CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041036	Shewanella polaris strain SM1901 chromosome, complete genome	2 crisprs	cas3,csa3,DinG,DEDDh	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041036_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041036_1

720326-720438

Orphan

Consensus_repeat	Method
TAAAAGCAGTGATGTTAATTGATCGTTAAAATGGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041036_1

>merge|NZ_CP041036|1|720326-720438|CRISPRCasFinder
TAAAAGCAGTGATGTTAATTGATCGTTAAAATGGGTGGCTGAATTTTATTAAAAATGGGTGGCTGAATTTTATTTATTAAAAGCAGTGATGTTAATTGATCATTAAAATGGGT

>NZ_CP041036|1|1|720326-720438|CRISPRCasFinder
TAAAAGCAGTGATGTTAATTGATCGTTAAAATGGGT	GGCTGAATTTTATTAAAAATGGGTGGCTGAATTTTATTTAT
TAAAAGCAGTGATGTTAATTGATCATTAAAATGGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041036.1\|WP_167495973.1\|715125_715686_+\|SMI1/KNR4-family-protein	unknown	unknown	gnl\|CDD\|378155
NZ_CP041036.1\|WP_140233308.1\|719157_720135_+\|transposase	unknown	unknown	unknown
NZ_CP041036.1\|WP_140233302.1\|710329_711166_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271193
NZ_CP041036.1\|WP_140233309.1\|720565_721600_-\|glycine-betaine/L-proline-ABC-transporter-substrate-binding-protein-ProX	unknown	unknown	gnl\|CDD\|236852
NZ_CP041036.1\|WP_137222989.1\|723857_725096_-\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein-ProV	unknown	unknown	gnl\|CDD\|226643
NZ_CP041036.1\|WP_167495974.1\|717474_718611_+\|DUF2971-domain-containing-protein	unknown	unknown	unknown
NZ_CP041036.1\|WP_140233310.1\|728870_729890_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP041036.1\|WP_140233311.1\|730427_731033_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041036.1\|WP_140233313.1\|731655_732096_+\|DUF2202-domain-containing-protein	unknown	unknown	gnl\|CDD\|153107
NZ_CP041036.1\|WP_137222993.1\|721948_722983_-\|glycine-betaine/L-proline-ABC-transporter-substrate-binding-protein-ProX	unknown	unknown	gnl\|CDD\|236852
NZ_CP041036.1\|WP_140233303.1\|711170_712280_+\|IS91-family-transposase	unknown	unknown	gnl\|CDD\|377437
NZ_CP041036.1\|WP_140233316.1\|732978_733470_-\|DUF1097-family-protein	unknown	unknown	gnl\|CDD\|368942
NZ_CP041036.1\|WP_119969152.1\|714811_714991_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041036.1\|WP_140235505.1\|708967_709927_-\|integron-integrase	unknown	unknown	gnl\|CDD\|131303
NZ_CP041036.1\|WP_140233304.1\|712623_713061_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041036.1\|WP_140233315.1\|732105_732840_+\|ZIP-family-metal-transporter	unknown	unknown	gnl\|CDD\|223505
NZ_CP041036.1\|WP_140233305.1\|713567_714611_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376773
NZ_CP041036.1\|WP_137222991.1\|722979_723831_-\|proline/glycine-betaine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226644
NZ_CP041036.1\|WP_137223017.1\|708082_708853_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|237896
NZ_CP041036.1\|WP_140235506.1\|726181_728215_-\|cytochrome-C	unknown	unknown	gnl\|CDD\|274617

Protein	Function_ID	Function_description	E-value
NZ_CP041036.1\|WP_167495973.1\|715125_715686_+\|SMI1/KNR4-family-protein	gnl\|CDD\|378155	pfam09346, SMI1_KNR4, SMI1 / KNR4 family (SUKH-1). Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation. Genome contextual information showed that SMI1 are primary immunity proteins in bacterial toxin systems.	3.98217e-10
NZ_CP041036.1\|WP_137222989.1\|723857_725096_-\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein-ProV	gnl\|CDD\|226643	COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism].	0
NZ_CP041036.1\|WP_140233302.1\|710329_711166_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271193	cd01193, INT_IntI_C, Integron integrase and similar protiens, C-terminal catalytic domain. Integron integrases mediate site-specific DNA recombination between a proximal primary site (attI) and a secondary target site (attC) found within mobile gene cassettes encoding resistance or virulence factors. Unlike other site specific recombinases, the attC sites lack sequence conservation. Integron integrase exhibits broader DNA specificity by recognizing the non-conserved attC sites. The structure shows that DNA target site recognition are not dependent on canonical DNA but on the position of two flipped-out bases that interact in cis and in trans with the integrase. Integron-integrases are present in many natural occurring mobile elements, including transposons and conjugative plasmids. Vibrio, Shewanella, Xanthomonas, and Pseudomonas species harbor chromosomal super-integrons. All integron-integrases carry large inserts unlike the TnpF ermF-like proteins also seen in this group.	4.68776e-57
NZ_CP041036.1\|WP_140233309.1\|720565_721600_-\|glycine-betaine/L-proline-ABC-transporter-substrate-binding-protein-ProX	gnl\|CDD\|236852	PRK11119, proX, proline/glycine betaine ABC transporter substrate-binding protein ProX.	0
NZ_CP041036.1\|WP_137222991.1\|722979_723831_-\|proline/glycine-betaine-ABC-transporter-permease	gnl\|CDD\|226644	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism].	1.66676e-125
NZ_CP041036.1\|WP_140233315.1\|732105_732840_+\|ZIP-family-metal-transporter	gnl\|CDD\|223505	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism].	3.95133e-16
NZ_CP041036.1\|WP_137222993.1\|721948_722983_-\|glycine-betaine/L-proline-ABC-transporter-substrate-binding-protein-ProX	gnl\|CDD\|236852	PRK11119, proX, proline/glycine betaine ABC transporter substrate-binding protein ProX.	0
NZ_CP041036.1\|WP_140233303.1\|711170_712280_+\|IS91-family-transposase	gnl\|CDD\|377437	pfam04986, Y2_Tnp, Putative transposase. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801. This is a rolling-circle transposase.	8.23498e-59
NZ_CP041036.1\|WP_140233316.1\|732978_733470_-\|DUF1097-family-protein	gnl\|CDD\|368942	pfam06496, DUF1097, Protein of unknown function (DUF1097). This family consists of several bacterial putative membrane proteins.	8.23903e-25
NZ_CP041036.1\|WP_137223017.1\|708082_708853_+\|ABC-transporter-permease	gnl\|CDD\|237896	PRK15066, PRK15066, inner membrane transport permease; Provisional.	8.25511e-165
NZ_CP041036.1\|WP_140235505.1\|708967_709927_-\|integron-integrase	gnl\|CDD\|131303	TIGR02249, Integrase/recombinase_E2_protein., integron integrase. Members of this family are integrases associated with integrons (and super-integrons), which are systems for incorporating and expressing cassettes of laterally transferred DNA. Incorporation occurs at an attI site. A super-integron, as in Vibrio sp., may include over 100 cassettes. This family belongs to the phage integrase family (pfam00589) that also includes recombinases XerC (TIGR02224) and XerD (TIGR02225), which are bacterial housekeeping proteins. Within this family of integron integrases, some are designated by class, e.g. IntI4, a class 4 integron integrase from Vibrio cholerae N16961. [DNA metabolism, DNA replication, recombination, and repair, Mobile and extrachromosomal element functions, Other].	1.50528e-105
NZ_CP041036.1\|WP_140233310.1\|728870_729890_+\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.03129e-65
NZ_CP041036.1\|WP_140233305.1\|713567_714611_-\|IS110-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	3.84266e-20
NZ_CP041036.1\|WP_140233313.1\|731655_732096_+\|DUF2202-domain-containing-protein	gnl\|CDD\|153107	cd01048, Ferritin_like_AB2, Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.	2.56395e-44
NZ_CP041036.1\|WP_140235506.1\|726181_728215_-\|cytochrome-C	gnl\|CDD\|274617	TIGR03507, decahem_SO1788, decaheme c-type cytochrome, OmcA/MtrC family. The protein SO_1778 (MtrC) of Shewanella oneidensis MR-1, and its paralog SO_1779 (OmcA), with which it intteracts, are large decaheme proteins, about 900 amino acids in length, involved in the use of manganese [Mn(III/IV)] and iron [Fe(III)] as terminal electron acceptors. This model represents these and similar decaheme proteins, found also in Rhodoferax ferrireducens DSM 15236, Aeromonas hydrophila ATCC7966, and a few other bacterial species. [Energy metabolism, Electron transport].	1.32394e-24

>NZ_CP041036.1|WP_140233308.1|719157_720135_+|transposase
MARPRQTIVSLDDTPYYHCCSRVVRKAFLCGIDNSTGENFEHRREWVDSRILELATIFAIDICAYAVMSNHLHVVLKIDADKAKGWSDKDILIQWHKGFKGTLLTHKFVKDEDLNEFEHKTVNDCVTQYRQRLVDISWFMRSLCEPIARMANKEDKCTGRFWEGRFKSQALLDEAAVLSCMAYVDLNPIRAKMATTPETSDYTSIQRRITSAIKGEQPTALLPFVGNERLDMPNGLMFSVKDYIVLVEDTGRIIREDKRGAISSTSQDILNRLNIPADNWLKITTEFGSLFKGAVGSLPVLTEYCEHLERKRRQGASNCQRWLCA
>NZ_CP041036.1|WP_167495974.1|717474_718611_+|DUF2971-domain-containing-protein
MMLKRGEVYFASASELNDRHECRARYLFNAPKEVWTRFVDYVLCKVSSKYPLYQSPQDAYKLIELAEPIFDAGYSQIKKRNLTVYDAVQLFNYGFEAVLGENFSPEEKKKIRQYTESYLLGLSESELVENKHICSFSKNAINPTMWGHYGAAETGFVVIYESSDGFVDVESTLPNLSGYREKEEGWHEIGSYNNESLMLKDVIYSRQPCKVNAFERLIHKFRFSEREAHYDVPESFLGMIDQMEVNKVGLVKFTDWKYEQEVRLLFPTYEELPSEHRCLKVNSCHIKGVIFGPKTSDSSKERVLMACAHLLELAKDLPSLAVFQALESHDSYSCQVAPVGMVSKFFSSKLLPLTEYERLNLDQKEYLGKLGKSIIEQS
>NZ_CP041036.1|WP_167495973.1|715125_715686_+|SMI1/KNR4-family-protein
MICCGNKISSPDFIDGTAYFVCNECGNVREIKNYRTYTPEESLVYFENKYGLNLPSKYIEVSGSRSTKVIKLNSTDIESLNFYFDDGFYEIGRFASIDPNHKNSIYDNISSGREWGLQNKFIPLEGDGHTWLALDYRESNVEPKVVVTETDDGNSLVVANSFDEFISNLLRYEEVYDLNGNIIYKK
>NZ_CP041036.1|WP_119969152.1|714811_714991_+|hypothetical-protein
MNKQTKENLAEAALIGTGLLSKFALLKSMTESKTLTIMVILGLLFFSGFILFLVKMAGA
>NZ_CP041036.1|WP_140233305.1|713567_714611_-|IS110-family-transposase
MRFYNNSHPYYCGIDLHARLLYVCIIDSKGEVVIHKKIGADKDDLLLILEPYIGNVIVGVECMHCWYWVSDWCAELGIDFILGHALYMKAIHGGKTKNDKVDSFKIATLLRGGNFPIAYDYPSEMRAARDLLRRRMKIVRHGAMLKGHVVNTNSQYNLPATELNLKNISARQKLREQYQDPIVQRNIDLDMALLDCYAKELAQVEWFIEKQAKNHNPVYLELLKTVPGIGKILSLTILYEIGDISRFESVQKFASYSRLVKCKAESAGKTYGTNGNKIGNAHLKWAFSEAAVLYLRGNDKARNYLNRLQKRMSKAKALSALAHKLGRCVYFMLKNKTVFDEQRFLKG
>NZ_CP041036.1|WP_140233304.1|712623_713061_+|hypothetical-protein
MEFYPPKGSSFAIRLLRMVIFVSMVFVLSKLLYEVNQLNHYPAYLNDIVFVVLCITLGWFFRIKNTWEYSEQGLIISADANLFGFVFIVAKLNGVNKYQFRLWNHDSHSFTLNSDLTINICFKSPEKIAVGGCHLLCKNKEIKPN
>NZ_CP041036.1|WP_140233303.1|711170_712280_+|IS91-family-transposase
MAHYHLSDILQTHYGHYQQHHRLSQQQRLVCQRILACRTAALGQQQWQCNQCHYQQSVFCSCRDRHCPRCQGKQTQAWIEKQQQQVLHCRYFHLVFTLPHELNSLTQTDEQAKLVYSALFEAVWQTLSQFGMTRKHLQGQLGCTAVLHTWGQTLTQHIHLHCLIPGGVVTEQGLWRSVKSDYLFPVKAVSTVFKAKMLAALRQRELTIPEANNLINKAWCVYSKACLYKAETVVAYLGRYTRKGMLHESRLKAVTKDRIDISYTDYVDNQRKIMQLTPEELIRRYLLHVLPKGVMRIRHFGFLANSCRRKRLAKIREQLGSKAKDIPSAITDTLGHWCCPQCANGRLMFMGLVPLLTMLAREAKLKLSG
>NZ_CP041036.1|WP_140233302.1|710329_711166_+|tyrosine-type-recombinase/integrase
MLVQTQLFHDEITLRRYSERTRKAYLYAITKLAEHYNQSADTITEPQLSDYFRHLNLERQLSRASIQLQLNGIHFYFEHILKRQFRIDVCLPRPSQKLPQVLSKQDIGQLLQHCPNQKYHAMIALCYGCGLRVSELVNIKVSDIDGQRQLLKVCQGKGAKDRLVIISPSLLNLLRHYWLKYHPQTWLFGVHSHGNTYPLDVSTVRKTLKKAALAAGITKPCSPHSLRHAYATHQLAAGMLLNQLQHQLGHKSIKTTERYLHWSPELGHKGGDLLADLG
>NZ_CP041036.1|WP_140235505.1|708967_709927_-|integron-integrase
MAGSGYIEAIRQQIRVRHYSYQTEKSYLYWNRYFIRYFKFTAAKHILPTHIEQFLCFLANERRVSSSTQQQALCALVFAFKHVLAIDTDNLQFPYAKTPTRIPQVLNDVEAKQVIDNLHGKYQLIGCLLYGAGLRLTEALSIRLKDIDFENRTLFVFRGKGKKDRVCILPKMTIDPIQQQMQHVRETHAHDLSQGLGMASLPPSLLKKFGTSAKQLHWQYLFPSIHCVSHPVNDYRCRHHIDPTTFRKALKKAVQKTTITKRITAHTFRHSFATNLLRRGHDIRTVQELLGHNDVKTTQIYTHVAGLHQTGVQSPMDYS
>NZ_CP041036.1|WP_137223017.1|708082_708853_+|ABC-transporter-permease
MNSLYFVAFKSILTKEINRFTRIWIQTLVPPAITMTLYFLIFGNLVGSRIGEMGGVSYMEFIAPGLIMMSVITSSYSNVASSFYSAKFQRNIEEIMVAPVPHYVMIAGYVGGGVARGLCVGLIVTLVAMFFVNINLHHAGLVVLTMFLTSVLFALGGLINAVFAKSFDDISIIPTFILTPLTYLGGVFYSLSLLPPFWQGVSSLNPVVYMINVFRYGFLGFADLSVPLSIAIMIGFCVSLWTLAYYLISRGIGLRS
>NZ_CP041036.1|WP_140233309.1|720565_721600_-|glycine-betaine/L-proline-ABC-transporter-substrate-binding-protein-ProX
MRIKKVIMGAAFAAMTMTGSAALADNHQPGEGVTVKPARATWDTGFFQEALVRRGLETLGYDVEKPKDLSNPIFYKTVTLGDVDYWTNGWFPNHDDQMPKGFYDKGEKVGFVVKAGGLQGYLVSKKEADKYNITSLEDFKRPEVKKAFDTNGDGKADLTACPPGWGCEKIITHHMDVYGLKDAINPVTASYAAGMASAMAGYKNGGPIFFYTWAPNWTIFKLKPGKDVVWINVPEIKPTKAQSSAIERMTVNGIEGAVSDPVKLGFVVSDIQIVANKKFTKQNPAARKFFEVFTLPLSDINEQNTRMNEGEKSAKDIQGHVDEWITKNQDKWNGWLTEARNAAK
>NZ_CP041036.1|WP_137222993.1|721948_722983_-|glycine-betaine/L-proline-ABC-transporter-substrate-binding-protein-ProX
MILKKVILGAALAAMTMTGSVALADTLKPGEGITVKPARATWDTGFFQEALVRRGLETLGYDVEKPKTLVNPIFYKTVTLGDIDYWTNGWFPMHNDQLPKNFDKKAEKIGYVMKAGGLGGYLVSKKEADKYNITSLEDFKRPEVKKAFDTNGDGKADLTACPPGWGCEKIITHHMDVYGLKDAINPVKAAYAAGMASAMAGYKNGGPIFFYTWAPNWTIFKLKPGKDVVWINVPEINPTKAQSSAVERMTIKGLEGAVSDPVKLGFVASDIQIVANKKFTKQNPAARKFFEVFTLPLADVNEQNTRMNDGEKSEQDIQRHVDEWIAKNQDQWNGWLTEARNAAK
>NZ_CP041036.1|WP_137222991.1|722979_723831_-|proline/glycine-betaine-ABC-transporter-permease
MFSFDERVIPLDAWITSLVDWLVEGYRWFFQMIKWPVDFILSSVSDGLLATSPLLVIALFGVIAWRVSGFKLAGFTLASLILIGLLGFWSETMITLAMVFSSVVFCTVVGVPFGIWAGRSDRVNNILRPILDAMQTTPAFVYLVPIVMLFSIGNTAGVLATIIFALPPLVRLTSLGIRQVHPELVEAALAFGATSSQVLLKVQIPLALPTIMAGLNQTIMMSLSMVVIAAMIGAGGLGAPVVLGLNTLDIGLATVGGLAIVLLAIILDRITQSMATPKNKDVK
>NZ_CP041036.1|WP_137222989.1|723857_725096_-|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein-ProV
MENIMEKIVIKNLYKVFGSDPRKGVKLLEQGKSKEEIYEQTGLTVAVQGASFTVNKGEIFVVMGLSGSGKSTLVRMLNRLIEPTSGEVLVDGENILKMNKDELVRFRRSKTSMVFQSFALMPHQTVLENAAFGLELDGMDKKQREERALDALKQVGLEGLENAYPKELSGGMQQRVGLARGLAVDPDILLMDEAFSALDPLIKTEMQDELLKLQDRHERTIIFISHDLDEALRIGDRIAIMQGGRVIQVGTPEEILQNPADDYVRAFFRGVDPTGVISAGDIARDTHPTVVWHTKAGSPRATLEMLSIKDREFAYVLDSEHRFLGVVSSDSLRDAIDQGNGTSKLEHAFLTEAESVQETDSLQDILPLVASHSWPIPVVNSENRYRGVVSKNLFLRTLNRAEKGTYFEQSAS
>NZ_CP041036.1|WP_140235506.1|726181_728215_-|cytochrome-C
MKRFKSKKLAYLVALALTSLLMGCDGDDGAAGVDGVDGVDGQPGDSWTLPVVTSSTETNVKVINYILGEGSISYEFEVTNENGELVNGLIDAEGKVAALTDKGFINNRNEDPINEVADNIHIGGAVTMSTEGATLTALGDGHYQFTAPMLGVNTGTEGIVWLRVGGNSESGIARSYELVVNKPEGAFSTTTEACYACHVDYSTSPNRHASYVAQGMDGEVTFVEGCLTCHGSVSRDMVNEEGFSTGSYASNTLSKIGHINHQEFETGFSVMNCSSCHTEPTININVAGPGCIDCHDTGDIAGDIIPGNGSDLRALHEAKSAITSNKALADTYKVTGTAPAWFSDSGDAGQWCTTLSLFEIDAATGAETLVNIHDLFDESQTTHNPDKPINYVGSYFHGVYNNSVIGRITDAYEYSYDAEGRKTMCYAISAGHGLPPVAGSTPDLSAWPDAGLMASLRVSFTAKDYMGAEADVVTIHGYTDVTSQADGSVTDYDRRHSVGTDSCTTCHNNLSNYHKNGNFANGGLGCVACHNNGQDRSAKNSAPGFGPMVHSMHWGVGSEKLNDDGTPNVASVIAPQTSCVACHDNGVVDLKTVPNQFMRAKAFNDGDSTKMASPITANCFACHNDDYALAHMVQNGGTTTEEVPATEWYKLNASESCATCHAEGRSSGIEKYHNFTR
>NZ_CP041036.1|WP_140233310.1|728870_729890_+|diguanylate-cyclase
MSISNLWASELEYRRTVLKAVLIVIIVAGSIFVVNNWFSGFKVYAMVELVVVCLCIGILVIHKSTPNLTLWCSVFLFSLYTVILIGIYSASFNSGLFTWLFIIPVLSYLLLGIKLGTIYTSVYMATGVAILIYALLFNIADIYPITIANIALCLAAIWALSFSYESKRAEAVERLQQMASVDPLTGLNNRLLLDSIFEMLCQSLPDKQQSVSMLLLDLDYFKKINDQFGHDVGDKVLVEVSKLINDMRRRNDWAFRFGGEEFCMLIPNTSLQQAEQIAERLRIAIDKITTVDDNKLNISISIGVARWPDDGSQLSQVYKAADERLYKAKELGRNKVVSH
>NZ_CP041036.1|WP_140233311.1|730427_731033_-|hypothetical-protein
MNIDTGDGINVDISYIAEQNHRYAIHLSTFQNVITYHNGTYEIANIGEHSPFETVDFWRNISLAAEILLKACLLKHNILFFKKRAHSEYGETVTALSNVWLDGILKKLEINYVAQINTGTISTALKNAENKLFEQIQLPPQNTKLISQMFYVIIRTRRNRNSHFFFPNQSHINIAEIEMLFLPLLNQLEEVYGLPSYQDEN
>NZ_CP041036.1|WP_140233313.1|731655_732096_+|DUF2202-domain-containing-protein
MSENVNNALIEAINDEYKSRATYRAVINKFGEIRPFINIVAAEGRHIEALLPLFVKYNVAIPIDDWDSRIKTPATILEACQLGVADEIENAQMYDRLLELTIGYPDIQAVLKQLQRASKENHLPAFQRCVERGGRGQQNRRGQCCK
>NZ_CP041036.1|WP_140233315.1|732105_732840_+|ZIP-family-metal-transporter
MENTFWTALATSSLAAVVTTVGIYTVRKYVDWGQRNITYFMCFAAGVLISASFLHIIPKSLSMNPNAAPYLLVGFFGLHLFNRFVTAFVCQKDPEKEQYGIGLVPMVGIGFHSFIDGFIYSIAFTVSIFTGFLATAGMVLHEFPEGIITYLLLVKGGFSERKAVILSFFAAALTTPVGMLVSFPLINQIDKPMLGALLSLSAGALIYVGATHLLPKAEQEHKKYSFVALGGGILVAIIIVLSKG
>NZ_CP041036.1|WP_140233316.1|732978_733470_-|DUF1097-family-protein
MANRWQIAISAGFLAAVWAGLADVFQLVTWVGFLGCSTFFAQTETGAKGMIMAIMTNLSGVFWGWLIIAGSGVLGSPMISYALTGIVTAFMCLQASHKNFAFIPGTFIGCCITFALNADIAAIIPPLVIGAALGYSMSLLTGLLITLTDNTTESLKDETVEDI

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Crispr_ID: NZ_CP041036_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041036_2

1723406-1723522

Orphan

Consensus_repeat	Method
AAATAAAAGTGGACTGCCACAATAAATCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041036_2

>merge|NZ_CP041036|2|1723406-1723522|CRISPRCasFinder
AAATAAAAGTGGACTGCCACAATAAATCGTGTGATTTAACATCTTCTACTAAACTCAAAAAAGTTTTAAATGTAGGAGTTTGTTATGCAAATAAAAGTGGACAGCCACAATAAATCG

>NZ_CP041036|2|2|1723406-1723522|CRISPRCasFinder
AAATAAAAGTGGACTGCCACAATAAATCG	TGTGATTTAACATCTTCTACTAAACTCAAAAAAGTTTTAAATGTAGGAGTTTGTTATGC
AAATAAAAGTGGACAGCCACAATAAATCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041036.1\|WP_140233901.1\|1731306_1732404_+\|succinyl-transferase-OpgC	unknown	unknown	gnl\|CDD\|226992
NZ_CP041036.1\|WP_140233898.1\|1728767_1729886_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|131032
NZ_CP041036.1\|WP_140233895.1\|1725062_1725641_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041036.1\|WP_140233889.1\|1715312_1719011_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|182330
NZ_CP041036.1\|WP_167495996.1\|1725963_1726113_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377059
NZ_CP041036.1\|WP_140233893.1\|1722787_1723285_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041036.1\|WP_140233897.1\|1728547_1728775_-\|DUF3343-domain-containing-protein	unknown	unknown	gnl\|CDD\|378728
NZ_CP041036.1\|WP_140233890.1\|1720923_1721307_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041036.1\|WP_137221345.1\|1732694_1733072_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|366361
NZ_CP041036.1\|WP_140233896.1\|1727393_1728194_+\|transposase	unknown	unknown	unknown
NZ_CP041036.1\|WP_140233887.1\|1713101_1713863_+\|TSUP-family-transporter	unknown	unknown	gnl\|CDD\|182593
NZ_CP041036.1\|WP_140233888.1\|1713936_1715316_+\|exonuclease-subunit-SbcD	unknown	unknown	gnl\|CDD\|182871
NZ_CP041036.1\|WP_140233894.1\|1723691_1724582_+\|RHS-repeat-associated-core-domain-containing-protein	unknown	unknown	gnl\|CDD\|274730
NZ_CP041036.1\|WP_140233886.1\|1712146_1712824_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187643
NZ_CP041036.1\|WP_140233899.1\|1729885_1730245_-\|sulfurtransferase-like-selenium-metabolism-protein-YedF	unknown	unknown	gnl\|CDD\|274630
NZ_CP041036.1\|WP_140233892.1\|1722162_1722456_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041036.1\|WP_140233900.1\|1730690_1731107_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP041036.1\|WP_140233891.1\|1721303_1722149_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274730
NZ_CP041036.1\|WP_140235543.1\|1719330_1720605_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|236946
NZ_CP041036.1\|WP_140233885.1\|1711860_1712064_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|180240

Protein	Function_ID	Function_description	E-value
NZ_CP041036.1\|WP_140233901.1\|1731306_1732404_+\|succinyl-transferase-OpgC	gnl\|CDD\|226992	COG4645, COG4645, Uncharacterized protein conserved in bacteria [Function unknown].	0.00636639
NZ_CP041036.1\|WP_140233898.1\|1728767_1729886_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|131032	TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. [Unknown function, Enzymes of unknown specificity].	1.06227e-122
NZ_CP041036.1\|WP_140233897.1\|1728547_1728775_-\|DUF3343-domain-containing-protein	gnl\|CDD\|378728	pfam11823, DUF3343, Protein of unknown function (DUF3343). This family of proteins are functionally uncharacterized. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.	8.15109e-12
NZ_CP041036.1\|WP_140233894.1\|1723691_1724582_+\|RHS-repeat-associated-core-domain-containing-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	8.55303e-29
NZ_CP041036.1\|WP_140233885.1\|1711860_1712064_+\|hypothetical-protein	gnl\|CDD\|180240	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated.	0.000472704
NZ_CP041036.1\|WP_140233889.1\|1715312_1719011_+\|AAA-family-ATPase	gnl\|CDD\|182330	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.	0
NZ_CP041036.1\|WP_140233888.1\|1713936_1715316_+\|exonuclease-subunit-SbcD	gnl\|CDD\|182871	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional.	0
NZ_CP041036.1\|WP_140233887.1\|1713101_1713863_+\|TSUP-family-transporter	gnl\|CDD\|182593	PRK10621, PRK10621, hypothetical protein; Provisional.	1.38179e-99
NZ_CP041036.1\|WP_167495996.1\|1725963_1726113_+\|hypothetical-protein	gnl\|CDD\|377059	pfam03527, RHS, RHS protein.	0.00346303
NZ_CP041036.1\|WP_140233886.1\|1712146_1712824_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187643	cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR. These proteins include members identified as KDSR, ribitol type dehydrogenase, and others. The group shows strong conservation of the active site tetrad and glycine rich NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.20283e-57
NZ_CP041036.1\|WP_140233899.1\|1729885_1730245_-\|sulfurtransferase-like-selenium-metabolism-protein-YedF	gnl\|CDD\|274630	TIGR03527, selenium_YedF, selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.	3.25466e-50
NZ_CP041036.1\|WP_137221345.1\|1732694_1733072_+\|VOC-family-protein	gnl\|CDD\|366361	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.	1.25516e-11
NZ_CP041036.1\|WP_140233891.1\|1721303_1722149_+\|hypothetical-protein	gnl\|CDD\|274730	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.	1.66101e-29
NZ_CP041036.1\|WP_140233900.1\|1730690_1731107_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.44129e-12
NZ_CP041036.1\|WP_140235543.1\|1719330_1720605_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|236946	PRK11649, PRK11649, putative peptidase; Provisional.	2.63214e-97

>NZ_CP041036.1|WP_140233893.1|1722787_1723285_+|hypothetical-protein
MANILLRLLGVIMLLASYSSNASLVITASQINEINDKLAKAASNCDFKASTKFYFKNTKFFNYSLISGVESVEEQNFDEAITSIKDAMAACPLKLDREEPIVEDIKVDDSGQSAEFIFESLHYLRAKDGTMYQSHAKGKTIFGVIDGRIVILESHYKGLSFEVVE
>NZ_CP041036.1|WP_140233892.1|1722162_1722456_+|hypothetical-protein
MTIWKNLILTWVLVLGAIILYSIAVTGGVNANDNSRYLGIFFWVITILVSIYPLGYLIYKRQEYDTFETIKFFIIALLCPFIGSIYLFFKNNKNRSK
>NZ_CP041036.1|WP_140233891.1|1721303_1722149_+|hypothetical-protein
MKNLLQILAMLILFPSSIAVAGVTFVHSDLLGSPVAETNSAGQIVTLSHYKAFGEEIEQKRDDVGYTGHKYDADLGLSYMQARYYDPVIGRFYSNDPIGYRDVHSFNRYAYANNNPYKYTDPTGMSSYNPQGMVQNVQGLRESIPKSGIVDATTVKVGMGAGLQVKTQNVPGVGSFDAGGSVAVSSVMTTDKAAQGIEFSADAGLNASDSTGSMTGKVQLGKAEALVQPQNGTMTTKTEGAKATGTLNAGNTSVDNSGKVKVGGHIGLIKVEVEVDTSKLN
>NZ_CP041036.1|WP_140233890.1|1720923_1721307_+|hypothetical-protein
MNDKLIAKDGTGNTNTAALSAPTASMTCNPSSCQTTKTGSGTASITLTLSKSCPKGCETEWYYTGHSIFNNTGGVSPKTFSYYCRNVSESKTGTVGAIITDNSTGLTTKVSKSLTITCKVSGGGIEL
>NZ_CP041036.1|WP_140235543.1|1719330_1720605_+|peptidoglycan-DD-metalloendopeptidase-family-protein
MGFQRPDVSSLNLPNLHKKILLASVFVVGAALLWPTQQEFSSQRIPVAIDIDSLLPHIAQQDQSPVIVYQAKPILNHVIESGDTLSKIFELAGIDQRTMYKVLEADLEVLALDTLLPGNRIQFWGNANGELEKLELYFNPAHQVVFTRFQDGSYEVKDINIDGVWQNRIVGGEINGSFYVSAKNAGLSAAEIQKVESVLKTKLNFSRELRAGDTFSVLVNDQFVEGEPSGITSIEGIRINTGRRDITAFQNTDGNYYDMNGQSLTPAFQRIPLKRQYRLSSRFNPNRKHPITGRVRPHNGTDFAVPVGTQVVAPGDGVVTLVKKHAFAGNYIVIEHDNKVRTRYLHLSKFLVKRGQRVKRGQLIGLSGNTGASTGPHLHYEYIVNGHPVDAMKAKIAEAKVLPQKQLQAFQTLVRSRSMMMDLG
>NZ_CP041036.1|WP_140233889.1|1715312_1719011_+|AAA-family-ATPase
MKILSLRFKNINSLKNEWKIDFTQSPFAENGLFAITGPTGSGKTTILDAICLALYHRTPRLSNISKTTNELMTRGTAECLAEVEFEVKGVAYRAFWSQRRSRDKADGNLQDAQVELAILSDGKILASQIKRKTELIEQITGLDFARFTKSMMLSQGQFAAFLNADANDRAELLEELTGTEIYGLISAKVHQNFSDAKTNLKVLEAKLGSVELLDQQQLVAQQQQIEQLNQAIVHQQQQLSELSQFIAWADNIQQAQQLLTKANDEQQQALSRQQQHRDALIQLEHSEPAQQILPLFEQQQKVQQKVQILTTQIDQLSQQTGQAEVELQNHKHKQSQSQLQVEQVSQAHKTLLSLIDQQVQPLDQQINQLNYQLSQVKLTQQQTEQQQQQAAEKQQQLLTQQQSLTLAKQQIQQQLESLPQGQEVAKKFAAWQTQYNQAIQLNQQISQTHSQIALQQDSIKQTQSRLTDVVPQVTQGQVALTQATVKLSDSQQVLRELLAGQEESQLNSDYQQLLDQQAGRYQLSQLFSQFARQQQQCQQLTTESGQFKIELQALAESLSVVRTQWSEKNQQVKDVQTILQQEQHIANLTLERAKLKAGEPCALCGSTEHPLVERYEALNVSATEQRAQQLQAELDAIKQQGEQLKNQQTALQVNYDNSLKQLSQVQIDLHDTQQQWQQQTQLLSVTLRLDLAQQDALNTFMAQAESKQQQLATTISLLNQCQKNVHQHQQSFAQAEQTLAKHVNQQGLLQQQLDNLQQGLLNYQQQIDTVSGQQTQLITALETQITATGLTPPSIEQAIVWLNELQQQLEQWSQAQQQATDNQQQLSITAEKLATNQLQVAAFSAQLTSVSEQVDKANTQLRAVQQQRQALFADKVIEDEKQLSQDQLEQAQQAFDVIQQQLQAADKQLASLQVQQQSLMTQASEASQECQQLQSQWQTALQASPFADQQAFEQAILTPQERQALQQLKLQLDNDIVKANTITEQALMRQTELMQLGEQQGYNAAQHAEIAQQHQTIETKLQQDKQTVWRISLELEQDATKRVGQQQLLAEQARMQQDYDDLAYLHSLIGSQKGDKFRKFAQGLTLDHLVALANRQLERLQGRYLLERKESDALELQVLDTWQGDAVRDTRTLSGGESFLVSLALALALSDLVSHKTSIDSLFLDEGFGTLDSQTLDTALDALDNLNASGKMIGVISHVEAMKERINVQVKVNKMNGLGISKLQNEFAVNGS
>NZ_CP041036.1|WP_140233888.1|1713936_1715316_+|exonuclease-subunit-SbcD
MRIIHTSDWHLGQYFYGKSRAAEHQAFMAWLLEQITLHQVDALIVAGDIFDTGTPPSYARALYNQFIVQIQQTGCQLIILGGNHDSVSTLNESRHLLACLNTTVIPGAFDNVNEHVMPLLNRQGEVGAILCGLPFLRPRDVVLSESGESSVDKQRKLGDAISELYQRCFEQAEQLNSTFSTPVPIIATGHLTTVGASTSESVRDIYIGSLDAFNAAHFPAANYIALGHIHRPQVVAKSEHIRYSGSPIALSFDELSTHNEANKSVFLVEFADTKLSQVTPLMVPMFQPMQVVKGDLDSIEQQLKAFAPQTETTSMTWLSIEVSQQDYLSDLQSRIADMTQDKAVEVLQLKRARSQRQQHIKQLDNETLSELSVNDVFARRLAQEQFDTEAQQAQLTRIKQCFSQVVSDVEAERHTQETAASHVLQETMTHNADEEDLIAMSTETSTEVITDDMAEGEQS
>NZ_CP041036.1|WP_140233887.1|1713101_1713863_+|TSUP-family-transporter
MFELTLQLAVVLFAVALIAGFIDSIAGGGGLLTIPALMWAGLPPAAALGTNKLQACGGSFFASLYFVRNGLVDLRSIKLSLLCAFIGAAIGTILVQMIDAKLLEVVLPFLILAIGCYFLFSKKISELDRQQVLTPSVFAFTAALGVGLYDGFFGPGTGSFFALAFVSLAGFGLAKATAHAKLLNFATNIASLIFFLIGGQVVVVLGLIMLVGQSIGATLGSRLVVTKGVKIIKPLVVVMSLGMSGKLLWSQYM
>NZ_CP041036.1|WP_140233886.1|1712146_1712824_-|SDR-family-NAD(P)-dependent-oxidoreductase
MMVITGASSGLGAALTQLYAAENRPLLITGRSEQKLADVMAQLTPSQQNNVHTHTADLCVTEDVSQLFSRLSTPPSSVIHCAGSGYFGPIEQQTPQAINQLIDNNLTSSILVLRELVSRYRDHKVNVVVVMSTAAQAGKANESTYCAVKWAVKGLVESLRLELKGCPMKLIAVYPGGMATDFWQTSGKDIDTSNFMTAKEAALMLKQALIATEHGYVSDITINRG
>NZ_CP041036.1|WP_140233885.1|1711860_1712064_+|hypothetical-protein
MALNATLIGQIIFVLTLVVVYFTLKFAKGKTTNLPLVGFYAIVLNLIFAPAGWIYCWYWSTKPLLPK
>NZ_CP041036.1|WP_140233894.1|1723691_1724582_+|RHS-repeat-associated-core-domain-containing-protein
MLILFTSSIAVAGVTFVHSDLLGSPVAETNSAGQIVTLSHYKAFGEEIEQKRDDVGYTGHKYDADLGLSYMQARYYDPVIGRFYSNDPVGYAGNPHSFNRYAYANNNPYKYTDPNGEFPVLGFIAGVALEVTRQALTGEIKDTSFSGIAKNVGKALVSGAAGATGAGLASKAASLSLAGRTAVNTAGGAAIGASSTVANNAIDGKNLTDNVGTGALIGSAAGAAGSLVGDGIDAAKTMVNQKAFNKLSVSDQNLIQHVKQATGTSSSNTVGVADAVGNAVANSNGVADSCGVQKEC
>NZ_CP041036.1|WP_140233895.1|1725062_1725641_+|hypothetical-protein
MQEEKVTWLQLLLGTLLLSIALIINYVTPAFSLFDGKIDERAMAHAIGFASMTVFGFGWLNLKRNQALVIISISFIGGLAIAKFYSPSLAKLLITLTIFSIVNLFSPFFFNYLKDKFKYVSLAFVFIAVVFTSFYWEIHVQPNLGGYPDLLPRYYVQFQLAMDLVGIILGLVLIIRSNRQFFLKCHNEAKAP
>NZ_CP041036.1|WP_167495996.1|1725963_1726113_+|hypothetical-protein
MLILFTSSIAVAGVTFVHSDLLGSPVAETNSAGQIVTLSHYKGFGEEIE
>NZ_CP041036.1|WP_140233896.1|1727393_1728194_+|transposase
MPRPRRTQISVEDTPFYHCCSRVVRRAYLCGDDKISGRNYNHRRGWVESLLLELVEAHEVLRLKHSIATYRSRLCDISWFMRCLNEPIARQANQEDNCTGRFWEGRFKSQALLDEAAVLACMAYVDLNPIRAKMVESPEQSDHTSIQLRIKAALKGEQPKSLLTFIGNERNNQPKGIAFSLQDYLELVDDTGRIIRNDKRGAISANSTKLLARLNIPQDNWLKLTTEFGKLFHGPVGTLQELTHYCEHLEKRRRHFASCCQHLKAG
>NZ_CP041036.1|WP_140233897.1|1728547_1728775_-|DUF3343-domain-containing-protein
MDNNILYLFNNTRAVILAHKAIRQMNLKCLIIPVPRSISSQCGMCIETKKSNEVDIDTTLDELNIAFKKCSGYSK
>NZ_CP041036.1|WP_140233898.1|1728767_1729886_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MMNLYFDNGATSFPKPPQVSQAIAQYLDVDGAPYGRSFYEKAFKVSSEVEECRDLLAGTLSIPNPERLSFTPNATFALNSVIKNFNYKHKRVLVSPLEHNAVMRPLHYLKEKMGIEVEFLPARKDGTIDIDKVNINKCDLVIISHMSNVNGVIQPIKALKHILEDVPILLDAAQSAGHIAINVEDWDIDFLAITGHKSLLGPTGTGALYTSPKYTIEPLLHGGTGSHSEFLSMPEDYPDLFEAGTPNIAGIYGLHAALKNRPQSLHSQDAFNTLLNKLAAIDIIKLYVSTDRNNQGELFSFKSKDHSVSELAFTLYKDFGIQTRVGLHCAPVAHSYLNSFPEGLIRIALSPYHSDEDVDYLYNAIKRCVSHG
>NZ_CP041036.1|WP_140233899.1|1729885_1730245_-|sulfurtransferase-like-selenium-metabolism-protein-YedF
MKQNKDKLVRSVINISSSKMGAGDDDLGDILMQSFINSLIQLDPLPSTIILYNSGVLLCTNDSAVLESLNALEAKGVNILLCGTCADFYNIKDKIGAGTISNMYTIVETLNRSDKIINP
>NZ_CP041036.1|WP_140233900.1|1730690_1731107_+|GNAT-family-N-acetyltransferase
MNIDIIYHEDNETVALLTAGLRQFNVEHLGDETTEPLTIVARNDEGEIIGGVAGRTIYNNFLINVVWVDDLYRGKGLGQELMKIAEVVAIKRGCLIAQLDTLDFQAPRFYQKLGFNIIGTVPKFAGSPARYFMMKQYL
>NZ_CP041036.1|WP_140233901.1|1731306_1732404_+|succinyl-transferase-OpgC
MNRIIGLDLARGIAIFFAMTSHTFSALHYNAGLSMNLVFRTSTPLFIVVFGFFLHRIYLRKMNESGFAFIKIKLWTRAVQCYVLYALSCILLGLSMQYSIAYTLRMMIFLGGTPFTDILKYYTLILISAPYLLLFISRYGLKYAIGLSFIPHILSFFSLLKPITFIPFGHYLSAMTYGGGEIVAGPSVLHSFVFILLGFYLSVVLQNEGSRSSIIKHDKNRHILMACVVLLSSLFALYATGNMTIDDLSGMSLRNSNAYPYFLFGCLSSILFIEFSLLTAHYVKQIYLSPLLLFGSSSLILFSFGNCILYSIYDEYQFTFLLYLLILFFFYFICRINFSLKKVPSKRFQFILKYISVGYVKLLIK
>NZ_CP041036.1|WP_137221345.1|1732694_1733072_+|VOC-family-protein
MNLNQVTLPVSNMNKAVSFYQILGFTLIVDTPHYARFECPMGESSFSLSLESEPMTHGAVIYFEHPKLDEWVNELLEKDIVFSQMPTDETYLWREAVLFDPSGNKLKLYWAGDNRLNPPWRVQTV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

664086 : 734706

Tupanvirus(12.5%)

protease,integrase,tRNA,transposase

attL 710240:710299|attR 718699:718787

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_140233277.1\|664086_665589_+\|tRNA	lysine--tRNA ligase	A0A2K9L3L6	Tupanvirus	1.3e-86	39.1
WP_140233278.1\|665724_667434_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_137223067.1\|667470_667935_-	transcriptional repressor	NA	NA	NA	NA
WP_137223065.1\|667980_668262_-	DUF134 domain-containing protein	NA	NA	NA	NA
WP_140235503.1\|668467_669406_-	WD40 repeat domain-containing protein	NA	NA	NA	NA
WP_140233279.1\|669718_670750_+	dihydroorotase	NA	NA	NA	NA
WP_140233280.1\|670926_674361_-	EAL domain-containing protein	NA	NA	NA	NA
WP_140233281.1\|675165_676614_-	DUF4892 domain-containing protein	NA	NA	NA	NA
WP_140233282.1\|676890_677571_+	hypothetical protein	NA	NA	NA	NA
WP_140233283.1\|677656_678160_+	hypothetical protein	NA	NA	NA	NA
WP_140233284.1\|678318_679557_+	hypothetical protein	NA	NA	NA	NA
WP_140233285.1\|679655_680261_+	hypothetical protein	NA	NA	NA	NA
WP_140233286.1\|680463_682308_-	hypothetical protein	NA	NA	NA	NA
WP_140233287.1\|682459_683092_-	response regulator transcription factor	NA	NA	NA	NA
WP_140233288.1\|683419_684301_-	23S rRNA pseudouridine(2604) synthase RluF	NA	NA	NA	NA
WP_140235504.1\|684431_685280_-	DUF72 domain-containing protein	NA	NA	NA	NA
WP_140233289.1\|685557_688605_+	penicillin-binding protein	NA	NA	NA	NA
WP_140233290.1\|688719_689160_-	DUF3429 family protein	NA	NA	NA	NA
WP_140233291.1\|689288_689774_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_140233292.1\|689779_689962_-	hypothetical protein	NA	NA	NA	NA
WP_140233293.1\|690242_691499_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	4.8e-42	30.1
WP_140233294.1\|691704_693771_+	DUF839 domain-containing protein	NA	NA	NA	NA
WP_137223045.1\|694185_694572_+	VOC family protein	NA	NA	NA	NA
WP_140233295.1\|694753_697075_+	TonB-dependent receptor	NA	NA	NA	NA
WP_140233296.1\|697089_697770_+	Fe2+-dependent dioxygenase	A0A127KM56	Cyanophage	1.1e-16	32.5
WP_140233297.1\|697989_698931_-	polysulfide reductase NrfD	NA	NA	NA	NA
WP_140233298.1\|698927_699614_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_137223035.1\|699620_700082_-	nitrite reductase	NA	NA	NA	NA
WP_137223033.1\|700156_700621_-	DUF2726 domain-containing protein	NA	NA	NA	NA
WP_140233299.1\|701108_702071_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_140233300.1\|703222_704020_+	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_140233301.1\|704016_704319_+	AzlD domain-containing protein	NA	NA	NA	NA
WP_137223025.1\|704417_705857_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA
WP_137223023.1\|705883_706543_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_137223021.1\|706550_707081_+	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	3.7e-12	31.0
WP_137223019.1\|707147_708083_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.8e-23	29.7
WP_137223017.1\|708082_708853_+	ABC transporter permease	NA	NA	NA	NA
WP_140235505.1\|708967_709927_-\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	2.8e-50	38.1
710240:710299	attL	NA	NA	NA	NA
WP_140233302.1\|710329_711166_+\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	3.2e-10	23.5
WP_140233303.1\|711170_712280_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_140233304.1\|712623_713061_+	hypothetical protein	NA	NA	NA	NA
WP_140233305.1\|713567_714611_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_119969152.1\|714811_714991_+	hypothetical protein	NA	NA	NA	NA
WP_167495973.1\|715125_715686_+	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_167495974.1\|717474_718611_+	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_140233308.1\|719157_720135_+\|transposase	transposase	NA	NA	NA	NA
718699:718787	attR	NA	NA	NA	NA
WP_140233309.1\|720565_721600_-	glycine betaine/L-proline ABC transporter substrate-binding protein ProX	NA	NA	NA	NA
WP_137222993.1\|721948_722983_-	glycine betaine/L-proline ABC transporter substrate-binding protein ProX	NA	NA	NA	NA
WP_137222991.1\|722979_723831_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA
WP_137222989.1\|723857_725096_-	glycine betaine/L-proline ABC transporter ATP-binding protein ProV	G3M9Y6	Bacillus_virus	1.5e-27	38.2
WP_140235506.1\|726181_728215_-	cytochrome C	NA	NA	NA	NA
WP_140233310.1\|728870_729890_+	diguanylate cyclase	NA	NA	NA	NA
WP_140233311.1\|730427_731033_-	hypothetical protein	NA	NA	NA	NA
WP_140233313.1\|731655_732096_+	DUF2202 domain-containing protein	NA	NA	NA	NA
WP_140233315.1\|732105_732840_+	ZIP family metal transporter	NA	NA	NA	NA
WP_140233316.1\|732978_733470_-	DUF1097 family protein	NA	NA	NA	NA
WP_140233317.1\|734004_734706_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_2

1755616 : 1765480

Faustovirus(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_137221298.1\|1755616_1756831_+	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	2.8e-31	30.8
WP_137221296.1\|1756903_1757287_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	5.4e-53	79.8
WP_137221294.1\|1757301_1757625_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	3.5e-21	41.1
WP_140233917.1\|1757680_1758205_+	co-chaperone HscB	NA	NA	NA	NA
WP_140233918.1\|1758273_1760133_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	3.7e-99	38.9
WP_137221288.1\|1760141_1760477_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_137221286.1\|1760647_1761544_+	30S ribosomal protein S6--L-glutamate ligase	I3ULC9	Synechococcus_phage	5.7e-37	36.2
WP_137221284.1\|1761718_1762150_+	nucleoside-diphosphate kinase	A0A167REB2	Powai_lake_megavirus	4.8e-18	40.9
WP_140233919.1\|1762960_1765480_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	1.1e-32	25.0

DBSCAN-SWA_3

2013877 : 2023000

uncultured_Caudovirales_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_140234051.1\|2013877_2016487_+	DUF87 domain-containing protein	S5VNE3	Mycobacterium_phage	8.9e-83	47.5
WP_140235554.1\|2016495_2017140_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_140234052.1\|2017148_2018480_+	AAA family ATPase	G3MBE0	Bacillus_virus	1.0e-79	38.7
WP_137220902.1\|2018472_2018847_+	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	3.1e-05	37.6
WP_140234053.1\|2018865_2020152_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	5.5e-94	42.9
WP_140234054.1\|2020872_2021211_-	TusE/DsrC/DsvC family sulfur relay protein	NA	NA	NA	NA
WP_140234055.1\|2021204_2021513_-	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_140234056.1\|2021509_2021866_-	sulfurtransferase complex subunit TusC	NA	NA	NA	NA
WP_140234057.1\|2021885_2022275_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	8.8e-19	38.6
WP_140234058.1\|2022340_2023000_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.1e-36	45.4

DBSCAN-SWA_4

3431794 : 3439287

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_137226333.1\|3431794_3432271_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	3.6e-30	47.0
WP_140234850.1\|3432394_3433498_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	5.7e-63	38.4
WP_140234851.1\|3433598_3434258_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	3.7e-25	32.0
WP_140234852.1\|3434322_3435468_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.1e-48	34.8
WP_137226325.1\|3435545_3435995_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_140234853.1\|3436104_3437358_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	7.8e-101	54.6
WP_140234854.1\|3437619_3439287_+	energy-dependent translational throttle protein EttA	A0A1V0SKJ1	Klosneuvirus	2.3e-39	26.7

DBSCAN-SWA_5

3746354 : 3792746

Vibrio_phage(33.33%)

integrase,portal,coat,protease,terminase

attL 3745252:3745265|attR 3794885:3794898

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3745252:3745265	attL	NA	NA	NA	NA
WP_140235008.1\|3746354_3747863_+\|coat	spore coat protein	NA	NA	NA	NA
WP_140235009.1\|3748342_3750823_+	EAL domain-containing protein	NA	NA	NA	NA
WP_140235010.1\|3750937_3753124_-	OsmC domain/YcaO domain-containing protein	NA	NA	NA	NA
WP_137225806.1\|3753602_3754619_-	hypothetical protein	NA	NA	NA	NA
WP_137225804.1\|3755226_3755454_-	hypothetical protein	NA	NA	NA	NA
WP_137225803.1\|3755782_3755995_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	9.6e-20	67.6
WP_140235011.1\|3756302_3756689_-	ribosome recycling factor	NA	NA	NA	NA
WP_140235012.1\|3756685_3757474_-	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_140235013.1\|3758089_3758302_-	hypothetical protein	A0A088C533	Shewanella_sp._phage	3.5e-14	61.4
WP_140235014.1\|3758335_3760114_-	hypothetical protein	A0A2I7QS09	Vibrio_phage	9.2e-148	44.8
WP_140235015.1\|3760113_3760416_-	hypothetical protein	NA	NA	NA	NA
WP_140235016.1\|3760408_3761332_-	hypothetical protein	A0A2I7S8P4	Vibrio_phage	4.8e-39	32.7
WP_140235017.1\|3761362_3763801_-	hypothetical protein	A0A2I7QRV0	Vibrio_phage	1.3e-288	62.0
WP_140235018.1\|3763835_3764213_-	hypothetical protein	A0A088C532	Shewanella_sp._phage	2.0e-20	46.7
WP_140235019.1\|3767881_3768250_+	QacE	NA	NA	NA	NA
WP_140235020.1\|3768359_3769079_-	hypothetical protein	A0A2I7S8N4	Vibrio_phage	3.3e-27	35.5
WP_140235021.1\|3769075_3769501_-	hypothetical protein	NA	NA	NA	NA
WP_140235022.1\|3769525_3770077_-	hypothetical protein	NA	NA	NA	NA
WP_140235023.1\|3770085_3770412_-	hypothetical protein	NA	NA	NA	NA
WP_140235024.1\|3770404_3770725_-	DUF2190 family protein	K7PJY3	Enterobacterial_phage	1.6e-13	47.7
WP_140235631.1\|3770838_3772866_-\|protease	Clp protease ClpP	A0A1W6JT88	Pseudomonas_phage	1.1e-176	52.1
WP_140235025.1\|3772831_3774391_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	2.9e-129	49.1
WP_140235026.1\|3774399_3774603_-	hypothetical protein	NA	NA	NA	NA
WP_140235027.1\|3774602_3776585_-\|terminase	phage terminase large subunit family protein	A0A1B0Z2K0	Pseudomonas_phage	2.5e-194	49.2
WP_140235028.1\|3776559_3777093_-\|terminase	terminase small subunit	O64316	Escherichia_phage	9.8e-37	50.0
WP_140235029.1\|3777096_3777420_-	hypothetical protein	NA	NA	NA	NA
WP_140235030.1\|3777518_3777956_-	hypothetical protein	NA	NA	NA	NA
WP_140235031.1\|3777955_3778423_-	glycoside hydrolase family protein	A0A1B1ITF9	uncultured_Mediterranean_phage	2.7e-38	53.6
WP_140235032.1\|3778863_3780174_-	hypothetical protein	NA	NA	NA	NA
WP_140235033.1\|3780446_3781184_-	hypothetical protein	NA	NA	NA	NA
WP_140235034.1\|3781445_3782468_-	hypothetical protein	NA	NA	NA	NA
WP_140235035.1\|3783125_3783710_+	Rha family transcriptional regulator	A0A1C9IHV9	Salmonella_phage	1.7e-18	48.1
WP_140235036.1\|3783888_3784515_-	hypothetical protein	NA	NA	NA	NA
WP_140235037.1\|3784630_3785254_-	hypothetical protein	NA	NA	NA	NA
WP_140235038.1\|3785566_3786862_-	FRG domain-containing protein	NA	NA	NA	NA
WP_140235039.1\|3786954_3787659_-	hypothetical protein	NA	NA	NA	NA
WP_140235040.1\|3788097_3788601_-	hypothetical protein	NA	NA	NA	NA
WP_167496043.1\|3788698_3789166_-	two pore domain potassium channel family protein	NA	NA	NA	NA
WP_140235042.1\|3789858_3790362_-	hypothetical protein	NA	NA	NA	NA
WP_140235043.1\|3790577_3790775_-	hypothetical protein	NA	NA	NA	NA
WP_140235044.1\|3790861_3791227_-	hypothetical protein	NA	NA	NA	NA
WP_140235632.1\|3791213_3791432_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_140235045.1\|3791486_3792746_-\|integrase	tyrosine-type recombinase/integrase	A0A067ZJC5	Vibrio_phage	7.4e-51	34.0
3794885:3794898	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041036

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection