CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP033959	Klebsiella pneumoniae strain L39_2 plasmid p6_L39, complete sequence	0 crisprs	NA	0
NZ_CP033957	Klebsiella pneumoniae strain L39_2 plasmid p4_L39, complete sequence	0 crisprs	RT	2
NZ_CP033958	Klebsiella pneumoniae strain L39_2 plasmid p5_L39, complete sequence	0 crisprs	RT	0
NZ_CP033956	Klebsiella pneumoniae strain L39_2 plasmid p3_L39, complete sequence	0 crisprs	RT	2
NZ_CP033954	Klebsiella pneumoniae strain L39_2 chromosome, complete genome	1 crisprs	csa3,RT,cas3,DEDDh,DinG,WYL	12
NZ_CP033955	Klebsiella pneumoniae strain L39_2 plasmid p2_L39, complete sequence	0 crisprs	NA	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

288 : 29111

Escherichia_phage(33.33%)

transposase,integrase

attL 23565:23580|attR 31106:31121

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000427619.1\|288_1293_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_000954592.1\|1474_1651_-	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
WP_001043260.1\|1980_2796_+	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_000251875.1\|2882_3185_+	phosphoglucosamine mutase	NA	NA	NA	NA
WP_071881958.1\|3078_3330_-	hypothetical protein	NA	NA	NA	NA
WP_001120888.1\|3360_4854_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000743213.1\|5064_5289_-	hypothetical protein	NA	NA	NA	NA
WP_001446887.1\|5285_6023_-	recombinase family protein	NA	NA	NA	NA
WP_001550559.1\|6129_6621_+	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|6654_7359_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001239317.1\|7438_7939_+	hypothetical protein	NA	NA	NA	NA
WP_001011939.1\|8088_8730_+	type A-2 chloramphenicol O-acetyltransferase CatII	G3CFL0	Escherichia_phage	7.3e-55	45.9
WP_001067855.1\|8873_9578_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_087758686.1\|9568_9724_+	replication initiator protein	NA	NA	NA	NA
WP_000470728.1\|9755_10433_-	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA
WP_000804064.1\|10511_11711_+	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
WP_000058717.1\|11742_12627_-	EamA family transporter	NA	NA	NA	NA
WP_001351729.1\|12764_13157_-	cysteine hydrolase	NA	NA	NA	NA
WP_040212993.1\|14918_16022_+	peptidoglycan synthetase FtsI	NA	NA	NA	NA
WP_012477595.1\|16086_16944_+	class A beta-lactamase LAP-2	Q1MVP3	Enterobacteria_phage	2.0e-92	61.1
WP_001516695.1\|18540_19197_+	quinolone resistance pentapeptide repeat protein QnrS1	NA	NA	NA	NA
WP_001493761.1\|19976_21368_-\|transposase	ISKra4-like element ISKpn19 family transposase	NA	NA	NA	NA
WP_001493762.1\|21404_21977_-	recombinase family protein	M9Q1K0	Clostridium_phage	3.4e-19	39.4
WP_012477564.1\|22113_22704_-	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_077256884.1\|22754_23330_+	DUF4113 domain-containing protein	F1C5A5	Cronobacter_phage	1.6e-45	59.3
WP_000780222.1\|23476_23758_-	helix-turn-helix transcriptional regulator	A0A2I6TC97	Escherichia_phage	1.3e-08	38.0
23565:23580	attL	NA	NA	NA	NA
WP_000493286.1\|23738_24068_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	2.4e-09	44.2
WP_032440552.1\|24303_24945_+	hypothetical protein	NA	NA	NA	NA
WP_015344981.1\|25084_25369_-	hypothetical protein	NA	NA	NA	NA
WP_032440553.1\|25440_25650_-	hypothetical protein	NA	NA	NA	NA
WP_032440554.1\|25642_26701_-	hypothetical protein	NA	NA	NA	NA
WP_032440555.1\|27485_27734_+	helix-turn-helix transcriptional regulator	A0A248SLB9	Klebsiella_phage	1.6e-10	51.5
WP_032440556.1\|27818_28304_+	hypothetical protein	NA	NA	NA	NA
WP_086556681.1\|28433_29111_+\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	8.7e-22	51.6
31106:31121	attR	NA	NA	NA	NA

DBSCAN-SWA_2

76743 : 85487

Escherichia_phage(22.22%)

transposase,integrase

attL 81176:81235|attR 84720:85539

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152765.1\|76743_78228_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_045325066.1\|78305_78731_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.7e-31	49.3
WP_108970993.1\|78730_79510_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	3.7e-69	51.0
WP_053897648.1\|79657_81214_-	PAS domain-containing protein	A0A1B0V854	Salmonella_phage	1.1e-83	99.4
81176:81235	attL	NA	NA	NA	NA
WP_001067855.1\|81238_81943_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_094818827.1\|81976_82501_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.2e-31	48.4
WP_015344971.1\|82640_82925_-	hypothetical protein	NA	NA	NA	NA
WP_000845048.1\|82893_83907_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_004201280.1\|84062_84536_+	trimethoprim-resistant dihydrofolate reductase DfrA14	G3MBI7	Bacillus_virus	8.4e-16	28.9
WP_001067855.1\|84782_85487_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
84720:85539	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP033954

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP033954_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP033954_1

4625939-4626033

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP033954_1

>merge|NZ_CP033954|1|4625939-4626033|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP033954|1|1|4625939-4626033|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP033954.1\|WP_004151368.1\|4620113_4623020_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP033954.1\|WP_002888353.1\|4616697_4617393_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP033954.1\|WP_002888340.1\|4626174_4627800_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP033954.1\|WP_002888357.1\|4615057_4616560_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP033954.1\|WP_002888347.1\|4623766_4624306_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP033954.1\|WP_002888373.1\|4611258_4612026_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP033954.1\|WP_002888323.1\|4635096_4635474_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP033954.1\|WP_004147026.1\|4629591_4631940_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP033954.1\|WP_002888320.1\|4636582_4637062_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP033954.1\|WP_002888345.1\|4624485_4625850_-\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP033954.1\|WP_002888348.1\|4623032_4623692_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP033954.1\|WP_002888337.1\|4627789_4628488_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP033954.1\|WP_002888368.1\|4613337_4615047_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP033954.1\|WP_002888332.1\|4628520_4629348_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP033954.1\|WP_002888329.1\|4631994_4633281_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP033954.1\|WP_002888370.1\|4612154_4613000_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP033954.1\|WP_002888321.1\|4635478_4636327_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP033954.1\|WP_002888349.1\|4617568_4619926_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP033954.1\|WP_002888324.1\|4634272_4635094_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP033954.1\|WP_002888327.1\|4633286_4634276_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696

Protein	Function_ID	Function_description	E-value
NZ_CP033954.1\|WP_004151368.1\|4620113_4623020_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP033954.1\|WP_002888353.1\|4616697_4617393_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP033954.1\|WP_002888340.1\|4626174_4627800_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
NZ_CP033954.1\|WP_002888357.1\|4615057_4616560_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP033954.1\|WP_002888347.1\|4623766_4624306_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_CP033954.1\|WP_002888373.1\|4611258_4612026_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.35562e-48
NZ_CP033954.1\|WP_002888323.1\|4635096_4635474_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP033954.1\|WP_004147026.1\|4629591_4631940_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP033954.1\|WP_002888320.1\|4636582_4637062_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP033954.1\|WP_002888345.1\|4624485_4625850_-\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP033954.1\|WP_002888348.1\|4623032_4623692_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
NZ_CP033954.1\|WP_002888337.1\|4627789_4628488_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NZ_CP033954.1\|WP_002888368.1\|4613337_4615047_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP033954.1\|WP_002888332.1\|4628520_4629348_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP033954.1\|WP_002888329.1\|4631994_4633281_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP033954.1\|WP_002888370.1\|4612154_4613000_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP033954.1\|WP_002888321.1\|4635478_4636327_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP033954.1\|WP_002888349.1\|4617568_4619926_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP033954.1\|WP_002888324.1\|4634272_4635094_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP033954.1\|WP_002888327.1\|4633286_4634276_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0

>NZ_CP033954.1|WP_002888345.1|4624485_4625850_-|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP033954.1|WP_002888347.1|4623766_4624306_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP033954.1|WP_002888348.1|4623032_4623692_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP033954.1|WP_004151368.1|4620113_4623020_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESIDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAGIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP033954.1|WP_002888349.1|4617568_4619926_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSHVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP033954.1|WP_002888353.1|4616697_4617393_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP033954.1|WP_002888357.1|4615057_4616560_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATVEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP033954.1|WP_002888368.1|4613337_4615047_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYDDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSKAALTH
>NZ_CP033954.1|WP_002888370.1|4612154_4613000_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVREACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP033954.1|WP_002888373.1|4611258_4612026_-|DedA-family-protein
MQALLEHFITQSTVYSLLAVMLVAFLESLALVGLILPGTVMMAGLGALIGGGEVNFWQAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFMKKNRALLEKTEHALHQHSMITILIGRFVGPTRPLVPMVAGMLDLPVAKFVLPNIIGCLLWPPLYFLPGILAGAAIDIPADENSASFKWLLLGAALLAWLAGWLCWRLWRSAKTSGDRLTRWLPRGRLLWLSPLMVALAATALTFVFRHPLMPVYLAILHKVIAR
>NZ_CP033954.1|WP_002888340.1|4626174_4627800_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>NZ_CP033954.1|WP_002888337.1|4627789_4628488_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP033954.1|WP_002888332.1|4628520_4629348_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP033954.1|WP_004147026.1|4629591_4631940_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP033954.1|WP_002888329.1|4631994_4633281_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP033954.1|WP_002888327.1|4633286_4634276_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP033954.1|WP_002888324.1|4634272_4635094_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP033954.1|WP_002888323.1|4635096_4635474_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP033954.1|WP_002888321.1|4635478_4636327_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP033954.1|WP_002888320.1|4636582_4637062_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

448676 : 481934

uncultured_Caudovirales_phage(73.33%)

portal,capsid,tRNA,tail,head,protease,integrase,terminase

attL 466284:466301|attR 482279:482296

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002919147.1\|448676_449624_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	2.2e-07	37.2
WP_002919144.1\|449638_450148_-	peptide deformylase	E3SLL2	Synechococcus_phage	2.6e-18	40.3
WP_002919139.1\|450276_451401_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_002919137.1\|451372_451846_+	DUF494 domain-containing protein	NA	NA	NA	NA
WP_004145330.1\|451871_452414_+	hypothetical protein	NA	NA	NA	NA
WP_002919132.1\|452418_452991_+	L-threonylcarbamoyladenylate synthase type 1 TsaC	NA	NA	NA	NA
WP_002919126.1\|452994_453813_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_002919125.1\|453809_454067_+	DUF1488 domain-containing protein	NA	NA	NA	NA
WP_002919123.1\|454042_454597_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_002919103.1\|460392_460614_-	membrane protein	NA	NA	NA	NA
WP_002919102.1\|460907_464018_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_002919101.1\|464030_465170_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004150972.1\|465548_466199_+	acrEF/envCD operon transcriptional regulator	NA	NA	NA	NA
466284:466301	attL	NA	NA	NA	NA
WP_004150971.1\|466474_467701_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.8e-150	62.2
WP_004150970.1\|467793_468735_+	hypothetical protein	NA	NA	NA	NA
WP_001547839.1\|468916_469201_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_004150969.1\|469211_469991_+	hypothetical protein	Q8HA02	Enterobacteria_phage	6.2e-40	51.5
WP_024194847.1\|470114_470309_-	hypothetical protein	NA	NA	NA	NA
WP_106918304.1\|470442_470712_+	host cell division inhibitor Icd-like protein	A0A2H4JGW3	uncultured_Caudovirales_phage	2.4e-44	94.4
WP_001549752.1\|470704_470893_+	hypothetical protein	NA	NA	NA	NA
WP_004150967.1\|470885_471200_+	hypothetical protein	NA	NA	NA	NA
WP_004150966.1\|471196_471565_+	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	3.7e-51	81.1
WP_001549749.1\|471561_471927_+	hypothetical protein	NA	NA	NA	NA
WP_004150965.1\|471926_474062_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	3.4e-205	62.4
WP_004150964.1\|474404_474740_+	hypothetical protein	NA	NA	NA	NA
WP_004150963.1\|474788_475301_-	hypothetical protein	NA	NA	NA	NA
WP_001549743.1\|475564_476731_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	9.8e-207	95.9
WP_001547826.1\|476782_477343_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.2e-98	95.7
WP_004150962.1\|477344_478586_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.0e-230	96.5
WP_004150961.1\|478582_478918_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	3.7e-26	57.8
WP_001547824.1\|478914_479214_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	3.4e-39	80.8
WP_004150959.1\|479213_479657_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.8e-77	91.8
WP_004198610.1\|479783_479975_+	hypothetical protein	NA	NA	NA	NA
WP_000113647.1\|479932_480289_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	5.5e-60	99.2
WP_004150955.1\|480272_481934_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	98.0
482279:482296	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1174678 : 1260011

100

Salmonella_phage(69.23%)

portal,capsid,tRNA,coat,tail,transposase,integrase,head,plate,terminase,lysis

attL 1188432:1188451|attR 1237112:1237131

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002914765.1\|1174678_1177306_+\|tRNA	alanine--tRNA ligase	A0A2K9L1X7	Tupanvirus	4.9e-81	38.6
WP_099119228.1\|1177377_1177560_-	hypothetical protein	NA	NA	NA	NA
WP_000906486.1\|1177669_1177855_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	4.9e-12	66.7
WP_002914359.1\|1179376_1179691_+	BON domain-containing protein	NA	NA	NA	NA
WP_002914357.1\|1179816_1180383_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	NA	NA	NA
WP_002914355.1\|1180379_1180808_+	DedA family protein	NA	NA	NA	NA
WP_002914353.1\|1180874_1182431_+	glutamate--cysteine ligase	NA	NA	NA	NA
WP_002914351.1\|1182587_1183103_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_002914345.1\|1183155_1183923_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002914344.1\|1183901_1185578_-	2-isopropylmalate synthase	NA	NA	NA	NA
WP_002914342.1\|1185714_1187253_-	multidrug efflux MFS transporter permease subunit EmrB	NA	NA	NA	NA
WP_002914339.1\|1187268_1188441_-	multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA	NA	NA	NA
1188432:1188451	attL	NA	NA	NA	NA
WP_002914337.1\|1188566_1189097_-	transcriptional repressor MprA	NA	NA	NA	NA
WP_002914335.1\|1189187_1189523_-	L-valine transporter subunit YgaH	NA	NA	NA	NA
WP_002914333.1\|1189512_1190259_-	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_002914330.1\|1190436_1191435_-	glycine betaine/L-proline ABC transporter substrate-binding protein ProX	NA	NA	NA	NA
WP_004151038.1\|1191513_1192581_-	glycine betaine/L-proline ABC transporter permease ProW	NA	NA	NA	NA
WP_002914328.1\|1192573_1193776_-	glycine betaine/L-proline ABC transporter ATP-binding protein ProV	G3M9Y6	Bacillus_virus	1.2e-26	37.8
WP_002914327.1\|1194132_1195095_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A0M4S3B4	Mycobacterium_phage	1.5e-131	72.2
WP_002914325.1\|1195105_1197247_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	2.5e-184	46.4
WP_002914321.1\|1197219_1197630_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA
WP_002914320.1\|1197626_1197872_-	glutaredoxin-like protein NrdH	A0A0M7REK7	Lactobacillus_phage	5.5e-11	41.1
WP_004151037.1\|1198055_1198487_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_004149442.1\|1198575_1199928_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_002914293.1\|1200071_1200419_-	DUF883 domain-containing protein	NA	NA	NA	NA
WP_002914291.1\|1200568_1200931_+	YgaC family protein	NA	NA	NA	NA
WP_002914289.1\|1201016_1201466_-	L-alanine exporter AlaE	NA	NA	NA	NA
WP_004217499.1\|1201584_1201770_-	hypothetical protein	NA	NA	NA	NA
WP_002914287.1\|1202194_1202596_+	DNA-binding protein StpA	NA	NA	NA	NA
WP_002914284.1\|1202668_1202848_-	hypothetical protein	NA	NA	NA	NA
WP_002914281.1\|1203053_1203956_+	lipid A hydroxylase LpxO	H8ZJK8	Ostreococcus_tauri_virus	2.6e-37	40.2
WP_002914279.1\|1203936_1204482_-	DUF2892 domain-containing protein	NA	NA	NA	NA
WP_002914277.1\|1204489_1204789_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002914274.1\|1204864_1205470_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
WP_004145715.1\|1205573_1206482_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004151036.1\|1206564_1208352_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_004151035.1\|1208615_1210136_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_000019473.1\|1210867_1211848_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_062955148.1\|1211893_1212892_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	2.2e-183	94.5
WP_004151019.1\|1212894_1213524_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.4e-61	54.5
WP_001397669.1\|1213646_1213889_+	hypothetical protein	A0A1S6KZZ6	Salmonella_phage	4.0e-38	98.8
WP_004151018.1\|1213921_1214431_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.1e-77	85.8
WP_004151017.1\|1214438_1214639_+	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	4.5e-19	68.8
WP_004144796.1\|1214602_1214941_+	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	6.2e-29	58.0
WP_004151016.1\|1215008_1215242_+	DUF2732 family protein	A0A1S6L021	Salmonella_phage	6.0e-31	90.9
WP_004151014.1\|1215241_1215469_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	5.1e-35	92.0
WP_004151013.1\|1215465_1216317_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	2.2e-115	75.4
WP_004151012.1\|1216313_1218698_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	87.9
WP_009483812.1\|1218927_1219179_+	hypothetical protein	NA	NA	NA	NA
WP_004152765.1\|1219178_1220663_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_004151011.1\|1220770_1220959_+	hypothetical protein	A0A1S6L006	Salmonella_phage	2.2e-23	90.3
WP_004151010.1\|1220970_1221204_+	DinI family protein	A0A0M4S6H1	Salmonella_phage	2.0e-34	96.1
WP_004151009.1\|1221299_1221983_-	hypothetical protein	NA	NA	NA	NA
WP_004151008.1\|1221969_1223049_-	hypothetical protein	NA	NA	NA	NA
WP_004151007.1\|1223048_1224050_-	hypothetical protein	NA	NA	NA	NA
WP_024940854.1\|1224571_1224841_+	hypothetical protein	D2IZW1	Enterococcus_phage	1.4e-15	41.3
WP_004151006.1\|1224897_1225941_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	3.1e-172	85.6
WP_019405037.1\|1225940_1227704_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	91.8
WP_004151004.1\|1227844_1228678_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	4.4e-100	77.6
WP_004151003.1\|1228694_1229747_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	6.8e-175	91.0
WP_004134644.1\|1229750_1230404_+\|terminase	terminase endonuclease subunit	A0A1S6KZX1	Salmonella_phage	1.9e-90	80.0
WP_004151002.1\|1230499_1230964_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.5e-73	85.7
WP_004151001.1\|1230963_1231167_+\|tail	tail protein X	E5G6M9	Salmonella_phage	9.8e-30	89.6
WP_004134639.1\|1231170_1231386_+	hypothetical protein	E5G6N0	Salmonella_phage	6.1e-30	88.7
WP_004151000.1\|1231366_1231876_+	lysozyme	E5G6N1	Salmonella_phage	1.6e-81	85.2
WP_004150999.1\|1231880_1232264_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.9e-18	45.4
WP_004150998.1\|1232260_1232689_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	7.1e-54	82.5
WP_085955118.1\|1232618_1232822_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	3.0e-23	77.6
WP_004150997.1\|1232784_1233207_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	8.2e-63	83.2
WP_004150996.1\|1233199_1233646_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.5e-54	72.3
WP_004150995.1\|1233668_1234535_-	hypothetical protein	NA	NA	NA	NA
WP_004150994.1\|1234629_1235202_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	1.4e-76	70.8
WP_004150993.1\|1235198_1235561_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	8.4e-48	85.6
WP_004150992.1\|1235547_1236456_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	1.9e-109	68.9
WP_004152935.1\|1236448_1237120_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	3.2e-61	58.9
WP_004150990.1\|1237121_1239071_+\|coat	spore coat protein CotH	Q6QI97	Burkholderia_phage	1.0e-06	38.9
1237112:1237131	attR	NA	NA	NA	NA
WP_004200602.1\|1239080_1240199_+	hypothetical protein	A0A248XD67	Klebsiella_phage	4.4e-55	38.0
WP_004150988.1\|1240250_1241324_+\|tail	phage tail protein	A0A1S6KZZ8	Salmonella_phage	6.6e-40	53.6
WP_004150987.1\|1241472_1242645_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.4e-207	91.5
WP_004150986.1\|1242654_1243170_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.4e-80	84.2
WP_004150985.1\|1243222_1243522_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	8.2e-33	78.0
WP_002896220.1\|1243536_1243656_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_004150984.1\|1243648_1246279_+\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	8.9e-115	41.9
WP_004150983.1\|1246275_1246761_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	5.2e-61	80.1
WP_004150982.1\|1246757_1247852_+	phage late control D family protein	E5G6Q3	Salmonella_phage	2.4e-170	83.6
WP_004150981.1\|1247918_1248137_+	positive regulator of late gene transcription	Q53ZE7	Salmonella_virus	1.9e-26	72.2
WP_004150980.1\|1248164_1248542_-	hypothetical protein	NA	NA	NA	NA
WP_002914164.1\|1249145_1249628_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.3e-29	47.4
WP_004188817.1\|1249738_1250215_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_002914161.1\|1250204_1250495_+	RnfH family protein	NA	NA	NA	NA
WP_002914160.1\|1250561_1250903_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_002914159.1\|1251050_1252712_-	DNA repair protein RecN	NA	NA	NA	NA
WP_002914158.1\|1252798_1253677_-	NAD(+) kinase	NA	NA	NA	NA
WP_002914155.1\|1253801_1254392_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_004149392.1\|1254511_1255798_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_002914153.1\|1255817_1256609_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_002914152.1\|1256772_1258137_+	signal recognition particle protein	NA	NA	NA	NA
WP_002914149.1\|1258396_1258645_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_004150977.1\|1258663_1259212_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_002914147.1\|1259243_1260011_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_3

1366033 : 1418775

Salmonella_phage(40.38%)

tail,transposase,integrase,terminase,holin

attL 1359368:1359382|attR 1389472:1389486

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1359368:1359382	attL	NA	NA	NA	NA
WP_004151980.1\|1366033_1367500_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-87	38.7
WP_004151979.1\|1367567_1369145_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_062955102.1\|1369336_1370587_+\|integrase	tyrosine-type recombinase/integrase	A0A1X9TCT6	Enterobacter_phage	5.8e-205	84.4
WP_063002073.1\|1370529_1370772_-	hypothetical protein	NA	NA	NA	NA
WP_004197356.1\|1370768_1371362_-	MT-A70 family protein	T1SA14	Salmonella_phage	6.3e-109	91.9
WP_062955103.1\|1371358_1372021_-	hypothetical protein	A0A059VF56	Pseudomonas_phage	1.2e-47	46.6
WP_048264082.1\|1372017_1372176_-	DUF1317 family protein	T1SAR0	Salmonella_phage	1.1e-17	78.8
WP_009485475.1\|1372168_1372462_-	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	4.0e-32	71.1
WP_062955104.1\|1372571_1372820_-	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	4.9e-31	76.8
WP_062955105.1\|1372868_1373750_-	recombinase RecT	T1SBJ5	Salmonella_phage	8.9e-136	84.3
WP_062955106.1\|1373746_1374568_-	exodeoxyribonuclease VIII	A0A193GYK2	Enterobacter_phage	1.8e-130	80.2
WP_004164029.1\|1374564_1374864_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	2.1e-20	54.5
WP_004144290.1\|1375230_1375812_-	helix-turn-helix transcriptional regulator	Q858D7	Salmonella_phage	7.1e-65	64.3
WP_004152538.1\|1375966_1376200_+	hypothetical protein	T1SAR5	Salmonella_phage	9.2e-24	66.2
WP_004152537.1\|1376346_1376556_+	hypothetical protein	A0A193GYW4	Enterobacter_phage	1.8e-26	78.3
WP_004207253.1\|1376555_1377323_+	hypothetical protein	A0A193GZ86	Enterobacter_phage	8.9e-140	91.4
WP_032418532.1\|1377319_1378105_+	replication protein	A0A193GYX1	Enterobacter_phage	3.7e-133	87.7
WP_048328152.1\|1378224_1378572_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	6.5e-50	82.6
WP_062955107.1\|1378764_1379175_+	hypothetical protein	A0A2P1MXC5	Escherichia_phage	4.3e-16	45.1
WP_032441402.1\|1379158_1379350_+	hypothetical protein	NA	NA	NA	NA
WP_032441401.1\|1379346_1379991_+	hypothetical protein	Q1MVG0	Enterobacteria_phage	8.0e-110	79.3
WP_072200041.1\|1380284_1380752_+	hypothetical protein	A0A2R2Z312	Escherichia_phage	1.3e-37	51.7
WP_029602865.1\|1380751_1381045_+	hypothetical protein	Q6UAT9	Klebsiella_phage	2.7e-44	86.6
WP_050491799.1\|1381041_1381662_+	hypothetical protein	Q1MVF7	Enterobacteria_phage	1.0e-29	40.7
WP_032441458.1\|1381661_1381865_+	hypothetical protein	NA	NA	NA	NA
WP_023339258.1\|1381857_1382196_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	1.8e-44	80.0
WP_004152765.1\|1382292_1383777_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_009483812.1\|1383776_1384028_-	hypothetical protein	NA	NA	NA	NA
WP_032418540.1\|1384179_1384437_+	hypothetical protein	NA	NA	NA	NA
WP_032441400.1\|1384514_1385099_+\|terminase	terminase small subunit	T1SBI8	Salmonella_phage	2.2e-90	88.6
WP_062955142.1\|1385095_1386571_+	hypothetical protein	Q858H3	Salmonella_phage	6.4e-280	93.1
WP_004200550.1\|1386614_1386986_-	hypothetical protein	A0A0F6TJP2	Escherichia_coli_O157_typing_phage	3.7e-59	91.9
WP_072354015.1\|1387035_1387278_+	hypothetical protein	NA	NA	NA	NA
WP_004141368.1\|1387739_1387946_+	hypothetical protein	T1SA67	Salmonella_phage	4.8e-08	88.2
WP_032441398.1\|1387960_1389643_+\|tail	tail protein	A0A0F6TJD8	Escherichia_coli_O157_typing_phage	1.5e-264	84.4
1389472:1389486	attR	NA	NA	NA	NA
WP_004152446.1\|1389639_1389936_+	hypothetical protein	T1SBI9	Salmonella_phage	1.2e-33	70.4
WP_032441397.1\|1389938_1390619_+	peptidase	G9L6C4	Escherichia_phage	6.1e-76	84.0
WP_004200546.1\|1390633_1391620_+	hypothetical protein	A0A193GZ49	Enterobacter_phage	2.5e-179	94.2
WP_020953461.1\|1391673_1392111_+	hypothetical protein	A0A193GYT9	Enterobacter_phage	1.3e-66	91.7
WP_062955141.1\|1392121_1392463_+	hypothetical protein	G9L6C7	Escherichia_phage	2.4e-36	70.8
WP_004152441.1\|1392513_1392837_+	hypothetical protein	G9L6C8	Escherichia_phage	5.3e-46	85.0
WP_062955139.1\|1392836_1393442_+	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	4.0e-87	77.0
WP_062955138.1\|1393441_1395919_+	hypothetical protein	Q858G3	Salmonella_phage	0.0e+00	84.4
WP_004152438.1\|1395918_1396383_+	hypothetical protein	Q858G2	Salmonella_phage	1.5e-70	81.2
WP_032447858.1\|1396382_1396922_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	8.0e-71	80.0
WP_062955137.1\|1396932_1399467_+	hypothetical protein	Q858G0	Salmonella_phage	0.0e+00	84.1
WP_062955136.1\|1399466_1401377_+	hypothetical protein	Q858F9	Salmonella_phage	5.4e-287	82.7
WP_062955135.1\|1401376_1404133_+	hypothetical protein	Q858F8	Salmonella_phage	0.0e+00	95.4
WP_062955134.1\|1404129_1404324_+	hypothetical protein	Q858F7	Salmonella_phage	6.5e-15	67.2
WP_071787028.1\|1404358_1404511_-	transmembrane anchored protein	G9L6D9	Escherichia_phage	2.5e-14	83.7
WP_062955133.1\|1404609_1404906_-	hypothetical protein	T1SA06	Salmonella_phage	6.9e-24	63.9
WP_062955131.1\|1407733_1407997_+	hypothetical protein	NA	NA	NA	NA
WP_123766426.1\|1408037_1408865_-	hypothetical protein	NA	NA	NA	NA
WP_000019445.1\|1409284_1410265_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.0e-185	99.4
WP_000608644.1\|1411133_1412396_-\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
WP_077265603.1\|1413504_1414821_+	right-handed parallel beta-helix repeat-containing protein	A0A0K2FI18	Enterobacter_phage	2.3e-34	32.3
WP_062955010.1\|1414907_1415312_+	hypothetical protein	T1SA79	Salmonella_phage	8.7e-54	81.1
WP_023339240.1\|1415298_1415604_+\|holin	phage holin family protein	A0A193GYK3	Enterobacter_phage	2.7e-39	81.4
WP_062955009.1\|1415593_1416223_+	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	1.8e-90	76.9
WP_062955008.1\|1416219_1416720_+	DUF2514 domain-containing protein	Q858E9	Salmonella_phage	1.3e-59	76.9
WP_004152009.1\|1416906_1418775_-	sulfatase-like hydrolase/transferase	A0A2P0VMN7	Tetraselmis_virus	2.6e-07	22.6

DBSCAN-SWA_4

1751126 : 1758031

Planktothrix_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072353998.1\|1751126_1751990_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.4e-10	27.5
WP_094818808.1\|1752000_1752774_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.1e-26	36.7
WP_002912636.1\|1753014_1753908_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_004144192.1\|1754153_1755515_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004175198.1\|1755833_1756556_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_072353997.1\|1756552_1758031_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	1.9e-29	28.3

DBSCAN-SWA_5

1803009 : 1812400

Escherichia_phage(37.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004180506.1\|1803009_1804425_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.4e-53	31.0
WP_039819506.1\|1804446_1805817_+	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	6.4e-32	25.9
WP_039819536.1\|1805971_1807036_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	9.8e-105	54.7
WP_023278825.1\|1807049_1807919_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.7e-110	66.7
WP_004175259.1\|1807950_1808841_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.8e-28	34.2
WP_039819508.1\|1808855_1809410_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	2.9e-52	58.2
WP_072353991.1\|1809589_1810756_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	9.1e-112	54.7
WP_000019445.1\|1811419_1812400_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.0e-185	99.4

DBSCAN-SWA_6

2804600 : 2815488

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004151613.1\|2804600_2807708_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
WP_004151612.1\|2807762_2809028_+	MFS transporter	NA	NA	NA	NA
WP_001620097.1\|2809058_2810147_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_002904006.1\|2810233_2810494_-	hypothetical protein	A0A077SK33	Escherichia_phage	3.5e-40	97.7
WP_004176269.1\|2810791_2811652_+	class A broad-spectrum beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002210513.1\|2811672_2812434_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_023148136.1\|2812424_2812658_+	hypothetical protein	NA	NA	NA	NA
WP_002903955.1\|2812695_2813598_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_048260141.1\|2813609_2814875_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	3.9e-233	99.3
WP_002210516.1\|2814867_2815488_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_7

3042052 : 3080518

uncultured_Caudovirales_phage(32.65%)

terminase,integrase

attL 3071631:3071645|attR 3077640:3077654

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152576.1\|3042052_3042919_-	hypothetical protein	A0A2H4IYR0	uncultured_Caudovirales_phage	1.9e-34	64.5
WP_004152575.1\|3042918_3043692_-	DUF2612 domain-containing protein	A0A2H4J1A9	uncultured_Caudovirales_phage	2.8e-77	54.4
WP_004152574.1\|3043688_3044885_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	3.9e-158	72.9
WP_004152573.1\|3044884_3045238_-	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	2.3e-50	80.3
WP_004152572.1\|3045239_3045893_-	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	1.0e-59	63.5
WP_004152571.1\|3045946_3046513_-	hypothetical protein	NA	NA	NA	NA
WP_004173705.1\|3046549_3046735_+	hypothetical protein	NA	NA	NA	NA
WP_004152570.1\|3046787_3047129_-	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.8e-23	46.6
WP_004152569.1\|3047128_3048151_-	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	9.2e-100	54.2
WP_004152568.1\|3048153_3048456_-	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	2.0e-26	55.2
WP_004152567.1\|3048456_3049056_-	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	9.9e-54	57.6
WP_004152566.1\|3049055_3051059_-	lytic transglycosylase domain-containing protein	A0A2H4J9N7	uncultured_Caudovirales_phage	1.2e-247	63.6
WP_004152565.1\|3051048_3051201_-	hypothetical protein	A0A2H4J1A2	uncultured_Caudovirales_phage	7.6e-19	88.0
WP_004152564.1\|3051236_3051662_-	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	2.6e-40	63.4
WP_004199809.1\|3051665_3052106_-	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	3.3e-62	80.1
WP_004152177.1\|3052116_3053262_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	6.3e-166	76.9
WP_004152176.1\|3053265_3053706_-	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.6e-40	51.7
WP_001116156.1\|3053800_3054187_-	hypothetical protein	A0A2H4J1A4	uncultured_Caudovirales_phage	1.1e-48	78.2
WP_000834982.1\|3054186_3054693_-	hypothetical protein	NA	NA	NA	NA
WP_000113538.1\|3054689_3055109_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	3.3e-40	60.7
WP_000725700.1\|3055077_3055359_-	hypothetical protein	NA	NA	NA	NA
WP_001132269.1\|3055398_3056340_-	DUF2184 domain-containing protein	A0A2H4J191	uncultured_Caudovirales_phage	1.7e-137	77.1
WP_000528476.1\|3056351_3056846_-	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	4.2e-50	62.7
WP_004199270.1\|3056849_3058052_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	2.6e-106	54.1
WP_004152174.1\|3058103_3058652_-	hypothetical protein	A0A0M4REK0	Salmonella_phage	3.0e-49	56.3
WP_004152173.1\|3058707_3060159_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	3.8e-192	68.8
WP_004152172.1\|3060396_3061797_-\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	9.4e-188	69.0
WP_004152171.1\|3061747_3062500_-	hypothetical protein	A0A077KBY7	Edwardsiella_phage	4.0e-12	66.0
WP_004152170.1\|3062601_3062922_-	hypothetical protein	NA	NA	NA	NA
WP_064754420.1\|3063014_3063272_-	hypothetical protein	S5FXQ4	Shigella_phage	2.3e-23	70.9
WP_004153952.1\|3063156_3063546_-	lipase chaperone	A0A192Y6H8	Salmonella_phage	9.4e-21	49.2
WP_004152169.1\|3063542_3064073_-	lysozyme	K7PLY1	Enterobacteria_phage	2.7e-79	77.1
WP_004146526.1\|3064075_3064324_-	hypothetical protein	NA	NA	NA	NA
WP_004152167.1\|3064729_3065512_-	antitermination protein	F1C595	Cronobacter_phage	7.2e-113	76.8
WP_004198239.1\|3065508_3065985_-	hypothetical protein	A0A286N2Q1	Klebsiella_phage	1.8e-90	100.0
WP_004198233.1\|3065981_3066944_-	zinc-binding domain of primase-helicase family protein	A0A286N2Q0	Klebsiella_phage	4.8e-183	99.4
WP_004198228.1\|3066945_3068604_-	DEAD/DEAH box helicase	A0A286N2P9	Klebsiella_phage	0.0e+00	96.0
WP_004152163.1\|3068912_3069206_-	hypothetical protein	A0A286S2B5	Klebsiella_phage	2.8e-38	97.6
WP_004152162.1\|3069180_3069402_-	helix-turn-helix transcriptional regulator	A0A286S2C1	Klebsiella_phage	3.0e-32	100.0
WP_004152161.1\|3069499_3070168_+	LexA family transcriptional regulator	A0A286S2B2	Klebsiella_phage	2.4e-125	99.5
WP_004152160.1\|3070338_3070653_+	hypothetical protein	A0A286S1T9	Klebsiella_phage	1.0e-49	100.0
WP_004152159.1\|3070645_3070834_+	hypothetical protein	A0A286S1P8	Klebsiella_phage	4.6e-26	100.0
WP_004152158.1\|3071003_3071369_+	hypothetical protein	A0A286S1Q6	Klebsiella_phage	6.9e-58	99.2
WP_004152157.1\|3071361_3071616_+	hypothetical protein	A0A286SGR4	Klebsiella_phage	3.1e-41	97.6
WP_004177208.1\|3071587_3071806_+	hypothetical protein	A0A286S1P6	Klebsiella_phage	6.6e-32	98.6
3071631:3071645	attL	NA	NA	NA	NA
WP_004152156.1\|3071802_3072228_+	hypothetical protein	A0A286S1S2	Klebsiella_phage	3.5e-53	77.9
WP_004152155.1\|3072224_3072419_+	hypothetical protein	NA	NA	NA	NA
WP_004152154.1\|3072415_3073243_+	hypothetical protein	Q8W654	Enterobacteria_phage	5.5e-111	84.0
WP_004152153.1\|3073347_3073866_+	hypothetical protein	A0A286S1S7	Klebsiella_phage	1.7e-94	98.8
WP_004154298.1\|3073871_3074582_+	DNA-binding protein	A0A286S260	Klebsiella_phage	2.1e-111	88.3
WP_004152151.1\|3074571_3074796_+	hypothetical protein	A0A286S2B3	Klebsiella_phage	3.1e-29	89.2
WP_004152150.1\|3074792_3075005_+	hypothetical protein	A0A286S2B6	Klebsiella_phage	3.4e-33	98.6
WP_004152149.1\|3075001_3075481_+	hypothetical protein	NA	NA	NA	NA
WP_004152148.1\|3075659_3075902_+	hypothetical protein	A0A0M4RTZ2	Salmonella_phage	2.2e-20	73.8
WP_004152147.1\|3075882_3077064_-\|integrase	site-specific integrase	A0A0M4QX09	Salmonella_phage	5.6e-202	84.2
WP_016197745.1\|3077260_3077809_+	DJ-1/PfpI family protein	NA	NA	NA	NA
3077640:3077654	attR	NA	NA	NA	NA
WP_004152145.1\|3078007_3079540_-	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	1.1e-21	30.0
WP_004152144.1\|3079756_3080518_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.4e-20	32.5

DBSCAN-SWA_8

3113451 : 3144495

Enterobacteria_phage(37.5%)

transposase,integrase,holin

attL 3113233:3113248|attR 3141801:3141816

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3113233:3113248	attL	NA	NA	NA	NA
WP_002901815.1\|3113451_3114123_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	4.5e-79	59.6
WP_071531199.1\|3114309_3115137_+	FRG domain-containing protein	A0A1S6KZX9	Salmonella_phage	8.4e-19	30.2
WP_002901813.1\|3115212_3116478_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	9.6e-208	82.7
WP_002901812.1\|3116479_3116899_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.4e-35	57.5
WP_004152765.1\|3116978_3118463_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_009483812.1\|3118462_3118714_-	hypothetical protein	NA	NA	NA	NA
WP_004152776.1\|3119360_3119783_-	hypothetical protein	K7P834	Enterobacteria_phage	3.6e-26	45.3
WP_001067855.1\|3120375_3121080_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000679427.1\|3121695_3122043_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_001261740.1\|3122206_3122998_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_001067855.1\|3123979_3124684_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_062955100.1\|3124720_3125008_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	4.4e-36	95.4
WP_004218565.1\|3125004_3125544_-	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	3.3e-101	98.9
WP_024940884.1\|3125540_3125840_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	4.5e-47	100.0
WP_004232548.1\|3126489_3127179_-	antiterminator-like protein	I6PDF8	Cronobacter_phage	2.1e-55	53.1
WP_004218534.1\|3127178_3127319_-	YlcG family protein	NA	NA	NA	NA
WP_004218533.1\|3127315_3127954_-	hypothetical protein	H6WRY9	Salmonella_phage	3.2e-74	69.8
WP_004218532.1\|3127946_3128615_-	serine/threonine protein phosphatase	K7P6H8	Enterobacteria_phage	1.4e-104	78.7
WP_004243010.1\|3128611_3128779_-	NinE family protein	K7P7K0	Enterobacteria_phage	4.6e-09	62.5
WP_004218531.1\|3128759_3129227_-	recombination protein NinB	Q8VNP6	Enterobacteria_phage	3.4e-33	45.8
WP_004218530.1\|3129747_3130776_+	hypothetical protein	NA	NA	NA	NA
WP_004196831.1\|3130983_3131229_-	hypothetical protein	NA	NA	NA	NA
WP_004218528.1\|3131284_3131587_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_004201118.1\|3131583_3132432_-	ATP-binding protein	K7PLU3	Enterobacteria_phage	5.1e-88	60.1
WP_004201117.1\|3132428_3133289_-	replication protein	K7PGT1	Enterobacteria_phage	1.0e-59	53.3
WP_001548453.1\|3133374_3133596_-	hypothetical protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
WP_004201115.1\|3133636_3133864_-	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.4e-24	77.1
WP_004201113.1\|3133975_3134674_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	3.7e-108	84.1
WP_019405077.1\|3134696_3134816_+	hypothetical protein	NA	NA	NA	NA
WP_004201109.1\|3134961_3136038_+	ParA family protein	H2BD62	Pseudomonas_phage	9.1e-58	37.9
WP_004201108.1\|3136119_3136323_-	hypothetical protein	A0A192Y6Q5	Salmonella_phage	3.9e-18	71.6
WP_004135674.1\|3136751_3136946_+	hypothetical protein	NA	NA	NA	NA
WP_004201105.1\|3137034_3137319_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.1e-39	79.8
WP_004201103.1\|3137334_3138180_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	1.8e-69	59.2
WP_088224434.1\|3138176_3138464_+	hypothetical protein	NA	NA	NA	NA
WP_004201102.1\|3138465_3139146_+	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	8.2e-121	91.2
WP_004151898.1\|3139142_3139571_+	hypothetical protein	M9NYX4	Enterobacteria_phage	7.5e-64	80.3
WP_004151899.1\|3139567_3140230_+	DNA methyltransferase	G8C7S6	Escherichia_phage	2.7e-105	84.6
WP_004190725.1\|3140226_3140541_+	hypothetical protein	K7PM28	Enterobacteria_phage	1.6e-10	50.8
WP_004153574.1\|3140437_3141625_-\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	1.1e-120	52.4
WP_004151901.1\|3141801_3142692_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
3141801:3141816	attR	NA	NA	NA	NA
WP_004140266.1\|3142691_3143684_+	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
WP_004140269.1\|3143685_3144495_+	peptide ABC transporter ATP-binding protein SapF	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9

DBSCAN-SWA_9

3272167 : 3401756

152

Klebsiella_phage(31.87%)

portal,capsid,tRNA,tail,head,integrase,protease,terminase,lysis,holin

attL 3298970:3298984|attR 3399567:3399581

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002901088.1\|3272167_3272668_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_002901080.1\|3272784_3273231_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_002901073.1\|3273214_3274006_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004150777.1\|3274107_3275292_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_004140471.1\|3275323_3276016_-	CTP synthase	NA	NA	NA	NA
WP_004150778.1\|3276161_3276671_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_004150779.1\|3276657_3277014_+	DUF488 domain-containing protein	NA	NA	NA	NA
WP_004150780.1\|3277003_3277243_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_004150781.1\|3277543_3278557_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.4e-12	29.0
WP_004150782.1\|3278614_3278716_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_099119317.1\|3278715_3278790_+	protein YoaJ	NA	NA	NA	NA
WP_004140488.1\|3278907_3279033_+	hypothetical protein	NA	NA	NA	NA
WP_004140489.1\|3279092_3279356_-	DUF2534 family protein	NA	NA	NA	NA
WP_004150783.1\|3279486_3280125_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_004148038.1\|3280214_3281129_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4
WP_004150784.1\|3281790_3282834_-	type II asparaginase	NA	NA	NA	NA
WP_004150785.1\|3283136_3284345_+	HD domain-containing protein	NA	NA	NA	NA
WP_004150787.1\|3284418_3286203_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.8e-17	36.1
WP_004150788.1\|3286209_3287100_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004140497.1\|3287220_3288729_+	UbiD family decarboxylase	NA	NA	NA	NA
WP_004150790.1\|3289039_3289726_-	EAL domain-containing protein	NA	NA	NA	NA
WP_004140501.1\|3290123_3290303_-	hypothetical protein	NA	NA	NA	NA
WP_004150791.1\|3290342_3290975_-	DNA-binding protein	NA	NA	NA	NA
WP_004140506.1\|3291541_3291739_+	hypothetical protein	NA	NA	NA	NA
WP_004140509.1\|3291854_3292865_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_004150793.1\|3292861_3294268_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_004140512.1\|3294323_3295211_-	manganese catalase family protein	NA	NA	NA	NA
WP_004140514.1\|3295227_3295734_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004150794.1\|3295760_3296255_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004150795.1\|3296345_3296531_-	general stress protein	NA	NA	NA	NA
WP_004140529.1\|3297152_3298346_+	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
WP_004140530.1\|3298458_3298686_+	DUF1272 domain-containing protein	NA	NA	NA	NA
3298970:3298984	attL	NA	NA	NA	NA
WP_004150797.1\|3299122_3299446_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_004150798.1\|3299438_3299831_+	amino acid-binding protein	NA	NA	NA	NA
WP_004150799.1\|3299827_3300541_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004892953.1\|3300813_3300966_-	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-18	92.0
WP_023328083.1\|3301120_3302617_-\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	1.4e-125	63.7
WP_062955111.1\|3302685_3315390_-	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	47.1
WP_023328085.1\|3315452_3316046_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	8.0e-80	76.6
WP_047666390.1\|3316072_3316495_-	hypothetical protein	J9Q806	Salmonella_phage	5.9e-29	50.0
WP_047666389.1\|3316536_3317247_-	peptidase P60	Q6UAW4	Klebsiella_phage	1.9e-136	90.3
WP_023328087.1\|3317248_3318004_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	4.6e-125	80.5
WP_023328088.1\|3318000_3318339_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	1.4e-57	88.4
WP_023328089.1\|3318338_3321674_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	88.3
WP_071836352.1\|3321673_3321892_-	hypothetical protein	Q6UAW9	Klebsiella_phage	5.4e-34	90.5
WP_014228914.1\|3321906_3322272_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
WP_023328090.1\|3322329_3322791_-	hypothetical protein	Q6UAX0	Klebsiella_phage	7.8e-67	83.7
WP_023328091.1\|3322822_3323224_-	hypothetical protein	Q6UAX1	Klebsiella_phage	2.3e-62	94.0
WP_017880258.1\|3323220_3323610_-	hypothetical protein	Q6UAX2	Klebsiella_phage	9.6e-58	86.0
WP_023328092.1\|3323590_3323929_-\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	2.8e-53	90.2
WP_020317538.1\|3323925_3324243_-\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	1.5e-45	89.8
WP_049010370.1\|3324223_3324484_-	hypothetical protein	Q6UAX5	Klebsiella_phage	7.4e-22	60.5
WP_023328094.1\|3324542_3325829_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	9.8e-216	89.0
WP_014907815.1\|3325906_3326827_-	S49 family peptidase	Q6UAX7	Klebsiella_phage	9.6e-149	88.2
WP_023279520.1\|3326863_3328123_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	1.8e-222	89.8
WP_017898992.1\|3328122_3328302_-	hypothetical protein	Q6UAX9	Klebsiella_phage	3.1e-11	57.6
WP_021462603.1\|3328295_3330017_-\|terminase	terminase large subunit	Q7Y413	Yersinia_phage	1.5e-190	57.4
WP_012542168.1\|3330016_3330451_-\|terminase	phage terminase small subunit P27 family	A0A1J0GV10	Halomonas_phage	9.4e-30	61.9
WP_014907818.1\|3330699_3331131_-	hypothetical protein	Q6UAS0	Klebsiella_phage	1.8e-41	61.6
WP_023297386.1\|3331127_3331451_-	hypothetical protein	NA	NA	NA	NA
WP_032428746.1\|3331402_3331765_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	1.2e-57	83.3
WP_032749552.1\|3332091_3332316_+	hypothetical protein	NA	NA	NA	NA
WP_049115059.1\|3332354_3332792_-	hypothetical protein	NA	NA	NA	NA
WP_016160650.1\|3333741_3334092_-	hypothetical protein	R9TPM9	Aeromonas_phage	7.9e-11	38.1
WP_032432826.1\|3334088_3334586_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	1.1e-77	84.6
WP_016160648.1\|3334585_3334801_-\|lysis	phage S lysis protein	A5LH82	Enterobacteria_phage	2.7e-30	88.7
WP_004147999.1\|3335718_3335868_+	small membrane protein	NA	NA	NA	NA
WP_004147997.1\|3336605_3336809_+	hypothetical protein	NA	NA	NA	NA
WP_025861432.1\|3337052_3337655_-	hypothetical protein	H9C175	Pectobacterium_phage	1.1e-76	68.6
WP_062955112.1\|3337671_3338703_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.7e-96	49.6
WP_017898980.1\|3338702_3338906_-	hypothetical protein	NA	NA	NA	NA
WP_025861428.1\|3338902_3339295_-	DNA-binding protein	K7PHB4	Enterobacterial_phage	8.0e-12	36.6
WP_077255782.1\|3339335_3339626_-	hypothetical protein	H6WRY6	Salmonella_phage	8.0e-17	56.9
WP_025368263.1\|3339637_3339871_-	DinI family protein	K7PM44	Enterobacteria_phage	3.7e-25	71.1
WP_004152765.1\|3339949_3341434_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_009483812.1\|3341433_3341685_-	hypothetical protein	NA	NA	NA	NA
WP_062954975.1\|3342274_3343636_-	deoxyguanosinetriphosphate triphosphohydrolase family protein	NA	NA	NA	NA
WP_062954976.1\|3343809_3344523_-	hypothetical protein	NA	NA	NA	NA
WP_062954989.1\|3344874_3345744_+	hypothetical protein	NA	NA	NA	NA
WP_062954977.1\|3345832_3347224_+	hypothetical protein	NA	NA	NA	NA
WP_032443841.1\|3347572_3348013_-	hypothetical protein	NA	NA	NA	NA
WP_047667474.1\|3348026_3348491_-	replication protein	A0A0U2JGJ0	Escherichia_phage	4.1e-63	72.2
WP_077265602.1\|3348483_3349488_-	DNA-binding protein	A0A0U2RT81	Escherichia_phage	1.0e-31	40.0
WP_046622349.1\|3349547_3350102_-	hypothetical protein	NA	NA	NA	NA
WP_071561166.1\|3350104_3350329_-	Cro/Cl family transcriptional regulator	H6WRX5	Salmonella_phage	1.3e-19	62.5
WP_077257742.1\|3350417_3350855_+	helix-turn-helix domain-containing protein	H6WRX4	Salmonella_phage	1.3e-39	62.2
WP_040234937.1\|3351176_3351491_-	hypothetical protein	NA	NA	NA	NA
WP_099143961.1\|3351653_3351872_+	hypothetical protein	NA	NA	NA	NA
WP_023279538.1\|3351881_3352076_+	DUF1482 family protein	NA	NA	NA	NA
WP_014228879.1\|3352118_3352463_+	transcriptional regulator	NA	NA	NA	NA
WP_062954978.1\|3352604_3354743_+	exodeoxyribonuclease VIII	S4TNL0	Salmonella_phage	5.6e-99	42.7
WP_012542206.1\|3354795_3355041_+	excisionase	NA	NA	NA	NA
WP_032418030.1\|3355021_3356149_+\|integrase	tyrosine-type recombinase/integrase	O21925	Phage_21	4.4e-119	58.4
WP_094818795.1\|3356266_3356449_-	isocitrate dehydrogenase	Q77Z09	Phage_21	3.7e-20	90.7
WP_049182670.1\|3356830_3357592_-	hypothetical protein	Q6J1W3	Lactobacillus_phage	2.5e-09	29.4
WP_094818794.1\|3358626_3359352_-	hypothetical protein	NA	NA	NA	NA
WP_094818793.1\|3359403_3360669_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	8.1e-207	82.9
WP_042934076.1\|3360671_3361091_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.2e-34	56.7
WP_064155591.1\|3361169_3361412_+	DinI family protein	Q6UAW0	Klebsiella_phage	1.6e-31	81.0
WP_031592310.1\|3361411_3361654_+	hypothetical protein	NA	NA	NA	NA
WP_094818792.1\|3362429_3363182_-	hypothetical protein	NA	NA	NA	NA
WP_094818791.1\|3363192_3365361_-	hypothetical protein	B5TAB2	Burkholderia_phage	6.7e-100	45.1
WP_094818790.1\|3365438_3368507_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	66.3
WP_094818789.1\|3368503_3368890_-	nitrite transporter	H2BD94	Pseudomonas_phage	4.0e-16	35.7
WP_038433285.1\|3368897_3369380_-	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	8.5e-56	67.7
WP_032420722.1\|3369366_3369840_-	hypothetical protein	A0A286S298	Klebsiella_phage	3.9e-53	63.5
WP_094818788.1\|3369839_3372536_-\|tail	phage tail tape measure protein	K7PKR0	Enterobacteria_phage	4.9e-201	62.4
WP_032420719.1\|3372516_3372834_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	1.4e-19	51.5
WP_025714420.1\|3372854_3373250_-\|tail	phage tail protein	M9NZD7	Enterobacteria_phage	1.9e-08	27.5
WP_023304948.1\|3373292_3373775_-	hypothetical protein	M9NYX0	Enterobacteria_phage	5.7e-60	68.6
WP_020804325.1\|3373782_3374181_-\|tail	phage tail protein	K7PHM6	Enterobacterial_phage	3.2e-40	57.8
WP_048291628.1\|3374177_3374729_-\|tail	phage tail protein	K7P7A8	Enterobacteria_phage	1.6e-53	67.3
WP_020317349.1\|3374718_3375012_-	sugar ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_049186541.1\|3375004_3375331_-	DUF2190 family protein	K7PJY3	Enterobacterial_phage	4.0e-33	66.4
WP_094818787.1\|3375411_3377427_-\|protease	Clp protease ClpP	K7PKX4	Enterobacterial_phage	0.0e+00	84.2
WP_020317329.1\|3377371_3378871_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	1.1e-247	83.6
WP_094818786.1\|3378867_3379083_-	hypothetical protein	A5LH28	Enterobacteria_phage	6.5e-24	75.7
WP_094818785.1\|3379079_3381188_-\|terminase	phage terminase large subunit family protein	K7PH52	Enterobacterial_phage	0.0e+00	83.5
WP_014228567.1\|3381187_3381679_-	DUF1441 family protein	K7PJY2	Enterobacterial_phage	6.4e-67	84.0
WP_072002796.1\|3381999_3382185_-	hypothetical protein	Q8W634	Enterobacteria_phage	2.4e-11	61.1
WP_108918987.1\|3382252_3382513_-	hypothetical protein	NA	NA	NA	NA
WP_004216876.1\|3382739_3382985_-	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	3.0e-33	96.3
WP_116723292.1\|3383374_3383563_-	hypothetical protein	A0A286SGR9	Klebsiella_phage	6.3e-23	89.8
WP_094818783.1\|3383513_3383789_-	hypothetical protein	G8C7W1	Escherichia_phage	8.6e-13	46.7
WP_094818782.1\|3383785_3384133_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	3.0e-39	78.3
WP_019704505.1\|3384129_3384669_-	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	5.7e-101	98.3
WP_024176410.1\|3384665_3384965_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	4.5e-39	83.8
WP_040210598.1\|3385134_3385374_-	hypothetical protein	NA	NA	NA	NA
WP_094818781.1\|3385524_3386103_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	2.2e-50	56.7
WP_094818780.1\|3386116_3387097_-	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	2.7e-133	67.5
WP_065519871.1\|3387109_3387487_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	3.9e-48	73.6
WP_094818779.1\|3387496_3388306_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	5.9e-110	68.9
WP_094818778.1\|3388302_3389217_-	transcriptional regulator	H2DE83	Erwinia_phage	1.8e-30	60.6
WP_023317571.1\|3389173_3389386_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	2.2e-16	72.7
WP_004213338.1\|3389623_3390085_-	hypothetical protein	K7PJS5	Enterobacterial_phage	1.7e-69	88.2
WP_024176406.1\|3390110_3390320_-	cell division protein	NA	NA	NA	NA
WP_019705289.1\|3390414_3391059_+	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	8.2e-38	40.7
WP_094818777.1\|3391358_3392282_+	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	1.5e-104	62.9
WP_040186300.1\|3392367_3392667_+	hypothetical protein	K7PJS4	Enterobacterial_phage	1.0e-14	47.8
WP_094818776.1\|3392666_3393452_+	hypothetical protein	A4JX52	Burkholderia_virus	1.3e-61	50.6
WP_094818775.1\|3393579_3394071_+	hypothetical protein	E7C9P6	Salmonella_phage	5.1e-32	53.4
WP_064151808.1\|3394067_3394331_+	DUF4752 family protein	T1S9K2	Salmonella_phage	1.1e-30	78.0
WP_094818774.1\|3394323_3394968_+	hypothetical protein	A0A2R2Z312	Escherichia_phage	1.1e-39	42.8
WP_004141386.1\|3394967_3395180_+	hypothetical protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	8.1e-11	45.5
WP_038435237.1\|3395975_3396194_+	hypothetical protein	G8C7S3	Escherichia_phage	3.0e-08	51.7
WP_071562415.1\|3396193_3396466_+	hypothetical protein	K7PKM4	Enterobacterial_phage	4.4e-09	40.4
WP_000089156.1\|3396494_3396731_+	excisionase	NA	NA	NA	NA
WP_000741346.1\|3396720_3397863_+\|integrase	tyrosine-type recombinase/integrase	Q77Z02	Phage_21	9.1e-173	82.2
WP_094818773.1\|3397976_3399227_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	6.7e-20	92.6
WP_004150801.1\|3399467_3400118_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
3399567:3399581	attR	NA	NA	NA	NA
WP_004150802.1\|3400134_3400593_+	NUDIX hydrolase	NA	NA	NA	NA
WP_004150803.1\|3400649_3401756_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_10

3617917 : 3710868

Salmonella_phage(56.9%)

portal,capsid,tRNA,tail,plate,protease,head,integrase,terminase,lysis

attL 3673443:3673461|attR 3710943:3710961

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002898139.1\|3617917_3619210_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.3e-94	44.7
WP_002898137.1\|3619300_3620644_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	7.3e-81	40.8
WP_002898132.1\|3620652_3621264_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_004150846.1\|3621386_3625640_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	5.2e-88	49.2
WP_000228469.1\|3625775_3626270_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_004141839.1\|3626775_3627771_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	3.3e-62	44.0
WP_002898017.1\|3627885_3629652_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	2.3e-21	25.9
WP_004150847.1\|3629652_3631374_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_002898014.1\|3631418_3632120_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3632473_3632692_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|3632812_3635092_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|3635122_3635440_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3635765_3635987_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_004150848.1\|3636063_3638004_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_002896440.1\|3638000_3639116_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
WP_002896437.1\|3639262_3640921_-	ATP-dependent endonuclease	NA	NA	NA	NA
WP_002896434.1\|3641340_3642036_+	aquaporin Z	NA	NA	NA	NA
WP_004147773.1\|3642151_3643051_+	lysine exporter LysO family protein	NA	NA	NA	NA
WP_002896412.1\|3643194_3644847_+	hydroxylamine reductase	NA	NA	NA	NA
WP_002896410.1\|3644857_3645826_+	NADH oxidoreductase	NA	NA	NA	NA
WP_002896408.1\|3646037_3646472_-	DoxX family protein	NA	NA	NA	NA
WP_002896406.1\|3646623_3648342_+	ubiquinone-dependent pyruvate dehydrogenase	NA	NA	NA	NA
WP_002896404.1\|3648380_3649382_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_002896401.1\|3649392_3650835_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002896399.1\|3650922_3651936_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_002896397.1\|3651932_3652763_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	4.1e-05	31.6
WP_004150851.1\|3652794_3653934_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_002896394.1\|3654811_3655327_+	lipoprotein	NA	NA	NA	NA
WP_032419144.1\|3655553_3656282_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	1.2e-29	37.1
WP_002896390.1\|3656302_3657034_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002896386.1\|3657040_3657757_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_004150852.1\|3657756_3658425_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_002896384.1\|3658608_3659340_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002896382.1\|3659382_3660855_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	7.9e-28	31.8
WP_002896380.1\|3660851_3661568_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.1e-34	36.9
WP_002896378.1\|3661646_3662774_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A2K5B251	Erysipelothrix_phage	1.3e-19	25.6
WP_002896376.1\|3662815_3663304_-	DUF2593 family protein	NA	NA	NA	NA
WP_002896372.1\|3663361_3664207_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_002896371.1\|3664203_3665157_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_002896370.1\|3665167_3666301_-	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	2.2e-30	34.9
WP_002896368.1\|3666464_3667577_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_002896365.1\|3667925_3668405_-	YbjN domain-containing protein	NA	NA	NA	NA
WP_002896363.1\|3668493_3669396_-	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	2.0e-34	35.3
WP_002896354.1\|3670217_3670505_-	YbjC family protein	NA	NA	NA	NA
WP_002896352.1\|3670707_3670971_+	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	1.6e-27	73.1
WP_002896351.1\|3670977_3671361_-	membrane protein	NA	NA	NA	NA
WP_004179131.1\|3671627_3673313_+	aspartate:alanine antiporter	NA	NA	NA	NA
3673443:3673461	attL	NA	NA	NA	NA
WP_000972391.1\|3673532_3673751_-	transcriptional activator Ogr/delta	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_002896225.1\|3673842_3674943_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	4.9e-176	87.4
WP_002896224.1\|3674939_3675425_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	7.2e-63	75.6
WP_002896222.1\|3675421_3678049_-\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	5.6e-117	42.0
WP_002896220.1\|3678041_3678161_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_002896204.1\|3678175_3678475_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.7e-33	79.0
WP_002896201.1\|3678527_3679043_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.3e-81	85.4
WP_002896193.1\|3679052_3680225_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.9e-210	93.3
WP_002896191.1\|3680363_3681440_-\|tail	phage tail protein	Q37842	Escherichia_phage	1.2e-25	44.8
WP_002896188.1\|3681469_3681673_-	hypothetical protein	NA	NA	NA	NA
WP_002896186.1\|3681669_3682401_-	hypothetical protein	NA	NA	NA	NA
WP_004152882.1\|3682404_3685356_-	hypothetical protein	A0A2H4N7A3	Pectobacterium_phage	1.2e-06	50.9
WP_004150856.1\|3685357_3685957_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.3e-58	60.5
WP_002896182.1\|3685949_3686858_-\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	7.6e-106	66.9
WP_032441567.1\|3686844_3687207_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	4.9e-48	83.9
WP_002896177.1\|3687203_3687776_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	4.7e-77	72.3
WP_004150857.1\|3687870_3688563_+	hypothetical protein	NA	NA	NA	NA
WP_002896175.1\|3688559_3689006_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.2e-50	71.2
WP_002896172.1\|3688998_3689430_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	9.9e-64	82.5
WP_002896168.1\|3689525_3689954_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	9.6e-51	77.9
WP_002896163.1\|3689950_3690334_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.1e-17	42.0
WP_002896161.1\|3690338_3690848_-	lysozyme	E5G6N1	Salmonella_phage	2.1e-81	83.4
WP_002896158.1\|3690828_3691044_-	hypothetical protein	E5G6N0	Salmonella_phage	3.6e-30	90.1
WP_002896155.1\|3691047_3691251_-\|tail	tail protein X	A0A1S6KZY4	Salmonella_phage	1.3e-29	88.1
WP_002896151.1\|3691250_3691715_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	8.4e-77	89.0
WP_000059191.1\|3691810_3692461_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_002895972.1\|3692464_3693523_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.1e-180	93.1
WP_002895967.1\|3693539_3694373_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	6.3e-123	88.8
WP_004150858.1\|3694515_3696282_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.0
WP_002895959.1\|3696281_3697307_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	7.6e-171	86.7
WP_004199124.1\|3697368_3699111_-	AIPR family protein	NA	NA	NA	NA
WP_000700647.1\|3699386_3700064_-	hypothetical protein	NA	NA	NA	NA
WP_001316229.1\|3700178_3700484_-	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_001154434.1\|3700422_3700611_-	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_004150862.1\|3700764_3703179_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.5
WP_004150863.1\|3703175_3704033_-	DNA adenine methylase	E5G6L8	Salmonella_phage	2.0e-156	95.4
WP_000752622.1\|3704029_3704257_-	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	6.0e-36	98.7
WP_004150864.1\|3704256_3704490_-	DUF2732 family protein	E5G6L6	Salmonella_phage	4.1e-32	96.1
WP_000963473.1\|3704557_3704899_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	4.6e-56	99.1
WP_000956179.1\|3704862_3705063_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	1.6e-32	97.0
WP_000460893.1\|3705070_3705580_-	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
WP_000188448.1\|3705612_3705834_-	hypothetical protein	NA	NA	NA	NA
WP_004152885.1\|3705979_3706858_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.7e-30	39.9
WP_004150866.1\|3706869_3707814_+	hypothetical protein	NA	NA	NA	NA
WP_004152765.1\|3707912_3709397_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_009483812.1\|3709396_3709648_-	hypothetical protein	NA	NA	NA	NA
WP_004151720.1\|3709815_3710868_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	1.0e-106	57.0
3710943:3710961	attR	NA	NA	NA	NA

DBSCAN-SWA_11

4362652 : 4374305

Enterobacteria_phage(70.0%)

integrase

attL 4363102:4363116|attR 4386158:4386172

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004144574.1\|4362652_4363756_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	4.8e-62	40.5
4363102:4363116	attL	NA	NA	NA	NA
WP_002889940.1\|4363766_4365020_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	8.9e-89	44.9
WP_002889938.1\|4365372_4366563_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	6.4e-145	62.7
WP_004152029.1\|4366550_4367501_+	AAA family ATPase	A0A1X9IGI7	Lactococcus_phage	1.2e-13	27.1
WP_004152979.1\|4367500_4367926_+	hypothetical protein	NA	NA	NA	NA
WP_004152202.1\|4368493_4369060_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	9.7e-59	63.8
WP_004152203.1\|4369077_4369323_-	hypothetical protein	Q7M294	Enterobacteria_phage	5.5e-19	56.8
WP_062956184.1\|4369319_4370057_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.9e-70	59.4
WP_002889915.1\|4370598_4370865_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
WP_024940872.1\|4370861_4371419_+	ash family protein	Q7M2A7	Enterobacteria_phage	1.8e-33	70.4
WP_002889911.1\|4371415_4371643_+	hypothetical protein	NA	NA	NA	NA
WP_002889897.1\|4371639_4371960_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_002889890.1\|4371971_4374305_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	82.2
4386158:4386172	attR	NA	NA	NA	NA

DBSCAN-SWA_12

4843742 : 4853267

Enterobacteria_phage(83.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152207.1\|4843742_4846076_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	83.9
WP_004152206.1\|4846090_4846411_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_004152205.1\|4846407_4846635_-	hypothetical protein	NA	NA	NA	NA
WP_004153681.1\|4846631_4847180_-	ash family protein	Q7M2A7	Enterobacteria_phage	1.1e-30	69.4
WP_004152204.1\|4848003_4848741_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.1e-70	59.4
WP_004152203.1\|4848737_4848983_+	hypothetical protein	Q7M294	Enterobacteria_phage	5.5e-19	56.8
WP_004152202.1\|4849000_4849567_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	9.7e-59	63.8
WP_004152201.1\|4850307_4851387_+	hypothetical protein	NA	NA	NA	NA
WP_004152200.1\|4851387_4851924_+	hypothetical protein	NA	NA	NA	NA
WP_000019445.1\|4852286_4853267_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.0e-185	99.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP033955

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

15236 : 47711

Salmonella_phage(25.0%)

transposase,integrase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004213558.1\|15236_16166_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	5.6e-72	52.4
WP_004213560.1\|16310_17090_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	6.0e-51	89.4
WP_077250520.1\|17086_17899_-	hypothetical protein	NA	NA	NA	NA
WP_094818817.1\|18452_18842_-	hypothetical protein	NA	NA	NA	NA
WP_001261282.1\|18825_19056_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_001044770.1\|19052_19469_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_004206609.1\|19542_21105_+	AAA family ATPase	NA	NA	NA	NA
WP_000361404.1\|21089_22112_+	helicase UvrD	NA	NA	NA	NA
WP_000427619.1\|23645_24650_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_000405672.1\|24740_25175_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_004213585.1\|25260_27666_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.0e-141	46.1
WP_000118563.1\|27662_28739_+	signal peptidase II	NA	NA	NA	NA
WP_004213590.1\|28868_29426_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	2.6e-48	81.3
WP_004213592.1\|29428_32398_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.3
WP_000427619.1\|32476_33481_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_004213594.1\|33766_34261_+	hypothetical protein	NA	NA	NA	NA
WP_004213850.1\|34494_35418_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	1.7e-166	92.8
WP_048333570.1\|35484_35955_-	hypothetical protein	NA	NA	NA	NA
WP_048333569.1\|37498_37942_+	hypothetical protein	NA	NA	NA	NA
WP_040217257.1\|37962_38751_+	hypothetical protein	NA	NA	NA	NA
WP_108970992.1\|39201_40125_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	1.6e-164	92.2
WP_108970991.1\|40128_40371_+	hypothetical protein	NA	NA	NA	NA
WP_011251286.1\|40316_40736_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_011251285.1\|40732_41044_-	hypothetical protein	NA	NA	NA	NA
WP_004212794.1\|45030_45525_+	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	5.9e-20	38.6
WP_004212796.1\|45861_46260_+	H-NS histone family protein	NA	NA	NA	NA
WP_000427619.1\|46706_47711_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

133933 : 197358

Caulobacter_phage(15.0%)

transposase,protease,integrase

attL 139642:139657|attR 193336:193351

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004225018.1\|133933_134929_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	3.1e-20	28.7
WP_004210218.1\|135134_136148_-	NAD(P)-dependent alcohol dehydrogenase	M1PHA2	Moumouvirus	5.8e-06	26.0
WP_004210220.1\|136260_136788_+	cupin domain-containing protein	NA	NA	NA	NA
WP_077250518.1\|136801_139759_+\|transposase	Tn3 family transposase	A0A125RQ78	Bacillus_phage	2.3e-50	22.8
139642:139657	attL	NA	NA	NA	NA
WP_004144375.1\|140600_141461_+	alpha/beta hydrolase	A2RQC8	Archaeal_BJ1_virus	9.0e-08	21.7
WP_011251321.1\|143192_143828_+	HAD-IB family hydrolase	NA	NA	NA	NA
WP_011251320.1\|144164_145406_-	tellurium resistance protein TerF	A0A2D1GNA9	Pseudoalteromonas_phage	2.2e-10	27.2
WP_000301240.1\|145490_146066_-	tellurium resistance cAMP binding protein TerE	K4JRX3	Caulobacter_phage	9.6e-30	41.6
WP_004026609.1\|146152_146731_-	tellurium resistance membrane protein TerD	K4JRX3	Caulobacter_phage	1.9e-33	40.8
WP_004026607.1\|146769_147810_-	tellurium resistance membrane protein TerC	K7QKE8	Escherichia_phage	1.8e-71	46.5
WP_004026604.1\|147833_148289_-	tellurium resistance membrane protein TerB	NA	NA	NA	NA
WP_011251319.1\|148311_149463_-	tellurium resistance system protein TerA	NA	NA	NA	NA
WP_004196925.1\|149459_150044_-	tellurium resistance protein TerZ	K4JRX3	Caulobacter_phage	2.0e-11	29.4
WP_011251317.1\|150354_151413_+	hypothetical protein	NA	NA	NA	NA
WP_004181731.1\|151424_152567_+	hypothetical protein	A0A172Q0Y1	Acinetobacter_phage	3.7e-33	28.5
WP_004181732.1\|152559_153333_+	hypothetical protein	NA	NA	NA	NA
WP_004026596.1\|153334_154414_+\|protease	cysteine protease StiP family protein	A0A172Q0S8	Acinetobacter_phage	1.7e-40	34.1
WP_011251315.1\|154413_155370_+	HpcH/HpaI aldolase/citrate lyase family protein	NA	NA	NA	NA
WP_011251314.1\|155380_156604_+	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_004196888.1\|156606_157065_+	hypothetical protein	NA	NA	NA	NA
WP_011251313.1\|157544_158183_+	VWA domain-containing protein	NA	NA	NA	NA
WP_004026586.1\|158207_158849_+	TerD family protein	A0A2P1N0C0	Streptomyces_phage	2.4e-05	25.1
WP_004210266.1\|158849_159488_+	VWA domain-containing protein	NA	NA	NA	NA
WP_004026583.1\|159580_160621_+	VWA domain-containing protein	NA	NA	NA	NA
WP_011251311.1\|160620_162354_+	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA
WP_004196935.1\|162381_163881_+	kinase	NA	NA	NA	NA
WP_032720951.1\|164259_164742_+	hypothetical protein	NA	NA	NA	NA
WP_004118061.1\|165017_165422_-	DUF2251 domain-containing protein	NA	NA	NA	NA
WP_004118062.1\|165969_166248_-	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_004181742.1\|166341_166554_-	hypothetical protein	NA	NA	NA	NA
WP_011251308.1\|167020_167347_-	hypothetical protein	NA	NA	NA	NA
WP_011251307.1\|167584_169084_-	AMP-binding protein	A0A2H4PQU7	Staphylococcus_phage	1.8e-35	31.1
WP_004210292.1\|169064_170330_-	MSMEG_0569 family flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_011154627.1\|170347_170638_-	MSMEG_0570 family nitrogen starvation response protein	NA	NA	NA	NA
WP_004210297.1\|170649_171612_-	sll0787 family AIR synthase-like protein	NA	NA	NA	NA
WP_004210298.1\|171608_172172_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_004210300.1\|172182_173292_-	MSMEG_0568 family radical SAM protein	NA	NA	NA	NA
WP_004902273.1\|173251_174253_-	Nit6803 family nitriliase	NA	NA	NA	NA
WP_004210304.1\|174266_174749_-	MSMEG_0572 family nitrogen starvation response protein	NA	NA	NA	NA
WP_004210305.1\|175115_176516_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_004118067.1\|176891_177095_+	hypothetical protein	NA	NA	NA	NA
WP_004186895.1\|177124_177439_+	hypothetical protein	NA	NA	NA	NA
WP_004026565.1\|177681_178134_-	hypothetical protein	NA	NA	NA	NA
WP_029884537.1\|181406_182483_-	hypothetical protein	NA	NA	NA	NA
WP_004213836.1\|183625_183880_-	hypothetical protein	NA	NA	NA	NA
WP_004213833.1\|184057_185194_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_004213829.1\|185259_185577_-	hypothetical protein	NA	NA	NA	NA
WP_004197568.1\|185728_186052_-	hypothetical protein	NA	NA	NA	NA
WP_011251302.1\|186803_187763_-	DNA replication protein	NA	NA	NA	NA
WP_004186937.1\|187805_188213_-	hypothetical protein	NA	NA	NA	NA
WP_004213821.1\|188222_188666_-	hypothetical protein	NA	NA	NA	NA
WP_004213807.1\|189929_190898_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	7.3e-14	28.8
WP_004902302.1\|191225_192818_-\|transposase	IS66-like element ISKox1 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.2e-176	61.8
WP_004189161.1\|192848_193199_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	5.2e-39	63.8
WP_004215130.1\|193195_193636_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	4.4e-19	53.8
193336:193351	attR	NA	NA	NA	NA
WP_004902307.1\|193832_194015_+	DUF4113 domain-containing protein	A0A1W6JNT0	Morganella_phage	9.1e-11	57.1
WP_004117790.1\|195220_196192_-	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	7.0e-150	86.9
WP_004211841.1\|196191_197358_-	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	2.0e-223	97.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP033956

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1796 : 50618

Escherichia_phage(47.62%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000616807.1\|1796_2450_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000557619.1\|2542_2800_+	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA
WP_000439434.1\|2801_3134_+	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|4444_5149_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_013188475.1\|5659_6535_+	class A extended-spectrum beta-lactamase CTX-M-65	A0A1B0VBP7	Salmonella_phage	6.8e-152	98.9
WP_012579081.1\|6614_7538_+\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	2.2e-177	99.7
WP_001067855.1\|9288_9993_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001067855.1\|11103_11808_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000957857.1\|12485_12674_-	hypothetical protein	NA	NA	NA	NA
WP_064441864.1\|12765_13302_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	2.8e-84	100.0
WP_000027057.1\|13484_14345_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_012372818.1\|14514_15270_+	16S rRNA (guanine(1405)-N(7))-methyltransferase RmtB1	NA	NA	NA	NA
WP_001067855.1\|15719_16424_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_071557810.1\|16414_16555_+	hypothetical protein	NA	NA	NA	NA
WP_001333089.1\|18365_18647_+	hypothetical protein	NA	NA	NA	NA
WP_000361389.1\|18769_19120_-	protein stbB	NA	NA	NA	NA
WP_000959884.1\|19122_20085_-	plasmid segregation protein ParM	A0A222YXF2	Escherichia_phage	4.1e-94	53.9
WP_032146011.1\|20231_20525_+	hypothetical protein	NA	NA	NA	NA
WP_072109530.1\|20465_20645_-	hypothetical protein	NA	NA	NA	NA
WP_000085883.1\|20601_21285_+	DNA methylase	A0A2I7RE86	Vibrio_phage	5.6e-29	37.4
WP_001104881.1\|21285_21507_+	hypothetical protein	NA	NA	NA	NA
WP_000274503.1\|21520_21955_+	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_011161242.1\|22654_23227_+	YubH family protein	NA	NA	NA	NA
WP_001198928.1\|23199_23625_+	antirestriction protein	NA	NA	NA	NA
WP_000271762.1\|23671_24094_+	DUF1380 family protein	NA	NA	NA	NA
WP_001027493.1\|24090_24282_+	hypothetical protein	NA	NA	NA	NA
WP_012372796.1\|24595_26263_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.7e-164	53.3
WP_015059006.1\|27142_27400_-	hypothetical protein	NA	NA	NA	NA
WP_000218642.1\|27662_27893_+	hypothetical protein	NA	NA	NA	NA
WP_000170695.1\|27944_29306_+	DUF3560 domain-containing protein	NA	NA	NA	NA
WP_015059007.1\|29352_29916_+	class I SAM-dependent methyltransferase	A8HNV9	Thalassomonas_phage	6.1e-21	37.3
WP_021537720.1\|29915_30164_+	hypothetical protein	NA	NA	NA	NA
WP_072206670.1\|30067_30283_+	transporter	NA	NA	NA	NA
WP_012881134.1\|30457_30694_-	hypothetical protein	NA	NA	NA	NA
WP_000290834.1\|30758_31286_+	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	6.0e-47	74.4
WP_000006003.1\|31343_31577_+	DUF905 family protein	NA	NA	NA	NA
WP_000845953.1\|33729_34164_+	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
WP_001276217.1\|34160_34880_+	plasmid SOS inhibition protein A	NA	NA	NA	NA
WP_001312861.1\|35159_35318_+	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
WP_001309236.1\|35540_35759_+	hypothetical protein	NA	NA	NA	NA
WP_012881134.1\|35933_36170_-	hypothetical protein	NA	NA	NA	NA
WP_001272251.1\|36232_36529_+	hypothetical protein	NA	NA	NA	NA
WP_001234445.1\|36639_37461_+	DUF945 domain-containing protein	A0A2C9CYF8	Yersinia_phage	3.4e-44	38.2
WP_015059008.1\|37757_38405_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_000124981.1\|38681_39065_+	relaxosome protein TraM	NA	NA	NA	NA
WP_001067855.1\|39345_40050_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_002903955.1\|41683_42586_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_023148136.1\|42623_42857_-	hypothetical protein	NA	NA	NA	NA
WP_002210513.1\|42847_43609_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_002904004.1\|43629_44490_-	class A extended-spectrum beta-lactamase SHV-12	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_099093179.1\|44410_44650_-	hypothetical protein	NA	NA	NA	NA
WP_001138014.1\|44730_47697_-\|transposase	Tn3-like element TnAs1 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	100.0
WP_001161490.1\|47700_48261_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.1e-59	100.0
WP_013213990.1\|49803_50082_+	hypothetical protein	NA	NA	NA	NA
WP_013213989.1\|50192_50618_+	antirestriction protein	A0A2D0W8Z5	Bordetella_virus	5.3e-17	37.3

DBSCAN-SWA_2

93443 : 104602

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004118283.1\|93443_94310_+	replication initiation protein	A0A222YYK1	Escherichia_phage	1.5e-23	31.1
WP_011977818.1\|95419_96625_+	ParA family protein	A0A077SL49	Escherichia_phage	5.3e-163	69.3
WP_086523286.1\|96621_97599_+	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	1.4e-86	53.8
WP_013214011.1\|97680_98952_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	7.5e-152	63.7
WP_001568036.1\|98951_99383_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.1e-29	53.3
WP_009483812.1\|99541_99793_+	hypothetical protein	NA	NA	NA	NA
WP_004152765.1\|99792_101277_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_004152353.1\|101525_102497_+	mediator of plasmid stability	A0A222YXF2	Escherichia_phage	1.1e-73	46.8
WP_013214012.1\|102499_103171_+	mediator of plasmid stability	NA	NA	NA	NA
WP_001568040.1\|103233_103464_+	hypothetical protein	NA	NA	NA	NA
WP_001568041.1\|103900_104602_+	DNA methylase	A0A2I7RE86	Vibrio_phage	1.6e-26	36.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP033957

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP033954

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP033955

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP033956

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection