CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041040	Microbacterium foliorum strain M2 chromosome, complete genome	4 crisprs	csa3,cas3,DEDDh,WYL	0	1	0	0

Cas Category Instructions

Results visualization

1. NZ_CP041040

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041040_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041040_1

701119-701216

Orphan

Consensus_repeat	Method
TCTCCTCCCGTGGGACAGATCTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041040_1

>merge|NZ_CP041040|1|701119-701216|CRISPRCasFinder
TCTCCTCCCGTGGGACAGATCTCCTCCCTGGGGCAGCGGTCCTCCCGTGGGGCAGATCCCCTCCCGAGGGCAGATCTCCTCCCGTGGGACAGATCTCC

>NZ_CP041040|1|1|701119-701216|CRISPRCasFinder
TCTCCTCCCGTGGGACAGATCTCC	TCCCTGGGGCAGCGGTCCTCCCGTGGGGCAGATCCCCTCCCGAGGGCAGA
TCTCCTCCCGTGGGACAGATCTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041040.1\|WP_140036192.1\|695860_696613_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226425
NZ_CP041040.1\|WP_140036198.1\|703435_704260_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041040.1\|WP_140036201.1\|706816_707476_+\|response-regulator	unknown	unknown	gnl\|CDD\|225107
NZ_CP041040.1\|WP_140036199.1\|704292_705519_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP041040.1\|WP_140036187.1\|690776_691061_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041040.1\|WP_140036194.1\|699352_700948_-\|flotillin-family-protein	unknown	unknown	gnl\|CDD\|225177
NZ_CP041040.1\|WP_140036202.1\|707515_707956_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NZ_CP041040.1\|WP_140036195.1\|701245_701674_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP041040.1\|WP_140036188.1\|691067_692000_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183051
NZ_CP041040.1\|WP_140036185.1\|688951_689791_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223377
NZ_CP041040.1\|WP_140036191.1\|694311_695808_+\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|273233
NZ_CP041040.1\|WP_140036196.1\|701923_702544_-\|DUF1349-domain-containing-protein	unknown	unknown	gnl\|CDD\|377771
NZ_CP041040.1\|WP_140036203.1\|708818_710030_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041040.1\|WP_140038614.1\|708048_708648_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041040.1\|WP_140036190.1\|693878_694196_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041040.1\|WP_140036193.1\|696609_699162_-\|ATP-dependent-helicase-HrpB	unknown	unknown	gnl\|CDD\|273901
NZ_CP041040.1\|WP_140036189.1\|692071_693802_+\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|235758
NZ_CP041040.1\|WP_140036186.1\|689918_690500_+\|asparagine-synthase	unknown	unknown	unknown
NZ_CP041040.1\|WP_140036197.1\|702704_703436_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213235
NZ_CP041040.1\|WP_140036200.1\|705587_706820_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|226951

Protein	Function_ID	Function_description	E-value
NZ_CP041040.1\|WP_140036189.1\|692071_693802_+\|FAD-binding-protein	gnl\|CDD\|235758	PRK06263, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	3.97489e-168
NZ_CP041040.1\|WP_140036200.1\|705587_706820_+\|histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	3.58458e-31
NZ_CP041040.1\|WP_140036201.1\|706816_707476_+\|response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.49488e-63
NZ_CP041040.1\|WP_140036199.1\|704292_705519_+\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	4.34661e-50
NZ_CP041040.1\|WP_140036194.1\|699352_700948_-\|flotillin-family-protein	gnl\|CDD\|225177	COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown].	2.98463e-51
NZ_CP041040.1\|WP_140036202.1\|707515_707956_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.64872e-08
NZ_CP041040.1\|WP_140036195.1\|701245_701674_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.12446e-12
NZ_CP041040.1\|WP_140036188.1\|691067_692000_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|183051	PRK11242, PRK11242, DNA-binding transcriptional regulator CynR; Provisional.	5.53384e-45
NZ_CP041040.1\|WP_140036185.1\|688951_689791_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223377	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only].	3.21799e-43
NZ_CP041040.1\|WP_140036191.1\|694311_695808_+\|L-serine-ammonia-lyase	gnl\|CDD\|273233	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form. This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein. [Energy metabolism, Amino acids and amines, Energy metabolism, Glycolysis/gluconeogenesis].	0
NZ_CP041040.1\|WP_140036196.1\|701923_702544_-\|DUF1349-domain-containing-protein	gnl\|CDD\|377771	pfam07081, DUF1349, Protein of unknown function (DUF1349). This family consists of several hypothetical bacterial proteins but contains one sequence from Saccharomyces cerevisiae. Members of this family are typically around 200 residues in length. The function of this family is unknown.	1.20746e-51
NZ_CP041040.1\|WP_140036193.1\|696609_699162_-\|ATP-dependent-helicase-HrpB	gnl\|CDD\|273901	TIGR01970, ATP-dependent_RNA_helicase_HrpB, ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP041040.1\|WP_140036192.1\|695860_696613_+\|AAA-family-ATPase	gnl\|CDD\|226425	COG3910, COG3910, Predicted ATPase [General function prediction only].	2.7733e-69
NZ_CP041040.1\|WP_140036197.1\|702704_703436_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213235	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter. The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.	9.77909e-87

>NZ_CP041040.1|WP_140036194.1|699352_700948_-|flotillin-family-protein
MEIAGIVGILIIVGIGIAIAIVVLLILLLFARSWIKVARADEALVISGRKQKVARAVIGADGSTKDEMSESPVTVIVNGKSLVNPITQRHEIISLRSRQVSLNAEAQSLDSVTLNVDGVAIVKIGSDPILVRRAAERFASQDKAIEQFTTEQLEGALRGIVATLSVVELMRERKKFSDQIAADVSQELAEQGLILDSFQIKGITDKVGYIQSLGAPEIQAKRQSAEISQTNADRAINQKNIANQEANLIEQTALDTNTANSNAGIGRARAEAEQAENLAREQAQQAVLQQQAENRQAQLDADVKRVADAQRYEAETRAQAELYTRERAAEAGAIEQVKQAEARTRIAEQQAEADKAKAAGEAAAAIARATGEADALRAQAEAESEARRLRANAEADAIRAEGEARAAAVEAEAKAIASNQDAFLSQRVLDVLPSIMAEFSKGYAAIGNVSIIGGSSDGGASDLVGADSAKALKSVFDSVSSATGLDLASIIQGQAVGRGIGEGVAAATAPAPRQSTPTTPPPPAPPAPAAE
>NZ_CP041040.1|WP_140036193.1|696609_699162_-|ATP-dependent-helicase-HrpB
MPPAAFDLAAIGAGLSFAAALDELSAALDASSSVVVSAPPGTGKTTLVPPLLASRSTGRVIVTQPRRVAARAAARRLAQLDGSPLGTRVGFTVRGERSTGPQTQVEFVTAGVLLRRMIDDPGLDGVDAVIIDEVHERALENDLLIGLLSEVRELRDDLVVVAMSATLDAARISAVLGTDDLPAPVVDHDVPAFPLVERWAPSPTPRLDERGVTWGFLHHVARTTSAAALDMVRENRDADVLVFAPGAREVSEIARRIRDASDAFDVRELHGQIPAAEQDAVIRGRSPDDRPRIIVTTSLAESSLTVPGVRLVVDSCLSRHPQRDATRGMTGLVTTAASRSSCVQRAGRATRQGPGTVIRCVDERSYAAAPARPAPEIAVTDLADAALLLACWGAPGGAGLRMIDPLPADNLADAVSVLRGLGAIDDEGRATAEGRALARVPADPRLARALRDGSPVVGSRLAAEVVAVLGGDLRIAEADVAQALIALRGGRAPDARRWRDDANRLERMVRQAPDARSGLDGVGLVIALAFPERIAHRVERTAEGATFLLASGTRAGVRGPLSAVEWLAVADVARASARAAAGSGAIIRSAAVLTEAQMERAANHLMTDRVEAEFTAGRVQARRERRVGAILRSSSPVRASAQEGRDAVRRAIRREGLGMFTWSDTAAALRRRLGLLRRELGAPWPDVSDAGLLEALDEWLAPELDALAGGTPAGRISLSSALRRLLPWPEAARLDELTPERLEVPSGSRIRIDYPDPDDATARPVVAVKLQECFGWAETPRLVDGRVPVLFHLLSPAGRPLAVTDDLASFWSGPYGQVRAEMRGRYPRHPWPEDPWAAVPTKHTKNRSAR
>NZ_CP041040.1|WP_140036192.1|695860_696613_+|AAA-family-ATPase
MDSIWRPGSRRRREQPIVAVRANSDAPAPGRLWPTTIPAVAQVLREGIDLAPGVTFLVGENGSGKSTIVEGIAVAYGLSPEGGSRQAKHSTRPTESPLSEWLQLQRGVGADRWGFFLRAETMHSFYTYLEENPSSSGDVPFHEMSHGESFLALLDSRFDSPGFYCLDEPEAALSFQSTLALIAVLQRIVDGGGQVLCATHSPVLAAFPGAQILEVGEWGIRPAEWNELELVNHWRSFLQDPPRYLRHLLD
>NZ_CP041040.1|WP_140036191.1|694311_695808_+|L-serine-ammonia-lyase
MTAYVSAFDLFSIGVGPSSSHTVGPMRAALEFAHRLRSTGAIDRVARIGCTLYGSLGATGIGHGTPDAVVAGLRGLAPETCDPADVRAAWTDLRDGATVRIDGSHEIPFSKTDIVFEPRTRLPGHPNAMTITAWDAAGGVVAEETYYSVGGGFIRRDGQDAKLASAPLPYSYADAASLLALCDEHGLSIAEVARLNETAERPEEEVAAGLDAIWDAMAACVDNGLHSDGVLPGMLKVKRRASAIRGQLEEAEADGHRELPGEWLGAFALAVNEENAAGGRVVTAPTNGAAGILPAVAMYWWRFLADSGLGVGNAVTPYGELVGSALLGFGAEASLVAVGAIDDPDAVAEANRRRGIRRFLLTATALGSLFKANASISGAEGGCQAEVGSACAMAAGGLTAVMGGTNRQIENAAEIAMEHHLGLTCDPIGGLVQIPCIERNAIAASTAVTAARLALRGDGSHYVSLDAVVETMRQTGIDMSTKYKETSEGGLAVNVIEC
>NZ_CP041040.1|WP_140036190.1|693878_694196_-|hypothetical-protein
MTNSTPEQDATSDLTPEAQTPTPTPSSGDVGEFKDTGSTAEKPAEADSPEDAGPSEVPSNDELEEPSTEKEPSEEPKAPTRNDPEPDHEAVGIGVIDGPETDEGD
>NZ_CP041040.1|WP_140036189.1|692071_693802_+|FAD-binding-protein
MSTRERQISTTVLVIGTGGSGLRAAIEVAEHGIDVLAVGKRPRQDAHTSLAAGGINAALGTMDEGDSWQQHAADTIKESYLLANPHTVEIVTQGAERGIRDLERWGMDFAREHDGRISQRFFGAHTFRRTAFAGDYTGLEIQRTLVAKAEQLEVPILDHVYITRLLVRDNVVFGAYGFDQSDGTRYLIHADAVILAAGGHNRIWRRTSSRRDENTGDSFRLAVDAGARLRDPELVQFHPSGIIEPENAAGTLISEAARGEGGILRNALGERFMSKYDPERMELSTRDRVALAAYTEIAEGRGTENGGVWLDVSHLPRETIMTRLPRVYQTMMELQMLDITTEPIEIAPTAHYSMGGVWVRPDDHQTDVDGLYAIGEASSGLHGANRLGGNSLIELLVYGRIVGQAAMAHAAGLDAQRRSADAVAQARAEIDDLLVADGRENVRALQRAIRNTMTQHAGVVRSEEGLRAGLAELDMIEGRMEDIGIHPDIAGFQDLAHAFDLKASALAARATLEAALERRETRGCHNRSDYPDTDPTLQVNLVWSPTGGVTHESIPEIPAEIAELMREVDTEGKLVE
>NZ_CP041040.1|WP_140036188.1|691067_692000_-|LysR-family-transcriptional-regulator
MNLEQLRGFVEVARLGHFTRASEHLHLAQPSLSRQISTLERELGAELFHRARGHIGLTAAGEALLPRAQRMLAESDAIREEMAELAGLRRGRVRLGAPPTLCISLVAEAISTFHAAHPGVDLHLTESGSRLLVDQLAVGAVDIALITESEGPPPSGFSLTRMPLLTEELVVVSAASEPPVSSSSSMTLHHLATLPLIALDETYELRATTDAAFRSAGLTPTVVLEGAEMDALLRFVERGVGVAVVPAMVLLDQPALRSVRISHPMMRRTVSLAHRADVTPAVAVAAMRHVIVGTAAEVARRDPAITSLLD
>NZ_CP041040.1|WP_140036187.1|690776_691061_+|hypothetical-protein
MTLPEQAQSNRAWHVVALVAGVLAIVSLFVVPSGIVGYLVAIAIASVAVMVGHLAVRRRGAFRAAAIVGLILAYLGLIAPVGLLVVRLTRMFAA
>NZ_CP041040.1|WP_140036186.1|689918_690500_+|asparagine-synthase
MGRTADAIAEGVAIATAAARLAVKNHILIGTIAENGVFDTDKYIADAREALRAMAEESEEVERNLTELRKRARGRHSDPSGTHDYRDRDVRNLRRRAKQSHGVATKLRDMMEDEAALRVIVEEAREGAWADVRHNLDRRLRVEGMRPDQDPDYERMREARMQALRLVDLQALSSLQRAKAKRKKKQNTPDGDE
>NZ_CP041040.1|WP_140036185.1|688951_689791_-|SDR-family-NAD(P)-dependent-oxidoreductase
MKRLTLTGSTTVITGAASGMGADIARLLARRRVHLALIDHNADGLAALAAELEGTTVTTHVVDLRDDDAVFAAAAEITAAHRRVNALITCAGSSMLGDIDQLTMEEMRWLTDVNLWGTVSITKALLPALRSAHAAHITHLASVYALAAPAGRIPYSLSKFAVRGFSEALRHELEGTSVTVGAVYPAGVRTGIILHGRYAAAIDPAVAARAAGAQAAMYHTEPADAAAQIVRATERRRARSMIGREARLIDVLARLAPTGYWRVMRRPLREAIDTTTPIA
>NZ_CP041040.1|WP_140036195.1|701245_701674_-|MarR-family-transcriptional-regulator
MTDRKLALEAWESLFRAQHELFTEMNTDFDHTELGQAEYDVLLTVTRSPGMSARLRDVTANMLISQPSVSRLVDRMVARGLVAKCPDPDDGRGALIRATDAGVREFRSVATVHGRSIAERMSRLDDAELKTLRDLAEKLRGR
>NZ_CP041040.1|WP_140036196.1|701923_702544_-|DUF1349-domain-containing-protein
MNTRVDLPGVPFPLHPSEDWPWRVEADSVLVTAKPHSDFFVDPSGSGSVAAESQLNAVSLTGRPAEGDFTLTARVHVDFTDTFDAGVLIVWADETLWAKLCFEFSPDRKPMVVSVVTRGVSDDANAFLVEGDEVWLRIARIGTVYAFHASVDGTRWDFVRGFALGAEEQQVTVGLEAQSPMGNGCDVRFDAVTYTAATLGDLRDGS
>NZ_CP041040.1|WP_140036197.1|702704_703436_+|ATP-binding-cassette-domain-containing-protein
MNISTSPPLQARGLHKSFHGRARVDGVGFTIESGRVVGLLGPNGAGKTTTIRLLLGLIAADQGEALVFGRRYRDLERPATMVGAVLDAGGLHPARTGREHLRIAAARADVAIERVDVVLAEVGMTSDADRRSGGYSLGMKQRIAIAAALLGEPKLLVLDEPSNGLDPAGMRWLRDRLRAFADAGGTVLLSSHLLSDVQDIADDIVVIADGRVVADVTLADAVATASGDLEGYYLQVTGIAGVR
>NZ_CP041040.1|WP_140036198.1|703435_704260_+|hypothetical-protein
MFRAELLGLTTTTATKVSALVAIVGLILTQLMFVTVLPALARGDIGPGAAALGADLPVLDLTSATAQLDAINPLGASMGGGSIGIALLAVVLLGTLAGTSDDRYGGMVGAALASPRRGRIVAGKATAVTVVGVVIGAVMAVVSLIALLIALAMTGTPFIVGAGDVAATLGRGVVAVAGLALIGLAVGILVRTQLAGILTMLAVLFAEPLLTAMTSLIGGGSAPVWTQFLPVALAQNVIHGGSADVHVGVALAALAALTAAALAAASVALSRRDL
>NZ_CP041040.1|WP_140036199.1|704292_705519_+|serine-hydrolase
MNGSPTPQNQPAPRRRMRTVIAIAAAALLVAGAITAGALFRASDRPASSADAATTGDLETRLQSLVDAGYPAALASVTSPDGEVENAVAGEGDIETGQAPPLDAEVRIASNTKMFVATIVLQLVDEGLVDLDAPIDTYLPGLIRGAGIDGAGITVLQLLQQTTGLPEYADQIAADAFGAQKRYISPRDMLDIALSRPASFAPGEKWEYSNTNYLVLGLLIEAVTDRAIAQQIEERIVTPLALEHTYFPAPGELPLRGEHPTGYHADVPGELRDISTMDTSFAWSAGAMVSTPAELNTFMRALLNGELLSGAALETMKTSVPAGDELWPEAEYGLGLQRYPLSCGGFAWGHGGDIPGTQTRNAVAPDGTAATIAVTALPWAVVSPDDEEVLLEQYRIVVEALDETLCDR
>NZ_CP041040.1|WP_140036200.1|705587_706820_+|histidine-kinase
MTPAEPPSRAERVRRAIPPALVLAAAIGYLGADLWIDELPATVPGDVSPLVHAALVALQAVLLVFRRRAPIIVFAGAVLLDAVILATSAGELGVGSLGVILAAYAMARRSPRNPALTALALGALVTTGVGASALLLGSRESALVLILTVIARVVLQYAAPAAVAEYVRGRERLADALQEQARMAEHERRERAEREVRAEREALARELHDIAGHHLSGIVVSAQAATALTRSDLDRAREMMQTVQDDARIALADLRRTVGLLRSDDDTPSGAPSPVPTIAGIGALVDAARERGQRVALTTAGDARPVGALAETTAYRMVQESLANAARHAPGAACAVTVRFGADAVQITVANEPSAEGRTRETTERSGVGYGLSGMAERAELIGAHLSAGPDDGGGWTNRLDIPFDGRSAP
>NZ_CP041040.1|WP_140036201.1|706816_707476_+|response-regulator
MIRVLIADDQAVVRAGLAVILGAEADIEVIGEAVDGADAVRLARSLRPDVVCMDIRMPGSDGIAATREIVGDAALATDVLILTTFDVDADVFAALEAGAAGFLLKGADEHTLLGAVRSVAAGDGTLDQRLTRRILHEFGERRRASTAQMPAEGPPLTERELDVLRLLAEGLSNAEIADRLFVELTTVKYHLAGILQKTGARDRLQAVLWGIRAGIVEAG
>NZ_CP041040.1|WP_140036202.1|707515_707956_-|GNAT-family-N-acetyltransferase
MTDATTILDRVATAAEHRSIAESVGWHDAFDWATIADSLAGSTFGVVAYAGDEPVGMGRVVGDGVKYFYVQDLAVIPAFQGTGLGARMLDRLAERIAEVAPATAFVGLFSTAEGAGLYASRDFSSGDMTGLFRLIEPTSRDANQNG
>NZ_CP041040.1|WP_140038614.1|708048_708648_-|hypothetical-protein
MSITVDDSPHILMELLWLREAYELQPEGDDLPPLLVDTPVAVPDPAVRAATRDEWGATWPRIWHAALAHAGRDQDPRLFDELRTTADGSPERAELLHRIVGPSWRDEFGDTAFDHGSFATWSQKGAEAHLAAMPARLEDQPERRDLPALIPAWRAGLTKIVTIPCAGEFTHRVGENALLTTSATRENSDSYRRALGTFA
>NZ_CP041040.1|WP_140036203.1|708818_710030_-|hypothetical-protein
MRTSPLRRALISAAALGAVVTLASCAAGGSTAPASTPDGSGSDSQPGPRVAVAYEGGILVLDGETLDTVADFESEPFTRLNPAGDDRHVMVTMSEGFQVLDTAAGSTDEPELTDTIFEADTPGHVVRHADKTVLYADGTSDTTIFDTADLASADGLPDVETIPGVEAHHGVSVVLEDGTFLTTVGNADGRNGIVAKDAEGAEIASSDQCPGVHGEGTAKDEAVVFGCENGAIIYHDGEITKVDAPDQPYGRMGNAYVSETSPIIVGDYKNDIDAEGYLLSAVTLIDTEAKTLEVVDLPEGVEYTFRDVVRGPEDLAYILSSDGSIHVLDPESGEITDSFPVVEAWEGPAEWQDAHPAIVVAGNIAYVTEPAANSVHAVDLTTGEVLASTELEVTPNEIAPAAG

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Crispr_ID: NZ_CP041040_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041040_2

1476521-1476603

Orphan

Consensus_repeat	Method
TCGGCGCAGGGCATGGGCCAGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041040_2

>merge|NZ_CP041040|2|1476521-1476603|CRISPRCasFinder
TCGGCGCAGGGCATGGGCCAGCGTCCGGCAGGTCCGCGTCCCGGCAACAACCCGTTCGCCTCGGCGCAGGGCATGGGCCAGCG

>NZ_CP041040|2|2|1476521-1476603|CRISPRCasFinder
TCGGCGCAGGGCATGGGCCAGCG	TCCGGCAGGTCCGCGTCCCGGCAACAACCCGTTCGCC
TCGGCGCAGGGCATGGGCCAGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041040.1\|WP_140036811.1\|1472113_1473154_+\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|224527
NZ_CP041040.1\|WP_140036812.1\|1474608_1475592_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061
NZ_CP041040.1\|WP_140036821.1\|1484368_1485322_+\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_CP041040.1\|WP_140036818.1\|1482612_1483506_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235113
NZ_CP041040.1\|WP_140036810.1\|1471485_1471989_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|379804
NZ_CP041040.1\|WP_140038675.1\|1473122_1474478_-\|NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|177909
NZ_CP041040.1\|WP_140036807.1\|1467298_1468591_-\|DUF222-domain-containing-protein	unknown	unknown	gnl\|CDD\|367155
NZ_CP041040.1\|WP_140036808.1\|1468841_1469612_+\|isocitrate-lyase/phosphoenolpyruvate-mutase-family-protein	unknown	unknown	gnl\|CDD\|379346
NZ_CP041040.1\|WP_140036819.1\|1483502_1483871_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041040.1\|WP_140036809.1\|1469654_1471412_+\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236405
NZ_CP041040.1\|WP_140036815.1\|1478898_1479333_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP041040.1\|WP_140036806.1\|1465806_1467222_-\|RNB-domain-containing-ribonuclease	unknown	unknown	gnl\|CDD\|223631
NZ_CP041040.1\|WP_140036817.1\|1481605_1482505_-\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
NZ_CP041040.1\|WP_140036816.1\|1479397_1481596_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_CP041040.1\|WP_140036820.1\|1483913_1484372_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041040.1\|WP_042541814.1\|1487898_1488927_+\|ATP-dependent-6-phosphofructokinase	unknown	unknown	gnl\|CDD\|274155
NZ_CP041040.1\|WP_140036823.1\|1488997_1491097_-\|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl\|CDD\|224684
NZ_CP041040.1\|WP_140036822.1\|1485531_1487676_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|350677
NZ_CP041040.1\|WP_140038674.1\|1464879_1465302_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240021
NZ_CP041040.1\|WP_140036813.1\|1475651_1475906_+\|DUF448-domain-containing-protein	unknown	unknown	gnl\|CDD\|377288

Protein	Function_ID	Function_description	E-value
NZ_CP041040.1\|WP_140036811.1\|1472113_1473154_+\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	2.68135e-42
NZ_CP041040.1\|WP_140036812.1\|1474608_1475592_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	3.95208e-164
NZ_CP041040.1\|WP_140036821.1\|1484368_1485322_+\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	7.32502e-118
NZ_CP041040.1\|WP_140036818.1\|1482612_1483506_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235113	PRK03287, truB, tRNA pseudouridine synthase B; Provisional.	3.00495e-131
NZ_CP041040.1\|WP_140036810.1\|1471485_1471989_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|379804	pfam16242, Pyrid_ox_like, Pyridoxamine 5'-phosphate oxidase like. This domain, approximately 140 residues in length, is mainly found in general stress proteins in various Xanthomonas species. It is composed of a six-stranded antiparallel beta-barrel flanked by five alpha-helices and can bind to FMN and FAD, suggesting that it may help the bacteria to react against the oxidative stress induced by the defense mechanisms of the plant.	2.84907e-54
NZ_CP041040.1\|WP_140038675.1\|1473122_1474478_-\|NAD(P)-binding-protein	gnl\|CDD\|177909	PLN02268, PLN02268, probable polyamine oxidase.	1.81736e-81
NZ_CP041040.1\|WP_140036807.1\|1467298_1468591_-\|DUF222-domain-containing-protein	gnl\|CDD\|367155	pfam02720, DUF222, Domain of unknown function (DUF222). This family is often found associated to the N-terminus of the HNH endonuclease domain pfam01844. The function of this domain is uncertain. This family has been called the 13E12 repeat family.	4.392e-17
NZ_CP041040.1\|WP_140036808.1\|1468841_1469612_+\|isocitrate-lyase/phosphoenolpyruvate-mutase-family-protein	gnl\|CDD\|379346	pfam13714, PEP_mutase, Phosphoenolpyruvate phosphomutase. This domain includes the enzyme Phosphoenolpyruvate phosphomutase (EC:5.4.2.9). This protein has been characterized as catalyzing the formation of a carbon-phosphorus bond by converting phosphoenolpyruvate (PEP) to phosphonopyruvate (P-Pyr). This enzyme has a TIM barrel fold.	2.23361e-60
NZ_CP041040.1\|WP_140036809.1\|1469654_1471412_+\|proline--tRNA-ligase	gnl\|CDD\|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0
NZ_CP041040.1\|WP_140036815.1\|1478898_1479333_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	1.91098e-45
NZ_CP041040.1\|WP_140036806.1\|1465806_1467222_-\|RNB-domain-containing-ribonuclease	gnl\|CDD\|223631	COG0557, VacB, Exoribonuclease R [Transcription].	4.58696e-64
NZ_CP041040.1\|WP_140036817.1\|1481605_1482505_-\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	1.38545e-83
NZ_CP041040.1\|WP_140036816.1\|1479397_1481596_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	2.61065e-16
NZ_CP041040.1\|WP_042541814.1\|1487898_1488927_+\|ATP-dependent-6-phosphofructokinase	gnl\|CDD\|274155	TIGR02483, ATP-dependent_6-phosphofructokinase_1, phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal. [Energy metabolism, Glycolysis/gluconeogenesis].	1.4502e-159
NZ_CP041040.1\|WP_140036823.1\|1488997_1491097_-\|prolyl-oligopeptidase-family-serine-peptidase	gnl\|CDD\|224684	COG1770, PtrB, Protease II [Amino acid transport and metabolism].	0
NZ_CP041040.1\|WP_140036822.1\|1485531_1487676_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|350677	cd17919, DEXHc_Snf, DEXH/Q-box helicase domain of DEAD-like helicase Snf family proteins. Sucrose Non-Fermenting (SNF) proteins DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	5.52171e-45
NZ_CP041040.1\|WP_140038674.1\|1464879_1465302_-\|NUDIX-domain-containing-protein	gnl\|CDD\|240021	cd04663, Nudix_Hydrolase_6, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	5.82104e-09
NZ_CP041040.1\|WP_140036813.1\|1475651_1475906_+\|DUF448-domain-containing-protein	gnl\|CDD\|377288	pfam04296, DUF448, Protein of unknown function (DUF448).	1.93796e-22

>NZ_CP041040.1|WP_140036813.1|1475651_1475906_+|DUF448-domain-containing-protein
MEPVRTCVGCRTRAPRTALLRVVAQNDTLIIDERSVLPGRGAWVHPTPECMDAALRRRAFGRALRASGNLDTRIIEQYPPRNKG
>NZ_CP041040.1|WP_140036812.1|1474608_1475592_+|transcription-termination/antitermination-protein-NusA
MDIELSLLRGIEKEKAIPFDELVSIIEQAILTAYSKHVSADGATPEGVRVDLDRRTGHVAVLQVVKDEEGAIIGEEDATPDDFGRIAAFAAKQVISQRLRDIADDVVLGDFKDKEGDIVAGVIQQGPNPRMIHVDLGAVEAILPPEEQVPGEEYTHGSRLRVYVTSVAKGLKGPQITVSRTHPGLVRKLFALEVPEIAAGLVEIVSLAREAGHRTKIAVRANDPAINAKGACIGEMGRRVRAVTEELSGEKIDIVDHDPELAAFVANALSPAKVTSAFILDANTRAVRALVPDYQLSLAIGKEGQNARLAAKLTGAKIDIQPDSVLD
>NZ_CP041040.1|WP_140038675.1|1473122_1474478_-|NAD(P)-binding-protein
MTTYDTIVIGAGMSGVTAARMLADAGADVIVLEARDRVGGRMHTDRTAGFPVDLGASWVHGIERSALWDLVQALGIPTLEYTVGSFQAGGRPIENFDGDGRPMDAALTSQWVSDVEEADRLLVDEIERSSPGDTYLDVTERALDRTGFDPERIDEIREFFRHRVEEQCGAWIGDLDAHGLDEDAIDGDEVIFPRGYDELPRRIAAELDIRLGHVVTRIARTDAGVTVSTENGEFSARSAVVTVPLGVLKSGSIDFAPPLPDTVAEPIERLGMGVFNKVFIQFPERFWNEDSYVLRALGEAGEHWHSWYDVSAVSGLPTLLTFAAGPFGRRMQELSDDEIVADAVGALRALYPEAVGEPTAHWVTRWGHDAFSNGSYSHLALGSSHHDHDDLAGPVDGVLHFAGEATWGDEPATVGAAFYSGHRAAERILGHSIDLAAFARGITARERTPTS
>NZ_CP041040.1|WP_140036811.1|1472113_1473154_+|TIGR00730-family-Rossman-fold-protein
MTDEPLPESLSAEINNVLDEAGVKTDRRLVMRMMRTAVLLGEDGTTRLDLKIASAALAEMRDAFRLFAPFEGVPKVTVFGSARTRHDDPLYVQARDVAAALAADGWMVVTGAGPGIMQAAAEGAGPALSLGVSIRLPFEEKANSLIAASEHVVAMKYFFTRKLMLIKESSGFICLPGGFGTLDEMFELLTLQQTGKAEPTPIVLLDEPGGTFWNGLKRFIDEDLEPTGVISDGDFDRVVITDSVESAAAVIAGFWRNYDSLRWVGDSLVLRLRVAPTDAELEELNDRFAGMLSSGRIERTAPRSPEVADDDLLHLPRLALHLDQRQVGSLFRLIGAINSLESAPAL
>NZ_CP041040.1|WP_140036810.1|1471485_1471989_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MTEITGPEALARVTELVEDIDFTMLTTTDEDGNLVSRPMSTRQMDDAGDIWFFTAEDTEKVEEARAHHQVGLSYCDAKGMRYVSVAGNASVVHDRAKMEELYSPSLDIWFENGLDTPGIALLKVSPTVTEFWEPAKGKIAMAAGALKALVTKDTPDDDIMNHGRIVR
>NZ_CP041040.1|WP_140036809.1|1469654_1471412_+|proline--tRNA-ligase
MVTRLSNFFLRTLREDPAGAEVASHRLLIRAGYIRPQAAGIFAWLPLGLRVKAKIETVVREEMAAAGAQEVHFPALMPRESYEATGRWEEYGDLLFRLQDRKGGDYLLAPTHEEAFTLLVKDLYSSYKDLPLTIYQIQDKYRDEARPRAGLLRGREFTMKDAYSFDSSDAGLDVSYQAQRDAYERIFQRLGLEYVIVQADAGAMGGSRSEEFLHPTPVGEDTFVRSAGGYAANVEAFATAVPDAIAFDADASPVIFDSPNTPTIETLVAHANEHLEGDYSAADTLKNVVLALTHLDGTRELVVVGIPGDREVDEKRAEVAFAPAEVETATADDFENNPLLVKGYIGPWSPTGAVLGEESATGIRYLVDPRVSEGTSWITGANVDQKHAHSVVAGRDFFSDGIIEIANVRAGDPAPDGSGPVELARGMEIGHVFQLGRKYAEALGLKVLNENGKLVTVTMGSYGIGVTRILAIIAELNNDDKGLIWPASVAPFDVQVLAAGRDQVAFDVATELSTQLESAGLDVLYDDRPKVSPGVKFGDAELVGVPKIVIVGRGAAEGQVELWDRSTGDREAVSVAEAVQQLSRR
>NZ_CP041040.1|WP_140036808.1|1468841_1469612_+|isocitrate-lyase/phosphoenolpyruvate-mutase-family-protein
MTTAAKAKALIGLYEAPEILRVVNVWDVVSARAVAKLPETKAIATAGHGIAASFGFEDGTIPRDIMIDMIGRIAASVSVPVTADLDDGYGDAGETTRLAIGAGVVGANVEDRLKPFDESVAAVEAIVKAAEAEGVPFALNARTDAFVRAGHRPVAESVADAIQRGRAFLDAGATAVFVPGMLDANITRQLVDGLGAGKLSVIGLPGTLAASEYEKLGVTRISYGPLPQRVALTAVQELAASLYAGGVIPNGLPALN
>NZ_CP041040.1|WP_140036807.1|1467298_1468591_-|DUF222-domain-containing-protein
MTALIDATVEQMGALGAVAEMLVEVDRTIGSLLAARDGLLALGSRIAVEAAEQAAEPSADGVDLAVRAVAAEFGAALRVSDRTVQRRMLDAELVVSRFPRVWQAQGAGLISAAHARVIVDAGMHLEDPGARSAYAGQMVDFAQTESPNRVGRMARRVADRFQPRSIDERHKDARRERGVWVKNRADGMAELSIFGPAALVHGALNRVTAIVKAAFAESSSDSRTPSAHDSRTLGQARCDVALDLLLTGAPAGHDTVDGMLAAITPTVTVTVPVLSLIGASSVPAELDGCIPIDIRTARLLAGMASGWDRILTHPITGALLAVDHYRPSVALKRHLRARDQRCRFPTCGYSARDGDLDHTRDHALGGATTADNLGVLCRRHHTLKHRTPWHVEHRNDGAFAWTSPTGQIYIDKPPAQNTTTVTEDDAPPPF
>NZ_CP041040.1|WP_140036806.1|1465806_1467222_-|RNB-domain-containing-ribonuclease
MPQRRSHVAPSAAQTELAAALAALRESLDAPTDFPTSVVAEAEASEAAVPELDLRDIPFATLDPQGSRDLDQAFHLERRDSGYTVRYAIADVPGFVAPGGAVDAEARRRGQTLYAADGRIPLHPKVLSEDRASLLADADRPGLVWTFALDSAGVVEEFRLERALIRSRAQLEYASTQAALDRGEGGPAALLPEIGALRIEQEKIRGGASLNLPDVEVTRAADGTYAIERRHPLPVEEWNAQLSLMTGMAAASLMIGAGIGILRTMPQPDEKSFEAFRHQTEALGRPWTTGTYGDYLRELDREDPMTLPILEAAASLFRGAGYVAFDGSVPPDVEQAAIAAPYAHATAPLRRLIDRWSLAICLAVSEGREVPSWVRESLPDLPALMQESGQRASRLDSATINCVEAALMTPLVGSAVDATVIEIRGERAAVQIAEPAVTASAPIPADTVPGAVVRLRVVRADIARGEIEFSA
>NZ_CP041040.1|WP_140038674.1|1464879_1465302_-|NUDIX-domain-containing-protein
MVEKAVCYVIAENRLLVFTHDDTDMLATGVQVPAGTVRQGESAAGAAERELFEETGLRGTVTRRLGTDLYDLSPAREEMALRHFFQLEIPDPDVTAVWQAGEADPATGDSPISWTCRWLPLSQAHVLAAGLGARLGAATR
>NZ_CP041040.1|WP_140036815.1|1478898_1479333_+|30S-ribosome-binding-factor-RbfA
MAGERQARLADRIRVILAERLEKGLRDPRLGFVTITDVRVTGDLQHASVFYTVLGTEEERLSSGEALTSATGMLRSEVGKQLSTRLVPTLEFIPDALPENADHISALLREAQQRDADVAKLASSASHAGEADPYLRQEDDDTKS
>NZ_CP041040.1|WP_140036816.1|1479397_1481596_+|helix-turn-helix-transcriptional-regulator
MGTGGFGIFLSRAHGATSIAPAVVEKILDDLLEHDLSCAPHVAARLAVELSGDPQTILAVAARLDADQRRGLRALPSPLPMVPSVEALFAQLELDDRDRAVLVAVSLRLDDRLDPLVDFAGRSAAELAGGPLGSLLDIHAGRVRLADPRLAIWLRATTTSSMAAAVHSRLHRLFDARGERVDADWHGARAAVHGEPVTAGELTRIAREHSEAGLSERAFHLAAEAAAHSSGIERDEATLVAGVAAIAAGYAVEAACRLGSLFPDGDELYRLQGLGGLLVAEAHLRGSVPEVDTSVVQPRIDDDAHWYSWARASAFAAMLCAERGDRRGMRSWLEALRRASGRVDADSELRDPVVALAWLVIGDGETDDVRGTGPLSGSMLLALRAAVEGDVDRALRLLAAGDSAIGVEVDPFVAGFELSPLVAAYRGIVEVLLLMWRGDIGAARDRMLSAALELPVAVPFAGLGVVIARRLDLAVLGHLGPFAKALTAALPAPSRIDQLVDRGIEAFLAGNSAEAASCMRLWRDRGAPQPTLSVPGLEEAIVVTHGASWRPHRIEPPEIALAQRLRVQITSCSDDEWRVERPLVVAAARTLTSPFSRGRVEAMIGTRSLIKGDIAIGREHLSMARNLLEVSGATAWARAIAARLDRVEVADGAAVAGDPLSSCRRVWESMLTARELEVAMLAVGGASNRDIADSLHVSVRTVEVHLGRVFAKLEVRTRVELTVLAHRIGQFV
>NZ_CP041040.1|WP_140036817.1|1481605_1482505_-|A/G-specific-adenine-glycosylase
MPSTSPATAEVSLPLVHWYRDAARDLPWRRPRFHEDFGAWGTLVSEFMLQQTPVNRVIPHLEAWLDRWPTPPAMAAASTSEVLQQWANLGYPRRALWLHRAAVEITERHGGIVPNDVDALLKLSGIGDYTARAVAVFAYGDRHPVVDTNTRRVMARAILGQAQPGPPSRRDLELMDSLLPADVVESAVFNAAAMELGATVCTARSPRCDICPLVDVCAWVAAGRPDTGDTRRRQAAFEGSDRQARGAVLRILRAAAPVPVLIDSVLAEWPDPLQRDRAIDSLIVDGLAEADGEMLSLPR
>NZ_CP041040.1|WP_140036818.1|1482612_1483506_+|tRNA-pseudouridine(55)-synthase-TruB
MVSPGILLVDKPAGLTSHDVVARTRRALGTRKVGHAGTLDPMATGLLVIGVEGATRLLTYIVGADKTYEATIRLGQTTDTDDADGEILTHASAESWDPVTPERVSAEIGALTGAISQVPSSVSAIKVDGRRAYDRVRAGEEVVLAARDVTVSRFDVVAERSGAGFLDLDVVVDCSSGTYIRSLARDLGAGLGVGGHLTALRRSRVGDFDVADAVTVDDVVEEALLTPAAAAARVLDPLSVSTEEARDLRHGKRLTGQADRLTGAQAAAIDPNGIFVGVVERRGADLKSAMNMPEAAG
>NZ_CP041040.1|WP_140036819.1|1483502_1483871_+|hypothetical-protein
MILWLTIAQVAVATMVGVFCVSLGLAGRRPSDYTVGALALVELLLVVQVVVAIVAPLAGNPPTGDLLEYWVYLVSAVLLPVGAVLWALMERSRWSTVILGVAALAVAIMVWRMHVIWTIQVA
>NZ_CP041040.1|WP_140036820.1|1483913_1484372_+|hypothetical-protein
MEDAMSTSVPTSRMSGIGRVLVIVYAVMALAATGRSFVQIFRQFDEAPLAYSLSALAAVVYILATLALVLASRRGWYAVAWVAIVFELAGVLAVGALSIFFPELFPHDTVWSMFGRGYLFIPLVLPVFGIWWLRTHGPIREAQPALHAEANA
>NZ_CP041040.1|WP_140036821.1|1484368_1485322_+|bifunctional-riboflavin-kinase/FAD-synthetase
MIVFRDPSDVPDGFGPSAVAIGKFDGVHAGHRAVIRRLKEIAAQSGVRAVAVTFDRNPLAVLRPDRCPENVVTVERKLELLGELELDATLLLTFDEELAARSAEDFVASILTGALHVSTVLVGRDFRFGRGGAGDPELLRELGPRYGFTVEVVDDVFLDGSGRRVSSTWIRELLMAGDVTAAARVLDRNVDVRGEVVHGLKRGRELGFPTANLSASVDSFVPADGVYAGWLVDHETGLRHRAAISVGTNPTFDDVLERQVEAHVIGETDLDLYGHDVTVEFVERLRGMVAFEGIEKLKAQMATDVTDAASVLSRRSS
>NZ_CP041040.1|WP_140036822.1|1485531_1487676_+|DEAD/DEAH-box-helicase
MPTTATAATRRKKTSRRDDEAPLIPILARKVREIEAKSQRGKLGPTNRVKFQVIAFLVREERARVKADPEIADAARAELLKRLDGVATILAKTAARDTSLIQLLEADQATSPVAKRMRRDWLLESGAELAPEELIIADVAPVQTPVVSAGIAERQVTPPSVEARQLANPFLAPDLTPRATTTPRRRLDGWELMGPLYKAFETGAGGGAASMDLPPAPEYDHLSPKGLEVMVHQSRFLEAVREGHRSFLLADEPGLGKTAQSVLAASVAGAYPLLVVVPNVVKMNWAREVERWTPQRRATVIQGDGADIDAFADVFIVNYEILDRHMSWLASIGLRGMVVDEAHFIKNLSSQRSQNVLSLANRVRERTPGGKPLMLALTGTPLINDVEDFDAIWRFLGWTTGEKPGPELMEKLDATGFTPADKAFYPEAREAVISMGIVRRKKKDVAADLPDKLIADLPVQLDDEFGRGIRQAERELGERLAARYRRIIEARGDRGLAPGEIDQDIVRLVAQNELEESKAAGTGGDNVFTMVRRIGQAKAHLAADYAAQLQRSVGKVVFFAKHIDVMDQAEAHFAAAGIRSVSIRGDQTSTVRQQAIDDFNGDPAVGIAVCSLTAAGVGLNLQAASNVVLAELSWTAAEQTQAIDRVHRIGQDEPVTAWRIIAAHTIDAKIAELIDQKQGLAARALDGEALDEAAAEPVQLGALMHLLREALGAA
>NZ_CP041040.1|WP_042541814.1|1487898_1488927_+|ATP-dependent-6-phosphofructokinase
MKIGILTSGGDCPGLNAVIRGIVLKGTTTYDLEFVGIRDGWRGVVDGDFFPLTRHEVKGLSKVGGTILGTSRTNPYEGERGGAENIAKTLYGHKIDGIIAIGGEGTLAAADRLAKDGINVIGVPKTIDNDLRATDYSFGFDTAVNIATDAMDRLRTTGDSHQRCMVAEVMGRHVGWIALHAGMAAGAHAICIPEVPMSIDDITALVSSAHDRGRAPLVVVSEGFKLLGMDEAYSDKGLDAFNRPRLGGIGDQLAPAIERITGIETRATILGHIQRGGSPSAFDRVLATRLGLHAADAIVEKAWGQMVAMQGTDIVRVPFAEALGELNTVPRSRYDEAAALFG
>NZ_CP041040.1|WP_140036823.1|1488997_1491097_-|prolyl-oligopeptidase-family-serine-peptidase
MTEAPIADRRSTLRTHHGDTFDDPYEWLREKDSREVIAHLEAENAHTEDVLSHLANLRETLFQEIKGRVQETDLSVPTRRGNWWYYSRTEEGAQYGIHCRTAAAEHDWTPPVLEPGVAVPGETVLLDGNIEAEGHEFFSLGAFDTSDDATKLLWATDFEGDELYTVHVRDLVTGETLPDEIPDTGGAFFTPDGTGILYTTRDDAWRPDTLWLHRLGTPVTDDVKLFHEPDEKYWLGAGITRSRKYLVIAVGSSITSEEYLVDLAGDLTVAPRVVWPRREGVEYSLEHAVVDGEDRLYILHNDDALDFELVSVSASDPQGDRRVVLAHEPGRRLLGMDAFRDFATVEYRREGLERVGLLDYGTDAVDDIVFDEPLYSAGVSGNPEWHSPFLRLGYTSFVTPGTVYELDLATRELHLRKQVTVLGGYDPLDYGQKREWATASDGTRVPISLVWKRSFGEPGSEVRPVHLYGYGSYEHSIDPGFSVARLSELDRGIVFAVAHVRGGGEMGRQWYEDGKLLNKRNTFTDFVACAEHLIEQGVTSPDRLVAEGGSAGGLLMGAVTNLAPELFAGVLAAVPFVDALTTILDPSLPLTVIEWDEWGDPLHGADVYEYMKSYSPYENVRDGVDYPRILAVTSLNDTRVLYVEPAKWIAALRVAGATDALLKCEMVAGHGGVSGRYNSWKERAFELAWIFDTVGLASE

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Crispr_ID: NZ_CP041040_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041040_3

2300067-2300178

Orphan

Consensus_repeat	Method
TCATCGGATGGTCCCTTCGTTGAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041040_3

>merge|NZ_CP041040|3|2300067-2300178|CRISPRCasFinder
TCATCGGATGGTCCCTTCGTTGAAACTGAATCTGTGCATCGAGTCCGCGCGACCGGACGTCATCGGACGAGCGAGTTCAACCGAGGTCATCGGATGGTCCCTTCGTCGAAAC

>NZ_CP041040|3|3|2300067-2300178|CRISPRCasFinder
TCATCGGATGGTCCCTTCGTTGAAAC	TGAATCTGTGCATCGAGTCCGCGCGACCGGACGTCATCGGACGAGCGAGTTCAACCGAGG
TCATCGGATGGTCCCTTCGTCGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041040.1\|WP_140038743.1\|2310520_2311609_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380149
NZ_CP041040.1\|WP_140037485.1\|2304137_2305835_-\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
NZ_CP041040.1\|WP_140037481.1\|2298139_2299285_-\|prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|235824
NZ_CP041040.1\|WP_140037473.1\|2291572_2291770_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181104
NZ_CP041040.1\|WP_140037477.1\|2293381_2294839_+\|DUF222-domain-containing-protein	unknown	unknown	gnl\|CDD\|238038
NZ_CP041040.1\|WP_140037479.1\|2295959_2297480_-\|ribosome-biogenesis-GTPase-Der	unknown	unknown	gnl\|CDD\|179525
NZ_CP041040.1\|WP_140037488.1\|2309483_2310521_-\|HAD-IIA-family-hydrolase	unknown	unknown	gnl\|CDD\|319832
NZ_CP041040.1\|WP_140037474.1\|2291791_2292247_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041040.1\|WP_140038742.1\|2305852_2307544_-\|DNA-repair-protein-RecN	unknown	unknown	gnl\|CDD\|223571
NZ_CP041040.1\|WP_140038739.1\|2300756_2301620_-\|segregation/condensation-protein-A	unknown	unknown	gnl\|CDD\|224273
NZ_CP041040.1\|WP_140037483.1\|2302639_2303542_-\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|234713
NZ_CP041040.1\|WP_140037480.1\|2297472_2298147_-\|(d)CMP-kinase	unknown	unknown	gnl\|CDD\|236546
NZ_CP041040.1\|WP_140037475.1\|2292287_2292956_+\|lysoplasmalogenase	unknown	unknown	gnl\|CDD\|377946
NZ_CP041040.1\|WP_140037472.1\|2290991_2291576_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP041040.1\|WP_140038740.1\|2301645_2302479_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379293
NZ_CP041040.1\|WP_140037486.1\|2307540_2308455_-\|NAD-kinase	unknown	unknown	gnl\|CDD\|235121
NZ_CP041040.1\|WP_140037478.1\|2294932_2295871_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240033
NZ_CP041040.1\|WP_140037476.1\|2292955_2293342_+\|RNA-binding-S4-domain-containing-protein	unknown	unknown	gnl\|CDD\|224109
NZ_CP041040.1\|WP_140037487.1\|2308451_2309249_-\|TlyA-family-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|224110
NZ_CP041040.1\|WP_140037484.1\|2303544_2304123_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|239516

Protein	Function_ID	Function_description	E-value
NZ_CP041040.1\|WP_140038743.1\|2310520_2311609_-\|hypothetical-protein	gnl\|CDD\|380149	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD. Features of this protein family include a YSIRK-type signal peptide at the N-terminus and a variable-length C-terminal region of Ser-Asp (SD) repeats followed by an LPXTG motif for surface immobilization by sortase.	1.79779e-19
NZ_CP041040.1\|WP_140037485.1\|2304137_2305835_-\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP041040.1\|WP_140037481.1\|2298139_2299285_-\|prephenate-dehydrogenase	gnl\|CDD\|235824	PRK06545, PRK06545, prephenate dehydrogenase; Validated.	4.5125e-118
NZ_CP041040.1\|WP_140037473.1\|2291572_2291770_+\|hypothetical-protein	gnl\|CDD\|181104	PRK07758, PRK07758, hypothetical protein; Provisional.	2.67483e-05
NZ_CP041040.1\|WP_140037477.1\|2293381_2294839_+\|DUF222-domain-containing-protein	gnl\|CDD\|238038	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.	1.32426e-08
NZ_CP041040.1\|WP_140037479.1\|2295959_2297480_-\|ribosome-biogenesis-GTPase-Der	gnl\|CDD\|179525	PRK03003, PRK03003, GTP-binding protein Der; Reviewed.	0
NZ_CP041040.1\|WP_140037488.1\|2309483_2310521_-\|HAD-IIA-family-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	8.3344e-77
NZ_CP041040.1\|WP_140038742.1\|2305852_2307544_-\|DNA-repair-protein-RecN	gnl\|CDD\|223571	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair].	3.16009e-158
NZ_CP041040.1\|WP_140038739.1\|2300756_2301620_-\|segregation/condensation-protein-A	gnl\|CDD\|224273	COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family) [Replication, recombination, and repair].	1.43039e-43
NZ_CP041040.1\|WP_140037483.1\|2302639_2303542_-\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|234713	PRK00283, xerD, tyrosine recombinase.	6.27984e-146
NZ_CP041040.1\|WP_140037480.1\|2297472_2298147_-\|(d)CMP-kinase	gnl\|CDD\|236546	PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed.	6.79991e-67
NZ_CP041040.1\|WP_140037475.1\|2292287_2292956_+\|lysoplasmalogenase	gnl\|CDD\|377946	pfam07947, YhhN, YhhN family. The members of this family are similar to the hypothetical protein yhhN expressed by E. coli. Many are annotated as possible transmembrane proteins, and in fact they all have a high proportion of hydrophobic residues. A human member of this family, formerly known as TMEM86B, is a lysoplasmalogenase that catalyzes the hydrolysis of the vinyl ether bond of lysoplasmalogen. Putative conserved active site residues have been proposed for the YhhN family.	8.37119e-15
NZ_CP041040.1\|WP_140037472.1\|2290991_2291576_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.60463e-06
NZ_CP041040.1\|WP_140038740.1\|2301645_2302479_-\|AAA-family-ATPase	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	1.24476e-82
NZ_CP041040.1\|WP_140037486.1\|2307540_2308455_-\|NAD-kinase	gnl\|CDD\|235121	PRK03372, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional.	9.26772e-155
NZ_CP041040.1\|WP_140037478.1\|2294932_2295871_-\|NUDIX-domain-containing-protein	gnl\|CDD\|240033	cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	2.36168e-12
NZ_CP041040.1\|WP_140037476.1\|2292955_2293342_+\|RNA-binding-S4-domain-containing-protein	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	1.09525e-22
NZ_CP041040.1\|WP_140037487.1\|2308451_2309249_-\|TlyA-family-RNA-methyltransferase	gnl\|CDD\|224110	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis].	8.47851e-91
NZ_CP041040.1\|WP_140037484.1\|2303544_2304123_-\|NUDIX-domain-containing-protein	gnl\|CDD\|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	1.26055e-43

>NZ_CP041040.1|WP_140037481.1|2298139_2299285_-|prephenate-dehydrogenase
MTDTTSAPTGARSSVAPRIAARLSGTVRVVGAGLLGASIGHALRAKGVDVVLADTSPAQLRLAIDYGAGRSAADDDSPVLIVVAVPPDVTADVIESELARFPHAVVTDVASVKLEPFHSLQRRGVDLTRYIGSHPLAGRERGGAISARADLFIGRPWVVCRDADTKAADLALVEALALDVGAMPLEMTPEEHDRSVALTSHVPQVVASLLAGRLAEADEGALRLSGQGVRDTTRIAASAPELWVQILGANAGPVVEILDALASDLREVSDALRAPEAPGARRVVAETIRQGNDGVERLPGKHGQNRRFESLIVMIDDTAGQLGRLFGELGELGVNVEDLRLEHSPGAQFGLAEISVEPAALHGAITGLQERGWRIAGTTND
>NZ_CP041040.1|WP_140037480.1|2297472_2298147_-|(d)CMP-kinase
MTDFIAIDGPAGSGKSSVSKAVARTLGFGYLDTGSAYRALAWHVLDRGADTADAAAVLDAVADFPVRLGLDPDDRTVRVGDVDVTDAIREPSVSGAVSGVARVPEVRDRVNRLFRTLVAEAPYPAVVVEGRDITTVVAPDAPVRILLTAAPEVRAARRAGELAGENAETVAAALHKRDASDSAVVDFLNAAEGVEVVDSTELDFTQTIDAVLAVIERTRGVHHG
>NZ_CP041040.1|WP_140037479.1|2295959_2297480_-|ribosome-biogenesis-GTPase-Der
MADDEYEGGPDQLAEKMAQLDEQLAEARAETLRAGLADYDLDDEDAALLAGITMGEDGIQFFPALPVVAIVGRPNVGKSALVNRILGRREAVVEDTPGVTRDRVTYKAEWADRRFSLVDTGGWEPDARGIDRSVAAQAEVAIDLADVVLFVVDAMVGATSTDEHVVKMLRKSGKPVFLVANKIDDARQEPEAAALWNLGLGEPHPVSAIHGRGVADLLDELLKTLPDVSAVAKAEIGGPRRVAILGRPNVGKSSLLNKAAGEERVVVNDLAGTTRDPVDEIVELGGKLWRLVDTAGIRRRVHMAQGADFYASLRTSAALEKAEVGVVVLDVSESISEQDVRIIDLVLESGRSLVLAFNKWDRLNDDDLENADRRRYLEREIEKDLAHVAWAPRVNISAKTGRHLDKLVPALETALTNWDRRIPTGKFNAFLAELVAEHPHPLRGGKQPRILFGTQASTRPPTFVLFTTGFLDPGYRRFIQRRLRELYEFDGTPIVINMRVREKRQR
>NZ_CP041040.1|WP_140037478.1|2294932_2295871_-|NUDIX-domain-containing-protein
MTVVPPAPGEPRRPDGPRNPGDAWVVAPSGEKYWGRFGAAGLLAFDAERGILLQHRVSWSHFGGTWGLPGGAMHEGESAIVGAVREAQEEAGVPDGAVRPRFTSVLDLDVWSYTTVIADVVRPFEPVISDPESVALEWVPVDEVDSRPLHPGFGSAWPALRALLEVRPSLVVDAANVVGSVPDGWWKDRAAAATRLSGRLNGLAVPASDLGVGGTTWFPQIALVVEGQARGIATPSSDADAEAPELLPAGGVSIVRADAAGDDAIVAEVERRTRAGQHVIVVTSDRELQHRVEAAGAAQIYSAGWLLDVLPQ
>NZ_CP041040.1|WP_140037477.1|2293381_2294839_+|DUF222-domain-containing-protein
MAQRTDLDLDLDERRRLLDEWVATRRQIAALEAQSYALLVERIKVHDADVSESPHHRDAIYRSMIAEYSAAGHIPKGSVEYAFTDARTLTRALPAVHASFAAGAITARHVREIVRASEIVDDAIRDGRVEPATMGLYETAVLVVAEQDTAQRTKIHARTVAAGLVGETVVGAQRRAAAERCVTVRSVGDGLAALTAILPEWVAVAISDRLTQMARHIARTRDEREPILEPLDDDSENSLYLSDLSPEDPRYGAYFEAGVIAADGTFVTDPLAGLIDPMTDPASPDIEHLSGDTRTFDQIRADLLSDLLLSSDPSEANGTGLENVSARIQVTVAASTLAGDDDRPAELDGHGPLDPDVARGLAGRCTGWSRLFLDATGLVTETDSYSPTEQMRRFLRARDQHCRFPGCRMPVHRCEIDHNHDHARGGRTRIDNLSHFCTTHHSLKHPDIDERHRWRARQTPDGSITWTSPLGRDYVDPPRRRVMFV
>NZ_CP041040.1|WP_140037476.1|2292955_2293342_+|RNA-binding-S4-domain-containing-protein
MADAARVDSWLWAIRVYKTRSAATTACRAGHVRVNGDRVKAAQHVRIGDELRVRIAGFDRILIVRQLLVKRVGAPVAALAYEDRTPEREPQAALGLRDRGAGRPTKRERRDIDKLRGRGYEDDGIFHG
>NZ_CP041040.1|WP_140037475.1|2292287_2292956_+|lysoplasmalogenase
MQRRRQLDPLLWAFLPYIAVSVTHVVLLSLDSPAAGPTKLLLMPLLAAPVLVSLRRIRERAAQALILGALAFSWLGDSAGALFPAAPEVPLMLMFFGIAHLAYITLFIRHLAQRRMPRWALVYAGWWVAMVAFVGPHAGGLLIAVAFYGLVLGATAAFSTRCHPRVAIGGAFFLASDTVLALRLFLPDSLPAWSSPAIMATYTIGQGLIIAGALIALRKRGA
>NZ_CP041040.1|WP_140037474.1|2291791_2292247_+|hypothetical-protein
MSDKYPTIEDPELGALTRATTELSDGTVLTHDWYAGGTVVNGAPLDLMIEGTDADEAAALLPHVHETIAALGVLRRLATDAVVAAFSNVTPEQYELDDAASDLSLETLEASADGTVVLHLIDTCGQHFPEGYWPAVHLGTDGQITQVTVES
>NZ_CP041040.1|WP_140037473.1|2291572_2291770_+|hypothetical-protein
MTEETELPASMGKVARRELALQGFTRLEQFDGVSESTLLAIHGVGPKAIRILREQLESLGSALRP
>NZ_CP041040.1|WP_140037472.1|2290991_2291576_+|GNAT-family-N-acetyltransferase
MATITTEVATTARWDDVQHALTGGGDGASCQCIWPMLSNKEWNETTTPQRTEMLRDEIEAGPPPGLIAYVDGDAAGWIRIGPRTKQQRVPRTRMIAAASAEPFDDDSVWAVTCFVVRREHRRSGLNLELLRAAVDFARTSGARLIEGYPVDTRGEKKRTNDLFHGMLTTFLAAGFEERAEMKPGRALVALELSA
>NZ_CP041040.1|WP_140038739.1|2300756_2301620_-|segregation/condensation-protein-A
MSVSPAQSVSSAESAAPAEAAQEAPVPDAGFRVSLSNFDGPFDLLLNLISKHEMDITEVSLSAVTNEFIAYLRELDDDEELDQASEFLVVAATLLDMKVAGLLPQGELVDAEAVALLEARDLLFARLLQYRAFKEVSAWFARCLQREDRRHVRAVRLDEKHRRKTPELVWSLNVDDFAALALLAFAPKEIPHVGLDHLHAPLVSIREQAAIVVTLLRAAESVSFRELVAGVSEPGIVVARFISVLELYRHAALSFEQLEPLGELTLRWAADSWSDETLASLGADYDR
>NZ_CP041040.1|WP_140038740.1|2301645_2302479_-|AAA-family-ATPase
MGPTGRPYHGFATPEPLASHGPARIIALCNQKGGVGKTTTAINLAAALAEYGRKVLAVDFDPQGALSAGLGIQTHDVPTVYDLLLDTKRDAHDAIVPSGVDGLDVMPANIDLSAAEVHLVNEVARETILARVLRQVAGEYDVILIDCQPSLGLLTVNALTAAHGVIIPLECEFFALRGVALLIETIDKVRDRLNPSITMDGLLATMYDPRTLHSREVLERVVEAFGDDVLETVIGRTVKFPDASVSGVPITEFAPEHAAAQAYLRLARELVTRGAVA
>NZ_CP041040.1|WP_140037483.1|2302639_2303542_-|site-specific-tyrosine-recombinase-XerD
MQLDRALDTYLRHVTIERGLSEHTIAAYRRDLGLYLEWLDAEGITDTAEISTAVVGRFIADRSGAEPAPAATSLARLQSSVRGWHRFLAREGIEQDDPSGRLRPPKAPRRLPKALTIDQVERLLGAPSAEEPIGIRDRALLELLYATGARVSEAVGLDVDDLAHGDVLRLRGKGSKERIVPIGSFARDAVDAYLTRVRPGLAAKGRASARLFLGARGAPLSRQSAWLVIRSAAEHAHITAEVSPHTLRHSFATHLLQGGADVRVVQELLGHASVATTQIYTHVSVDTLRDIYATSHPRAR
>NZ_CP041040.1|WP_140037484.1|2303544_2304123_-|NUDIX-domain-containing-protein
MPEFDDLRDEPFEPEVLQSDLAYEGAVWNVRDDRVRYGDGEIRRQYVAHTGAVAILALDDEGRVLLIQQYRHPIRHRDWELPAGLLDVAGEEPLGAARRELAEEADLVAAHWEPLVSTWTTPGGNDELIHVFLATGVSAAQNAHAREDEEADIRVEWVPLDAAVSAVLDGRMRNGILGIGVLAAAQRLRDRS
>NZ_CP041040.1|WP_140037485.1|2304137_2305835_-|CTP-synthase
MNSSSAGPKNDTTKHIFVTGGVVSSLGKGLTAASLGNLLTARGLRVVMQKLDPYLNVDPGTMNPFQHGEVFVTDDGAETDLDIGHYERFLDINLSEAANVTTGQIYSQVIARERRGEYLGDTVQVIPHITDEIKRRMRLQATEDPRPDVIITEVGGTVGDIESQPFLESARQLRHELGRDSVFFVHVSLVPFMGASGEQKTKPTQHSVAALRQVGIQPDALVLRSDRPVSESNRNKIALMCDVDAEGVINTVDLPSIYDIPSTLNDQGLDSYIVRRLGLDQKAADEVDWTRWSKVLHAVHNPKHEVTIGLVGKYIDLPDAYLSVTEALKAGGFAQETKVNIRWIPSDRCETPEGAKEQLGELDGICVPGGFGIRGIEGKLGALKFAREQGIPTLGLCLGLQCMVIEYARDVAGIADASSSEFDPQTSEPVIATMAEQVEILDGGDLGGTMRLGLYQAALAEGSLARELYGAPEASERHRHRYEVNNAYRARLSEAGLVFSGLNPELDLVEYVELPRDVHPYYIATQAHPELRSRPTAPHPLFRGLVGAAIDRHRSSELFDVEADA
>NZ_CP041040.1|WP_140038742.1|2305852_2307544_-|DNA-repair-protein-RecN
MIEEMRMQGLGVIADAVLPLGAGFTAITGETGAGKTMVVTGLGLLLGQRADSGAVRAGAAQASVAGVWIVPETGDVADIVADAGGELEPAGSGSAELYVSRTLSAEGRSRASVGGRAAPAGVLSALAEELVVVHGQSEQLRLRSSAAQRDALDRFGGVPIAEALDAYSSSFTRWRELDAEIADITENRDRRAEEASRLREALALIEAAAPEPGEDVELAARAERLANAEELRLAAALAHSALSSEEGEPDASALVAEARRALERVSDSALTDISAALADIGYRIADVAAQLSAYLADLDETGPHELAAVEERRAALGTLIRAHGSLDEALELWQTGSTRLAELDDDGERLDRLEAERDAARAALDAHADALTAERTAAAARLGVAVSEELHALAMPDATLEVAVTPGTESAHGRDDVAILLAPHPGAEPRSVGKGASGGELSRVMLAIEVVIAGTDPVPTFVFDEVDAGIGGAAAIEVGRRLARLAEKSQVIAVTHLAQVAAFATNHLSVVKSNDGAVTASSVRRLEGQEREAEMARLLSGLTDSDAAITHARELLSLGTSTS
>NZ_CP041040.1|WP_140037486.1|2307540_2308455_-|NAD-kinase
MNERNILVVAHAGREATVEAARKVVDELRDAGARPVLPPDESGDLRAVDPHFADVDILGETVQQDELELAIVLGGDGTILRAAELVRGCSAPVLGINMGHVGFLAEIDRDDMDAAVRRVIDRDYEVEERLALSVRVKDADGAVVYETFALNEATVEKASRERMIEVVLEIDGLPLSSFGCDGMVVSTPTGSTAYNFSAGGPVIWPSVEAIAVVPLSAHALFAKPLVVSPDAAVAIEMLEGTSGSGILWCDGRRSHDLPPGARVVVRKSSRPVRLARLHPTEFTNRLVRKFQLPVAGWRGQGAAS
>NZ_CP041040.1|WP_140037487.1|2308451_2309249_-|TlyA-family-RNA-methyltransferase
MTRLDAALAARGLARSRTHAATLIADGLVSIDGRPVVKASTPVTDAAEITVAGADHYVGRGAHKLIAALDGFGISAEGRLALDMGASTGGFTQVLRERGARRVLAVDVGHEQMAGAVASDTGVVVVEGYNVRHMTPENLQEVTGEVEAPDLIVGDLSFISLEHVLPAVAGVAAPGADIVLLVKPQFEVGRTAVRGGLVTDPATRADAVARTAWSAWDSGLGMLGILTSPILGTHGNSEYLLHLAPGRGSDPSEWSDRINALAGRR
>NZ_CP041040.1|WP_140037488.1|2309483_2310521_-|HAD-IIA-family-hydrolase
MGLFSKKPALRTPLDGVDAVLADLDGVVYAGPGALPHAVESLNAAAATARLGYITNNASRTDASVAEHLSSLGLDVAPADVITSPQAAMRLLAGIVPPPATLLIVGGAGLVDEAEKAGYTVTRSAEDGPDAVVQGFAPEVAWTDLAEAAFALKVPEEEGGIPWIATNTDWTIPRERGVAPGNGTLVSAVHTAIGRLATVAGKPETPIFEEATERFGAKKPLFIGDRLDTDILGAVRAGIDSALVLTGIDRPKHVLAAPEGSRPTYILSDLRELHQPYPEVTSKDGVHSVNGASVRVVGADVEIVAEGDSQIDLLRAGASAIWASGTPVFVLRVPERLYDDPFHRP
>NZ_CP041040.1|WP_140038743.1|2310520_2311609_-|hypothetical-protein
MQADGDRPRFNDPHIPDEVTARDLHTSARNELKTLSKENAELVARHLAMASQLIDEDPARAHEHALAASRRAGRIAIVRETLGITAYATEDFALALRELRTYRRISGKDDQIALMVDSERGIGRPDRALETGRAVDRAALPTPVRVSLAIAMSGARLDQGDLELALGELEIPELDPDRAFEWSPALFAARAAVLEDLGRTDEAEFWAHRAEVAAQALGVDEAGDEEIIIEDGLIEGDFDDADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADADAEGHDVADVEDAADADDVEPEPSIDDEVRELLGEDDADSDDESADYVAEDSAASETSKEA

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Crispr_ID: NZ_CP041040_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041040_4

3304821-3304896

Orphan

Consensus_repeat	Method
GACGGTGCCGACGCTCCTGTCGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041040_4

>merge|NZ_CP041040|4|3304821-3304896|CRISPRCasFinder
GACGGTGCCGACGCTCCTGTCGCCGCGGACACCGACGCCGACATCGCTGAAGACGGTGCCGACGCTCCTGCCGCCG

>NZ_CP041040|4|4|3304821-3304896|CRISPRCasFinder
GACGGTGCCGACGCTCCTGTCGCCG	CGGACACCGACGCCGACATCGCTGAA
GACGGTGCCGACGCTCCTGCCGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041040.1\|WP_140038280.1\|3305922_3307317_+\|DUF222-domain-containing-protein	unknown	unknown	gnl\|CDD\|238038
NZ_CP041040.1\|WP_140038278.1\|3302179_3303241_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|379770
NZ_CP041040.1\|WP_140038274.1\|3295381_3296038_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227065
NZ_CP041040.1\|WP_140038272.1\|3290425_3291730_-\|DUF21-domain-containing-protein	unknown	unknown	gnl\|CDD\|224173
NZ_CP041040.1\|WP_140038281.1\|3307322_3308651_-\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|234607
NZ_CP041040.1\|WP_056374518.1\|3309737_3310529_-\|uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|376850
NZ_CP041040.1\|WP_140038277.1\|3300251_3301979_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP041040.1\|WP_140038283.1\|3310525_3311542_-\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NZ_CP041040.1\|WP_140038284.1\|3311549_3312227_-\|chlorite-dismutase-family-protein	unknown	unknown	gnl\|CDD\|377705
NZ_CP041040.1\|WP_140038275.1\|3296154_3297885_+\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NZ_CP041040.1\|WP_140038273.1\|3293121_3293919_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NZ_CP041040.1\|WP_140038285.1\|3312294_3312576_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041040.1\|WP_140038276.1\|3298011_3300255_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP041040.1\|WP_140038287.1\|3312971_3313394_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041040.1\|WP_140038271.1\|3289670_3290396_+\|phosphotransferase	unknown	unknown	gnl\|CDD\|270699
NZ_CP041040.1\|WP_140038279.1\|3305327_3305777_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041040.1\|WP_140038282.1\|3308763_3309741_-\|porphobilinogen-synthase	unknown	unknown	gnl\|CDD\|236450
NZ_CP041040.1\|WP_140038836.1\|3293915_3295307_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213192
NZ_CP041040.1\|WP_140038286.1\|3312562_3312970_-\|phage-holin-family-protein	unknown	unknown	gnl\|CDD\|377816
NZ_CP041040.1\|WP_140038835.1\|3288899_3289268_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP041040.1\|WP_140038280.1\|3305922_3307317_+\|DUF222-domain-containing-protein	gnl\|CDD\|238038	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.	2.43554e-09
NZ_CP041040.1\|WP_140038278.1\|3302179_3303241_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|379770	pfam16113, ECH_2, Enoyl-CoA hydratase/isomerase. This family contains a diverse set of enzymes including: enoyl-CoA hydratase, napthoate synthase, carnitate racemase, 3-hydroxybutyryl-CoA dehydratase and dodecanoyl-CoA delta-isomerase. This family differs from pfam00378 in the structure of it's C-terminus.	1.81389e-156
NZ_CP041040.1\|WP_140038274.1\|3295381_3296038_-\|hypothetical-protein	gnl\|CDD\|227065	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism].	7.07365e-42
NZ_CP041040.1\|WP_140038272.1\|3290425_3291730_-\|DUF21-domain-containing-protein	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	3.81167e-112
NZ_CP041040.1\|WP_140038281.1\|3307322_3308651_-\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|234607	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase.	0
NZ_CP041040.1\|WP_056374518.1\|3309737_3310529_-\|uroporphyrinogen-III-synthase	gnl\|CDD\|376850	pfam02602, HEM4, Uroporphyrinogen-III synthase HemD. This family consists of uroporphyrinogen-III synthase HemD EC:4.2.1.75 also known as Hydroxymethylbilane hydrolyase (cyclizing) from eukaryotes, bacteria and archaea. This enzyme catalyzes the reaction: Hydroxymethylbilane <=> uroporphyrinogen-III + H(2)O. Some members of this family are multi-functional proteins possessing other enzyme activities related to porphyrin biosynthesis, such as HemD with pfam00590, however the aligned region corresponds with the uroporphyrinogen-III synthase EC:4.2.1.75 activity only. Uroporphyrinogen-III synthase is the fourth enzyme in the heme pathway. Mutant forms of the Uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria in humans a recessive inborn error of metabolism also known as Gunther disease.	1.8539e-47
NZ_CP041040.1\|WP_140038277.1\|3300251_3301979_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.83227e-158
NZ_CP041040.1\|WP_140038283.1\|3310525_3311542_-\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	7.21982e-111
NZ_CP041040.1\|WP_140038284.1\|3311549_3312227_-\|chlorite-dismutase-family-protein	gnl\|CDD\|377705	pfam06778, Chlor_dismutase, Chlorite dismutase. This family contains chlorite dismutase enzymes of bacterial and archaeal origin. This enzyme catalyzes the disproportionation of chlorite into chloride and oxygen. Note that many family members are hypothetical proteins.	3.0317e-80
NZ_CP041040.1\|WP_140038275.1\|3296154_3297885_+\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	2.33882e-17
NZ_CP041040.1\|WP_140038273.1\|3293121_3293919_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	1.51932e-20
NZ_CP041040.1\|WP_140038276.1\|3298011_3300255_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP041040.1\|WP_140038271.1\|3289670_3290396_+\|phosphotransferase	gnl\|CDD\|270699	cd05150, APH, Aminoglycoside 3'-phosphotransferase. APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibiotics. The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	1.16574e-67
NZ_CP041040.1\|WP_140038282.1\|3308763_3309741_-\|porphobilinogen-synthase	gnl\|CDD\|236450	PRK09283, PRK09283, porphobilinogen synthase.	0
NZ_CP041040.1\|WP_140038836.1\|3293915_3295307_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	6.6514e-75
NZ_CP041040.1\|WP_140038286.1\|3312562_3312970_-\|phage-holin-family-protein	gnl\|CDD\|377816	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III. Phage_holin_3_6 is a family of small hydrophobic proteins with two or three transmembrane domains of the Hol-X family. Holin proteins are produced by double-stranded DNA bacteriophages that use an endolysin-holin strategy to achieve lysis of their hosts. The endolysins are peptidoglycan-degrading enzymes that are usually accumulated in the cytosol until access to the cell wall substrate is provided by the holin membrane lesion.	1.15888e-15

>NZ_CP041040.1|WP_140038278.1|3302179_3303241_-|enoyl-CoA-hydratase/isomerase-family-protein
MTESSAAPRVLVRTEGALGRLTLNRPEAINALDPGMIQLLTQALEDWRHDTDVQIVVIDGAGERGMCAGGDVRGLHGQIVAGRTEETTEFFRAEYALNAMIAEYPKPIVSIADGITMGGGVGLSGHAAIRIVTERSKLAMPETRIGFTPDVGGTRLLGRTPGRFGEYFGLTGSTMTGADAVLLGFADHFVPSDRLDALREALAYRADPTGPAEIVLLFDETPEPSALPASRDWIDRAFSADTIAEIVSRLRAEEAADASTTADLLESLAPTGLAVTLDAVREARRLPDLRAALEGEYRRVMWFVTRHPDLVEGIRAQLIDKDRNPKWNPATIAELPSDAGAEARDFVPERSLF
>NZ_CP041040.1|WP_140038277.1|3300251_3301979_-|ATP-binding-cassette-domain-containing-protein
MLGKILLRYLARYKWLLAAVLVFQFASALATLYLPRLNEDIINKGVAQSDTAYIWRTGLFMLAVSLGQIIASVIATYFAARASMGAGRDIRADVFGKVSGFSEREVSQFGAGSLITRNTNDVQQVQMLAMMGATMLVTAPLLAIGGIIFAVQTNIGLSWLIAVSVPLLLIVAGLVVSRMVPLFRSYQGKLDTVNRVLREQLTGVRVVRAFVRESIEEERFRGANTDIMVVGRKVGSLFVLLFPLFMLILNVTIVAVVWFGGIEVNSGTVQVGTIFAFMQYIGQIMGGVIMASFMAIMIPRAAVSAERIGEVLETQSSMERPANGVTDFPTPGSVAFDDVEFTYPGADSPVLKGISFAAEPGETVAIVGSTGAGKTTLVSLIPRLFDVSGGAVFVGGADVREADVESLWATIGLVPQRPFLFTGTVASNLRYGREDATDEELWHALEIAQGRDFVEEMPQGLESRITQGGTNVSGGQRQRLAIARAIVRQPQILVFDDSFSALDLTTDARLRQALWRELPHVTKIVVAQRVSSITDANRIVVLEGGTMVGVGTHEELLETSTTYREIVESQLGVDA
>NZ_CP041040.1|WP_140038276.1|3298011_3300255_-|ATP-binding-cassette-domain-containing-protein
MSEQNTSKTRRGRAAKASAATTAVEPEMTEEEKYEAELAEKARQDGGGWDSVAPGKADNFGKSFSRMIGLLKPSAVWFILVSIAGAVGVVLTVAAPKVLGEATNLIYKGFISVQLAQANGDFPGFPAGTPQDDVVAALRRGGQDDFANQVAALGSFRVGDGVDFDALRWIIIAVLAIYVTAAFLSWLQGYVINVIMVRTMWRLREAVEAKINRLPLSYFDKVQRGDLISRVTNDIDNITQTMQQSLSGAITAVLTVVGVLVLMFSISWQLALVALVALPLMGVIFGVIGPRSQKAFGTQWRKVGRLNARVEEAFSGHALVKVFGREQDALEKFKDENEELFQASFKAQFLSGIIMPAMTFVGSLTYVGIAVLGGLMVASGQLRLGDVQAFIQYSQQFTQPLSELGGMAAVVQSGTASAERVFELLDTEEQEADAVDAPKLADGKGVVEFENVAFSYTPERPLITDLSFRVEPGQTVAIVGPTGAGKTTLVNLIMRFYELNGGWILLDGQDISEVTREQLRSRTGMVLQDPWLFAGSIRENIRYGRSTATDDEVLEAAKATYVDRFVRSLPEGYDTVLDEDASNVSAGERQLITIARAFVAQPSILILDEATSAVDTRTEVLLQHAMAALRQGRTSFVIAHRLSTIRDADLILVMEHGDIVEKGTHDELITAQGAYWRLYQSQFEQAATDIDAEDALTGSTPVVVSGDAEEAAAAAQVGVSVGAQVPAAEAAAAQSVVERSDDGGHKA
>NZ_CP041040.1|WP_140038275.1|3296154_3297885_+|D-alanyl-D-alanine-carboxypeptidase
MPTLASAPVAATRNSARVRYREEVTAPDSAEATASAVPAGDASTPDASAPAGPTAEASVPEATAPAGSAADASGPAGSTVALPEADVSAAVETDAAPESGADDEAAAIFAPDTTPDTAPEAQWAEGASGGTPLTWVDAVEIARHPATEALDDTPPAASGGALLTGAHLRPAITRPGVLVPLGVLVGLLGTYVGSAMLWPLHEVAPAVQAVELTTIAAPAAAITWPAQGSAAVGIGGIGTTSSSLDAAAIASVTKVVSSLMVLDRMPLAVGEQGPEFSFTRADNLAYWDYRRSDQSALDVPVGGTLTEFQLLQGTLLGSANNYIDRLSQEIWGSPSAFTAAAEVWLRDRGLDDITIVTPSGFDDRNRATPESLVALAELAMQNPVFAGIVGTPSVDLPGAGTVVNTNGMLADPGVVGVKTGTLGDSWNLLTAKVITLDDTTVRLYASVLGQADDAQRLTETRSLFAQVETALEQLPPAVAAGTVVGTVTTPWGATTDVVTDADADVVLWNGATAQASTDFSLGDNRESGDEVGTMTSAGPLNTVTTSLSLADDVDAPSPWWRLTHPLELLGITAAQR
>NZ_CP041040.1|WP_140038274.1|3295381_3296038_-|hypothetical-protein
MSTSTSGSTTESASVSRASKGLGRPELWRWRVVDIVVASVIAVACALIFLLWNVGYEVPSSILTPLLPGVQGLLAGPWLIAGVLGGLIIRKPGAALYTELVAAIISALVGNAWGPLTIVSGLVQGLGAELIFFVFLYGVWRLPVAMLAGAGAGLACGINDRILWYAGADTLFTTAYIVSTTVSGAVIAGLGAWLIARGLAATGALSRFAAGREVTARV
>NZ_CP041040.1|WP_140038836.1|3293915_3295307_-|ATP-binding-cassette-domain-containing-protein
MRDIALRIEPGERVLLLGASGSGKSTLLQGFGGVLGGADEGETHGGLLVDGVPPTEARGRVGMVLQDPDAQTILARVGDDVAFGCENLGIPRDEIWQRVRMALDAVELDVALDRSTAALSGGQKQRLALAGVLAMRPGAILLDEPTANLDPEGVRDVRDAVAAALDATGATLVVIEHRIDVWLPLVTRVIVLGAEPEGTVVLADGSPDEVLGARGAELAASGVWVPGHPPAVPPAPAHLPGDTLLAARGLTVARRRGLAVAGPFDVEVRAGEVLGVTGANGAGKSTLGLTLAGLIPAEDGRVSALPALAAGENPDPIRWSSRALLTRIASVMQTPEHQLLAKTVREELSVGPRALKLSDAEIAARVDDLLERLRLTSLAGANPYTLSGGEKRRLTVAAALATRPRMLVLDEPTFGQDATTWAELVGLIARLRDEGTAIVAISHDEAVLEALHARRLEIGEVDR
>NZ_CP041040.1|WP_140038273.1|3293121_3293919_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MIDPLTARIERAGPIAPRSALAKLAAALLIALPLVLTIDVVSASVALLLEIPLLLLAGLRAKEFWTRTAVLWIAAPLSAVTIALYGATSGTVHFEWLVMRVSDGSLTLAAATAVRVLAIGLPAVVLFVTVDPTDLADDLAQRVRLPARFVVGALAGMRMLGLLADDWRALSLARRARGVADEGRVRRAFGMAFALFVLAIRRGSSLATAMEARGFGGTGRRSWARESRWDRRDTALVVVAAVIPVVAITVAVLTGAWNFILGPTA
>NZ_CP041040.1|WP_140038272.1|3290425_3291730_-|DUF21-domain-containing-protein
MGDLAVNIALVFVFVLVGGVFAATEMALVTLRESQINAIAARGRRGEKVASLARNPNTFLSAVQIGVTVAGFASAAYGATSIAPSVAPLLENLGVAAPLALTLATVLLTLVIAYLSLVLGELVPKRLAIQRNAQFAYAVAPVLDGFATVMRPVIWLLSVSTNAVVRLLGGDPNKAADELSDEELRDIVATHQSLPDDERRILDDVLSLRGRQVSEVMRPRPEVVALDGAATLADAITQVRELPFSRYPVIDASLDDIVGFVHVRDLFEAAHDDSTREVLGLMRPVEYVPSTAGVLPTLTRMRAAGHQIAVVVDEYGGTDGIVTLEDLVEEVVGEIFDEYDTEDRMQDAGGALDGRLNLQDFAEITGIALPRGASDTVAGFVMEMLGRLAVVGDSVEVPGATIRVTAVDRRRIAEIRVVLHEEPGSDAAEGGTRA
>NZ_CP041040.1|WP_140038271.1|3289670_3290396_+|phosphotransferase
MSIPSATTTIPPIVLSLAAGATLTPVWLNGIGGLTFRTDDGRYIKWGPHDAEANMRDEAERMRWARQWIPVPEVLDQGEDDAHEWLVTAALPGHSAVDHRWSEAPETAVRAVGAALRAMHDSLPVEQCPWAWDPAWRIANAADRGVTVPADLHRPPPVDRLVVCHGDACMPNTLLDDAGRPLAHVDLAALGTADRWADIAVASMSTEWNFGPGWADALIEAYGVAPDRERLEYYRRLWNET
>NZ_CP041040.1|WP_140038835.1|3288899_3289268_-|hypothetical-protein
MSSLDDALQQLLAIEGATGAAIVDYGSGMALAQGGNPSFDLGIAAAGNSNVVRAKLATMRDLGVTDEIDDILITLSSQYHLINVLNTTGANGLFIYLVLNSASANLALARHKLKGIAAQIEV
>NZ_CP041040.1|WP_140038279.1|3305327_3305777_-|hypothetical-protein
MVTLLLDQTQLEIVLSPIERAASFHRDNVRLVRDTITKVQLIDDAWTWLRGVPNPGTHIPGVLAAGTWKAAGSVDFVLIRRRRPSVVIDLSGDAQYRRLILTTSHGLALTQALRLDVSDEPADVEEIVATSPTPVSKGSRRPVIRPRPA
>NZ_CP041040.1|WP_140038280.1|3305922_3307317_+|DUF222-domain-containing-protein
MTSATDPDLEQRAELLDSWVEKRRQIAVLEAEASALLAERMRLSQSDCDENPFHRDVIHRSMIAEHSAAGRMAQGSIEYAFTDAAFLERGHPRVQQAFRDGIVTAAHVREIVRAAGVVREAVNNGRADAEALEDYDIAAVTVAERETPARTRVHLRALAAVLAGSTVNERHARALSERTVTVRPAGDGLAVLTAVLPEHLAVAILDRLTQLARAVIAGRADREPVLEPIDDGENPIYPDDIAADSAARDDYAIFGEGTFTTDPTVEHIPADTRTIDQVRADLLIDLLLAADPSAANGSGLDNIRGRIHVTVASTTLAGCDERPAELDGHGPLHPGVARDLAGRMRGWSRLFLDPTGLVVKTDNYAPTEAMRRFLRARDQHCRFPGCRMPVHRCQVDHTFDHAKGGRTEIHNLAHLCASHHVLKHPDIADEHRWSARQLPDGTIDWVSPLGRTYRDDARRRVMFA
>NZ_CP041040.1|WP_140038281.1|3307322_3308651_-|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme
MTDRNDDLFSAARTVIPGGVNSPVRAYGSVGGTPRFLASAKGATVTDAAGNEYVDLVASWGPALLGHAHPEVVAAVQEAATRGLSFGAPTEGEVELAQLIADRVRFGEIRPVERVRLVSTGTEATMTAIRLARGATGRDLLVKFAGHYHGHSDGLLAAAGSGVATLALPGSAGVPAPIAAQTLVIDYNDPDALAAVFAEHGDRIAAVIVEAAAANMGVVPPLPGFNRLLAETAHAHGALLILDEVLTGFRVHSAGFWGLQAAAGEEYLPDIITFGKVVGGGMPLAALGGRAEVMDLLAPLGPVYQAGTLSGNPLSVAAGLATLRLATPEVYTAVDAAAARVSSALEAALADAGVAHAVAHAGNLFSASFRASAPRTYAEAQAQESFRYAPFFHAMREQGVALPPSVFEAWFLTAAHGKEELQRIEAALPIAARAAAAAARGV
>NZ_CP041040.1|WP_140038282.1|3308763_3309741_-|porphobilinogen-synthase
MSFPDIRLRRLRQSPAVRGLVRETSLEPRQLVLPLFVREGITEAAPIGSMPGVAQHSLDSLRAAAVEAAEAGVGGVMLFGVPAVRDAQGSGADDPKGILNVATEALAAEVGDALVVQTDLCLDEFTDHGHCGVLAADGSVDNDATLERYASMALAQARAGSQLLGLSGMMDGQVAVIREALDSKGFTDTLLLAYAAKYASAFYGPFREAVDSQLKGDRRTYQLDPGNRREGVREAVVDEQEGADIVMVKPAMAFLDVLREVRDTVHIPVWAYQVSGEYAMIEAAAANGWIDRRASILESLLSIRRAGADVVLTYWATEAARWLRH
>NZ_CP041040.1|WP_056374518.1|3309737_3310529_-|uroporphyrinogen-III-synthase
MTNSKQDRPLDGWRILVPRGGPWGDGVAASLRSRGAVPVVAPLINFAATTDQAALDVALTRLAAGEYDWLTVTSATTVDVMFAHRAVVPRRTKIAAVGETTAAALQAVGYEVAMVPDEDNSAAGMAEQLIALEAEPRRILALRSEIAKPVLSVLLQEAGHDVDSVVAYRTVGVPVTDRIKRDVENGRINAILITSGSVAEQVREQFPLIPDETLLAAIGPRTAKDADKAGLPITVVADRQTVDALIDAVSSYTLPHAADELAP
>NZ_CP041040.1|WP_140038283.1|3310525_3311542_-|hydroxymethylbilane-synthase
MSTQSHTAVPIRLGTRRSALAQAQSGHVAAALEKISGRPVELVPITSEGDTNRASLSEIGGQGIFATRLREALLAGECDFLVHSLKDLPTAIPEGLVIAATPVREDARDVAITRGGTPLHQLRSGSKVGTGSPRRIAQVHRRAPRAEVVDIRGNVDSRLQRVASGELDAVILAAAGLSRLGTDSPLHREELGLSEWPTAPGQGSLAVETRSDAPVELLAALAELDDHDTRLAITVERGILEGLDSGCQAPMAAHAVVNGDEIRVRTVVYSTDGGRRIGLDVTETLNGEYIRRNGSGNGADAAGGADPMRTAREFGLSVAHRLLEQGAADLVSREHSSS
>NZ_CP041040.1|WP_140038284.1|3311549_3312227_-|chlorite-dismutase-family-protein
MSDAREENPSGFTLWAVWRRNPDIAVTESDSTELETIVSYIEDSGVTVRGFYDVSGLKADADLLVWLHGDTAEDLQKALRRLRRTELLRTLLPVWNVMGVHRDAEFNRAHVPGFLRGVEPKDWLCLYPFVRTPEWYLAPEEERRKMLADHGRKGAAFTGVIANTVAAFALGDYEWILPLEADEVTELVDLMRDLRYTDARLYVKEEIPFYTGRRLRFDEIADVLQ
>NZ_CP041040.1|WP_140038285.1|3312294_3312576_-|hypothetical-protein
MTNSEITRPLPKTAVPAGIVDPVQSARAELKAALAAIEVKGNFPRRIDKASKRAAAKARVFADRNPAAAIAGAVGGAVIVGGAVWAIARALAR
>NZ_CP041040.1|WP_140038286.1|3312562_3312970_-|phage-holin-family-protein
MPRGYRDRAEDSLLSLIGDLPELISSLVKAEIDAAKTWISKTAKDAGIGSVWFLVALFFLFWAVPVILVFAIAGLSSWWPVWLSALAVFGILILAVLLFALLGILKFRKVLARKNPAQAVGEDIRLVKEAGYDEL
>NZ_CP041040.1|WP_140038287.1|3312971_3313394_-|hypothetical-protein
MKGKIGLVVGIGVGYVLGTRAGRERYEQIKTQWLKVWNLDQVQDQVDKVKGYVGDKAAAVPGAIWTGVQKVVKSASGGDKTAGQRLDSAVAAGRKAADDIVDATEDAVEEVKDAAKKDDAKKPAAKKPASPRSTAAKSGS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	NZ_CP010644	Phaeobacter piscinae strain P36 plasmid pP36_a, complete sequence	47503-47528	3	0.885
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	NZ_CP020539	Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence	416005-416030	3	0.885
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	1328183-1328208	3	0.885
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	NZ_CP032054	Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence	930293-930318	3	0.885
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	NZ_CP032054	Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence	120968-120993	3	0.885
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	NZ_CP016560	Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence	587169-587194	3	0.885
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	NZ_CP020040	Streptomyces sp. 3211 isolate 3 plasmid p3211-1, complete sequence	394726-394751	4	0.846
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	NZ_CP010682	Phaeobacter piscinae strain P14 plasmid pP14_a, complete sequence	47453-47478	4	0.846
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	MF477236	Nocardia phage NTR1, complete genome	388-413	4	0.846
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	NZ_CP053858	Rhizobium pusense strain 76 plasmid pR76, complete sequence	357256-357281	4	0.846
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	NZ_CP025961	Rhodococcus qingshengii strain djl-6-2 plasmid pDJL2, complete sequence	66009-66034	4	0.846
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	NZ_CP012886	Mycobacterium chimaera strain AH16 plasmid unnamed1, complete sequence	66995-67020	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	856739-856764	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	MT711979	Streptomyces phage Endor2, complete genome	20581-20606	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	KC736071	Mycobacterium phage WIVsmall, complete genome	51252-51277	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	MG962361	Mycobacterium phage Alexphander, complete genome	2083-2108	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	MG812488	Mycobacterium phage Frankie, complete genome	2082-2107	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	KT281793	Mycobacterium phage Seagreen, complete genome	2083-2108	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	MN735431	Mycobacterium phage Hegedechwinu, complete genome	2082-2107	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	KM101124	Mycobacterium phage Squirty, complete genome	2082-2107	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	MK359343	Mycobacterium phage Pollywog, complete genome	2083-2108	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	MN586005	Mycobacterium phage Lorde, complete genome	2083-2108	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	MH669014	Mycobacterium phage Spikelee, complete genome	2083-2108	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	MT553347	Mycobacterium phage Awesomesauce, complete genome	2086-2111	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	MT889380	Mycobacterium phage Coco12, complete genome	2083-2108	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	MT684595	Mycobacterium phage Mova, complete genome	2084-2109	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	NC_028792	Mycobacterium phage Kimberlium, complete genome	2083-2108	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	MH020243	Mycobacterium phage TootsiePop, complete genome	2086-2111	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	MN369752	Mycobacterium phage Flathead, complete genome	2082-2107	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	NC_042315	Mycobacterium virus RockyHorror, complete genome	2083-2108	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	FJ174693	Mycobacterium phage Ramsey, complete genome	2083-2108	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	MK494118	Mycobacterium phage Cornucopia, complete genome	2084-2109	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	MF919501	Mycobacterium phage DaWorst, complete genome	2083-2108	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	MN310548	Mycobacterium phage Juice456, complete genome	2083-2108	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	NC_011054	Mycobacterium phage Boomer, complete genome	2083-2108	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	JN542517	Mycobacterium phage Drago, complete genome	2083-2108	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	MH020242	Mycobacterium phage Misha28, complete genome	2086-2111	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	MH001448	Mycobacterium phage UncleRicky, complete genome	2083-2108	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	KF114874	Mycobacterium phage Bobi, complete genome	2083-2108	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	MN585987	Mycobacterium phage Enby, complete genome	2083-2108	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	KM347889	Mycobacterium phage BuzzLyseyear, complete genome	2082-2107	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	MK494120	Mycobacterium phage Piper2020, complete genome	2086-2111	5	0.808
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	NC_015184	Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence	193484-193509	6	0.769
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	NZ_CP025513	Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence	355101-355126	6	0.769
NZ_CP041040_4	4.1\|3304846\|26\|NZ_CP041040\|CRISPRCasFinder	3304846-3304871	26	NZ_CP010860	Marinovum algicola DG 898 plasmid pMaD5, complete sequence	96911-96936	6	0.769

1. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to NZ_CP010644 (Phaeobacter piscinae strain P36 plasmid pP36_a, complete sequence) position: , mismatch: 3, identity: 0.885

cggacaccgacgccgacatcgctgaa	CRISPR spacer
ctgacaccgacgccgacatctctgat	Protospacer
* ****************** ****

2. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 3, identity: 0.885

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cggacaacgacgccgccatcgctgga	Protospacer
****** ******** ********.*

3. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 3, identity: 0.885

cggacaccgacgccgacatcgctgaa--	CRISPR spacer
ccgacaccgacgccgacatcg--gaacc	Protospacer
* *******************  ***

4. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to NZ_CP032054 (Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence) position: , mismatch: 3, identity: 0.885

cggacaccgacgccgacatcgctgaa--	CRISPR spacer
ccgacaccgacgccgacatcg--gaacc	Protospacer
* *******************  ***

5. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to NZ_CP032054 (Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence) position: , mismatch: 3, identity: 0.885

cggacaccgacgccgacatcgctgaa--	CRISPR spacer
ccgacaccgacgccgacatcg--gaacc	Protospacer
* *******************  ***

6. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to NZ_CP016560 (Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence) position: , mismatch: 3, identity: 0.885

cggacaccgacgccgacatcgctgaa--	CRISPR spacer
ccgacaccgacgccgacatcg--gaacc	Protospacer
* *******************  ***

7. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to NZ_CP020040 (Streptomyces sp. 3211 isolate 3 plasmid p3211-1, complete sequence) position: , mismatch: 4, identity: 0.846

cggacaccgacgccgacatcgctgaa	CRISPR spacer
tgcacaccgacgccgacatcgccgta	Protospacer
.* *******************.* *

8. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to NZ_CP010682 (Phaeobacter piscinae strain P14 plasmid pP14_a, complete sequence) position: , mismatch: 4, identity: 0.846

cggacaccgacgccgacatcgctgaa	CRISPR spacer
ctgactccgacgccgacatctctgat	Protospacer
* *** ************** ****

9. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to MF477236 (Nocardia phage NTR1, complete genome) position: , mismatch: 4, identity: 0.846

cggacaccgacgccgacatcgctgaa	CRISPR spacer
ggtacaccgacgccgacctcgcggaa	Protospacer
 * ************** **** ***

10. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to NZ_CP053858 (Rhizobium pusense strain 76 plasmid pR76, complete sequence) position: , mismatch: 4, identity: 0.846

cggacaccgacgccgacatcgctgaa	CRISPR spacer
ccgtaaccgaccccgacatcgctgaa	Protospacer
* *  ****** **************

11. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to NZ_CP025961 (Rhodococcus qingshengii strain djl-6-2 plasmid pDJL2, complete sequence) position: , mismatch: 4, identity: 0.846

cggacaccgacgccgacatcgctgaa	CRISPR spacer
ccgccaccgaagccgacatcgctgac	Protospacer
* * ****** **************

12. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to NZ_CP012886 (Mycobacterium chimaera strain AH16 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
tggacatcgacgccgacatcgccgcc	Protospacer
.*****.***************.*

13. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
aagtcaccgacgccgacctcgctgac	Protospacer
 .* ************* *******

14. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to MT711979 (Streptomyces phage Endor2, complete genome) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cccgcaccgacgccgacaacgctgac	Protospacer
*  .************** ******

15. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to KC736071 (Mycobacterium phage WIVsmall, complete genome) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cgtacaccgccgccgacatcgctatc	Protospacer
** ****** *************.

16. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to MG962361 (Mycobacterium phage Alexphander, complete genome) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cgtacaccgccgccgacatcgctatc	Protospacer
** ****** *************.

17. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to MG812488 (Mycobacterium phage Frankie, complete genome) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cgtacaccgccgccgacatcgctatc	Protospacer
** ****** *************.

18. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to KT281793 (Mycobacterium phage Seagreen, complete genome) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cgtacaccgccgccgacatcgctatc	Protospacer
** ****** *************.

19. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to MN735431 (Mycobacterium phage Hegedechwinu, complete genome) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cgtacaccgccgccgacatcgctatc	Protospacer
** ****** *************.

20. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to KM101124 (Mycobacterium phage Squirty, complete genome) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cgtacaccgccgccgacatcgctatc	Protospacer
** ****** *************.

21. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to MK359343 (Mycobacterium phage Pollywog, complete genome) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cgtacaccgccgccgacatcgctatc	Protospacer
** ****** *************.

22. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to MN586005 (Mycobacterium phage Lorde, complete genome) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cgtacaccgccgccgacatcgctatc	Protospacer
** ****** *************.

23. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to MH669014 (Mycobacterium phage Spikelee, complete genome) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cgtacaccgccgccgacatcgctatc	Protospacer
** ****** *************.

24. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to MT553347 (Mycobacterium phage Awesomesauce, complete genome) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cgtacaccgccgccgacatcgctatc	Protospacer
** ****** *************.

25. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to MT889380 (Mycobacterium phage Coco12, complete genome) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cgtacaccgccgccgacatcgctatc	Protospacer
** ****** *************.

26. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to MT684595 (Mycobacterium phage Mova, complete genome) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cgtacaccgccgccgacatcgctatc	Protospacer
** ****** *************.

27. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to NC_028792 (Mycobacterium phage Kimberlium, complete genome) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cgtacaccgccgccgacatcgctatc	Protospacer
** ****** *************.

28. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to MH020243 (Mycobacterium phage TootsiePop, complete genome) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cgtacaccgccgccgacatcgctatc	Protospacer
** ****** *************.

29. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to MN369752 (Mycobacterium phage Flathead, complete genome) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cgtacaccgccgccgacatcgctatc	Protospacer
** ****** *************.

30. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to NC_042315 (Mycobacterium virus RockyHorror, complete genome) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cgtacaccgccgccgacatcgctatc	Protospacer
** ****** *************.

31. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to FJ174693 (Mycobacterium phage Ramsey, complete genome) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cgtacaccgccgccgacatcgctatc	Protospacer
** ****** *************.

32. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to MK494118 (Mycobacterium phage Cornucopia, complete genome) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cgtacaccgccgccgacatcgctatc	Protospacer
** ****** *************.

33. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to MF919501 (Mycobacterium phage DaWorst, complete genome) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cgtacaccgccgccgacatcgctatc	Protospacer
** ****** *************.

34. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to MN310548 (Mycobacterium phage Juice456, complete genome) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cgtacaccgccgccgacatcgctatc	Protospacer
** ****** *************.

35. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to NC_011054 (Mycobacterium phage Boomer, complete genome) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cgtacaccgccgccgacatcgctatc	Protospacer
** ****** *************.

36. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to JN542517 (Mycobacterium phage Drago, complete genome) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cgtacaccgccgccgacatcgctatc	Protospacer
** ****** *************.

37. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to MH020242 (Mycobacterium phage Misha28, complete genome) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cgtacaccgccgccgacatcgctatc	Protospacer
** ****** *************.

38. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to MH001448 (Mycobacterium phage UncleRicky, complete genome) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cgtacaccgccgccgacatcgctatc	Protospacer
** ****** *************.

39. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to KF114874 (Mycobacterium phage Bobi, complete genome) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cgtacaccgccgccgacatcgctatc	Protospacer
** ****** *************.

40. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to MN585987 (Mycobacterium phage Enby, complete genome) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cgtacaccgccgccgacatcgctatc	Protospacer
** ****** *************.

41. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to KM347889 (Mycobacterium phage BuzzLyseyear, complete genome) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cgtacaccgccgccgacatcgctatc	Protospacer
** ****** *************.

42. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to MK494120 (Mycobacterium phage Piper2020, complete genome) position: , mismatch: 5, identity: 0.808

cggacaccgacgccgacatcgctgaa	CRISPR spacer
cgtacaccgccgccgacatcgctatc	Protospacer
** ****** *************.

43. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to NC_015184 (Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence) position: , mismatch: 6, identity: 0.769

cggacaccgacgccgacatcgctgaa	CRISPR spacer
acagcaccgacgccgacattgctgac	Protospacer
  ..***************.*****

44. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to NZ_CP025513 (Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.769

cggacaccgacgccgacatcgctgaa	CRISPR spacer
accgcaccgacgccgacattgctgac	Protospacer
   .***************.*****

45. spacer 4.1|3304846|26|NZ_CP041040|CRISPRCasFinder matches to NZ_CP010860 (Marinovum algicola DG 898 plasmid pMaD5, complete sequence) position: , mismatch: 6, identity: 0.769

cggacaccgacgccgacatcgctgaa	CRISPR spacer
gtgacaccgacgccgacatcgatctg	Protospacer
  ******************* *  .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage