Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP041091 Nocardioides sp. KUDC 5002 chromosome, complete genome 6 crisprs cas4,WYL,DEDDh,csa3,DinG,RT 2 4 1 0

Results visualization

1. NZ_CP041091
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041091_1 233717-233812 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041091_2 908132-908216 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041091_3 961116-961282 Orphan NA
2 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041091_4 3949813-3949920 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041091_5 4030851-4030959 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041091_6 4264240-4264316 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP041091_4 4.1|3949837|60|NZ_CP041091|CRISPRCasFinder 3949837-3949896 60 NZ_CP041091.1 3374401-3374460 0 1.0
NZ_CP041091_1 1.1|233748|34|NZ_CP041091|CRISPRCasFinder 233748-233781 34 NZ_CP041091.1 1759826-1759859 2 0.941

1. spacer 4.1|3949837|60|NZ_CP041091|CRISPRCasFinder matches to position: 3374401-3374460, mismatch: 0, identity: 1.0

ggaaacccgcggacctgtcggccgaaacccgcacgacacgccgatggcgcacggcgtgtc	CRISPR spacer
ggaaacccgcggacctgtcggccgaaacccgcacgacacgccgatggcgcacggcgtgtc	Protospacer
************************************************************

2. spacer 1.1|233748|34|NZ_CP041091|CRISPRCasFinder matches to position: 1759826-1759859, mismatch: 2, identity: 0.941

gggtcacccggggcccgccgaggggtcacccggg	CRISPR spacer
gggtcacccggggccccgcgaggggtcacccggg	Protospacer
****************  ****************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP041091_3 3.1|961158|27|NZ_CP041091|PILER-CR 961158-961184 27 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 5516111-5516137 4 0.852
NZ_CP041091_3 3.1|961158|27|NZ_CP041091|PILER-CR 961158-961184 27 CP047390 Agrobacterium sp. CGMCC 11546 plasmid pB 54326-54352 4 0.852
NZ_CP041091_3 3.2|961227|26|NZ_CP041091|PILER-CR 961227-961252 26 NZ_CP016082 Streptomyces sp. SAT1 plasmid unnamed2, complete sequence 291327-291352 4 0.846
NZ_CP041091_3 3.2|961227|26|NZ_CP041091|PILER-CR 961227-961252 26 NC_012811 Methylorubrum extorquens AM1 megaplasmid, complete sequence 82264-82289 4 0.846
NZ_CP041091_3 3.2|961227|26|NZ_CP041091|PILER-CR 961227-961252 26 NZ_CP042262 Litoreibacter sp. LN3S51 plasmid unnamed1, complete sequence 382366-382391 4 0.846
NZ_CP041091_3 3.2|961227|26|NZ_CP041091|PILER-CR 961227-961252 26 NZ_CP016463 Bosea sp. RAC05 plasmid pBSY19_1, complete sequence 631777-631802 4 0.846
NZ_CP041091_3 3.1|961158|27|NZ_CP041091|PILER-CR 961158-961184 27 NZ_CP012915 Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence 623458-623484 5 0.815
NZ_CP041091_3 3.1|961158|27|NZ_CP041091|PILER-CR 961158-961184 27 NC_015383 Burkholderia gladioli BSR3 plasmid bgla_4p, complete sequence 187811-187837 5 0.815
NZ_CP041091_3 3.1|961158|27|NZ_CP041091|PILER-CR 961158-961184 27 NZ_CP032340 Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence 1508915-1508941 5 0.815
NZ_CP041091_3 3.2|961227|26|NZ_CP041091|PILER-CR 961227-961252 26 NC_012529 Deinococcus deserti VCD115 plasmid 2, complete sequence 184682-184707 5 0.808
NZ_CP041091_3 3.2|961227|26|NZ_CP041091|PILER-CR 961227-961252 26 NZ_CP010860 Marinovum algicola DG 898 plasmid pMaD5, complete sequence 62663-62688 5 0.808
NZ_CP041091_3 3.2|961227|26|NZ_CP041091|PILER-CR 961227-961252 26 NZ_CP016083 Streptomyces sp. SAT1 plasmid unnamed3, complete sequence 340124-340149 5 0.808
NZ_CP041091_3 3.2|961227|26|NZ_CP041091|PILER-CR 961227-961252 26 NC_009806 Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence 44358-44383 5 0.808
NZ_CP041091_3 3.1|961158|27|NZ_CP041091|PILER-CR 961158-961184 27 NZ_CP029776 Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed2, complete sequence 87521-87547 6 0.778
NZ_CP041091_3 3.1|961158|27|NZ_CP041091|PILER-CR 961158-961184 27 NZ_CP022191 Yangia pacifica strain YSBP01 plasmid unnamed1, complete sequence 319550-319576 6 0.778
NZ_CP041091_3 3.1|961158|27|NZ_CP041091|PILER-CR 961158-961184 27 NZ_CP021355 Rhodococcus sp. S2-17 plasmid pRB98, complete sequence 204804-204830 6 0.778
NZ_CP041091_3 3.1|961158|27|NZ_CP041091|PILER-CR 961158-961184 27 NZ_CP021355 Rhodococcus sp. S2-17 plasmid pRB98, complete sequence 247341-247367 6 0.778
NZ_CP041091_3 3.1|961158|27|NZ_CP041091|PILER-CR 961158-961184 27 MH779501 Gordonia phage Emianna, complete genome 8272-8298 6 0.778
NZ_CP041091_3 3.1|961158|27|NZ_CP041091|PILER-CR 961158-961184 27 MH727547 Gordonia phage Foxboro, complete genome 8632-8658 6 0.778
NZ_CP041091_3 3.1|961158|27|NZ_CP041091|PILER-CR 961158-961184 27 MH779510 Gordonia phage Kurt, complete genome 8272-8298 6 0.778
NZ_CP041091_3 3.1|961158|27|NZ_CP041091|PILER-CR 961158-961184 27 NC_008270 Rhodococcus jostii RHA1 plasmid pRHL2, complete sequence 166810-166836 6 0.778
NZ_CP041091_3 3.1|961158|27|NZ_CP041091|PILER-CR 961158-961184 27 NZ_CP016354 Prauserella marina strain DSM 45268 plasmid pPmarDSM45268, complete sequence 21041-21067 6 0.778
NZ_CP041091_3 3.1|961158|27|NZ_CP041091|PILER-CR 961158-961184 27 NZ_CP022567 Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK03, complete sequence 37403-37429 6 0.778
NZ_CP041091_3 3.2|961227|26|NZ_CP041091|PILER-CR 961227-961252 26 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 5192382-5192407 6 0.769
NZ_CP041091_6 6.1|4264263|31|NZ_CP041091|CRISPRCasFinder 4264263-4264293 31 CP054927 Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence 346755-346785 6 0.806
NZ_CP041091_1 1.1|233748|34|NZ_CP041091|CRISPRCasFinder 233748-233781 34 NZ_CP020811 Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed2, complete sequence 60510-60543 10 0.706

1. spacer 3.1|961158|27|NZ_CP041091|PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 4, identity: 0.852

acatcgccgcgcagcgcagcgctgact	CRISPR spacer
acatcgccgcgcagcgcggcgcaggcg	Protospacer
*****************.**** *.* 

2. spacer 3.1|961158|27|NZ_CP041091|PILER-CR matches to CP047390 (Agrobacterium sp. CGMCC 11546 plasmid pB) position: , mismatch: 4, identity: 0.852

-acatcgccgcgcagcgcagcgctgact	CRISPR spacer
tgcat-gccgcgcagcgcagcgctgccg	Protospacer
 .*** ******************* * 

3. spacer 3.2|961227|26|NZ_CP041091|PILER-CR matches to NZ_CP016082 (Streptomyces sp. SAT1 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.846

tcgccgcggagcgcggtgccgtgatg	CRISPR spacer
ccgccgcggtgcgcggcgccgtgagg	Protospacer
.******** ******.******* *

4. spacer 3.2|961227|26|NZ_CP041091|PILER-CR matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 4, identity: 0.846

tcgccgcggagcgcggtgccgtgatg	CRISPR spacer
tcgcggcggagcgcgctgccgtgttc	Protospacer
**** ********** ******* * 

5. spacer 3.2|961227|26|NZ_CP041091|PILER-CR matches to NZ_CP042262 (Litoreibacter sp. LN3S51 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.846

tcgccgcggagcgcggtgccgtgatg	CRISPR spacer
tgaccgcggcgcgcggtgtcgtgatg	Protospacer
* .****** ********.*******

6. spacer 3.2|961227|26|NZ_CP041091|PILER-CR matches to NZ_CP016463 (Bosea sp. RAC05 plasmid pBSY19_1, complete sequence) position: , mismatch: 4, identity: 0.846

tcgccgcggagcgcggtgccgtgatg	CRISPR spacer
ttgccgcggagcgcgctgcagtgatc	Protospacer
*.************* *** ***** 

7. spacer 3.1|961158|27|NZ_CP041091|PILER-CR matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 5, identity: 0.815

acatcgccgcgcagcgcagcgctgact	CRISPR spacer
gcatcgccgcgcagcgctccgctgccg	Protospacer
.****************  ***** * 

8. spacer 3.1|961158|27|NZ_CP041091|PILER-CR matches to NC_015383 (Burkholderia gladioli BSR3 plasmid bgla_4p, complete sequence) position: , mismatch: 5, identity: 0.815

acatcgccgcgcagcgcagcgctgact	CRISPR spacer
tcatcgacgcgcagcgcaacgctgcca	Protospacer
 ***** ***********.***** * 

9. spacer 3.1|961158|27|NZ_CP041091|PILER-CR matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.815

acatcgccgcgcagcgcagcgctgact	CRISPR spacer
gcatcgccgcgcagcgctccgctgccg	Protospacer
.****************  ***** * 

10. spacer 3.2|961227|26|NZ_CP041091|PILER-CR matches to NC_012529 (Deinococcus deserti VCD115 plasmid 2, complete sequence) position: , mismatch: 5, identity: 0.808

tcgccgcggagcgcggtgccgtgatg	CRISPR spacer
acgctgcggagcgcggtgccgtgccc	Protospacer
 ***.****************** . 

11. spacer 3.2|961227|26|NZ_CP041091|PILER-CR matches to NZ_CP010860 (Marinovum algicola DG 898 plasmid pMaD5, complete sequence) position: , mismatch: 5, identity: 0.808

tcgccgcggagcgcggtgccgtgatg	CRISPR spacer
gtgccgcgcagcgcggtgccgagatt	Protospacer
 .****** ************ *** 

12. spacer 3.2|961227|26|NZ_CP041091|PILER-CR matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.808

tcgccgcggagcgcggtgccgtgatg	CRISPR spacer
acgccgaggagcgcggtgccgtcggg	Protospacer
 ***** *************** . *

13. spacer 3.2|961227|26|NZ_CP041091|PILER-CR matches to NC_009806 (Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01, complete sequence) position: , mismatch: 5, identity: 0.808

tcgccgcggagcgcggtgccgtgatg	CRISPR spacer
ggtccggggagggcggtgccgtgatg	Protospacer
   *** **** **************

14. spacer 3.1|961158|27|NZ_CP041091|PILER-CR matches to NZ_CP029776 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.778

acatcgccgcgcagcgcagcgctgact	CRISPR spacer
gggacgccgcgcagcgcagcgccgacc	Protospacer
. . ******************.***.

15. spacer 3.1|961158|27|NZ_CP041091|PILER-CR matches to NZ_CP022191 (Yangia pacifica strain YSBP01 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.778

acatcgccgcgcagcgcagcgctgact	CRISPR spacer
tcggggccgcgcagcgccgcgctgacc	Protospacer
 *.  ************ ********.

16. spacer 3.1|961158|27|NZ_CP041091|PILER-CR matches to NZ_CP021355 (Rhodococcus sp. S2-17 plasmid pRB98, complete sequence) position: , mismatch: 6, identity: 0.778

acatcgccgcgcagcgcagcgctgact	CRISPR spacer
acatcgccgcgcagcgcggcgtaggga	Protospacer
*****************.***. *.  

17. spacer 3.1|961158|27|NZ_CP041091|PILER-CR matches to NZ_CP021355 (Rhodococcus sp. S2-17 plasmid pRB98, complete sequence) position: , mismatch: 6, identity: 0.778

acatcgccgcgcagcgcagcgctgact	CRISPR spacer
acatcgccgcgcagcgcggcgtaggga	Protospacer
*****************.***. *.  

18. spacer 3.1|961158|27|NZ_CP041091|PILER-CR matches to MH779501 (Gordonia phage Emianna, complete genome) position: , mismatch: 6, identity: 0.778

acatcgccgcgcagcgcagcgctgact	CRISPR spacer
cggtcgccgcgcatcgcagcgcggacc	Protospacer
  .********** ******** ***.

19. spacer 3.1|961158|27|NZ_CP041091|PILER-CR matches to MH727547 (Gordonia phage Foxboro, complete genome) position: , mismatch: 6, identity: 0.778

acatcgccgcgcagcgcagcgctgact	CRISPR spacer
cggtcgccgcgcatcgcagcgcggacc	Protospacer
  .********** ******** ***.

20. spacer 3.1|961158|27|NZ_CP041091|PILER-CR matches to MH779510 (Gordonia phage Kurt, complete genome) position: , mismatch: 6, identity: 0.778

acatcgccgcgcagcgcagcgctgact	CRISPR spacer
cggtcgccgcgcatcgcagcgcggacc	Protospacer
  .********** ******** ***.

21. spacer 3.1|961158|27|NZ_CP041091|PILER-CR matches to NC_008270 (Rhodococcus jostii RHA1 plasmid pRHL2, complete sequence) position: , mismatch: 6, identity: 0.778

acatcgccgcgcagcgcagcgctgact	CRISPR spacer
acatcgccgcgcagcgcggcgtaggag	Protospacer
*****************.***. *.  

22. spacer 3.1|961158|27|NZ_CP041091|PILER-CR matches to NZ_CP016354 (Prauserella marina strain DSM 45268 plasmid pPmarDSM45268, complete sequence) position: , mismatch: 6, identity: 0.778

acatcgccgcgcagcgcagcgctgact	CRISPR spacer
gcatcggggcgcagcgcagcgctgcgg	Protospacer
.*****  ****************   

23. spacer 3.1|961158|27|NZ_CP041091|PILER-CR matches to NZ_CP022567 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK03, complete sequence) position: , mismatch: 6, identity: 0.778

acatcgccgcgcagcgcagcgctgact	CRISPR spacer
cagtcgccgcgcatcgcagtgctgacc	Protospacer
  .********** *****.******.

24. spacer 3.2|961227|26|NZ_CP041091|PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 6, identity: 0.769

tcgccgcggagcgcggtgccgtgatg	CRISPR spacer
ccgccgccgagcgcggtgccgttgac	Protospacer
.****** ************** .  

25. spacer 6.1|4264263|31|NZ_CP041091|CRISPRCasFinder matches to CP054927 (Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.806

--catccgacgccccggcacccggcgcatccgg	CRISPR spacer
cccgcccg--gcccccgcgcccggcgcatccgg	Protospacer
  *..***  ***** **.**************

26. spacer 1.1|233748|34|NZ_CP041091|CRISPRCasFinder matches to NZ_CP020811 (Mycobacterium dioxanotrophicus strain PH-06 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.706

gggtcacccggggcccgccgaggggtcacccggg	CRISPR spacer
gcggggccctggccccgccgaggggtcaccgatt	Protospacer
* *  .*** ** ***************** .  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1241083 : 1251172 7 uncultured_Mediterranean_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage