CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041012	Enterococcus faecalis strain FDAARGOS_611 chromosome, complete genome	2 crisprs	csa3,cas3,DEDDh,DinG,cas14j,csn2,cas2,cas1	1	13	6	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041012_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041012_1

1338647-1339012

Orphan

II-A,II-B

Consensus_repeat	Method
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACAAAA	PILER-CR
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	CRISPRCasFinder
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	CRT

5 spacers

The CRISPR arrays of NZ_CP041012_1

>merge|NZ_CP041012|1|1338647-1339012|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACAAAATAAATGGAACTCATAGTAAGAGGGTTGTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACAAAAACATTAAGAGAAAAGATTATTATGCAGTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACGCTAATTTAAAGGCAAAGGCAAGAATAGAAGTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACTGGTGAAGATGTTGATTCTGGATTATCAAAGTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACTCAAGAAATTGCATTAAGTTCAAAAAATTTGTTTTAGAGCCATGTTGTTAAAAAACAAACTATCAC

>NZ_CP041012|1|1|1338647-1338814|PILER-CR
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACAAAA	TAAATGGAACTCATAGTAAGAGGGTT
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACAAAA	ACATTAAGAGAAAAGATTATTATGCA
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC

>NZ_CP041012|1|1|1338647-1339012|CRISPRCasFinder
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	AAAATAAATGGAACTCATAGTAAGAGGGTT
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	AAAAACATTAAGAGAAAAGATTATTATGCA
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	GCTAATTTAAAGGCAAAGGCAAGAATAGAA
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	TGGTGAAGATGTTGATTCTGGATTATCAAA
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	TCAAGAAATTGCATTAAGTTCAAAAAATTT
GTTTTAGAGCCATGTTGTTAAAAAACAAACTATCAC

>NZ_CP041012|1|1|1338647-1339012|CRT
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	AAAATAAATGGAACTCATAGTAAGAGGGTT
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	AAAAACATTAAGAGAAAAGATTATTATGCA
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	GCTAATTTAAAGGCAAAGGCAAGAATAGAA
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	TGGTGAAGATGTTGATTCTGGATTATCAAA
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	TCAAGAAATTGCATTAAGTTCAAAAAATTT
GTTTTAGAGCCATGTTGTTAAAAAACAAACTATCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041012.1\|WP_002356966.1\|1334963_1335329_+\|DUF1033-family-protein	unknown	unknown	gnl\|CDD\|336361
NZ_CP041012.1\|WP_002356974.1\|1339418_1340837_+\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
NZ_CP041012.1\|WP_002356963.1\|1333648_1334164_-\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	unknown	unknown	gnl\|CDD\|176643
NZ_CP041012.1\|WP_002364368.1\|1343581_1345348_+\|thiol-reductant-ABC-exporter-subunit-CydC	unknown	unknown	gnl\|CDD\|227320
NZ_CP041012.1\|WP_002360016.1\|1346529_1347435_+\|prenyltransferase	unknown	unknown	gnl\|CDD\|235695
NZ_CP041012.1\|WP_002356979.1\|1345427_1346408_-\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NZ_CP041012.1\|WP_002356965.1\|1334296_1334866_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379115
NZ_CP041012.1\|WP_002356958.1\|1329306_1330452_+\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|224029
NZ_CP041012.1\|WP_002364369.1\|1341851_1343585_+\|thiol-reductant-ABC-exporter-subunit-CydD	unknown	unknown	gnl\|CDD\|274323
NZ_CP041012.1\|WP_002364371.1\|1337625_1338489_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP041012.1\|WP_002364367.1\|1348988_1351412_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|224588
NZ_CP041012.1\|WP_002385814.1\|1335291_1337541_+\|DNA-topoisomerase-III	unknown	unknown	gnl\|CDD\|236078
NZ_CP041012.1\|WP_002356983.1\|1351541_1352243_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_CP041012.1\|WP_002360017.1\|1347463_1348675_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224172
NZ_CP041012.1\|WP_002356976.1\|1340833_1341847_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|376764
NZ_CP041012.1\|WP_002356962.1\|1332393_1333632_-\|multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|340949
NZ_CP041012.1\|WP_002356957.1\|1328175_1329150_+\|ribose-phosphate-diphosphokinase	unknown	unknown	gnl\|CDD\|235039
NZ_CP041012.1\|WP_002381711.1\|1352360_1353110_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NZ_CP041012.1\|WP_002356959.1\|1330519_1330864_+\|DUF1831-domain-containing-protein	unknown	unknown	gnl\|CDD\|370163
NZ_CP041012.1\|WP_002356960.1\|1331089_1332214_+\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664

Protein	Function_ID	Function_description	E-value
NZ_CP041012.1\|WP_002356966.1\|1334963_1335329_+\|DUF1033-family-protein	gnl\|CDD\|336361	pfam06279, DUF1033, Protein of unknown function (DUF1033). This family consists of several hypothetical bacterial proteins. Many of the sequences in this family are annotated as putative DNA binding proteins but the function of this family is unknown.	4.62165e-64
NZ_CP041012.1\|WP_002356974.1\|1339418_1340837_+\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	0
NZ_CP041012.1\|WP_002356963.1\|1333648_1334164_-\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	gnl\|CDD\|176643	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.	5.73504e-32
NZ_CP041012.1\|WP_002364368.1\|1343581_1345348_+\|thiol-reductant-ABC-exporter-subunit-CydC	gnl\|CDD\|227320	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].	0
NZ_CP041012.1\|WP_002360016.1\|1346529_1347435_+\|prenyltransferase	gnl\|CDD\|235695	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated.	8.82053e-105
NZ_CP041012.1\|WP_002356979.1\|1345427_1346408_-\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	7.02455e-80
NZ_CP041012.1\|WP_002356965.1\|1334296_1334866_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379115	pfam13305, WHG, WHG domain. This presumed domain is around 80 amino acids in length. It is found to the C-terminus of a DNA-binding helix-turn-helix domain. This domain may be involved in binding to an as yet unknown ligand that allows a transcriptional regulation response to that molecule. The domain is named WHG after three conserved residues near the C-terminus of the domain.	2.91104e-15
NZ_CP041012.1\|WP_002356958.1\|1329306_1330452_+\|cysteine-desulfurase	gnl\|CDD\|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	4.17386e-179
NZ_CP041012.1\|WP_002364369.1\|1341851_1343585_+\|thiol-reductant-ABC-exporter-subunit-CydD	gnl\|CDD\|274323	TIGR02857, transport_ATP-binding_protein, thiol reductant ABC exporter, CydD subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD.	0
NZ_CP041012.1\|WP_002364371.1\|1337625_1338489_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	7.37187e-27
NZ_CP041012.1\|WP_002364367.1\|1348988_1351412_+\|DNA-translocase-FtsK	gnl\|CDD\|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	7.68936e-175
NZ_CP041012.1\|WP_002385814.1\|1335291_1337541_+\|DNA-topoisomerase-III	gnl\|CDD\|236078	PRK07726, PRK07726, DNA topoisomerase 3.	0
NZ_CP041012.1\|WP_002356983.1\|1351541_1352243_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	5.36718e-38
NZ_CP041012.1\|WP_002360017.1\|1347463_1348675_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	1.24993e-121
NZ_CP041012.1\|WP_002356976.1\|1340833_1341847_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|376764	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II. This family consists of cytochrome bd type terminal oxidases that catalyze quinol-dependent, Na+-independent oxygen uptake. Members of this family are integral membrane proteins and contain a protohaem IX centre B558. One member of the family, Klebsiella pneumoniae CydB, is implicated in having an important role in micro-aerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae. The family forms an integral functional unit with subunit I, family Bac_Ubq_Cox, pfam01654.	9.60464e-103
NZ_CP041012.1\|WP_002356962.1\|1332393_1333632_-\|multidrug-efflux-MFS-transporter	gnl\|CDD\|340949	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli multidrug resistance protein MdtG, Streptococcus pneumoniae multidrug resistance efflux pump PmrA, and similar multidrug resistance (MDR) transporters from bacteria. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtG confers resistance to fosfomycin and deoxycholate. PmrA serves as an efflux pump for various substrates and is associated with fluoroquinolone resistance. MdtG-like MDR transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.18762e-174
NZ_CP041012.1\|WP_002356957.1\|1328175_1329150_+\|ribose-phosphate-diphosphokinase	gnl\|CDD\|235039	PRK02458, PRK02458, ribose-phosphate pyrophosphokinase; Provisional.	0
NZ_CP041012.1\|WP_002381711.1\|1352360_1353110_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	2.63593e-110
NZ_CP041012.1\|WP_002356959.1\|1330519_1330864_+\|DUF1831-domain-containing-protein	gnl\|CDD\|370163	pfam08866, DUF1831, Putative amino acid metabolism. Solution of the structure of the Lactobacillus plantarum protein from this family has indicated a potential new fold with remote similarities to TBP-like (TATA-binding protein) structures. This similarity, in combination with genomic context analysis, leads us to propose an involvement in amino-acid metabolism. The potentially novel fold is an alpha + beta fold comprising two beta sheets packed against a single helix. The enzyme is present in the cytosol.	1.33245e-53
NZ_CP041012.1\|WP_002356960.1\|1331089_1332214_+\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0

>NZ_CP041012.1|WP_002364371.1|1337625_1338489_+|AraC-family-transcriptional-regulator
MLANLNQAMDYIEEHLTEEVSFDELAKKTGISVYHFKRTFSFITGMSLAEYIKKRRLAEANLALLAGEKVTDVAFKYGYQSIEGFSRAFRDWSGQAPSEVMKTQIQKTFPKFSFYIDIKGGQSMDVKLIEKPAFQIVGVSQKVPLQYQGENQAIMELAQRITPQQRAEMHTFDDIYPHQVVNASFDFQEGRTTEGGEMTHMIGFATSQENTYEDLEQLSVPAHTWAVFPNEGPFPQTLQETWARIFSEWLPSSGYQVVAAPEISFTQYQGPAEAKYSEIWLAVTATK
>NZ_CP041012.1|WP_002385814.1|1335291_1337541_+|DNA-topoisomerase-III
MAKQNSANGKLFETHEFKEKPQGIFFKLFFYSRNLEKIEPIFGIIRKDSTQKGAKLVVAKQLIIAEKPSVAKDLSRVLGANQKNKNYYEGPNVIVTWALGHLLGLKMPEDLNKEWQTWQMETLPMIPKNLGIKPLPKTGHQLKAIKQLANRKDVSEAVIATDAGREGELVARWILEYVRFNKPVKRLWISSQTDKAIKDGFKKIRPAKDYDNLYYSALARAKADWLVGLNVTRALTVKYQDNLSAGRVQTPTLAMVRQQEKTIEQFKPQTYFTISLTVESEKAKMTQKNPYALKERQEAEQLVKELSKQKGLVTDIQEKVKTENAPLPYDLTEIQREANQRFQFSAKKTLSLVQSLYETHKIVSYPRTDSKYLTTDMKGTMKERLQAIADFSPEVKGYLKNGAVVKQQKVFQNAKVTDHHGLIPTEQRPRYEKLSNDEQKIYQMIVQRFLGLFAEPNQTKQTKVTVAFGKETFVFHQNKVVVAGWKTTAEQPLSIVQWQKGMTVAPNFTINKELTSPPKPLTEGTLLGKMEKHSLGTPATRAEIIEKLIKSELMERTNSGLSVSAKGKQLLDLVNPSLVTPELTEKWEKSLEAIASGQQKSQLFLKDIEEDTKKLVREIKQSEKKYQDFSITQKKCPDCGSNLREKNTKDGKIYVCTNQECSYRRRKDPKVSNHRCPQCHKKMVIIEGKNGRSFKCKFCSITEKIPDKKERKQKMTKHEERRLMKKYSQPDEPEESALAQALKAAMNQE
>NZ_CP041012.1|WP_002356966.1|1334963_1335329_+|DUF1033-family-protein
MYQVITMYGDNEPWWFFDDWQEDIVQEKTFDNLTDAETYYVEVWQKLSQNYTYVNTKPNYLTAFWNDGEERWCEECDEDLQQYFGLALLENHHAVTFENKAEFTTISNHFGKTKFCKRKVI
>NZ_CP041012.1|WP_002356965.1|1334296_1334866_+|TetR/AcrR-family-transcriptional-regulator
MAKKRNLTKAKILESARNLAEELGVQQLTFQNLAVDLGIKYPSLYNHFKNIAEVKNALVDLLIQELNDALRRALVGKSGAEAIRIYAETYQQFAFENSAVYELLISVPKTQNQQLIEGIHETNQIILQLLAFYPFNNEERLHKSRELRSLIHGYITLRFLGYFQREEATPEESYRRMIEDFIASLEVAG
>NZ_CP041012.1|WP_002356963.1|1333648_1334164_-|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein
MHITNRSHLADRYGKRTSAEFLLHERPILSFPISLAAIPKEARYLSWELIDYDTIPLIGFPFIHWLAANVPVTNEIPEDFSRTALKPTIQGKNSLASPLGKQMIPALATETLPELTERYLGLSPRSGVHTYTLYVYATKNPLNLKEGFFANELHQALNDQLLAKAKFEFLY
>NZ_CP041012.1|WP_002356962.1|1332393_1333632_-|multidrug-efflux-MFS-transporter
MYELIKSKIFRPRQPWEKNLLVLWFGTFMAGIGFSLVMPFMPLYINTLGTFTHQQLNFWSGITFSSTFLVTTIVSPWWGRLADRKGRKLMLLRASLGMAIVISLMGAVTSVYQLIGLRLLQGVFSGYISNATALVATGTPKEKSGQVLGTLATGSVTGTLLGPLLGGVTASIFGYRPTFFITGTILLLVFVLSLVFVHEEFVPIEKNQAASGKQILKKLEHPHVILGMFITTLIIQASNNSISPIISLYIQQLLGGHGNVTLISGVIASIPGIATLIAAPRFGRLGDRIGSERILTIGLILAIFVYLPMAFVQNVWQLAMLRFLVGISDACLLPAVQTLITRYSPSDAAGRIFSYNQSFQATGNVIGPMIGSSVSAAFGYRGVFISTSCLVLINLLWVRRSTAELKKEKNDD
>NZ_CP041012.1|WP_002356960.1|1331089_1332214_+|tRNA-2-thiouridine(34)-synthase-MnmA
MADNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCTATEDYKDVAKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLGADYVATGHYAQVETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVRAIADRAGLATAKKKDSTGVCFIGEKNFKEFLSNYLPAKKGNMVTEDGEIKGQHDGLMYYTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVDTPMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFYDGMECLGGGLIDRAYQDEKELQYV
>NZ_CP041012.1|WP_002356959.1|1330519_1330864_+|DUF1831-domain-containing-protein
MAFTTTAAVEGSTVFYKVHPSAKRYTLKDNGFTETKSGNFQLIRSLDPTPQRNEGFKLKITITADLKELKMSITTANGLKPMNIFKNEQHEMSKEKYFFLMDGLISRGVLEKVE
>NZ_CP041012.1|WP_002356958.1|1329306_1330452_+|cysteine-desulfurase
MEPIYLDHAATTPLHPTVIQAMTENMQTTFGNPSSIHQFGRKAHGLLEEVRQTIAESLQAKPHEIIFNSGGTEGDNTAILAVAFSRQKEGKHIITTAIEHPAVLRTMEYLETLGFEVTYLPVNENGQISMDQFKKSLREETILVSMMYGNNEIGNRLPIAEVGAILKNHSAIFHTDAVQAYGSEVILPHELGIDLLSISAHKINGPKGVGFLFKSDAIQLPPLLHGGEQEEKRRAGTENLAGIIGMGTAVSLLTSAEKQARKTAYQSFQTIILKALEEANIDFSINGEPTNRLAHVLNLHLKGVPSDLLLMHLDLRGIAISTGSACTAGTVDPSHVLTAMYGENSSAIKESIRISFGYGNTPEEIATFSEVLVAVIQQLKK
>NZ_CP041012.1|WP_002356957.1|1328175_1329150_+|ribose-phosphate-diphosphokinase
MTENYQDDTLRIFSLNANRPLAEKIAASVGTELGKSTVRQFSDGEIQINIEESIRGDHVYIIQATNAPVNDHLMELLILIDALKRASAKTINVILPYYGYARQDRTAKPREPITAKLVANMLVEAGATRLLTLDLHTVQVQGFFDIPVDNLFTMPLFAHYYRQQALVGEEIVIVSPKNSGVQRARSLSEYLDATLAIVDHEEIDGVRQEGYVIGNVAGKKCILVDDILNTGQTLATAAEVLMKNGAQEVYACASHGLLSEGAKATLENAPIKEISITDSVYTTTDRQPATLNIISCAELMGEALLRIHENKPMSPLFRLEPKGE
>NZ_CP041012.1|WP_002356974.1|1339418_1340837_+|cytochrome-ubiquinol-oxidase-subunit-I
MFDIVTLARIQFAMTTVFHFFFVPFSIGLALVVAIMETMYVVKKEERYRKMAKFWGNIFLLSFAVGVVTGIIQEFQFGMNWSDYSRFVGDIFGAPLAVEALLAFFLESTFLGLWIFTWDKMNPKVHVTFIWLVVFGSMMSAFWILVANSFMQHPVGYVINNGRAEMVDFVAVISNPKVWYEFSHVIMGAFTLGGMAVAGMAAFQLLKKRDISFHKASMRIGLWVTLFGSIGVLLAGDLQMKALIEGQPMKFAAMEGAYEDSDDPAAWTLIAWADEREHKQVFGIDIPYMLSILSYNKLSGSVDGMDTVNKRLVEKYGDDKNYYPPVNTLFWSFRIMAGFGALMLLVAALGLFFTRKKKPSLYEKKWMLWIVALCTFAPFLANTTGWLVTELGRYPWTVYGLFTIEQSVSPNVSVASLITSNVIYFLLFAGLGSVMVYLVILELRKGPDYEAKKLAKENEPALDPFDKGVFGE
>NZ_CP041012.1|WP_002356976.1|1340833_1341847_+|cytochrome-d-ubiquinol-oxidase-subunit-II
MSTLQLLWFVLIGVLFSGFFFLEGFDFGVGMAVQTLAHNDDEKDQVVATIGPVWDGNEVWLLTAGGAMFASFPYWYASLFSGYYLILFTILFGLIIRGVSFEFRHNMPEGKRRRMWNWTLSIGSFLVPFFFGILFISLVQGMPLDANGNMHAQFTDYFNLFSIVGGVALTLLCYLHGMNYIALKTEGPIRERARNYAEILYGVLYVGLVVFAVLMYFKTDFYEKNFAVTLILTLAIVVLTVIANVGVFKRKEMLAFLASGLTLVVLVALLFSGLFPRVMIGSEGFDLLIKDATSTPYTLKIMTWISLSILPFVLAYTAWSYYIFRKRISQTAVPEGY
>NZ_CP041012.1|WP_002364369.1|1341851_1343585_+|thiol-reductant-ABC-exporter-subunit-CydD
MIDKDILQMPKIKKILVLLAGFSFLQAVFIIGQAFFLSKAIVGLWSGGHLNQQLQSILLFFIFYLGRHVITYFRERMLDTFSYERSKELREQLLTKIFRLGPNVVQKNGTGNMVTMALEGISQTENYLQLILTKMMNMMIIPWIILAFVFTQDIRSGVTLLIVFPIIIIFMIVLGYAAQSKADKQYAAFQMLSNHFIDSLRGIDTLKLFGLSKKYAGSIYHTSERFRKATMSTLKIAILSTFALDFFTTLSVAVVAVFLGLSLLNGTILLFPALVTLILAPEFFLPIRDFSSDYHATLDGKNSFQAIQAVLALPEAEQTDVLTLDDWHQESQLSVTALNFSYEDATQEAIQSLQFSVDGRKKIGIIGASGSGKSTLINLLSGFLLPTEETSQLAINGQTIPHFLQKDWQKQILYIPQAPYIFQDTLANNIRFYTPEATDEAIQQAIQLVGLDELVKDLPEGIHTLIGESGRMLSGGQAQRVALARAFVDQKRHVLLFDEPTAHLDIETEVEMKERMLPLMNNHLVFFATHRLHWMEEMDYILVMEKGQLVEQGTLAELIEKDGYYVQLMKQMRGGRQ
>NZ_CP041012.1|WP_002364368.1|1343581_1345348_+|thiol-reductant-ABC-exporter-subunit-CydC
MMEKQPTTKDVWKNDQWVRPFLKRYKKTLYFALLLGFLTFFSAGALMFTSGYLISRAASLPENILLIYIPIVLTRAFGIGRPVFRYVERLTSHNWVLKMTSDLRLKLYNVLEKDAIFFKTKYRTGDILGLLSEDINHIQNLYLRTIFPTVIAWILYIFLVIALGFFSWWFALCMLLMLGVVVFLLPLVSVLVNGARQEKHKYAKNELYQTLTDNILGVSDWVFSQRGSEFVARYETDEANVRALDEKMKQFNRGRDFVLQLLFGVIAIAVLAWTSVRFPGNHGGAANWIGAFVLTVFPLIDAFAPLPAAAQETTIYKDSIRRFNELPEGEDDSTEAPVQPNGTSLSIEHLSFAYENQAKKVLNDLSLTIPEKQKLAILGRSGSGKSTLASLIRGDLRPTSGEILLGNIPTEAFGETMTEYIGVMHQAPYLFRTTILNNIRIGREEASEAEVWAVLEKVGLKEMVTQLPEGLQTMVDEAGLRFSGGERHRLALARILLQDTPIVLLDEPTTGLDPITEQQLLETFFEALKDKTVIWITHHLQGVTLMDQVIFIEDGQLEMSGTPEELLATNAHYQKLYRIDRGISSFEE
>NZ_CP041012.1|WP_002356979.1|1345427_1346408_-|polyprenyl-synthetase-family-protein
MNTFWKSFPDVERSLTETCELIEQTLHTRNEDIEEALVTLARSGGKLLRPAFFFLFTQLGDEEKQEKQQLLKIAASLEILHMATLIHDDIIDDSPLRRGAVTIQSQYGKDVAVYTGDLLFTEFFTLIADAMNGSEFMKINAQGMKRLLLGELDQMSHRFDRRMSIPAYLRSVNGKTAELFSLSCLEGAYFGHSSKEVQRLAKRIGRHIGIAFQVYDDILDYTADTETLKKPALEDLSQGVYTLPLLFAYQAAPDVFSPYLDKGRAITLEEAAEVAALVNDYHGVTEAQAFAKKVTNKAITDIQQLPDGTAKETLLSLTELLLHRSF
>NZ_CP041012.1|WP_002360016.1|1346529_1347435_+|prenyltransferase
MNREIFFELVELKAKTASVLPFLLGICFSWYQYGRLHVGYVLIFFIAMFIFNMAVDILDNYNDYHHATEVHDYKEKTNIIGRENLSLPLIRKMIFWMILVSALMGIGLSFIVGWPLLIMGLYCYLIGIFYSSGPKPLSSLPLGEVFSGFTMGFMITLICVYINTFEVFNWSAANLWGIFLVALPNTCYIANLMLANNICDLEEDENNKRYTLVHYLGKASSLKLFVGLNTIAMLAILLAVGLGLTPPTMLLMLLTLPFVRKQTQALLKEQVKSKTFVCAVKILAVGATAQVLFFAIGLWWL
>NZ_CP041012.1|WP_002360017.1|1347463_1348675_+|NAD(P)/FAD-dependent-oxidoreductase
MNKKHVVILGAGYAGLKTLRELQKGAKDVEITLVDRNNYHYEATDLHEVAAGTQPAEKITYNIMDVVDEKMTTFIQGTVKTIDAATQTVALEDGQTINYDYLVVSLGFESESFGIPGVQEHALQMVDVKTALNVYEHIQEQMRQYKATQNEEFLKIVVCGAGFTGIELLGSLVENKPKFAEIAGVSADQIQIYCVEAVTRLLPMFNEKLANYGVQLLKDSAIHLLLGKPIKEIKPGAVVYQDNEAGDLAELSAKTIIWTTGVSGSHVVGDSGFEARRGRVMVQPDLTDANHSNVYIIGDCSAVMDTETNRPYPTTAQIALKMGAHAAKNIQAQLKGEATKPFSFKSQGSVCSVGNTRALGIVGKTDIKGYPASFMKKIIMNKALFETGGTKEMMAKGRFDLYH
>NZ_CP041012.1|WP_002364367.1|1348988_1351412_+|DNA-translocase-FtsK
MAQKRATNKKKSTTKKKTKKQQQQQERLNYMFLGLIFILFGVFGLFRLGFLGTLLANCLRLVVGNTFPFAAILLILYGLLVMIYGKDFPLKRGRPIFGAVLIYISVLLFFHAFMFRNVSGSQPDILGNTWEFLQSDLKANQVTQNVGGGMIGALLYQGTYFLVAQFGSYLIATLLLLAGIFLMSMWDFQQIVDHFQSIQDRLSHVSAKSQARQEEKEAKRAAKKEAKAAERQAKIEAAAQQKLQERERMEQAAAERLTKTPVETHQPMVEEPAAPTPVQIDSFQQQNQAMPVPPIAATKPQREQEEEAADEAGVLEFEISEEAEDRDYQLPPTDLLDTIQATDQSGEYEKIEKNIGVLEQTFKSFGVDAKVVKASLGPSVTKFEVQPAVGVKVSKIVNLTDDIALALAAKDVRMEAPIPGKSLIGIEVPNSAISTVSFRDIVEAQPSHPDKLLEVPLGRDISGMVQTADLSKMPHLLIAGSTGSGKSVAINGIITGILMQAKPHEVKLMMIDPKMVELNVYNGIPHLLTPVVTNPRKAAQALQKVVQEMEFRYEKFAATGVRNITGYNQLIQQKNAEDGENRPILPFIVVIVDELADLMMVASNEVEDAIIRLAQMARAAGIHMILATQRPSVDVITGIIKANVPSRMAFAVSSGTDSRTIIDTNGAEKLLGRGDMLFLPMGENKPIRIQGAFISDQEVERVVAFVTDQQEAEYQESMMPTDEPTTSGGGEAPQDELFEEAKNLVVEMQTASISLLQRRFRIGYNRAARLVDELEAHGVIGPSEGSKPRKVFLQAESEEAATETPEQ
>NZ_CP041012.1|WP_002356983.1|1351541_1352243_+|GntR-family-transcriptional-regulator
MRRKSVLYLEVADQIKEDILSGKYPVGTFLPTETELEEMFNVSKITIRRAIEMLATEEFVEKKSGRGTTVLSNRPYNKLSKAGTFTEFLNESGQKVTKKVLQVENLTLSKEMPAYQFLGEEVVHLSRLYLIDEQPYIYFNYYLPAAMKDVSLTEYKEESLYRLMDRHAIEIYKFEDRFEVATLTEAEQKMLQTTETTGLKRIRRSLSPTGRCVEYSEAIYNTKIHPYVIEYEA
>NZ_CP041012.1|WP_002381711.1|1352360_1353110_+|ABC-transporter-ATP-binding-protein
MLEVQNLKKVYGNEIKYEALKGINLTVQDGEFIGIMGPSGSGKSTLLNLLATIDSPTDGEILLNGKNPNNLNQEQIAKFRRTELGFVFQSFNLMPTLTVEENIILPLTLDGEKVSVMKRQLAELSERLGINHLLKKRIAEISGGQAQRVAVARAMIHHPQLLLADEPTGNLDTKSSKDVMGLLQQLNEEEAATILMVTHDPLAASYCKRIVFIKDGELIDEIVQNGNQKEFYDLIMVKLAEIEGVDNEF

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Crispr_ID: NZ_CP041012_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041012_2

2651653-2652282

TypeII-A

II-A,II-B

Consensus_repeat	Method
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	CRISPRCasFinder
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	CRT
GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAAC	PILER-CR

9 spacers

csn2,cas2,cas1

The CRISPR arrays of NZ_CP041012_2

>merge|NZ_CP041012|2|2651653-2652282|CRISPRCasFinder,CRT,PILER-CR
CGTATCTGCGAAAACTAAACAACATGACTCTAAAACATATGTAAATCATAATGAGCATTTACATTGGTTTTGGTACCATTCTAAACAACATGACTCTAAAACTGTTAATTTCCTCATTTCGTCTTGTTTTTAGTTTTGGTACCATTCTAAACAACATGACTCTAAAACGAAACTTGATGTGCTACACCTTTAGCCCCAGTTTTGGTACCATTCTAAACAACATGACTCTAAAACTTGCTTCAGAACTTCCATAGCTTTCTTGAAGTTTTGGTACCATTCTAAACAACATGACTCTAAAACCCACGCTCCGGCAATTTCCCGACAACTGATGTTTTGGTACCATTCTAAACAACATGACTCTAAAACACCATTGACAACAATATTCTTTTGTTGCACGTTTTGGTACCATTCTAAACAACATGACTCTAAAACGAAAGCGTTGTGTAATGTGTCCATTTCTTTGTTTTGGTACCATTCTAAACAACATGACTCTAAAACCGTACTAAAGATCATGTAATCTTACCAATCGTTTTGGTACCATTCTAAACAACATGACTCTAAAACATTTCACCTTCTGTTTTAGAAGCTGCTTTAGTTTTGGTACCATTCTAAACAACATGACTCTAAAAC

>NZ_CP041012|2|2|2651653-2652282|CRISPRCasFinder
CGTATCTGCGAAAACTAAACAACATGACTCTAAAAC	ATATGTAAATCATAATGAGCATTTACATTG
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	TGTTAATTTCCTCATTTCGTCTTGTTTTTA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	GAAACTTGATGTGCTACACCTTTAGCCCCA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	TTGCTTCAGAACTTCCATAGCTTTCTTGAA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	CCACGCTCCGGCAATTTCCCGACAACTGAT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	ACCATTGACAACAATATTCTTTTGTTGCAC
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	GAAAGCGTTGTGTAATGTGTCCATTTCTTT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	CGTACTAAAGATCATGTAATCTTACCAATC
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	ATTTCACCTTCTGTTTTAGAAGCTGCTTTA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC

>NZ_CP041012|2|2|2651653-2652282|CRT
CGTATCTGCGAAAACTAAACAACATGACTCTAAAAC	ATATGTAAATCATAATGAGCATTTACATTG
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	TGTTAATTTCCTCATTTCGTCTTGTTTTTA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	GAAACTTGATGTGCTACACCTTTAGCCCCA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	TTGCTTCAGAACTTCCATAGCTTTCTTGAA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	CCACGCTCCGGCAATTTCCCGACAACTGAT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	ACCATTGACAACAATATTCTTTTGTTGCAC
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	GAAAGCGTTGTGTAATGTGTCCATTTCTTT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	CGTACTAAAGATCATGTAATCTTACCAATC
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	ATTTCACCTTCTGTTTTAGAAGCTGCTTTA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC

>NZ_CP041012|2|2|2651719-2652282|PILER-CR
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	TGTTAATTTCCTCATTTCGTCTTGTTTTTA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	GAAACTTGATGTGCTACACCTTTAGCCCCA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	TTGCTTCAGAACTTCCATAGCTTTCTTGAA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	CCACGCTCCGGCAATTTCCCGACAACTGAT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	ACCATTGACAACAATATTCTTTTGTTGCAC
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	GAAAGCGTTGTGTAATGTGTCCATTTCTTT
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	CGTACTAAAGATCATGTAATCTTACCAATC
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC	ATTTCACCTTCTGTTTTAGAAGCTGCTTTA
GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041012.1\|WP_002364825.1\|2647549_2649067_-\|ABC-transporter-permease/substrate-binding-protein	unknown	unknown	gnl\|CDD\|270328
NZ_CP041012.1\|WP_002355504.1\|2658713_2658947_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041012.1\|WP_002358655.1\|2659091_2660507_-\|dipeptidase-PepV	unknown	unknown	gnl\|CDD\|130941
NZ_CP041012.1\|WP_002364832.1\|2652374_2653034_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
NZ_CP041012.1\|WP_002363150.1\|2649067_2650021_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224050
NZ_CP041012.1\|WP_002394646.1\|2643858_2644710_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP041012.1\|WP_002364822.1\|2639522_2640758_-\|DNA-repair-exonuclease	unknown	unknown	gnl\|CDD\|277319
NZ_CP041012.1\|WP_002361240.1\|2644833_2645388_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP041012.1\|WP_010820402.1\|2665549_2666119_-\|phospholipase/carboxylesterase	unknown	unknown	gnl\|CDD\|223477
NZ_CP041012.1\|WP_002364834.1\|2653360_2654227_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP041012.1\|WP_002355518.1\|2640913_2641255_-\|YlbF-family-regulator	unknown	unknown	gnl\|CDD\|237467
NZ_CP041012.1\|WP_002386142.1\|2645398_2646919_-\|phosphoglucomutase	unknown	unknown	gnl\|CDD\|215211
NZ_CP041012.1\|WP_002355509.1\|2646952_2647408_-\|arginine-repressor	unknown	unknown	gnl\|CDD\|224355
NZ_CP041012.1\|WP_002364833.1\|2653034_2653364_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP041012.1\|WP_002364839.1\|2664985_2665408_+\|cytidine-deaminase	unknown	unknown	gnl\|CDD\|223372
NZ_CP041012.1\|WP_002381241.1\|2650257_2651271_+\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|226122
NZ_CP041012.1\|WP_002355517.1\|2641317_2643504_-\|PBP1A-family-penicillin-binding-protein	unknown	unknown	gnl\|CDD\|273955
NZ_CP041012.1\|WP_002364837.1\|2661483_2663133_-\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240529
NZ_CP041012.1\|WP_002399438.1\|2663312_2664857_+\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L--lysine-ligase	unknown	unknown	gnl\|CDD\|237588
NZ_CP041012.1\|WP_002355501.1\|2660640_2661375_-\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108

Protein	Function_ID	Function_description	E-value
NZ_CP041012.1\|WP_002364825.1\|2647549_2649067_-\|ABC-transporter-permease/substrate-binding-protein	gnl\|CDD\|270328	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein ChoS of Lactococcus lactis is predicted to be involved in uptake of compatible solutes such as choline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ChoS belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.70713e-168
NZ_CP041012.1\|WP_002358655.1\|2659091_2660507_-\|dipeptidase-PepV	gnl\|CDD\|130941	TIGR01886, Beta-Ala-Xaa_dipeptidase, dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP041012.1\|WP_002364832.1\|2652374_2653034_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.31098e-118
NZ_CP041012.1\|WP_002363150.1\|2649067_2650021_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	2.40789e-140
NZ_CP041012.1\|WP_002394646.1\|2643858_2644710_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	1.10552e-91
NZ_CP041012.1\|WP_002364822.1\|2639522_2640758_-\|DNA-repair-exonuclease	gnl\|CDD\|277319	cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.06439e-49
NZ_CP041012.1\|WP_002361240.1\|2644833_2645388_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	5.85004e-26
NZ_CP041012.1\|WP_010820402.1\|2665549_2666119_-\|phospholipase/carboxylesterase	gnl\|CDD\|223477	COG0400, COG0400, Predicted esterase [General function prediction only].	2.1335e-16
NZ_CP041012.1\|WP_002364834.1\|2653360_2654227_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	2.59266e-115
NZ_CP041012.1\|WP_002355518.1\|2640913_2641255_-\|YlbF-family-regulator	gnl\|CDD\|237467	PRK13676, PRK13676, YlbF/YmcA family competence regulator.	2.56028e-37
NZ_CP041012.1\|WP_002386142.1\|2645398_2646919_-\|phosphoglucomutase	gnl\|CDD\|215211	PLN02371, PLN02371, phosphoglucosamine mutase family protein.	0
NZ_CP041012.1\|WP_002355509.1\|2646952_2647408_-\|arginine-repressor	gnl\|CDD\|224355	COG1438, ArgR, Arginine repressor [Transcription].	1.0984e-46
NZ_CP041012.1\|WP_002364833.1\|2653034_2653364_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.08189e-44
NZ_CP041012.1\|WP_002364839.1\|2664985_2665408_+\|cytidine-deaminase	gnl\|CDD\|223372	COG0295, Cdd, Cytidine deaminase [Nucleotide transport and metabolism].	9.64506e-24
NZ_CP041012.1\|WP_002381241.1\|2650257_2651271_+\|acyltransferase-family-protein	gnl\|CDD\|226122	COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism].	2.63008e-11
NZ_CP041012.1\|WP_002355517.1\|2641317_2643504_-\|PBP1A-family-penicillin-binding-protein	gnl\|CDD\|273955	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP041012.1\|WP_002364837.1\|2661483_2663133_-\|polysaccharide-biosynthesis-protein	gnl\|CDD\|240529	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins. The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	2.27874e-136
NZ_CP041012.1\|WP_002399438.1\|2663312_2664857_+\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L--lysine-ligase	gnl\|CDD\|237588	PRK14022, PRK14022, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase.	0
NZ_CP041012.1\|WP_002355501.1\|2660640_2661375_-\|rRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	3.32293e-92

>NZ_CP041012.1|WP_002381241.1|2650257_2651271_+|acyltransferase-family-protein
MENDKRIYKWDNVKLFLIFLVIFGHILDREASPSRLMETINFWIYSFHMPAFIFVSGLFSKHAIKQRKYLRLLSFVWLYLLAKLLITLANFAFANKMNFDLLNETGVPWYLLSLASFYLITIFLQRVQPKIMLPIIIVIGCASGYLPVEGFLSLGRTLGFFPFFYCGYLMDIQKLQTFLDHRKVKWAAIGVILSSFLFVNSQWSLATKFWGFLTGWASYAEISPAFEYSSFIQLFFYVAAALVSLSWFALLPKRKLPLSALGKDTLYPYLLHMPLIILLESGLQLDTLFKEWFTFRILALFFLALFILAITNMPVVKRGADYLFNPQSIMIPKKIYK
>NZ_CP041012.1|WP_002363150.1|2649067_2650021_-|ABC-transporter-ATP-binding-protein
MIKFQNVSKVYQENAVLSDVNLTIQQGEFFVLVGPSGSGKTTTLKMINRLIEPTTGEVALNEQAVTNYPLRELRLKIGYVLQQIALFPNLTVAENIELIPEMKKWPKEQRRERTIELLKKVQLDPEEYLHRKPAALSGGEQQRIGILRAIAAEPEVILMDEPFSALDPISRHHLQRLVKELHQELASTIVFVTHDMNEALLLGERICIMDAGKIIQVDTPEAIQKHPKNNFVGQFFKQSSPELANYCGADLTAFLEAADETIEPVPTVFMETNLKEIVQLINAQEKANLVEKQQVLGCITSKTITRFMEQLLESEGQ
>NZ_CP041012.1|WP_002364825.1|2647549_2649067_-|ABC-transporter-permease/substrate-binding-protein
MQALIETFFARKEEYLQALIEHMQLSFISLLFAALIAIPLAIYLTSHRKLAESLLQVTGIFQTIPSLALLGLLIPLIGIGRPPAIVALVIYALFPILQNTYTGLTEIDPSLEEAAEAFGMSKKEKLFKFELQMALPFIISGIRTATVLIIGTATLAALIGAGGLGTFILLGIDRNNLSLIFIGALSSAALAVLFNYGIHWLEKANGRRLIIGGTILGLLLGGSFFWNQQTSSKEKQLTIAGKLGAEPDIIINMYKALIEENSDIQVTLKPNFGKTTFLYNALKSDEIDLYPEFTGTVIETFLKNPPQLDNQPQVVYEAARAGLKKQENLTLLKPMRYENTYAVAVKRSFAKAHQLKTISDLQKISNQLKAGFTLEFIDRQDGYKGLQEKYHLNLNVQSMEPALRYQAINNGEVNVIDAYSTDSELKQYDLVTLEDDQALFPPYQGAPLIKTATLEKYPELAEILNKLAGKISEEEMSEMNYQVNVEGQDPSIVAKDYLKEKNLLK
>NZ_CP041012.1|WP_002355509.1|2646952_2647408_-|arginine-repressor
MKKAERQRLIKQLIMQQEIETQDELITRLEELGVRATQATVSRDIREMSIVKTHGADGRVKYAIFSQAQGTSSEEKLRESVKDSVVRMERVQFIVILHTEMGNADVVSNFLDEVAYPEVAGTVAGADTIIVITRSEEDAEHFIERIENMIF
>NZ_CP041012.1|WP_002386142.1|2645398_2646919_-|phosphoglucomutase
MVELKALQNGSDIRGIALDTEEQTATLTATAVAEIAVGVVRWLQDKKQLPRKAQQRLTIAIGHDSRLTAEPIKQALVDTFLSLGIQVIDVGLATTPAMFMATQFPTLQCDAAIMITASHLPYYFNGLKFFTAEGGAEKEDIRYILSHTDPLTANENGTLMKQELLPIYAEHLVAKIRQGIHSPEEKPLQGFRIIVDAGNGAGGFFAEQVLQVLGADTTGSQFLEPDGHFPNHVPNPDNSEAMKSIQTAVLANQADLGIIFDTDVDRSAVVDQSGEVLNRNNLIAVLAAIVLKEAPGSYIVTNSPTSSHLKTFIEEKGGQQIRYISGYRNVINKMIELNHGGFQTPLAIETSGHAAFQENYNLDDGAYVVAKILMLLPELKQNNQTLGDLIATLKQPAETNEFRFKITAEDVTCYGQQVLRDFELFVENQADFAVDRENQEGVRGNVSGQYGSGWFLLRLSLHEPLLVLQVENDQSDKNACVIEKIATFLQKYEEIDSQQIENNLGN
>NZ_CP041012.1|WP_002361240.1|2644833_2645388_-|GNAT-family-N-acetyltransferase
MENVLKGKHIGFSHFREEYIEHIAKQQWDNELLRHLSWDALHPWGLEEWKDFTINKGEDDRFLFAILENTTEKFIGWVSLSDVQLKNRGANLGIAILQKEQRGQGYGFEAVSLICKFAFYELGLHKIRLAVNSNNQKAIHVYEKVGFKKEGIDREALFQDGQWLDIYNYGILQKEWLQMIKAES
>NZ_CP041012.1|WP_002394646.1|2643858_2644710_+|RluA-family-pseudouridine-synthase
MRLPENFSTMTVKELLENEWLVPRKVRHFLRTRKNVKINGETAAFHFPVQAGDCVTLTFEETDYVRPTIHLGEATRVKVLYEDEHLMIVNKPYGIKTHPNQPQETDTLLNHVAAYLAEKNQVPYVVHRLDKETSGAIVFAKNPFVLPILGRLLETKQIYRQYQAIVAGHFNQKEQTINQPIGRDRHDRRKRRIDPQKGDSAITHVQVVQALSNNQTAVTCVLETGRTHQIRVHLASEGHPIIGDPLYNPKSQAARLMLHASQLHLLHPFTKKQIVVTAAPGLW
>NZ_CP041012.1|WP_002355517.1|2641317_2643504_-|PBP1A-family-penicillin-binding-protein
MDNLKQFFSKVGVGLRHFWTWIKPYLIQFHQARKRIWKKYQINKIFLLIGLVVALGASIYLFYLAKSANVETLKSGLSESTRVYDESGEEVGKLFGQKGTFVELDNISPYIQDAVISTEDRGFYQHKGYSIKGIARAVVGKLTFGKIGGGGGGSTITQQLAKNAYLTQEQTLDRKARELFLAIEIEKKYSKKDILAMYLNNSYFGNGVWGVQDAARKYFGVDASQVTVGEAATLAGMLKGPGIYNPIDYIDNATARRNTVLQLMVDNKKLSQEEANQEASVNLASLLNDTYVGDENSYKYPYYFDAVIDEAVNRYKFKEEDILNKGYKIYTSLNQKYQDAMDATYKNDALFPPNAEDGAMVQSGSVAIDPKTGGVQALVGGRGEHVYRGFNFATQTKRSPGSSLKPISVYTPALEAGYKPDSVLEDKPQDYYPAQNYSRTYSGEVPMYQALGESLNLPAVWLLHQIGLDKGYEKTEKFGIPLSEKDRYYGLALGGLQTGVSPLTMAGAYSAFANEGYKTETHLITKIVDSTGAIVVDNTKVKKEQVITKDVADGITSMLLGVFSSGSGVNAQPAGYVMAGKTGTTETNFDSSKTNDQWVIGYTPEVVIATWLGFQETSKTHYLEGSSATYASQVFNSQASGILPQVKQAQFPVADAYATGGKVVDSNDSLTGGANSNWRDNLKDFGNSVQDGASNFGDTLNEVGGQIKDGAKKVKDKIEGIFGGLLGN
>NZ_CP041012.1|WP_002355518.1|2640913_2641255_-|YlbF-family-regulator
MSNIYDTANQIERELRELDEFKALQAAYEEVKADEAAYTLFKEFQGFQQGLQEKQMRGEEFTDEDAEKAQSIATKVQETAVINELMQKEQAFSLVVNDLNRIIMTPVRDMYND
>NZ_CP041012.1|WP_002364822.1|2639522_2640758_-|DNA-repair-exonuclease
MKLLHTADLHMDRSFEGLTGIPTALAKRLREANQQLLMNIVTVAIREAVDLVIFAGDTFHQSQTSISMQAQLMAALEQLKQAEIPVILTFGNHDYYKKDRYWFSFPDNVFLFEKEMVETLYFETKAGEQVAVSGFSYEHPWIDENKALEFPIKQAESDIHIGIYHGDTSRKAQQNYAPFTWKDLKATGYNYWALGHIHQPQIVSEQPLIVYPGTPQGHTKKEQSLQGVAVVTLSQNQATVQFEKVAEIDWTNEEVSLAQCRDTQSVLSYLETSLLTKWHAHQQQQLMALTLKETQHLDVTVVQAIVNGELLSYLQQQLLQKTQGDFFVYRLILQAEEPTKEPIYLSASPNLLTALEKTYLDPVIFEDTTKELLRYPEFAGIFSMDEQWRLESLRLAHEQINEDFTIQEDPL
>NZ_CP041012.1|WP_002364832.1|2652374_2653034_-|type-II-A-CRISPR-associated-protein-Csn2
MRVNFSLLEEPIEIEKATFLTIKDVQTFAHLVKLIYQYDGENELKLFDAQQKGLKPTELFVVTDILGYDVNSAATLKLIYGDLEAQLNDKPEVKSMIEKLTGTISQLIGYELLEHEMDLEEDGITVQELFKALGIKIETTSDTIFEKVMEITQVHRYLSKKKLLIFINACTYLTEDEVQQVVEYISLNNVDVLFLEQRVVQNRFQYILDENFYLSYEKA
>NZ_CP041012.1|WP_002364833.1|2653034_2653364_-|CRISPR-associated-endonuclease-Cas2
MSYRYMRLLLMFDMPTDTASDRKAYRKFRKFLINEGFIMHQFSVYSKILLNDTANKAMLARLKQNNPQRGLITLLNVTEKQFSRMIYLHGEQDNRVANSDERIVFLGEE
>NZ_CP041012.1|WP_002364834.1|2653360_2654227_-|type-II-CRISPR-associated-endonuclease-Cas1
MGWRTVVVNKHSKLSYKNNHLVFKAIDHQELIHLSEIDVLLLETTDISLTTMLLKRLIDEKILVLFCDDKRLPIGKILPFYGRHDSSLQLTRQLAWTEERKGQVWTAIIAQKITNQSLHLAQRDYGQKAAALLAMRAELRLFDPANREGHAARSYFNTLFGNDFTREQENDINAGLNYGYTLLLSIFARELVQTGCFTQLGLKHANQFNDFNLASDLMEPFRPLVDQIIYENRKEAFPIMKRKLFALFMNTYMYKKKQMFLTNIATDYTKHVVKVLNQEEEGVPEFGI
>NZ_CP041012.1|WP_002355504.1|2658713_2658947_-|hypothetical-protein
MSETLIVNYLIKGRVKMNVEELVQKAKDLIGEGNVEHAQQFIEEHKDELGEHYHKITAMLADTTTDGLFDKIKGLFQ
>NZ_CP041012.1|WP_002358655.1|2659091_2660507_-|dipeptidase-PepV
MTIDWTKEVEARKDDLLEDLQNLLRINSERDDAQATPEAPFGPGPVAGLKHMLAYGERDGFTVKNVDNYAGHIEYGEGDETLGIFGHMDVVPAGDGWETDPYEPVIKDGKIYARGASDDKGPSMAAYYAMKIIKELGLPVSKKIRFVVGSDEESGWGDMDYYFQHEEAPDFGFSPDAEFPIINGEKGNVTIRLTFRGGNGADYKLESFKSGLRENMVPGTADAVVTAASADEAASLAASFETFIKQEAKISGNAELSDKTVTFHVVGKGAHGASPQSGINAATFLATFLNDYSFAEGAYSFINTIAEFIHEDFYGEKLGVAFEDEKMGKLTMNAGIVNFDPENPENSLVTLNFRYPKGTSAEELQAKVQATVGETVTATQGDRNQEPHYVPVDDPLVATLLQVYEDHTGEKGQEQIIGGGTYGRLLKRGVAYGAMFPGYTDTMHQANEFMELDDLFRAAAIYADAIYRLAK
>NZ_CP041012.1|WP_002355501.1|2660640_2661375_-|rRNA-pseudouridine-synthase
MRLDKFLADVGIGSRKEIKQLLKKKVVTVNGDVVKEAKTQVNEETDQIALMGEILTYQKFFYYMLHKPQGVISATEDQRDETVIDLLTDQDYRADLFPVGRLDKDTEGLLLLTNDGQLAHQLLSPKKHVDKEYLAEVEGLVTAEDCQLFAQGFALKDGEMVKPSRLVIETINEEEGTSVVRLVIQEGKFHQVKRMLATVGKPVTYLKRLRMGELWLDETLELGEYRPLTEAELQQLQPKQSYLN
>NZ_CP041012.1|WP_002364837.1|2661483_2663133_-|polysaccharide-biosynthesis-protein
MINQPNSVDQPILTNQEKMVKGSAWMTASNIISRMLGAIYIIPWYAWMGEHGNEANSLFSMGYTIYALFLMISTAGIPGAIAKQTSHYNSLNEYKISRQLFYRALQLMGGLGVVFAIVMYLASPALAALSGGGPELVPTMRSLSLAVLVFPSMSVIRGYFQGNQEMMPFALSQIVEQVARVFYMLLTAFIIMKVFEGNYVTAVTQATFAAFIGMLASFAVLGYYMYKQKPLFDYLEEHSANEHEIAPKELLIETFKEAIPFIVVGSGVTVFKLVDQFTFSNFMRLFTDYSDTQLRELFGIFNANPDKLTMIVVALATSISATGLPLITEAVTLKNHRELARLISNNLQLFVFVMLPATFGMIVLAQPLYTVFYMPDALGTSLLVQACYASLFLGLYMLVSNMLMGMYENRDAMRYLGIGLAVKLIVQFPAIRLFEVYGPLLATMIGFTVSCVLILRRIRQVTRFNYKLTLRRTLLMFCITVIMMIIALIFRQFLYLFLDPTRRFQAFIIVVIVAAAGGAFYGYSVLKIRLADRLLGKNAAKLRAKFNIK
>NZ_CP041012.1|WP_002399438.1|2663312_2664857_+|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L--lysine-ligase
MKRLEAKKVTISLFAIRDCLEKEDLLKEFISPEGWHLTLSDTLGQREVTALSYDSRDVTAETLFFCKGLNFKEIYLENAVKDGLEIYVSEVPYEVPAQLGIIVTDIKKAMAVLSMAFYDYPQNKLKLIGFTGTKGKTTAAYFTKYILDVATQQKTALLSTMNSTLDGKTFFKSALTTPESLDLYRMMATAVANGMTHFIMEVSSQAYKTNRVYKLFFDVGIFLNITPDHISPIEHPTFDDYFYCKRQLITHSKVIVLNHEADYFPLLKETAQHQKVPAIVYGSQPAPEVDYSFAVSSEDSLRFIVESPADALGLAGSYHLRLGGDFNKGNALSAAIASVLVGASKEECQQGIAATTVPGRMESLTNTNGATVYVDYAHNYDSLKNLLTFVREEHPDGRLIVLVGSTGDKAISRRKDFGRVLSELADVAVLTTDDPASEDPAKICQEIQAHITKEMPVYTVLDRGEAIAHALSLSTTADDAIVLAGKGADLYQKVNGVDEPYAGDFALAKMIIDK
>NZ_CP041012.1|WP_002364839.1|2664985_2665408_+|cytidine-deaminase
MDIWKKMYEYAKKEYHPQEVTPFIYTHHVVCALEAEDGQLFTGFCFESCCGVLDLCAERVAALNMYADSGQTVIKRIITFRDDVPNGISGMPCGACRELLLQLSPKNADTEILVDYQKREIVRLKELMPKWWGWSRYTND
>NZ_CP041012.1|WP_010820402.1|2665549_2666119_-|phospholipase/carboxylesterase
MKQFFQKGSKPNQLVVAFHGTGGNEYQLLTTIATLYPEASVLSYLGTEGVGEQRRFFAPLVNGALPRANFDERVTAFLEEVWQPQKLYDEVIFIGYSNGANFILGLLEKNPTIANTVILLHPSNLGYQYVSGEFATKVIVTTGAQDELSIPGQVLSLANQLKKHFPVDFLLVDGGHGLSEEVTKIKEVL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP041012_2	2.7\|2652085\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2652085-2652114	30	NZ_CP041012.1	1372583-1372612	2	0.933

1. spacer 2.7|2652085|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to position: 1372583-1372612, mismatch: 2, identity: 0.933

gaaagcgttgtgtaatgtgtccatttcttt	CRISPR spacer
gaaagtgttgtgtaatgtgtctatttcttt	Protospacer
*****.***************.********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041012_1	1.6\|1338881\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338881-1338910	30	KJ608188	Enterococcus phage EFC-1, complete genome	30144-30173	0	1.0
NZ_CP041012_2	2.3\|2651821\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2651821-2651850	30	MK721190	Enterococcus phage vB_EfaS_Ef6.4, complete genome	26991-27020	0	1.0
NZ_CP041012_2	2.7\|2652085\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2652085-2652114	30	GQ478085	Enterococcus phage phiFL2B, complete genome	14692-14721	0	1.0
NZ_CP041012_2	2.7\|2652085\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2652085-2652114	30	NC_013643	Enterococcus phage phiFL2A, complete genome	14103-14132	0	1.0
NZ_CP041012_1	1.1\|1338687\|26\|NZ_CP041012\|PILER-CR	1338687-1338712	26	CAJDKF010000002	Enterococcus phage vB_EfaS_159 genome assembly, contig: phage159-genome, whole genome shotgun sequence	25809-25834	1	0.962
NZ_CP041012_1	1.3\|1338683\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338683-1338712	30	CAJDKF010000002	Enterococcus phage vB_EfaS_159 genome assembly, contig: phage159-genome, whole genome shotgun sequence	25809-25838	1	0.967
NZ_CP041012_1	1.6\|1338881\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338881-1338910	30	GQ452243	Enterococcus phage phiEf11, complete genome	13775-13804	1	0.967
NZ_CP041012_2	2.3\|2651821\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2651821-2651850	30	MK721187	Enterococcus phage vB_EfaS_Ef6.1, complete genome	27427-27456	1	0.967
NZ_CP041012_2	2.7\|2652085\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2652085-2652114	30	GQ478087	Enterococcus phage phiFL3B, complete genome	15516-15545	1	0.967
NZ_CP041012_2	2.7\|2652085\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2652085-2652114	30	NC_013648	Enterococcus phage phiFL3A, complete genome	15210-15239	1	0.967
NZ_CP041012_2	2.7\|2652085\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2652085-2652114	30	GQ452243	Enterococcus phage phiEf11, complete genome	39497-39526	1	0.967
NZ_CP041012_2	2.7\|2652085\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2652085-2652114	30	NC_028671	Enterococcus phage vB_EfaS_IME197, complete genome	39141-39170	1	0.967
NZ_CP041012_1	1.2\|1338753\|26\|NZ_CP041012\|PILER-CR	1338753-1338778	26	LC547238	Entercoccus phage phiM1EF2 DNA, nearly complete genome	3565-3590	2	0.923
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	LC547238	Entercoccus phage phiM1EF2 DNA, nearly complete genome	3565-3594	2	0.933
NZ_CP041012_1	1.6\|1338881\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338881-1338910	30	NC_028671	Enterococcus phage vB_EfaS_IME197, complete genome	12684-12713	2	0.933
NZ_CP041012_2	2.3\|2651821\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2651821-2651850	30	MT119359	Enterococcus phage heks, complete genome	31812-31841	2	0.933
NZ_CP041012_2	2.3\|2651821\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2651821-2651850	30	MK125140	Enterococcus phage Nonaheksakonda, complete genome	28370-28399	2	0.933
NZ_CP041012_2	2.3\|2651821\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2651821-2651850	30	NC_042023	Enterococcus phage phiSHEF5, complete genome	14060-14089	2	0.933
NZ_CP041012_2	2.7\|2652085\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2652085-2652114	30	GQ478082	Enterococcus phage phiFL1B, complete genome	14692-14721	2	0.933
NZ_CP041012_2	2.7\|2652085\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2652085-2652114	30	GQ478083	Enterococcus phage phiFL1C, complete genome	14426-14455	2	0.933
NZ_CP041012_2	2.7\|2652085\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2652085-2652114	30	NC_013646	Enterococcus phage phiFL1A, complete genome	14445-14474	2	0.933
NZ_CP041012_1	1.2\|1338753\|26\|NZ_CP041012\|PILER-CR	1338753-1338778	26	NC_010180	Bacillus mycoides KBAB4 plasmid pBWB401, complete sequence	315572-315597	3	0.885
NZ_CP041012_1	1.2\|1338753\|26\|NZ_CP041012\|PILER-CR	1338753-1338778	26	NZ_CP020744	Bacillus mycoides strain Gnyt1 plasmid unnamed1, complete sequence	380691-380716	3	0.885
NZ_CP041012_1	1.2\|1338753\|26\|NZ_CP041012\|PILER-CR	1338753-1338778	26	CP037991	Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence	268025-268050	3	0.885
NZ_CP041012_1	1.2\|1338753\|26\|NZ_CP041012\|PILER-CR	1338753-1338778	26	MN693229	Marine virus AFVG_25M533, complete genome	24266-24291	4	0.846
NZ_CP041012_1	1.2\|1338753\|26\|NZ_CP041012\|PILER-CR	1338753-1338778	26	NZ_CP018939	Bacteroides fragilis strain Q1F2 plasmid Q1F2-p2, complete sequence	20089-20114	5	0.808
NZ_CP041012_1	1.2\|1338753\|26\|NZ_CP041012\|PILER-CR	1338753-1338778	26	NZ_CP018939	Bacteroides fragilis strain Q1F2 plasmid Q1F2-p2, complete sequence	73796-73821	5	0.808
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_KT186230	Bacillus anthracis strain P.NO2 plasmid pXO1, complete sequence	124479-124508	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP036355	Bacillus sp. SYJ plasmid unnamed1, complete sequence	142643-142672	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NC_014331	Bacillus cereus biovar anthracis str. CI plasmid pCI-XO1, complete sequence	124704-124733	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP022045	Bacillus anthracis strain FDAARGOS_341 plasmid unnamed1, complete sequence	61365-61394	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NC_007322	Bacillus anthracis str. 'Ames Ancestor' plasmid pXO1, complete sequence	124456-124485	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NC_012579	Bacillus anthracis str. CDC 684 plasmid pX01, complete sequence	124779-124808	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP015777	Bacillus anthracis strain Tangail-1 plasmid pXO1, complete sequence	124456-124485	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP018904	Bacillus anthracis strain Tyrol 4675 plasmid pXO1, complete sequence	124147-124176	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP023002	Bacillus anthracis strain 14RA5914 plasmid pX01, complete sequence	81539-81568	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_AP019732	Bacillus anthracis strain PCr plasmid PCr-pXO1	76013-76042	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_AP018444	Bacillus anthracis strain CZC5 plasmid pXO1, complete sequence	124378-124407	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP029324	Bacillus anthracis strain 17OD930 plasmid pXO1, complete sequence	99397-99426	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NC_012656	Bacillus anthracis str. A0248 plasmid pXO1, complete sequence	124720-124749	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NC_010934	Bacillus cereus strain G9241 plasmid pBCXO1, complete sequence	182567-182596	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP019589	Bacillus anthracis strain SPV842_15 plasmid pX01, complete sequence	124456-124485	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP010853	Bacillus anthracis strain A1144 plasmid pXO1, complete sequence	124438-124467	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP007665	Bacillus anthracis str. Vollum plasmid unnamed, complete sequence	77389-77418	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP008847	Bacillus anthracis strain HYU01 plasmid pX01, complete sequence	124701-124730	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP006743	Bacillus anthracis str. SVA11 plasmid pXO1, complete sequence	124613-124642	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_AP014834	Bacillus anthracis strain Shikan-NIID plasmid pXO1	124540-124569	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP029806	Bacillus anthracis strain London_499 plasmid pX01, complete sequence	123443-123472	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NC_001496	Bacillus anthracis virulence plasmid PX01, complete sequence	154749-154778	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NC_017726	Bacillus anthracis str. H9401 plasmid BAP1, complete sequence	124481-124510	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP014177	Bacillus anthracis strain Stendal plasmid pXO1, complete sequence	124456-124485	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP009597	Bacillus anthracis str. V770-NP-1R plasmid pXO1, complete sequence	98113-98142	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP009901	Bacillus anthracis strain 2002013094 plasmid pXO1, complete sequence	95611-95640	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP009340	Bacillus anthracis strain Ohio ACB plasmid 1, complete sequence	134225-134254	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP009696	Bacillus anthracis strain RA3 plasmid pXO1, complete sequence	72482-72511	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP009463	Bacillus anthracis strain SK-102 plasmid pXO1, complete sequence	118525-118554	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP009699	Bacillus anthracis strain BA1035 plasmid pXO1, complete sequence	81411-81440	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP009592	Bacillus cereus G9241 plasmid pBCX01, complete sequence	63937-63966	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP009543	Bacillus anthracis strain BA1015 plasmid pXO1, complete sequence	29325-29354	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP010321	Bacillus anthracis strain Canadian Bison isolate A0369 plasmid 1, complete sequence	10903-10932	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP009540	Bacillus anthracis str. Sterne plasmid pXO1, complete sequence	50970-50999	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP009330	Bacillus anthracis strain K3 plasmid 1, complete sequence	162296-162325	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP009324	Bacillus anthracis strain PAK-1 plasmid 1, complete sequence	75599-75628	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP009327	Bacillus anthracis strain Vollum 1B plasmid 1, complete sequence	168267-168296	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP001975	Bacillus anthracis str. A16R plasmid pXO1, complete sequence	124510-124539	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP009317	Bacillus cereus 03BB102 plasmid unnamed, complete sequence	19532-19561	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP009980	Bacillus anthracis strain Ames isolate BACI008 plasmid unnamed1, complete sequence	164957-164986	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP001971	Bacillus anthracis str. A16 plasmid pXO1, complete sequence	124541-124570	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NC_012473	Bacillus cereus 03BB102 plasmid p03BB102_179, complete sequence	117362-117391	5	0.833
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP047132	Bacillus anthracis str. BF1 plasmid pXO1, complete sequence	98517-98546	5	0.833
NZ_CP041012_1	1.7\|1338947\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338947-1338976	30	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	726854-726883	5	0.833
NZ_CP041012_2	2.3\|2651821\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2651821-2651850	30	MH375074	Enterococcus phage LY0323, complete genome	11789-11818	5	0.833
NZ_CP041012_2	2.3\|2651821\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2651821-2651850	30	MK982307	Enterococcus phage MSF2, complete genome	33836-33865	5	0.833
NZ_CP041012_2	2.3\|2651821\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2651821-2651850	30	KX284704	Enterococcus phage SANTOR1, complete genome	25134-25163	5	0.833
NZ_CP041012_1	1.2\|1338753\|26\|NZ_CP041012\|PILER-CR	1338753-1338778	26	NZ_CP045609	Bacillus cereus strain SB1 plasmid p3, complete sequence	6607-6632	6	0.769
NZ_CP041012_1	1.2\|1338753\|26\|NZ_CP041012\|PILER-CR	1338753-1338778	26	KT187252	Bacillus phage PBC6, complete genome	61427-61452	6	0.769
NZ_CP041012_1	1.2\|1338753\|26\|NZ_CP041012\|PILER-CR	1338753-1338778	26	MH487649	Bacillus phage BC01, complete genome	62238-62263	6	0.769
NZ_CP041012_1	1.7\|1338947\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338947-1338976	30	NC_019526	Enterobacteria phage vB_KleM-RaK2, complete genome	41998-42027	6	0.8
NZ_CP041012_1	1.7\|1338947\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338947-1338976	30	MT708547	Klebsiella phage Muenster, complete genome	164106-164135	6	0.8
NZ_CP041012_1	1.7\|1338947\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338947-1338976	30	AB897757	Klebsiella phage K64-1 DNA, complete genome	42006-42035	6	0.8
NZ_CP041012_2	2.1\|2651689\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	2651689-2651718	30	MK867354	Synechococcus phage S-SCSM1, complete genome	151260-151289	6	0.8
NZ_CP041012_2	2.2\|2651755\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2651755-2651784	30	NZ_CP015884	Enterococcus faecalis strain sorialis plasmid Efsorialis-p1, complete sequence	96068-96097	6	0.8
NZ_CP041012_2	2.4\|2651887\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2651887-2651916	30	KY290955	Aeromonas phage 65.2, complete genome	106696-106725	6	0.8
NZ_CP041012_2	2.4\|2651887\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2651887-2651916	30	NC_015251	Aeromonas phage 65, complete genome	106713-106742	6	0.8
NZ_CP041012_2	2.9\|2652217\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2652217-2652246	30	NZ_KJ776578	Clostridium botulinum strain CDC3875 plasmid pCDC3875, complete sequence	26197-26226	6	0.8
NZ_CP041012_2	2.9\|2652217\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2652217-2652246	30	NZ_KJ776580	Clostridium botulinum strain CDC5900 plasmid pCDC5900, complete sequence	31008-31037	6	0.8
NZ_CP041012_1	1.3\|1338683\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338683-1338712	30	NZ_CP046008	Escherichia coli strain 1919D62 plasmid p1919D62-2, complete sequence	85487-85516	7	0.767
NZ_CP041012_1	1.3\|1338683\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338683-1338712	30	NZ_CP046005	Escherichia coli strain 1919D3 plasmid p1919D3-2, complete sequence	66053-66082	7	0.767
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NC_010180	Bacillus mycoides KBAB4 plasmid pBWB401, complete sequence	315568-315597	7	0.767
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP020744	Bacillus mycoides strain Gnyt1 plasmid unnamed1, complete sequence	380687-380716	7	0.767
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	CP037991	Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence	268021-268050	7	0.767
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP049914	Vibrio sp. HDW18 plasmid p_unnamed1, complete sequence	287951-287980	7	0.767
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP012100	Bacillus thuringiensis strain HS18-1 plasmid pHS18-1, complete sequence	397880-397909	7	0.767
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	DQ003638	Listeria phage A511, complete genome	124863-124892	7	0.767
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	KJ668717	Listeria phage LMTA-34 hypothetical proteins, transposase domain-containing protein, and hypothetical proteins genes, complete cds	4155-4184	7	0.767
NZ_CP041012_2	2.4\|2651887\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2651887-2651916	30	MT490303	Prochlorococcus phage P-HS2, complete genome	16533-16562	7	0.767
NZ_CP041012_2	2.4\|2651887\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2651887-2651916	30	MN694626	Marine virus AFVG_250M967, complete genome	9439-9468	7	0.767
NZ_CP041012_2	2.4\|2651887\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2651887-2651916	30	NC_020847	Cyanophage MED4-184 genomic sequence	16533-16562	7	0.767
NZ_CP041012_2	2.4\|2651887\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2651887-2651916	30	JF974321	Cyanophage MED4-117 genomic sequence	13699-13728	7	0.767
NZ_CP041012_2	2.6\|2652019\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2652019-2652048	30	NZ_CP016597	Bacillus cereus strain K8 plasmid pBCK802, complete sequence	47444-47473	7	0.767
NZ_CP041012_2	2.7\|2652085\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2652085-2652114	30	MH179477	Aeromonas phage 60AhydR15PP, complete genome	151274-151303	7	0.767
NZ_CP041012_2	2.7\|2652085\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2652085-2652114	30	NC_014635	Aeromonas phage phiAS4, complete genome	51356-51385	7	0.767
NZ_CP041012_2	2.7\|2652085\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2652085-2652114	30	NC_020879	Aeromonas phage Aes012, complete genome	116920-116949	7	0.767
NZ_CP041012_2	2.7\|2652085\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2652085-2652114	30	NZ_CP025802	Yersinia ruckeri strain SC09 plasmid pLT, complete sequence	26191-26220	7	0.767
NZ_CP041012_2	2.9\|2652217\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2652217-2652246	30	NZ_CP014218	Clostridium botulinum strain B515 plasmid pRSJ21_3, complete sequence	9126-9155	7	0.767
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP045609	Bacillus cereus strain SB1 plasmid p3, complete sequence	6607-6636	8	0.733
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NC_015417	Clostridium botulinum BKT015925 plasmid p1BKT015925, complete sequence	171856-171885	8	0.733
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP018939	Bacteroides fragilis strain Q1F2 plasmid Q1F2-p2, complete sequence	20089-20118	8	0.733
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP018939	Bacteroides fragilis strain Q1F2 plasmid Q1F2-p2, complete sequence	73792-73821	8	0.733
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NC_007581	Clostridium phage c-st, complete genome	153252-153281	8	0.733
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	ACSJ01000017	Clostridium phage D-1873 CLG.Contig173, whole genome shotgun sequence	19923-19952	8	0.733
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	AP008983	Clostridium phage c-st genomic DNA, complete genome	153252-153281	8	0.733
NZ_CP041012_1	1.6\|1338881\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338881-1338910	30	NC_019909	Yersinia phage phiR1-RT complete genome	47802-47831	8	0.733
NZ_CP041012_1	1.6\|1338881\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338881-1338910	30	NC_028820	Yersinia phage vB_YenM_TG1, complete genome	45246-45275	8	0.733
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	64116-64145	9	0.7
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	33249-33278	9	0.7
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	215240-215269	9	0.7
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP029455	Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence	199858-199887	9	0.7
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	8439-8468	9	0.7
NZ_CP041012_1	1.4\|1338749\|30\|NZ_CP041012\|CRISPRCasFinder,CRT	1338749-1338778	30	NZ_CP013700	Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence	139454-139483	9	0.7

1. spacer 1.6|1338881|30|NZ_CP041012|CRISPRCasFinder,CRT matches to KJ608188 (Enterococcus phage EFC-1, complete genome) position: , mismatch: 0, identity: 1.0

tggtgaagatgttgattctggattatcaaa	CRISPR spacer
tggtgaagatgttgattctggattatcaaa	Protospacer
******************************

2. spacer 2.3|2651821|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to MK721190 (Enterococcus phage vB_EfaS_Ef6.4, complete genome) position: , mismatch: 0, identity: 1.0

gaaacttgatgtgctacacctttagcccca	CRISPR spacer
gaaacttgatgtgctacacctttagcccca	Protospacer
******************************

3. spacer 2.7|2652085|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to GQ478085 (Enterococcus phage phiFL2B, complete genome) position: , mismatch: 0, identity: 1.0

gaaagcgttgtgtaatgtgtccatttcttt	CRISPR spacer
gaaagcgttgtgtaatgtgtccatttcttt	Protospacer
******************************

4. spacer 2.7|2652085|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to NC_013643 (Enterococcus phage phiFL2A, complete genome) position: , mismatch: 0, identity: 1.0

gaaagcgttgtgtaatgtgtccatttcttt	CRISPR spacer
gaaagcgttgtgtaatgtgtccatttcttt	Protospacer
******************************

5. spacer 1.1|1338687|26|NZ_CP041012|PILER-CR matches to CAJDKF010000002 (Enterococcus phage vB_EfaS_159 genome assembly, contig: phage159-genome, whole genome shotgun sequence) position: , mismatch: 1, identity: 0.962

taaatggaactcatagtaagagggtt	CRISPR spacer
taaatggaactcatagcaagagggtt	Protospacer
****************.*********

6. spacer 1.3|1338683|30|NZ_CP041012|CRISPRCasFinder,CRT matches to CAJDKF010000002 (Enterococcus phage vB_EfaS_159 genome assembly, contig: phage159-genome, whole genome shotgun sequence) position: , mismatch: 1, identity: 0.967

aaaataaatggaactcatagtaagagggtt	CRISPR spacer
aaaataaatggaactcatagcaagagggtt	Protospacer
********************.*********

7. spacer 1.6|1338881|30|NZ_CP041012|CRISPRCasFinder,CRT matches to GQ452243 (Enterococcus phage phiEf11, complete genome) position: , mismatch: 1, identity: 0.967

tggtgaagatgttgattctggattatcaaa	CRISPR spacer
tggcgaagatgttgattctggattatcaaa	Protospacer
***.**************************

8. spacer 2.3|2651821|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to MK721187 (Enterococcus phage vB_EfaS_Ef6.1, complete genome) position: , mismatch: 1, identity: 0.967

gaaacttgatgtgctacacctttagcccca	CRISPR spacer
gaaacttgatatgctacacctttagcccca	Protospacer
**********.*******************

9. spacer 2.7|2652085|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to GQ478087 (Enterococcus phage phiFL3B, complete genome) position: , mismatch: 1, identity: 0.967

gaaagcgttgtgtaatgtgtccatttcttt	CRISPR spacer
gaaagtgttgtgtaatgtgtccatttcttt	Protospacer
*****.************************

10. spacer 2.7|2652085|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to NC_013648 (Enterococcus phage phiFL3A, complete genome) position: , mismatch: 1, identity: 0.967

gaaagcgttgtgtaatgtgtccatttcttt	CRISPR spacer
gaaagtgttgtgtaatgtgtccatttcttt	Protospacer
*****.************************

11. spacer 2.7|2652085|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to GQ452243 (Enterococcus phage phiEf11, complete genome) position: , mismatch: 1, identity: 0.967

gaaagcgttgtgtaatgtgtccatttcttt	CRISPR spacer
gaaagtgttgtgtaatgtgtccatttcttt	Protospacer
*****.************************

12. spacer 2.7|2652085|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to NC_028671 (Enterococcus phage vB_EfaS_IME197, complete genome) position: , mismatch: 1, identity: 0.967

gaaagcgttgtgtaatgtgtccatttcttt	CRISPR spacer
gaaagtgttgtgtaatgtgtccatttcttt	Protospacer
*****.************************

13. spacer 1.2|1338753|26|NZ_CP041012|PILER-CR matches to LC547238 (Entercoccus phage phiM1EF2 DNA, nearly complete genome) position: , mismatch: 2, identity: 0.923

acattaagagaaaagattattatgca	CRISPR spacer
acattaagagaaaagattattacaca	Protospacer
**********************..**

14. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to LC547238 (Entercoccus phage phiM1EF2 DNA, nearly complete genome) position: , mismatch: 2, identity: 0.933

aaaaacattaagagaaaagattattatgca	CRISPR spacer
aaaaacattaagagaaaagattattacaca	Protospacer
**************************..**

15. spacer 1.6|1338881|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NC_028671 (Enterococcus phage vB_EfaS_IME197, complete genome) position: , mismatch: 2, identity: 0.933

tggtgaagatgttgattctggattatcaaa	CRISPR spacer
tggcgaagatgttgattctgggttatcaaa	Protospacer
***.*****************.********

16. spacer 2.3|2651821|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to MT119359 (Enterococcus phage heks, complete genome) position: , mismatch: 2, identity: 0.933

gaaacttgatgtgctacacctttagcccca	CRISPR spacer
gaaatttgatatgctacacctttagcccca	Protospacer
****.*****.*******************

17. spacer 2.3|2651821|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to MK125140 (Enterococcus phage Nonaheksakonda, complete genome) position: , mismatch: 2, identity: 0.933

gaaacttgatgtgctacacctttagcccca	CRISPR spacer
gaaatttgatatgctacacctttagcccca	Protospacer
****.*****.*******************

18. spacer 2.3|2651821|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to NC_042023 (Enterococcus phage phiSHEF5, complete genome) position: , mismatch: 2, identity: 0.933

gaaacttgatgtgctacacctttagcccca	CRISPR spacer
gaaatttgatgtgctacacctttaacccca	Protospacer
****.*******************.*****

19. spacer 2.7|2652085|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to GQ478082 (Enterococcus phage phiFL1B, complete genome) position: , mismatch: 2, identity: 0.933

gaaagcgttgtgtaatgtgtccatttcttt	CRISPR spacer
gaaagtgttgtgtaatgtgtctatttcttt	Protospacer
*****.***************.********

20. spacer 2.7|2652085|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to GQ478083 (Enterococcus phage phiFL1C, complete genome) position: , mismatch: 2, identity: 0.933

gaaagcgttgtgtaatgtgtccatttcttt	CRISPR spacer
gaaagtgttgtgtaatgtgtctatttcttt	Protospacer
*****.***************.********

21. spacer 2.7|2652085|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to NC_013646 (Enterococcus phage phiFL1A, complete genome) position: , mismatch: 2, identity: 0.933

gaaagcgttgtgtaatgtgtccatttcttt	CRISPR spacer
gaaagtgttgtgtaatgtgtctatttcttt	Protospacer
*****.***************.********

22. spacer 1.2|1338753|26|NZ_CP041012|PILER-CR matches to NC_010180 (Bacillus mycoides KBAB4 plasmid pBWB401, complete sequence) position: , mismatch: 3, identity: 0.885

acattaagagaaaagattatt-atgca	CRISPR spacer
acattaagagaaaagcttattaatgt-	Protospacer
*************** ***** ***.

23. spacer 1.2|1338753|26|NZ_CP041012|PILER-CR matches to NZ_CP020744 (Bacillus mycoides strain Gnyt1 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.885

acattaagagaaaagattatt-atgca	CRISPR spacer
acattaagagaaaagcttattaatgt-	Protospacer
*************** ***** ***.

24. spacer 1.2|1338753|26|NZ_CP041012|PILER-CR matches to CP037991 (Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.885

acattaagagaaaagattatt-atgca	CRISPR spacer
acattaagagaaaagcttattaatgt-	Protospacer
*************** ***** ***.

25. spacer 1.2|1338753|26|NZ_CP041012|PILER-CR matches to MN693229 (Marine virus AFVG_25M533, complete genome) position: , mismatch: 4, identity: 0.846

acattaagagaaaagattattatgca	CRISPR spacer
aaattaagagaaaagataattatgat	Protospacer
* *************** ******

26. spacer 1.2|1338753|26|NZ_CP041012|PILER-CR matches to NZ_CP018939 (Bacteroides fragilis strain Q1F2 plasmid Q1F2-p2, complete sequence) position: , mismatch: 5, identity: 0.808

acattaagagaaaagattattatgca	CRISPR spacer
acattaagggaaaagattataattgc	Protospacer
********.*********** **

27. spacer 1.2|1338753|26|NZ_CP041012|PILER-CR matches to NZ_CP018939 (Bacteroides fragilis strain Q1F2 plasmid Q1F2-p2, complete sequence) position: , mismatch: 5, identity: 0.808

acattaagagaaaagattattatgca	CRISPR spacer
acattaagggaaaagattataattgc	Protospacer
********.*********** **

28. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_KT186230 (Bacillus anthracis strain P.NO2 plasmid pXO1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

29. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP036355 (Bacillus sp. SYJ plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

30. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NC_014331 (Bacillus cereus biovar anthracis str. CI plasmid pCI-XO1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

31. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP022045 (Bacillus anthracis strain FDAARGOS_341 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

32. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NC_007322 (Bacillus anthracis str. 'Ames Ancestor' plasmid pXO1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

33. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NC_012579 (Bacillus anthracis str. CDC 684 plasmid pX01, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

34. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP015777 (Bacillus anthracis strain Tangail-1 plasmid pXO1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

35. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP018904 (Bacillus anthracis strain Tyrol 4675 plasmid pXO1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

36. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP023002 (Bacillus anthracis strain 14RA5914 plasmid pX01, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

37. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_AP019732 (Bacillus anthracis strain PCr plasmid PCr-pXO1) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

38. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_AP018444 (Bacillus anthracis strain CZC5 plasmid pXO1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

39. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP029324 (Bacillus anthracis strain 17OD930 plasmid pXO1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

40. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NC_012656 (Bacillus anthracis str. A0248 plasmid pXO1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

41. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NC_010934 (Bacillus cereus strain G9241 plasmid pBCXO1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

42. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP019589 (Bacillus anthracis strain SPV842_15 plasmid pX01, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

43. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP010853 (Bacillus anthracis strain A1144 plasmid pXO1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

44. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP007665 (Bacillus anthracis str. Vollum plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

45. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP008847 (Bacillus anthracis strain HYU01 plasmid pX01, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

46. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP006743 (Bacillus anthracis str. SVA11 plasmid pXO1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

47. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_AP014834 (Bacillus anthracis strain Shikan-NIID plasmid pXO1) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

48. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP029806 (Bacillus anthracis strain London_499 plasmid pX01, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

49. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NC_001496 (Bacillus anthracis virulence plasmid PX01, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

50. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NC_017726 (Bacillus anthracis str. H9401 plasmid BAP1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

51. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP014177 (Bacillus anthracis strain Stendal plasmid pXO1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

52. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP009597 (Bacillus anthracis str. V770-NP-1R plasmid pXO1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

53. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP009901 (Bacillus anthracis strain 2002013094 plasmid pXO1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

54. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP009340 (Bacillus anthracis strain Ohio ACB plasmid 1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

55. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP009696 (Bacillus anthracis strain RA3 plasmid pXO1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

56. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP009463 (Bacillus anthracis strain SK-102 plasmid pXO1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

57. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP009699 (Bacillus anthracis strain BA1035 plasmid pXO1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

58. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP009592 (Bacillus cereus G9241 plasmid pBCX01, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

59. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP009543 (Bacillus anthracis strain BA1015 plasmid pXO1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

60. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP010321 (Bacillus anthracis strain Canadian Bison isolate A0369 plasmid 1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

61. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP009540 (Bacillus anthracis str. Sterne plasmid pXO1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

62. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP009330 (Bacillus anthracis strain K3 plasmid 1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

63. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP009324 (Bacillus anthracis strain PAK-1 plasmid 1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

64. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP009327 (Bacillus anthracis strain Vollum 1B plasmid 1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

65. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP001975 (Bacillus anthracis str. A16R plasmid pXO1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

66. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP009317 (Bacillus cereus 03BB102 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

67. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP009980 (Bacillus anthracis strain Ames isolate BACI008 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

68. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP001971 (Bacillus anthracis str. A16 plasmid pXO1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

69. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NC_012473 (Bacillus cereus 03BB102 plasmid p03BB102_179, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

70. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP047132 (Bacillus anthracis str. BF1 plasmid pXO1, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaacattaagagaaaagattattatgca-	CRISPR spacer
aaaaacattacgggaaaagattatt-tatat	Protospacer
********** *.************ *..*

71. spacer 1.7|1338947|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 5, identity: 0.833

tcaagaaattgcattaagttcaaaaaattt	CRISPR spacer
taatgtaattgcattaagagcaaaaaattt	Protospacer
* * * ************  **********

72. spacer 2.3|2651821|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to MH375074 (Enterococcus phage LY0323, complete genome) position: , mismatch: 5, identity: 0.833

gaaacttgatgtgctacacctttagcccca	CRISPR spacer
tccattttatgtgctacacctttagcccca	Protospacer
   *.** **********************

73. spacer 2.3|2651821|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to MK982307 (Enterococcus phage MSF2, complete genome) position: , mismatch: 5, identity: 0.833

gaaacttgatgtgctacacctttagcccca	CRISPR spacer
tccattttatgtgctacacctttagcccca	Protospacer
   *.** **********************

74. spacer 2.3|2651821|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to KX284704 (Enterococcus phage SANTOR1, complete genome) position: , mismatch: 5, identity: 0.833

gaaacttgatgtgctacacctttagcccca	CRISPR spacer
tccattttatgtgctacacctttagcccca	Protospacer
   *.** **********************

75. spacer 1.2|1338753|26|NZ_CP041012|PILER-CR matches to NZ_CP045609 (Bacillus cereus strain SB1 plasmid p3, complete sequence) position: , mismatch: 6, identity: 0.769

acattaagagaaaagattattatgca	CRISPR spacer
acattaagagaaaaaattatttattt	Protospacer
**************.******   .

76. spacer 1.2|1338753|26|NZ_CP041012|PILER-CR matches to KT187252 (Bacillus phage PBC6, complete genome) position: , mismatch: 6, identity: 0.769

acattaagagaaaagattattatgca	CRISPR spacer
acattaagagaaaagattacgggaga	Protospacer
*******************. . . *

77. spacer 1.2|1338753|26|NZ_CP041012|PILER-CR matches to MH487649 (Bacillus phage BC01, complete genome) position: , mismatch: 6, identity: 0.769

acattaagagaaaagattattatgca	CRISPR spacer
acattaagagaaaagattacgggaga	Protospacer
*******************. . . *

78. spacer 1.7|1338947|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NC_019526 (Enterobacteria phage vB_KleM-RaK2, complete genome) position: , mismatch: 6, identity: 0.8

tcaagaa--attgcattaagttcaaaaaattt	CRISPR spacer
--aacgattatggcattacgttcaaaaaattt	Protospacer
  ** .*  ** ****** *************

79. spacer 1.7|1338947|30|NZ_CP041012|CRISPRCasFinder,CRT matches to MT708547 (Klebsiella phage Muenster, complete genome) position: , mismatch: 6, identity: 0.8

tcaagaa--attgcattaagttcaaaaaattt	CRISPR spacer
--aacgattatggcattacgttcaaaaaattt	Protospacer
  ** .*  ** ****** *************

80. spacer 1.7|1338947|30|NZ_CP041012|CRISPRCasFinder,CRT matches to AB897757 (Klebsiella phage K64-1 DNA, complete genome) position: , mismatch: 6, identity: 0.8

tcaagaa--attgcattaagttcaaaaaattt	CRISPR spacer
--aacgattatggcattacgttcaaaaaattt	Protospacer
  ** .*  ** ****** *************

81. spacer 2.1|2651689|30|NZ_CP041012|CRISPRCasFinder,CRT matches to MK867354 (Synechococcus phage S-SCSM1, complete genome) position: , mismatch: 6, identity: 0.8

atatgtaaatcataatgagcatttacattg	CRISPR spacer
atatggaaatcataatgaggattttccatc	Protospacer
***** ************* **** *  *

82. spacer 2.2|2651755|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015884 (Enterococcus faecalis strain sorialis plasmid Efsorialis-p1, complete sequence) position: , mismatch: 6, identity: 0.8

-tgttaatttcctcatttcgtcttgttttta	CRISPR spacer
gtatt-ttttccgcatgtcgtcttgtttttt	Protospacer
 *.**  ***** *** *************

83. spacer 2.4|2651887|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to KY290955 (Aeromonas phage 65.2, complete genome) position: , mismatch: 6, identity: 0.8

ttgcttcagaacttccatagctttcttgaa	CRISPR spacer
ttgcttcagaacttcaatagcttctacaaa	Protospacer
*************** *******.. ..**

84. spacer 2.4|2651887|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to NC_015251 (Aeromonas phage 65, complete genome) position: , mismatch: 6, identity: 0.8

ttgcttcagaacttccatagctttcttgaa	CRISPR spacer
ttgcttcagaacttcaatagcttctacaaa	Protospacer
*************** *******.. ..**

85. spacer 2.9|2652217|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KJ776578 (Clostridium botulinum strain CDC3875 plasmid pCDC3875, complete sequence) position: , mismatch: 6, identity: 0.8

atttcaccttctgttttagaagctgcttta--	CRISPR spacer
atttcaccttgtgttttagaaa--acttcatt	Protospacer
********** **********.  .***.*

86. spacer 2.9|2652217|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KJ776580 (Clostridium botulinum strain CDC5900 plasmid pCDC5900, complete sequence) position: , mismatch: 6, identity: 0.8

atttcaccttctgttttagaagctgcttta--	CRISPR spacer
atttcaccttgtgttttagaaa--acttcatt	Protospacer
********** **********.  .***.*

87. spacer 1.3|1338683|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP046008 (Escherichia coli strain 1919D62 plasmid p1919D62-2, complete sequence) position: , mismatch: 7, identity: 0.767

aaaataaatggaactcatagtaagagggtt	CRISPR spacer
gtaataaatggaactaatagcaagatgact	Protospacer
. ************* ****.**** *..*

88. spacer 1.3|1338683|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP046005 (Escherichia coli strain 1919D3 plasmid p1919D3-2, complete sequence) position: , mismatch: 7, identity: 0.767

aaaataaatggaactcatagtaagagggtt	CRISPR spacer
gtaataaatggaactaatagcaagatgact	Protospacer
. ************* ****.**** *..*

89. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NC_010180 (Bacillus mycoides KBAB4 plasmid pBWB401, complete sequence) position: , mismatch: 7, identity: 0.767

aaaaacattaagagaaaagattatt-atgca	CRISPR spacer
tgcgacattaagagaaaagcttattaatgt-	Protospacer
 . .*************** ***** ***.

90. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP020744 (Bacillus mycoides strain Gnyt1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

aaaaacattaagagaaaagattatt-atgca	CRISPR spacer
tgcgacattaagagaaaagcttattaatgt-	Protospacer
 . .*************** ***** ***.

91. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to CP037991 (Bacillus mycoides strain TH26 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

aaaaacattaagagaaaagattatt-atgca	CRISPR spacer
tgcgacattaagagaaaagcttattaatgt-	Protospacer
 . .*************** ***** ***.

92. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP049914 (Vibrio sp. HDW18 plasmid p_unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

aaaaacattaagagaaaagattattatgca	CRISPR spacer
taaaattttaagagaaaagattatgttaga	Protospacer
 ****. *****************  *. *

93. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP012100 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-1, complete sequence) position: , mismatch: 7, identity: 0.767

aaaaacattaagagaaaagattatt-atgca	CRISPR spacer
tgcaacattaagagaaaatcttattaatgt-	Protospacer
 . ***************  ***** ***.

94. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to DQ003638 (Listeria phage A511, complete genome) position: , mismatch: 7, identity: 0.767

aaaaacattaagagaaaagattattatgca	CRISPR spacer
tgaaacattaacagaaaagactattctaga	Protospacer
 .********* ********.**** *. *

95. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to KJ668717 (Listeria phage LMTA-34 hypothetical proteins, transposase domain-containing protein, and hypothetical proteins genes, complete cds) position: , mismatch: 7, identity: 0.767

aaaaacattaagagaaaagattattatgca	CRISPR spacer
tgaaacattaacagaaaagactattctaga	Protospacer
 .********* ********.**** *. *

96. spacer 2.4|2651887|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to MT490303 (Prochlorococcus phage P-HS2, complete genome) position: , mismatch: 7, identity: 0.767

ttgcttcagaacttccatagctttcttgaa	CRISPR spacer
attgttaagaacttccatacctttctttag	Protospacer
 *  ** ************ ******* *.

97. spacer 2.4|2651887|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to MN694626 (Marine virus AFVG_250M967, complete genome) position: , mismatch: 7, identity: 0.767

ttgcttcagaacttccatagctttcttgaa	CRISPR spacer
atgaggcataccttccatagctttcttgag	Protospacer
 **   ** * ******************.

98. spacer 2.4|2651887|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to NC_020847 (Cyanophage MED4-184 genomic sequence) position: , mismatch: 7, identity: 0.767

ttgcttcagaacttccatagctttcttgaa	CRISPR spacer
attgttaagaacttccatacctttctttag	Protospacer
 *  ** ************ ******* *.

99. spacer 2.4|2651887|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to JF974321 (Cyanophage MED4-117 genomic sequence) position: , mismatch: 7, identity: 0.767

ttgcttcagaacttccatagctttcttgaa	CRISPR spacer
attattaagaacttccatacctttctttag	Protospacer
 *  ** ************ ******* *.

100. spacer 2.6|2652019|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016597 (Bacillus cereus strain K8 plasmid pBCK802, complete sequence) position: , mismatch: 7, identity: 0.767

accattgacaacaatattcttttgttgcac	CRISPR spacer
acaattgacaacaatatccttttataaaaa	Protospacer
** **************.*****.* . *

101. spacer 2.7|2652085|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to MH179477 (Aeromonas phage 60AhydR15PP, complete genome) position: , mismatch: 7, identity: 0.767

gaaagcgttgtgtaatgtgtccatttcttt	CRISPR spacer
tggagcgttgtgaaatttgtccatttcata	Protospacer
 ..********* *** ********** *

102. spacer 2.7|2652085|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to NC_014635 (Aeromonas phage phiAS4, complete genome) position: , mismatch: 7, identity: 0.767

gaaagcgttgtgtaatgtgtccatttcttt	CRISPR spacer
tggagcgttgtgaaatttgtccatttcata	Protospacer
 ..********* *** ********** *

103. spacer 2.7|2652085|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to NC_020879 (Aeromonas phage Aes012, complete genome) position: , mismatch: 7, identity: 0.767

gaaagcgttgtgtaatgtgtccatttcttt	CRISPR spacer
tggagcgttgtgaaatttgtccatttcata	Protospacer
 ..********* *** ********** *

104. spacer 2.7|2652085|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025802 (Yersinia ruckeri strain SC09 plasmid pLT, complete sequence) position: , mismatch: 7, identity: 0.767

gaaagcgttgtgtaatgtgtccatttcttt	CRISPR spacer
tagctctttgcgtaacgtgtccatttcttt	Protospacer
 *.  * ***.****.**************

105. spacer 2.9|2652217|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014218 (Clostridium botulinum strain B515 plasmid pRSJ21_3, complete sequence) position: , mismatch: 7, identity: 0.767

atttcaccttctgttttagaagctgcttta	CRISPR spacer
cttgatacttctcttttataagctgcttta	Protospacer
 **    ***** ***** ***********

106. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP045609 (Bacillus cereus strain SB1 plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.733

aaaaacattaagagaaaagattattatgca	CRISPR spacer
aagtacattaagagaaaaaattatttattt	Protospacer
**. **************.******   .

107. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NC_015417 (Clostridium botulinum BKT015925 plasmid p1BKT015925, complete sequence) position: , mismatch: 8, identity: 0.733

aaaaacattaagagaaaagattattatgca	CRISPR spacer
attaaaattaagagaaaagattatgccacc	Protospacer
*  ** ******************  ..*

108. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP018939 (Bacteroides fragilis strain Q1F2 plasmid Q1F2-p2, complete sequence) position: , mismatch: 8, identity: 0.733

aaaaacattaagagaaaagattattatgca	CRISPR spacer
gagtacattaagggaaaagattataattgc	Protospacer
.*. ********.*********** **

109. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP018939 (Bacteroides fragilis strain Q1F2 plasmid Q1F2-p2, complete sequence) position: , mismatch: 8, identity: 0.733

aaaaacattaagagaaaagattattatgca	CRISPR spacer
gagtacattaagggaaaagattataattgc	Protospacer
.*. ********.*********** **

110. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NC_007581 (Clostridium phage c-st, complete genome) position: , mismatch: 8, identity: 0.733

aaaaacattaagagaaaagattattatgca	CRISPR spacer
attaaaattaagagaaaagattatgccacc	Protospacer
*  ** ******************  ..*

111. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to ACSJ01000017 (Clostridium phage D-1873 CLG.Contig173, whole genome shotgun sequence) position: , mismatch: 8, identity: 0.733

aaaaacattaagagaaaagattattatgca	CRISPR spacer
attaaaattaagagaaaagattataccacc	Protospacer
*  ** ******************  ..*

112. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to AP008983 (Clostridium phage c-st genomic DNA, complete genome) position: , mismatch: 8, identity: 0.733

aaaaacattaagagaaaagattattatgca	CRISPR spacer
attaaaattaagagaaaagattatgccacc	Protospacer
*  ** ******************  ..*

113. spacer 1.6|1338881|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NC_019909 (Yersinia phage phiR1-RT complete genome) position: , mismatch: 8, identity: 0.733

tggtgaagatgttgattctgg----attatcaaa	CRISPR spacer
tggtgaagattttgattctggtagtggtac----	Protospacer
********** **********    . **.

114. spacer 1.6|1338881|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NC_028820 (Yersinia phage vB_YenM_TG1, complete genome) position: , mismatch: 8, identity: 0.733

tggtgaagatgttgattctgg----attatcaaa	CRISPR spacer
tggtgaagattttgattctggtagtggtac----	Protospacer
********** **********    . **.

115. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 9, identity: 0.7

aaaaacattaagagaaaagattattatgca	CRISPR spacer
taaaacattaagagaaaataatatagaagt	Protospacer
 ***************** * *** . .

116. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 9, identity: 0.7

aaaaacattaagagaaaagattattatgca	CRISPR spacer
taaaacattaagagaaaataatatagaagt	Protospacer
 ***************** * *** . .

117. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 9, identity: 0.7

aaaaacattaagagaaaagattattatgca	CRISPR spacer
taaaacattaagagaaaataatatagaagt	Protospacer
 ***************** * *** . .

118. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP029455 (Bacillus cereus strain FORC087 plasmid pFORC087.1, complete sequence) position: , mismatch: 9, identity: 0.7

aaaaacattaagagaaaagattattatgca	CRISPR spacer
tgcaacattaagagaaaatcttattaatat	Protospacer
 . ***************  ******

119. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 9, identity: 0.7

aaaaacattaagagaaaagattattatgca	CRISPR spacer
taaaacattaagagaaaataatatagaagt	Protospacer
 ***************** * *** . .

120. spacer 1.4|1338749|30|NZ_CP041012|CRISPRCasFinder,CRT matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 9, identity: 0.7

aaaaacattaagagaaaagattattatgca	CRISPR spacer
taaaacattaagagaaaataatatagaagt	Protospacer
 ***************** * *** . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

794401 : 804141

Streptococcus_phage(57.14%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002356366.1\|794401_795040_+	dTMP kinase	M1PSC7	Streptococcus_phage	2.1e-54	53.8
WP_002356367.1\|795059_795389_+	cyclic-di-AMP receptor	NA	NA	NA	NA
WP_002384059.1\|795390_796341_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	6.2e-34	33.0
WP_002356371.1\|796457_797297_+	stage 0 sporulation family protein	NA	NA	NA	NA
WP_002356372.1\|797289_797637_+	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	8.1e-16	36.7
WP_002356373.1\|797748_798621_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	6.2e-81	57.6
WP_002356375.1\|798635_799298_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	6.7e-19	31.1
WP_002365066.1\|799281_800040_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_002362328.1\|800165_801284_+	DNA polymerase IV	NA	NA	NA	NA
WP_002365065.1\|801328_801925_-	anaerobic ribonucleoside-triphosphate reductase activating protein	A0A0C5K925	Enterococcus_phage	2.3e-50	56.1
WP_002385686.1\|801957_804141_-	anaerobic ribonucleoside-triphosphate reductase	A0A0C5KKX3	Enterococcus_phage	3.1e-286	66.8

DBSCAN-SWA_2

1331089 : 1394444

Enterococcus_phage(36.36%)

capsid,integrase,head,tRNA,holin,tail,portal,terminase

attL 1322539:1322555|attR 1393078:1393094

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1322539:1322555	attL	NA	NA	NA	NA
WP_002356960.1\|1331089_1332214_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_002356962.1\|1332393_1333632_-	multidrug efflux MFS transporter	NA	NA	NA	NA
WP_002356963.1\|1333648_1334164_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_002356965.1\|1334296_1334866_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_002356966.1\|1334963_1335329_+	DUF1033 family protein	NA	NA	NA	NA
WP_002385814.1\|1335291_1337541_+	DNA topoisomerase III	NA	NA	NA	NA
WP_002364371.1\|1337625_1338489_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_002356974.1\|1339418_1340837_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_002356976.1\|1340833_1341847_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_002364369.1\|1341851_1343585_+	thiol reductant ABC exporter subunit CydD	A0A2H4UU96	Bodo_saltans_virus	6.5e-13	24.3
WP_002364368.1\|1343581_1345348_+	thiol reductant ABC exporter subunit CydC	W8CYL7	Bacillus_phage	4.6e-22	25.6
WP_002356979.1\|1345427_1346408_-	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_002360016.1\|1346529_1347435_+	prenyltransferase	NA	NA	NA	NA
WP_002360017.1\|1347463_1348675_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_002364367.1\|1348988_1351412_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	2.2e-83	48.0
WP_002356983.1\|1351541_1352243_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_002381711.1\|1352360_1353110_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.9e-33	36.5
WP_002389252.1\|1353099_1354929_+	ABC transporter permease	NA	NA	NA	NA
WP_002356987.1\|1355053_1356127_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA
WP_002360022.1\|1356416_1357745_+	amino acid permease	NA	NA	NA	NA
WP_002364362.1\|1357985_1358954_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_002356990.1\|1358910_1359957_+	type II secretion system F family protein	NA	NA	NA	NA
WP_002356991.1\|1359956_1360232_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_137007137.1\|1360228_1360672_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_002364359.1\|1360699_1361848_-\|integrase	site-specific integrase	A0A0M5M609	Bacillus_phage	4.5e-39	29.6
WP_002364358.1\|1361944_1362673_-	ion transporter	A0A1B0Y2S3	Lactobacillus_phage	2.4e-22	48.4
WP_016630909.1\|1362840_1363746_-	DUF4352 domain-containing protein	NA	NA	NA	NA
WP_002364356.1\|1363839_1364184_-	ImmA/IrrE family metallo-endopeptidase	A0A097QQ08	Enterococcus_phage	2.9e-42	73.5
WP_002364355.1\|1364200_1364533_-	helix-turn-helix transcriptional regulator	A0A097QQ00	Enterococcus_phage	2.6e-35	69.1
WP_002364354.1\|1364844_1365021_+	helix-turn-helix transcriptional regulator	D2IZW2	Enterococcus_phage	1.7e-14	65.5
WP_002364352.1\|1365368_1366094_+	phage regulatory protein	A0A0P0IDD0	Lactobacillus_phage	6.4e-31	54.0
WP_002364350.1\|1366119_1366308_-	YegP family protein	NA	NA	NA	NA
WP_002399426.1\|1366362_1366572_+	hypothetical protein	D2IZ57	Enterococcus_phage	1.4e-18	74.2
WP_002364347.1\|1366608_1366947_+	hypothetical protein	NA	NA	NA	NA
WP_002357006.1\|1367231_1367786_-	hypothetical protein	NA	NA	NA	NA
WP_002357007.1\|1368005_1368323_+	hypothetical protein	NA	NA	NA	NA
WP_002364345.1\|1368315_1369050_+	ERF family protein	A0A1W6JNQ5	Staphylococcus_phage	2.3e-20	29.9
WP_002364344.1\|1369054_1369696_+	hypothetical protein	U5U4M2	Lactobacillus_phage	4.8e-30	36.0
WP_002357010.1\|1369700_1369901_+	hypothetical protein	NA	NA	NA	NA
WP_002364343.1\|1369900_1370758_+	helix-turn-helix domain-containing protein	A0A0P0ICZ8	Lactobacillus_phage	1.1e-24	36.1
WP_002364342.1\|1370754_1371183_+	RusA family crossover junction endodeoxyribonuclease	D2IYU2	Enterococcus_phage	4.3e-67	91.4
WP_002389926.1\|1371462_1371723_+	hypothetical protein	NA	NA	NA	NA
WP_002364339.1\|1372090_1372507_+	autolysin	D2IZ17	Enterococcus_phage	4.1e-67	99.3
WP_002384355.1\|1373037_1373652_+	hypothetical protein	D2IYV7	Enterococcus_phage	7.2e-108	100.0
WP_002364294.1\|1374187_1374418_+	hypothetical protein	NA	NA	NA	NA
WP_002364295.1\|1374449_1374884_+\|terminase	terminase small subunit	A7J290	Streptococcus_phage	1.8e-44	64.5
WP_002364296.1\|1374864_1376148_+\|terminase	PBSX family phage terminase large subunit	Q9AZ91	Lactobacillus_prophage	1.7e-156	66.0
WP_002364297.1\|1376147_1377632_+\|portal	phage portal protein	A0A097QPZ5	Enterococcus_phage	3.8e-139	99.6
WP_002364298.1\|1377624_1378551_+\|capsid	minor capsid protein	A0A097QPZ9	Enterococcus_phage	3.5e-130	97.1
WP_002364300.1\|1378655_1379309_+	DUF4355 domain-containing protein	NA	NA	NA	NA
WP_002363368.1\|1379321_1380218_+	hypothetical protein	U3PDP8	Lactobacillus_phage	3.3e-69	49.8
WP_002363369.1\|1380288_1380621_+\|head,tail	phage head-tail connector protein	A0A1W6JNH7	Staphylococcus_phage	2.7e-08	38.5
WP_002364301.1\|1380617_1380893_+	hypothetical protein	NA	NA	NA	NA
WP_002363372.1\|1380889_1381228_+	HK97 gp10 family phage protein	A0A1L2K255	Streptococcus_phage	1.8e-12	38.7
WP_002363373.1\|1381224_1381617_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_002364302.1\|1381635_1382241_+\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_002364303.1\|1382243_1382552_+	hypothetical protein	L0P8M2	Lactobacillus_phage	2.7e-07	77.1
WP_002364304.1\|1382614_1383013_+	hypothetical protein	NA	NA	NA	NA
WP_002364305.1\|1383081_1383387_+	hypothetical protein	NA	NA	NA	NA
WP_002399422.1\|1383373_1387828_+\|tail	phage tail tape measure protein	M1PKM6	Streptococcus_phage	2.2e-89	49.0
WP_002399421.1\|1387824_1388547_+	hypothetical protein	C5IUK4	Streptococcus_phage	1.6e-42	39.2
WP_002399420.1\|1388546_1389992_+\|tail	phage tail protein	A0A1X9IGI5	Lactococcus_phage	1.5e-76	39.0
WP_002399419.1\|1389997_1390738_+	hypothetical protein	A0A1X9IGH6	Lactococcus_phage	2.0e-27	34.6
WP_002399418.1\|1390754_1391207_+	hypothetical protein	C0LZY6	Enterococcus_phage	1.6e-16	39.5
WP_002399417.1\|1391225_1391621_+	hypothetical protein	NA	NA	NA	NA
WP_002368228.1\|1391622_1391745_+	XkdX family protein	NA	NA	NA	NA
WP_002378446.1\|1391755_1392136_+\|holin	phage holin family protein	A0A097QQ04	Enterococcus_phage	1.1e-61	100.0
WP_002365833.1\|1392148_1393408_+	LysM peptidoglycan-binding domain-containing protein	A0A0S2MYF3	Enterococcus_phage	1.1e-219	90.4
1393078:1393094	attR	NA	NA	NA	NA
WP_002357053.1\|1394243_1394444_+	cold-shock protein	Q9AZD3	Lactococcus_phage	1.6e-24	80.3

DBSCAN-SWA_3

1507521 : 1516165

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002365766.1\|1507521_1508010_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.4e-19	42.0
WP_002399033.1\|1508002_1509127_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_002357270.1\|1509278_1509992_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3ELR0	Synechococcus_phage	4.3e-48	43.0
WP_002365764.1\|1510005_1510257_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_002357272.1\|1510257_1510932_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_002365762.1\|1510928_1513148_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	7.5e-147	39.9
WP_002389355.1\|1513123_1514563_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.6e-49	33.1
WP_002365760.1\|1514564_1515596_+	phosphoribosylformylglycinamidine cyclo-ligase	M4QRQ6	Synechococcus_phage	3.1e-55	44.4
WP_002389224.1\|1515592_1516165_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	5.4e-25	35.1

DBSCAN-SWA_4

1802302 : 1849518

Listeria_phage(51.11%)

plate,capsid,integrase,tail,terminase

attL 1799615:1799637|attR 1849543:1849565

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1799615:1799637	attL	NA	NA	NA	NA
WP_002392879.1\|1802302_1803409_-	SH3 domain-containing protein	V5URN7	Enterococcus_phage	5.3e-85	47.5
WP_002406383.1\|1803467_1803665_-	hypothetical protein	NA	NA	NA	NA
WP_002377506.1\|1803661_1804018_-	hypothetical protein	NA	NA	NA	NA
WP_002377507.1\|1804022_1804151_-	XkdX family protein	NA	NA	NA	NA
WP_002406382.1\|1804150_1804585_-	hypothetical protein	NA	NA	NA	NA
WP_172607934.1\|1804606_1806256_-\|tail	tail fiber protein	D2J018	Enterococcus_phage	1.2e-109	65.0
WP_002390597.1\|1806268_1806898_-	hypothetical protein	A8ATI3	Listeria_phage	3.1e-58	57.4
WP_002390596.1\|1806881_1808036_-\|plate	baseplate J/gp47 family protein	A8ATI2	Listeria_phage	1.3e-113	54.1
WP_002390594.1\|1808028_1808376_-	DUF2634 domain-containing protein	A0A2H4J4S8	uncultured_Caudovirales_phage	2.9e-13	49.4
WP_002377515.1\|1808375_1808708_-	hypothetical protein	A8ATI0	Listeria_phage	1.6e-21	50.0
WP_002390593.1\|1808707_1809538_-	hypothetical protein	A8ATH9	Listeria_phage	7.8e-65	45.8
WP_002377517.1\|1809538_1809901_-	hypothetical protein	A8ATH8	Listeria_phage	5.1e-29	46.6
WP_002386767.1\|1809910_1810468_-	LysM peptidoglycan-binding domain-containing protein	A8ATH7	Listeria_phage	2.8e-34	43.2
WP_002406378.1\|1810467_1815633_-	peptidoglycan endopeptidase EnpA	A8ATH6	Listeria_phage	3.6e-152	36.8
WP_002386764.1\|1815635_1815776_-	hypothetical protein	A8ATH5	Listeria_phage	3.0e-06	70.3
WP_002406377.1\|1815816_1816149_-	hypothetical protein	A8ATH4	Listeria_phage	1.7e-26	58.7
WP_002377526.1\|1816201_1816600_-	hypothetical protein	A8ATH3	Listeria_phage	6.6e-30	54.0
WP_002406376.1\|1816615_1817653_-	DUF3383 family protein	A8ATH2	Listeria_phage	2.9e-101	56.1
WP_002406375.1\|1817649_1818126_-	hypothetical protein	A8ATH1	Listeria_phage	1.9e-23	43.4
WP_002400009.1\|1818112_1818472_-	hypothetical protein	A0A2H4JDP3	uncultured_Caudovirales_phage	2.3e-13	43.7
WP_002406374.1\|1818471_1819074_-	hypothetical protein	A8ATG9	Listeria_phage	1.4e-34	43.1
WP_002400006.1\|1819073_1819415_-	DUF4054 domain-containing protein	NA	NA	NA	NA
WP_002377541.1\|1819426_1819813_-	hypothetical protein	NA	NA	NA	NA
WP_002377543.1\|1819832_1820714_-	DUF2184 domain-containing protein	A8ATG6	Listeria_phage	1.8e-83	52.5
WP_002392025.1\|1820734_1821205_-	hypothetical protein	NA	NA	NA	NA
WP_002406372.1\|1821207_1822308_-	DUF2213 domain-containing protein	A8ATG4	Listeria_phage	8.4e-91	50.7
WP_002400413.1\|1822320_1822530_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_002406371.1\|1822522_1822810_-	hypothetical protein	A0A0S2MYE7	Enterococcus_phage	6.4e-27	67.1
WP_002377551.1\|1822866_1823031_-	hypothetical protein	NA	NA	NA	NA
WP_010822333.1\|1823023_1824268_-\|capsid	minor capsid protein	A8ATG2	Listeria_phage	1.3e-52	41.6
WP_002406369.1\|1824257_1825652_-	DUF1073 domain-containing protein	A8ATG1	Listeria_phage	4.7e-147	56.8
WP_002377555.1\|1825674_1827111_-\|terminase	phage terminase large subunit	A5GYP8	Lactococcus_phage	2.2e-200	72.6
WP_002406367.1\|1827091_1827817_-\|terminase	terminase small subunit	A0A1W6JNJ8	Staphylococcus_phage	4.6e-05	31.7
WP_002386742.1\|1827831_1828062_-	hypothetical protein	A8ATN7	Listeria_phage	8.0e-12	53.8
WP_002400405.1\|1828187_1829456_-	DNA modification methylase	A0A2I4R670	Erysipelothrix_phage	7.6e-96	46.4
WP_002400404.1\|1829500_1829803_-	hypothetical protein	NA	NA	NA	NA
WP_002386739.1\|1830509_1831094_-	positive control factor	NA	NA	NA	NA
WP_002377564.1\|1831194_1831383_-	hypothetical protein	NA	NA	NA	NA
WP_002377565.1\|1831514_1831694_-	hypothetical protein	NA	NA	NA	NA
WP_002406366.1\|1831694_1831901_-	hypothetical protein	D2IZL5	Enterococcus_phage	4.6e-27	84.8
WP_002406365.1\|1831894_1832212_-	hypothetical protein	NA	NA	NA	NA
WP_002406364.1\|1832212_1832698_-	hypothetical protein	C9E2P0	Enterococcus_phage	9.1e-90	98.8
WP_128713041.1\|1832710_1833325_-	DUF3850 domain-containing protein	C9E2N9	Enterococcus_phage	1.9e-44	50.9
WP_010822330.1\|1833317_1833485_-	hypothetical protein	A0A097BY78	Enterococcus_phage	8.9e-21	94.5
WP_002406361.1\|1833481_1833805_-	hypothetical protein	NA	NA	NA	NA
WP_002406360.1\|1833801_1834137_-	hypothetical protein	D2IYU9	Enterococcus_phage	5.1e-07	41.0
WP_010822329.1\|1834137_1834536_-	hypothetical protein	A0A097BY34	Enterococcus_phage	6.0e-31	51.8
WP_002406358.1\|1834541_1834769_-	hypothetical protein	NA	NA	NA	NA
WP_002386723.1\|1834790_1835588_-	DNA adenine methylase	R4IBV6	Listeria_phage	6.4e-109	69.4
WP_002386722.1\|1835645_1835873_-	hypothetical protein	C9E2N4	Enterococcus_phage	1.0e-06	50.9
WP_002386721.1\|1835903_1836098_-	hypothetical protein	NA	NA	NA	NA
WP_002386720.1\|1836122_1836872_-	hypothetical protein	D2IZY3	Enterococcus_phage	6.7e-116	84.5
WP_002386719.1\|1836955_1837270_-	hypothetical protein	NA	NA	NA	NA
WP_002406357.1\|1837290_1837788_-	Holliday junction resolvase RecU	A0A1L2JY30	Aeribacillus_phage	6.4e-14	35.4
WP_002386717.1\|1837803_1838568_-	DnaD domain protein	A0A1B0Y2R2	Lactobacillus_phage	7.5e-14	61.4
WP_002406356.1\|1838579_1839281_-	MBL fold metallo-hydrolase	A0A1L2JY21	Aeribacillus_phage	6.6e-49	42.3
WP_002400378.1\|1839280_1840453_-	hypothetical protein	NA	NA	NA	NA
WP_137007122.1\|1840453_1842568_-	AAA family ATPase	A0A1L2K2K3	Aeribacillus_phage	2.3e-49	25.2
WP_002406354.1\|1842572_1842863_-	hypothetical protein	NA	NA	NA	NA
WP_002406353.1\|1842918_1843149_-	hypothetical protein	NA	NA	NA	NA
WP_002406352.1\|1843149_1843347_-	hypothetical protein	NA	NA	NA	NA
WP_002386711.1\|1843327_1843489_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_002386710.1\|1843538_1844093_-	hypothetical protein	NA	NA	NA	NA
WP_002386709.1\|1844161_1844341_-	hypothetical protein	NA	NA	NA	NA
WP_010822327.1\|1844353_1844539_-	helix-turn-helix transcriptional regulator	A8ATK0	Listeria_phage	9.2e-11	60.3
WP_002386707.1\|1844704_1845028_+	helix-turn-helix transcriptional regulator	A8ATJ9	Listeria_phage	2.3e-17	66.7
WP_002406350.1\|1845048_1845513_+	ImmA/IrrE family metallo-endopeptidase	R4IBK9	Listeria_phage	9.5e-20	35.8
WP_002406349.1\|1845540_1846137_+	hypothetical protein	A0A059T7Z1	Listeria_phage	2.6e-30	36.0
WP_002406348.1\|1846209_1847778_+	SIR2 family protein	Q38324	Lactococcus_phage	5.6e-24	24.9
WP_002406347.1\|1848291_1849518_+\|integrase	site-specific integrase	A0A0P0I3D2	Lactobacillus_phage	3.2e-75	41.5
1849543:1849565	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1997848 : 2015620

Enterococcus_phage(46.15%)

tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002398986.1\|1997848_1998973_-	SH3 domain-containing protein	A0A139ZVY1	Enterococcus_phage	6.6e-75	43.8
WP_002357842.1\|1999091_1999487_-\|holin	phage holin family protein	F0PIJ6	Enterococcus_phage	2.8e-33	48.9
WP_002365555.1\|1999510_2001280_-	hypothetical protein	A0A097BYA8	Enterococcus_phage	8.0e-144	64.3
WP_002365554.1\|2001312_2002770_-\|tail	phage tail protein	C9E2K6	Enterococcus_phage	6.6e-176	48.0
WP_002365553.1\|2002782_2003709_-\|tail	phage tail family protein	C9E2K5	Enterococcus_phage	9.0e-147	78.6
WP_002398985.1\|2003710_2006644_-	hypothetical protein	A0A1U9WR55	Streptococcus_virus	1.1e-09	25.0
WP_002382238.1\|2006633_2006927_-	hypothetical protein	NA	NA	NA	NA
WP_002357848.1\|2007019_2007379_-	hypothetical protein	A0A0F6N4J9	Staphylococcus_phage	7.6e-09	32.2
WP_002365550.1\|2007411_2007924_-\|tail	phage major tail protein, TP901-1 family	W6LP72	Streptococcus_phage	8.8e-35	49.4
WP_002398984.1\|2007936_2008353_-	hypothetical protein	NA	NA	NA	NA
WP_002360491.1\|2008573_2008981_-	RinA family phage transcriptional activator	NA	NA	NA	NA
WP_002363798.1\|2009000_2009393_-	hypothetical protein	NA	NA	NA	NA
WP_002365547.1\|2009459_2010302_-	ATP-binding protein	A0A0P0I3L9	Lactobacillus_phage	6.3e-30	30.7
WP_002393201.1\|2010320_2011076_-	DnaD domain protein	A0A0K0MX39	Streptococcus_phage	8.7e-31	56.0
WP_002360496.1\|2011473_2011956_+	helix-turn-helix domain-containing protein	R9QTP6	Staphylococcus_phage	2.6e-20	47.7
WP_002382232.1\|2011990_2012476_+	toxin	A0A097BY56	Enterococcus_phage	4.4e-60	70.5
WP_002360497.1\|2012848_2013199_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_002357859.1\|2013223_2015620_-	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	1.7e-19	24.1

DBSCAN-SWA_6

2389432 : 2397350

uncultured_Caudovirales_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002355804.1\|2389432_2390608_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	2.5e-85	47.7
WP_002355803.1\|2390623_2391139_-	GrpB family protein	A0A2K5B2B6	Erysipelothrix_phage	1.7e-38	48.8
WP_002364710.1\|2391156_2391651_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_002355801.1\|2391716_2392076_-	DUF1304 domain-containing protein	NA	NA	NA	NA
WP_002385048.1\|2392143_2392524_+	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
WP_002355799.1\|2392569_2392929_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_002355798.1\|2392989_2393190_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_002355797.1\|2393303_2393825_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	3.0e-14	33.3
WP_002355796.1\|2394224_2395295_-	helix-turn-helix domain-containing protein	A0A288TXV8	Enterococcus_phage	7.6e-89	49.0
WP_002361357.1\|2395335_2396292_-	ATP-binding cassette domain-containing protein	A0A1J0FA64	Only_Syngen_Nebraska_virus	4.2e-06	23.9
WP_002355794.1\|2396291_2397350_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.0e-17	30.1

Anti-CRISPR protein detection

Acr_ID: NZ_CP041012.1|WP_002364300.1|1378655_1379309_+|DUF4355-domain-containing-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP041012.1|WP_002364300.1|1378655_1379309_+|DUF4355-domain-containing-protein

1378655_1379309_+

217 aa aa

1331089-1394444

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP041012_2	TypeII-A	2.7\|2652085\|30\|NZ_CP041012\|CRISPRCasFinder,CRT,PILER-CR	2652085-2652114	30	1372612-1372583	2

1. spacer 2.7|2652085|30|NZ_CP041012|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041012 position: 1372612-1372583, mismatch: 2

gaaagcgttgtgtaatgtgtccatttcttt	CRISPR spacer
gaaagtgttgtgtaatgtgtctatttcttt	Protospacer
*****.***************.********

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041012

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information