CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP041067	Bacillus megaterium strain KNU-01 plasmid pKNU_01_3, complete sequence	0 crisprs	RT	0	0	0
NZ_CP041069	Bacillus megaterium strain KNU-01 plasmid pKNU_01_5, complete sequence	0 crisprs	NA	0	0	1
NZ_CP041068	Bacillus megaterium strain KNU-01 plasmid pKNU_01_4, complete sequence	0 crisprs	NA	0	0	0
NZ_CP041064	Bacillus megaterium strain KNU-01 plasmid pKNU_01_1, complete sequence	0 crisprs	RT	0	0	0
NZ_CP041065	Bacillus megaterium strain KNU-01 plasmid pKNU_01_2, complete sequence	0 crisprs	NA	0	0	1
NZ_CP041066	Bacillus megaterium strain KNU-01 chromosome, complete genome	6 crisprs	cas3,DinG,csa3,WYL,RT,DEDDh	1	4	3

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

25692 : 37361

Catovirus(37.5%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_140457198.1\|25692_26853_+	S8 family serine peptidase	A0A1B0T6A2	Bacillus_phage	8.2e-97	50.9
WP_035438661.1\|27218_27914_+	peptidase	NA	NA	NA	NA
WP_029319773.1\|28333_29425_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A2P1ELS7	Moumouvirus	2.3e-93	48.1
WP_029319771.1\|29417_30404_+	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	1.1e-44	32.3
WP_029319770.1\|30404_31229_+	SDR family oxidoreductase	A0A2P1ELT6	Moumouvirus	1.3e-32	34.6
WP_029319769.1\|31467_31665_-	hypothetical protein	NA	NA	NA	NA
WP_140457199.1\|32051_32675_-	peptidase	A0A1V0SAM1	Catovirus	3.6e-06	31.3
WP_029319765.1\|32870_33788_-	NAD-dependent epimerase/dehydratase family protein	A0A0E3FNQ3	Synechococcus_phage	2.7e-34	33.4
WP_029319764.1\|33919_35137_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_029319762.1\|35361_36276_+	NAD-dependent epimerase/dehydratase family protein	A0A222YY99	Synechococcus_phage	3.3e-24	25.4
WP_140457200.1\|36635_37361_+	glycosyltransferase	A0A1V0S9B9	Catovirus	2.5e-06	26.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP041066

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041066_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041066_1

885939-886098

Orphan

Consensus_repeat	Method
CAAAATGCTCAAGCATCTAAAAACAACTTCGGTACTGAATTTGGTAGCGAAACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041066_1

>merge|NZ_CP041066|1|885939-886098|CRISPRCasFinder
CAAAATGCTCAAGCATCTAAAAACAACTTCGGTACTGAATTTGGTAGCGAAACAAATGTACAAGAAGTGAAACAACAAAATGCACAAGCAGCGGCAAACAAAAGCCAAAATGCTCAAGCATCTAAAAACAACTTCGGTACTGAATTTGCTAGCGAAACAA

>NZ_CP041066|1|1|885939-886098|CRISPRCasFinder
CAAAATGCTCAAGCATCTAAAAACAACTTCGGTACTGAATTTGGTAGCGAAACAA	ATGTACAAGAAGTGAAACAACAAAATGCACAAGCAGCGGCAAACAAAAGC
CAAAATGCTCAAGCATCTAAAAACAACTTCGGTACTGAATTTGCTAGCGAAACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041066.1\|WP_098278441.1\|879491_880301_+\|recombination-regulator-RecX	unknown	unknown	gnl\|CDD\|237619
NZ_CP041066.1\|WP_013055167.1\|892536_893550_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213234
NZ_CP041066.1\|WP_013055163.1\|886820_887357_+\|DUF402-domain-containing-protein	unknown	unknown	gnl\|CDD\|184219
NZ_CP041066.1\|WP_013055168.1\|893542_894334_+\|daunorubicin-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226953
NZ_CP041066.1\|WP_013055165.1\|889313_890402_-\|aromatic-acid-exporter-family-protein	unknown	unknown	gnl\|CDD\|226614
NZ_CP041066.1\|WP_029324552.1\|882344_883325_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|377294
NZ_CP041066.1\|WP_013081549.1\|887526_889278_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP041066.1\|WP_013055153.1\|880591_881245_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187643
NZ_CP041066.1\|WP_013055158.1\|883564_884659_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
NZ_CP041066.1\|WP_013055155.1\|881720_881876_-\|small,-acid-soluble-spore-protein-K	unknown	unknown	gnl\|CDD\|285399
NZ_CP041066.1\|WP_013055162.1\|886364_886625_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372951
NZ_CP041066.1\|WP_098278440.1\|878492_879395_-\|TIGR01777-family-protein	unknown	unknown	gnl\|CDD\|273800
NZ_CP041066.1\|WP_013055156.1\|882011_882281_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379438
NZ_CP041066.1\|WP_013055154.1\|881327_881642_+\|YfhH-family-protein	unknown	unknown	gnl\|CDD\|378063
NZ_CP041066.1\|WP_013055170.1\|895221_895614_+\|two-pore-domain-potassium-channel-family-protein	unknown	unknown	unknown
NZ_CP041066.1\|WP_013055160.1\|885034_885784_+\|enoyl-[acyl-carrier-protein]-reductase-FabL	unknown	unknown	gnl\|CDD\|236145
NZ_CP041066.1\|WP_025752758.1\|884693_884918_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041066.1\|WP_013055166.1\|891035_892334_-\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|183493
NZ_CP041066.1\|WP_013055171.1\|895683_896154_+\|thioredoxin-dependent-thiol-peroxidase	unknown	unknown	gnl\|CDD\|224146
NZ_CP041066.1\|WP_013055169.1\|894343_895129_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226218

Protein	Function_ID	Function_description	E-value
NZ_CP041066.1\|WP_098278441.1\|879491_880301_+\|recombination-regulator-RecX	gnl\|CDD\|237619	PRK14135, recX, recombination regulator RecX; Provisional.	9.48354e-120
NZ_CP041066.1\|WP_013055167.1\|892536_893550_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213234	cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA. NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.	1.65462e-121
NZ_CP041066.1\|WP_013055163.1\|886820_887357_+\|DUF402-domain-containing-protein	gnl\|CDD\|184219	PRK13662, PRK13662, hypothetical protein; Provisional.	2.65481e-127
NZ_CP041066.1\|WP_013055168.1\|893542_894334_+\|daunorubicin-ABC-transporter-permease	gnl\|CDD\|226953	COG4587, COG4587, ABC-type uncharacterized transport system, permease component [General function prediction only].	3.15486e-29
NZ_CP041066.1\|WP_013055165.1\|889313_890402_-\|aromatic-acid-exporter-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	6.35009e-68
NZ_CP041066.1\|WP_029324552.1\|882344_883325_-\|metal-dependent-hydrolase	gnl\|CDD\|377294	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase. YdjM is a family of putative LexA-binding proteins. Members are predicted to be membrane-bound metal-dependent hydrolases that may be acting as phospholipases. It is a member of the SOS network, that rescues cells from UV and other DNA-damage. Expression of YdjM is regulated by LexA.	7.98055e-35
NZ_CP041066.1\|WP_013081549.1\|887526_889278_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP041066.1\|WP_013055153.1\|880591_881245_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187643	cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR. These proteins include members identified as KDSR, ribitol type dehydrogenase, and others. The group shows strong conservation of the active site tetrad and glycine rich NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.27055e-55
NZ_CP041066.1\|WP_013055158.1\|883564_884659_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	5.34285e-150
NZ_CP041066.1\|WP_013055155.1\|881720_881876_-\|small,-acid-soluble-spore-protein-K	gnl\|CDD\|285399	pfam08176, SspK, Small acid-soluble spore protein K family. This family consists of the small acid-soluble spore proteins (SASP) belonging to the K type (sspK). The sspK are unique to the spores of Bacillus subtilis and are expressed only in the forespore compartment of sporulating cells of this organism. The sspK gene is monocistronic and transcription is primarily by the RNA polymerase with the forespore-specific sigma factor, sigma-G. Mutation deleting sspK results in loss of SspK from the spore but had no discernible effect on sporulation, spore properties or spore germination.	2.82664e-17
NZ_CP041066.1\|WP_013055162.1\|886364_886625_+\|hypothetical-protein	gnl\|CDD\|372951	pfam14182, YgaB, YgaB-like protein. The YgaB-like protein family includes the B. subtilis YgaB protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length.	1.26565e-19
NZ_CP041066.1\|WP_098278440.1\|878492_879395_-\|TIGR01777-family-protein	gnl\|CDD\|273800	TIGR01777, Hypothetical_UPF0105_protein_Rv2216/MT2273/Mb2239., TIGR01777 family protein. This model represents a clade of proteins of unknown function including the E. coli yfcH protein. [Hypothetical proteins, Conserved].	9.92903e-140
NZ_CP041066.1\|WP_013055156.1\|882011_882281_+\|hypothetical-protein	gnl\|CDD\|379438	pfam14043, WVELL, WVELL protein. This family includes the B. subtilis YfjH protein, which is functionally uncharacterized. This is not a homolog of E. coli YfjH, a synonym for IscX, which belongs to pfam04384. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length and contain a highly conserved WVELL motif.	7.28774e-43
NZ_CP041066.1\|WP_013055154.1\|881327_881642_+\|YfhH-family-protein	gnl\|CDD\|378063	pfam08838, DUF1811, Protein of unknown function (DUF1811). This is a bacterial family of uncharacterized proteins. Some of the proteins are annotated as being transcriptional regulators. The structure of one of the proteins in this family has revealed a beta-barrel like structure with helix-turn-helix like motif.	5.92623e-60
NZ_CP041066.1\|WP_013055160.1\|885034_885784_+\|enoyl-[acyl-carrier-protein]-reductase-FabL	gnl\|CDD\|236145	PRK08063, PRK08063, enoyl-[acyl-carrier-protein] reductase FabL.	1.44845e-172
NZ_CP041066.1\|WP_013055166.1\|891035_892334_-\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|183493	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional.	0
NZ_CP041066.1\|WP_013055171.1\|895683_896154_+\|thioredoxin-dependent-thiol-peroxidase	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	5.31486e-80
NZ_CP041066.1\|WP_013055169.1\|894343_895129_+\|ABC-transporter-permease	gnl\|CDD\|226218	COG3694, COG3694, ABC-type uncharacterized transport system, permease component [General function prediction only].	1.74767e-45

>NZ_CP041066.1|WP_013055160.1|885034_885784_+|enoyl-[acyl-carrier-protein]-reductase-FabL
MSQKVALVTGSSRGIGKEIALRLAKEGYDIVLNYARSKSAAQEVAEEIKALGREALVVKANVGKVEKIKEMFEQIDEVFGRLDVFVSNAASGVLRPIMELEETHWNWTMDINSKGYLFCAQEAAKRMEKVGGGKIVTISSLGSIRYLENYTTVGVSKAAVEALTRYLAVELAPKNIVVNAVSGGAVDTEALKHFPNRDELLDDARKHTPAGRMVEPKDMVDAVMFLVSDQANMICGQTLIIDGGRSLLM
>NZ_CP041066.1|WP_025752758.1|884693_884918_-|hypothetical-protein
MYVGRDMTALSMISKSEWKDSELAFFHHSLQQITPYLNAEGQSIHQQIIKEIEARGGLQRQEADYTHGTHVSYD
>NZ_CP041066.1|WP_013055158.1|883564_884659_+|A/G-specific-adenine-glycosylase
MKQSKDIVQNFDIRAFQDDLISWFEQEQRILPWRQDQDPYKVWVSEIMLQQTRVDTVIPYFNNFISKFPTIKDLAYANEDDVLKAWEGLGYYSRARNLQTAVREVHEQYGGEVPNTPAEISKLKGVGPYTTGAILSIAYGVPQPAVDGNVMRVLSRILSVWDDIAKPKTRKLFEDIVHEIISKDNPSYFNQGMMELGAIVCTPTSPSCLLCPVREHCRAFEEGVQNELPVKSKKKAPRALQLAAAVIRDEEGNYLIHKRPSKGLLANLWEFPNIEVDLSIAPDHQQLHAFIQNEYGADIKIHAPFTTIQHVFSHIVWNITVYEAELISDISALKNLKVVSEKDLEQYAFPVSHQKILKEYLLVK
>NZ_CP041066.1|WP_029324552.1|882344_883325_-|metal-dependent-hydrolase
MDTGTHIAMGIALGGLATLDPTVSANTATLDAVMIGVMAGSLAPDLDTVLKLRNNAQYIRNHRGITHSIPAVILWPLLIVLILSLLLPGANLLHLWMWTFAGVIIHVFVDIFNAYGTQALRPFTNKWIALGVINTFDYVIFSAHVLAIIIWFAGAEPGPTFITLYVLLAFYYGLRFYMRHQIAKKLRKQFPDVIKLNISPTMRFTHWHLAVTTEKYFHVGRAIGEEIFIYDTFDKVPIPESAVIEVAKKDENLSAFLSFSPIYRWELDEYNDHIEVRFIDLRYRSKDYYPFVAVVQLDYDLNIICSYTGWIFSEKKLRKKLDYLPH
>NZ_CP041066.1|WP_013055156.1|882011_882281_+|hypothetical-protein
MNDIFERLTNQLLNKNSSLSYAQARTWVELFWEDFESSYAKAGYDYKGKEATEKVVTMYINSYGDKLHEIAVKNPKYQHLLNNDDYLKH
>NZ_CP041066.1|WP_013055155.1|881720_881876_-|small,-acid-soluble-spore-protein-K
MRNKAKDFPNQHHTKFEGEPRAKAEYASKRANGTINTHPQERMHASNEREE
>NZ_CP041066.1|WP_013055154.1|881327_881642_+|YfhH-family-protein
MSEKRYSDMTTYELQQEIGSLQEKARKAEQLGMVNEYAVLERKVTMARSYLLDPETFKAGEVYEIQGDPGSYFKIDYMNGVFAWGFRLGSPQNEEALPISMLKK
>NZ_CP041066.1|WP_013055153.1|880591_881245_-|SDR-family-NAD(P)-dependent-oxidoreductase
MKTVLITGGATGLGKELAKFYAKDYNVILAGRNQYKLKEAQHELGDNVYTMSVDITKYEEVGKSVEKLLVQHSVDILINNAGIGHFGPLTDYTKQAIDEVIDTNVKGTIFLTQALMPHLLTRPEPKVMNIISTAGLRGKANESVYVASKFGVRGFTESLKVEYKDTSLHVIAAYMGGMNTPFWDHNNHIKDKSRLRSASEIAEIIYKQQNDSEDILF
>NZ_CP041066.1|WP_098278441.1|879491_880301_+|recombination-regulator-RecX
MPVVTKITTQKNSGERYNVYLDYGKGEEFGFGVDENVLIKYDLKKGRELDEFELTEIQYADDEKKAYNLAITYLSYRMRSEKEVHDYLKKKEINSTIIQQVIQKLVSHRYLNDEEFAKAFVLTQMNTTSKGPNVIQRELKEKGISDSIITLSLCEYPEEQQIQTAVKLIEKLKGKYKKLSQVMMKQKMEQALAVKGYSFSIIQEAFQRTNTEKESDEAWEALQYQGMKAHRRFSKYEGWEYQQKIKQALYRKGFSIDQIQSFLDSIEEE
>NZ_CP041066.1|WP_098278440.1|878492_879395_-|TIGR01777-family-protein
MKIVIAGGTGFVGKALTKHFLTQKHYVYILTRNADKAARDPKLKYVEWMQENSQPEEHVEGADVFINLAGVSLNSGRWTDERKKAIVESRLSSTQEILRIMAALPEKPSLYVNASAVGYYGTSTTETFTEASPSTGTDFLAETVKKWENEALKAMELNIRTVLTRFGVILGKDGGALPSTALPYKLFAGGTVGSGEQWMSWVHLQDVVKIIDYCIHTEQIEGPVNVTAPNPVQMKEFGKTIGKVLNRPHWMPVPSFGLQLLMGEMSMIILKGQRVLPEKLIQQNYIFTYTVLEDALRDLL
>NZ_CP041066.1|WP_013055162.1|886364_886625_+|hypothetical-protein
MKKFDELVTQQLETMDQLLFLQSEIERCQEIEGELIKLHEEAKLHSVQGEISEMKLKLKEIQLTFEAQTEDIIRTYKSEGACSTLA
>NZ_CP041066.1|WP_013055163.1|886820_887357_+|DUF402-domain-containing-protein
MGIPVEGETIQIHSYKHNGHIHRVWDRTTVLKATNNLVIGGNDRTVVTESDGRTWVTREPAICYFHAQQWFNVIGMIREDGIYYYCNISSPFIYDDNEALKYIDYDLDIKVYPDMTYTLLDEDEYEKHRKEMNYPEVIDRILHNHVEELKGWIRQRKGPFAPDFIDIWYERFLTYRHS
>NZ_CP041066.1|WP_013081549.1|887526_889278_+|ABC-transporter-ATP-binding-protein
MGSIRRYMKFVQPYKWQIVGTVLIGIIKFAIPLLIPLLLKYVLDDIVNGHGMSSSEKVHKMVTIMGISFVIFLVLRPPIEYYRQYYAQWVSSKVLYDIRDQLFSHIQKLSLRYYANTRAGEVISRVINDVEQTKNFVITGLMNVWLDMMTIVIAIVIMFTMNVPLTLVSIILLPVYAFSVKYFYSRLRHLTRVRSQALAEVQGHLHERVQGISVIRSFAIEPHEQKQFDKQNSNFLQKAINHTNWNAKTFAVVNTITDLAPLIVITFAGYQVITESLSVGTMVAFVAYIDRLYNPLRRLVNSSTTLTQSVASMDRVFEFIDEEYDITDKKDAKECTELHGKVQFEHVSFAYEEEEKPVIHDINLDVEKGKSVAFVGMSGGGKSTLISLIPRFYDVTEGKILIDDIDIKTYKVRSLRDKIGIVLQDTVLFSDTVKNNILLGKPGATDEEVIAAAKAANAHDFIMNLPEGYDTKVGERGMKLSGGQKQRISISRVFLKNPAILIFDEATSALDLESEHYIQEALAELAKDRTTFIVAHRLSTITHVDEIVLLENGRVVERGSHEELIKKKGHYYQLFNVQQLDTI
>NZ_CP041066.1|WP_013055165.1|889313_890402_-|aromatic-acid-exporter-family-protein
MKLGARILKTGIAITLSLLLGEFLSLPSPIFAAIAAVFAIQPSIYRSYLTILEQIQANVIGAASAVCFGLIFGTHPIIIGFTAVVVIAVNLKLRINNTIGLALVTVIAIMENPGDNFVEYALIRFGTVLLGVFSAFIVNLIFIPPKYETKLYYKIVSTTEEIIKWIRMNLYHASEHTLLKEDIEKMKDNVAKMNQLFDFYKEERTYSTKKRFVKSRKLVLFRQMITVTTRALTTLKLLHRVENDLQVMPQQFQDLIKSEVECLLMYHEQVLLKFIGKLRVQPTTTVPNEACVGKRALIDKFMQYKIYDNDEENKVIYHIFPLISVIIEYSEELEHLDKLIDTFQNYHKDDNSFDINHQRQED
>NZ_CP041066.1|WP_013055166.1|891035_892334_-|glutamate-1-semialdehyde-2,1-aminomutase
MQFTKSEQLHAEALEHIVGGVNSPSRSYKAVGGGAPIAMEKASGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITKAAETGVLYGTPTAHEVTFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAYTGRDKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIANEVITVPFNDIEPYKEALEKWGDQIAAVLVEPIVGNFGIVEPEPGFLEQVNELTHEAGALVIYDEVITAFRFMYGGAQDLLGVKPDLTAFGKIIGGGLPIGAYGGKKEIMEKVAPLGPAYQAGTMAGNPASILSGIACLEVLKQEGVYEQLDKLGAMLEEGILKHARTYNMPITINRLKGALTVYFTTETVKNYEQAENTDGELFARFFKLMLHQGVNLAPSKYEAWFLTTAHTEQDIAETLEAVEKAFKQLSEER
>NZ_CP041066.1|WP_013055167.1|892536_893550_+|ATP-binding-cassette-domain-containing-protein
MKNAIEVNQLRKEFKAYSSRSGLKGAFRDLFTRNYRVMKAVNDISFTVKQGEMVGYIGENGAGKSTTIKMLTGILTPTSGDITVNGMNPHKEREKFAQTIGVVFGQRSQLWWDIAVQESFRLLKKVYKVSDEDYNAHMEHVIQTLDIGPLLDKPVRKLSLGQRMRCELAAALIHNPPLLFLDEPTIGLDVLVKLKIRQFLKEINEKYNTTILLTTHDLADIEALCERVVMLDEGSIIYDGSLQKLRSNWGDLKQVTFEFGTAPNKEQLKLLTQGMPVNWIEGDQKYLWTAQLQNKGDLMSQLIAKVVAKHEISDINIEEISTEEIIRNIYEEGVVNG
>NZ_CP041066.1|WP_013055168.1|893542_894334_+|daunorubicin-ABC-transporter-permease
MDKYIEMIRIRFLMMLAYRTNYYSGILIYAINIGAYYFLWSAIYGGKENIQGLSITQMTTYVAVSWMARAFYFNNIDREMAMEIKDGKVAVELIKPYSYLGMKTMQGLGEGIFRLLFFSVPGMIIVAFLFPVQFSANAATWLYFGLSLIFSFIINTQINLLTGITTFFLFNNDGLIRAKRVVIDLFSGLLLPISFYPLWAQHIMSYFPFQAISYIPSMIFTNGFKGQEVINALITQAVWSGLLFIPIACLWNIAKKKMVIQGG
>NZ_CP041066.1|WP_013055169.1|894343_895129_+|ABC-transporter-permease
MFYFSIFFQYISQYMKTRLQYRTDMVVEIISDLLFQTVNLIFILVVFGHTQSLHGWSREEIIFIYGFFLVPFAIFSSFFNIWDFNERYIVKGEMDRILTRPIHSLFQVILERMELESLFGGITGIAVMAYAASSLHLHFQWYDVFIFLLFILGGALVYAGIFIALASIGFWSDARTSIMPTIYNIGNYGRYPVDIYNNVIRYVLTWILPFAFVGVYPAAYFLGRSEWYGYAFLTPVMGIVFFVISIFLWNTGVKKYRGAGN
>NZ_CP041066.1|WP_013055170.1|895221_895614_+|two-pore-domain-potassium-channel-family-protein
MVVFLILVIIVFVIGSMKFLFEKELGEFHFFSIGHFFVLFYSYITVLLGFSLIYTVCEMGSIPVLSGGFEHEGHYFYTLFNSMYFSAATLFSVGYGDMYPVGIGKLFATFEAFIGYIMPAIFVMRTVTRT
>NZ_CP041066.1|WP_013055171.1|895683_896154_+|thioredoxin-dependent-thiol-peroxidase
MTAVVGEKAPDFVLMSTNGEQVSLASMKGKNVVLYFYPKDMTPGCTTEACDFRDQHENFEELDAVILGVSPDPIDKHHKFIDKHGLPFLLLADEDHSVAEEYGVWTLKKNFGKEYMGIERSTFIINKEGMLVKEYRKVRVKGHVEEALSFIKEKMA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP041066_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041066_2

910839-911161

Orphan

Consensus_repeat	Method
NNCNNTATATTATGAAGN	CRT
TATATTATGAAGAAACTTT	PILER-CR

5 spacers

The CRISPR arrays of NZ_CP041066_2

>merge|NZ_CP041066|2|910839-911161|CRT,PILER-CR
TACACTAATATATGAAGGATACTTTTTATAAAGTTTTTTCACCGTTTATGCAAATAAAAGGGGTCGTTCCTACACTATATTATGAAGAAACTTTTTCGTAGTAATATTGGTAAAACAGGTATGATAAACGCCTTATATTATGAAGAAACTTTTTCTACGTTTTATTAACATTTCATATGCCTTAAACGCCTTATATTATGAAGAGTAAAAAAGTTTACCGTAATATGCATAAAACAGGTACGCTTCCTACACTATATTATGAAGAAACTTTTTCGTAGCGATATTGCCCAAATAGGGTGCTTACCCGCCTTATATTATGAAGG

>NZ_CP041066|2|1|910839-911161|CRT
TACACTAATATATGAAGG	ATACTTTTTATAAAGTTTTTTCACCGTTTATGCAAATAAAAGGGGTCGTTCC
TACACTATATTATGAAGA	AACTTTTTCGTAGTAATATTGGTAAAACAGGTATGATAAA
CGCCTTATATTATGAAGA	AACTTTTTCTACGTTTTATTAACATTTCATATGCCTTAAA
CGCCTTATATTATGAAGA	GTAAAAAAGTTTACCGTAATATGCATAAAACAGGTACGCTTCC
TACACTATATTATGAAGA	AACTTTTTCGTAGCGATATTGCCCAAATAGGGTGCTTACC
CGCCTTATATTATGAAGG

>NZ_CP041066|2|1|910914-911109|PILER-CR
TATATTATGAAGAAACTTT	TTCGTAGTAATATTGGTAAAACAGGTATGATAAACGCCT
TATATTATGAAGAAACTTT	TTCTACGTTTTATTAACATTTCATATGCCTTAAACGCCT
TATATTATGAAGAGTAAAA	AAGTTTACCGTAATATGCATAAAACAGGTACGCTTCCTACACTATATT
ATGAAGAAACTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041066.1\|WP_140456594.1\|913086_913419_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041066.1\|WP_140456590.1\|907220_907709_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041066.1\|WP_140456592.1\|909731_909995_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225495
NZ_CP041066.1\|WP_013055170.1\|895221_895614_+\|two-pore-domain-potassium-channel-family-protein	unknown	unknown	unknown
NZ_CP041066.1\|WP_140456599.1\|915600_916041_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372433
NZ_CP041066.1\|WP_140456597.1\|914045_914783_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041066.1\|WP_140456593.1\|912140_913085_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041066.1\|WP_013055173.1\|896865_897225_-\|YgzB-family-protein	unknown	unknown	gnl\|CDD\|371346
NZ_CP041066.1\|WP_140456601.1\|916550_916853_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041066.1\|WP_013055174.1\|897446_898313_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379641
NZ_CP041066.1\|WP_140456589.1\|906392_907190_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379352
NZ_CP041066.1\|WP_140456595.1\|913504_913750_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274805
NZ_CP041066.1\|WP_140456591.1\|908865_909708_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|198390
NZ_CP041066.1\|WP_140456602.1\|917012_917594_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041066.1\|WP_013055172.1\|896408_896843_+\|peroxide-responsive-transcriptional-repressor-PerR	unknown	unknown	gnl\|CDD\|223806
NZ_CP041066.1\|WP_140456596.1\|913739_914012_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041066.1\|WP_140456588.1\|905237_906215_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|227308
NZ_CP041066.1\|WP_140456598.1\|914782_915274_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041066.1\|WP_140456600.1\|916109_916490_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368785
NZ_CP041066.1\|WP_013055171.1\|895683_896154_+\|thioredoxin-dependent-thiol-peroxidase	unknown	unknown	gnl\|CDD\|224146

Protein	Function_ID	Function_description	E-value
NZ_CP041066.1\|WP_140456591.1\|908865_909708_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|198390	cd10443, GIY-YIG_HE_Tlr8p_PBC-V_like, GIY-YIG domain of uncharacterized hypothetical protein found in phycodnavirus PBCV-1 DNA virus, T. thermophila Tlr element eoncoding protein Tlr8p, and similar proteins found in bacteria. The family includes a group of diverse uncharacterized hypothetical proteins with a GIY-YIG domain that shows statistically significant similarity to the N-terminal catalytic domains of GIY-YIG family of intron-encoded homing endonuclease I-TevI. Similar to I-TevI, family members from phycodnavirus PBCV-1 DNA virus have nuclease-associated modular DNA-binding domains (NUMODs) and a helix-turn-helix (HTH) domain C-terminally fused to the GIY-YIG domain, which suggests that these PBCV-1 acquired the I-TevI-like homing endonucleases from phages by horizontal gene transfer. This family also includes proteins that appear to connect homing endonucleases with Penelope elements, such as Tetrahymena thermophila Tlr element encoding protein Tlr8p that possess additional N-terminal and central structural regions, followed by a putative superfamily 1 helicase domain and I-TevI-like GIY-YIG domain, but lacks the NUMOD domains and HTH domain. It is suggested that the Tlr8p element could have acquired its GIY-YIG domain w ithin the nucleus of the ciliate cell infected by the Phycodnavirus. Some family members only contain a standalone GIY-YIG domain and their biological functions are unclear.	6.13123e-12
NZ_CP041066.1\|WP_140456592.1\|909731_909995_-\|hypothetical-protein	gnl\|CDD\|225495	COG2944, COG2944, Predicted transcriptional regulator [Transcription].	0.000193986
NZ_CP041066.1\|WP_013055172.1\|896408_896843_+\|peroxide-responsive-transcriptional-repressor-PerR	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	2.22949e-56
NZ_CP041066.1\|WP_013055171.1\|895683_896154_+\|thioredoxin-dependent-thiol-peroxidase	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	5.31486e-80
NZ_CP041066.1\|WP_140456599.1\|915600_916041_+\|hypothetical-protein	gnl\|CDD\|372433	pfam13022, HTH_Tnp_1_2, Helix-turn-helix of insertion element transposase. This is a family of largely phage proteins which are likely to be a helix-turn-helix insertion elements.	1.18722e-16
NZ_CP041066.1\|WP_140456588.1\|905237_906215_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|227308	COG4974, XerD, Site-specific recombinase XerD [DNA replication, recombination, and repair].	2.58096e-52
NZ_CP041066.1\|WP_013055173.1\|896865_897225_-\|YgzB-family-protein	gnl\|CDD\|371346	pfam11023, DUF2614, Zinc-ribbon containing domain. This is a family of proteins conserved in the Bacillaceae family. Some members are annotated as being protein YgzB. The function is not known.	1.048e-74
NZ_CP041066.1\|WP_140456600.1\|916109_916490_+\|hypothetical-protein	gnl\|CDD\|368785	pfam06199, Phage_tail_2, Phage tail tube protein. characterized members are major tail tube proteins from various phages, including lactococcal temperate bacteriophage TP901-1.	1.91829e-18
NZ_CP041066.1\|WP_013055174.1\|897446_898313_+\|hypothetical-protein	gnl\|CDD\|379641	pfam14540, NTF-like, Nucleotidyltransferase-like. Structural comparisons with Structure 1kny indicate that this N-terminal domain resembles a nucleotidyltransferase fold.	2.51934e-48
NZ_CP041066.1\|WP_140456589.1\|906392_907190_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379352	pfam13730, HTH_36, Helix-turn-helix domain.	7.72798e-06
NZ_CP041066.1\|WP_140456595.1\|913504_913750_+\|hypothetical-protein	gnl\|CDD\|274805	TIGR03830, transcriptional_regulator_XRE_family, putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.	0.00137483

>NZ_CP041066.1|WP_140456592.1|909731_909995_-|hypothetical-protein
MQTIYDFTAKEITQLRKAIGFQQPEFAKLLSISTIYQKNIEYGKNRVSNAYLKRIDVNITQGKSEYISAVKFLVEESDRLKQVLSCL
>NZ_CP041066.1|WP_140456591.1|908865_909708_-|GIY-YIG-nuclease-family-protein
MEQEQQQQAVYGRIYELYCKEDDRYYIGGTSDTLEGRMKTHKIDLNKGNVSPLYQAMRKHGVDAFEMREIATASNLTALKLRESFYTLAYKLLDRKLYNVRDGGGSYSEDARAKLSAGMVAKWQDTEFRLKQLQAKQNPATKAKVSESMKLRWQDEDYRRRTTVMQMVRGMASRAETKYKKKLRSIELKGKANGNRKITHENAILILLTEGSITKIAGKFGVHHAQISRVRNGNRYPEIHEFITSKTPAIPRIPLDNIEEYRPLAEELLKEYVEIALRRR
>NZ_CP041066.1|WP_140456590.1|907220_907709_+|hypothetical-protein
MNIRKVGVSTVAVAGIITVGMFVGVGNKPVSPVKVEPTQVQAQEVDKSDTNNTVLHNMPRDNAPRLGINALIAEAHFDLNTYKEYNGNDPQYWSVASETLSAVADDIKLELRYVDDKALKADLVRFTNLVTVIQDKHDRQALLQAHSLIHALDVKYNNYRYK
>NZ_CP041066.1|WP_140456589.1|906392_907190_+|helix-turn-helix-domain-containing-protein
MYQEIAKKYRTFDSKEALNYSVRKHLYHNKHLMTPTAIAVLKVLSKHAVKFAGVAYLKLATIATKVDKHRNTVIKAIKLLCELGIIKKELQYREVKGGNGSNFYIIQPFKEANTANKKSAKKAENNSAGLLRNEAEKPSIASVDSPKTENETVISENYNTKIINKRSKSAYATLKQYVNAYIGEDKKAVNEFYKIYRCHVMHIENSYDKDTLLNIGVQAVKTAFVATKGKRIKNIYGYFNGVMDKLLDRLFYTETAGYVTADMEF
>NZ_CP041066.1|WP_140456588.1|905237_906215_+|tyrosine-type-recombinase/integrase
MARRKNDLSTDELKQLSGVLPASNFTLAELIEIFLDDCAVRNLREHTVKFYKNELATFIRLLEAQGIELNTDKISAEVIKTNVIKAMQAQGIKPVSINTRLRAVRAFFNFLYKQKYIKRNPMQQVQLLRHRKEVIETLTVDQINKLLNACDLRTFVGVRDYTIILTFVETGVRANELVGINVDDINFSSGFIRIRNAKSYRERLVPIQKKMKEQLKKYLAVRGQLNTDSLFVTLDSNPLSKRQMQSRISYYGDMANIKGVRVSCHTLRHTFAKLCVVNGANVFQLQAILGHTTLDMTKTYVNLFSSDVAEGHKQFSPLQNIRNFR
>NZ_CP041066.1|WP_013055174.1|897446_898313_+|hypothetical-protein
MEDVLRPIYQERASNKDTLGILLIEKKKSESPVTDNLDAILFIVTKTTETSLFIKQYEYENERAALYMASEQQMSEWIMNGTNRRIIDWILNGKVLFDRNEYMENLKKRLIDFPREDRTKRIGVEFAKLIRRFKEGKDFYASNHYLDAFNHVIHALHHLARLSVLENGFHPEVTVWNQVKKIEPEIHRLYEELIISQEEVSKRLELLFLASEFLVNKKTELGAKHLVHIMKSEKQEWTFNELVHHPEIRPYAIDLGILLEFLIEKDIIMVKKVETKGKSLYHRHYVAK
>NZ_CP041066.1|WP_013055173.1|896865_897225_-|YgzB-family-protein
MGIKYSNKINKIRTFALSLIFVGFIVMYGGIFFRSSVWLMTIFMLLGLLCIVASTGVYFWIGMLSTKAVQVTCPTCQKQTKMLGRVDMCMYCNEPLTLDQSLEGKQFDEKYNRKKQKES
>NZ_CP041066.1|WP_013055172.1|896408_896843_+|peroxide-responsive-transcriptional-repressor-PerR
MSNHLQEALETLKGTGVRITPQRHAILEYLINSMTHPTADDIYKALEGKFPNMSVATVYNNLRVFREVGIVKELTYGDASSRFDYVTTEHYHVICESCGKIVDFHYPGLDEVEKLAAHITDFDISHHRMEIYGTCPDCTAKKAH
>NZ_CP041066.1|WP_013055171.1|895683_896154_+|thioredoxin-dependent-thiol-peroxidase
MTAVVGEKAPDFVLMSTNGEQVSLASMKGKNVVLYFYPKDMTPGCTTEACDFRDQHENFEELDAVILGVSPDPIDKHHKFIDKHGLPFLLLADEDHSVAEEYGVWTLKKNFGKEYMGIERSTFIINKEGMLVKEYRKVRVKGHVEEALSFIKEKMA
>NZ_CP041066.1|WP_013055170.1|895221_895614_+|two-pore-domain-potassium-channel-family-protein
MVVFLILVIIVFVIGSMKFLFEKELGEFHFFSIGHFFVLFYSYITVLLGFSLIYTVCEMGSIPVLSGGFEHEGHYFYTLFNSMYFSAATLFSVGYGDMYPVGIGKLFATFEAFIGYIMPAIFVMRTVTRT
>NZ_CP041066.1|WP_140456593.1|912140_913085_+|hypothetical-protein
MSFIEQMTEQELKKWREQSPTAKQETFELIENAVVIDITTGEEITDKVSVKPNLGSALPHQVQYKQREDEVAKYNAEQGGFVFTFYKLAERIDGDLTKADLARLLFLATYLSYESNQLKFDNGVAITKKQLPELLGLKERAFRTFYGTVTQLGILVDNGDKVVMSAEYFYKGSLPKTIKPNEIAYTRTYVNGIRELYKEYGATRKAGQLGLLYLVIPYIHFDTNILVSNPNERQHADIEALSLEEVAMLLGYDANKITRTLTGIVLGDEYVFMITQVGKEKNVVVNPRVHWRGTSVPSGTVDTLFQIKKRKGGN
>NZ_CP041066.1|WP_140456594.1|913086_913419_+|hypothetical-protein
MCNVADLTVCANVSNCIEEVFETTYHNVAKTHTLLEGAWIYCFSQGLKYFDFTEQQAQVYDAVGEQFYNNVIEAIANDDATGEKLYAVVQDFVHLFAYFIHDEKVITKTA
>NZ_CP041066.1|WP_140456595.1|913504_913750_+|hypothetical-protein
MKLTANEVKLIRNVYGFSRKQFAYFLNVEPNYIYLIETGRKPLSASLEAKILDKYIVDEFMLIAIKDVGNRIKQAGDKDAE
>NZ_CP041066.1|WP_140456596.1|913739_914012_+|hypothetical-protein
MPNKSYNVSVYQGNDFAYLAIADEAGVVIERKPNMYSDANGEVTVKTDAVAIDPLAQLKRNLISKIYGKKKTQVQIKEEYEKALEKALNK
>NZ_CP041066.1|WP_140456597.1|914045_914783_+|hypothetical-protein
MTKLYFTNEHDAGGNRYSAGNIYDIQDTHVQETLLAEGKAVKVDFPKLDTMTYTVNSLIERYKKSKETLERRFADIPSEREYQLEQLEEQLKADIAKAGEDYRIELTVLEKELAQEAVKSTLKTDEQALQFLDNEIARLSYSDDVVGDLKLLSIKVNGMNAEGKATVLANFGKLANVAGDNAEAKEVLKGILSTVKKVDNSSAIDLKLRQIQVLKTKDVTAPYHRMQLLKENRGKNPNEIVGGIL
>NZ_CP041066.1|WP_140456598.1|914782_915274_+|hypothetical-protein
MPEEFDINEQDRLSLIKELEEAKRKLSHYETIVQPLAERELNRIREEQVKAFRLDEAQRTVMAERLAEVGTEEAIISTAKEVAIALKVENKPKYVDPAINIRSTKWRTVSPYEKGRANAQRLIDEGKIAGVSRRGSEGVGGLRHSITQPKTNGLSGVINKFFG
>NZ_CP041066.1|WP_140456599.1|915600_916041_+|hypothetical-protein
MFTNSDIAKLEEQLRPNQLKAVNLMVESEFASADKKTLEEIAEECGVSRITLYQWRKNPIFNQLLKAYSSQHLSSYRALADAQLLKLIKGTSANGIPSIKSLELFYKLQQDLNGDKTVTLVSGANGALNHEDIEAELAELEAGLED
>NZ_CP041066.1|WP_140456600.1|916109_916490_+|hypothetical-protein
MAVRGADILILVNNVVVGGQQSATISESVETVETTNKLTNGFKEFEYGFGEWKISADGIYVKGDAGFTALKDAMRNKQKVTVRIQEEGVATEEGTALVTSRDLEGKYDDSATYSVELQGSGALTEL
>NZ_CP041066.1|WP_140456601.1|916550_916853_+|hypothetical-protein
MTKQVVITRKVNAKTNFTPTREFYSVLVDGKDPHVGAMPNTPLVDVVEAVLRRLKDVAIHNEEEAFDVAITTPVDISDVVKTFIKDKYELEPQFNSVVFS
>NZ_CP041066.1|WP_140456602.1|917012_917594_+|hypothetical-protein
MAKESKMLAGIKVTLELVKEGAYTIQNGELFNKSGVRLGRVGKDSGNVFYVVKGYHILAGRLMYAYYNGNTADVLREDSVITYLDGNKQNNRKGNVVQLPRKGMKEALKALRTGMCCPLVATAPTTATAPTTATAYTEVQLQARRIMELLLAGKTVKEVAMEYDIKTQKVRDIIRGKSSGKATADLRAEFDAM

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP041066_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041066_3

1492011-1492106

Orphan

Consensus_repeat	Method
TGTAACTATAATGGTTACAACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041066_3

>merge|NZ_CP041066|3|1492011-1492106|CRISPRCasFinder
TGTAACTATAATGGTTACAACAAGCTGAGAAGAATTAGCAGTGCTATAAAAGGCTCAAATTTTTTGTGTTTTATGTAACTATAATGGTTACAACGA

>NZ_CP041066|3|2|1492011-1492106|CRISPRCasFinder
TGTAACTATAATGGTTACAACAA	GCTGAGAAGAATTAGCAGTGCTATAAAAGGCTCAAATTTTTTGTGTTTTA
TGTAACTATAATGGTTACAACGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041066.1\|WP_140456637.1\|1487797_1489147_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NZ_CP041066.1\|WP_053486894.1\|1492932_1493919_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP041066.1\|WP_014461319.1\|1494531_1495074_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239313
NZ_CP041066.1\|WP_029324911.1\|1480715_1482467_-\|allophanate-hydrolase	unknown	unknown	gnl\|CDD\|236177
NZ_CP041066.1\|WP_029324914.1\|1486783_1487521_-\|urea-carboxylase-associated-family-protein	unknown	unknown	gnl\|CDD\|163257
NZ_CP041066.1\|WP_029324909.1\|1478047_1479496_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143467
NZ_CP041066.1\|WP_140456638.1\|1490130_1491459_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238618
NZ_CP041066.1\|WP_013055696.1\|1496764_1496911_+\|YvrJ-family-protein	unknown	unknown	gnl\|CDD\|378969
NZ_CP041066.1\|WP_029324910.1\|1479587_1480463_+\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NZ_CP041066.1\|WP_013055693.1\|1495191_1495635_+\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NZ_CP041066.1\|WP_013055689.1\|1491506_1491704_-\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_CP041066.1\|WP_140456636.1\|1482481_1486093_-\|urea-carboxylase	unknown	unknown	gnl\|CDD\|274264
NZ_CP041066.1\|WP_029324918.1\|1496160_1496772_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP041066.1\|WP_013055690.1\|1492127_1492760_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225462
NZ_CP041066.1\|WP_029324908.1\|1476940_1477897_+\|hydroxymethylglutaryl-CoA-lyase	unknown	unknown	gnl\|CDD\|163676
NZ_CP041066.1\|WP_013055701.1\|1499077_1499251_-\|twin-arginine-translocase-TatA/TatE-family-subunit	unknown	unknown	gnl\|CDD\|237837
NZ_CP041066.1\|WP_029324913.1\|1486109_1486763_-\|DUF1989-domain-containing-protein	unknown	unknown	gnl\|CDD\|132465
NZ_CP041066.1\|WP_013055697.1\|1496915_1497143_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184493
NZ_CP041066.1\|WP_055989280.1\|1495783_1495963_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041066.1\|WP_098660402.1\|1497624_1499049_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|226229

Protein	Function_ID	Function_description	E-value
NZ_CP041066.1\|WP_140456637.1\|1487797_1489147_-\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.66811e-40
NZ_CP041066.1\|WP_053486894.1\|1492932_1493919_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	6.17712e-65
NZ_CP041066.1\|WP_014461319.1\|1494531_1495074_+\|peroxiredoxin	gnl\|CDD\|239313	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric interface in atypical 2-cys PRX and PRX5) at the opposite end of the monomer to form the stable decameric (pentamer of dimers) structure.	1.34409e-107
NZ_CP041066.1\|WP_029324911.1\|1480715_1482467_-\|allophanate-hydrolase	gnl\|CDD\|236177	PRK08186, PRK08186, allophanate hydrolase; Provisional.	0
NZ_CP041066.1\|WP_029324914.1\|1486783_1487521_-\|urea-carboxylase-associated-family-protein	gnl\|CDD\|163257	TIGR03425, urea_degr_2, urea carboxylase-associated protein 2. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.	4.98749e-113
NZ_CP041066.1\|WP_029324909.1\|1478047_1479496_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143467	cd07149, ALDH_y4uC, Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (ORF name y4uC) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.	0
NZ_CP041066.1\|WP_140456638.1\|1490130_1491459_+\|amidohydrolase-family-protein	gnl\|CDD\|238618	cd01293, Bact_CD, Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.	1.38657e-110
NZ_CP041066.1\|WP_013055696.1\|1496764_1496911_+\|YvrJ-family-protein	gnl\|CDD\|378969	pfam12841, YvrJ, YvrJ protein family. This family of short proteins are related to B. subtilis YvrJ protein. None of the members of this family have been functionally characterized.	8.32281e-10
NZ_CP041066.1\|WP_029324910.1\|1479587_1480463_+\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	7.08418e-14
NZ_CP041066.1\|WP_013055693.1\|1495191_1495635_+\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	5.95691e-24
NZ_CP041066.1\|WP_013055689.1\|1491506_1491704_-\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	8.42897e-30
NZ_CP041066.1\|WP_140456636.1\|1482481_1486093_-\|urea-carboxylase	gnl\|CDD\|274264	TIGR02712, Includes:_Allophanate_hydrolase, urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea. [Central intermediary metabolism, Nitrogen metabolism].	0
NZ_CP041066.1\|WP_029324918.1\|1496160_1496772_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	8.45142e-11
NZ_CP041066.1\|WP_013055690.1\|1492127_1492760_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|225462	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only].	1.6882e-84
NZ_CP041066.1\|WP_029324908.1\|1476940_1477897_+\|hydroxymethylglutaryl-CoA-lyase	gnl\|CDD\|163676	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".	4.56408e-152
NZ_CP041066.1\|WP_013055701.1\|1499077_1499251_-\|twin-arginine-translocase-TatA/TatE-family-subunit	gnl\|CDD\|237837	PRK14861, tatA, twin arginine translocase protein A; Provisional.	4.96868e-23
NZ_CP041066.1\|WP_029324913.1\|1486109_1486763_-\|DUF1989-domain-containing-protein	gnl\|CDD\|132465	TIGR03424, urea_degr_1, urea carboxylase-associated protein 1. A number of bacteria degrade urea as a nitrogen source by the urea carboxylase/allophanate hydrolase pathway, which uses biotin and consumes ATP, rather than my means of the nickel-dependent enzyme urease. This model represents one of a pair of homologous, tandem uncharacterized genes found together with the urea carboxylase and allophanate hydrolase genes.	1.22432e-119
NZ_CP041066.1\|WP_013055697.1\|1496915_1497143_+\|hypothetical-protein	gnl\|CDD\|184493	PRK14082, PRK14082, hypothetical protein; Provisional.	2.40722e-08
NZ_CP041066.1\|WP_098660402.1\|1497624_1499049_+\|diguanylate-cyclase	gnl\|CDD\|226229	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].	7.06771e-59

>NZ_CP041066.1|WP_013055689.1|1491506_1491704_-|cold-shock-protein
MVQGKVKWFNAEKGFGFIEVEGQDDVFVHFSAIQGEGFKSLEEGQEVTFEIEDGARGPQAANVQK
>NZ_CP041066.1|WP_140456638.1|1490130_1491459_+|amidohydrolase-family-protein
MLLHLINVRLPIMHDHALFEVKISNGMYTSIVLQNGYLEGDEFFPLHAAVLGKETSLDGQGRVLLPGFVDMHMHLDKAHSLPQVPNISGTLQEAIKNYSSSLPAFPEEEIKQRMFKTALQALANGTTTIRTHIDFDCSMEEDSLFRSLQAAVEVRDELSPYMDMQVVPLFSNLDIDDMYKMNKIERAFDLEIDAIGGCPHLARNPEKEIDALFSLAQAYNKPLDLHVDESDDPSVDTIINIAHRTIELNMEGKVVVGHLCSLAGMTDAKVKEILNLLKQAKIGVVTLPASNLYLQGREDKGIVRRGVTRIRDIQKAAIPIATASDNVNDPFHPFGKADLLQVGLLTAYAAHMGSPDDQRQLLRMITSIPARLIGKEKYGVEEGNEANFVLLNVQSVQEIWTELPETRFVFNKHRWLSVKETHQRLADTNLTNLWQENQILIG
>NZ_CP041066.1|WP_140456637.1|1487797_1489147_-|amino-acid-permease
MNNQPALSKSLKVYQIVFLGLAWMTPMIFFTVYGVAYDATGGQMVLAYLIAFLAIFFTAYSYSRMVKAYPIAGSAYTYTKKAIHPRLGFLVGWALLLDYIFSPIIAILTFGIFMHTEFPSIPVYVWVIVMNIILALVNIVGIKSVARISGISVVVQILFISLFCLFIIKDIATGQASSSTLFSLHPFLASDVPFTTIFSGAALICFCFLGFDAVTTMAEETIQPERTIPKAIFLIVCIAAVMYIAISYFTQIAYPGFTFTNPDNAAYTLVKLVGGNLLSSLFITVLIIATFTQGVSSVTSVTRFLYALGRESVLPQKVFSYIHPTFKTPVVNILLVTTFSFLGMFIDLNTAVTFVSFGALTAFTFVNLSVIVHFYIKLKKRSFTETILYLIFPLIGAAFIGWLLTLLNKDTLLIGVAWLTIGFLYLFVKSRLSAPFVKRDHSKVTVSEK
>NZ_CP041066.1|WP_029324914.1|1486783_1487521_-|urea-carboxylase-associated-family-protein
MSYIWKQTIPAGGKWSGRIGRGKSVTFTAQESGANVSVLLYNAYDLTERYNMPDTLKAQHTAHLTKGHVLMSDNGRAFASITADTTGWHDTISGYTTRSLTHQKYGASTYQESRNEWRRNGEENFSMELLRNGLTTRDLVPNLNIFSKVYCDEEGNMNFVSSHCKKGDFITLRTEMDLLFLLSNTPNPLDPSGTYPSVPIEITVDEAAPLSSDDYCLNFRPENKRAFENTWSYDLLLGNKTLSTI
>NZ_CP041066.1|WP_029324913.1|1486109_1486763_-|DUF1989-domain-containing-protein
MAVFNRVESNRKIENAIYDETVLAGDGWMHELKPGQTLRIIDVEGNQAADTLFFDAENPEDHYSAVSTIANQGNIYLSTGTVLLSQSGKELVKIVADTCGRHDTLGGACSAQSNTVRYAHDTLPMHNCRDTFMLQLSKYDSRYTKRDLAPNVNFFMNVPVTPSGGLTFNDGVSAPGYYVEMEAINPTLVLISNCPQLNNPCNDYNPTPIRLVIWDSL
>NZ_CP041066.1|WP_140456636.1|1482481_1486093_-|urea-carboxylase
MFTKVLIANRGAIAVRIERTLRNLGVKSVAVYTEADQDSLHVDDADEAILIGSGPVKESYLNEDLILDIAKKTGAEAIHPGYGFLSENAEFARRCRAEGIVFIGPTPQQMEVFGLKHSAREIAQKADVPLLPGTPLITDVSEAICAAEKIGYPVMLKSTAGGGGIGMRVCQDEKALQAAFDSVCHLAQTNFKNSGVFLEKYIQKARHVEVQIFGNSFGEVVALGERDCSIQRRNQKVIEESPAPNFPSYIRENMLQAATRLAKEVGYRSAGTVEFLYDAEAEKFYFLEVNTRLQVEHGVTEEVLNIDLVEWMLKEACDELVNLPSLLPVPSGHSIQARIYAEDCLNDFRPSGGQIDQAIFSKSSRVETWVRDGITVTSLYDPMLAKIIVHGETREEALLKLSAALKETRLYGITSNLQYLQGLLEEKACKTGDVYTRMLNSYTPSEQAIEVLDGGVQSTVQDYPGRTGHWNVGVPPCGPMDPFAFRTGNKLLGNLPDAPGIEMTLRGGSYKFRDDVSLCITGANMHATLDGAEIPMYKTIQAKPGQILSFSEATEGMRTYLLIGGGLDMPKILGSSSTFTLGSFGGHGGRALRTGDVLRVSDYAHVENELALSDQPTMSKEWTIGVIPGPHCTEEFLQPEYLQQLTNTKWEVHFNSSRTGVRLIGPAPFWTREDGGEAGLHPSNIHDNAYAIGTLDLTGDMPILLGPDGPSLGGFVCPVTTASAEFWKIGQLHPGDKISFKLIDLEQAEKLKCTQEDFLQRIGTSASLPVLTNPVAQPLKSDYPLLINETENRRFPFSVRCSGDANILVEYGEMELDLLLRFQVHALMEAIQKRKDLPVLDLTPGIRSLQIHIDATKMSILELCQHISAIDRALPPLEEMEVPSRIVKLPLSWDDPATQLAIERYQQNVRPDAPWCPSNLEFIRRVNGLDHIEDVKRVVFDANYLVMGLGDVYLGAPVATPLDPRHRLVTTKYNPARTWTPENAVGIGGAYMCVYGMEGPGGYQFVGRTIQMWNRLRQTESFEAGKPWLLRFFDQIQFYPVEADELLKLREDFLRGRFEADITETTFKLGEYLDFLSSIEESTAAFRHTQQAAFQTERENWKALGLAEYVSEHETAEITEQELPEGTEAARCTMPGSVWKVLVEEGQKVEKGDTLIIEESMKMEFPQLAPMDGYISSIHVKPGDEVQVGQLIAGIKAFAPITN
>NZ_CP041066.1|WP_029324911.1|1480715_1482467_-|allophanate-hydrolase
MKTVSLPKTFSVQWLRDMYIKKELTPEDVVHQILTRVEADKDMNIWITPPTLGELKPYLDRLAMLSPEALPLWGIPFAVKDNIDVAHVPTTAGCKEYTYIPSEHATVVQRLIDAGAIPLGKTNLDQFATGLVGTRSPYGETHNALKSELISGGSSSGSAVSVARGHAAFSLGTDTAGSGRVPAGLNRLIGYKPSLGAWPSAGVVPACKSLDCVTAFAHEWNDVVLVDSIIRGVDDQDPWSRSVVRASSALPEKICMVKEPLSFYGPFAEQYEEAWKQAVKKIEDLSIPIEYIDGSYLSEAAALLYDGPYVAERWADLGEFITSHEETAFPVTEQVLRSGAKSEYNAAALFQASHKLQSFKHKAYHQLKNAVLVMPTAGGTWTREQVRENPIETNSDMGRFTNHCNLLDLCAVSLPSQDADLDLPFGISFFSTFDGEQFICGLSELFLNGERTADSKKDTTLVAVCGLHMRGFPLESQMREHGASFVRKDQTAPYYQLFKLPTSPAKPGLLRTHQQGEKIEVELWKIPLSLLGSFADSIPSPLGLGKITLEDGSKVAGFLCEAHATEDAEDITSYRGWRALSTY
>NZ_CP041066.1|WP_029324910.1|1479587_1480463_+|sugar-phosphate-isomerase/epimerase
MPNQFSLAYLTVLGCSPPEMTYMAAKAGYDFVSLRPIYMGLPGEPNYALTENKQLMRETKSAMSETGVKLLDIELARIYEGVDPKRYLPAMEAAAELGGRHVLSSIWTDDRNFGIECFAELCDLAKPFGLTIELEFVPIASVYNLKGAMDVLHTANRENAGLMIDIHHFHRSGDKVEDLEDVPREWFRYLHLCNASAEIPSSKEEMTRVLREERLYLNEEGIDVASIINRIPQVPYSIELPNVKRANELGYEEFARQCLQTAKQYLDKHPRKKYVSHDAVGQDQLRFHSTR
>NZ_CP041066.1|WP_029324909.1|1478047_1479496_+|aldehyde-dehydrogenase-family-protein
MIETIEKKSQPYINGGWIIENREVALIKNPYSGEVIGEQLLANEEDVEKALASAYEAKKHVAALSSYQRSKILKKAALLLEQEKEKFARLISLELGKPLKNTLDEVARSIETLELSGEEAKRLIGETLPGDVSERGAQAIASTFRVPVGVVAAITPFNAPLNLVCHKIGPAFAAGNSVILKPSSQTTLIATELLKLLLRAGFPKNAVNMVLGRRQVAQQIVKDDRVNIISFTGGTVASKNICELAGMKKVLLELGGNAATIVHNDADLNRAAAMCAKTGFSNSGQSCISVQRIYVHQSVLSEFTNLLKDEVLTLKIGDPLLPDTDVGCVVDVHAAERVTSWIDEAVQSGAQVICGGKRRGATVEPTVLLNPSKESKVICEEVFGPIISIVPYATIEEAIEETNDSAFGLQAGIFTNKMDLAYKVAHSLEMGGVVINGTSNFRLDHWPYGGVKNSGIGREGPRYAVEEMTETKMIVLRLLTEN
>NZ_CP041066.1|WP_029324908.1|1476940_1477897_+|hydroxymethylglutaryl-CoA-lyase
MNTIQKIELPEKVIICEVAPRDGFQAEHEWIPTEEKISIIRQLAKTGIQSMEITSFVHPRAIPQLKDAEQVVESVQDLTNIKFRALVPNVKGAQRAIDAGVKKLKLMLSATDSHSLSNANCSVEEAQKGFYPIIELAEKHNVKVGGSISVAFGCPYEGKVAIERISSIVERYKMMGVEEISLADTTGMANPQQVYRMLGFLKQNYPGIIFSMHLHNTRGMAFSNVVAALQQGVIHFDSSIIGLGGCPYAPGATGNIATEDLVHGLSEMGIHTGIDLNKLIEAAKEVKQVIGHDGGSYMLQAGPCSQLHAKPKVQEKLV
>NZ_CP041066.1|WP_013055690.1|1492127_1492760_+|NAD(P)-dependent-oxidoreductase
MKIGVIGATGKAGQLIMEEAKQRGHEVTAIVRNASKLKNQTNVMEKDIFAITSKDIEQFDAVVDAFNAPPGSEQLHVESIQSLIKVFQGVQTRLAVVGGAGSLFVDAEKTTPLMSTEGFPAAYYPTASNMGKGLKELEKSTVNWTYLSPAAFFDAEGARTGAYQLGKDHVITNSQNESYISYADYAIALIDELENKNHVNERFAVVGEKA
>NZ_CP041066.1|WP_053486894.1|1492932_1493919_+|Gfo/Idh/MocA-family-oxidoreductase
MIRFGVIGTNWITDRLLESAQYVDDFQLAAVYSRTIEKAEEFAGKYDIPHIFTDLEEMAASAEIDAVYIATPNAYHAEQAILFLKNNKHVLCEKPLAANAAEVTRMIQTAKNHKVLLMEAMKSTLLPNFKVIQENLHKIGPIRKYVASYCQYSSRYDKYKEGIVLNAFKPELANGSLMDLGVYCLYPLITLFGGPHKIKATAFMLESGVDGEGSVALEYEDRDAVIMYSKITNSHLPSEIQGEKGSMIIDKIHTAEKVEIRYNDGRVEELTVDQPYPAMYYELNEFVELLKQGKMESDTNSYENSYLTMHVMDKVREQIGLVYPNDEK
>NZ_CP041066.1|WP_014461319.1|1494531_1495074_+|peroxiredoxin
MAERMVGKQAPRFEMEAVLANKEFGKVSLEENMKNGKWTVLFFYPMDFTFVCPTEITALSDHYEEFEDLDAEVVGVSTDTIHTHLAWINTDRKDNGLGDLNYPLAADPTHAVARDYGVLIEEEGVALRGLFIINPEGELQYAVVNHNNIGRSVEETLRVLQALQTGGLCPANWKPGQKTL
>NZ_CP041066.1|WP_013055693.1|1495191_1495635_+|TlpA-family-protein-disulfide-reductase
MKLREQMPELTGATSWINDEVTKEDLVGDKATLIHFWSVSCHLCKEAMPEVNDLRDEYDDQLNVVAVHMPRSEDDLDMGVIEAMAMGHDITQPIYVDSEHKLTDAFENKYVPAYYVFDKEGQLRHFQAGGNGMPMLRKRINRVLGEE
>NZ_CP041066.1|WP_055989280.1|1495783_1495963_+|hypothetical-protein
MIGGQSEDSCGKSGTGETPQERMRRGGSPAARGKRSLARKSTAVSQADQLMYPICSSLN
>NZ_CP041066.1|WP_029324918.1|1496160_1496772_+|sigma-70-family-RNA-polymerase-sigma-factor
MTQLYSQQEKRHDKECTFHTFLTNHSATLQTHIMNTFLTPERYERLQKAVVKNDTKEQILLNKEFHQFYSEVRLLHYINKLCRHYSRDVMRVKEKERSYIPLRLQQPAALDGNRTVEDMLGVQDGAVWEHGFLGNQLENRILHHAFRQLTAKQQCMLHLIIVERWTHKEIAAYFSISQQAVSSHYQRALSKLKKIMKVSDRYV
>NZ_CP041066.1|WP_013055696.1|1496764_1496911_+|YvrJ-family-protein
MFDPQWLQLVGNVGFPAVLSFYLLLRVENNIKRLEEKVEELTTDLRKK
>NZ_CP041066.1|WP_013055697.1|1496915_1497143_+|hypothetical-protein
METLYELVNKVKAGDEEASRRLLKKLEPKLNKAVQSFSLHEREDVKQDLKIKILSAVKTFDFSKTPGLWEFLRHK
>NZ_CP041066.1|WP_098660402.1|1497624_1499049_+|diguanylate-cyclase
MYRLIYYGCSYGLLGSILMIYTIKIDSTIILDLRFLAVTIVCLYAGMVPAIIAACIIGVMRLLLFGITASGIIGAATIIVMALLSGWTVRLPYRPFIRFQLMNSISLLCVFFSLSFLFKDIKHAATIIIYLLPASFIGGCLVYLVGRYIYVSRVTTSQHKKLSKMFSVMVQNAKTGTMIETPEREVAVINQTFCDMFDIPGPPNQYVGLKSNQLFLSHAPMLKDPARFLKTVESTVYSKESIVDEEITFINGKIYARDYIPIYEGHVYIGHYWEYRDITEKKKAECDLRKANKKLEMLSMKDGLTGLNNRRSLDKQLEIEWGYAKKEKEPLSFLLFDIDYFKAYNDTYGHIQGDECLKEVANIAKSVVFDEPAFVARYGGEEFGILLPRANQYEAIKMAEAIRQQVEQRGIIHQASGVFKCVTISVGIMTVVPSENIPPISIVHQADQALYEAKRTGRNRISVYSHHKEADSNV
>NZ_CP041066.1|WP_013055701.1|1499077_1499251_-|twin-arginine-translocase-TatA/TatE-family-subunit
MNLGFGEIALIVFVALLLFGPKKLPELGKAAGKTLKEFKNATKGIMEEDEKEKAPPK

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Crispr_ID: NZ_CP041066_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041066_4

1592713-1592793

Orphan

Consensus_repeat	Method
ATAATGAATGATAGTCATTCATT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP041066_4

>merge|NZ_CP041066|4|1592713-1592793|CRISPRCasFinder
ATAATGAATGATAGTCATTCATTATTCTTCTTGCTGTTTATAAATTTCCATCACATTAATCATAAATGAATGATAGTCATT

>NZ_CP041066|4|3|1592713-1592793|CRISPRCasFinder
ATAATGAATGATAGTCATTCATT	ATTCTTCTTGCTGTTTATAAATTTCCATCACATTA
ATCATAAATGAATGATAGTCATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041066.1\|WP_098526632.1\|1588459_1589389_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223566
NZ_CP041066.1\|WP_140456648.1\|1584635_1584872_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041066.1\|WP_013055793.1\|1587766_1588411_+\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|236472
NZ_CP041066.1\|WP_055989202.1\|1598505_1599471_-\|DUF979-domain-containing-protein	unknown	unknown	gnl\|CDD\|377620
NZ_CP041066.1\|WP_013082079.1\|1582054_1582318_+\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP041066.1\|WP_098278298.1\|1585177_1587709_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NZ_CP041066.1\|WP_057274448.1\|1582318_1582957_+\|SdpI-family-protein	unknown	unknown	gnl\|CDD\|227945
NZ_CP041066.1\|WP_140456649.1\|1589910_1592355_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP041066.1\|WP_064471383.1\|1592860_1594240_+\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NZ_CP041066.1\|WP_053486937.1\|1600552_1601464_+\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|372305
NZ_CP041066.1\|WP_041816506.1\|1584420_1584639_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041066.1\|WP_064471384.1\|1594292_1595165_+\|carbon-nitrogen-hydrolase	unknown	unknown	gnl\|CDD\|143597
NZ_CP041066.1\|WP_013055804.1\|1599471_1600176_-\|DUF969-domain-containing-protein	unknown	unknown	gnl\|CDD\|368767
NZ_CP041066.1\|WP_061859612.1\|1596891_1597620_-\|flagellin	unknown	unknown	gnl\|CDD\|183759
NZ_CP041066.1\|WP_140456647.1\|1583105_1584098_-\|DUF3231-family-protein	unknown	unknown	gnl\|CDD\|371599
NZ_CP041066.1\|WP_013055802.1\|1597849_1598491_-\|pyroglutamyl-peptidase-I	unknown	unknown	gnl\|CDD\|237299
NZ_CP041066.1\|WP_064471387.1\|1603105_1603663_-\|HPP-family-protein	unknown	unknown	gnl\|CDD\|377434
NZ_CP041066.1\|WP_140456650.1\|1595161_1596325_+\|class-II-histone-deacetylase	unknown	unknown	gnl\|CDD\|212521
NZ_CP041066.1\|WP_064471386.1\|1601528_1602998_+\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|226987
NZ_CP041066.1\|WP_013055795.1\|1589425_1589704_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP041066.1\|WP_098526632.1\|1588459_1589389_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|223566	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones].	5.99315e-71
NZ_CP041066.1\|WP_013055802.1\|1597849_1598491_-\|pyroglutamyl-peptidase-I	gnl\|CDD\|237299	PRK13197, PRK13197, pyrrolidone-carboxylate peptidase; Provisional.	3.66725e-129
NZ_CP041066.1\|WP_013055793.1\|1587766_1588411_+\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|236472	PRK09347, folE, GTP cyclohydrolase I; Provisional.	4.54601e-101
NZ_CP041066.1\|WP_098278298.1\|1585177_1587709_+\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	3.15198e-113
NZ_CP041066.1\|WP_013082079.1\|1582054_1582318_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	3.46054e-24
NZ_CP041066.1\|WP_061859612.1\|1596891_1597620_-\|flagellin	gnl\|CDD\|183759	PRK12804, PRK12804, flagellin; Provisional.	9.7446e-84
NZ_CP041066.1\|WP_057274448.1\|1582318_1582957_+\|SdpI-family-protein	gnl\|CDD\|227945	COG5658, COG5658, Predicted integral membrane protein [Function unknown].	1.06538e-20
NZ_CP041066.1\|WP_140456649.1\|1589910_1592355_+\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.06878e-103
NZ_CP041066.1\|WP_064471383.1\|1592860_1594240_+\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	2.922e-40
NZ_CP041066.1\|WP_053486937.1\|1600552_1601464_+\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|372305	pfam12773, DZR, Double zinc ribbon. This family consists of a pair of zinc ribbon domains.	1.48305e-05
NZ_CP041066.1\|WP_064471384.1\|1594292_1595165_+\|carbon-nitrogen-hydrolase	gnl\|CDD\|143597	cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.	3.68631e-147
NZ_CP041066.1\|WP_013055804.1\|1599471_1600176_-\|DUF969-domain-containing-protein	gnl\|CDD\|368767	pfam06149, DUF969, Protein of unknown function (DUF969). Family of uncharacterized bacterial membrane proteins.	7.57456e-110
NZ_CP041066.1\|WP_064471386.1\|1601528_1602998_+\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|226987	COG4640, COG4640, Predicted membrane protein [Function unknown].	4.7734e-42
NZ_CP041066.1\|WP_140456647.1\|1583105_1584098_-\|DUF3231-family-protein	gnl\|CDD\|371599	pfam11553, DUF3231, Protein of unknown function (DUF3231). This bacterial family of proteins has no known function.	1.61792e-42
NZ_CP041066.1\|WP_064471387.1\|1603105_1603663_-\|HPP-family-protein	gnl\|CDD\|377434	pfam04982, HPP, HPP family. These proteins are integral membrane proteins with four transmembrane spanning helices. The most conserved region of the alignment is a motif HPP. The function of these proteins is uncertain but they may be transporters.	9.20778e-29
NZ_CP041066.1\|WP_140456650.1\|1595161_1596325_+\|class-II-histone-deacetylase	gnl\|CDD\|212521	cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII. This subfamily includes bacterial as well as eukaryotic Class II histone deacetylase (HDAC) and related proteins. Deacetylases of class II are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues of histones (EC 3.5.1.98) and possibly other proteins to yield deacetylated histones/other proteins. Included in this family is a bacterial HDAC-like amidohydrolase (Bordetella/Alcaligenes species FB18817, denoted as FB188 HDAH) shown to be most similar in sequence and function to class II HDAC6 domain 3 or b (HDAC6b). FB188 HDAH is able to remove the acetyl moiety from acetylated histones, and can be inhibited by common HDAC inhibitors such as SAHA (suberoylanilide hydroxamic acid) as well as class II-specific but not class I specific inhibitors.	0
NZ_CP041066.1\|WP_055989202.1\|1598505_1599471_-\|DUF979-domain-containing-protein	gnl\|CDD\|377620	pfam06166, DUF979, Protein of unknown function (DUF979). This family consists of several putative bacterial membrane proteins. The function of this family is unclear.	1.50423e-143

>NZ_CP041066.1|WP_140456649.1|1589910_1592355_+|EAL-domain-containing-protein
MIMKRLDRLNTQLLKEYSEGIFFINCEGDIMFSNEAAFKLTGNEHKEKSQQLTALIHTSKQQQAQDFFQRALQGEKVQFSTTINHNTKKELHLYITLIPIIVSEQVAGVYAVCRDDSKEQERSNHISQLETHLKMEQKLANVGSWYYDVRENKSYWSPQLYNIYGLNPNQHFTPSLKNVLQFIKECDQKRLEEAVTEALSTGESYKIEYALMRPNGEERTVFEQADALVDEQGNIVQLIGVVHDITESKVITNELKQKEQQFQTIYNNLDAGIWSIDVQSNEMIVCSSGVSNIYGEDAAKFLGNRDLWESCIHPEDKPAVAKGQHQLQKGKMIRQQYRIYTKTGEMKWVKDRCIPTLDENGKLMRIDGIVEDITAEKKYMDHVEYLATHDHVTNLPNRRKFERELKNFIRQMKKERDLLAVFYLGLNRFKHINDTLGHDVGDRLLQRIANRLKKCVTPDVMLARAGEDELAICFLSLAHINECQKLAAALLQEIEKEITIDDFSLYVTASIGISIYPHDGEDAKMLLTNANLAMRRAKEVGRSDWQLYSPLMDSETYKSYHLEKGLRNALLQDEFFIEYQPKVHTNSREIDSIEALIRWNHPEWGRVSPEDFIPLAEETHLIIELGDWVIQHVCKQLQQWKNQGLQIVPVSINVSSKHLLKRGFVEHVQQTLAHYNIDPSFIEFEVTESSIIQYEEHVKKVMDELKKIGVTFALDDFGTGFSSLSHLKDFEFNTLKIDKTFIQHVTDKGKQQAITKSILYLAHALNMKVIAEGVETKEQLAFLQKHECTFIQGYIVSQPAAPQKIAEYLKRRFL
>NZ_CP041066.1|WP_013055795.1|1589425_1589704_-|hypothetical-protein
MTQSPKKYDLFSRGSFQTAAFLLLFSPLFTRLFQQNVWAYITVASIIILFNFITECILVKRISAVPKNYIAFFQTICLPVNILLLCFFYYVT
>NZ_CP041066.1|WP_098526632.1|1588459_1589389_+|NAD(P)/FAD-dependent-oxidoreductase
MQHVDVLIIGGGPAGISAAVWCKRLGVDCLLLEEQAQLGGQLFTIYNEIIDYPGIQAENGIEMQRKMVQHFIDMGCLYEVNTKVISIDERSKTVKVKQQETEKEIGYTYLILATGSSQRKLGVPGEQQMIDRGEVYSASADGERLKGKRVALIGGGDRAFEGAHLLASQAKQVYLIHRSTHFKAREQYVEKVLSDPGVKVMTDTEVTAIHGKHHVTSIDLKSKNSECKNLSVDAVLIRLGVAPNVELIKEKVTTTQSGLIVINEVHQSSDPAIYAIGDACTTPLFSSISSSAGQGAIVAKYVSSLLKKS
>NZ_CP041066.1|WP_013055793.1|1587766_1588411_+|GTP-cyclohydrolase-I-FolE
MALSTQNLIAQKFLETLGTNSTEIDKKIGQADTFMNAVKELIDLCGDNPERDGLEETPYRVLKAFLEYTEGYREDPKAHLEKTFDVNHNELVLIRDIEFHSMCEHHFAPFFGVAHVGYIPDKKITGLSKIARTVEGYAKRFQVQERLTNEIADAIEEVLEPKGVMVIIEAKHMCMCGRGIKKSSASTATSSVRGTFMEKPEVRGEFLSLLQRQM
>NZ_CP041066.1|WP_098278298.1|1585177_1587709_+|EAL-domain-containing-protein
MSIKKKLSVFFTLLVLCILLANNTLHYIRSKNRLIEFNKKEITLVTEEIAYEVENSKNSASYMENRMAQELRTASVAIQDSLPADYHDVSNDELKRLAKKLMISHITLLAPAGDDIIGVKSSDPKEINMSTKEWGYWYTSFRQLLSQQTITTKKGVTLPHFWSGPIEVASSNPNHIDKWGYYYDGSTNYIIDPYFRDRHVLDFEKRFGPTNVMNRFTENLEGVLELTVFNPKNFGKRNQNVYLNGNKYIKIKDQPIWYGTYTYRNTERDKKSIQEVLKTGKSQSYLAEINHKKVLKTLVPIKEKNTPAYVIGVVYDYGLIEKELQQELIKHLLLSLPFIFIVLIISFIFSTSITRPIKHIMEHVNQIAKGNFGKVLNTRRKDELGGLVANINHLSHFLKTYVDDLKKSQEESEYHAYHDFLTGLPNRRYFKEQLNRRLIESKEKSIRHVAVLFMDIDRFKDINDTLGHSKGDQLIQLIANRIKECLPSANSFLTRQGGDEFVILFSDFTPEEVKGITEKIMAYVQQPCYIDNDEVFVSISSGLSFYPEHSTNLDTLITYADVAMYASKRQGGSKVSIYHDSLNKKQAEKVHIETRLRKAIQKGDIDVYYQPKIEAKRNVITGVEALVRWNDAELGFVSPEAFIPIAEEAGLIQYLWEVVMKKACSQVSEWNKVSDEKMTLAVNFSPRQFQDPVVLVNEIKHFLSLHRFDPAWFEMEITESTLLMNAEETIKALHLLKKYGISISIDDFGTGYSSLSYLKKLPIDCLKIDRSFIQDIQEDYSNSEIAQAIISLSQSLKLEVIAEGVEEEYQKAFLMKNGCDHMQGYLFSKPLAAEDFEEAFLNS
>NZ_CP041066.1|WP_140456648.1|1584635_1584872_+|hypothetical-protein
MNKQPWHRSEKFLLLLCFFAPPIGYVAVIVNKKKLSRELWLSNLTVATIIMSIWLLKFLPHQWGTIILLTGVGIYWYH
>NZ_CP041066.1|WP_041816506.1|1584420_1584639_+|hypothetical-protein
MKFFKDASKREHQNWNKAVSAGFYILLLLLFVNIIMYTYKGAELVSSSSMFWTGIVVTFGYQFILNRKSEKK
>NZ_CP041066.1|WP_140456647.1|1583105_1584098_-|DUF3231-family-protein
MNAESKRLTSTEITSLCAQYHQDTLAVCVAKHVLATVTDAEIRSLFGFSLELSKKHIELLTAIFRAEHFPLPNGFTDEDVDLHAPPLFTDSFWLKYLHDMTIHGLSGYGISFSVSIRRDIRDYYHQCNLDAMEIYNRSLDLLLAQNLYMPAPYFLTPKKQESITDLSYALDFVGKQRLLNANEAGNIYFNLRKSMVTKALLIAFKQVSKRKDVRKVMETGLDVAHKHIELYSSIMHEENLHTPPLLDNEITTSTHAPFSEKLMTFHAGAMFKVAITYYATAMTTSMRLDIVGHCEACILRDLKVAGRCSEVMIKNGWIEKPPEASDRKEV
>NZ_CP041066.1|WP_057274448.1|1582318_1582957_+|SdpI-family-protein
MKKHLFPLGITLLTLVAWLIALPHLPATMPIHWGANGEADGFATKINAMILTVGIMALIYFIIAFVPRIDPRKENYKYFSKTYNILLNAVLLLFFFVNMSTILQGLGYNVPMSYIAPIMAGLVFIIIGNYLQRVRSNYFMGIRTPWTLSNETVWKKTHRLSGKLFFIGGLLILISAFLPDGYKSVIMWGSIVLCVAIPYLYSYLAYKKEMNM
>NZ_CP041066.1|WP_013082079.1|1582054_1582318_+|winged-helix-turn-helix-transcriptional-regulator
MNETFKALADPTRRKILELLKERDLTAGEISEYFNMTKPSISNHLKILKQADLVQDEKRGQFVIYSLNTTVFQDLIGWFFSFQKGES
>NZ_CP041066.1|WP_064471383.1|1592860_1594240_+|APC-family-permease
MEGKPSATFVRTLTLRSLVILGLAYMAPMTVFTTYGVVAQTTHGMVSMAYVLALAAMLFTAYSYGHMAKEYPLSGSAYTYTQKSISPHIGFLVGWSVLLDYLFLPMINFLLAGTFLSAAFPSIPSSLWILLFIVIITCINVFGIQMTAKVNGILVLFQFLVTALFVVLSIKKMIEGESDILFFSSLQLFDSGNSFSFVLSGASILCLSFLGFDAVTTLSEETVDPKKNVPKAIFLVAFIGGILFILVSYITQLVYPNYHSFKVVDSASFEIAAYIGGTLFSSVFLAGIITSTIASGISSHASASRLLYAMGRESMLPKRLFAYIHPKYKTPSRNVIFIGVLSLSALAMDVVTAASFINFGALIAFTFVNISVIFHYYIRGKQRDFKGTCRYLISPIIGAVFTVWLWTSLDIKSISLGSIWVVIGFIYLVYKTSFFTKAPPQFAFDEKTEPNQLKTEHIS
>NZ_CP041066.1|WP_064471384.1|1594292_1595165_+|carbon-nitrogen-hydrolase
MKETVKVGLIQVECEESVEANINYTFTKIKDAAANGAQIICLQELFNAQYFPQSVSPAGYELAIPAESSVLKEMAELAEELKVVLIVPFYEKAARGVYFNSAAVFDADGTCLGITRKNHIPDGPNYHEKYYFVPGNTGYPVYETQYGVIGVGICWDEWFPEVARILSLQGADILFYPSAIGSEPDHPELSTRPAWEKAISAHGISNGVFVAAVNRVGTEKEMTFYGGSFVSNPMGEILQSLTDEEGILIQEVDLKEIDSTRNLLQFMRDRRPDTYELLLKKEAFRAPLNI
>NZ_CP041066.1|WP_140456650.1|1595161_1596325_+|class-II-histone-deacetylase
MSLISSIKRKEPNRMIHKTSWIWDDRFLRHDTGKIQYVFEGGETVEPCDEFENKHRMNVIKEMIEKSGLVHHLVRQSPYEASDEDLLRVHTKNHIGHVQKACEAETREVGPEAYASAETEGIARLSAGAVMKAVDTVMESETISKVYAQIRPPGHHASSDQAMGFCFYNNVAVGAAYAIEHYELKRVAILDWDVHHGNGTQDIFYERDDVLVISIHEEDYFPLESGQVHEAGQGKGEGYNVNIPVPSLTGDEGYRYVFESIIAPVISQFEPELIIISAGQDANALDPISRLMVTREGFKYMANKVRELAETCCEGRLIVAQEGGYNLAYLPIATMGVIEGLTGVDVNWKDPHVLPHRTTPTALFQAVDNVVNYQKRFWKFAEKESFC
>NZ_CP041066.1|WP_061859612.1|1596891_1597620_-|flagellin
MRINHNITALNTYRQYNTANNAQAKSMEKLSSGQRINNAADDAAGLAISEKMRGQIRGLDQASRNAQDGVSMIQTGEGALNETHSILQRVRELAVQSSSDTNTTDDRAEIQKEVTDLISEVDRIATDTEFNTQKLLDGTGGNAGKFTFQIGANKDQKIDVTFAKMDSTSLGVKDIDLSVDAATSTAAIDTIDTAIKNVSDERSQLGAKQNRLEHTINNLSTSSENLTAAESRIRDVDYALAA
>NZ_CP041066.1|WP_013055802.1|1597849_1598491_-|pyroglutamyl-peptidase-I
MTTVLLTGFEPFEGESINPSLEAVKTLDGVAVEDYRIIAKPLPTVFGESLSKLHTYIEEISPSIVICVGQAGGREGITVERVAINVDDARIPDNIGQQPIDRPIIENGPAAYFSTLPIKAAVENLRQAGIPSSVSQTAGTFVCNHVFYGLMNMIQNCCIKGGFVHIPYLPEQAVNHPGKASMSLDLIVQGLLSIAKTTIVTEDDILVSGGATH
>NZ_CP041066.1|WP_055989202.1|1598505_1599471_-|DUF979-domain-containing-protein
MKSILTLDTIYYLLGIIVAFIAIRIARDPNHPNRLGSSLFWALFSITFLFGNVIPPFYVGCLVIIMVLLASFNRVTKSNEAETPAEERVAHAQRLKNKIFLPALFIPIFTIIGTLLFGKIKFGNWALIDPEKVTLISLAIAAVIAFIASMGVTKAKMDVPVKEGSRLLQAVGWAVILPQMLAALGGIFSKSGVGTVVSDIVSDVLPTNYAFVAVLAYCLGMLLFTIVMGNAFAAFAVITGGIGLPLIVHMHGGNPAIMAALGMFAGYCGTLLTPMAANFNVVPAMLLELKDKNAVIKAQVPIALSVFVINTLLMYYLVYHF
>NZ_CP041066.1|WP_013055804.1|1599471_1600176_-|DUF969-domain-containing-protein
MLKLIGVLLVAVGFLFRLNTLLVVTVAGIVTGLVSGLSLHEVITMFGQFFVDNRYMSMAILLTLPIFGVLEKYGLKEQAEVLIKKAKNASSGNVLLIYLFIREISAAVGLNIGGHAQSVRPLVAPMSEGAARAKYGELPPKVKEDIRAHAAAAENTGWFFGEDIFIATGGILLMKGFFDSVGIHVDVWDMALWGIPTAISALVISAIRFRQLDRRIHKKMTKHKPTSSSKTEAS
>NZ_CP041066.1|WP_053486937.1|1600552_1601464_+|zinc-ribbon-domain-containing-protein
MNCSNCGHLNDGGKFCVKCGHKLQEEAAVSQTAAASEYQSQSQPQTAYVPQQPNQRVRQAKKVSKSFFSYFTEGIKNPTAIAHAAGESQFVNALITVILYALSIPIMLYVGWKLLLIQFVRSMFKLPIISEELAPSDMEDFNTGTDLIKATDINSIIHFNFTDFVFKQGIFIFIGLAVIIGATYVAAKFGKVDVSFKEFFSRFGTFMIIPTALLLIGLVLAFLHVEYFSYFMNFGLLSIFLVVPFTIASFKQNGTNGLDRIYSTLIVYVVITIVLTFIANGLGEEAKTIITRMGNSSELNDLF
>NZ_CP041066.1|WP_064471386.1|1601528_1602998_+|zinc-ribbon-domain-containing-protein
MGYCRECGHQLTNEHEFCPECGHPVERKAASSEGAASQRYAEPASSSVEEGRQSVKPSNKKTKVITISVIAAAAILGGAYYGIDKTMMAPKAVSEKFIASVKGNDVDKVKKYVNDGQIQLEANDEQTKSFITYLHENPDVMKSISEGLAADSRALEAGVPSEDHSSYAKIEQDGKKWGIFDHYTVQINPVYAKAQSTEDATVVYIDGQKAGTVSSDSSKKVGPFLPGTHIVKGEVQNDYGKVENEQEIEATNGEDVDVEFDWSDHAVYISSDYDDATLFVNGKDTKTEIGDIDYLGPLPMDGSIKIYAKRKFDSGEKKTEEVSIKKGIEDVALNFDEENTTEATAKASAPSKNQETTDKGSEVNSGVSTSEVSSFIEQYMYATISSINSGDFSVAEPYIDTNGPKYKEQKDYTAYLIKKGITEDLLSFNVNRVTKIDDSMYKVYTTEEYDISYGDGSVKYKKFNSIHKVKELSDGSLGVYQLISSTEVK
>NZ_CP041066.1|WP_064471387.1|1603105_1603663_-|HPP-family-protein
MEFEKSFSQTKSPFLSYLSSYAKKMKGELKEEPKINYRDAVVSSIGGLIAIIISSAIALALGYPMALAPIGASCVLVFGAHKGPLSQPRHVLGGHLLATVSALIIWSLFHRSLITIAIVLAFVLILMILTKTVHPPAAASAIVAINTQAGWGYLGIIMICACVVVLISTVYNNLFQDRQYPRYWV

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Crispr_ID: NZ_CP041066_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041066_5

1922750-1923160

Unclear

Consensus_repeat	Method
CNNCGAGNAGAACGGCGA	CRT

9 spacers

The CRISPR arrays of NZ_CP041066_5

>merge|NZ_CP041066|5|1922750-1923160|CRT
CCACGAGAAGAACGGCGGGTACTTCGGGAAGAACGGCGAGAAGAACGGCGAGAAGAGCGGCGAGTAGAACGGCGAGAAGAGCGGCGAGAAGAACGGCGAGAAGAGCGGCGAGAAGAGCGGCGAGTAGAACGGCGAGAAGAGCGGCGAGAAGAGCGGCGAGTAGAGCGACGAGAAGAACGACGAGTAGAACGGCGAGTAGAACGGCGAGTAGAACGGCGAGAAGAACGGCGAGAAGAACGGCGAGTAGAACGGCGAGAAGAGCGGCGAGTAGAACGGCGAGTAGAACGGCGAGTAGAGCGATGAGAAGAATGACGAGAAGAACCACGAGAAGAACGACGAGAAGAACTACGAGAAGAACTACGAGAAGAACGACGAGAAGAACTACGAGAAGAACTACGAGAAGAACGGCGA

>NZ_CP041066|5|2|1922750-1923160|CRT
CCACGAGAAGAACGGCGG	GTACTTCGGGAAGAACGGCGAGAAGAA
CGGCGAGAAGAGCGGCGA	GTAGAACGGCGAGAAGAGCGGCGAGAAGAA
CGGCGAGAAGAGCGGCGA	GAAGAGCGGCGAGTAGAACGGCGAGAAGAGCGGCGAGAAGAG
CGGCGAGTAGAGCGACGA	GAAGAACGACGAGTAGAA
CGGCGAGTAGAACGGCGA	GTAGAACGGCGAGAAGAACGGCGAGAAGAA
CGGCGAGTAGAACGGCGA	GAAGAGCGGCGAGTAGAA
CGGCGAGTAGAACGGCGA	GTAGAGCGATGAGAAGAATGACGAGAAGAA
CCACGAGAAGAACGACGA	GAAGAACTACGAGAAGAA
CTACGAGAAGAACGACGA	GAAGAACTACGAGAAGAA
CTACGAGAAGAACGGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041066.1\|WP_013056130.1\|1933337_1933541_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_CP041066.1\|WP_013056110.1\|1918251_1918851_-\|Holliday-junction-resolvase-RecU	unknown	unknown	gnl\|CDD\|235015
NZ_CP041066.1\|WP_013056115.1\|1921563_1921758_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|290882
NZ_CP041066.1\|WP_013056125.1\|1929563_1930223_-\|SIMPL-domain-containing-protein	unknown	unknown	gnl\|CDD\|225516
NZ_CP041066.1\|WP_013056128.1\|1932226_1932772_-\|YhcN/YlaJ-family-sporulation-lipoprotein	unknown	unknown	gnl\|CDD\|131944
NZ_CP041066.1\|WP_029325133.1\|1923437_1924523_+\|spore-coat-protein	unknown	unknown	gnl\|CDD\|227642
NZ_CP041066.1\|WP_013056127.1\|1930455_1931934_-\|sodium/proline-symporter-PutP	unknown	unknown	gnl\|CDD\|273981
NZ_CP041066.1\|WP_140456693.1\|1915341_1918188_-\|PBP1A-family-penicillin-binding-protein	unknown	unknown	gnl\|CDD\|273955
NZ_CP041066.1\|WP_016763459.1\|1913299_1914007_+\|DnaD-domain-containing-protein	unknown	unknown	gnl\|CDD\|226445
NZ_CP041066.1\|WP_013056113.1\|1920560_1920911_+\|YppE-family-protein	unknown	unknown	gnl\|CDD\|378052
NZ_CP041066.1\|WP_029325136.1\|1926888_1928034_+\|PLP-dependent-transferase	unknown	unknown	gnl\|CDD\|366438
NZ_CP041066.1\|WP_013056116.1\|1921987_1922401_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372950
NZ_CP041066.1\|WP_029325130.1\|1918924_1919920_+\|DUF2515-family-protein	unknown	unknown	gnl\|CDD\|371209
NZ_CP041066.1\|WP_029325131.1\|1920260_1920515_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041066.1\|WP_013056123.1\|1928017_1929199_+\|PLP-dependent-transferase	unknown	unknown	gnl\|CDD\|366438
NZ_CP041066.1\|WP_064471477.1\|1914147_1914819_+\|endonuclease-III	unknown	unknown	gnl\|CDD\|223255
NZ_CP041066.1\|WP_140456695.1\|1929234_1929501_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041066.1\|WP_029325134.1\|1924653_1925805_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041066.1\|WP_029325135.1\|1925869_1926532_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041066.1\|WP_029325128.1\|1914805_1915306_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP041066.1\|WP_013056130.1\|1933337_1933541_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	1.31107e-32
NZ_CP041066.1\|WP_013056110.1\|1918251_1918851_-\|Holliday-junction-resolvase-RecU	gnl\|CDD\|235015	PRK02234, recU, Holliday junction-specific endonuclease; Reviewed.	3.74142e-114
NZ_CP041066.1\|WP_013056115.1\|1921563_1921758_-\|hypothetical-protein	gnl\|CDD\|290882	pfam14178, YppF, YppF-like protein. The YppF-like protein family includes the B. subtilis YppF protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 60 amino acids in length. There is a conserved LLDF sequence motif.	2.20049e-27
NZ_CP041066.1\|WP_013056128.1\|1932226_1932772_-\|YhcN/YlaJ-family-sporulation-lipoprotein	gnl\|CDD\|131944	TIGR02898, Uncharacterized_lipoprotein_YlaJ, sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment. [Cellular processes, Sporulation and germination].	1.5235e-35
NZ_CP041066.1\|WP_029325133.1\|1923437_1924523_+\|spore-coat-protein	gnl\|CDD\|227642	COG5337, CotH, Spore coat assembly protein [Cell envelope biogenesis, outer membrane].	1.19688e-97
NZ_CP041066.1\|WP_140456693.1\|1915341_1918188_-\|PBP1A-family-penicillin-binding-protein	gnl\|CDD\|273955	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP041066.1\|WP_016763459.1\|1913299_1914007_+\|DnaD-domain-containing-protein	gnl\|CDD\|226445	COG3935, DnaD, Putative primosome component and related proteins [DNA replication, recombination, and repair].	4.12128e-59
NZ_CP041066.1\|WP_013056113.1\|1920560_1920911_+\|YppE-family-protein	gnl\|CDD\|378052	pfam08807, DUF1798, Bacterial domain of unknown function (DUF1798). This domain is found in many hypothetical proteins. The structure of one of the proteins in this family has been solved and it adopts an all alpha helical fold.	1.48531e-35
NZ_CP041066.1\|WP_029325136.1\|1926888_1928034_+\|PLP-dependent-transferase	gnl\|CDD\|366438	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme. This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor.	0
NZ_CP041066.1\|WP_013056116.1\|1921987_1922401_+\|hypothetical-protein	gnl\|CDD\|372950	pfam14179, YppG, YppG-like protein. The YppG-like protein family includes the B. subtilis YppG protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 115 and 181 amino acids in length. There are two completely conserved residues (F and G) that may be functionally important.	1.94961e-16
NZ_CP041066.1\|WP_029325130.1\|1918924_1919920_+\|DUF2515-family-protein	gnl\|CDD\|371209	pfam10720, DUF2515, Protein of unknown function (DUF2515). This family is conserved in Firmicutes. Several members are annotated as YppC. The function is not known.	1.62297e-137
NZ_CP041066.1\|WP_013056127.1\|1930455_1931934_-\|sodium/proline-symporter-PutP	gnl\|CDD\|273981	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP041066.1\|WP_013056123.1\|1928017_1929199_+\|PLP-dependent-transferase	gnl\|CDD\|366438	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme. This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor.	0
NZ_CP041066.1\|WP_064471477.1\|1914147_1914819_+\|endonuclease-III	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	2.64908e-110
NZ_CP041066.1\|WP_013056125.1\|1929563_1930223_-\|SIMPL-domain-containing-protein	gnl\|CDD\|225516	COG2968, COG2968, Uncharacterized conserved protein [Function unknown].	6.69734e-35

>NZ_CP041066.1|WP_013056116.1|1921987_1922401_+|hypothetical-protein
MYTSKHYPYYEQHQPERFDLSQVHPFPQYHQQPWTEAYMPQHPYAQQQMPFGPQQIPYMNGMYQQPMYNNAGAPFNPYPKAQQQKPQPSQFQSLMSQFKSSDGNYDMNKMMNTAGQMMGAMNQLTSLVKGFSGIFKV
>NZ_CP041066.1|WP_013056115.1|1921563_1921758_-|hypothetical-protein
MYVNELQEAFIAVKQYEPQSSNELLDFAQQQYLKGFLTPMNYKAAVRELEQIGATKPDFSAQDD
>NZ_CP041066.1|WP_013056113.1|1920560_1920911_+|YppE-family-protein
MNEDVKKSTEIMFQYNEVAVERLASIQQEENYEVKFFEEVKPYGDIFFKELDEWASLVTEWLKKERPKYIHVNQVETLKENLQNVVLQSFYPETREKRFKKMYHSNKYVLESILNN
>NZ_CP041066.1|WP_029325131.1|1920260_1920515_+|hypothetical-protein
MKQSMVKTSEMMTLLDSLLEQVDLVDKTMSTSINEAFTHCEETYMEQVHRIDQSLQEIEVAVYESMPSETEWSRSRREMVLHTV
>NZ_CP041066.1|WP_029325130.1|1918924_1919920_+|DUF2515-family-protein
MKEDEEMSLNSSEQALLTAIKKTTDKLNIDNISRTQAYATFYHRYPEVKWAFLASMVSRNAGWNMCDLQGKTMKKALSKQTRDLLFLTYERANWLIFKDAFPQLLLYAVSRKKHVSYLHLLPYLNVSSFIEEKWRQFMQKPCELELIHALIVNEQHVIQKPVIEQPFYQDKVFKSMLFFFQDIFHFSSVLFPTTKGELYGCSVHDFTKVNNRIDLGKKLAALLFHEKYYPSFYEFSLKTKHTGSRYDYEQYFVDETSCCTPALRKVYPAIRHHEKKREKWFLTKKEEQKLMKKPHFPKKVHFTKWYLQKQKQLHILMKVAQVVNVNKNGHK
>NZ_CP041066.1|WP_013056110.1|1918251_1918851_-|Holliday-junction-resolvase-RecU
MIRYPNGKAYKPLNTSSPSPKKLEASYSNRGMTLEDDLNETNEYYVSKGIAIVHKKPTPVQIVKVDYPKRSAAVIKEAYFKQASTTDYNGVYKGKHLDFEAKETRNKTSFPLRNFHEHQIEHMKQIVKQNGICFVILMFSTLQEIYLFEAQFLFPYWDAMKKDGRKSIPKADIEKKGHFMELGYHPRIDYIKTIDKLYF
>NZ_CP041066.1|WP_140456693.1|1915341_1918188_-|PBP1A-family-penicillin-binding-protein
MSDNYRSREERRRAMNDNKPEGKSQGKPKKKKKGGLFRKIVAAVLLIGIIGLIAGVGTFFAMISDAPKVDDSVLKNSFSSKVYANDGKTVVKEIGAQKRTYVQYDEIPQVVKNAFIATEDVRFYKHHGVDFYRIGGALMANFKNGFGAEGGSTITQQVVKNSFLSPKKTVKRKVQEMWLAYQLERKYSKQQILEMYLNKIYFASGEVYGIERAAEKFYGVKSVKDLTLDEAAMLAGLPKAPTTYNPVTNPENATKRRNTVLNLMAKNGFITQAEADKAKQVDVQAHLAKQTESTSKYDVFIDQVIEEVKKKTDADPFSAGLEIYTTLDTNAQDYVDDVMNNKVVNFPNDKFQAGLVVVDNETGGIQAIGGGRNRVSGGLNFATNMRRQPGSTIKPILDYGPAIENLKWSTGQPLKDEEYHYSNGTPIRNFGRNYKGWVSAREALGRSLNIPALKAFQATGADKAKEFATGLGLKLDEEDGEAYSESYSIGGFRTGVTPLQMAGAYSAFANEGMYNAPHTVTKVKFPDGTEIDLTPKPKRTMQDYTAFMMTDMMKSVVNESYGTARAVRTPGLEIAGKTGTSNFSAADKQRYNIPDAGEKDVWFNGFTPNYTISVWTGYETPKDGYILSPNETGMAKNIFKHVITHISEGKPKGSFKQPDSVVERSVEKPTGKDLKRPSGSTPSSLITKEYFVRGTAPTKVSQTFVKKEKEEKKEDKKENKKEKKDNKDVKPKITASYSGGAISVNWSASNAASDTTFTVTMSSPNGSEQLASGAGAGGKTISNPAPGATYSFTVTTNTGESASSSVKVPDSSDQATEDDSTKPEDDGTTDDNQNEDNSNTDQNNGSDQGDDSSTQPDDNQNNNNGNNNGSNNGSNNGGNNSGNTDNNNNDSGNANDGNSGNNSNNGGTTTPPADNGGSDSGSQTPQTPATPSTPATPATPQQEPTTEN
>NZ_CP041066.1|WP_029325128.1|1914805_1915306_+|hypothetical-protein
MLPIEVPSHFICEPFYSKEDRVLEVDEKNGRNYFAYDILYDVHKETKTPWRDVQKNIRPFFEKWETQREELYTLFSVRKAKEAAPCMKQAAAMYISLLFWINGQPVRRLNRLQEDIADLTYKPINCAERLMFLLQRVSSYQAYIQLTELFNELRKQYAKMLILHKK
>NZ_CP041066.1|WP_064471477.1|1914147_1914819_+|endonuclease-III
MLTLKQIRQCLDAMAEMFPDAHCELNHRNPFDLVIAVALSAQCTDALVNRVTADLFKKYQTPEDYLAVSLEELQQDIRSIGLYRNKAKNIQKLCRMLIDEYGGEVPTDRDELTNLPGVGRKTANVVVSVAFGVPSIAVDTHVERVSKRLGICRWKDSVLEVEKTLMRKIPKDEWSVTHHRLIFFGRYHCKAQSPQCHVCPLLDLCREGKKRMKGKEKKTDVTD
>NZ_CP041066.1|WP_016763459.1|1913299_1914007_+|DnaD-domain-containing-protein
MKKETLIEWFEQGTVSIPKLLFNHYSDLGMNETEFMTLMHIYVSIEGGEGFPTPNELAAKMSISSAVCMDTLRALIQRGFLSIEQDQQQNALICERYSLKPLWEKLIHHMMQETREVEKSEEEQEELNLYTMFEKEFGRALSPFECETLAMWIDQDHHDPIIIKAALRESVMSGKLNFRYIDRILFEWKKNGIQTIDQARKHSQKFRQNQQPKKLSSVNPSQSTSAIPFFNWLEQ
>NZ_CP041066.1|WP_029325133.1|1923437_1924523_+|spore-coat-protein
MKQKEIPQYALFVNVKDLKEMHRDIWSEEVVQATMKFNKKRYDIDLLLRGSHIRKMKKKSYFIEFYSPKIFQHSKEIHLNAEYKDPSLMRNKLSLDFFSSLDVLSPQSQFINLTINGKNEGIYLQLESVDELFLKKRNLADGSIFYAVDGDANFSLMSDLDKKPKTSLLSGYEDKVVKQGDKEKLEQFIFNVNTWTNTEFEQNIEKYLNVDRYLSWLVGIICMQNYDGFVHNYALYRNHDSGRFELIPWDYDATWGRDVNGKVMEGDYVRAQGFNTLTARLLAVDGIKKRYIKKMNNVLNNQFTVEYMKPIVYQMHEELKPYILKDPYVKNNIEQFYEEPAFILSFIKDRTAYIKNNLLTF
>NZ_CP041066.1|WP_029325134.1|1924653_1925805_+|hypothetical-protein
MENYYYYYGQNQGQDSNPNRKRSHSKNANRPDKGYSSQFKPLKGRMVTVYRGGPESKTGYLLDVQSDYLILAVENDNNNNNDENNNEGNSNQNNQSNQNNQNNQQEYTVVYYHLSHVKSITEDAMSNSAQTFTGFDNEGTLELYRGKTFASTLSLLKSKYVQINQGGPEKKAGQLLDVLGSSESAYLVLLSEDDGIVYINVEHVKSISEYQNNNNNNNNNNIQMNNQFATNQEPTYMKSKNFNNLFTHLSHKWVSINGGGPEAVEGVLVQSRNGTFTLVQDNQVLRLQPRHVKTICVGAKGSFKQNNNQDDEQKEENTNTEDGGSTEGVPEGRTGRSRRTGSHSSGKSRRTGSHSSGKSRRTGSHSSASREQVIQTKNYRWKA
>NZ_CP041066.1|WP_029325135.1|1925869_1926532_+|hypothetical-protein
MSINRYINKIVEVDISGKTNFIGRLVDLGLDVMILYNGHDYLYIPLLHMHRLREVSEEDYTVLREIEENLIEESQRISYRNILQQAKGKFIEIYVTGGKSLHGYITSVLNDYLVFYSPVYKNVFVSLHHLKWLTPYSNELTPYSLSDKELPVRPASAPFVRNFEEQLKKYENQLVVLDLGDQSEKIGVLKEVSNNIVELITANGESMYWKLAHVKSVHLP
>NZ_CP041066.1|WP_029325136.1|1926888_1928034_+|PLP-dependent-transferase
MKIETLLVRSGVGRDPSTGSITTPIYQASTFAHPALGQSTGFDYARTANPTRTALEEAIAALEKGEVGVAFASGMAGVMAVLALFKNGDHLIVSEDLYGGTYRVLNEIFSEQGITVSYVNTAHLEQVKDALRPNTKALFIETPTNPMMHVTDLPEAIALAKQHDLLTIVDNTFMSPYYQRPLELGADIVIHSASKYIGGHNDVVAGLVVARCSSLGEKIRFYQNAAGAILGPQDSWLLLRGVKTLALRMEKHNENALEIANWLTAHDLVEKVYYPGLETHPGYEIMKKQATGFGGMISFAVSHPDIVSTLLENVKVITFAESLGGVESLMTFPARQTHADIPEEIRNRVGVTNCLLRLSVGIEHADDLIKDLKEAFDAYQQ
>NZ_CP041066.1|WP_013056123.1|1928017_1929199_+|PLP-dependent-transferase
MHTNNNKHRFGTNLIHANTGIDGHFGAVNVPIYQVSTFNQEDETNNGRYDYSRSGNPTREALENTIAQLENGYAGFAFSSGMAAISSVLSIFESGDEILVSHDTYGGTYRVLTRLFSKFGIKTTFVDTTKVEKVEEAITKDTRAIYIESPSNPFLQVTDIKAVASLAKERNLLTIVDNTFLTPYLQQPIDLGVNIVIHSATKYISGHSDVIGGLVVVSDEKLAEEVKFVQNAFGAILGPQDCFLLLRGIKTLKVRLDQQLKTALQFAKWLEEQSLVSCVYYPGLESHPDHKLISEQANGYGAMISFQVQDEKVARHILQGVKLASIGVSLGAVESILTHPATMSHASIPKEVREEKGITDSLLRLSVGLEEFEDLKQDFDAVFQSLEEKALIK
>NZ_CP041066.1|WP_140456695.1|1929234_1929501_-|hypothetical-protein
MTSEHLLAAYQTLWLNRSFASKQAMTSEDQLHEAIMKDLKDEMTHPRVRQTPHVKYHLGIKRILNSSLSSDEKIALTFLYTNLLDSCI
>NZ_CP041066.1|WP_013056125.1|1929563_1930223_-|SIMPL-domain-containing-protein
MQHSYFPYEPTQQLRVDTQNREIKVIGEGSVSAVPNEISMTIGTRTENRDVQEALKENSAVSNTLLQEIKNLGINDQQIETASFTINPKYDYSDGKSTLTGYEVQHLFRVRVQDVKQAGDVYNATFSSGANVAQDLQFHVTNDDKYEQEAISKALLNAKEKAFTIANTLQLPINQIPILIEEGSVYQSSGSSPKLLAASPPIQAQSLTVSASVKVTYTY
>NZ_CP041066.1|WP_013056127.1|1930455_1931934_-|sodium/proline-symporter-PutP
MDIGVYISLGIYFVGMLGIGWYAYTKTTEDVAGYMLGGRGLGPAVTALSAGASDMSGWMLMGLPGSMYVTGLSSVWLAVGLSIGAYLNYLILAPRLRTYTEVANDSITIPDFFENRFGDHAKVLRTVSAIVIFIFFTLYTSAGMVSGGRLFESAFSLNYQIGLFVTASVVIAYTLFGGFLAVSLTDFVQGVIMFLALVLVPIVAFTNVGGVNTTMDIVQDINPAYLDIFKGTTVLGIISFLAWGLGYFGQPHIIVRFMAISSVKELKPARRIGMSWMIISIIGAMLTGLVGIAYVEKTGMKLADPETIFIKFADILFNPLITGFLYAALLAAIMSTISSQLLVTASSVTEDFYKTFFRRKASDKELVTVGRAAVLGVAIIGILLSLKPSDTILGLVGYAWAGFGSAFGPAILLSLYWKRMTRWGALAGMIVGAATVLIWVNTPLKDALYEMIPGFFLSLLAVIIVSLLTKKPSNDVQNQFIEMKEILIKESK
>NZ_CP041066.1|WP_013056128.1|1932226_1932772_-|YhcN/YlaJ-family-sporulation-lipoprotein
MKKSFLFVVGCMTTLSLFGCSTADQGKDGVIDDDTVRNVTYENGNNKTKMNDVNDTQDVQRNEKEQYNQSGGMRVADVAADRIVALKNVKDANVIVTDHTAYVAAVLDDNKEGNLTKDMEHKIAHEVRKADGSVHRVFVSTNPDFVNRMNGYVDKLQTGKPVSGLFNEFSEVVRRVFPNSR
>NZ_CP041066.1|WP_013056130.1|1933337_1933541_+|cold-shock-protein
MATTGTVKWFNSEKGFGFIEVPGENDVFVHFSAIQSEGFKTLEEGQKVEFEIVEGQRGPQAENVVKL

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Crispr_ID: NZ_CP041066_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041066_6

2634324-2634413

Orphan

Consensus_repeat	Method
TCAAATGCAGCCGCCAAGCGGTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041066_6

>merge|NZ_CP041066|6|2634324-2634413|CRISPRCasFinder
TCAAATGCAGCCGCCAAGCGGTTCATCGAACGGCGGTCAAATGCCGGGCGGTTCGTCCAATAATGGTCAAATGCAGCCGCCAAGCGGTTC

>NZ_CP041066|6|4|2634324-2634413|CRISPRCasFinder
TCAAATGCAGCCGCCAAGCGGTTC	ATCGAACGGCGGTCAAATGCCGGGCGGTTCGTCCAATAATGG
TCAAATGCAGCCGCCAAGCGGTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041066.1\|WP_029321460.1\|2625801_2627226_+\|phospholipase-D-family-protein	unknown	unknown	gnl\|CDD\|197210
NZ_CP041066.1\|WP_078081758.1\|2637976_2639356_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP041066.1\|WP_140456781.1\|2628902_2629307_+\|CidA/LrgA-family-holin-like-protein	unknown	unknown	gnl\|CDD\|167253
NZ_CP041066.1\|WP_078081757.1\|2627889_2628171_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|153095
NZ_CP041066.1\|WP_013056829.1\|2643534_2644608_+\|sulfate/molybdate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224043
NZ_CP041066.1\|WP_029321493.1\|2642648_2643515_+\|sulfate-ABC-transporter-permease-subunit-CysW	unknown	unknown	gnl\|CDD\|226665
NZ_CP041066.1\|WP_013056814.1\|2629276_2629969_+\|LrgB-family-protein	unknown	unknown	gnl\|CDD\|377236
NZ_CP041066.1\|WP_013056821.1\|2636268_2637156_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|224131
NZ_CP041066.1\|WP_013056825.1\|2640235_2640388_+\|Fur-regulated-basic-protein-FbpA	unknown	unknown	gnl\|CDD\|315692
NZ_CP041066.1\|WP_029321467.1\|2631266_2631743_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041066.1\|WP_029321458.1\|2625362_2625629_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041066.1\|WP_013056822.1\|2637300_2637975_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP041066.1\|WP_029321462.1\|2627322_2627853_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|226489
NZ_CP041066.1\|WP_013056824.1\|2639728_2639893_+\|YezD-family-protein	unknown	unknown	gnl\|CDD\|378371
NZ_CP041066.1\|WP_013082952.1\|2641799_2642636_+\|sulfate-ABC-transporter-permease-subunit-CysT	unknown	unknown	gnl\|CDD\|131194
NZ_CP041066.1\|WP_029321464.1\|2628277_2628709_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP041066.1\|WP_013056817.1\|2631811_2632384_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP041066.1\|WP_140456783.1\|2640640_2641705_+\|sulfate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224529
NZ_CP041066.1\|WP_029321473.1\|2634910_2635876_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NZ_CP041066.1\|WP_013056815.1\|2630240_2631113_+\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132912

Protein	Function_ID	Function_description	E-value
NZ_CP041066.1\|WP_029321460.1\|2625801_2627226_+\|phospholipase-D-family-protein	gnl\|CDD\|197210	cd09111, PLDc_ymdC_like_1, Putative catalytic domain, repeat 1, of Escherichia coli uncharacterized protein ymdC and similar proteins. Putative catalytic domain, repeat 1, of Escherichia coli uncharacterized protein ymdC and similar proteins. In Escherichia coli, there are two genes, f413 (ybhO) and o493 (ymdC), which are homologous to gene cls that encodes the Escherichia coli cardiolipin (CL) synthase. The prototype of this subfamily is an uncharacterized protein ymdC specified by the o493 (ymdC) gene. Although the functional characterization of ymdC and similar proteins remains unknown, members of this subfamily show high sequence homology to bacterial CL synthases, which catalyze the reversible phosphatidyl group transfer between two phosphatidylglycerol molecules to form CL and glycerol. Moreover, ymdC and its similar proteins contain two HKD motifs (H-x-K-x(4)-D, where x represents any amino acid residue) that characteriszes the phospholipase D (PLD) superfamily. The two motifs may be part of the active site and may be involved in phosphatidyl group transfer.	9.1222e-62
NZ_CP041066.1\|WP_078081758.1\|2637976_2639356_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.87351e-61
NZ_CP041066.1\|WP_140456781.1\|2628902_2629307_+\|CidA/LrgA-family-holin-like-protein	gnl\|CDD\|167253	PRK01658, PRK01658, CidA/LrgA family holin-like protein.	2.41147e-35
NZ_CP041066.1\|WP_078081757.1\|2627889_2628171_-\|hypothetical-protein	gnl\|CDD\|153095	cd04706, PLA2_plant, PLA2_plant: Plant-specific sub-family of Phospholipase A2, a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent. Enzymatically active PLA2 cleaves the sn-2 position of the glycerol backbone of phospholipids; secreted PLA2s have also been found to specifically bind to a variety of soluble and membrane proteins in mammals, including receptors. As a toxin, PLA2 is a potent presynaptic neurotoxin which blocks nerve terminals by binding to the nerve membrane and hydrolyzing stable membrane lipids. The products of the hydrolysis cannot form bilayers leading to a change in membrane conformation and ultimately to a block in the release of neurotransmitters. PLA2 may form dimers or oligomers. This sub-family does not appear to have a conserved active site and metal-binding loop.	1.03294e-05
NZ_CP041066.1\|WP_013056829.1\|2643534_2644608_+\|sulfate/molybdate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224043	COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism].	2.59702e-164
NZ_CP041066.1\|WP_029321493.1\|2642648_2643515_+\|sulfate-ABC-transporter-permease-subunit-CysW	gnl\|CDD\|226665	COG4208, CysW, ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism].	2.70454e-146
NZ_CP041066.1\|WP_013056814.1\|2629276_2629969_+\|LrgB-family-protein	gnl\|CDD\|377236	pfam04172, LrgB, LrgB-like family. The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control of murein hydrolase activity and penicillin tolerance.	1.63516e-76
NZ_CP041066.1\|WP_013056825.1\|2640235_2640388_+\|Fur-regulated-basic-protein-FbpA	gnl\|CDD\|315692	pfam13076, Fur_reg_FbpA, Fur-regulated basic protein A. This family of proteins is regulated by the ferric uptake regulator protein Fur. This family does not regulate the lutABC operon encoding iron sulfur-containing enzymes necessary for growth on lactate.	9.42134e-08
NZ_CP041066.1\|WP_029321473.1\|2634910_2635876_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	2.50985e-99
NZ_CP041066.1\|WP_140456783.1\|2640640_2641705_+\|sulfate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224529	COG1613, Sbp, ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism].	0
NZ_CP041066.1\|WP_029321462.1\|2627322_2627853_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|226489	COG3981, COG3981, Predicted acetyltransferase [General function prediction only].	6.79148e-55
NZ_CP041066.1\|WP_013056824.1\|2639728_2639893_+\|YezD-family-protein	gnl\|CDD\|378371	pfam10055, DUF2292, Uncharacterized small protein (DUF2292). Members of this family of hypothetical bacterial proteins have no known function.	2.45935e-11
NZ_CP041066.1\|WP_013082952.1\|2641799_2642636_+\|sulfate-ABC-transporter-permease-subunit-CysT	gnl\|CDD\|131194	TIGR02139, permease_CysT, sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions].	3.2288e-143
NZ_CP041066.1\|WP_029321464.1\|2628277_2628709_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.75984e-17
NZ_CP041066.1\|WP_013056817.1\|2631811_2632384_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	2.2175e-41
NZ_CP041066.1\|WP_013056815.1\|2630240_2631113_+\|STAS-domain-containing-protein	gnl\|CDD\|132912	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.	9.66308e-41
NZ_CP041066.1\|WP_013056822.1\|2637300_2637975_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.02357e-78
NZ_CP041066.1\|WP_013056821.1\|2636268_2637156_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	2.50371e-163

>NZ_CP041066.1|WP_013056817.1|2631811_2632384_-|GNAT-family-N-acetyltransferase
MIQVKDIYGNLPTLETERLRLRKVTKKDVRDMFEYASNEKVSRYVNWEKHRKLQDTKEFVSFVLKQYSNQSISPWAMEIKALKKCIGTIDFVTWNPTHRIAEIGYAISEAYWNKGFVTEAAEKVIAFGFEEMDLVRIQARCFIENAASEKVMKKIGMSYEGTIRKAMFIKGAHQDLKLYSILREEYTRNA
>NZ_CP041066.1|WP_029321467.1|2631266_2631743_-|hypothetical-protein
MLEQAIQHLDLSAHGLWFPITASLCLFILAFVLFKRKLTWRDFYITFSVVGFVGWLCDVIITRVFNVIDLGDPKVTGLGDILSYTFIPPSLSVLFLTYLTAKNKWVLSLLFCAGSLLIEYGMIKSGYMHLNGWFFIYSIVVYLLVYAFVLPWHIAFIK
>NZ_CP041066.1|WP_013056815.1|2630240_2631113_+|STAS-domain-containing-protein
MKEELVYIGKKIIEHKYNLSEKLAERLDATHPLSTEELKEKKILKWRVSIMEYFGRVLFEEQEAVLKLVKEWALATGKYAVEKNIPLEKALGTLPIYRSVIWDVFTRELEEHQFAAITMLHVSERIDPLLDTVTCIFGQIYDEHNRYMMNLAYTSLEELSVPLVPVTKGIAIMPIIGEIDTHRSQVIMETCLKKGTSLQLAYLILDISGVVIIDTMVADNLFKIHQALKLVGVEAIITGIRPEIAQTVVKLGINFNQIKTEANLEAALLKIGFRRSEEHRPTHLSSRRIK
>NZ_CP041066.1|WP_013056814.1|2629276_2629969_+|LrgB-family-protein
MQEFFIAVFIIVATVALYLVMAKVYVRFSYPILIPVLTTTIFVILLLLTFHVSYDEYMIGGKWINSLLGPAVVALAYPLYKQREMLVKYSVPIIGGVFVGLFAGMISGLVFAEVFGIDRSLILSIIPKSITTPVAIQIATGLGGVPSMTVVFVMIAGFSGVILGPLLLKWIRIKSSLGKGIALGSASHALGTSKAFEYGELTVSMSSVSMTLSAVLGSVFGPIVVWLFQV
>NZ_CP041066.1|WP_140456781.1|2628902_2629307_+|CidA/LrgA-family-holin-like-protein
MKVIRIILQIAILYAFSMIGEAVHHMLHLPIPGSIIGLILMLICLMCKIVPIKAIEDGASFLLSFLPLLFIPAMAGVMNYPSLLSSSGAVLFLIIVLSTIVTMAAAGIASQLLEKKANKRKEKQQCKNSLSRSL
>NZ_CP041066.1|WP_029321464.1|2628277_2628709_-|MarR-family-transcriptional-regulator
MQEKNSIELIEYELTTFIRRAVYLDNSENKIGNLERSAYLLLRQLDEFGPARVKELAEAFKLDISTLSRQAAALENKQLISRSSDPSDGRVSLFDITARGKRMLQSDKQMRLERYHSMLKKWSSEEKELFGKLLMRMNDAFID
>NZ_CP041066.1|WP_078081757.1|2627889_2628171_-|hypothetical-protein
MSVPNKRKATPCLFPGYKWCGPGCSGPGCPVNDVDCCCKYHDLCYEDYGSCRSCDEQFLNCLCSKANPYSLKGRQAYAMYTYMRLKLALKQYD
>NZ_CP041066.1|WP_029321462.1|2627322_2627853_+|GNAT-family-N-acetyltransferase
MEAAVLMKPDAAYKKAYMSFYHEWKASGEKMIPWVIAKDPTHFEEMIQELINAEKGIGLKKGYVPDSTYWLMHNERVIGVVNIRHALSELLRNSGGHIGYGIRPSERKKGYAKLLLKLSLQEIRKLGVQRALVVCDDWNIASRQTILANGGIQDEDYIEENGAVVQRFWIYTDKIV
>NZ_CP041066.1|WP_029321460.1|2625801_2627226_+|phospholipase-D-family-protein
MIKIAFKGLLIILSLYILYVVIAAVVLFYVPLKTGEETTSIKPDSFFGHSESTDRVRLLEDGYEAGRVRIQMIQEAEKSIDIAYYSIGKGESTDLIMAALFKAADRGVYTRVLLDGIANGLRGNRRGVLYALASHPNIEVKYYEPFQLFKPWAWQNRMHDKIMIVDGQLGIIGGRNIGDKYLANKPPPDFVYDRDVFITNSKHKQDSVIVQMQNYINELWAHPYTKKAFYHLTQYQVDQGKRMKALLLQQYGKAKQVGETFATPKINWNASTVSTKCVSFIHNPIERFNKRPFMWKTLINLAEGANRSVLIQSPYVVPTNAMSKYTAIKKKRDVQWTLLTNSVTSTPNVLAFSGYISMRDTIMKTGVKLYEYQGPYSIHAKSVIYDQRLSAVGSFNLDSRSTFLNNESMVIIDSQKFAKELTMAMENKIDKSILVANHKRWIKSPDVQRKEEPVMKRTFLYALAKVTRFFKEFI
>NZ_CP041066.1|WP_029321458.1|2625362_2625629_-|hypothetical-protein
MEEYSFRFHITDSYPLHNENDKIEAVVRTKIKHADRGCLYEGYLRVHITKVGVFPVAKDIAEAISVRSLRQQLAAELKRYVRPHRNFL
>NZ_CP041066.1|WP_029321473.1|2634910_2635876_+|glycosyltransferase-family-2-protein
MSSIVKYSIVVPVYNEEEVIHETYRRLTEVMRSTKEAYELLFVNDGSKDRTAEIIKEYSEQDPAVVLLDFARNFGHQIAITAGMDYARGEAVVVIDADLQDPPELILEMIEKWKQGFDVVYAKRTKRKGETYFKKQTAAMFYRFLRAMTDIDIPLDTGDFRLLDRKVCDQMNSIQEKNRFVRGLVSWVGFKQIAVEYERDERLAGESKYPLKKMLKLSMDGITSFSYKPLKLASYAGVTLSGIGFIYLLVVMYLKLFTDSTITGWSSLIVIQLFFSGIILIILGMIGEYIGRIYDETKNRPLYIVREKYQLETREEVSLRD
>NZ_CP041066.1|WP_013056821.1|2636268_2637156_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MTIKKAVIPVGGLGTRFLPATKAQPKEMLPIVDKPAVQYIVEEAVKSGIESIIFITGRNKKSIEDHFDKSIELEQMLEEKHKFDMLKEVQTISSMASIHYIRQKEPLGLGHAILCAEQFIGDEPFAVLLGDDIMTSEEPALKQMIQAYETTNQSVIGVQKVDVEEVSKYGIIQPKNKSGSLHEVSDLIEKPSIEQAPSTIAVMGRYILNPSIFSYLKTIERGVGNELQLTDALRVVCEKERLFALELEGQRFDIGDKIGYMKAMVEVALKRKDLRQTFLSYLEGIVEKERANNFS
>NZ_CP041066.1|WP_013056822.1|2637300_2637975_+|response-regulator-transcription-factor
MIQILVADDDQHIRELISLYLENQGFKIIKAADGEEAWAKMEEFRIDLAVVDIMMPFKDGWELTKEIKEYFDIPVLMVTARGESHDKLKGFDIGTDDYVVKPFDPQEMVARVKALLRRYRVEANNVIYMGNIKLDRTKLEMSAGETSEQLPLKEFELLFTLVSSPGKIFTRDQLIQLIWGYDYEGDERTVDVHIKRLRERLNHMKNVGMEIKTIRGLGYRAEGC
>NZ_CP041066.1|WP_078081758.1|2637976_2639356_+|HAMP-domain-containing-histidine-kinase
MKSIYVKLVLSFIITILLSVVITVVVTTFLSKQKLEMRLGQDMVKMGEDFIDLYGAEDSDKAARFLSNSSFIHFSFIIIDDQHEEKVLGQPGPPIPITPQEVDQVLDGKRYSNLNEEKGDRPQPNVVGLPFKENGRSYALFIQSHPQRQFSVIQDVQNIQLITILLVGIVLFAYVSTIIIKPIKRLSTAMKVVGQGEYNVQVEHATNDEIGLLTKNFNQMTKELNKIETMRQEFIASVSHEIQSPLTSIRGFSAALKDDIVSEDKKIQYLTIIEKESTRLSQLSSNLLKLASLDSEHQTLTLQQYRLDEQIRHVVMALEPQWTKKNIEIDLDLSNVQMEADKDLLEQVWLNLVTNAIKYTPENGLVKISIHQKNEEIDVEIKDNGIGIAEEDQKYIFESFYKVDKSRTLKGSGLGLAITKKIVRLHEGAIRVESKKEQGSIFTVTLPIQKNRTKKDSSV
>NZ_CP041066.1|WP_013056824.1|2639728_2639893_+|YezD-family-protein
MASITQEKLDYIVKLLTEINYGSVLITLHDGQITQVDSTEKNRFLAKSKVASHK
>NZ_CP041066.1|WP_013056825.1|2640235_2640388_+|Fur-regulated-basic-protein-FbpA
MENLLRAAVRQRKQYLIEELLKKGIYKKENHHLFELTLSDLEKEYQARSK
>NZ_CP041066.1|WP_140456783.1|2640640_2641705_+|sulfate-ABC-transporter-substrate-binding-protein
MKKKAVQFLMVLTALLVVLAGCGNGKSTETAGKDSSVSKNGSKKSVELLNVSYDPTRELYQEFNKSFASYWKDKTGQDVTIKQSHGGSGKQGRAVIDGLEADVVTLALAYDIDEIAQTRQLLNKDWEKELAHNSTPYTSTIVFLVRKGNPKGIKDWDDLTKKGTSVITPNPKTSGGARWNYLAAWAYAKNKYNGDNKKIEDFMSKLYGNVEVLDSGARGATTTFVERGIGDVLIAWENEAYLSLNELGKDKFEIVTPSLSILAEPPVAVVDKVAEKKGTTKVAKAYLKYLYTEKGQEIAAENYYRPRNEKVLEKHKDQFPSLNLVTIKDFGGWKKAQETHFNDGGTFDQIYQPK
>NZ_CP041066.1|WP_013082952.1|2641799_2642636_+|sulfate-ABC-transporter-permease-subunit-CysT
MSVLQRQKKKKSILPGFGLSLGFTMFYASILVLFPLAMIFLNTASMGWSDFIKTVTDSRVVASYKLSFGAAFAAGIINVIFGTIIAWVLVRYHFPGKRFIDGLVDLPFALPTAVAGIALTTLYVPKGWIGQLFTFKIAFTPIGIIIALTFIGLPFVVRMVQPVLQNFNAEIEEASASLGASRMQTFRKVIFPELVPAILTGFSLSFARALGEYGSVVFIAGNMPMKTEITPLIIMTKLEQYDYAGATAIASVMLVVSFFLLLLINIIQWWTNRKFVHS
>NZ_CP041066.1|WP_029321493.1|2642648_2643515_+|sulfate-ABC-transporter-permease-subunit-CysW
MAGHVPMQHAKTNVELNHSSLKEPKVVRWLLTFIALAFLALFLVLPLITIFMTAFQKGWETYLAAITNPDALAAIKLTLIVVLITVPLNAVFGVVAAWLITKFDFKGKNLLITLIDLPFAVSPVIAGLVFILLFGAQGLFGEWLFNQDIKIVFAIPGIILATLFVTLPFVAKELIPLMQAQGSAEEEASLTLGASGFKTFFLVTLPNIKWGLLYGIILCNARAIGEFGAVSVVSGHIRGMTNTMPLHIEILYNEYQFAAAFAVASLMSVLAIFTLIVKNIIEWKAKHI
>NZ_CP041066.1|WP_013056829.1|2643534_2644608_+|sulfate/molybdate-ABC-transporter-ATP-binding-protein
MSIHIKHVSKNFGDFKALDSINIDIQTGELVALLGPSGSGKTSLLRIIAGLEHLDQGAILFDGKEITHVNPKERNVGFVFQHYALFRHMTVFDNVAYGLKVRPKKTRPSKADINKKVAELLQLVKLEPLANRYPSQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKDLRRWLRKLHNDFHITSIFVTHDQEEALDVADRIVVMNNGKIEQIGSPEEVYDHPNSPFVYDFLGNVNLFKGRIHKGRLKQGSFEMDVPEFSGRNEEAAVGYVRPHDIHLEKVNTSADAVSATVSHIHVIGPIVQIELKREDAEEFLEAELSKEHYKTLSLQVGDQVYVKPKQLKVFIPEDYSI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP041066_5	5.5\|1922957\|30\|NZ_CP041066\|CRT	1922957-1922986	30	NZ_CP041066.1	1719876-1719905	2	0.933

1. spacer 5.5|1922957|30|NZ_CP041066|CRT matches to position: 1719876-1719905, mismatch: 2, identity: 0.933

gtagaacggcgagaagaacggcgagaagaa	CRISPR spacer
gtagaacggcgagtagaacggcgagtagaa	Protospacer
************* *********** ****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041066_5	5.1\|1922768\|27\|NZ_CP041066\|CRT	1922768-1922794	27	MH572303	Microviridae sp. isolate SD_SC_50, complete genome	3216-3242	5	0.815
NZ_CP041066_5	5.1\|1922768\|27\|NZ_CP041066\|CRT	1922768-1922794	27	NZ_CP021083	Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence	252629-252655	6	0.778
NZ_CP041066_5	5.2\|1922813\|30\|NZ_CP041066\|CRT	1922813-1922842	30	NC_020894	Streptomyces hygroscopicus subsp. jinggangensis TL01 plasmid pSHJGH1, complete sequence	74772-74801	6	0.8
NZ_CP041066_5	5.2\|1922813\|30\|NZ_CP041066\|CRT	1922813-1922842	30	NC_017766	Streptomyces hygroscopicus subsp. jinggangensis 5008 plasmid pSHJG1, complete sequence	74773-74802	6	0.8
NZ_CP041066_5	5.2\|1922813\|30\|NZ_CP041066\|CRT	1922813-1922842	30	NZ_CP033582	Streptomyces sp. ADI95-16 plasmid pADI95-16a, complete sequence	223899-223928	6	0.8
NZ_CP041066_5	5.2\|1922813\|30\|NZ_CP041066\|CRT	1922813-1922842	30	MT771339	Gordonia phage Archimedes, complete genome	4082-4111	6	0.8
NZ_CP041066_5	5.2\|1922813\|30\|NZ_CP041066\|CRT	1922813-1922842	30	NZ_CP011665	Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence	410215-410244	6	0.8
NZ_CP041066_5	5.5\|1922957\|30\|NZ_CP041066\|CRT	1922957-1922986	30	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	2455556-2455585	6	0.8
NZ_CP041066_5	5.5\|1922957\|30\|NZ_CP041066\|CRT	1922957-1922986	30	NC_017078	Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC1, complete sequence	230927-230956	6	0.8
NZ_CP041066_5	5.2\|1922813\|30\|NZ_CP041066\|CRT	1922813-1922842	30	MT498059	Gordonia phage Doggs, complete genome	5031-5060	7	0.767
NZ_CP041066_5	5.2\|1922813\|30\|NZ_CP041066\|CRT	1922813-1922842	30	NZ_CP030828	Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence	179583-179612	7	0.767
NZ_CP041066_5	5.2\|1922813\|30\|NZ_CP041066\|CRT	1922813-1922842	30	NZ_CP032297	Rahnella aquatilis strain ZF7 plasmid pRAZF7, complete sequence	334657-334686	7	0.767
NZ_CP041066_5	5.2\|1922813\|30\|NZ_CP041066\|CRT	1922813-1922842	30	NZ_CP036488	Rahnella aquatilis strain MEM40 plasmid pMEM40-1, complete sequence	232621-232650	7	0.767
NZ_CP041066_5	5.2\|1922813\|30\|NZ_CP041066\|CRT	1922813-1922842	30	NZ_CP033583	Streptomyces sp. ADI95-16 plasmid pADI95-16b, complete sequence	40511-40540	7	0.767
NZ_CP041066_5	5.2\|1922813\|30\|NZ_CP041066\|CRT	1922813-1922842	30	NZ_CP034838	Rahnella aquatilis strain KM12 plasmid pKM12v1, complete sequence	298310-298339	7	0.767
NZ_CP041066_5	5.2\|1922813\|30\|NZ_CP041066\|CRT	1922813-1922842	30	NZ_CP034839	Rahnella aquatilis strain KM25 plasmid pKM12v2, complete sequence	298310-298339	7	0.767
NZ_CP041066_5	5.2\|1922813\|30\|NZ_CP041066\|CRT	1922813-1922842	30	NZ_CP034837	Rahnella aquatilis strain KM05 plasmid pKM05, complete sequence	260295-260324	7	0.767
NZ_CP041066_5	5.2\|1922813\|30\|NZ_CP041066\|CRT	1922813-1922842	30	NZ_CP025188	Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence	4756-4785	7	0.767
NZ_CP041066_5	5.5\|1922957\|30\|NZ_CP041066\|CRT	1922957-1922986	30	NZ_CP028521	Lelliottia sp. WB101 plasmid unnamed1	41326-41355	7	0.767
NZ_CP041066_5	5.5\|1922957\|30\|NZ_CP041066\|CRT	1922957-1922986	30	NZ_CP049247	Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed1, complete sequence	26634-26663	7	0.767
NZ_CP041066_5	5.5\|1922957\|30\|NZ_CP041066\|CRT	1922957-1922986	30	CP052165	Klebsiella pneumoniae strain F16KP0082 plasmid pF16KP0082-3, complete sequence	35479-35508	7	0.767
NZ_CP041066_5	5.5\|1922957\|30\|NZ_CP041066\|CRT	1922957-1922986	30	CP052145	Klebsiella pneumoniae strain F17KP0012 plasmid pF17KP0012-2, complete sequence	54679-54708	7	0.767
NZ_CP041066_5	5.5\|1922957\|30\|NZ_CP041066\|CRT	1922957-1922986	30	NZ_LR134255	Klebsiella aerogenes strain NCTC9644 plasmid 2, complete sequence	13872-13901	7	0.767
NZ_CP041066_5	5.5\|1922957\|30\|NZ_CP041066\|CRT	1922957-1922986	30	NZ_CP024977	Escherichia coli strain CV839-15 plasmid pCV839-15-p3, complete sequence	24671-24700	7	0.767
NZ_CP041066_5	5.5\|1922957\|30\|NZ_CP041066\|CRT	1922957-1922986	30	CP052205	Klebsiella pneumoniae strain F16KP0002 plasmid pF16KP0002-2, complete sequence	37596-37625	7	0.767
NZ_CP041066_5	5.5\|1922957\|30\|NZ_CP041066\|CRT	1922957-1922986	30	CP052496	Klebsiella pneumoniae strain B17KP0067 plasmid pB17KP0067-2, complete sequence	47399-47428	7	0.767
NZ_CP041066_5	5.5\|1922957\|30\|NZ_CP041066\|CRT	1922957-1922986	30	NZ_CP025885	Escherichia coli strain 503440 plasmid p503440_68, complete sequence	39239-39268	7	0.767
NZ_CP041066_5	5.5\|1922957\|30\|NZ_CP041066\|CRT	1922957-1922986	30	NC_020894	Streptomyces hygroscopicus subsp. jinggangensis TL01 plasmid pSHJGH1, complete sequence	74772-74801	7	0.767
NZ_CP041066_5	5.5\|1922957\|30\|NZ_CP041066\|CRT	1922957-1922986	30	NC_017766	Streptomyces hygroscopicus subsp. jinggangensis 5008 plasmid pSHJG1, complete sequence	74773-74802	7	0.767
NZ_CP041066_5	5.5\|1922957\|30\|NZ_CP041066\|CRT	1922957-1922986	30	NZ_AP019401	Klebsiella pneumoniae strain E013 plasmid pE013, complete sequence	122188-122217	7	0.767
NZ_CP041066_5	5.5\|1922957\|30\|NZ_CP041066\|CRT	1922957-1922986	30	CP052316	Klebsiella pneumoniae strain E16KP0093 plasmid pE16KP0093-1, complete sequence	93783-93812	7	0.767
NZ_CP041066_5	5.2\|1922813\|30\|NZ_CP041066\|CRT	1922813-1922842	30	NZ_CP016289	Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence	610559-610588	8	0.733
NZ_CP041066_5	5.2\|1922813\|30\|NZ_CP041066\|CRT	1922813-1922842	30	NC_004689	Mycobacterium phage Barnyard, complete genome	41517-41546	8	0.733
NZ_CP041066_5	5.2\|1922813\|30\|NZ_CP041066\|CRT	1922813-1922842	30	NZ_CP013558	Rhizobium phaseoli strain N841 plasmid pRphaN841a, complete sequence	9931-9960	8	0.733
NZ_CP041066_5	5.2\|1922813\|30\|NZ_CP041066\|CRT	1922813-1922842	30	NZ_CP033036	Agrobacterium fabrum strain 12D13 plasmid pAt12D13a, complete sequence	121201-121230	8	0.733
NZ_CP041066_5	5.2\|1922813\|30\|NZ_CP041066\|CRT	1922813-1922842	30	NZ_CP013506	Rhizobium sp. N1341 plasmid pRspN1341a, complete sequence	10961-10990	8	0.733
NZ_CP041066_5	5.2\|1922813\|30\|NZ_CP041066\|CRT	1922813-1922842	30	NZ_CP013569	Rhizobium phaseoli strain N771 plasmid pRphaN771a, complete sequence	12415-12444	8	0.733
NZ_CP041066_5	5.5\|1922957\|30\|NZ_CP041066\|CRT	1922957-1922986	30	NZ_CP013558	Rhizobium phaseoli strain N841 plasmid pRphaN841a, complete sequence	9931-9960	8	0.733
NZ_CP041066_5	5.5\|1922957\|30\|NZ_CP041066\|CRT	1922957-1922986	30	NZ_CP033036	Agrobacterium fabrum strain 12D13 plasmid pAt12D13a, complete sequence	121201-121230	8	0.733
NZ_CP041066_5	5.5\|1922957\|30\|NZ_CP041066\|CRT	1922957-1922986	30	NZ_CP013506	Rhizobium sp. N1341 plasmid pRspN1341a, complete sequence	10961-10990	8	0.733
NZ_CP041066_5	5.5\|1922957\|30\|NZ_CP041066\|CRT	1922957-1922986	30	NZ_CP013569	Rhizobium phaseoli strain N771 plasmid pRphaN771a, complete sequence	12415-12444	8	0.733
NZ_CP041066_5	5.5\|1922957\|30\|NZ_CP041066\|CRT	1922957-1922986	30	NZ_CP033082	Glutamicibacter nicotianae strain OTC-16 plasmid unnamed1, complete sequence	118347-118376	8	0.733
NZ_CP041066_5	5.5\|1922957\|30\|NZ_CP041066\|CRT	1922957-1922986	30	NC_014258	Pantoea vagans C9-1 plasmid pPag3, complete sequence	61506-61535	8	0.733
NZ_CP041066_5	5.5\|1922957\|30\|NZ_CP041066\|CRT	1922957-1922986	30	NZ_CP030828	Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence	179583-179612	8	0.733
NZ_CP041066_5	5.5\|1922957\|30\|NZ_CP041066\|CRT	1922957-1922986	30	NZ_CP028350	Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence	501094-501123	8	0.733
NZ_CP041066_5	5.5\|1922957\|30\|NZ_CP041066\|CRT	1922957-1922986	30	NC_004689	Mycobacterium phage Barnyard, complete genome	41517-41546	8	0.733
NZ_CP041066_5	5.7\|1923041\|30\|NZ_CP041066\|CRT	1923041-1923070	30	KU064779	Pseudomonas phage PPPL-1, complete genome	30211-30240	8	0.733
NZ_CP041066_5	5.5\|1922957\|30\|NZ_CP041066\|CRT	1922957-1922986	30	NZ_CP016289	Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence	610559-610588	9	0.7

1. spacer 5.1|1922768|27|NZ_CP041066|CRT matches to MH572303 (Microviridae sp. isolate SD_SC_50, complete genome) position: , mismatch: 5, identity: 0.815

gtacttcgggaagaacggcgagaagaa	CRISPR spacer
ctacttcgggaagatcggcgagatgtc	Protospacer
 ************* ******** *

2. spacer 5.1|1922768|27|NZ_CP041066|CRT matches to NZ_CP021083 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence) position: , mismatch: 6, identity: 0.778

gtacttcgggaagaacggcgagaagaa	CRISPR spacer
tgacttcgggaagatcggcgtgaaggt	Protospacer
  ************ ***** ****.

3. spacer 5.2|1922813|30|NZ_CP041066|CRT matches to NC_020894 (Streptomyces hygroscopicus subsp. jinggangensis TL01 plasmid pSHJGH1, complete sequence) position: , mismatch: 6, identity: 0.8

gtagaacggcgagaagagcggcgagaagaa	CRISPR spacer
ggacgacggcaagaagagcggcgagaagcc	Protospacer
* * .*****.*****************

4. spacer 5.2|1922813|30|NZ_CP041066|CRT matches to NC_017766 (Streptomyces hygroscopicus subsp. jinggangensis 5008 plasmid pSHJG1, complete sequence) position: , mismatch: 6, identity: 0.8

gtagaacggcgagaagagcggcgagaagaa	CRISPR spacer
ggacgacggcaagaagagcggcgagaagcc	Protospacer
* * .*****.*****************

5. spacer 5.2|1922813|30|NZ_CP041066|CRT matches to NZ_CP033582 (Streptomyces sp. ADI95-16 plasmid pADI95-16a, complete sequence) position: , mismatch: 6, identity: 0.8

gtagaacggcgagaagagcggcgagaagaa	CRISPR spacer
ctggtacaccgagaagagcgccgagaagaa	Protospacer
 *.* **. *********** *********

6. spacer 5.2|1922813|30|NZ_CP041066|CRT matches to MT771339 (Gordonia phage Archimedes, complete genome) position: , mismatch: 6, identity: 0.8

gtagaacggcgagaagagcggcgagaagaa	CRISPR spacer
gaagtcgggcgagaagggcggcgagaagga	Protospacer
* **   *********.***********.*

7. spacer 5.2|1922813|30|NZ_CP041066|CRT matches to NZ_CP011665 (Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence) position: , mismatch: 6, identity: 0.8

gtagaacggcgagaagagcggcgagaagaa	CRISPR spacer
ctggtacaccgagaagagcgccgagaagaa	Protospacer
 *.* **. *********** *********

8. spacer 5.5|1922957|30|NZ_CP041066|CRT matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 6, identity: 0.8

gtagaacggcgagaagaacggcgagaagaa	CRISPR spacer
agagaacgacgagaagaacggcgaaacgca	Protospacer
. ******.***************.* * *

9. spacer 5.5|1922957|30|NZ_CP041066|CRT matches to NC_017078 (Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC1, complete sequence) position: , mismatch: 6, identity: 0.8

-gtagaacggcgagaagaacggcgagaagaa	CRISPR spacer
tgccgag-ggcgagaagaacagcgagaaaaa	Protospacer
 *. **. ************.*******.**

10. spacer 5.2|1922813|30|NZ_CP041066|CRT matches to MT498059 (Gordonia phage Doggs, complete genome) position: , mismatch: 7, identity: 0.767

gtagaacggcgagaagagcggcgagaagaa	CRISPR spacer
cgcgaacgacgcgaagagcggcgagaaggt	Protospacer
   *****.** ****************.

11. spacer 5.2|1922813|30|NZ_CP041066|CRT matches to NZ_CP030828 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence) position: , mismatch: 7, identity: 0.767

gtagaacggcgagaagagcggcgagaagaa	CRISPR spacer
tgagaatggcgagaagagcggcgagcactt	Protospacer
  ****.****************** *

12. spacer 5.2|1922813|30|NZ_CP041066|CRT matches to NZ_CP032297 (Rahnella aquatilis strain ZF7 plasmid pRAZF7, complete sequence) position: , mismatch: 7, identity: 0.767

gtagaacggcgagaagagcggcgagaagaa	CRISPR spacer
ccagaacgccgagaagagtggcgagcaaag	Protospacer
 .****** *********.****** *.*.

13. spacer 5.2|1922813|30|NZ_CP041066|CRT matches to NZ_CP036488 (Rahnella aquatilis strain MEM40 plasmid pMEM40-1, complete sequence) position: , mismatch: 7, identity: 0.767

gtagaacggcgagaagagcggcgagaagaa	CRISPR spacer
ccagaacgccgagaagagtggcgagcaaag	Protospacer
 .****** *********.****** *.*.

14. spacer 5.2|1922813|30|NZ_CP041066|CRT matches to NZ_CP033583 (Streptomyces sp. ADI95-16 plasmid pADI95-16b, complete sequence) position: , mismatch: 7, identity: 0.767

gtagaacggcgagaagagcggcgagaagaa	CRISPR spacer
ggacgacgacaagaagagcggcgagaagcc	Protospacer
* * .***.*.*****************

15. spacer 5.2|1922813|30|NZ_CP041066|CRT matches to NZ_CP034838 (Rahnella aquatilis strain KM12 plasmid pKM12v1, complete sequence) position: , mismatch: 7, identity: 0.767

gtagaacggcgagaagagcggcgagaagaa	CRISPR spacer
ccagaacgccgagaagagtggcgagcaaag	Protospacer
 .****** *********.****** *.*.

16. spacer 5.2|1922813|30|NZ_CP041066|CRT matches to NZ_CP034839 (Rahnella aquatilis strain KM25 plasmid pKM12v2, complete sequence) position: , mismatch: 7, identity: 0.767

gtagaacggcgagaagagcggcgagaagaa	CRISPR spacer
ccagaacgccgagaagagtggcgagcaaag	Protospacer
 .****** *********.****** *.*.

17. spacer 5.2|1922813|30|NZ_CP041066|CRT matches to NZ_CP034837 (Rahnella aquatilis strain KM05 plasmid pKM05, complete sequence) position: , mismatch: 7, identity: 0.767

gtagaacggcgagaagagcggcgagaagaa	CRISPR spacer
ccagaacgccgagaagagtggcgagcaaag	Protospacer
 .****** *********.****** *.*.

18. spacer 5.2|1922813|30|NZ_CP041066|CRT matches to NZ_CP025188 (Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence) position: , mismatch: 7, identity: 0.767

gtagaacggcgagaagagcggcgagaagaa	CRISPR spacer
gatgggcggcgagacgagcggcgagacgag	Protospacer
*  *..******** *********** **.

19. spacer 5.5|1922957|30|NZ_CP041066|CRT matches to NZ_CP028521 (Lelliottia sp. WB101 plasmid unnamed1) position: , mismatch: 7, identity: 0.767

gtagaacggcgagaagaacggcgagaagaa	CRISPR spacer
agagaacgacgggaagaacggcgagagaca	Protospacer
. ******.**.**************.. *

20. spacer 5.5|1922957|30|NZ_CP041066|CRT matches to NZ_CP049247 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

gtagaacggcgagaagaacggcgagaagaa	CRISPR spacer
gtagaacggcgagaggaacggcttgccgtc	Protospacer
**************.*******  *  *

21. spacer 5.5|1922957|30|NZ_CP041066|CRT matches to CP052165 (Klebsiella pneumoniae strain F16KP0082 plasmid pF16KP0082-3, complete sequence) position: , mismatch: 7, identity: 0.767

gtagaacggcgagaagaacggcgagaagaa	CRISPR spacer
agaaaacggcgggaagaacggcgagcatca	Protospacer
. *.*******.************* *  *

22. spacer 5.5|1922957|30|NZ_CP041066|CRT matches to CP052145 (Klebsiella pneumoniae strain F17KP0012 plasmid pF17KP0012-2, complete sequence) position: , mismatch: 7, identity: 0.767

gtagaacggcgagaagaacggcgagaagaa	CRISPR spacer
agaaaacggcgggaagaacggcgagcatca	Protospacer
. *.*******.************* *  *

23. spacer 5.5|1922957|30|NZ_CP041066|CRT matches to NZ_LR134255 (Klebsiella aerogenes strain NCTC9644 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.767

gtagaacggcgagaagaacggcgagaagaa	CRISPR spacer
agaaaacggcgggaagaacggcgagcatca	Protospacer
. *.*******.************* *  *

24. spacer 5.5|1922957|30|NZ_CP041066|CRT matches to NZ_CP024977 (Escherichia coli strain CV839-15 plasmid pCV839-15-p3, complete sequence) position: , mismatch: 7, identity: 0.767

gtagaacggcgagaagaacggcgagaagaa	CRISPR spacer
agagaacgacgggaagaacggcgagcacca	Protospacer
. ******.**.************* *  *

25. spacer 5.5|1922957|30|NZ_CP041066|CRT matches to CP052205 (Klebsiella pneumoniae strain F16KP0002 plasmid pF16KP0002-2, complete sequence) position: , mismatch: 7, identity: 0.767

gtagaacggcgagaagaacggcgagaagaa	CRISPR spacer
agaaaacggcgggaagaacggcgagcatca	Protospacer
. *.*******.************* *  *

26. spacer 5.5|1922957|30|NZ_CP041066|CRT matches to CP052496 (Klebsiella pneumoniae strain B17KP0067 plasmid pB17KP0067-2, complete sequence) position: , mismatch: 7, identity: 0.767

gtagaacggcgagaagaacggcgagaagaa	CRISPR spacer
agaaaacggcgggaagaacggcgagcatca	Protospacer
. *.*******.************* *  *

27. spacer 5.5|1922957|30|NZ_CP041066|CRT matches to NZ_CP025885 (Escherichia coli strain 503440 plasmid p503440_68, complete sequence) position: , mismatch: 7, identity: 0.767

gtagaacggcgagaagaacggcgagaagaa	CRISPR spacer
agagaacgacgggaagaacggcgagcacca	Protospacer
. ******.**.************* *  *

28. spacer 5.5|1922957|30|NZ_CP041066|CRT matches to NC_020894 (Streptomyces hygroscopicus subsp. jinggangensis TL01 plasmid pSHJGH1, complete sequence) position: , mismatch: 7, identity: 0.767

gtagaacggcgagaagaacggcgagaagaa	CRISPR spacer
ggacgacggcaagaagagcggcgagaagcc	Protospacer
* * .*****.******.**********

29. spacer 5.5|1922957|30|NZ_CP041066|CRT matches to NC_017766 (Streptomyces hygroscopicus subsp. jinggangensis 5008 plasmid pSHJG1, complete sequence) position: , mismatch: 7, identity: 0.767

gtagaacggcgagaagaacggcgagaagaa	CRISPR spacer
ggacgacggcaagaagagcggcgagaagcc	Protospacer
* * .*****.******.**********

30. spacer 5.5|1922957|30|NZ_CP041066|CRT matches to NZ_AP019401 (Klebsiella pneumoniae strain E013 plasmid pE013, complete sequence) position: , mismatch: 7, identity: 0.767

gtagaacggcgagaagaacggcgagaagaa	CRISPR spacer
agaaaacggcgggaagaacggcgagcatca	Protospacer
. *.*******.************* *  *

31. spacer 5.5|1922957|30|NZ_CP041066|CRT matches to CP052316 (Klebsiella pneumoniae strain E16KP0093 plasmid pE16KP0093-1, complete sequence) position: , mismatch: 7, identity: 0.767

gtagaacggcgagaagaacggcgagaagaa	CRISPR spacer
agaaaacggcgggaagaacggcgagcatca	Protospacer
. *.*******.************* *  *

32. spacer 5.2|1922813|30|NZ_CP041066|CRT matches to NZ_CP016289 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

gtagaacggcgagaagagcggcgagaagaa	CRISPR spacer
aggtgcgggcgagaagagcggcgagaagag	Protospacer
. . .  **********************.

33. spacer 5.2|1922813|30|NZ_CP041066|CRT matches to NC_004689 (Mycobacterium phage Barnyard, complete genome) position: , mismatch: 8, identity: 0.733

gtagaacggcgagaagagcggcgagaagaa	CRISPR spacer
cgaggctggcgagaagatcggcgagaaggt	Protospacer
  **. .********** **********.

34. spacer 5.2|1922813|30|NZ_CP041066|CRT matches to NZ_CP013558 (Rhizobium phaseoli strain N841 plasmid pRphaN841a, complete sequence) position: , mismatch: 8, identity: 0.733

gtagaacggcgagaagagcggcgagaagaa	CRISPR spacer
cgagaacggcgagaagatcggcgggcgcac	Protospacer
  *************** *****.* . *

35. spacer 5.2|1922813|30|NZ_CP041066|CRT matches to NZ_CP033036 (Agrobacterium fabrum strain 12D13 plasmid pAt12D13a, complete sequence) position: , mismatch: 8, identity: 0.733

gtagaacggcgagaagagcggcgagaagaa	CRISPR spacer
gatcgacggcgagaagatcggccagaagcg	Protospacer
*   .************ **** ***** .

36. spacer 5.2|1922813|30|NZ_CP041066|CRT matches to NZ_CP013506 (Rhizobium sp. N1341 plasmid pRspN1341a, complete sequence) position: , mismatch: 8, identity: 0.733

gtagaacggcgagaagagcggcgagaagaa	CRISPR spacer
cgagaacggcgagaagatcggcgggcgcac	Protospacer
  *************** *****.* . *

37. spacer 5.2|1922813|30|NZ_CP041066|CRT matches to NZ_CP013569 (Rhizobium phaseoli strain N771 plasmid pRphaN771a, complete sequence) position: , mismatch: 8, identity: 0.733

gtagaacggcgagaagagcggcgagaagaa	CRISPR spacer
cgagaacggcgagaagatcggcgggcgcac	Protospacer
  *************** *****.* . *

38. spacer 5.5|1922957|30|NZ_CP041066|CRT matches to NZ_CP013558 (Rhizobium phaseoli strain N841 plasmid pRphaN841a, complete sequence) position: , mismatch: 8, identity: 0.733

gtagaacggcgagaagaacggcgagaagaa	CRISPR spacer
cgagaacggcgagaagatcggcgggcgcac	Protospacer
  *************** *****.* . *

39. spacer 5.5|1922957|30|NZ_CP041066|CRT matches to NZ_CP033036 (Agrobacterium fabrum strain 12D13 plasmid pAt12D13a, complete sequence) position: , mismatch: 8, identity: 0.733

gtagaacggcgagaagaacggcgagaagaa	CRISPR spacer
gatcgacggcgagaagatcggccagaagcg	Protospacer
*   .************ **** ***** .

40. spacer 5.5|1922957|30|NZ_CP041066|CRT matches to NZ_CP013506 (Rhizobium sp. N1341 plasmid pRspN1341a, complete sequence) position: , mismatch: 8, identity: 0.733

gtagaacggcgagaagaacggcgagaagaa	CRISPR spacer
cgagaacggcgagaagatcggcgggcgcac	Protospacer
  *************** *****.* . *

41. spacer 5.5|1922957|30|NZ_CP041066|CRT matches to NZ_CP013569 (Rhizobium phaseoli strain N771 plasmid pRphaN771a, complete sequence) position: , mismatch: 8, identity: 0.733

gtagaacggcgagaagaacggcgagaagaa	CRISPR spacer
cgagaacggcgagaagatcggcgggcgcac	Protospacer
  *************** *****.* . *

42. spacer 5.5|1922957|30|NZ_CP041066|CRT matches to NZ_CP033082 (Glutamicibacter nicotianae strain OTC-16 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

gtagaacggcgagaagaacggcgagaagaa	CRISPR spacer
agagaacggcgaggtgaacggcgagcgcac	Protospacer
. ***********. ********** . *

43. spacer 5.5|1922957|30|NZ_CP041066|CRT matches to NC_014258 (Pantoea vagans C9-1 plasmid pPag3, complete sequence) position: , mismatch: 8, identity: 0.733

gtagaacggcgagaagaacggcgagaagaa	CRISPR spacer
gtaaaacggccagaagaacggcggctccta	Protospacer
***.****** ************.     *

44. spacer 5.5|1922957|30|NZ_CP041066|CRT matches to NZ_CP030828 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence) position: , mismatch: 8, identity: 0.733

gtagaacggcgagaagaacggcgagaagaa	CRISPR spacer
tgagaatggcgagaagagcggcgagcactt	Protospacer
  ****.**********.******* *

45. spacer 5.5|1922957|30|NZ_CP041066|CRT matches to NZ_CP028350 (Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence) position: , mismatch: 8, identity: 0.733

gtagaacggcgagaagaacggcgagaagaa	CRISPR spacer
gtaaaacggccagaagaacggcggctccta	Protospacer
***.****** ************.     *

46. spacer 5.5|1922957|30|NZ_CP041066|CRT matches to NC_004689 (Mycobacterium phage Barnyard, complete genome) position: , mismatch: 8, identity: 0.733

gtagaacggcgagaagaacggcgagaagaa	CRISPR spacer
cgaggctggcgagaagatcggcgagaaggt	Protospacer
  **. .********** **********.

47. spacer 5.7|1923041|30|NZ_CP041066|CRT matches to KU064779 (Pseudomonas phage PPPL-1, complete genome) position: , mismatch: 8, identity: 0.733

gtagagcgatgagaagaatgacgagaagaa	CRISPR spacer
cctgagcgatgagaagaaggaccagatgcg	Protospacer
 . *************** *** *** * .

48. spacer 5.5|1922957|30|NZ_CP041066|CRT matches to NZ_CP016289 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.7

gtagaacggcgagaagaacggcgagaagaa	CRISPR spacer
aggtgcgggcgagaagagcggcgagaagag	Protospacer
. . .  **********.***********.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

467663 : 478129

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013059902.1\|467663_468896_-	PDZ domain-containing protein	A0A1B1IRD3	uncultured_Mediterranean_phage	8.1e-10	29.4
WP_029319484.1\|468953_469748_-	MBL fold metallo-hydrolase	A0A2H4J3R0	uncultured_Caudovirales_phage	7.0e-39	35.1
WP_029319486.1\|469766_470546_-	hypothetical protein	NA	NA	NA	NA
WP_140456575.1\|470532_471900_-	hypothetical protein	NA	NA	NA	NA
WP_013059906.1\|471890_473798_-	cell wall metabolism sensor histidine kinase WalK	W8CYF6	Bacillus_phage	7.6e-39	36.8
WP_013059907.1\|473804_474512_-	response regulator transcription factor	W8CYM9	Bacillus_phage	3.1e-46	42.0
WP_013085553.1\|475290_476577_-	adenylosuccinate synthase	A0A2P1EKE7	Megavirus	2.1e-69	35.9
WP_013059909.1\|476764_478129_-	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	1.5e-121	52.1

DBSCAN-SWA_2

748952 : 757214

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013055036.1\|748952_750245_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	5.9e-19	25.5
WP_013055037.1\|750319_751027_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3FGF0	Synechococcus_phage	1.2e-42	40.2
WP_013055038.1\|751034_751286_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_013055039.1\|751282_751969_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_064471263.1\|751952_754184_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	5.5e-158	41.3
WP_013055041.1\|754159_755575_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	4.3e-55	34.6
WP_029325686.1\|755601_756639_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3FZ01	Synechococcus_phage	8.5e-69	45.3
WP_013055043.1\|756635_757214_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.3e-29	39.2

DBSCAN-SWA_3

4759245 : 4768544

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_140457044.1\|4759245_4760763_-	RecQ family ATP-dependent DNA helicase	F2NZ48	Diadromus_pulchellus_ascovirus	2.5e-53	35.6
WP_013059045.1\|4760786_4761836_-	hypothetical protein	NA	NA	NA	NA
WP_013059046.1\|4762093_4762342_+	ferredoxin	A0A127AYY7	Bacillus_phage	3.6e-18	54.1
WP_013059047.1\|4762419_4762995_-	ECF transporter S component	NA	NA	NA	NA
WP_029320362.1\|4763590_4765165_+	phosphoglycerate dehydrogenase	A0A2H4PQU8	Staphylococcus_phage	1.3e-28	29.8
WP_013059049.1\|4765196_4765886_-	peptidoglycan DD-metalloendopeptidase family protein	Q8SBN9	Clostridium_phage	5.2e-14	42.1
WP_028410715.1\|4766055_4767828_-	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	7.5e-25	26.3
WP_013059051.1\|4767827_4768544_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.2e-47	42.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP041065

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

108351 : 115458

Staphylococcus_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029321003.1\|108351_109710_-	lanthionine synthetase C family protein	A0A2H4PQH9	Staphylococcus_phage	5.5e-52	33.2
WP_029321005.1\|109734_111618_-	ABC transporter ATP-binding protein	F2Y352	Organic_Lake_phycodnavirus	7.5e-15	30.6
WP_029321007.1\|111583_114802_-	lantibiotic dehydratase	A0A2H4PQG8	Staphylococcus_phage	4.9e-99	26.2
WP_013060079.1\|114887_115028_-	gallidermin/nisin family lantibiotic	A0A2H4PQH4	Staphylococcus_phage	1.5e-05	57.4
WP_013060079.1\|115102_115243_-	gallidermin/nisin family lantibiotic	A0A2H4PQH4	Staphylococcus_phage	1.5e-05	57.4
WP_013060079.1\|115317_115458_-	gallidermin/nisin family lantibiotic	A0A2H4PQH4	Staphylococcus_phage	1.5e-05	57.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041069

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP041066

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP041065

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection