366, COG2366, Protein related to penicillin acylase [General function prediction only].	0
NZ_CP041008.1\|WP_003112938.1\|5388408_5389161_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	1.81471e-108
NZ_CP041008.1\|WP_003111119.1\|5393023_5393902_+\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP041008.1\|WP_004352065.1\|5374843_5375455_+\|hypothetical-protein	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	0.0013342
NZ_CP041008.1\|WP_003084303.1\|5381629_5382784_-\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
NZ_CP041008.1\|WP_003118764.1\|5372306_5373005_-\|hypothetical-protein	gnl\|CDD\|226274	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones].	2.81845e-78
NZ_CP041008.1\|WP_003084299.1\|5384354_5385458_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP041008.1\|WP_003107781.1\|5391071_5392133_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.00795e-165
NZ_CP041008.1\|WP_003112937.1\|5389439_5390816_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	1.09186e-161
NZ_CP041008.1\|WP_003084297.1\|5385573_5386944_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
NZ_CP041008.1\|WP_003084301.1\|5382838_5383936_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP041008.1\|WP_003084290.1\|5387009_5388368_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	5.71424e-158
NZ_CP041008.1\|WP_003084339.1\|5370275_5370968_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.29364e-79

>NZ_CP041008.1|WP_003112940.1|5377204_5379592_+|penicillin-acylase-family-protein
MKRTLTVIAVAVAAAAAGGAWYLHAKQPLRNGSLALAHLQAPVDVRYDERGVPHLYAQNQTDLYRALGYVHAQDRLFQMEMLRRLARGELAEVLGPKLVDTDRLFRTLRIRDHAAEYSARQDKQSQPWKVLEAYLDGVNQFQENNPAPLEFDLLGIPRRPFTPEDTLSIAGYMAYSFAAAFRTEPVLTYIRDELGSDYLRIFDLDWHPQGVLTPSGALGAGDWKDLGALARLSQQALEDAGLPQFEGSNAWVVAGSRTASGKPLLAGDPHIRFAAPAVWYEAQLSAPGFELYGHHQALNPFASLGHNRAFGWSLTMFQNDDLDLVAEKVNPDNPNQVWYQGEWVDLQSEEQEIAVKGAAPVKLTLRRSPHGPIVNDALGASSGKTPIAMWWAFLETENPVLDAFYQLNRADTLAKARAAASKIHSPGLNLVWANAAGDIGWWASAALPKRPEGVNPSFILDGSKGEADKSGFYPFADNPQEENPARGYIVSANFQPVPANGRPIPGYYNLADRGQWLDTQLADRGTKWNLDNSRALQLGNRTGYAPRLLAPLLPVLREVVDDAEGKRLVEQLAAWNGDYPVDSTAATLFNQLLFQIAEGALHDELGDAFFDSLIATRAIDSALPRLAGDADSPWWDDRRTERRETRADIVRTAWNASLAHLRGTLGNDPSGWLWGKAHTLTHEHALGQQALLRRLLNVGPFAAPGTHEVPNNLSAKIGPAPWAVTYGPSTRRLVDFADPTHSLGINPVGQSGVPFDGHYDDQAEAYIEGHYLPQHYEENEVKANSKGVLVLEPKR
>NZ_CP041008.1|WP_003112941.1|5376041_5377094_-|AraC-family-transcriptional-regulator
MQDDPSTSPLTHSATLRRLLYEALDALGLDPTRVYRSVYRRIPLPPPTLGGRLVHDNAPLFWTELAAVTGDADIGLHLGEAMKPRLLDVVGYLLLSARDLEEALRSFVRFQHILSGGFAARLEVEGETARLILDINYLGYASLRQQIECLMLLFLKLLALISDDEFVAERIEFRHRAPPRLGEHRRLFGRLPLFSRPHDALVFSAALLRRPSRNANPDMHDVLTRHAEEQSRELSENRLLNRVRYLIELRLGEGYGLRQCAAELGLGSGALQRALAAGGASFRQVRDEVRRQRASEMLLAGRAIREVAKACGFAELSPFYRAFRRWHAAPPEQYRARLAKREEGYSTSGT
>NZ_CP041008.1|WP_003112942.1|5375559_5376063_+|transcriptional-regulator
MSLRPTLALLALVSLPLMAAQNDPQPSSKELMKEHQAQIQNDLADVDYKRKRIVEANMNLTDQEGEKFWPIYNTYRTESDKLSKETLKLLLDYAQAYNSGNVSDDQASKLIERVDDLQEDRLELRDKYVKRIAKNVSPKRAMRFLQIEIQLDAIATLEIGRQVPLVE
>NZ_CP041008.1|WP_004352065.1|5374843_5375455_+|hypothetical-protein
MASLAPVFRVNAMTPRRKTLLVSLVGLLWAGGLLAAYWWFEIRYIRPFSEQTTLFSGDSLRLPAELAGPGAIRLVHFWDPACPCNVGNQQHLGELIERFAGKGVEFHVLQKPGSQGRLPDNLAALRALAGLPGSEQLPASPAVAIWDRDGRLAYFGPYSEGAVCTSSNSFIEPILEALLQGRPVDATHTLAVGCYCPWTPEKG
>NZ_CP041008.1|WP_003118763.1|5373825_5374845_-|alpha/beta-hydrolase
MCSRAAEYPWVSPVARPRIDCSPEPPMSEAFNPDYLRQHLRPLAAAEADAAVLAYQAYYGLDLRSRHPRLQARLGSMAVDGRRLAVQAWLLPEARGSLLLMHGYYDHMGLYRHVVDWALGMGFSVLACDLPGHGLSEGERASIRDFAEYQAVFKGLLGQAAELDLAAPWHLCGQSTGGAILLDYLLHGGERPELGETILLAPLVRPRAWGWSKLSYRLLSPFVDSIPRRFSENSSDPQFLDFLREHDPLQPRTLPTAWVGALTRWVPRIERAPRRALSPLVVQGESDETVDWRHGLKVLREKFDEPRILLLEEARHHLANESEGLRRRYFDFLSDALGA
>NZ_CP041008.1|WP_003084320.1|5373053_5373806_+|hypothetical-protein
MRALLAFALLLVGLPALADPYQRLYQAAGWPDQRAHFSDALDAAQKRYQDKLPPALYQTLVDNSNRRFAPAEVDQRALNGLRENLPDSASPLNFFESPLGRKVVAAEVLATRRDQLLQHSNGLPRQTASEPRRALVKRLAQVLPAREAGAEVSLALAGVAADSLSQMLPGLPGLLGGGQTGQLLEGQRQRLVQQIGADLENTLLYVYRDLSDAELTQYVNFAESPAGRSYYQAALAALKAGLAVDQAVAP
>NZ_CP041008.1|WP_003118764.1|5372306_5373005_-|hypothetical-protein
MGRYCRHAADRLSRHRGGTLQWTMHINVNHPLLHRIVDELVDQGWSHQSIFMPERLTTRLAEECRTRAVAGDLTPAAIGRGDGQVIREGIRGDLTQWLEPGESEACDEYLGVMDSLRQALNASLFLGLEDFECHFALYPPGAYYQKHVDRFRDDDARTVSAVLYLNDAWLPEHGGALRLHLPQRQVDIQPTGGSLVVFMSAGTEHEVLPASRDRLSLTGWFRRRNESLLQLS
>NZ_CP041008.1|WP_003084327.1|5371730_5372285_+|hypothetical-protein
MLPTRSLLPFFLAPALLASAASQAAMEALDNDSLSQVTGQAGISLRLDLRAGAARVAWVDDGGSLSLRNLVIDNGCVKAGDCPDGRGGNIPLGAAQLGLSLPIFGVEQPTLALDVTTGSGGGQQLAISLPDLATINDQLIASGLPAQRIRLRVASDLYIGDNSIGRIELRDITDLRGTIKVWGH
>NZ_CP041008.1|WP_003112945.1|5370970_5371465_-|DUF523-domain-containing-protein
MQKVLVSRCLLGHLVRYDGGSHGPFDLLSRWHAQGRIVALCPEVAGGLPTPRPPAEIPGGQGGEVLDRLNRVFTVDGEDVSEAFLLGAEAAVELVRRHDIRMAVLKARSPSCGNLENYDGRFNGNRVAGEGVTAAALKRMGVLVFNEDELDRAAVCLAGLDAGG
>NZ_CP041008.1|WP_003084339.1|5370275_5370968_+|amino-acid-ABC-transporter-permease
MNSLQKLLEWLANLVELLGMAWPFLLQGAMYTVLFAAVSMVLGLILGFSVAVVRVTKVPVVSQIAAVYVSAFRGTPLLVQIFVLYYGLPSVGIEFTPVTAGILALTLNVAAYLSESMRGAILGIDKGQWEAGLSVGLTWGQTLWNIITPQALRLAVPSLSNSLISLIKDTSLISVITVTELMLATKEVIAETFQPLPLYLAAAGIYWLLSALFERVQKALENRLTAPLRR
>NZ_CP041008.1|WP_003084303.1|5381629_5382784_-|polyamine-ABC-transporter-ATP-binding-protein
MAIASGAYKKALEGNQQPKEVLVKIDRVTKQFDETLAVDTVSLTINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIFLDGQDITDLPPYERPINMMFQSYALFPHMSVAQNIAFGLKQDGLPKAEIDERVAEMLKLVHMTQYAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAQRIAIMHLGCIEQIGSPMDIYETPASRLVCEFIGNVNLFDGVLVEDVQDHAVIACPQLENPIYIGHGISTRAEDKRITYALRPEKVMISAQKPDNLEHAGHNWAQGTVYDIAYLGGHSVYYIKLASGMIVQAFMANAERHVARPTWDQSVYISWYDDSGVVLQS
>NZ_CP041008.1|WP_003084301.1|5382838_5383936_-|polyamine-ABC-transporter-substrate-binding-protein
MQHSIGKTLLVAALATAIAGPVQAEKKSLHIYNWTDYIAPTTLKDFTKESGIDVSYDVFDSNETLEGKLVSGHSGYDIVVPSNNFLGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNAYAFIDYLLRPEVIAKVSDYVGYANAIPGARPLMDKSVSDSEEVYPPQAVLDKLYVSAVLPAKVLRLQTRTWTRIKTGK
>NZ_CP041008.1|WP_003084299.1|5384354_5385458_-|polyamine-ABC-transporter-substrate-binding-protein
MMKRFGKTLLALTLAGSVAGMAQAADNKVLHVYNWSDYIAPDTLEKFTKETGIKVVYDVYDSNEVLEAKLLAGKSGYDVVVPSNSFLAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLMKPEIMAEITDVVQFPNGNAAATPLVSEAIRNDPGIYPSEEVMKKLYTFPDLPAKTQRAMTRSWTKIKSGK
>NZ_CP041008.1|WP_003084297.1|5385573_5386944_-|aspartate-aminotransferase-family-protein
MNSQITNAKTREWQALSRDHHLPPFTDYKQLNEKGARIITKAEGVYIWDSEGNKILDAMAGLWCVNVGYGREELVQAATRQMRELPFYNLFFQTAHPPVVELAKAIADVAPEGMNHVFFTGSGSEANDTVLRMVRHYWATKGQPQKKVVIGRWNGYHGSTVAGVSLGGMKALHEQGDFPIPGIVHIAQPYWYGEGGDMSPDEFGVWAAEQLEKKILEVGEENVAAFIAEPIQGAGGVIVPPDTYWPKIREILAKYDILFIADEVICGFGRTGEWFGSQYYGNAPDLMPIAKGLTSGYIPMGGVVVRDEIVEVLNQGGEFYHGFTYSGHPVAAAVALENIRILREEKIIEKVKAETAPYLQKRWQELADHPLVGEARGVGMVAALELVKNKKTRERFTDKGVGMLCREHCFRNGLIMRAVGDTMIISPPLVIDPSQIDELITLARKCLDQTAAAVLA
>NZ_CP041008.1|WP_003084290.1|5387009_5388368_-|glutamine-synthetase
MTTKLDQLTSWLKERKITEVECLISDLTGIARGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYDLLDPADIDMVCRPDENAVFLVPWAIEPTAMVIHDTFDKLGNPIELSPRNILKRVLKMYADKGWRPIVAPEMEFYLTKRSDDPDYPLQAPVGRSGRQETGRQSFSIDAANEFDPLFEDMYDWCEAQGLDLDTLIHEEGTAQMEINFRHGDALDLADQILVFKRTMREAALKHNVAATFMAKPMTGEPGSAMHLHQSIVDVKTGKNIFSNADGTMSELFLHHIGGLQKFIPEVLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDSSPENRRVENRLAGADANPYLALAASLLCGYIGMVEGIKPSAQVKGRGYERRNLRLPLTIEAALERMENCKPLEQYLGSKFISGYVAVKRAEHENFKRVISSWEREFLLLSV
>NZ_CP041008.1|WP_003112938.1|5388408_5389161_-|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MSRLPLIGVTACTKQIGLHPYHIAGDKYLRAVVNGAGGLPLIIPALGESIDQAALLDSVDGLLFTGSPSNVEPRHYSGPASEPGTLHDSDRDATTLPLVRAAIDAGIPVLGICRGFQEMNVAFGGSLHQKVHEVGTFMDHREPADQPLEVQYAPRHAMHVQPGGVLAGIGLPSEFQVNSIHGQGVDRLAPGLRVEALAPDGLVEAISVEGAKAFALGVQWHPEWQVLTNPNYLAIFQAFGKACSKRAGQR
>NZ_CP041008.1|WP_003112937.1|5389439_5390816_+|glutamine-synthetase
MSVPQRAVQLTEPSEFLKEHPEVQFVDLLIADMNGVVRGKRIERNSLNKVFEKGINLPASLFALDITGSTVESTGLGLDIGDADRICYPIPGTLSMEPWQKRPTAQLLMTMHELEGEPFFADPREVLRQVVARFTEMELTIVAAFELEFYLIDQENVNGRPQPPRSPISGKRPQSVQVYSIDDLDEYVECLQDIIDGARAQGIPADAIVAESAPAQFEVNLNHVNDALKACDHAVLLKRLVKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISLLDKHGNNIFTSEDPEQNAALRHAIGGVLETLPASMAFLCPNVNSYRRFGSQFYVPNAPSWGLDNRTVALRVPTGSPDAVRLEHRVAGADANPYLLLAAVLAGVHHGLTNKVEPGAPIEGNSYEQMEPSLPNNLRDALRELDESEIMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>NZ_CP041008.1|WP_003107781.1|5391071_5392133_+|polyamine-ABC-transporter-substrate-binding-protein
MPRLSALLFLALAPWLAQAEETLRVYNWNDYIDPQVLESFQKDTGIRVEYHTFATAEELDKALRSGEAIDVAVPSHDTLPALLKDNLLRPLDFTQLPNRSHLDRQLLSKLAAVDPDNRHAVPYLWGAVGLAINTPQAEAAYGGPLPNSWSLLFDASQSQRLKSCGISLLDAPDETLAILLNYQGRNLGRTAPSQVRRAAEALHGLRPNLRYVDSERYIADLEGGRLCLAMAWVGDALRAAKAGQPVSFEVPQEGSVLFIDNLVIPAGAQHPREAHRFIDYLMQPKIAAQITAATLYPSGNADAAGFLDPALRQQPGLYPDRDTSRRLFALETPPEKLRPVVDEIWKAFRGASH
>NZ_CP041008.1|WP_003112936.1|5392195_5392861_+|TetR/AcrR-family-transcriptional-regulator
MQPTSPTRKPRASSQARIAAILDAARGLLADEGIGGLSIYSVAERAEMPPSSVYHFFPSVPALLQGLTGEVHAAFRACLEQPVDHAGLRCWRDLSRIVEERMLAVYARDAAARQLILASHGLAEVTQADRQHDVQLGQAMRALFERHFLLPPLPTDIEIFSLAMELGDRVYALSVQRHGIIDARLAEEGMRVFDAYLGLYLPPILEKRSEPLSGFISDLNR
>NZ_CP041008.1|WP_003111119.1|5393023_5393902_+|N-carbamoylputrescine-amidase
MTRNVTVAATQMACSWDRPANIARAEKLVRQAAARGAQIILIQELFETPYFCQKPNPDYLQLATTVEENAAIAHFQALARELQVVLPISFFERAGRARFNSIAVIDADGGNLGVYRKSHIPDGPGYHEKYYFNPGDTGFKVWQTRYARIGVGICWDQWFPESARSMALLGAELLFYPTAIGSEPHDASISSRDHWQRVQQGHAGANLMPLVASNRIGREEQDGYDITFYGSSFIADPFGEKVEELNRTEEGILVHTFDLDALERTRSAWGVFRDRRPNLYGPLKTLDGSLES

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Crispr_ID: NZ_CP041008_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041008_3

5800190-5800348

Orphan

Consensus_repeat	Method
GGGGGTGGGCTGAACGACGAGGCCTCGACAGGATGTCGGCTCGGCCTCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041008_3

>merge|NZ_CP041008|3|5800190-5800348|CRISPRCasFinder
GGGGGTGGGCTGAACGACGAGGCCTCGACAGGATGTCGGCTCGGCCTCACCCCAGACGCCGAACCGCATGGGTTTTTCAATGCGAACGACCGGCCAGGATGGCCGGGCTGGGGGTGGGCTGAACGACGAGGCCTCGACAGGATGTCGGCTCGGCCTCAC

>NZ_CP041008|3|2|5800190-5800348|CRISPRCasFinder
GGGGGTGGGCTGAACGACGAGGCCTCGACAGGATGTCGGCTCGGCCTCAC	CCCAGACGCCGAACCGCATGGGTTTTTCAATGCGAACGACCGGCCAGGATGGCCGGGCT
GGGGGTGGGCTGAACGACGAGGCCTCGACAGGATGTCGGCTCGGCCTCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041008.1\|WP_003096975.1\|5807371_5808250_+\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|226098
NZ_CP041008.1\|WP_003096987.1\|5799442_5800132_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223287
NZ_CP041008.1\|WP_003114123.1\|5801772_5804514_+\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NZ_CP041008.1\|WP_010895708.1\|5797221_5799426_+\|adenosylcobalamin-dependent-ribonucleoside-diphosphate-reductase	unknown	unknown	gnl\|CDD\|274168
NZ_CP041008.1\|WP_003114126.1\|5796188_5797112_+\|zinc-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226908
NZ_CP041008.1\|WP_003097002.1\|5791981_5792989_-\|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236863
NZ_CP041008.1\|WP_003096998.1\|5794025_5794814_-\|zinc-ABC-transporter-permease-subunit-ZnuB	unknown	unknown	gnl\|CDD\|181938
NZ_CP041008.1\|WP_003102831.1\|5805947_5806553_+\|cytochrome-c4	unknown	unknown	gnl\|CDD\|225418
NZ_CP041008.1\|WP_003096979.1\|5805608_5805902_+\|cytochrome-c5-family-protein	unknown	unknown	gnl\|CDD\|225784
NZ_CP041008.1\|WP_003096992.1\|5795615_5796119_-\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NZ_CP041008.1\|WP_003096984.1\|5801404_5801695_-\|DUF2782-domain-containing-protein	unknown	unknown	gnl\|CDD\|378588
NZ_CP041008.1\|WP_003102836.1\|5810379_5810973_+\|MarC-family-protein	unknown	unknown	gnl\|CDD\|170674
NZ_CP041008.1\|WP_003114124.1\|5800420_5801371_-\|homoserine-kinase	unknown	unknown	gnl\|CDD\|235369
NZ_CP041008.1\|WP_003096976.1\|5806720_5807356_+\|thiol:disulfide-interchange-protein-DsbA/DsbL	unknown	unknown	gnl\|CDD\|239317
NZ_CP041008.1\|WP_003099728.1\|5790445_5791228_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270315
NZ_CP041008.1\|WP_003097004.1\|5791304_5791982_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_CP041008.1\|WP_003142141.1\|5793195_5793984_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274513
NZ_CP041008.1\|WP_003114121.1\|5808246_5810262_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP041008.1\|WP_003096980.1\|5804777_5805425_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl\|CDD\|234770
NZ_CP041008.1\|WP_003114128.1\|5794806_5795616_-\|zinc-ABC-transporter-ATP-binding-protein-ZnuC	unknown	unknown	gnl\|CDD\|181939

Protein	Function_ID	Function_description	E-value
NZ_CP041008.1\|WP_003096975.1\|5807371_5808250_+\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|226098	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only].	1.23885e-61
NZ_CP041008.1\|WP_003096987.1\|5799442_5800132_+\|hypothetical-protein	gnl\|CDD\|223287	COG0209, NrdA, Ribonucleotide reductase, alpha subunit [Nucleotide transport and metabolism].	5.19108e-14
NZ_CP041008.1\|WP_003114123.1\|5801772_5804514_+\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NZ_CP041008.1\|WP_010895708.1\|5797221_5799426_+\|adenosylcobalamin-dependent-ribonucleoside-diphosphate-reductase	gnl\|CDD\|274168	TIGR02504, ribonucleotide_reductase, ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent. This model represents a group of adenosylcobalamin(B12)-dependent ribonucleotide reductases (Class II RNRs) related to the characterized species from Pyrococcus, Thermoplasma, Corynebacterium, and Deinococcus. RNR's are responsible for the conversion of the ribose sugar of RNA into the deoxyribose sugar of DNA. This is the rate-limiting step of DNA biosynthesis. This model identifies genes in a wide range of deeply branching bacteria. All are structurally related to the class I (non-heme iron dependent) RNRs. In most species this gene is known as NrdJ, while in mycobacteria it is called NrdZ. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	0
NZ_CP041008.1\|WP_003114126.1\|5796188_5797112_+\|zinc-ABC-transporter-substrate-binding-protein	gnl\|CDD\|226908	COG4531, ZnuA, ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism].	1.09964e-156
NZ_CP041008.1\|WP_003097002.1\|5791981_5792989_-\|methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|236863	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional.	0
NZ_CP041008.1\|WP_003096998.1\|5794025_5794814_-\|zinc-ABC-transporter-permease-subunit-ZnuB	gnl\|CDD\|181938	PRK09543, znuB, zinc ABC transporter permease subunit ZnuB.	7.07263e-93
NZ_CP041008.1\|WP_003102831.1\|5805947_5806553_+\|cytochrome-c4	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	1.5355e-43
NZ_CP041008.1\|WP_003096979.1\|5805608_5805902_+\|cytochrome-c5-family-protein	gnl\|CDD\|225784	COG3245, CycB, Cytochrome c5 [Energy production and conversion].	1.51706e-36
NZ_CP041008.1\|WP_003096992.1\|5795615_5796119_-\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	1.3923e-42
NZ_CP041008.1\|WP_003096984.1\|5801404_5801695_-\|DUF2782-domain-containing-protein	gnl\|CDD\|378588	pfam11191, DUF2782, Protein of unknown function (DUF2782). This is a bacterial family of proteins whose function is unknown.	3.76643e-30
NZ_CP041008.1\|WP_003102836.1\|5810379_5810973_+\|MarC-family-protein	gnl\|CDD\|170674	PRK10739, PRK10739, YhgN family NAAT transporter.	4.81982e-48
NZ_CP041008.1\|WP_003114124.1\|5800420_5801371_-\|homoserine-kinase	gnl\|CDD\|235369	PRK05231, PRK05231, homoserine kinase; Provisional.	2.28995e-166
NZ_CP041008.1\|WP_003096976.1\|5806720_5807356_+\|thiol:disulfide-interchange-protein-DsbA/DsbL	gnl\|CDD\|239317	cd03019, DsbA_DsbA, DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.	1.63388e-70
NZ_CP041008.1\|WP_003099728.1\|5790445_5791228_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270315	cd13597, PBP2_lipoprotein_Tp32, The substrate-binding domain of the 32-kilodalton lipoprotein (Tp32) from Treponema pallidum binds L-methionine; the type 2 periplasmic-binding protein fold. This group includes the lipoprotein Tp32, a periplasmic component of a methionine uptake transporter system, and its closely related homologs. The Tp32 has both structural and sequential homology to the MetQ family of substrate-binding protein, and thus it belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.	1.35188e-132
NZ_CP041008.1\|WP_003097004.1\|5791304_5791982_-\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	1.33335e-106
NZ_CP041008.1\|WP_003142141.1\|5793195_5793984_-\|hypothetical-protein	gnl\|CDD\|274513	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking].	0.000523404
NZ_CP041008.1\|WP_003114121.1\|5808246_5810262_+\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	3.07656e-62
NZ_CP041008.1\|WP_003096980.1\|5804777_5805425_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	6.08635e-107
NZ_CP041008.1\|WP_003114128.1\|5794806_5795616_-\|zinc-ABC-transporter-ATP-binding-protein-ZnuC	gnl\|CDD\|181939	PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.	4.09605e-114

>NZ_CP041008.1|WP_003096987.1|5799442_5800132_+|hypothetical-protein
MSAVKITQKIKGFKVVNEAEEQALAAAAEAASVVQMDETLERPDTLIGATYKIKSPLFEHALYVTINDMVLNAGTAHEQRRPFEIFINSKNMDHFQWIVALTRIMSAVFRKGGDCTFLVEELKAVFDPRGGYLKKGGIYMPSIVAEIGGVLERHLTAIGLLRGPELDEEQRLFLAEKRAAYEAAQGTSKVEPGEGFPAGAQLCGKCNSMAVVQMDGCATCLNCGHSKCG
>NZ_CP041008.1|WP_010895708.1|5797221_5799426_+|adenosylcobalamin-dependent-ribonucleoside-diphosphate-reductase
MLRTVAGFGRPNNHREVNQRMAKTDARSPRTERGTIALQDASQDIWDKKYRLKSKDGTPVDASVDGTWQRVARALADVEDKASREHWYGRFLWALRNGAIPAGRIISNAGALGHKPATSTINCTVSGTIQDSMDNILEKVHEAGLTLKAGCGIGYEFSTLRPRGAYVSGAGAYTSGPLSFMDIYDKMCFTVSSAGGRRGAQMGTFDVSHPDVREFIRAKREDGRLRQFNLSLLITDQFMQAVEQDADWPLVFPVHVKERDEIDLDDPNAVVWREWPIQDDYVQRADGLVACKVYGQVRARHLWDMIMVSTYDYAEPGFILIDRVNELNNNWWCEAIRATNPCGEQPLPPYGSCLLGSVNLTCFVEQPFGDEARFDWDRFREVVRVFTRMLDNVVEINGLPLEQQRQEILGKRRHGMGFLGLGSTLTLLKLRYGSPEACVFTEEVAREMALVGWEVALELAREKGPAPILAQDYEVTAEMLRKRPEMAADGYKAGDRIRGSVLHAKYSRYMQRVAEHAPELIEALAETGARFTHHSSIAPTGTISLSLANNASNGIEPSFAHHYSRNLIREGRKTKEKVEVYSYELLAYRTLVNAQALPDSDDPARRLPDYFITADSVTPAQHMDIQAAAQKWVDSSISKTANVPTDYPFEDFKDIYRYAWHQGLKGCTTFRFNPEAFQGVLVKESDLEKTRYRFELEDGSVVEFKGNEQVEYDGEIHTAANLFDALKEGYYGKY
>NZ_CP041008.1|WP_003114126.1|5796188_5797112_+|zinc-ABC-transporter-substrate-binding-protein
MTLRPFALLSTCFALFLLASPARAEVSVLTSIKPLQLVAAAIQDGVGQPDVLLPPGASPHQYALRPSDVRRLREVQLFYWIGPDLENFLPKVLAGRQGTSVAVQDLPGMHLRKFVNFEEEEHAGHDEHDHDHRPGMLDAHLWLLPANARTIAARMAEDLAQVDPANAGRYRANLKAFDERLGGLDGKLRERLGKLAGKPFFVFHEAFDYFEEAYGLRHTGVFAVSAEVQPGARHVAAMRAQLKAAGPACIFSEPPLRPRLADTLSEGLPVRLAELDDLGVNVSVDANGYENLLNNLAGEFAGCLEKL
>NZ_CP041008.1|WP_003096992.1|5795615_5796119_-|transcriptional-repressor
MYKIAPKTPLACQPHDHSQCVSTALAEADALCARQGVRLTELRRRVLELVWQSHKPLGAYDILAVLSETDGRRAAPPTVYRALDFLQENGLVHRIASLNAFVGCNNPEHSHQGQFLICRTCHTAIELEQPDISRAIVAGANSVGFAVESQTVEVVGLCGTCRDQKDA
>NZ_CP041008.1|WP_003114128.1|5794806_5795616_-|zinc-ABC-transporter-ATP-binding-protein-ZnuC
MDNALVRLTQVGVSFNGQAVLSDVDLAIEPGQIVTLIGPNGAGKTTLVRSVLGLLKPHVGEVWRRPRLTIGYMPQKLHVDATLPLSVLRFLRLVPGVKREQALAALREVGAAHVLERPLQSISGGELQRVLLARALLRKPELLVLDEPVQGVDVAGQAELYRLIGKLRDRYGCGVLMVSHDLHLVMSATDQVVCLNRHVCCSGHPEQVSGDPAFVELFGQDARSLAIYHHHHDHAHDLHGEVVKAGPGALPPGTRFTPVHKHGPDCNHG
>NZ_CP041008.1|WP_003096998.1|5794025_5794814_-|zinc-ABC-transporter-permease-subunit-ZnuB
MADFLLNALLAGLALALVAGPLGSFVVWRRMAYFGDTLSHAALLGVALGFLLDVSPTLAVTVGCVLLAVLLVTLQQRQPLAADTLLGILAHSTLSLGLVTLSFMKEVRVDLMAYLFGDLLAVSASDLLWIIAGSALVLALICFLWRPLLAITVHEELAKVEGLPVGAIRLALMLLIAIVIAVAMKIVGVLLITSLLIIPAAAAQRHARSPEQMAVGASLLGLVAVCAGLALSWFKDTPAGPSIVVSAAGLFLLSFVLPRRTV
>NZ_CP041008.1|WP_003142141.1|5793195_5793984_-|hypothetical-protein
MSSFFRLLSVLAAALLVSACQGNASSQPTPVVAPQAQPADPYAELQETLAAGKLEQAEQQWLALRSAAAGDERVEAFRRQLAEAYMQRGETALRQGDLNTATSALGHARGLMPKAPALTAGLDGAINRAKVDPARAEQARRMQQAAQQQMQQIIQTPPDGELKPLPGAPHLIDPQAASSAVPLPMLDGTGQGGLGAVLDAVAADVVAYRCRVHIEVRRDSDYPLVSDQLLARVKKLSPDFDLHLSHVVQADKPTRLILTPRN
>NZ_CP041008.1|WP_003097002.1|5791981_5792989_-|methionine-ABC-transporter-ATP-binding-protein
MIEFHDVHKTYRVAGREIPALQPTRLNIQAGQIFGLIGHSGAGKSTLLRLINRLEEPSGGRILVEGEDVTALDAEGLRRFRQRVGMIFQHFNLLSSKTVADNIAMPLRLAGGFSRAEVDARVSELLARVGLSDHARKYPAQLSGGQKQRVGIARALACRPSILLCDEATSALDPQTTASVLQLLAEINRELKLTIVLITHEMDVIRRVCDQVAVMDGGAIVEQGDVADVFLHPQHPTTRRFVFEAERVDEDERHDDFAHVPGLILRLTFRGEATYAPLLGTVARQTGVDYSILSGRIDRIKDTPYGQLTLALVGGDLEAAMSQLNAADVHVEVLR
>NZ_CP041008.1|WP_003097004.1|5791304_5791982_-|ABC-transporter-permease
MDFFETMSFANIDWYEIWLASVDTFWMLGGSLLFTVVLGLPLGVLLFLTGPRQMFEQKAVYTLLSLVVNILRSLPFIILLIVMIPLTVLITGTSLGVAGAIPPLVVGATPFFARLVETALREVDKGIIEATQAMGASTRQIIWNALLPEARPGIIAAITVTAITLVSYTAMAGVVGAGGLGDLAIRFGYQRFQTDVMVVTVVMLLILVQILQTVGDKLVVHFSRK
>NZ_CP041008.1|WP_003099728.1|5790445_5791228_-|ABC-transporter-substrate-binding-protein
MKKLLAAFSAVAALGLTAAQAAESLTVAATPVPHAEILNVVKPLLAKEGVDLKIKEFTDYVQPNVQVSEKRLDANFFQHQPYLDEFNKAKGTDLVAVTGVHIEPLGAYSSKYKKLDELPSGATVVIPNDATNGGRALLLLDKAGVIKLKDNKSITATPKDIVDNPKNIKIRELEAATLPRVLTQVDMALINTNYALEAKLNPTKDALAIEGSDSPYVNILVARPDNKDSDAMQKLAKALHSAEIKQFIQEKYKGAVVPAF
>NZ_CP041008.1|WP_003114124.1|5800420_5801371_-|homoserine-kinase
MSVFTPLERSTLEAFLAPYDLGRLRDFRGIAEGSENSNFFVSLEHGEFVLTLVERGPVQDLPFFIELLDVLHEDGLPVPYALRTRDGEALRRLEGKPALLQPRLAGRHERQPNAHHCQEVGDLLGHLHAATRGRILERPSDRGLPWMLEQGANLAPRLPEQARALLAPALAEIAALDAERPALPRANLHADLFRDNVLFDGPHLAGLIDFYNACSGWMLYDLAITLNDWCSNTDGSLDPARARALLAAYANRRPFTALEAEHWPSMLRVACVRFWLSRLIAAEAFAGQDVLIHDPAEFEIRLAQRQNVEIHLPFAL
>NZ_CP041008.1|WP_003096984.1|5801404_5801695_-|DUF2782-domain-containing-protein
MRTLNRLMLAGLLAFAPLVAMAADDDAPSGEPDVTIRQEGDKTIQEYRVNGFLYAIKVVPKHGKPYFLVRADGSDGNFIRSDQPDKLIPQWEIFSW
>NZ_CP041008.1|WP_003114123.1|5801772_5804514_+|DNA-polymerase-I
MSQAPLVLVDGSSYLYRAFHALPPLTTSTGKPTGAVKGVLNMLLSLRKQYPDSPFAVVFDAKGPTFRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLARSSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSRLDVDGVKEKFGVGPELIIDFLALMGDKVDNIPGVPGVGEKTALGLLTGVGGGLEVLYASLDKVPELPIRGAKGLPAKLEENREQAFLSYQLATIKTDVELDVEIDKLYPGEPQREALIALYRELEFKNWLDDLLREAKEAGENGEAETPIQAEVDYDVVLDQAGFDAWLKKLEEAELIAFDTETTSIDAQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAVLRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAYDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAGKGAKQLTFDQIAIEQAGPYAAEDADVTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKMVALERQAYDLAGQEFNLGSPKQLGAILYDKLGLPVLSKTATGQPSTAEAVLAELAEQDFELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEAQAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAINAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELVLEVREDLVEQVCEGIRPLMSGAATLDVPLVVEAGVGSNWDEAH
>NZ_CP041008.1|WP_003096980.1|5804777_5805425_-|YihA-family-ribosome-biogenesis-GTP-binding-protein
MSEKNPIVGLCQKASFLISAAQVDQCPPDEGLEVAFAGRSNAGKSSALNTLTHANLARTSKTPGRTQLLNFFALDDSRRLVDLPGYGYAKVPIPLKQHWQRHLEAYLSSRASLAGVFLMMDIRHPLTDFDRLMLDWAQASQLPIHVLMTKADKLAFGAAKNALLKVRREVQQGWGDVATLQLFSAPKRQGVDEAQMVLAQWLGLLDEEQEAFEEA
>NZ_CP041008.1|WP_003096979.1|5805608_5805902_+|cytochrome-c5-family-protein
MKKLLLAATVVAVAVTAQAAQDPEAVFNRTCGACHDGQLPMAPKKGDHAAWEPRLAKGMPTLVQHVTNGFNAMPPRGLCTDCSAEDYQATIQWMVKK
>NZ_CP041008.1|WP_003102831.1|5805947_5806553_+|cytochrome-c4
MNKLLVSLLLTLGLTGLAHAAGDAAAGQAKAAVCGACHGADGNSPAPNFPKLAGQGERYLLKQMHDIKDGKRTVLEMTGLLTNLSDQDLADIAAYFASQKMSVGMADPNLVAQGEALFRGGKIAEGMPACTGCHSPSGVGIATAGFPHLGGQHATYVAKQLTDFREGTRTNDGDTKIMQSIAAKLSNKDIAAISSYIQGLH
>NZ_CP041008.1|WP_003096976.1|5806720_5807356_+|thiol:disulfide-interchange-protein-DsbA/DsbL
MRNLILTAMLAMASLFGMAAQADDYTAGKEYVELSSPVPVSQPGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALFGGIWNVHGQMFLTLESMGVEHDVHNAVFEAIHKEHKKLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVVNGKYRFDIGSAGGPEETLKLADYLIEKERAAAKK
>NZ_CP041008.1|WP_003096975.1|5807371_5808250_+|endonuclease/exonuclease/phosphatase-family-protein
MLRRWQREPRVAGSCDPRVNPSCDDSRELPDDGRLRLLSFNIQVGISTERYRHYLTRGWQHLLPHAGRATNLKRIGELLADYDLVALQEADGGSLRSGYVNQVEHLAQLGAFPYWYQQLNRNLGRIAQHSNGLLSRWRPTLLEDHPLPGPPGRGAIFVRFGEGADALVVVMMHLALGARTRTRQLAYIRELIGDYRHQVLMGDMNTHAVDLLENSPLRDLGLMAPQVEATFPSWRPQRNLDHILLSSDLALERVDVLDQPISDHLPVSVEIRLPDNLRDKALVVRGDAGSPP
>NZ_CP041008.1|WP_003114121.1|5808246_5810262_+|diguanylate-cyclase
MSRDDVQRWKDKYLENIEQQERLQRRWDARIDLLRRGLVRSSLAAEGSDKAVDQCMKELREILRRDDMDAGLSGLIPRLEKAVLDSEQRRQQRTQQNIDALGELAQQLLALDLPRELRKPLKQFARDIEERARQSREIPILLSELSRLQRQALAERKGGDAEDGRPSLLQRLFGGKESETTAEPSASVPSVVAASNTPIQPAAAAPSLPVAEHDEAPGGPPQPLPARTVAAIESAPAGWVGVAERGEPNQILLDEPREIWLDSLPLPAGLSFSETLEEAGAEPSPAMPADVESAPEAPATPVDNLDGQAVDEAYELPPPIPEPGYSAVAPHIEASLLRLLDGLSLPSSHQPQAEALRERIDGSLNWYELVPVLDDLAVLVLSLADSGQRDFEEYLRQLNERLESFLGHLGDAHAGYTDVLDNARGFDQSLREQVSGLQASVQQATDLNSLKLAVDSRLNGLLASMDEHQREQAEHEQEVSGRLQALMERVNSMEQDAKAFHSHLEDQRQKALTDPLTGLPNRAALSERLEQEVARRHRDGGDLLLAVLDIDHFKRINDDFGHLAGDKVLKIIAGELRKRLRQADFIARFGGEEFVVLLPATSLEAGRQLLERLRAAIAACPFHFKGEPLSITCSAGITAFEGNEAGEAVFERADQALYRAKRAGRDRLEVA
>NZ_CP041008.1|WP_003102836.1|5810379_5810973_+|MarC-family-protein
MDMFGVAVLIFLVTDPFGNIAVFLAALKGVAPGRRLRVAFRELAFALGLLLLFLTLGEHILSGLGLSREATGIAGGIILFVIAMRLIFPSPQGLLGEVPDGEPLLVPLATPAVAGPSALAMLITLRTTFDGPLWELYLAVVLAWAATALILLQAAFLQRFLGPRGLTAIERLAGMLLIMLSVDMLLDNLRSVLHIAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP041008_1	1.2\|4049945\|51\|NZ_CP041008\|PILER-CR	4049945-4049995	51	NZ_CP041008.1	4051492-4051542	0	1.0
NZ_CP041008_1	1.2\|4049945\|51\|NZ_CP041008\|PILER-CR	4049945-4049995	51	NZ_CP041008.1	4051593-4051643	0	1.0

1. spacer 1.2|4049945|51|NZ_CP041008|PILER-CR matches to position: 4051492-4051542, mismatch: 0, identity: 1.0

cctcggcaggcgtttcggcggataacgcctggggcgttattcgccctaccg	CRISPR spacer
cctcggcaggcgtttcggcggataacgcctggggcgttattcgccctaccg	Protospacer
***************************************************

2. spacer 1.2|4049945|51|NZ_CP041008|PILER-CR matches to position: 4051593-4051643, mismatch: 0, identity: 1.0

cctcggcaggcgtttcggcggataacgcctggggcgttattcgccctaccg	CRISPR spacer
cctcggcaggcgtttcggcggataacgcctggggcgttattcgccctaccg	Protospacer
***************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041008_1	1.1\|4049841\|54\|NZ_CP041008\|PILER-CR	4049841-4049894	54	MK511017	Pseudomonas phage CF23, partial genome	32-85	4	0.926

1. spacer 1.1|4049841|54|NZ_CP041008|PILER-CR matches to MK511017 (Pseudomonas phage CF23, partial genome) position: , mismatch: 4, identity: 0.926

cagctcggcagaggctacggcggataacgcctgggggcgttattcgccctaccg	CRISPR spacer
ccccacagcagaggctacggcggataacgcctgggggcgttattcgccctaccg	Protospacer
*  * *.***********************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

482799 : 520608

Pseudomonas_phage(60.0%)

tRNA,coat,integrase

attL 481481:481540|attR 493560:493641

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
481481:481540	attL	NA	NA	NA	NA
WP_003113529.1\|482799_483849_-	serine/threonine protein kinase	G9BWE0	Planktothrix_phage	1.0e-61	50.0
WP_071557684.1\|483851_484952_-	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_003115921.1\|485487_485760_+	hypothetical protein	NA	NA	NA	NA
WP_033992920.1\|485971_486262_+	hypothetical protein	Q56VP7	Pseudomonas_phage	8.7e-56	97.9
WP_003115097.1\|486776_487211_+	hypothetical protein	Q56VP5	Pseudomonas_phage	1.2e-61	98.6
WP_003115096.1\|487227_487320_+	hypothetical protein	Q56VP4	Pseudomonas_phage	1.6e-08	96.7
WP_003115979.1\|487332_487584_+	hypothetical protein	NA	NA	NA	NA
WP_003125072.1\|487596_487845_+\|coat	phage coat protein B	Q56VP2	Pseudomonas_phage	2.0e-32	92.7
WP_078465338.1\|487980_489240_+	attachment protein	Q56VP1	Pseudomonas_phage	2.7e-53	57.9
WP_003114150.1\|489244_489601_+	DUF2523 domain-containing protein	Q56VP0	Pseudomonas_phage	7.9e-59	100.0
WP_003114151.1\|489604_490879_+	hypothetical protein	Q56VN9	Pseudomonas_phage	2.8e-199	87.1
WP_004352686.1\|491108_492401_+	hypothetical protein	Q56VN8	Pseudomonas_phage	1.8e-241	92.3
WP_003114691.1\|492397_493399_+\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	7.6e-75	46.8
WP_003099270.1\|493851_494952_-	redox-regulated ATPase YchF	NA	NA	NA	NA
493560:493641	attR	NA	NA	NA	NA
WP_003099278.1\|494992_495577_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_003099279.1\|495618_496233_-	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA
WP_003099281.1\|496349_497291_-	ribose-phosphate pyrophosphokinase	A0A1V0SHF7	Hokovirus	4.1e-46	35.4
WP_003099284.1\|497457_498306_-	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_003095005.1\|498307_498925_-	lipoprotein localization protein LolB	NA	NA	NA	NA
WP_004352693.1\|498929_500702_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_003095001.1\|500845_502114_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_003114692.1\|502131_503214_+	peptide chain release factor 1	A0A0S4KWG0	Pseudomonas_phage	5.6e-07	48.3
WP_003114694.1\|503215_504046_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_003114696.1\|504039_504798_+	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA
WP_003099300.1\|504787_505585_+	glutamate racemase	NA	NA	NA	NA
WP_003099307.1\|505718_506240_+	acyloxyacyl hydrolase	A0A2H4J0I5	uncultured_Caudovirales_phage	1.4e-59	69.8
WP_003114697.1\|506365_507811_-	deoxyribodipyrimidine photo-lyase	A0A167RC11	Powai_lake_megavirus	3.1e-45	27.8
WP_003094990.1\|507807_508707_-	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	8.5e-17	39.1
WP_003099314.1\|508716_509673_-	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA
WP_003114698.1\|509825_510809_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_003114699.1\|511222_512140_+	TIGR01777 family protein	NA	NA	NA	NA
WP_003099324.1\|512136_513159_+	ferrochelatase	NA	NA	NA	NA
WP_003099328.1\|513438_514812_+	MFS transporter	NA	NA	NA	NA
WP_003099330.1\|514813_515761_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_003114701.1\|515757_518130_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_003114703.1\|518146_518935_-	molecular chaperone	NA	NA	NA	NA
WP_003099337.1\|518953_519496_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_003146046.1\|519495_520029_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_003099340.1\|520059_520608_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_2

1009268 : 1016685

Pseudomonas_phage(100.0%)

coat,integrase

attL 1005234:1005260|attR 1017630:1017656

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1005234:1005260	attL	NA	NA	NA	NA
WP_010895517.1\|1009268_1009559_+	hypothetical protein	Q56VP7	Pseudomonas_phage	7.4e-55	96.9
WP_010895518.1\|1009562_1009940_+	hypothetical protein	Q56VP6	Pseudomonas_phage	9.9e-60	97.6
WP_003115132.1\|1010074_1010509_+	phage destabilizing protein	Q56VP5	Pseudomonas_phage	5.1e-60	86.1
WP_003115130.1\|1010525_1010618_+	hypothetical protein	Q56VP4	Pseudomonas_phage	7.3e-09	100.0
WP_003115979.1\|1010630_1010882_+	hypothetical protein	NA	NA	NA	NA
WP_003125072.1\|1010894_1011143_+\|coat	phage coat protein B	Q56VP2	Pseudomonas_phage	2.0e-32	92.7
WP_010895519.1\|1011278_1012541_+\|coat	phage coat protein A	Q56VP1	Pseudomonas_phage	6.7e-52	56.0
WP_003114150.1\|1012545_1012902_+	DUF2523 domain-containing protein	Q56VP0	Pseudomonas_phage	7.9e-59	100.0
WP_010895520.1\|1012905_1014180_+	hypothetical protein	Q56VN9	Pseudomonas_phage	2.1e-202	88.7
WP_003115206.1\|1014409_1015702_+	hypothetical protein	Q56VN8	Pseudomonas_phage	2.8e-247	94.2
WP_003114154.1\|1015701_1016685_+\|integrase	tyrosine-type recombinase/integrase	Q56VN7	Pseudomonas_phage	4.7e-93	52.6
1017630:1017656	attR	NA	NA	NA	NA

DBSCAN-SWA_3

3155863 : 3162757

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003090386.1\|3155863_3156532_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.5e-90	82.1
WP_003090387.1\|3156642_3157038_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.7e-47	72.1
WP_003090389.1\|3157034_3157394_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.4e-34	61.7
WP_003090391.1\|3157393_3157699_+	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_003119979.1\|3157695_3158031_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.5e-38	69.4
WP_003108776.1\|3158027_3159011_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	9.3e-142	74.3
WP_003097628.1\|3159098_3160073_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_003113366.1\|3160077_3161475_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_003097631.1\|3161476_3162757_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.2e-98	45.4

DBSCAN-SWA_4

4259627 : 4268656

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003092260.1\|4259627_4260668_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.5e-113	59.5
WP_003092262.1\|4260801_4261308_-	CinA family protein	B5TK85	Pseudomonas_phage	8.1e-57	76.0
WP_003113874.1\|4261455_4262463_+	TolB family protein	NA	NA	NA	NA
WP_003113873.1\|4262588_4265156_+	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	3.2e-24	22.1
WP_003092272.1\|4265222_4265546_+	ferredoxin family protein	NA	NA	NA	NA
WP_003113871.1\|4265972_4266977_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	7.0e-36	37.3
WP_003115226.1\|4267081_4267975_-	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	3.0e-06	34.3
WP_003098558.1\|4268020_4268656_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.0e-40	52.3

DBSCAN-SWA_5

5002338 : 5050704

Pseudomonas_phage(44.44%)

tRNA,plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003113167.1\|5002338_5003538_-\|tRNA	tyrosine--tRNA ligase	NA	NA	NA	NA
WP_003129241.1\|5003822_5005166_+	peptidoglycan DD-metalloendopeptidase family protein	O03937	Lactobacillus_phage	3.0e-18	44.1
WP_003113168.1\|5005168_5006260_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_003085254.1\|5006313_5006664_-	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	3.0e-26	53.2
WP_003120826.1\|5006741_5007164_-	polymer-forming cytoskeletal protein	NA	NA	NA	NA
WP_003085249.1\|5007164_5007884_-	hypothetical protein	NA	NA	NA	NA
WP_003113169.1\|5007883_5008918_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_003113170.1\|5009208_5009631_+	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA
WP_003085244.1\|5009647_5010616_+	nitronate monooxygenase	NA	NA	NA	NA
WP_003113171.1\|5010737_5011814_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_003113172.1\|5011874_5012675_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_003113173.1\|5012714_5014196_-	AAA family ATPase	U5XJW0	Phormidium_phage	6.0e-68	34.0
WP_003085225.1\|5014274_5014613_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_003085224.1\|5014712_5015360_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA
WP_003101641.1\|5015414_5016209_-	adenosylmethionine decarboxylase	NA	NA	NA	NA
WP_003085219.1\|5016528_5016951_-	OsmC family protein	NA	NA	NA	NA
WP_096067548.1\|5017222_5017867_+	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA
WP_003113174.1\|5017928_5018765_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.1e-70	56.9
WP_003085203.1\|5018761_5019811_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.8e-111	57.8
WP_003113175.1\|5019812_5020418_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.6e-75	66.3
WP_003113176.1\|5020836_5021067_-	hypothetical protein	C8ZKF3	Pseudomonas_phage	8.2e-25	71.6
WP_003113177.1\|5021063_5021366_-	hypothetical protein	A0A0H5B141	Pseudomonas_phage	4.4e-34	71.0
WP_003113178.1\|5021365_5022418_-	hypothetical protein	A0A0H5AXZ9	Pseudomonas_phage	4.6e-62	52.2
WP_010895513.1\|5022513_5022744_-	hypothetical protein	A0A1W6JT87	Pseudomonas_phage	3.3e-18	62.7
WP_003113180.1\|5022724_5023060_-	hypothetical protein	NA	NA	NA	NA
WP_003115342.1\|5023059_5024151_-	hypothetical protein	A0A0S2SY45	Pseudomonas_phage	1.3e-46	36.9
WP_003118927.1\|5024174_5024963_-	hypothetical protein	NA	NA	NA	NA
WP_003113182.1\|5025198_5028813_-\|tail	phage tail protein	A0A0S2SYC5	Pseudomonas_phage	0.0e+00	54.7
WP_003113183.1\|5028871_5029474_-\|tail	tail assembly protein	A0A1V0E8A0	Vibrio_phage	2.2e-53	57.8
WP_003113184.1\|5029528_5030299_-	hypothetical protein	A0A2D1GNP8	Pseudomonas_phage	4.2e-81	55.6
WP_003113185.1\|5030301_5030997_-\|tail	phage minor tail protein L	A0A1B0VNE0	Pseudomonas_phage	9.7e-69	49.8
WP_003113186.1\|5031004_5031346_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	1.4e-17	40.0
WP_003113187.1\|5031338_5033174_-\|tail	phage tail tape measure protein	A0A0S2SYD9	Pseudomonas_phage	1.2e-28	36.2
WP_003113188.1\|5033220_5033475_-	hypothetical protein	A0A2H4PI34	Pseudomonas_phage	6.3e-10	38.4
WP_003113189.1\|5033504_5033852_-	hypothetical protein	NA	NA	NA	NA
WP_003113190.1\|5033863_5034358_-	hypothetical protein	A0A286S1Q8	Klebsiella_phage	1.4e-45	56.5
WP_003118919.1\|5034673_5034931_-	hypothetical protein	A0A125RNP3	Pseudomonas_phage	8.3e-18	64.6
WP_003118918.1\|5034927_5035290_-	hypothetical protein	H2BDA0	Pseudomonas_phage	1.9e-15	47.9
WP_003113192.1\|5035286_5035916_-	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	1.6e-86	78.0
WP_003113193.1\|5035948_5036938_-	phage late control D family protein	A0A2H4JBF6	uncultured_Caudovirales_phage	7.5e-107	55.8
WP_003101635.1\|5036995_5037202_-	hypothetical protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	2.3e-18	64.2
WP_003113194.1\|5037176_5038049_-	hypothetical protein	A0A2H4J875	uncultured_Caudovirales_phage	2.5e-74	51.4
WP_003113195.1\|5038058_5040296_-	hypothetical protein	NA	NA	NA	NA
WP_003085178.1\|5040465_5040810_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_003085175.1\|5040824_5041328_-\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	8.0e-65	73.5
WP_003113197.1\|5041340_5042501_-\|tail	phage tail sheath family protein	Q38068	Phage_PS17	2.0e-188	83.2
WP_010895512.1\|5042543_5043002_-	hypothetical protein	NA	NA	NA	NA
WP_003113198.1\|5042998_5045074_-	bacteriophage protein	Q9ZXK6	Pseudomonas_virus	5.1e-198	50.2
WP_010895511.1\|5045075_5045609_-\|tail	phage tail protein I	Q9ZXK7	Pseudomonas_virus	3.0e-62	64.6
WP_003085151.1\|5045601_5046489_-	bacteriophage protein	S4TNY7	Salmonella_phage	5.3e-88	59.8
WP_003113199.1\|5046485_5046812_-	bacteriophage protein	A0A2H4JA09	uncultured_Caudovirales_phage	2.4e-30	60.2
WP_003085141.1\|5046964_5047522_-\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	4.6e-45	71.1
WP_003113200.1\|5047518_5048034_-	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	4.1e-32	42.9
WP_003118908.1\|5048055_5048505_-	hypothetical protein	B5TK61	Pseudomonas_phage	5.0e-26	53.3
WP_003113201.1\|5048868_5049228_-	hypothetical protein	NA	NA	NA	NA
WP_003085132.1\|5049275_5049476_-	repressor PtrB	W6ATC1	Enterobacter_phage	3.7e-05	58.3
WP_003113202.1\|5049933_5050704_+	helix-turn-helix transcriptional regulator	A0A1B0Z078	Pseudomonas_phage	1.4e-71	59.1

DBSCAN-SWA_6

5615665 : 5669773

Moumouvirus(25.0%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003104969.1\|5615665_5616712_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_003115055.1\|5616675_5618535_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_003104971.1\|5618531_5619041_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_003119488.1\|5619042_5619888_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_003083670.1\|5620055_5620544_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_003111626.1\|5620619_5622116_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_003083666.1\|5622128_5622647_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_003115054.1\|5622735_5623770_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_003147054.1\|5624137_5625631_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_003083660.1\|5625675_5626140_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_003115052.1\|5626155_5627490_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_003115051.1\|5627496_5628846_+	DotU family type VI secretion system protein	NA	NA	NA	NA
WP_003106968.1\|5628842_5632373_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_003106966.1\|5632369_5633050_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_003106965.1\|5633059_5633788_+	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_003147051.1\|5633795_5636894_+	protein kinase	M1PCM5	Moumouvirus	2.5e-23	27.8
WP_003114657.1\|5636890_5637610_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.1e-18	36.3
WP_003083634.1\|5637609_5638809_+	ABC transporter permease	NA	NA	NA	NA
WP_003106615.1\|5638801_5640514_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	NA	NA	NA	NA
WP_003106614.1\|5640575_5641490_+	hypothetical protein	NA	NA	NA	NA
WP_003083628.1\|5641719_5642778_-	PA0069 family radical SAM protein	NA	NA	NA	NA
WP_003083624.1\|5642866_5643142_-	YheV family putative metal-binding protein	NA	NA	NA	NA
WP_003114658.1\|5643138_5645184_-	oligopeptidase A	NA	NA	NA	NA
WP_003083618.1\|5645261_5645804_+	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_003114659.1\|5645796_5646462_+	HAD family hydrolase	NA	NA	NA	NA
WP_003114660.1\|5646494_5647478_+	hypothetical protein	NA	NA	NA	NA
WP_003118564.1\|5647485_5648613_-	hypothetical protein	NA	NA	NA	NA
WP_003083614.1\|5648704_5649121_+	hypothetical protein	NA	NA	NA	NA
WP_003083612.1\|5649177_5649615_+	hypothetical protein	NA	NA	NA	NA
WP_003114662.1\|5649626_5649860_-	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_003118563.1\|5649970_5650426_-	OsmC family protein	NA	NA	NA	NA
WP_003114663.1\|5650509_5651214_-	DsbA family protein	NA	NA	NA	NA
WP_003083599.1\|5651276_5652164_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_003083596.1\|5652271_5653192_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003083593.1\|5653257_5653764_+	DUF1993 family protein	NA	NA	NA	NA
WP_003111523.1\|5653802_5654351_+	RNA 2'-phosphotransferase	A0A2R2ZGT8	Clostridioides_phage	6.1e-34	41.6
WP_003083588.1\|5655277_5655706_+	cupin domain-containing protein	NA	NA	NA	NA
WP_003114665.1\|5655758_5657591_-	asparagine synthase (glutamine-hydrolyzing)	A0A2K9R7N5	Dishui_lake_phycodnavirus	2.7e-17	28.3
WP_003083582.1\|5658414_5658555_-	hypothetical protein	NA	NA	NA	NA
WP_003114581.1\|5659164_5660826_+	hypothetical protein	NA	NA	NA	NA
WP_003083575.1\|5661107_5661491_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003114582.1\|5661505_5662171_-	DUF799 domain-containing protein	NA	NA	NA	NA
WP_003083569.1\|5662167_5662521_-	DUF4810 domain-containing protein	NA	NA	NA	NA
WP_003111706.1\|5662551_5663238_-	hypothetical protein	NA	NA	NA	NA
WP_003114583.1\|5663734_5665108_-	T3SS effector bifunctional cytotoxin exoenzyme T	NA	NA	NA	NA
WP_003128157.1\|5665299_5666682_+	MgtC/SapB family protein	NA	NA	NA	NA
WP_003114584.1\|5666952_5667348_-	hypothetical protein	NA	NA	NA	NA
WP_003114585.1\|5667446_5667725_-\|transposase	transposase	NA	NA	NA	NA
WP_071557682.1\|5667819_5668140_-	hypothetical protein	NA	NA	NA	NA
WP_071536118.1\|5668568_5668805_-	hypothetical protein	NA	NA	NA	NA
WP_003114586.1\|5669071_5669773_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041008

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection