CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041090	Bradyrhizobium symbiodeficiens strain 65S1MB chromosome, complete genome	1 crisprs	csa3,DEDDh,WYL	0	2	4	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041090_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041090_1

1491313-1492168

Orphan

Consensus_repeat	Method
TGATGGTGGCGCTGCCGGCCGTGCT	CRISPRCasFinder

14 spacers

The CRISPR arrays of NZ_CP041090_1

>merge|NZ_CP041090|1|1491313-1492168|CRISPRCasFinder
TGATGACGGCGTTGCCGGCCGTGCTGGTGCCGTTGAAGATTAGATTATAGGTGTTGGCGATGGTCGCGCTGCCAGCCGTGCTGGCGCCCGCGAACGACATCGCAAGGTTGTTGGTGATGGTTGCGCTTGCCGCTGTGCTCGAACCGCTGAAGCCCAAGACGCCGTTGTTGGTGATGTTGGCGCTTGCCGCCGAGCTGGTTTGGTTGAAATCGATTGAGCTGGTGTTGGTGATGACGGCATTGCCTGCCGTGCTCGAACCGTAGAAGTAGATCATTCCGCTGTTGTTGATCGTCGCGCTGCCGGCGGTGCTGGCGTCGTAAAATAACGTGGATCCGGCGTTGGTGATGGTGGCGCTGCCGGCCGTGCTGGTGCCGCGGAAATTCAGCGTGCCGGCACTGCTGTTGATGTTGATGGTGGCGCTGCCAGCCGTGCTCGAGTTGTAGAAGCCGACGAAGCCGTAGGACCCGCTAATGATGTTGGCGTTTGCGGCCGAACTCGAGTCGTTGAAGCTAAGCTGGCCGTAGGTGTTGTTGGTGATGTTGGCACTGCCGGCCGTGCTCGTGCCGTAGAAGTATGTCAAGCCGGCGTTGTTGGTGATGGTCGCGCTTCCGGCCGTGCTGGTGTTGTAGAAATTCAGGTGATAGTCATTGGTGACGCTGGTGCTGCCGGCACTGGTAGCGTTGCGGAAGTTTGTGGTCCCGCTGTTCGCGATGCTGGTGATGCCGCTCGTGTCGGCGTTGACGACGTCGAATGTGGCTCCACTGCCGACGGCGACTGTCCCCAGAATGGTGCCGATGCCGCCGGCACTGCCAAGCTGCAATGTGCCGCCGTTGATCGTGGTGCCGCCGGTATAGGT

>NZ_CP041090|1|1|1491313-1492168|CRISPRCasFinder
TGATGACGGCGTTGCCGGCCGTGCT	GGTGCCGTTGAAGATTAGATTATAGGTGTTGG
CGATGGTCGCGCTGCCAGCCGTGCT	GGCGCCCGCGAACGACATCGCAAGGTTGTTGG
TGATGGTTGCGCTTGCCGCTGTGCT	CGAACCGCTGAAGCCCAAGACGCCGTTGTTGG
TGATGTTGGCGCTTGCCGCCGAGCT	GGTTTGGTTGAAATCGATTGAGC
TGGTGTTGGTGATGACGGCATTGCC	TGCCGTGCTCGAACCGTAGAAGTAGATCATTCCGCTGTTGT
TGATCGTCGCGCTGCCGGCGGTGCT	GGCGTCGTAAAATAACGTGGATCCGGCGTTGG
TGATGGTGGCGCTGCCGGCCGTGCT	GGTGCCGCGGAAATTCAGCGTGCCGGCACTGCTGTTGATGT
TGATGGTGGCGCTGCCAGCCGTGCT	CGAGTTGTAGAAGCCGACGAAGCCGTAGGACCCGCTAA
TGATGTTGGCGTTTGCGGCCGAACT	CGAGTCGTTGAAGCTAAGCTGGCCGTAGGTGTTGTTGG
TGATGTTGGCACTGCCGGCCGTGCT	CGTGCCGTAGAAGTATGTCAAGCCGGCGTTGTTGG
TGATGGTCGCGCTTCCGGCCGTGCT	GGTGTTGTAGAAATTCAGGTGATAGTCATTGG
TGACGCTGGTGCTGCCGGCACTGGT	AGCGTTGCGGAAGTTTGTGGTCCCGCTGTTCG
CGATGCTGGTGATGCCGCTCGTGTC	GGCGTTGACGACGTCGAATGTGGCTCCACTGCCGACGGCGACTGTCCCCA
GAATGGTGCCGATGCCGCCGGCACT	GCCAAGCTGCAATGTGCCGCCGT
TGATCGTGGTGCCGCCGGTATAGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041090.1\|WP_094974771.1\|1486057_1487239_+\|aminotransferase	unknown	unknown	gnl\|CDD\|181580
NZ_CP041090.1\|WP_094974773.1\|1483637_1485566_+\|potassium-transporter-Kup	unknown	unknown	gnl\|CDD\|225700
NZ_CP041090.1\|WP_162308498.1\|1481598_1483497_+\|potassium-transporter-Kup	unknown	unknown	gnl\|CDD\|225700
NZ_CP041090.1\|WP_162848639.1\|1500725_1500881_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041090.1\|WP_094974763.1\|1498901_1499189_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|180597
NZ_CP041090.1\|WP_094974774.1\|1479801_1480575_+\|flagellar-motor-protein-PomA	unknown	unknown	gnl\|CDD\|181604
NZ_CP041090.1\|WP_094896445.1\|1480597_1481425_+\|flagellar-motor-protein-MotB	unknown	unknown	gnl\|CDD\|224279
NZ_CP041090.1\|WP_094974764.1\|1498420_1498891_-\|beta-hydroxyacyl-ACP-dehydratase	unknown	unknown	gnl\|CDD\|223835
NZ_CP041090.1\|WP_140478599.1\|1488531_1489149_-\|autotransporter-domain-containing-protein	unknown	unknown	gnl\|CDD\|214872
NZ_CP041090.1\|WP_140478603.1\|1493231_1494965_+\|transcriptional-regulator-CadC	unknown	unknown	gnl\|CDD\|226233
NZ_CP041090.1\|WP_140478605.1\|1494981_1495914_-\|lipid-A-biosynthesis-lauroyl-acyltransferase	unknown	unknown	gnl\|CDD\|235827
NZ_CP041090.1\|WP_162848640.1\|1501151_1501295_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041090.1\|WP_094975095.1\|1500066_1500696_+\|chromosome-partitioning-protein-ParB	unknown	unknown	gnl\|CDD\|226768
NZ_CP041090.1\|WP_026202463.1\|1485723_1486050_+\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP041090.1\|WP_140478597.1\|1487241_1488354_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP041090.1\|WP_140478607.1\|1497218_1498424_-\|beta-ketoacyl-ACP-synthase	unknown	unknown	gnl\|CDD\|235819
NZ_CP041090.1\|WP_094974766.1\|1495922_1497200_-\|beta-ketoacyl-ACP-synthase	unknown	unknown	gnl\|CDD\|235817
NZ_CP041090.1\|WP_094974762.1\|1499411_1499753_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041090.1\|WP_094975097.1\|1479209_1479503_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041090.1\|WP_162308497.1\|1478487_1479207_+\|RraA-family-protein	unknown	unknown	gnl\|CDD\|319245

Protein	Function_ID	Function_description	E-value
NZ_CP041090.1\|WP_094974771.1\|1486057_1487239_+\|aminotransferase	gnl\|CDD\|181580	PRK08912, PRK08912, aminotransferase.	0
NZ_CP041090.1\|WP_094974773.1\|1483637_1485566_+\|potassium-transporter-Kup	gnl\|CDD\|225700	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism].	0
NZ_CP041090.1\|WP_162308498.1\|1481598_1483497_+\|potassium-transporter-Kup	gnl\|CDD\|225700	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism].	0
NZ_CP041090.1\|WP_094974763.1\|1498901_1499189_-\|acyl-carrier-protein	gnl\|CDD\|180597	PRK06508, PRK06508, acyl carrier protein; Provisional.	1.07859e-57
NZ_CP041090.1\|WP_094974774.1\|1479801_1480575_+\|flagellar-motor-protein-PomA	gnl\|CDD\|181604	PRK08990, PRK08990, flagellar motor protein PomA; Reviewed.	6.90907e-72
NZ_CP041090.1\|WP_094896445.1\|1480597_1481425_+\|flagellar-motor-protein-MotB	gnl\|CDD\|224279	COG1360, MotB, Flagellar motor protein [Cell motility and secretion].	8.68165e-42
NZ_CP041090.1\|WP_094974764.1\|1498420_1498891_-\|beta-hydroxyacyl-ACP-dehydratase	gnl\|CDD\|223835	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism].	2.5276e-29
NZ_CP041090.1\|WP_140478599.1\|1488531_1489149_-\|autotransporter-domain-containing-protein	gnl\|CDD\|214872	smart00869, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type IV pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different peptidase is used and in some cases no cleavage occurs.	7.5205e-30
NZ_CP041090.1\|WP_140478603.1\|1493231_1494965_+\|transcriptional-regulator-CadC	gnl\|CDD\|226233	COG3710, CadC, DNA-binding winged-HTH domains [Transcription].	4.25606e-16
NZ_CP041090.1\|WP_094975095.1\|1500066_1500696_+\|chromosome-partitioning-protein-ParB	gnl\|CDD\|226768	COG4318, COG4318, Uncharacterized protein conserved in bacteria [Function unknown].	7.68644e-90
NZ_CP041090.1\|WP_026202463.1\|1485723_1486050_+\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	2.8884e-17
NZ_CP041090.1\|WP_140478597.1\|1487241_1488354_+\|extracellular-solute-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.05598e-167
NZ_CP041090.1\|WP_140478607.1\|1497218_1498424_-\|beta-ketoacyl-ACP-synthase	gnl\|CDD\|235819	PRK06519, PRK06519, beta-ketoacyl-ACP synthase.	0
NZ_CP041090.1\|WP_094974766.1\|1495922_1497200_-\|beta-ketoacyl-ACP-synthase	gnl\|CDD\|235817	PRK06501, PRK06501, beta-ketoacyl-ACP synthase.	0
NZ_CP041090.1\|WP_140478605.1\|1494981_1495914_-\|lipid-A-biosynthesis-lauroyl-acyltransferase	gnl\|CDD\|235827	PRK06553, PRK06553, lipid A biosynthesis lauroyl acyltransferase; Provisional.	0
NZ_CP041090.1\|WP_162308497.1\|1478487_1479207_+\|RraA-family-protein	gnl\|CDD\|319245	cd16841, RraA_family, ribonuclease activity regulator RraA family. RraA protein family is named after the regulator of ribonuclease activity A (RraA), a protein that binds to RNase E and inhibits RNase E endonucleolytic cleavages. Members also include proteins with other functions, like a 4-hydroxy-4-methyl-2-oxoglutarate/4-carboxy-4-hydroxy-2-oxoadipate (HMG/CHA) aldolase from Pseudomonas putida, which catalyzes the last step of the bacterial protocatechuate 4,5-cleavage pathway and the uncharacterized YER010Cp protein from yeast, an organism lacking RNAse E.	2.48162e-21

>NZ_CP041090.1|WP_140478599.1|1488531_1489149_-|autotransporter-domain-containing-protein
MPATRSDRRISRPPAYGWQDVTTDRTVTVSGTDKLTANFKASTFSGRLEAGWRFAPVPASSFGVTPYAAAQVTTFHLPGYGETAIVGSNQFALSYTSQDTTNVRTELGARTDQRFLVNDGALTLRGRLAWAHDTNTSRLVSAAFQTLPGAAFTVNGAQPAADSALVGGRAEMKWKNGLSLAGTIEGEFSQSTQTYTGKGTVRYEW
>NZ_CP041090.1|WP_140478597.1|1487241_1488354_+|extracellular-solute-binding-protein
MTNVGRFGLCLGFAIAAALNLPSAPVRAEERVVNFYNWSNYMAPDVLEAFTRETGIKVVYDTFDANETLETRLMAGKSGYDVVVPTAYFLQRQIKAKIFQKLDKSKLPNLTNAWPMVTKNLATYDPGNDYAANYMWGTTGIGYNVAKLKAILGPDARIDSWDIVFKPENLAKFRDCGVHMLDSADDIFPAALNYLGLDPNSTKQADLEKAADVVAKVRPSVRKFHSSEYLSALATGEICFVVGWSGDIMQARARAAESKNGVEIGYAIPKEGAQMFFDNLAIPADARNVREAYELINYLYRPDVAAKNSDFLSYANGNLASQKLVDPKILNDKNIYPDEPTLAKLFVITAREPATQRIINRLWTKVKTGR
>NZ_CP041090.1|WP_094974771.1|1486057_1487239_+|aminotransferase
MTTKSSSLNKVFADLPVTIFEAMSQAARDNAAINLGQGFPDDPGPEDIRRAAADASLNGYNQYPSMMGLPELRQAIATHYGHWHGLKLDPMSEVMVTSGGTEALTSAILAVVQPGDEVVCFQPVYDSYLPIIRQAGGIPRLVRLEPPHWRLNEDMLKSVFNSKTKAVLFNNPLNPSAVVYPREDLELLARYCQEFDVIAITDEVWEHVTFDEHKHIPLITIPGMRERTIKVGSAGKIFSLTGWKIGFVCAAPPLLRVAAKVHQFLTFTTAPNLQAAVAYGLGKPDEYFLSMRKDLTRSRDRLTKGLESLGFPVLKSQGTYFLTVDLSPLGLNESDTEFCWRIVKDYKVAAIPVSAFYEQDPVTSVVRFCFAKKDATLDTALERLSDAVRGRKR
>NZ_CP041090.1|WP_026202463.1|1485723_1486050_+|rhodanese-like-domain-containing-protein
MANQVQDLTPDEVSKGVAEGRYLLVDVREPNEVEAEAYPYGVVVPLSTFDPKAIPDPQGKDVVFACRSGKRSVTASLAAQAAGLPYDKHLAGGMLGWKAAGLPSKVGG
>NZ_CP041090.1|WP_094974773.1|1483637_1485566_+|potassium-transporter-Kup
MTNDIAISAPETAAANGHGDAHTTAGFGALTLGSIGVVYGDIGTSPLYAFREAVMAASGAEGVPTPAAVLGVLSLILWALIVVVTLKYVVILLRADNNGEGGTLALMALAQRAVGTRGATIVLLGIISGALFYGDAVITPALSVLSAIEGMKDITLHFEPYVVPLTVIILVGLFAVQSRGTARVAAFFGPIMCVWFAVLAVAAIHPIIQQPQVLYALNPLYAVSFMLHHGIIGFVTLGAVFLAVTGAEALYADLGHFGKRPIQTAWLFIVLPSLALNYLGQGALVLGDPGAIVSPFFQLFPQGFFRGCMVVLATAATVIASQAVITGAYSLTRQAIQLGLLPRFEIRHTSEAHSGQIFIPRINQLLLVAVVLLVLLFRSSSALASAYGISVTGTMVVTAMMGFVVIWKVWRWSPLAAGALIAPFLFLDLTFLAANLLKVFEGGWVPLALGALMIILMYTWRRGSRLLFEKSRKLEFPLADLVAMLEKRPPQRVPGTAVFLTSDPLSAPTALMHSLKHYKVLHEKNVILTIETAQTPRIDPAERVKLEQISPTFSKVTLKFGFMESPNVPKALAIARKLGWQFDIMSTSFFLSRRTLKPAAHSGMPRWQDRLFISLSRSANDATDYFQIPSGRVVEVGTQVTI
>NZ_CP041090.1|WP_162308498.1|1481598_1483497_+|potassium-transporter-Kup
MTASITQAETQDGPVTSGFWSLTLGSIGVVFGDIGTSPLYAFHEAVRGAAHGAPVSRVMVLGVLSLILWALLIVVTAKYVLLLLRADNNGEGGTLSLMALGQRALGRRSWFLLALGVVGASMFIGDSMITPAISVLSAVEGLKLAAPALEHYVVPLTVFILVLLFAVQSKGTALVASAFGPVMVVWFTVIAVMGAVHIADDPSVLAAINPYYAVQFVLSHGTIGLVTLGAVFLAVTGGEALYADLGHFGRKPIQSAWMFFVLPALLINYFGQGALVLSDPSAIEHSFYRMVPESLVLPLVGLATAATVIASQAVITGAYSLVYQAVQLGLLPRFEVRYTSETHAGQIYLPRVNRLLLIGVMLLVLLFHTPSNLASAYGIAVSTTMVADGIMGFVVIWKLWNWRAATAAAVIVPFVIVDLSFFSANLLKLLEGAWVPLLFGVAMAGTIWTWRKGSGILIQKTRRIEVPLDDLIRSLEKRPPHVVKGTAVFLTSDPAFVPTALLHNLKHNKVLHEHNVVLTIETAHTPRVDLAERFRMEKISDKFSKVRLRFGYMEQPNVPKALAIARKQGWQFDIMSTSFFVSRRSLKASAQSGMPLWQDHLFIALSRSANDATDYFQIPTGRVVEVGTQVTI
>NZ_CP041090.1|WP_094896445.1|1480597_1481425_+|flagellar-motor-protein-MotB
MAKKKREEAHGGHGWFVTFADLMALLLAFFVMLVAFSTQDANKLKIVAGSMREAFGVQSEARYAGIIESDGLPTRARLKNVDHIQPEESSNTPTPDQEDHDKTSGARMKVDRNFALAAASLRQALQDMPELTEISKHIMFEETKQGLNLEIVDQDGRSMFADGSKVPYDRTRRLVEKLAIPLKATPLRVSIAGHTAAGFVPNRSDYGAFDLSADRANAVRQILEREGLPPSHIFAVSGKADTQPLFPDDPSLAANRRVTITLMREDPPLPPNLKP
>NZ_CP041090.1|WP_094974774.1|1479801_1480575_+|flagellar-motor-protein-PomA
MDIMTGAGLAGGLAVIVAMVLMGGDLHMFISEHAMIIIFGGSAAATMIRFPLSVLMHGLPLGMKFAFTMSRLSAHDLVDELARIAEIARKQGPVGLEKVETDEPFLAKGIRYVADGYDLDFIRDNLERDRDNFLLHLNEGSKIYRAVGDCAPAFGMIGTLIGMVQMFSNMSDPSKLGPFMATALLATLYGALVANLICLPIADKLHTKLIDEETNRTLIIDGILMIRDSKSPTLVREMLLAYLPEKHRHAEGEPVPA
>NZ_CP041090.1|WP_094975097.1|1479209_1479503_-|hypothetical-protein
MLTLFSLLTAVPAVLALHLLEPELVLPAFSALLFVEAAFAVIAARLIHSTHSADDITLWDLAGGFTLIGCAAAVLGEPDQAALFLTEQGGPRQASSP
>NZ_CP041090.1|WP_162308497.1|1478487_1479207_+|RraA-family-protein
MTEKATGPLPASVLEALGRYDTPTICNAMEIVAPERRLIGYTTKQLVCPFPDLPPIVGYARTVAIRSVLKSSLPAEEQSKRRIEYYEYVGTGHGPRISVIQDIDGPDVGYGAFWGEVQSNVHKALGCLGVITDGSIRDIPQWAPGFQALAGSIGPSHAWVHAESFGGEVRVAGMTVKSDDLIHADQHGAIVIPLDIAAKLPEAAELCGRRETPILEIARSPDFSLEKLKAALKRSAEIH
>NZ_CP041090.1|WP_140478603.1|1493231_1494965_+|transcriptional-regulator-CadC
MLRFAGFELDLQRAELRGADGMPIKLRPKTFEMLRLFAASGGRVLSKQELMEAVWPNVHVGEDSLFQCIRELRTALGDERRQLIKLASGGGYLLATEVVAAPDVTAQAEGLRSDPTGEVERRPPAEVVAAPVRPQRAVFGLSRQAMVAAVAALCVIVVGLAVAAPVLKPDLLFKRTPPRLVVMPIVDDSNDPRGAVMAAEVTARLTDGFAKIQNISVVAPRLAATGGDSTAASVASSDYELRGELQHSDQSWTLRARVIKAGTGEVQSVVAASVSADEADAQLAQSRLVAGAGHVLARRLNEILEPSAAPSRARKSSAGGDKVAVEQALASINQTTRERFGAAQTMLQKALADDPDNRDIAVALASLQMRGIQMRWFSSDEAFAVEAKASATLEQALRSKPNSIPVLEAYCRFQSATNHFVESLVTCAKVLSFDPWDGSALYLVGLGQIFLGRFDDALATFRQADRYDTPPTSRWTWLLGAGWATLLKGQGEEAVPWLQRSIAITAATGRSHMLLAVAYQRSRRFDEARAAIREGLKLQPGTTRFNVAPPTKNASPLYLAAADRVVQGMVDAGLPER
>NZ_CP041090.1|WP_140478605.1|1494981_1495914_-|lipid-A-biosynthesis-lauroyl-acyltransferase
MALIPVSTKIRARNAAKSIGGSLIGAATVGMLRTTRYFDPAKTSDFFARAVKLIGPRLREHRIGRANLTAAFPEKSAEEIEQILMGVWDNLGRVGAEFAHMDHVWDYDRDHPENSRIELPARSIELFDRIRDDGKPALIFAAHLANWELPALAAVAHGLETAILYRRPNIASADRIIQEMRQVNMGTLIPAGRDAPLRLAQALKDGKHVAMLIDQYLTGGVEVTFFGRKTRANPMLARLLRQVECPIHGVRIIRLPGGRFRGELTEEVQPVRDAEGRIDIQGTTQAITSVVEGWVREHPEQWLWLHRRWR
>NZ_CP041090.1|WP_094974766.1|1495922_1497200_-|beta-ketoacyl-ACP-synthase
MTAPRDKLGRPVVVVTGMGIMTSLGAGKADNWAKLVAGESGIRTITRFPVDGLKTTMAGTVDFVSVDPFSSTGLSERMAEIVTEEALEQAGIGAKADFPGPLFLAVAPVEVEWPQRRELGRAVGAPDFTYDDLLRISGGGKYSAYHHRFMFGSVAAYLAETFGTKGSPISLSTACASGATSIQLGVEAIRRGETDAALCVATDGTVNPEALVRFSLLSALSTQNDPPQAASRPFSKNRDGFVMAEGAGALVLESYEAATARGAKILGVIAGCGELTDSFHRTRSSPDGKPIIGCMNKTLADAGMTPDQIDHINAHGTATPENDKMEFNTTSAVFGELAQKIPVTSNKSMVGHTISAAGAVEAIFSLLTLEHQRIPPTINYETPDPTILFNVVGNKARDARVTAVMSNSFGFGGQNASLILTREPA
>NZ_CP041090.1|WP_140478607.1|1497218_1498424_-|beta-ketoacyl-ACP-synthase
MTDTASKPGQTEVWITGIGLATSLGEGLDANWAALSEKRINVDEKRFAPYIVHPLMPVSFDSQIPKKGDQRQMEAWQRIGTYAAGLALDSAGIKGNKDILSKIDMVVAAGGGERDLNVDTGVLTAEAKGANAPGSLNERLMSDLRPTLFLAQLSNLLAGNIAIVHGLGGTSRTFMGEEVAGADAARIALARIASGESDIALVGGSHNGERKDLLVLYEFGDFNLKDKFAPVWARKDHAGFALGSAGAFLVLESKAHAQARGAKPFARLTSVVADLARRKQPGDMAATLEQLWAKLPRREGKGAIISGATGAEPATSEEHGFLKGHADFPVRSTGTMFGHTMETQFPLGIALAALSISRGALFPPNDSTGTEIEMQGAPTQIVVVGAGHWRGEGMALVEAVG
>NZ_CP041090.1|WP_094974764.1|1498420_1498891_-|beta-hydroxyacyl-ACP-dehydratase
MQLEYFHMIDRIVDLKVDEKTIVVEAQVPKESTVFEGHFPGYPLMPGVLLIESMAQASGWLQLGVLKFERMPILAAVKEAKVRGSVFPGDLMSIEASLVHEGSGYAMTEAKIRVGGKLRANSALTFTLIPFPNADIRGYMAKVAERVGFPQQAVSP
>NZ_CP041090.1|WP_094974763.1|1498901_1499189_-|acyl-carrier-protein
MSSTFDQVATIIAETCDIPRDTITPDSHAIDDLGIDSLDFLDIAFAIDKQFGIKLPLEKWTQEVNDGKATTEQYFVLKNLCARIDELVAAKGAGA
>NZ_CP041090.1|WP_094974762.1|1499411_1499753_-|hypothetical-protein
MTTQRPISSDDEHRVLQFRPRTSPSPAAHRGSGTVQPLRVAPEPLDLSRYEQPRAEPDDFRHRMLANIAALAFTIALTAIGIWLAVSIADLRRTQDCVLMGRRDCAKITTPHI
>NZ_CP041090.1|WP_094975095.1|1500066_1500696_+|chromosome-partitioning-protein-ParB
MTTTNAREPRVHPVPILSLRPTQMTVGMREVKEKRKRWREHDRKKQADLLGKHMIPVVYGPDARYYVIDHHHLGRALHDEGVKEVLVTVVGDLRMVEREAFWGVMDNKRWVYPYDAKGERRQFRDLPKSVADLKDDPFRSLAGELRRLGGFAKDTTPFSEFLWADFLRRKVSRKVVEADFDKALEKAISAAKSKDAIYLPGWCGPEDDD
>NZ_CP041090.1|WP_162848639.1|1500725_1500881_-|hypothetical-protein
MKIVIQKLNGLWHLIVGSHRIRTPFLDTQDRALVVTYARRAYPGARIFQPD
>NZ_CP041090.1|WP_162848640.1|1501151_1501295_+|hypothetical-protein
MRRLVFVIFLLAIASAGISASFAAVHHAKSLTFAERFAPALELMAKR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NZ_CP022209	Burkholderia gladioli pv. gladioli strain FDAARGOS_188 plasmid unnamed1, complete sequence	156135-156166	6	0.812
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NZ_CP009321	Burkholderia gladioli strain ATCC 10248 plasmid 1, complete sequence	180841-180872	6	0.812
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NZ_CP022007	Burkholderia gladioli pv. gladioli strain KACC 11889 plasmid pls1, complete sequence	108207-108238	6	0.812
NZ_CP041090_1	1.2\|1491395\|32\|NZ_CP041090\|CRISPRCasFinder	1491395-1491426	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1781241-1781272	8	0.75
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NZ_CP013528	Rhizobium phaseoli strain R723 plasmid pRphaR723a, complete sequence	255164-255195	8	0.75
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NZ_CP013581	Rhizobium phaseoli strain N261 plasmid pRphaN261a, complete sequence	255167-255198	8	0.75
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NZ_CP050095	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b1, complete sequence	199074-199105	9	0.719
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	535439-535470	9	0.719
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NZ_CP050106	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence	259232-259263	9	0.719
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NC_008381	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL10, complete sequence	409618-409649	9	0.719
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NZ_CP049733	Rhizobium leguminosarum strain A1 plasmid pRL10, complete sequence	523117-523148	9	0.719
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NZ_CP006991	Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence	639932-639963	9	0.719
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NZ_CP021026	Rhizobium sp. TAL182 plasmid pRetTAL182b, complete sequence	178880-178911	9	0.719
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NZ_CP013524	Rhizobium phaseoli strain R744 plasmid pRphaR744b, complete sequence	245660-245691	9	0.719
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NZ_CP013553	Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence	255610-255641	9	0.719
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NZ_CP025506	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence	251597-251628	9	0.719
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NZ_CP013586	Rhizobium phaseoli strain N161 plasmid pRphaN161a, complete sequence	260433-260464	9	0.719
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NZ_CP013559	Rhizobium phaseoli strain N841 plasmid pRphaN841b, complete sequence	257119-257150	9	0.719
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NZ_CP013576	Rhizobium phaseoli strain N671 plasmid pRphaN671b, complete sequence	256890-256921	9	0.719
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NZ_CP013548	Rhizobium phaseoli strain R611 plasmid pRetR611a, complete sequence	256888-256919	9	0.719
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NZ_CP013533	Rhizobium phaseoli strain R650 plasmid pRphaR650a, complete sequence	256888-256919	9	0.719
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NZ_CP013543	Rhizobium phaseoli strain R620 plasmid pRphaR620a, complete sequence	260300-260331	9	0.719
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NZ_CP013564	Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence	255610-255641	9	0.719
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	259416-259447	9	0.719
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NZ_CP013570	Rhizobium phaseoli strain N771 plasmid pRphaN771b, complete sequence	256890-256921	9	0.719
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NZ_CP021128	Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence	589962-589993	9	0.719
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NZ_CP022668	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence	139704-139735	9	0.719
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	CP007645	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence	648376-648407	9	0.719
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NZ_CP053207	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1C, complete sequence	552161-552192	9	0.719
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NZ_CP035002	Rhizobium acidisoli strain FH23 plasmid pRapFH23d, complete sequence	410722-410753	9	0.719
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NZ_CP050088	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence	397291-397322	9	0.719
NZ_CP041090_1	1.2\|1491395\|32\|NZ_CP041090\|CRISPRCasFinder	1491395-1491426	32	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	1117380-1117411	10	0.688
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NZ_CP013631	Rhizobium sp. N324 plasmid pRspN324a, complete sequence	212946-212977	10	0.688
NZ_CP041090_1	1.3\|1491452\|32\|NZ_CP041090\|CRISPRCasFinder	1491452-1491483	32	NC_011368	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence	151996-152027	10	0.688

1. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP022209 (Burkholderia gladioli pv. gladioli strain FDAARGOS_188 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

cgaaccgctgaagcccaagacgccg--ttgttgg	CRISPR spacer
cgaatcgctgaagcccaagactccgtatcgtc--	Protospacer
****.**************** ***  *.**.

2. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP009321 (Burkholderia gladioli strain ATCC 10248 plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.812

cgaaccgctgaagcccaagacgccg--ttgttgg	CRISPR spacer
cgaatcgctgaagcccaagactccgtatcgtc--	Protospacer
****.**************** ***  *.**.

3. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP022007 (Burkholderia gladioli pv. gladioli strain KACC 11889 plasmid pls1, complete sequence) position: , mismatch: 6, identity: 0.812

cgaaccgctgaagcccaagacgccg--ttgttgg	CRISPR spacer
cgaatcgctgaagcccaagactccgtatcgtc--	Protospacer
****.**************** ***  *.**.

4. spacer 1.2|1491395|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgcccgcgaacgacatcgcaaggttgttgg	CRISPR spacer
gatggccgcgaagggcatcgcaaggttggcga	Protospacer
*..* ******* *.************* .*.

5. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP013528 (Rhizobium phaseoli strain R723 plasmid pRphaR723a, complete sequence) position: , mismatch: 8, identity: 0.75

cgaaccgctgaagcccaagacgccgttgttgg	CRISPR spacer
ctttgcgctgaagaccaagacgccgttgccga	Protospacer
*    ******** **************..*.

6. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP013581 (Rhizobium phaseoli strain N261 plasmid pRphaN261a, complete sequence) position: , mismatch: 8, identity: 0.75

cgaaccgctgaagcccaagacgccgttgttgg	CRISPR spacer
ctttgcgctgaagaccaagacgccgttgccga	Protospacer
*    ******** **************..*.

7. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP050095 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b1, complete sequence) position: , mismatch: 9, identity: 0.719

cgaaccgctgaagcccaagacgccgttgttgg	CRISPR spacer
ctttgcgctgaagaccaagacgccattgccga	Protospacer
*    ******** **********.***..*.

8. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP050083 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence) position: , mismatch: 9, identity: 0.719

cgaaccgctgaagcccaagacgccgttgttgg	CRISPR spacer
cttcgcgctgaagaccaagacgccattgccga	Protospacer
*    ******** **********.***..*.

9. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP050106 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence) position: , mismatch: 9, identity: 0.719

cgaaccgctgaagcccaagacgccgttgttgg	CRISPR spacer
cttcgcgctgaagaccaagacgccattgccga	Protospacer
*    ******** **********.***..*.

10. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NC_008381 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL10, complete sequence) position: , mismatch: 9, identity: 0.719

cgaaccgctgaagcccaagacgccgttgttgg	CRISPR spacer
ctttgcgctgaagaccaagacgccattgccga	Protospacer
*    ******** **********.***..*.

11. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP049733 (Rhizobium leguminosarum strain A1 plasmid pRL10, complete sequence) position: , mismatch: 9, identity: 0.719

cgaaccgctgaagcccaagacgccgttgttgg	CRISPR spacer
cttcgcgctgaagaccaagacgccattgccga	Protospacer
*    ******** **********.***..*.

12. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 9, identity: 0.719

cgaaccgctgaagcccaagacgccgttgttgg	CRISPR spacer
ctttgcgctgaagaccaagacgccgctgccga	Protospacer
*    ******** ***********.**..*.

13. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP021026 (Rhizobium sp. TAL182 plasmid pRetTAL182b, complete sequence) position: , mismatch: 9, identity: 0.719

cgaaccgctgaagcccaagacgccgttgttgg	CRISPR spacer
ctttgcgctgaagaccaagacgccgctgccga	Protospacer
*    ******** ***********.**..*.

14. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP013524 (Rhizobium phaseoli strain R744 plasmid pRphaR744b, complete sequence) position: , mismatch: 9, identity: 0.719

cgaaccgctgaagcccaagacgccgttgttgg	CRISPR spacer
ctttgcgctgaagaccaagacgccgctgccga	Protospacer
*    ******** ***********.**..*.

15. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP013553 (Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence) position: , mismatch: 9, identity: 0.719

cgaaccgctgaagcccaagacgccgttgttgg	CRISPR spacer
ctttgcgctgaagaccaagacgccgctgccga	Protospacer
*    ******** ***********.**..*.

16. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP025506 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence) position: , mismatch: 9, identity: 0.719

cgaaccgctgaagcccaagacgccgttgttgg	CRISPR spacer
cttcgcgctgaagaccaagacgccattgccga	Protospacer
*    ******** **********.***..*.

17. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP013586 (Rhizobium phaseoli strain N161 plasmid pRphaN161a, complete sequence) position: , mismatch: 9, identity: 0.719

cgaaccgctgaagcccaagacgccgttgttgg	CRISPR spacer
ctttgcgctgaagaccaagacgccgctgccga	Protospacer
*    ******** ***********.**..*.

18. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP013559 (Rhizobium phaseoli strain N841 plasmid pRphaN841b, complete sequence) position: , mismatch: 9, identity: 0.719

cgaaccgctgaagcccaagacgccgttgttgg	CRISPR spacer
ctttgcgctgaagaccaagacgccgctgccga	Protospacer
*    ******** ***********.**..*.

19. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP013576 (Rhizobium phaseoli strain N671 plasmid pRphaN671b, complete sequence) position: , mismatch: 9, identity: 0.719

cgaaccgctgaagcccaagacgccgttgttgg	CRISPR spacer
ctttgcgctgaagtccaagacgccgctgccga	Protospacer
*    ********.***********.**..*.

20. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP013548 (Rhizobium phaseoli strain R611 plasmid pRetR611a, complete sequence) position: , mismatch: 9, identity: 0.719

cgaaccgctgaagcccaagacgccgttgttgg	CRISPR spacer
ctttgcgctgaagtccaagacgccgctgccga	Protospacer
*    ********.***********.**..*.

21. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP013533 (Rhizobium phaseoli strain R650 plasmid pRphaR650a, complete sequence) position: , mismatch: 9, identity: 0.719

cgaaccgctgaagcccaagacgccgttgttgg	CRISPR spacer
ctttgcgctgaagtccaagacgccgctgccga	Protospacer
*    ********.***********.**..*.

22. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP013543 (Rhizobium phaseoli strain R620 plasmid pRphaR620a, complete sequence) position: , mismatch: 9, identity: 0.719

cgaaccgctgaagcccaagacgccgttgttgg	CRISPR spacer
ctttgcgctgaagtccaagacgccgctgccga	Protospacer
*    ********.***********.**..*.

23. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP013564 (Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence) position: , mismatch: 9, identity: 0.719

cgaaccgctgaagcccaagacgccgttgttgg	CRISPR spacer
ctttgcgctgaagaccaagacgccgctgccga	Protospacer
*    ******** ***********.**..*.

24. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP050111 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence) position: , mismatch: 9, identity: 0.719

cgaaccgctgaagcccaagacgccgttgttgg	CRISPR spacer
cttcgcgctgaagaccaagacgccattgccga	Protospacer
*    ******** **********.***..*.

25. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP013570 (Rhizobium phaseoli strain N771 plasmid pRphaN771b, complete sequence) position: , mismatch: 9, identity: 0.719

cgaaccgctgaagcccaagacgccgttgttgg	CRISPR spacer
ctttgcgctgaagtccaagacgccgctgccga	Protospacer
*    ********.***********.**..*.

26. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP021128 (Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence) position: , mismatch: 9, identity: 0.719

cgaaccgctgaagcccaagacgccgttgttgg	CRISPR spacer
ctttgcgctgaagaccaagacgccgctgccga	Protospacer
*    ******** ***********.**..*.

27. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP022668 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence) position: , mismatch: 9, identity: 0.719

cgaaccgctgaagcccaagacgccgttgttgg	CRISPR spacer
cttcgcgctgaagaccaagacgccattgccga	Protospacer
*    ******** **********.***..*.

28. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to CP007645 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence) position: , mismatch: 9, identity: 0.719

cgaaccgctgaagcccaagacgccgttgttgg	CRISPR spacer
ctttgcgctgaagaccaagacgccgctgccga	Protospacer
*    ******** ***********.**..*.

29. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP053207 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1C, complete sequence) position: , mismatch: 9, identity: 0.719

cgaaccgctgaagcccaagacgccgttgttgg	CRISPR spacer
cttcgcgctgaagaccaagacgccattgccga	Protospacer
*    ******** **********.***..*.

30. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP035002 (Rhizobium acidisoli strain FH23 plasmid pRapFH23d, complete sequence) position: , mismatch: 9, identity: 0.719

cgaaccgctgaagcccaagacgccgttgttgg	CRISPR spacer
ctttgcgctgaagaccaagacgccgctgccga	Protospacer
*    ******** ***********.**..*.

31. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP050088 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence) position: , mismatch: 9, identity: 0.719

cgaaccgctgaagcccaagacgccgttgttgg	CRISPR spacer
cttcgcgctgaagaccaagacgccattgccga	Protospacer
*    ******** **********.***..*.

32. spacer 1.2|1491395|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.688

ggcgcccgcgaacgacatcgcaaggttgttgg	CRISPR spacer
tgcgcccgcgaacggcttcgcaagacgcagag	Protospacer
 *************.* *******..    .*

33. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NZ_CP013631 (Rhizobium sp. N324 plasmid pRspN324a, complete sequence) position: , mismatch: 10, identity: 0.688

cgaaccgctgaagcccaagacgccgttgttgg	CRISPR spacer
ttttgcgctgaagaccaagacgccgctgccga	Protospacer
.    ******** ***********.**..*.

34. spacer 1.3|1491452|32|NZ_CP041090|CRISPRCasFinder matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 10, identity: 0.688

cgaaccgctgaagcccaagacgccgttgttgg	CRISPR spacer
ttttgcgctgaagtccaagacgccattgccga	Protospacer
.    ********.**********.***..*.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

852760 : 862149

Escherichia_phage(42.86%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_140477869.1\|852760_853492_+	ATP-binding cassette domain-containing protein	W5SAS9	Pithovirus	3.0e-12	28.6
WP_140477871.1\|853475_854180_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	4.9e-12	24.9
WP_140477873.1\|854286_854475_-	hypothetical protein	NA	NA	NA	NA
WP_162406332.1\|854467_855157_-	aldolase	A0A077SK32	Escherichia_phage	9.7e-45	47.8
WP_140477877.1\|855261_856179_+	NAD-binding protein	A0A077SLF7	Escherichia_phage	7.8e-66	47.4
WP_140477879.1\|856193_856976_+	TIM barrel protein	NA	NA	NA	NA
WP_140477881.1\|856972_858259_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	2.2e-74	42.5
WP_140477883.1\|858428_860120_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.0e-15	53.1
WP_094975294.1\|860460_862149_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	3.9e-15	53.1

DBSCAN-SWA_2

1760132 : 1829404

Aeromonas_phage(10.0%)

tail,plate,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162406425.1\|1760132_1762022_-\|plate	putative baseplate assembly protein	NA	NA	NA	NA
WP_140478955.1\|1762021_1767157_-	hypothetical protein	NA	NA	NA	NA
WP_140483351.1\|1767153_1767582_-	GPW/gp25 family protein	E5DQC6	Aeromonas_phage	3.4e-08	35.4
WP_140478957.1\|1767587_1767878_-	hypothetical protein	NA	NA	NA	NA
WP_140478959.1\|1767885_1768527_-\|tail	phage tail protein	NA	NA	NA	NA
WP_140478961.1\|1768523_1769627_-	phage late control D family protein	NA	NA	NA	NA
WP_140478963.1\|1769604_1770273_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_140478965.1\|1770280_1771318_-	hypothetical protein	NA	NA	NA	NA
WP_140478967.1\|1771320_1771746_-\|tail	phage tail protein	A0A059XP77	uncultured_phage	2.9e-07	30.0
WP_140478969.1\|1771751_1771934_-	hypothetical protein	NA	NA	NA	NA
WP_038967634.1\|1772341_1772776_-\|tail	phage tail protein	NA	NA	NA	NA
WP_140478971.1\|1772789_1774364_-\|tail	phage tail sheath family protein	J9PVC2	Bacillus_phage	8.9e-62	33.7
WP_140478973.1\|1774436_1775444_-	hypothetical protein	NA	NA	NA	NA
WP_140478975.1\|1775457_1776246_-	hypothetical protein	NA	NA	NA	NA
WP_051000385.1\|1776235_1776811_-	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_162406427.1\|1776818_1779335_-	AAA family ATPase	A0A2D2W2A9	Stenotrophomonas_phage	1.4e-08	34.6
WP_140478980.1\|1780111_1782268_-	exonuclease	A0A0A7RWA3	Clostridium_phage	2.9e-18	30.9
WP_140478982.1\|1782519_1783896_-	hypothetical protein	NA	NA	NA	NA
WP_140478984.1\|1784579_1786187_+	amidohydrolase family protein	NA	NA	NA	NA
WP_140478985.1\|1787152_1787950_-	hypothetical protein	NA	NA	NA	NA
WP_162406429.1\|1788316_1792543_+	hypothetical protein	NA	NA	NA	NA
WP_140478989.1\|1792751_1793030_-	hypothetical protein	NA	NA	NA	NA
WP_140478991.1\|1793624_1795076_+	hypothetical protein	NA	NA	NA	NA
WP_140478993.1\|1795072_1796455_+	hypothetical protein	NA	NA	NA	NA
WP_140478995.1\|1796451_1797327_+	hypothetical protein	NA	NA	NA	NA
WP_140478997.1\|1797330_1798677_+	SPASM domain-containing protein	NA	NA	NA	NA
WP_162406431.1\|1798673_1800062_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_140479001.1\|1800077_1800632_-	hypothetical protein	NA	NA	NA	NA
WP_140479002.1\|1800822_1803801_+	AAA family ATPase	NA	NA	NA	NA
WP_140479004.1\|1803916_1804375_-	hypothetical protein	NA	NA	NA	NA
WP_140479006.1\|1805443_1806433_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_140479008.1\|1806752_1808189_-	hypothetical protein	NA	NA	NA	NA
WP_140479010.1\|1808392_1813924_-	AAA family ATPase	A0A2H4N7Z5	Lake_Baikal_phage	5.2e-32	38.0
WP_140479012.1\|1813935_1815240_-	tryptophan 7-halogenase	M4T1E3	Cyanophage	8.9e-07	37.8
WP_162406433.1\|1815236_1816490_-	hypothetical protein	NA	NA	NA	NA
WP_140479016.1\|1816536_1817139_-	hypothetical protein	NA	NA	NA	NA
WP_140479018.1\|1817164_1819435_-	TOMM precursor leader peptide-binding protein	NA	NA	NA	NA
WP_162406435.1\|1819882_1821130_-	cytochrome P450	I6WI04	Cotesia_sesamiae_Mombasa_bracovirus	5.7e-11	30.5
WP_162406437.1\|1821129_1821792_-	hypothetical protein	NA	NA	NA	NA
WP_162406439.1\|1822014_1822521_+	SagB/ThcOx family dehydrogenase	NA	NA	NA	NA
WP_140479024.1\|1823980_1824976_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_140479026.1\|1824998_1825808_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	1.4e-31	39.5
WP_140479028.1\|1825804_1826575_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_140479030.1\|1826681_1827809_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA
WP_140479032.1\|1827808_1829404_+\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	2.5e-51	29.8

DBSCAN-SWA_3

2572074 : 2582104

uncultured_Mediterranean_phage(88.89%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_140479871.1\|2572074_2573475_-	peptidoglycan DD-metalloendopeptidase family protein	Q8SBN9	Clostridium_phage	4.9e-19	41.8
WP_162308903.1\|2573584_2574202_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.3e-29	51.2
WP_094977798.1\|2574463_2574835_+	response regulator	NA	NA	NA	NA
WP_162308566.1\|2574838_2575606_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	4.8e-37	38.0
WP_094977796.1\|2575701_2576064_-	hypothetical protein	NA	NA	NA	NA
WP_094977795.1\|2576140_2577472_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	5.2e-95	48.8
WP_094977794.1\|2577608_2578421_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.2e-54	48.0
WP_140479872.1\|2578417_2578963_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_028145381.1\|2579051_2579285_-	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	5.4e-08	63.6
WP_162406531.1\|2579453_2580218_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	9.1e-44	49.7
WP_140479874.1\|2580239_2581079_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	2.0e-31	36.7
WP_140479875.1\|2581075_2582104_-	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	1.3e-21	41.2

DBSCAN-SWA_4

5762186 : 5771045

Mycobacterium_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_140481719.1\|5762186_5762930_+	AAA family ATPase	W8ECJ6	Mycobacterium_phage	1.9e-09	28.8
WP_140481720.1\|5763065_5763965_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	G3MA33	Bacillus_virus	1.7e-20	29.1
WP_094976086.1\|5764046_5764808_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA
WP_140481721.1\|5764804_5766379_+	2-polyprenylphenol 6-hydroxylase	A0A0P0CRP3	Ostreococcus_lucimarinus_virus	9.3e-27	24.1
WP_140481722.1\|5766445_5767894_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	2.9e-35	31.0
WP_140481723.1\|5767890_5768349_+	dUTP diphosphatase	K4JSC8	Caulobacter_phage	5.4e-36	58.6
WP_094976082.1\|5768540_5771045_+	PAS domain-containing protein	W8CYF6	Bacillus_phage	6.5e-22	28.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage