CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP022958	Azoarcus sp. DD4 chromosome, complete genome	3 crisprs	csa3,WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,Cas9_archaeal,DEDDh,DinG,PD-DExK	0	12	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP022958_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022958_1

465096-468555

TypeI

I-C

Consensus_repeat	Method
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	PILER-CR
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CRISPRCasFinder
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CRT

51 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP022958_1

>merge|NZ_CP022958|1|465096-468555|PILER-CR,CRISPRCasFinder,CRT
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACGTGTTTCCGGACGGGGCGCTTGTCATCATCGACGAAGGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACGACGCCGCTCGTGACGTCATTGAGCGCCACGCCGAAGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACCCGCCGGTCATCCAGCGCGAATCAGCCGGTGACCACGCGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACGTCGATGATGTTCGGCTCGCTGGTTTGCATGGTCGGGGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACAGGTCAAGGACTGGTACGCGGTCGCCGACTCCATGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACAAGCGTACAAGCTTGAATCCGACGACAAAGGCCAGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACAGCCTGCCGCACGCGCAGCGTGATGCAGCTCCACCCCGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACGACCACTGGGTGAAAGAGCAGCTGCGGGTGCGCCAGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACGCCATCAGTAGCCCCGCCCTGCGTGGTAGAGGCGCAGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACATCTTGGCTTGAGCGCGAGTTGCGGCCTGCTCGATCGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACTACCTGTGCCGGTTCAACGGCTCGGCATGGGACGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACGCCGGCAACGCCTACAGCTGGGTGTTCGACGACGGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACAGCTTCTGGTTGATCCACTTGTTCATCGACACTTCGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACATCGCCAAGGCTGGCGGGCTGTTCATCCTGCTGGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACTACGAATACGGGTTCGAACTCGGCGACGGCTGCGGCGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACAAGGCCATGTTCTGGCGTTCGCAGCAAGTCGGCATCGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACGTGTTCCACTGCCGTGAATCGCTCAGGTTCGTGTGTGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACACCAACAACGCCGCCGAAACGGCCGAAGGCGGCGCGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACATGCTGCCCCCTTATGCAATCGCGGTTCCGCCGGCCGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACTTAGAGCCGAGGTGCTGGGAAAGCACCCCTTCCTCGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACATGTACATGCGTCGCGCGGTGAAGTAATGGGCGCCGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACTGTTCCACCTTGGCATCCGCGAGGCAGGCATAGGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACGCCGCCGCTACCCGGTCGCCGTCGTGGCGCAGGTAGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACCTCGCGGGTCGGGCGCCACCAGGCGCCCTCGCGAGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACGCCGCCGCTACCCGGTCGCCGTCGTGGCGCAGGTAGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACCTCGCGGGTCGGGCGCCACCAGGCGCCCTCGCGAGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACTCCGCCAACCGCGACAGACCAGGCGCTTGGATTGGGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACCAAGGTGGCGTGATGGACTTCCGCCGGGTCTATGGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACTCTTTCAGGGCGAGCAAGAGCAGGACAAGGCGCTGGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACGTGGTGCTGGCGGCGCTCGCAGTCTTCAAGCGCGCAGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACGTTAGCAACGTGCTGACCGTGCGCATCAACGGGAGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACCGCAGCGGCATGACCGCCGCCGAGCTCGCCATGGCGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACCGGCATCAGGCGCGCGTGGTCGGCGTCGGGCTCGAGGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACACCCGCTACCTCGACTCCCCGGAACTGCTCGGCCGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACAATTTCACGCAGCCGCACCGCCGCCTGCGGATCGGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACATAGCGCCACCAGGTCGGCGATGCAGATGTGCGTGCCGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACGAGTTGTTGCCGGCGCTGTCGGCATGCACCAGATGGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACTTTCAGGCATCAGCCGTCTCCTGCTCCCGAGACGCGGGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACCAGCACGCGGATGGGCGCGTATTCCAGGTGGTTTTCGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACGTGAGGTAAACACTATGGCCAGTCATGCCGAACGCTGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACTCGACATGCCACTTGTAAGCAGCAATCGCCAAATGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACAGCAGCGCCTTGAACTTGGTCGCCCGCCACAGCTTGGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACTTCGCGTGTTCGAGCGCCTTGTCGAGGTTGGCTGCCGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACCGGCAACTGCGGTGACCACGTGAAAATACCGCCGATGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACGTGCCCTTGTGGCACGCCTTCAGAGTCCTGCCGTGGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACGCTCAGATTCCACCGCCGCGGCTTGGGGGCAGCGGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACACGTCCTGATCCTTGATGGCTTTGCGGGCAGTCTGGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACCAGGTCATGGGCTTCCACTGGCAGGGCCTCGGCTGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACCGCGAGGCCACGCTGTCGCAGATCAAGCCGCAGGTCGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACTGAGACTTCCCCCCGTGGGCGATATAGCCGCAGCCGGTCGCGCCCCTCGCGGGCGCGTGGGTTGAAACAGGTTACAAGTTCAGACGCTGCGATCACTTCGCGGGTCGCGCCCCTCGCGGGCGCGTGGGTCGGAAC

>NZ_CP022958|1|1|465096-468488|PILER-CR
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GTGTTTCCGGACGGGGCGCTTGTCATCATCGACGAAG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GACGCCGCTCGTGACGTCATTGAGCGCCACGCCGAA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CCGCCGGTCATCCAGCGCGAATCAGCCGGTGACCACGC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GTCGATGATGTTCGGCTCGCTGGTTTGCATGGTCGGG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	AGGTCAAGGACTGGTACGCGGTCGCCGACTCCAT
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	AAGCGTACAAGCTTGAATCCGACGACAAAGGCCA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	AGCCTGCCGCACGCGCAGCGTGATGCAGCTCCACCCC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GACCACTGGGTGAAAGAGCAGCTGCGGGTGCGCCA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GCCATCAGTAGCCCCGCCCTGCGTGGTAGAGGCGCA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	ATCTTGGCTTGAGCGCGAGTTGCGGCCTGCTCGATC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TACCTGTGCCGGTTCAACGGCTCGGCATGGGAC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GCCGGCAACGCCTACAGCTGGGTGTTCGACGACG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	AGCTTCTGGTTGATCCACTTGTTCATCGACACTTC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	ATCGCCAAGGCTGGCGGGCTGTTCATCCTGCTG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TACGAATACGGGTTCGAACTCGGCGACGGCTGCGGC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	AAGGCCATGTTCTGGCGTTCGCAGCAAGTCGGCATC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GTGTTCCACTGCCGTGAATCGCTCAGGTTCGTGTGT
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	ACCAACAACGCCGCCGAAACGGCCGAAGGCGGCGC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	ATGCTGCCCCCTTATGCAATCGCGGTTCCGCCGGCC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TTAGAGCCGAGGTGCTGGGAAAGCACCCCTTCCTC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	ATGTACATGCGTCGCGCGGTGAAGTAATGGGCGCC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TGTTCCACCTTGGCATCCGCGAGGCAGGCATAG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GCCGCCGCTACCCGGTCGCCGTCGTGGCGCAGGTA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CTCGCGGGTCGGGCGCCACCAGGCGCCCTCGCGA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GCCGCCGCTACCCGGTCGCCGTCGTGGCGCAGGTA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CTCGCGGGTCGGGCGCCACCAGGCGCCCTCGCGA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TCCGCCAACCGCGACAGACCAGGCGCTTGGATTGG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CAAGGTGGCGTGATGGACTTCCGCCGGGTCTATG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TCTTTCAGGGCGAGCAAGAGCAGGACAAGGCGCTG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GTGGTGCTGGCGGCGCTCGCAGTCTTCAAGCGCGCA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GTTAGCAACGTGCTGACCGTGCGCATCAACGGGA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CGCAGCGGCATGACCGCCGCCGAGCTCGCCATGGC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CGGCATCAGGCGCGCGTGGTCGGCGTCGGGCTCGAG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	ACCCGCTACCTCGACTCCCCGGAACTGCTCGGCC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	AATTTCACGCAGCCGCACCGCCGCCTGCGGATCG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	ATAGCGCCACCAGGTCGGCGATGCAGATGTGCGTGCC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GAGTTGTTGCCGGCGCTGTCGGCATGCACCAGATG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TTTCAGGCATCAGCCGTCTCCTGCTCCCGAGACGCGG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CAGCACGCGGATGGGCGCGTATTCCAGGTGGTTTTC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GTGAGGTAAACACTATGGCCAGTCATGCCGAACGCT
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TCGACATGCCACTTGTAAGCAGCAATCGCCAAAT
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	AGCAGCGCCTTGAACTTGGTCGCCCGCCACAGCTTG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TTCGCGTGTTCGAGCGCCTTGTCGAGGTTGGCTGCC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CGGCAACTGCGGTGACCACGTGAAAATACCGCCGAT
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GTGCCCTTGTGGCACGCCTTCAGAGTCCTGCCGTG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GCTCAGATTCCACCGCCGCGGCTTGGGGGCAGCG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	ACGTCCTGATCCTTGATGGCTTTGCGGGCAGTCTG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CAGGTCATGGGCTTCCACTGGCAGGGCCTCGGCT
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CGCGAGGCCACGCTGTCGCAGATCAAGCCGCAGGTC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TGAGACTTCCCCCCGTGGGCGATATAGCCGCAGCCG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC

>NZ_CP022958|1|1|465096-468555|CRISPRCasFinder
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GTGTTTCCGGACGGGGCGCTTGTCATCATCGACGAAG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GACGCCGCTCGTGACGTCATTGAGCGCCACGCCGAA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CCGCCGGTCATCCAGCGCGAATCAGCCGGTGACCACGC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GTCGATGATGTTCGGCTCGCTGGTTTGCATGGTCGGG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	AGGTCAAGGACTGGTACGCGGTCGCCGACTCCAT
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	AAGCGTACAAGCTTGAATCCGACGACAAAGGCCA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	AGCCTGCCGCACGCGCAGCGTGATGCAGCTCCACCCC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GACCACTGGGTGAAAGAGCAGCTGCGGGTGCGCCA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GCCATCAGTAGCCCCGCCCTGCGTGGTAGAGGCGCA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	ATCTTGGCTTGAGCGCGAGTTGCGGCCTGCTCGATC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TACCTGTGCCGGTTCAACGGCTCGGCATGGGAC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GCCGGCAACGCCTACAGCTGGGTGTTCGACGACG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	AGCTTCTGGTTGATCCACTTGTTCATCGACACTTC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	ATCGCCAAGGCTGGCGGGCTGTTCATCCTGCTG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TACGAATACGGGTTCGAACTCGGCGACGGCTGCGGC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	AAGGCCATGTTCTGGCGTTCGCAGCAAGTCGGCATC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GTGTTCCACTGCCGTGAATCGCTCAGGTTCGTGTGT
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	ACCAACAACGCCGCCGAAACGGCCGAAGGCGGCGC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	ATGCTGCCCCCTTATGCAATCGCGGTTCCGCCGGCC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TTAGAGCCGAGGTGCTGGGAAAGCACCCCTTCCTC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	ATGTACATGCGTCGCGCGGTGAAGTAATGGGCGCC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TGTTCCACCTTGGCATCCGCGAGGCAGGCATAG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GCCGCCGCTACCCGGTCGCCGTCGTGGCGCAGGTA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CTCGCGGGTCGGGCGCCACCAGGCGCCCTCGCGA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GCCGCCGCTACCCGGTCGCCGTCGTGGCGCAGGTA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CTCGCGGGTCGGGCGCCACCAGGCGCCCTCGCGA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TCCGCCAACCGCGACAGACCAGGCGCTTGGATTGG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CAAGGTGGCGTGATGGACTTCCGCCGGGTCTATG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TCTTTCAGGGCGAGCAAGAGCAGGACAAGGCGCTG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GTGGTGCTGGCGGCGCTCGCAGTCTTCAAGCGCGCA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GTTAGCAACGTGCTGACCGTGCGCATCAACGGGA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CGCAGCGGCATGACCGCCGCCGAGCTCGCCATGGC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CGGCATCAGGCGCGCGTGGTCGGCGTCGGGCTCGAG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	ACCCGCTACCTCGACTCCCCGGAACTGCTCGGCC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	AATTTCACGCAGCCGCACCGCCGCCTGCGGATCG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	ATAGCGCCACCAGGTCGGCGATGCAGATGTGCGTGCC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GAGTTGTTGCCGGCGCTGTCGGCATGCACCAGATG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TTTCAGGCATCAGCCGTCTCCTGCTCCCGAGACGCGG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CAGCACGCGGATGGGCGCGTATTCCAGGTGGTTTTC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GTGAGGTAAACACTATGGCCAGTCATGCCGAACGCT
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TCGACATGCCACTTGTAAGCAGCAATCGCCAAAT
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	AGCAGCGCCTTGAACTTGGTCGCCCGCCACAGCTTG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TTCGCGTGTTCGAGCGCCTTGTCGAGGTTGGCTGCC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CGGCAACTGCGGTGACCACGTGAAAATACCGCCGAT
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GTGCCCTTGTGGCACGCCTTCAGAGTCCTGCCGTG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GCTCAGATTCCACCGCCGCGGCTTGGGGGCAGCG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	ACGTCCTGATCCTTGATGGCTTTGCGGGCAGTCTG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CAGGTCATGGGCTTCCACTGGCAGGGCCTCGGCT
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CGCGAGGCCACGCTGTCGCAGATCAAGCCGCAGGTC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TGAGACTTCCCCCCGTGGGCGATATAGCCGCAGCCG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	AGGTTACAAGTTCAGACGCTGCGATCACTTCGCGG
GTCGCGCCCCTCGCGGGCGCGTGGGTCGGAAC

>NZ_CP022958|1|1|465096-468555|CRT
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GTGTTTCCGGACGGGGCGCTTGTCATCATCGACGAAG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GACGCCGCTCGTGACGTCATTGAGCGCCACGCCGAA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CCGCCGGTCATCCAGCGCGAATCAGCCGGTGACCACGC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GTCGATGATGTTCGGCTCGCTGGTTTGCATGGTCGGG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	AGGTCAAGGACTGGTACGCGGTCGCCGACTCCAT
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	AAGCGTACAAGCTTGAATCCGACGACAAAGGCCA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	AGCCTGCCGCACGCGCAGCGTGATGCAGCTCCACCCC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GACCACTGGGTGAAAGAGCAGCTGCGGGTGCGCCA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GCCATCAGTAGCCCCGCCCTGCGTGGTAGAGGCGCA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	ATCTTGGCTTGAGCGCGAGTTGCGGCCTGCTCGATC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TACCTGTGCCGGTTCAACGGCTCGGCATGGGAC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GCCGGCAACGCCTACAGCTGGGTGTTCGACGACG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	AGCTTCTGGTTGATCCACTTGTTCATCGACACTTC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	ATCGCCAAGGCTGGCGGGCTGTTCATCCTGCTG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TACGAATACGGGTTCGAACTCGGCGACGGCTGCGGC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	AAGGCCATGTTCTGGCGTTCGCAGCAAGTCGGCATC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GTGTTCCACTGCCGTGAATCGCTCAGGTTCGTGTGT
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	ACCAACAACGCCGCCGAAACGGCCGAAGGCGGCGC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	ATGCTGCCCCCTTATGCAATCGCGGTTCCGCCGGCC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TTAGAGCCGAGGTGCTGGGAAAGCACCCCTTCCTC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	ATGTACATGCGTCGCGCGGTGAAGTAATGGGCGCC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TGTTCCACCTTGGCATCCGCGAGGCAGGCATAG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GCCGCCGCTACCCGGTCGCCGTCGTGGCGCAGGTA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CTCGCGGGTCGGGCGCCACCAGGCGCCCTCGCGA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GCCGCCGCTACCCGGTCGCCGTCGTGGCGCAGGTA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CTCGCGGGTCGGGCGCCACCAGGCGCCCTCGCGA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TCCGCCAACCGCGACAGACCAGGCGCTTGGATTGG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CAAGGTGGCGTGATGGACTTCCGCCGGGTCTATG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TCTTTCAGGGCGAGCAAGAGCAGGACAAGGCGCTG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GTGGTGCTGGCGGCGCTCGCAGTCTTCAAGCGCGCA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GTTAGCAACGTGCTGACCGTGCGCATCAACGGGA
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CGCAGCGGCATGACCGCCGCCGAGCTCGCCATGGC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CGGCATCAGGCGCGCGTGGTCGGCGTCGGGCTCGAG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	ACCCGCTACCTCGACTCCCCGGAACTGCTCGGCC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	AATTTCACGCAGCCGCACCGCCGCCTGCGGATCG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	ATAGCGCCACCAGGTCGGCGATGCAGATGTGCGTGCC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GAGTTGTTGCCGGCGCTGTCGGCATGCACCAGATG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TTTCAGGCATCAGCCGTCTCCTGCTCCCGAGACGCGG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CAGCACGCGGATGGGCGCGTATTCCAGGTGGTTTTC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GTGAGGTAAACACTATGGCCAGTCATGCCGAACGCT
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TCGACATGCCACTTGTAAGCAGCAATCGCCAAAT
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	AGCAGCGCCTTGAACTTGGTCGCCCGCCACAGCTTG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TTCGCGTGTTCGAGCGCCTTGTCGAGGTTGGCTGCC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CGGCAACTGCGGTGACCACGTGAAAATACCGCCGAT
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GTGCCCTTGTGGCACGCCTTCAGAGTCCTGCCGTG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	GCTCAGATTCCACCGCCGCGGCTTGGGGGCAGCG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	ACGTCCTGATCCTTGATGGCTTTGCGGGCAGTCTG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CAGGTCATGGGCTTCCACTGGCAGGGCCTCGGCT
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	CGCGAGGCCACGCTGTCGCAGATCAAGCCGCAGGTC
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	TGAGACTTCCCCCCGTGGGCGATATAGCCGCAGCCG
GTCGCGCCCCTCGCGGGCGCGTGGGTTGAAAC	AGGTTACAAGTTCAGACGCTGCGATCACTTCGCGG
GTCGCGCCCCTCGCGGGCGCGTGGGTCGGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022958.1\|WP_141016539.1\|459543_460218_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NZ_CP022958.1\|WP_141016549.1\|471368_472454_-\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|377417
NZ_CP022958.1\|WP_141016544.1\|464621_464912_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP022958.1\|WP_141016541.1\|462037_462919_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|274216
NZ_CP022958.1\|WP_141016546.1\|469666_470278_-\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|182405
NZ_CP022958.1\|WP_141016543.1\|463571_464612_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP022958.1\|WP_141020536.1\|475217_475691_+\|SnoaL-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238357
NZ_CP022958.1\|WP_141016545.1\|468677_469667_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|237420
NZ_CP022958.1\|WP_141016540.1\|460214_462038_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP022958.1\|WP_141016548.1\|471024_471345_-\|(2Fe-2S)-ferredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|225945
NZ_CP022958.1\|WP_141016536.1\|455609_455813_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022958.1\|WP_141016551.1\|473937_475203_+\|Rieske-2Fe-2S-domain-containing-protein	unknown	unknown	gnl\|CDD\|176889
NZ_CP022958.1\|WP_141016550.1\|472706_473690_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|373110
NZ_CP022958.1\|WP_141016553.1\|476205_477369_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380582
NZ_CP022958.1\|WP_168224887.1\|456490_456643_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022958.1\|WP_141016552.1\|475701_476025_+\|Rieske-2Fe-2S-domain-containing-protein	unknown	unknown	gnl\|CDD\|239604
NZ_CP022958.1\|WP_141016542.1\|462938_463568_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_CP022958.1\|WP_141016538.1\|456801_459075_+\|CRISPR-associated-endonuclease-Cas3''	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP022958.1\|WP_141016547.1\|470345_471017_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225496
NZ_CP022958.1\|WP_141016537.1\|455883_456216_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP022958.1\|WP_141016539.1\|459543_460218_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	5.90239e-124
NZ_CP022958.1\|WP_141016549.1\|471368_472454_-\|VanZ-family-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	9.54545e-08
NZ_CP022958.1\|WP_141016544.1\|464621_464912_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.44322e-35
NZ_CP022958.1\|WP_141016541.1\|462037_462919_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|274216	TIGR02589, conserved_hypothetical_protein, CRISPR-associated protein Cas7/Csd2, subtype I-C/DVULG. This model represents one of two closely related CRISPR-associated proteins that belong to the larger family of TIGR01595. Members are the Csd2 protein of the Dvulg subtype of CRISPR/cas system. CRISPR stands for Clustered Regularly Interspaced Short Palindromic Repeats. The related model is TIGR02590, the Csh2 protein of the Hmari CRISPR subtype.	3.33183e-161
NZ_CP022958.1\|WP_141016546.1\|469666_470278_-\|glutathione-S-transferase	gnl\|CDD\|182405	PRK10357, PRK10357, putative glutathione S-transferase; Provisional.	1.64149e-79
NZ_CP022958.1\|WP_141016543.1\|463571_464612_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP022958.1\|WP_141020536.1\|475217_475691_+\|SnoaL-like-domain-containing-protein	gnl\|CDD\|238357	cd00667, ring_hydroxylating_dioxygenases_beta, Ring hydroxylating dioxygenase beta subunit. This subunit has a similar structure to NTF-2, Ketosteroid isomerase and scytalone dehydratase.The degradation of aromatic compounds by aerobic bacteria frequently begins with the dihydroxylation of the substrate by nonheme iron-containing dioxygenases. These enzymes consist of two or three soluble proteins that interact to form an electron-transport chain that transfers electrons from reduced nucleotides (NADH) via flavin and [2Fe-2S] redox centers to a terminal dioxygenase. Aromatic-ring-hydroxylating dioxygenases oxidize aromatic hydrocarbons and related compounds to cis-arene diols. These enzymes utilize a mononuclear non-heme iron center to catalyze the addition of dioxygen to their respective substrates. The active site of these enzymes however is in the alpha sub-unit. No functional role has been attributed to the beta sub-unit except for a structural role.	2.4417e-44
NZ_CP022958.1\|WP_141016540.1\|460214_462038_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NZ_CP022958.1\|WP_141016545.1\|468677_469667_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|237420	PRK13537, PRK13537, nodulation factor ABC transporter ATP-binding protein NodI.	2.73918e-153
NZ_CP022958.1\|WP_141016548.1\|471024_471345_-\|(2Fe-2S)-ferredoxin-domain-containing-protein	gnl\|CDD\|225945	COG3411, COG3411, Ferredoxin [Energy production and conversion].	2.14126e-23
NZ_CP022958.1\|WP_141016553.1\|476205_477369_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380582	cd06359, PBP1_Nba-like, type 1 periplasmic binding component of active transport systems predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type 1 periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.	1.07645e-168
NZ_CP022958.1\|WP_141016551.1\|473937_475203_+\|Rieske-2Fe-2S-domain-containing-protein	gnl\|CDD\|176889	cd08880, RHO_alpha_C_ahdA1c-like, C-terminal catalytic domain of the large/alpha subunit (ahdA1c) of a ring-hydroxylating dioxygenase from Sphingomonas sp. strain P2 and related proteins. C-terminal catalytic domain of the large subunit (ahdA1c) of the AhdA3A4A2cA1c salicylate 1-hydroxylase complex from Sphingomonas sp. strain P2, and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). AhdA3A4A2cA1c is one of three known isofunctional salicylate 1-hydroxylase complexes in strain P2, involved in phenanthrene degradation, which catalyze the monooxygenation of salicylate, the metabolite of phenanthene degradation, to produce catechol. This complex prefers salicylate over other substituted salicylates; the other two salicylate 1-hydroxylases have different substrate preferences. RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-terminal domain which binds the non-heme Fe(II). The Fe(II) is co-ordinated by conserved His and Asp residues. Other oxygenases belonging to this subgroup include the alpha subunits of anthranilate 1,2-dioxygenase from Burkholderia cepacia DBO1, a polycyclic aromatic hydrocarbon dioxygenase from Cycloclasticus sp. strain A5 (PhnA dioxygenase), salicylate-5-hydroxylase from Ralstonia sp. U2, ortho-halobenzoate 1,2-dioxygenase from Pseudomonas aeruginosa strain JB2, and the terephthalate 1,2-dioxygenase system from Delftia tsuruhatensis strain T7. This subfamily belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket.	4.35544e-121
NZ_CP022958.1\|WP_141016552.1\|475701_476025_+\|Rieske-2Fe-2S-domain-containing-protein	gnl\|CDD\|239604	cd03528, Rieske_RO_ferredoxin, Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the insertions that give other Rieske proteins unique structural features are missing. CARDO catalyzes dihydroxylation at the C1 and C9a positions of carbazole. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.	2.05997e-36
NZ_CP022958.1\|WP_141016542.1\|462938_463568_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	2.6333e-40
NZ_CP022958.1\|WP_141016538.1\|456801_459075_+\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	3.4104e-57
NZ_CP022958.1\|WP_141016550.1\|472706_473690_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|373110	pfam14525, AraC_binding_2, AraC-binding-like domain. This domain is related to the AraC ligand binding domain pfam02311.	9.4247e-29
NZ_CP022958.1\|WP_141016547.1\|470345_471017_-\|alpha/beta-hydrolase	gnl\|CDD\|225496	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	1.59654e-63

>NZ_CP022958.1|WP_141016544.1|464621_464912_+|CRISPR-associated-endonuclease-Cas2
MMVLVSYDVSTRESAGERRLRRVAKACRDYGQRVQFSVFEIEVDPAQWTVLKHRLMGLIDPAQDSLRFYYLGKNWKTKVEHIGAKAALDLNGPLVF
>NZ_CP022958.1|WP_141016543.1|463571_464612_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRRQLNTLYVTTEGAWLKKDGANIVMEVEGAERARLPVHMLESMVCMGRVMVSPPLLGYCAEQGICVSFLSPNGKFLARMEGPVSGNVLLRREQYRRTDDPARCGLVVRNLLIGKVHNQRAVLGRALRDHGEGMPEADQTALAHARERLRRISARLLLEEKLDVLRGLEGEAAQAYFGVFDHLIRVPEPALRFKGRSRRPPLDAVNALLSFLYTLLTHDCRSALESVGLDPAVGFLHRDRPGRPSLALDLLEEFRPVMADRLALSLINRRQLGERDFVQLDNGAVSLKEESRKTVLTAYQERKREEMRHAFLEEKFAVGLFPAVQAQLFARHLRGDLEAYPPFLWK
>NZ_CP022958.1|WP_141016542.1|462938_463568_+|CRISPR-associated-protein-Cas4
MEDNLIPLSALQHYLYCPRQCALIHLEQQWAENRQTVEGRLLHDKADKPAIERRHGVRTVTAMPLSSVELGISGVADVVEFHVEAASERPYPVEYKRGRPKAHRADEVQLCAQALCLEAMFGVPVEEGALFYGQPRRREVVVFDEALRTLTQETIAATRAMFLSGGTPLASYDAKRCDNCSLLDLCQPRLLAKAGGVEVWLKRQLQNED
>NZ_CP022958.1|WP_141016541.1|462037_462919_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTAIAHRYEFVYLFDVTNGNPNGDPDAGNLPRLDPETNCGLVTDVALKRKIRNFVTLDKDGSTGYAIYMQEKAVLNNQHKRAYDALEIKPEDKKLPKDEAKAREITAWMCANFFDVRTFGAVMTTGVNAGQVRGPVQLAFATSVEPVLPLEISITRMAVTTEKEAEAQSGDNRTMGRKHILPYGLYRAHGFVSAKLAERTGFSDDDLQLLWRALINMFEHDRSAARGEMAARKLIVFEHDNAMGNAPAHVLFDTVKVTRAKQEDDGPARSFADYRVKVDAEMLPQGVSVREYL
>NZ_CP022958.1|WP_141016540.1|460214_462038_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILQALVRYYQRLMARGAGGIAGYGYSPEKISYEIVLAPNGAVLAVNDIRDTTGKKPQPRVLDVPQPEKRTVGIKSNFLWDKTSYVLGVSATSKRADKEHEAFKALHETALAGVQDEGLQALLAFLQRWSPEQFQAPLFPEEMRDANLVFRLGNEHRHMHEREAANALRARLLGDEEAGEGTPPAAGAICLVSGEVAPIARLHPAIKGVNGAQSSGASLVSFNLDAFTSYGKNQGDNAPVSEQAAFAYTSVLNHLLRRGPDNRQRLQVGDTSVVFWAEAAGSEADAQAAENFLSSLLLPPDDESEANRLRTVLDGLGKGRPLAELDPGLAPGTRMYVLGLAPNASRLSVRYWQVDTLEVFARRLAEHAQDLRIEPLPWRIEPTVYRLLLATVPNREGAMPKADDAFDNLIGETMRAILSGGLYPRSLLANTVLRIRSDGNLSGMRAAICKGVLTRERRLGIRTSDEEIPVSLDKQSTQPGYLLGRLFAVLEFVQRCALGGQVNATIRDRYYGAASATPAAIFPVLLRNTQNHMGKLRKERPGQAVNLEKEIRDIVEGLPDQFPRSLKIEDQGRFAIGYYHQSHTHFAKRDASGDAAENTETETEGAL
>NZ_CP022958.1|WP_141016539.1|459543_460218_+|type-I-C-CRISPR-associated-protein-Cas5
MSFGVRLEIWGERACFTRPEMKVERVSYDVITPSAARGILEAIHWKPAIRWHIDRIHVLNPIRFESIRRNEVGGKLSPASVAKAMKAGSTAGLATYVDEDRQQRAATVLRDVHYLIEAHFQLTGRAGPDDSVGKHLDIFNRRARKGQCFHAPCLGVREFPASFELLEEGALPPEPAAGVELDKDLGWMLHDIDFADGMTPHFFRACMKKGVIEVPPWQAVEVKA
>NZ_CP022958.1|WP_141016538.1|456801_459075_+|CRISPR-associated-endonuclease-Cas3''
MEELTLAISRFFAHSTALADRSDWQPLAHHLQNVAAMAARFASIFNAAGLAAPAGLLHDIGKYTEDFQRRIAGEAVRVDHATRGAMLALQQYPDLGYLIAYAIAGHHAGLANGIESGERTSLKERLRGVGLPPLLPVWQEEIQLPANLGELPFKKAGSGGPMFQAAFLVRMLFSCLVDADYLDTEAFYDGVAQPGEPNDRNVLRALEAPRLEALRERLDAYLATFTADSEVNRIRVDILAHVRGEAVRDPGLFSLTVPTGGGKTLASLAFALDHAIRHGLQRVIFVIPFTSIVEQNAAVFRRALGDLGESAVLEHHSAFVQPPPTRDDAERYQSQEKLKLAMENWDAPIVVTTAVQFFESLFAARPSQCRKLHNIAGSVVVLDEAQTLPLKLLRPAVAAIDELARNYRSSVVLCTATQPALKAPEFVGGFESVRELAPEPPQLFRKLERVRVRHVGELDDEALAAHMRAHEQVLCIVNNRRHARAVFQGMADLPGARHLTTLMCASHRSKVLAEARDDLKSGRPCRLVSTSLIEAGVDVDFPLVLRAEAGLDSIAQAAGRCNREGRRDAAASEVLVFSTANPDWAPPPELKQFAQAAATVLRSHAADPLCPAAIEAYFRELYWRKGESALDGGGLLGLLRSSRLDSLPLETLATRFRMIDSVQMPVIVPYDDTARDALKALRYVEKSGGIARSLQSYLVQLPRQGFEALRKSGAIQPVAPERWGEQFMALTVMDIYSKDFGLSWDDPAFLKAESLCW
>NZ_CP022958.1|WP_168224887.1|456490_456643_+|hypothetical-protein
MLKLIELLFFLFALLAIGSIVHAAFGPLGLVLSIVAVVLLAIYGPMPPKR
>NZ_CP022958.1|WP_141016537.1|455883_456216_+|hypothetical-protein
MNLALAVKIVERVAGITGHSPHLECWSLDWCSEGNHSLAVLARRRAGLRGGFELSYAEPESEAEWHYWFYLSDPNAPAIQLPGVVRLQLSEAVLDLLDVYGRPLQLKTLR
>NZ_CP022958.1|WP_141016536.1|455609_455813_+|hypothetical-protein
MSDSIKLLQLYPVPVMHWRFFAQQVGVDEGVVRGLCEKGHLPVIHFGRHRFINLARLTADCMVEVAD
>NZ_CP022958.1|WP_141016545.1|468677_469667_-|ATP-binding-cassette-domain-containing-protein
MTAALPAANAVRPPGERPSPLMIRGLVKRYGDTEVVRGIDLELRAGECFTLLGPNGAGKTTTLRCALGLATPTAGDIRLCGEPVPERAREARMRVGIVPQIDNLDPDFTCAENLLVYGRYFGMKDADIRARIPELLAFAGLETKMDARIQSLSGGMKRRLTLARALVNRPELLVLDEPTTGLDPQARHLIWDRLKQLIRNGTTVLLTTHFMDEAERLSDQLAILDTGRMLAGGSPREVIATHIEPQVVEVFGEWGNGGNGSAGAPTWAAQHAAALSDRFEISGETAFCYVRDPAPLLAHLAAQPGLRYLHRPANLEDVFLKLTGRELRD
>NZ_CP022958.1|WP_141016546.1|469666_470278_-|glutathione-S-transferase
MKLLASLTSPYARKIRILLAEKNIPFELVVDSPWETATRVPEVNPLGKVPALVLDSGEVFFDSPVIAGYIETLGVGPAMLPAGGIERVRVRQSEALADGILDAAVTAYLEGRRPEAQQSPLNLDRQYDKIQRSLAELEKRLADRQWLDGDTLQLGDITVGVALGYLDLRLGYLDWRSGHPVLSAFAERLFARPSFAATVPPAG
>NZ_CP022958.1|WP_141016547.1|470345_471017_-|alpha/beta-hydrolase
MSSRPIATESALLRGGAGAIEVLIDAPEQVRGIALVCHPHPLFGGANTNKVAHTLARTFRDLGYAAVRPNFRGVGKSEGEHDHGQGETEDMLSVIAWMQSRWGGLPLVLGGFSFGGFVQTRVANRLADGIAPPRQIVLVGMAAGTAADGARHYETPELAKNVPALIIHGESDDTVPLDNVFDWARPQELPVIVVPGADHFFHGRLHLIRDLMLRNVAPASQAA
>NZ_CP022958.1|WP_141016548.1|471024_471345_-|(2Fe-2S)-ferredoxin-domain-containing-protein
MSYFKHHVFFCCNQRPAGESCCNDHGASAMQVYAKERTAALGLKGKGSVRINKAGCLGRCDDGPVLVVYPDNVWYTYVDKDDIDEIIDQHLAHGRIVERLRLPDSV
>NZ_CP022958.1|WP_141016549.1|471368_472454_-|VanZ-family-protein
MPPRPASSLPRNLALAYGVLIVYACLHPFAGWKATGLQLFDFMVAPWPKYFLAIDLVFNVLGYFPLGFVLVAALPRAWPRWRSVATAALLAAALSFGLETAQNFLPTRVSSNVDLGANALGGLLGALAGAWWAHPLFDHRGGLHRWRNERIVGGHTGDAGLILLGLWLLAQLTPDGLLFGSGDVRSLLGLPAPLPFNPDRFIGFETVLIATSVVALGLLARCMMQTPSPWPVVLLFALGLGAKSLATATFFVPGEPLAWLTPGAARGLAAGGVVLATALLLPRVLQHALAGSALLAATALINLMPENPYLYLGRRLINQGNFLNFHGLTQLVASLWPFAALAYLSALGLWRGEHLAGERRL
>NZ_CP022958.1|WP_141016550.1|472706_473690_-|helix-turn-helix-domain-containing-protein
MATIAHGPEPIALRQHRYFESYDVDDTRERIAEVLQPHRLEPTRSARRIRSHMDFVRFGGTVIGALDFGDEMDVVVDEMDDYYLFVCSLRGHAEVRSMGERTTIGRDRGAVCIPGAEFAGRFSPDCEQFFMRVDRSAFAAHTGVDLMRFDAGLNLASPALAPWLAQFRLLASQPELMALAQRDERVAVELERLLLTLLLSGQPHRPAEAAPAAGIAPAVVRRAEAWIETHACEPIRLGDIAAAVDVPVRTLLDGFQRFRAASPMQLVRQYRLEHAHRRLLQAGDDARIADIALDCGFAHLGRFSQTYRQHYGESPSDTLRRRSACPR
>NZ_CP022958.1|WP_141016551.1|473937_475203_+|Rieske-2Fe-2S-domain-containing-protein
MNAPLAAAPAAPTDKLVYFPREDGSRVPYAVFSSQEIYDLEQERIYRGPTWNFLGLECEIPKPGDYKSTFVGDTPVVVTRTEDGELAAWVNRCSHRGAMVCRNARGNASSHSCVYHQWSFDARGNLLGVPFRRGQKHMSGMPKDFDPKCHSLRQLKVESYRGLLFATFSDAAPALPDYLGAEMRPWIDRIFHKPIEFLGCTRQYSQSNWKLYFENVKDPYHASMLHLFHTTFNIFRVGMAARSIPDATHGLHSIITVTKNEEETADAYKQQNIRSMDEGFRLEDESVLGHVKEYDELTTNHIQPIFPQLVIQQIHNTLVARQLLPKGPGNFELIFHFFGYTDDTPELRELRLKQANLVGPAGYISMEDTEATELVQKGTRRDPDACSVIEMARDNPGQQDTVITESLIRRFWAGYQQLMGL
>NZ_CP022958.1|WP_141020536.1|475217_475691_+|SnoaL-like-domain-containing-protein
MERMALWFELHSLQERYVSVLDNDRLEEWPGLFTEDCEYAIIPRENADMGLPVGIMWCNNQRMLRDRVVSLRNANIFEAHSYRHMTSGLEISPVDADTVELKANYVVVQTRANGESQVYQAGRYEDRVVRTAEGWRYQKKRVIYDTSRVQTLLATPI
>NZ_CP022958.1|WP_141016552.1|475701_476025_+|Rieske-2Fe-2S-domain-containing-protein
MSDTSVIEWHDVGVPEDFPDNGSWPVVAGGVEVAVFRLGDELFGLRDLCSHGAAKLSDGYVENDCVECPLHQGLFDIRTGQHQCAPLTEPVKAFPVRVVAGRVQVAV
>NZ_CP022958.1|WP_141016553.1|476205_477369_+|ABC-transporter-substrate-binding-protein
MFQPKHAALTLALCTAFAAHAADPIKVGIALDISGPFAAAGAEAKDGFELAIEKLGGKLGGQPAEFIKTDFAGNPEQATQLVTRYLQRDKIDFFTGPIASNSALAVGPALFAAKVPFISSNPGPSQYAGKQCNPYFFGQYQNDTYDEAAGKLANEKGYKNMVIIAPNYPAGKDHLNGFKRLYKGSLKDEIYTKVGQIDYAAEIAQIRAAKPDAVFFFLPGAMGINFIKQYIGGGLKDIPLVAPGFSADQDVIQAVGEPMLGLYNTAHWTHDLPLPANTEFVSAFRKKYDGRYPTVYAAMAYDAILAMDAAVRDTGGKVEDRAAVVKALAKPSFKSVRGEFSYGPNHYPVQNYYLRVVEKDAAGKLTNKLVGTVMEKHQDAYVGECAQ

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Crispr_ID: NZ_CP022958_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022958_2

1072823-1072919

Orphan

Consensus_repeat	Method
CCGCCATCGGCGCGGTGGCCGGTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022958_2

>merge|NZ_CP022958|2|1072823-1072919|CRISPRCasFinder
CCGCCATCGGCGCGGTGGCCGGTGCCGTGCTCGGTGCGGCGACCTCGGGCAAGGGCAACCGCGGCGAAGCCACCGCCATCGGCGCGGCGGCCGGTGC

>NZ_CP022958|2|2|1072823-1072919|CRISPRCasFinder
CCGCCATCGGCGCGGTGGCCGGTGC	CGTGCTCGGTGCGGCGACCTCGGGCAAGGGCAACCGCGGCGAAGCCA
CCGCCATCGGCGCGGCGGCCGGTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022958.1\|WP_141017046.1\|1082837_1084241_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|224089
NZ_CP022958.1\|WP_141017050.1\|1086815_1089995_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP022958.1\|WP_141017034.1\|1065774_1066983_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|182528
NZ_CP022958.1\|WP_141017048.1\|1085023_1085728_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP022958.1\|WP_141020580.1\|1063077_1063779_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_CP022958.1\|WP_141017036.1\|1067707_1068853_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP022958.1\|WP_141017037.1\|1068979_1070713_-\|glutamine--tRNA-ligase/YqeY-domain-fusion-protein	unknown	unknown	gnl\|CDD\|235424
NZ_CP022958.1\|WP_141017032.1\|1063888_1064125_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368727
NZ_CP022958.1\|WP_141020581.1\|1064302_1064518_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022958.1\|WP_141017039.1\|1072210_1072594_+\|fluoride-efflux-transporter-CrcB	unknown	unknown	gnl\|CDD\|184564
NZ_CP022958.1\|WP_141017033.1\|1064560_1065760_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|182528
NZ_CP022958.1\|WP_141017038.1\|1070880_1072155_+\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|223740
NZ_CP022958.1\|WP_141017043.1\|1078165_1080082_-\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|236451
NZ_CP022958.1\|WP_141017044.1\|1080161_1081028_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|180561
NZ_CP022958.1\|WP_141017041.1\|1073451_1076748_-\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|223627
NZ_CP022958.1\|WP_141017035.1\|1066979_1067693_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP022958.1\|WP_141017049.1\|1085724_1086819_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP022958.1\|WP_141017045.1\|1081250_1082810_+\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|239398
NZ_CP022958.1\|WP_141017047.1\|1084408_1084933_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP022958.1\|WP_141017042.1\|1076976_1078077_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225891

Protein	Function_ID	Function_description	E-value
NZ_CP022958.1\|WP_141017046.1\|1082837_1084241_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	6.75044e-128
NZ_CP022958.1\|WP_141017050.1\|1086815_1089995_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP022958.1\|WP_141017048.1\|1085023_1085728_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	4.25985e-20
NZ_CP022958.1\|WP_141020580.1\|1063077_1063779_+\|pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	4.66807e-77
NZ_CP022958.1\|WP_141017034.1\|1065774_1066983_-\|FtsX-like-permease-family-protein	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	3.86432e-49
NZ_CP022958.1\|WP_141017037.1\|1068979_1070713_-\|glutamine--tRNA-ligase/YqeY-domain-fusion-protein	gnl\|CDD\|235424	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional.	0
NZ_CP022958.1\|WP_141017032.1\|1063888_1064125_-\|hypothetical-protein	gnl\|CDD\|368727	pfam06060, Mesothelin, Pre-pro-megakaryocyte potentiating factor precursor (Mesothelin). This family consists of several mammalian pre-pro-megakaryocyte potentiating factor precursor (MPF) or mesothelin proteins. Mesothelin is a glycosylphosphatidylinositol-linked glycoprotein highly expressed in mesothelial cells, mesotheliomas, and ovarian cancer, but the biological function of the protein is not known.	1.52562e-05
NZ_CP022958.1\|WP_141017036.1\|1067707_1068853_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	6.60761e-44
NZ_CP022958.1\|WP_141017039.1\|1072210_1072594_+\|fluoride-efflux-transporter-CrcB	gnl\|CDD\|184564	PRK14196, PRK14196, fluoride efflux transporter CrcB.	2.91219e-45
NZ_CP022958.1\|WP_141017033.1\|1064560_1065760_-\|FtsX-like-permease-family-protein	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	7.47792e-53
NZ_CP022958.1\|WP_141017038.1\|1070880_1072155_+\|mechanosensitive-ion-channel	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	3.4355e-26
NZ_CP022958.1\|WP_141017043.1\|1078165_1080082_-\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|236451	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional.	0
NZ_CP022958.1\|WP_141017044.1\|1080161_1081028_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|180561	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed.	1.15541e-122
NZ_CP022958.1\|WP_141017041.1\|1073451_1076748_-\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|223627	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].	6.31883e-116
NZ_CP022958.1\|WP_141017035.1\|1066979_1067693_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.00493e-106
NZ_CP022958.1\|WP_141017049.1\|1085724_1086819_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.3481e-59
NZ_CP022958.1\|WP_141017045.1\|1081250_1082810_+\|carbonic-anhydrase	gnl\|CDD\|239398	cd03124, alpha_CA_prokaryotic_like, Carbonic anhydrase alpha, prokaryotic-like subfamily. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This sub-family includes bacterial carbonic anhydrase alpha, as well as plant enzymes such as tobacco nectarin III and yam dioscorin and, carbonic anhydrases from molluscs, such as nacrein, which are part of the organic matrix layer in shells. Other members of this family may be involved in maintaining pH balance, in facilitating transport of carbon dioxide or carbonic acid, or in sensing carbon dioxide levels in the environment. Dioscorin is the major storage protein of yam tubers and may play a role as an antioxidant. Tobacco Nectarin may play a role in the maintenace of pH and oxidative balance in nectar. Mollusc nacrein may participate in calcium carbonate crystal formation of the nacreous layer. This subfamily also includes three alpha carbonic anhydrases from Chlamydomonas reinhardtii (CAH 1-3). CAHs1-2 are localized in the periplasmic space. CAH1 faciliates the movement of carbon dioxide across the plasma membrane when the medium is alkaline. CAH3 is localized to the thylakoid lumen and provides CO2 to Rubisco.	9.56824e-81
NZ_CP022958.1\|WP_141017042.1\|1076976_1078077_+\|hypothetical-protein	gnl\|CDD\|225891	COG3355, COG3355, Predicted transcriptional regulator [Transcription].	7.77866e-05

>NZ_CP022958.1|WP_141017039.1|1072210_1072594_+|fluoride-efflux-transporter-CrcB
MHASAFLAVGGGAAVGAWLRWGLGVWLNPLFAAMPLGTLAANLIGGFLMGLALAVIQAWPALSPALKLLLTTGLLGGLTTFSTWSAEAFHFVQRGAWGWLTLHLLAHVAGSVLMTWAGYSLFNAMRG
>NZ_CP022958.1|WP_141017038.1|1070880_1072155_+|mechanosensitive-ion-channel
MNDELTEVLAWLQGHPLTYTLAALAGLVLTAWLANWVTRHILLRGLRRLVSATALAKSPELTPLGVIGRLANVVPALVLAIGVRLVPGLPAAVATVVENVASAFIVLTVALALSGTLNLVNALYQRRPDAHLRPIKGYIQVVKIAVYVIAAILVVASLVDRSPLILLSGLGAMAAVLLLIFQDTLLSLVASVQLSSNDMVRVGDWIEMPQLNADGDVIDIALHTVKVQNWDKTITNIPTKRLISDSFRNWRGMREAGGRRIKRSLFLDQQSIRFLTDEERHRLDRFALLDGYLPAKEAELEAWNASLPGGERDIVNRRRVTNIGTFRAYVDRYLRKHPGIHQQMTLMVRQLAPTSDGLPLELYCFTNTTAWVAYEGIQSDIFDHLLAILPEFGLRVFQHPSGADMRALGEHLPALSGVPAPPVL
>NZ_CP022958.1|WP_141017037.1|1068979_1070713_-|glutamine--tRNA-ligase/YqeY-domain-fusion-protein
MNPNDNKDGAPVAPSNFIRNLIDEDNRSGKWGGRVETRFPPEPNGYLHYGHAKSICLNFGLAESYGGTCHLRFDDTNPEKEEQEYVDSIIEAVQWLGFEWREHLYFASDYFDIMYACAESLIEAGKAYVDSLSAEEMRALRGTLTEAGKDSPYRNRSVDENLDLFRRMRAGEFAEGAHILRAKVDMASPNINLRDPAIYRIRKATHHRTGDNWCIYPMYTFAHPIEDAIENITHSICTLEFEDQRPFYDWLLDALAAAGHFPRPLPQQIEFARLNLTYVVLSKRKLIQLVDEGYVNGWDDPRLPTLVGARRRGFTAEGFRRFAERIGVTKSDSWIDMSTLEECMREHLNEAAERRVAVLDPLKLILTNYAEGASELCQAPNHPLKPELGKRDMPFGRELWIEREDFMETPVKGFHRLYPGNTVRLRYGYVVKCTGCEKDADGNITAVLAEYMPDSKSGTPGADNYKVKGNLHWVSAAHGYGAEIRLYDRLFAHPHPGQRREGDVEGVERSFIDDINPDSKRVIRAWLEPALRAAKPEERFQFERHGYFVADRRDSMDGAPVFNRTVTLKDSWAKGGK
>NZ_CP022958.1|WP_141017036.1|1067707_1068853_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MTFARRLLPFIIVLAALSAAGWWFTRPKPVAVVVHEVGRGRVEASVANTRAGEVEACQRTKLATIAGGRIDYLGVKEGDRVEAGQVLMRLWHGDLRSRAAVAEAQLATARQRSTEACTVAANAHSEAERQAALVKRGFVSASVEEKARTEAAARAASCASAKSDVKTAERQLESIGTDFNRIMIVAPFAGTVAKITGELGEISTPSPPGVPTPPAIDLIDDSCLYVKAPMDEVDAPKIHPGQPARISFEALPDRTFAGKVKRIAPYITAVEKQARTVEVDVDFANAEEARGLLVGYSADVEIVLDTREDVLRIPTAAIREGNRVLVLGGDGILTERTVKPGLANWEQTEVLDGLAAGDRIVTSLEREGVKAGARATVEGTR
>NZ_CP022958.1|WP_141017035.1|1066979_1067693_-|ATP-binding-cassette-domain-containing-protein
MAQIELDGIERTFTLGDSQVHALCNVSLAIEAGEYVAVMGPSGSGKSTLLNLLGLLDRPDAGHYRLEGRDVTTLSADEQAEVRRNRIGFVFQSFHLVPRLTAAENIALPLMLAGMPLAERNARVARALKAFGLETRAGHRPDELSGGQRQRVAIARATIMQPAMLLADEPTGNLDRATGQEVTELLEALNAGGTTLIVVTHDPVMGNRARRRLMMEDGALRQDLRGEAMTTAAAPAS
>NZ_CP022958.1|WP_141017034.1|1065774_1066983_-|FtsX-like-permease-family-protein
MTPADTLRFATRAALGYPLRTALMVLAMAIGVAAVVVLTALGDGARRYVVGEFASLGANLIIVLPGRNETGGVNAGSFITSTPRDLTVNDASALLRAPLVSRMAPLSVGNSEIAVGGKLREVMVLGTSADYVDIRHYSVAQGRFLPREDLNRASAVAVIGDTLRAELFGSEPAVGRMVRVGDTRLRIIGVMAPGGQGLGLNTDELVMVPVATAQAMFNTNTLFRIMVEARSREALGPAQKQLEDILRSRREGELDVTLITQDAVLGTFDRILGALTMAVAGIAAISLAVAGILVMNVMLVAVTQRTGEIGLLKALGATGRNIRLAFLTEAALLSIAGAIVGYGLGQLGAWAIRLALPVLPAWPPDWAVIAGLGTALGTGLLFGVLPARRAARLDPVQALAKR
>NZ_CP022958.1|WP_141017033.1|1064560_1065760_-|FtsX-like-permease-family-protein
MLWRDFLQLSLRSLTAHRLRSFLTLLGIGVGIAAVILLTSIGEGLHQFVLQEFTQFGTNIIKVTPGRQGARGGPPGLPSTTREITLDDAAALERVPFVTGVTPGVSGNSEVRANGRTRRTFILGVGPRMDRMFSIRVKSGRFLPPDAAGNARAFIVLGATLKRELFGNDNPLGERVQIGSERYRVIGVMESKGQFLGMDLDDAAYIPTARALALYNRDGLMEINLTYDESVPAARVAAEVKKALMIRHGREDFTLTTQEDMLATLSNILGILTAAVGALGGISLLVGGVGIVTIMTIAVAERTNEIGLLVALGARRRTILGLFLGEAVALAAIGGLLGLAIGAGLAQVVGIFVPALPVTTPWHFVFVAEAVAVLIGLTAGVLPARRAARLDAVDALRAE
>NZ_CP022958.1|WP_141020581.1|1064302_1064518_-|hypothetical-protein
MHRLACILALGCTASALAAPAPWFVWRSKLDGREHCAQTSPGQGWERVRGPYRDLRCSQPVSPPTAPPGLR
>NZ_CP022958.1|WP_141017032.1|1063888_1064125_-|hypothetical-protein
MTFIDSPIGRCEAVKEMVLLDETQAECAREHNCPPGRVCPLEACFTPVSGISEEHAVELAKAMRRTAAKMRREQARAA
>NZ_CP022958.1|WP_141020580.1|1063077_1063779_+|pseudouridine-synthase
MADRGICSRREADELIERGWVFVDGKRVSELGTRIDPDARVVLAPEAKRAQAQRVSILLHKPVGYVSGQPEPGYEPAVVLIGSDTQFDRDTAQRFHPSQLKGLAPAGRLDIDSTGLLVFTQDGRIARQLIGDDSKVEKEYLVRVEGQLAENGLALLNHGLWLDDKPLRPATVEWINDDQLRFVLREGRKRQIRRMCELVGLKVVGLKRVRIGRVKLGDLPLGQWRYLREDEAF
>NZ_CP022958.1|WP_141017041.1|1073451_1076748_-|DEAD/DEAH-box-helicase-family-protein
MTSPDSYTEADIIGWLGQHEVDKGRAYLPAVSQLECSGDILHARVRGTRATPYAVTAQVRSDPWRGPFLLSHCTCPVGDSCKHVAATLLAWLARREGPERPREQVLAWIDAFREAAAPPAEKEARARKAASAVHALRYLIQHAGSGEYLVSCHKVRLDKHGQIRGAESWTNFERAFEAPPSFIDDVDLDILGLLWAQRPRGRHLPHALPLDGRHAATLLDKLVASGRAHLDALDKPALHAGGSRPGIPEWHTTREGLRAASLKLTPPADCVLPLQPPWYVDRATGLAGPVTLEAPVEQIVRLLRLPPLTPTEAELVADALHDLAPQLPAPLATGEPPLKLDGKPVPVLRIGTVPVYSVNFRDYPAYGVTRFDYATLAFRYGPLTVEAADTALFHVLDDGRSARLTRDHPAEAAAARRLTHAGFAKVAPAKVHAGYAGAPPHMLGLACESDWARFTAEDVPALRAEGWAVEMPEDFRHHAIDIDELLLDVDEGEGGWLDISPGIEVEGRRLALAPLLAELFAQDPRWLSGGLERIADTEPVILHHDILGRLRLPAGRLKPLVRALVDLFDHAAGPSLRLSRLDSVRLAELALPGRGAATLAAYAARLRDSSGVAAVAQPAGFRAELRPYQLEGLAWLQHLVRNDLAGILADDMGLGKTAQTLAHLLALKQAGRLDRPALVILPTSLVFNWQAEAERFTPDLRVLKLHGSDRHGLFEQLDAGKRKSRIDVAITTYPLLWRDAEALQAREWSLLILDEAQTVKNVASKGAQVIRQLKARHRLGLTGTPLENHLGELWAQFDFLLPGFLGDQKHFVKTWRTPIEKHGDTVRRDLLAARLKPFILRRRKEDVAKELPPKTVIVRSVGLEGGQRDLYETVRAAMNGKIRDEIAAKGYARSQIVILDALLKLRQVCCDPRLLKTTAAAAKVKERAKLDLLMGMLPELIDEGRRILVFSQFTQMLALIAAELDKAKIGWVALTGDTRDRRIPVEDFQKGRAPVFLISLKAGGVGLNLTTADTVIHYDPWWNPAAENQATDRAHRIGQDKPVFVFKLICAGSIEERILALQEKKAALAAGVLSEDANALAKFGESDIAALLAPLPEA
>NZ_CP022958.1|WP_141017042.1|1076976_1078077_+|hypothetical-protein
MQPIDWHFPRTGLASDYLEKLFDQGIARLAFFGRRRIGKTEFLQRDLLPAAEAKGVVPLYCSFWENKDQPHLAFARALQAAMPESRWKPKLRLGFSAGLDLSAEVERADRPQAAPPDQLTAVAGLFDAWVRHLGGRGALIVLDEIQHLATSAQFATFAASLRTLLDTAPSTMRVVFTGSSLADLQRLFEDQRAPFFNFATVLDFPPLERPFVEHLVAIHRHITGLACDGDALWALFERVGRNAQLVTGLVERMVLLATDDWRLVWAQIEESLVGQDGWCERLWAGLALSDKAVYLRLLEGRDLFSEESLAIYSRLGFSRGVAQQALRRLVNRSLLYRQGHGEYLRVMPLLDEWLKGRGLNSESLPA
>NZ_CP022958.1|WP_141017043.1|1078165_1080082_-|phosphomethylpyrimidine-synthase-ThiC
MNAKEHFIATQAKVDEAAIAPLPNSRKIYVEGSRPDIRVPMREISQSDTPASFGAEPNPPIYVYDCSGPYTDPQAKIDIRSGLPALRAGWIAERGDTEQLADLSSEFGRQRATDPKLDELRFPGLHRKPLRAKAGANVTQMHYARRGIVTPEMEFIAIRENLRRKEYVESLKAAGPTGTRMAELLARQHPGQHFGAAIPAEITPEFVRDEVARGRAIIPNNINHPESEPMIIGRNFLVKINANIGNSALGSSISEEVDKMTWSIRWGGDTVMDLSTGKNIHETREWIIRNSPVPIGTVPIYQALEKVDGKAEDLTWEIFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIMAKWCLAHHKESFLYTHFEEICEIMKAYDVAFSLGDGLRPGSIYDANDEAQLGELKTLGELTQIAWKHDVQVMIEGPGHVPLHMIKENMDLQLEQCHEAPFYTLGPLTTDIAPGYDHITSGIGAATIGWYGTAMLCYVTPKEHLGLPNKQDVKEGIITYKLAAHAADLAKGHPGAQIRDNALSKARFEFRWEDQFNLGLDPDKAKEFHDETLPKESAKVAHFCSMCGPHFCSMKITQDVRDFAAKEGIAEEDALKKGMEVKAVEFVKSGAEVYRNV
>NZ_CP022958.1|WP_141017044.1|1080161_1081028_-|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MSSSSTSPRSIPNVLSIAGVDPSGGAGIFADIKTFSALGAYGCGVIAALTAQNTQAVTGVHVPPTDFLRLQLDTLFADVAVHATKIGMLGSAEVTATVADRLAHWQAKNVVLDPVMVAKSGDTLLAKNAIAMMREALFPQSFMITPNLPEAGVLLEQRAPESVKEMYRAAERLRELLPLSSERWVMLKGGHLPSSEVVDLLFDGDRMIELPAPRIDTKNTHGTGCTLSSAIAALLPQAAGAQWGALRPVEAAVRQARQWLLGAIAHSGELAVGSGHGPVHHFHALWRR
>NZ_CP022958.1|WP_141017045.1|1081250_1082810_+|carbonic-anhydrase
MKLRLIVAALSVPLSLGLVPSAVADEWQLVLSDRDRRVEIDRASIFDSDRGTKVSWGRVVLSPDEARKSGYATIRALNRYDCANRSFFTIKRVYLDGAGRVIREEAVTDASPVLVARNSVDERMWREVCRPPTVSDLEKLAVAAEAKAKAAPAVKPQASAGIKPDGPVRAAPGVAAATPAAAPAKPAPTPQPAVRAADYKPADAGSVPSRDKVAEAVAVPAGGGTPAAAPMPVQRPAPATQSASVADAAPRPLSPAVSASSSPPASVPATSPARAESSRPTPAAQAARAAAALTDSRWSYEGDTGPEHWAKLRPDWKLCSEGSRQSPVDLREGVAVDLEPVRFDYRTTRFRITDTGNTLQVNVGEGMGIEVRGRRYELTHLTLHRPSEERVGGRAADMSAHFHHRDLDGRLATVAVMLERGAEANPLLQALWNNLPLEKGSGYMPATTIDLGAFLPASPAHFLYMGSQTTPPCTEGVLWVVMKTPVPVSDEQLGIFARLYPRNSRPIQPANGRLILESR
>NZ_CP022958.1|WP_141017046.1|1082837_1084241_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MLMVSLDSSHPTPLVEQIVEAVRGQIDDRILRPGMRLPPIRRLAETQRVSRFTVVEAYDRLVALGYLHSRRGSGFYVAPRRDPAGDRSTAATDRAVDVAWLMRQVLDDKPGVIKASTGWLPESWLDEEGLRRHLRTLSRRADARLTGYGTPQGYLPLRRQLQVKLAEFGIGAPPEQIVLTEGATSALDIVARHLVKPGDTVLVDDPGYFNFFGNLRLQGAKLIGVPRGSDGPDIAALEALLEHHQPRVFFTHSVLHNPTGADLSPSAAFRILQLAEKHDFLVIEDDTYADFHPHASTRLATLDQLNRVIFVGSFSKTLSGSLRVGFFAARPDLVAELTDVKLLTTLCSSEFNEQLVYQMLTDGHYRKYLERLHGRLARATEATLRMLERTGLETFIEPRGGVFLWARPPGIDDAAALATRAATQGIMLAPGKAFRPQMQASPWIRFNVAFSTDPAVERFLGEHLGAG
>NZ_CP022958.1|WP_141017047.1|1084408_1084933_+|hypothetical-protein
MDTRRDGHRAVGTQQVAPRLLRWWHGGAVAVVTAALAGTVLSACGGPAGAPGGALGDLEWPERQVVFRLVAQPLRLEAYSIRGGVAPLGSVPLSLDCPQAMALDESGGRMWVWGAQGGVAVDSRSLRVVGQWGSNAEDAVLMADVVRRGLAVTRVRGVCGTGVALVRTEKGSLP
>NZ_CP022958.1|WP_141017048.1|1085023_1085728_+|TetR-family-transcriptional-regulator
MAGRREGGKQQAGAVVADTGGNAPVRRRRKEARPQELTAAALALFVEKGFAATRLDEVAARAGVSKGTLYLYFDNKEALFKAVINEGIVPAIDAAEALLADYANDPVGLLRAFLLGWWERIGSTEFGGIPKLMMSEAGNFPEVASYYNDAVIERGLGLLRIAVQRGIDIGVFRPVDPDLIGTLLIAPLIHLTMWRHSFAACCGKGIEPRAYVAAHIDLVLHGLKAQPGRAGDVR
>NZ_CP022958.1|WP_141017049.1|1085724_1086819_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MKRKSAMAVLVTLSLTACSPPAPPQAVLPTVLVRSVGKAGGAAAMQVYTGEVRARFESDLGFRIGGKLVERRVDVGAVVRRGQVLARLDPQDAELAAAAAVAQVAAAEADVALARAELERAQGLRARNFISASALDTRSSAHDAAAARLRQARAQAATARNQAGYAELVADSDGVVTGQAAEVGQVVAVGQAVFRLARPGEREVLIHAPENRVRQLVPGVKAVVRLWSVPDQAYPGVVREVTPMADAATRTFAVRVSVPAADAALQLGATATAAFATDSADTVVLPGAALSRDAGRDVVWLVDGDGIVRPQAVDVIAYREDGAVLRANLPDAARVVVAGVHKLVAGEKVRSVEEGAPVALDVQR
>NZ_CP022958.1|WP_141017050.1|1086815_1089995_+|efflux-RND-transporter-permease-subunit
MSGRRGFKRGFNVSAWGLEHPSLVLYFLVALTLIGSLAYTRLGQSEDPPFTFKVMVVRAEWPGASAQEVERQVTDKIEKKLQEIAQIDVVRSYSKPGESLVFFLAKDSTHALEIPEVWYQARKKVGDIRATLPSGVQGPYFNDEFGDTYGNIFALVGEGVSHAELKRHADAIRNELLRVPDVAKVSFFGEQPQRVFVELSNTKLATFGLNLADIASALSEQNAKTGAGFFETTDERIWLRPSGQFDDLDAIGDTLIRAKGRVFRLGDVADVKRGYLDPPGERMRFMGEDAFGIGVSMQAGGDIVALGHRLDEVVKRIEAQLPLGIRFERVADQPRAVRSSVGEFVRVLAEAVIIVMAVSLLSLGFRTGVVVLIIIPVVLAITFLFMDLFDIGLHKISLGALIIALGLLVDDAIIAVEMMATKMEQGWERAKAASFAYTSTAMPMLSGTLVTAAGFLPIATAASSTGEYTRSIFQVTVIALLVSWVAAVLFVPYLGFHLLPDFRKKNGRPSVLARIAARLSPALGRRLAERAVHAHEQHDEYAIYHTAFYTRFRALVGWCVTHRWLVILLTVGIFALSLVAFVRLVPQQFFPDSTRPELLVDLRLAEGVSHQATEASVKRLEAWLDKQDGIENYVAWLGAGSPRFYLPLDQQLAQTNFAQFVILTRGTAEREALRARLIRLFEDEPWPLRAAINRLENGPPVGFPVQYRVSGQDIGEMRRIAHRVAEAMRAQSQLSNVQLDWEEPSKSISLKVDQDKARLLGVSSQDLATLLATSLQGTTVSQFREGSETIQIVLRGAESERVHLGLLPDLAVPVSGGRSVPLAQLATPEYGFEEGVIWRRNRVPTVTVRANLYGTVQPAVVVQQLAPRMDEIRAGLPLGYRIEVGGSVEESGKGGGSVAAGVPLFVLVVLTVLMLQLQSFSRTLLVVLTAPLGMIGVTLFLLIFNKPFGFVAMLGTIALSGMIMRNSVILVDQICQDIGAGREPWDAVVESTVRRFRPIVLTAAAAILAMMPLSRSAFFGPMAVAIMGGLTVATVLTMLFLPALYAAWYRVRPAQQAGG

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Crispr_ID: NZ_CP022958_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP022958_3

5179013-5179117

Orphan

Consensus_repeat	Method
GACAGCCCCCACGCTCACTGCGTTCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP022958_3

>merge|NZ_CP022958|3|5179013-5179117|CRISPRCasFinder
GACAGCCCCCACGCTCACTGCGTTCGCTGCCCCCCAAGGGGGCTTCGCCATACTTGGGACGGCCCGGCGCATGGCGACGACAGCCCCCACGCTCACCGCGTTCGC

>NZ_CP022958|3|3|5179013-5179117|CRISPRCasFinder
GACAGCCCCCACGCTCACTGCGTTCGC	TGCCCCCCAAGGGGGCTTCGCCATACTTGGGACGGCCCGGCGCATGGCGAC
GACAGCCCCCACGCTCACCGCGTTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP022958.1\|WP_141020317.1\|5168858_5169986_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380187
NZ_CP022958.1\|WP_141020319.1\|5170355_5171288_+\|hydrogenase-nickel-incorporation-protein-HypB	unknown	unknown	gnl\|CDD\|182479
NZ_CP022958.1\|WP_141020336.1\|5189284_5190238_+\|homocysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|224951
NZ_CP022958.1\|WP_141020323.1\|5175062_5176115_+\|hydrogenase-expression/formation-protein-HypE	unknown	unknown	gnl\|CDD\|100033
NZ_CP022958.1\|WP_141020329.1\|5182820_5184209_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226654
NZ_CP022958.1\|WP_141020322.1\|5173900_5175043_+\|hydrogenase-formation-protein-HypD	unknown	unknown	gnl\|CDD\|237892
NZ_CP022958.1\|WP_141020330.1\|5184190_5184685_-\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|214900
NZ_CP022958.1\|WP_141020316.1\|5168283_5168859_+\|[NiFe]-hydrogenase-assembly-chaperone-HybE	unknown	unknown	gnl\|CDD\|378765
NZ_CP022958.1\|WP_141020320.1\|5171284_5173660_+\|carbamoyltransferase-HypF	unknown	unknown	gnl\|CDD\|223146
NZ_CP022958.1\|WP_141020332.1\|5185923_5186523_-\|peptidase-S16	unknown	unknown	gnl\|CDD\|225362
NZ_CP022958.1\|WP_141020324.1\|5176128_5177586_+\|sigma-54-interacting-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP022958.1\|WP_168225015.1\|5181244_5182789_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP022958.1\|WP_141020333.1\|5186569_5187199_-\|UbiX-family-flavin-prenyltransferase	unknown	unknown	gnl\|CDD\|180312
NZ_CP022958.1\|WP_141020331.1\|5184805_5185906_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
NZ_CP022958.1\|WP_141020335.1\|5188084_5189122_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|227311
NZ_CP022958.1\|WP_141020318.1\|5169978_5170338_+\|hydrogenase-maturation-nickel-metallochaperone-HypA	unknown	unknown	gnl\|CDD\|376468
NZ_CP022958.1\|WP_141020321.1\|5173664_5173904_+\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	unknown	unknown	gnl\|CDD\|376549
NZ_CP022958.1\|WP_141020334.1\|5187436_5187988_+\|TIGR01841-family-phasin	unknown	unknown	gnl\|CDD\|378164
NZ_CP022958.1\|WP_141020327.1\|5179690_5181139_+\|HupV-protein	unknown	unknown	gnl\|CDD\|380187
NZ_CP022958.1\|WP_141020325.1\|5177595_5177895_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP022958.1\|WP_141020317.1\|5168858_5169986_+\|hypothetical-protein	gnl\|CDD\|380187	NF033181, NiFeSe_hydrog, nickel-dependent hydrogenase large subunit. Members of this family are the large subunit of the periplasmic nickel-dependent hydrogenase. Some members contain a selenocysteine residue.	5.29521e-10
NZ_CP022958.1\|WP_141020319.1\|5170355_5171288_+\|hydrogenase-nickel-incorporation-protein-HypB	gnl\|CDD\|182479	PRK10463, PRK10463, hydrogenase nickel incorporation protein HypB; Provisional.	2.41758e-143
NZ_CP022958.1\|WP_141020336.1\|5189284_5190238_+\|homocysteine-S-methyltransferase	gnl\|CDD\|224951	COG2040, MHT1, Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism].	6.71176e-33
NZ_CP022958.1\|WP_141020323.1\|5175062_5176115_+\|hydrogenase-expression/formation-protein-HypE	gnl\|CDD\|100033	cd02197, HypE, HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.	1.17027e-167
NZ_CP022958.1\|WP_141020329.1\|5182820_5184209_+\|PAS-domain-containing-protein	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	2.88892e-46
NZ_CP022958.1\|WP_141020322.1\|5173900_5175043_+\|hydrogenase-formation-protein-HypD	gnl\|CDD\|237892	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional.	0
NZ_CP022958.1\|WP_141020330.1\|5184190_5184685_-\|flavin-reductase-family-protein	gnl\|CDD\|214900	smart00903, Flavin_Reduct, Flavin reductase like domain. This entry represents the FMN-binding domain found in NAD(P)H-flavin oxidoreductases (flavin reductases), a class of enzymes capable of producing reduced flavin for bacterial bioluminescence and other biological processes. This domain is also found in various other oxidoreductase and monooxygenase enzymes... This domain consists of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. The flavin reductases have a different dimerisation mode than that found in the PNP oxidase-like family, which also carries an FMN-binding domain with a similar topology.	2.21853e-51
NZ_CP022958.1\|WP_141020316.1\|5168283_5168859_+\|[NiFe]-hydrogenase-assembly-chaperone-HybE	gnl\|CDD\|378765	pfam11939, NiFe-hyd_HybE, [NiFe]-hydrogenase assembly, chaperone, HybE. Members of this family are chaperones for the assembly of [NiFe] hydrogenases, in the family of HybE, which is specific for hydrogenase-2 of Escherichia coli. Members often have an additional N-terminal rubredoxin domain.	1.12403e-52
NZ_CP022958.1\|WP_141020321.1\|5173664_5173904_+\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	gnl\|CDD\|376549	pfam01455, HupF_HypC, HupF/HypC family.	9.29681e-32
NZ_CP022958.1\|WP_141020332.1\|5185923_5186523_-\|peptidase-S16	gnl\|CDD\|225362	COG2802, COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only].	1.68054e-40
NZ_CP022958.1\|WP_141020324.1\|5176128_5177586_+\|sigma-54-interacting-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	1.84856e-150
NZ_CP022958.1\|WP_168225015.1\|5181244_5182789_+\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	3.66888e-59
NZ_CP022958.1\|WP_141020333.1\|5186569_5187199_-\|UbiX-family-flavin-prenyltransferase	gnl\|CDD\|180312	PRK05920, PRK05920, aromatic acid decarboxylase; Validated.	6.95567e-125
NZ_CP022958.1\|WP_141020331.1\|5184805_5185906_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	4.61939e-139
NZ_CP022958.1\|WP_141020335.1\|5188084_5189122_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	6.69634e-68
NZ_CP022958.1\|WP_141020318.1\|5169978_5170338_+\|hydrogenase-maturation-nickel-metallochaperone-HypA	gnl\|CDD\|376468	pfam01155, HypA, Hydrogenase/urease nickel incorporation, metallochaperone, hypA. HypA is a metallochaperone that binds nickel to bring it safely to its target. The targets for Hypa are the nickel-containing enzymes [Ni,Fe]-hydrogenase and urease. The nickel coordinates with four nitrogens within the protein. The four conserved cysteines towards the C-terminus bind one zinc moiety probably to stabilize the protein fold.	5.24252e-48
NZ_CP022958.1\|WP_141020320.1\|5171284_5173660_+\|carbamoyltransferase-HypF	gnl\|CDD\|223146	COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP022958.1\|WP_141020334.1\|5187436_5187988_+\|TIGR01841-family-phasin	gnl\|CDD\|378164	pfam09361, Phasin_2, Phasin protein. This entry describes a group of small proteins found associated with inclusions in bacterial cells. Most associate with polyhydroxyalkanoate (PHA) inclusions, the most common of which consist of polyhydroxybutyrate (PHB). These are designated granule-associate proteins or phasins.	1.11158e-08
NZ_CP022958.1\|WP_141020327.1\|5179690_5181139_+\|HupV-protein	gnl\|CDD\|380187	NF033181, NiFeSe_hydrog, nickel-dependent hydrogenase large subunit. Members of this family are the large subunit of the periplasmic nickel-dependent hydrogenase. Some members contain a selenocysteine residue.	9.25358e-120

>NZ_CP022958.1|WP_141020325.1|5177595_5177895_-|hypothetical-protein
MTGLPHFEQDLGDIIHELAAMAELCGVRLRDPGVMDAVLQNDALMRHQNEVAFDKMRGLLVLAFSTVERSAATEGIHLTAEFVRRALAEIDERRDRLGG
>NZ_CP022958.1|WP_141020324.1|5176128_5177586_+|sigma-54-interacting-transcriptional-regulator
MTPPLPPELPSILVVDDEIRSQEALRRTLEEDFEVFTASSADDALAILEREWIQIVLCDQRMPGSSGVALLRQVRERWPDAVRIIISGYTDSEDIIAGINEAGIYQYLLKPWQPEQLLLTLKSAAEMARLHAENQRLAVELRTAAPVLEKQVSHRRASVRQQFALDAVLRAPGSPMNAVCALVKKLAALDIPVLLTGESGTGKELLARALHYDSPRAGEAFVVENCGALPDQLLESELFGHKRGAFTGAFEDRVGLFKQADGGTMLLDEIGETSAAFQVKLLRVLQEGELRPVGAARPIPVDARVIAATNRDLEAEVRNGRFREDLYYRLAALTIAVPPLRERPMDIPLIAQTLLDETQAALGRRFEPLSAEVIACLQTWRWPGNVRELRNEVLRMIALADDDRLSAAHLSPRVLRAADAGDEPALSMLSGLDGDLKTRLEALEARIVKESLIRHRWNKTHAAKELGLSRVGLRSKLARYGLERD
>NZ_CP022958.1|WP_141020323.1|5175062_5176115_+|hydrogenase-expression/formation-protein-HypE
MKANYTRPLDLKSGRVDMNHGAGGRATAQLVSELFARAFDNPWLAQGDDGAVLPAPAPGERLVMAADGHVVSPLFFPGGDIGSLAVHGTVNDLAVMGARPLYLSASFILEEGYPLAELKRIVDSMAAASRAVGVPVVTGDTKVVEQGKGDGVFIATTGVGALPAGRAPGGARARPGDVVLVSGSMGDHGMAILAVRESLAFDSEIRSDSAPLACLVESLFGAVPAEAVRVLRDPTRGGLATTLNEIARQSGAGMLIEEAAIPVHPQVEAACELLGLDPLYLANEGKLIVVCDPEHAGAALAALRAHPLGAGAARIGTVTADEHHFVQLRTALGGMRMLDWLSGEPLPRIC
>NZ_CP022958.1|WP_141020322.1|5173900_5175043_+|hydrogenase-formation-protein-HypD
MKYVDEFRDGELARGIGKAIRREANPARDYAFMEFCGGHTHAISRYGVIDLLPQNVRMIHGPGCPVCVLPVGRIDMAIGLAMKQSVTICTYGDCLRVPASDGLSLLKARARLDKSRADIRMVYSAADALALAQREPQREVVFLAIGFETTTPPTALVLKQAQALGLKNFSVLCNHVLTPAAIVAILEHPEGNGVQLDGFVGPAHVSTVIGSRPYDFVAAQYKKPVVIAGFEPLDVMQSILMLVRQVNDGRFEIENEFTRAVTRDGNRKAQALVAEVFGLRDSYEWRGLGSLPQSALQIRPEFAAWDAEAKFGLSYAPVADHKACECGTILRGEKRPADCKLFGTVCTPETPMGSCMVSSEGACAAHYNYGRFRDVAVVAA
>NZ_CP022958.1|WP_141020321.1|5173664_5173904_+|HypC/HybG/HupF-family-hydrogenase-formation-chaperone
MCLAVPARVAELLPNDTARVELGGVTKEISLALVDEVAVGDYVIVHVGYALSKLDREEAEATLALFAEAGLTPSLEGTA
>NZ_CP022958.1|WP_141020320.1|5171284_5173660_+|carbamoyltransferase-HypF
MSDDTGTSPRQHSRHERRRLRVRGVVQGVGFRPFVYRLAQELDLSGWVRNDGGGVEIEVQGSPGNLSALAARLRGEAPPLARIDHLESELREFDPADRGFTITASRSGEVTTAIGHDSTVCPACLDEMFDPAGRRWRYPFINCTHCGPRYTLTRGLPYDRVNTSMAAFALCDDCADEYSAPTDRRFHAEPNACPVCGPRLTLLEGFGITVATRDPVADTLLRLLCGEIVAVKGLGGFHLMCDARNPEAVSRLRERKSRENKPFALMVANLESARHWAKLSGADEQLLASAERPVVLCDKRASVDSELWGVAPALSSVGLMLPYAPLHYLLFHDYAGRPAGTGWLDKALDLALVCTSANPGGEPLVTGNREATRRLMGIADAYLIHDRDIVVRCDDSVMRSLPATRYDDSGVQFIRRSRGYTPRALKLSCKGPAVLAFGGLLKNTLCLTRGDEAFLSQHIGDLESASACQALDEVAEHMQRILALSPQAVAHDLHPDFPSTRAAEALAERLGIPAFAIQHHHAHVAAVEAEHHHHGPVLGLALDGVGLGTDGNAWGGELLRVEGPRFQRLGHLAALPLPGADKAAREPWRMAAAVLHRLGRGDEIASRFHDESAAWRMADLLAAGTRCPPTTSLGRWFDAAAGLLGVCRRMGYEGEAAMRLESLAAGFGPVLPLPGGWRIAEGGTDGGTLDLLPLLATLADETDAARGAALFHATLAAALEAWTLRAADIAGVHTVALSGGCFLNRLMSRDLSRRLAARGLTVLEARQAPPNDGGLALGQARIARHLLNEGI
>NZ_CP022958.1|WP_141020319.1|5170355_5171288_+|hydrogenase-nickel-incorporation-protein-HypB
MCTVCGCGSGELRYNGQPARRAGTGKPADAAATRAFRPLDAATPPHDHPQHDHHAHQPAANAGALDYGQGPAHAHAPGLSQQQMVKIERDILGKNDALAAANRRWLAARGVFALNLVSSPGSGKTTLLVKTIERLAGRVPVAVIEGDQQTEFDAERIRATGAPALQINTGKGCHLDAHMVGEAFARLPIAERSLLLIENVGNLVCPAAFDLGEAHKVVILSVTEGEDKPLKYPDMFAAADLMLLSKVDLLPYLSFDVDRAIAYARRVNPRLQVLQVSSTTEHGFEDWLGWIQTGLNHQAGAPASPAESPS
>NZ_CP022958.1|WP_141020318.1|5169978_5170338_+|hydrogenase-maturation-nickel-metallochaperone-HypA
MHEMSLAEGIRSIVEDAAREHRAGRVDKVVLEIGELAAVEVEALRFCLDVVLKDSVADGAGIDIETVPGTGWCMQCAATVPIAQRYDACPQCGSYQVQPTGGTEMRVKELALADDRPAP
>NZ_CP022958.1|WP_141020317.1|5168858_5169986_+|hypothetical-protein
MGAAADPALLLHATLDGGQVGRVVADNRRPQAAQLLVGRSPAEAVALVPRLFALCGCAQGTAARLACAAALGEPGAADAAATERELAAEAAHEHLWRLLLDWPPLFGLQPRRNRYAELHRRLVRPLDADSAYALGGDLLDLVARELLAGFFRALREPRNLAEFVDHAAAGGDLGSILAEMIGIGAAEAPAGGVCPLLPALTAAQWIEHLGGLPDAAFCRQPMLDDAPAETGPLARHAASPLVALLLGQGHRISARLFAKVLDVADCGSRLRRPLAAEVPALADAVSPAPGLGLACVETARGVLLHAVRIENDRIADYAICAPTEWNFHPGGAFVREGGGWRTASADTARLRLQALALALDPCVGFRVELEESTHA
>NZ_CP022958.1|WP_141020316.1|5168283_5168859_+|[NiFe]-hydrogenase-assembly-chaperone-HybE
MNHATATAPRPFAPALPPADRVAALHDCFAAIAATRMAGLPLCNPALAVAVPAMQVWEGEWLGVLVTPWAISLVLLPGPGGRFREIGVGESQEWAFPSGTYEFLGNREEGLGAYQSCSLASPVFEFASQDEADAFARAALAALLEADAGRLAAQGREDREAARLEGRPTPAPAPQPLSRRAFLRGALFGAR
>NZ_CP022958.1|WP_141020327.1|5179690_5181139_+|HupV-protein
MTRVVVGPFNRVEGDLEVTLDVADGRVAAARVNSPLFRGFEQILGGKDPRDALVFVPRICGICSVSQSAAAAAALREVMGLTVPANGERAANVVLAAENLADHFTHFYLFFMPDFARDAYRGRPWFDTAHARFKAVEGSAAADALPARAAFLQLMGVLAGKWPHTLSLQPGGSAKAVSAAEKIRLFALLREFRGWLERRLFGDSLEAVAALDSVAALDAWADARAPQHSDFRLFIEIARDLGLQRIGRATDVFLSYGAYGEGDKALFARGVWRPGAEPAAFDPALIVEDVSHAWLRADAARHPWQGHTWPDADKTDAYSWCKAPRLGGEVVECGALARQLVDGQPLLRELVVRDGGSVYARVLGRLLEFARVLPAMEAWVRAFEPGAPFCAQGELPDEAQGVGLVEAARGALGHWLVVRHGRIANYQIIAPTTWNFSPRDAAGTPGALEQALVGLPAGGDEEPLAVQHVVRSFDPCMVCTVH
>NZ_CP022958.1|WP_168225015.1|5181244_5182789_+|diguanylate-cyclase
MEKTASNWGLSAVRWAVAGAFLLFVTDLLLAWVLWNERERTLERGRETAAQAATVALRRADNLFELLDRTLSGVSEVVAARERPPSREDLYLHRLLLRRQAITPTLVWLSILNPEGQLMTSSRLYPPPRLELGDRDYVIAQTEHWDHELFIGSPVATRTTGEAVVPISRRIVNDGGRFIGVIAGGLDIGFLQELVTDTAPQDGLVLGIFRNDGHALACLPSRAACPDAPLPVMELIDHDHHDARATVTDRRLLGPGKGIAAYAASKDGQFFVVADLPTKPLLAAWHTNLPIFMVIAFGGNIALAVLGLFAYRQAQRRRQALEALASANRNLENRVRERTRELHQLAHTDVLTGARNRRAFMSEGDALFALAHRHQRDLAVMVLDVDRFKAINDRYGHAGGDAVLRALATVPQAVLRGSDLFARLGGEEFAIVLPETSRDGAIEVGNRLLAAFRDCAVEHDGQTLHFTVSIGLSVRESTDRDLEALLHRADAALYRAKEGGRDRLEWSPASARLC
>NZ_CP022958.1|WP_141020329.1|5182820_5184209_+|PAS-domain-containing-protein
MPDQPKSHDPLPPLQHTGHPGELVGVGEDVWMDVIHKMDEVYSDLLQYEVALEEKNAKLEESQQFILSVLTSISDILVVCDRNGAIEEVNRSLEDFTGRDLAALRGTSVFELLADDQARAQLRHLFAVFGDQALHDCELPLRARDGSAVPVSLNCTPRFNAVGKSMGMVVTGRPVGELRRAYQALRQAHDDLKRTQQQLLHSEKMASLGRLVAGVAHELNNPISFILGNVHALKRYAGRLESYLGAIHGGDSADHIAQLRARLRIDRLLGDLPALIDGTIEGAERTRDIVDGLKRFSAIDREVNESFDLAAVIERAVSWVKRGARDSFHVRFSMPRKIPMTGSAGQMQQVMMNLVQNAWDATADQPEQWLDIVAEPDGNAGLLRVSFHDNGPGIDDKHLAHVFDPFFSTKQVGKGTGLGLSISYGIIERHGGRITAGNHPAGGAIFIVELPLPGSADQARRR
>NZ_CP022958.1|WP_141020330.1|5184190_5184685_-|flavin-reductase-family-protein
MSHQKSSPADFSRNFRNALGMFATGIAVVTTRTPEGDPIGLTINSFNSVSLEPPLIVWSLANQLPSRAIFENCEYYAINVLAEDQEPLSRLFSTRSDDKFGSLDVDTGVGGIPLLKGCCARFECRNTVRHPGGDHVVFLSEVLNFDRQSLPPLIYHGGAYRRLA
>NZ_CP022958.1|WP_141020331.1|5184805_5185906_+|A/G-specific-adenine-glycosylase
MNTPKPDTTPDTGPQDFAHRLIRWQRAHGRHDLPWQGGSDPYRIWLSEIMLQQTQVDTVIPYYQRFLERFPALADLAAAPVEDVMALWSGLGYYARARNLHRAAVEIASRHGGSFPRSAAAIAELPGIGRSTAAAIAAFAYGERAAILDGNVKRVLCRAFGIDGFPGEKAVENRLWALAESLLPATGVGRYIQAQMDLGATVCTRGKPACVRCPFEADCVARSTGRIAELPVARPKKAVPRRQSRMAVVVSNGRVLLERRPPSGIWGGLLALPEIPQDATNIGSWMHGTLGLRAATMAPLPPLTHVFTHFVLEIAPLRIDIEDDTALARDDGAQCWLALADIAGAALPTPVRRILEGLVAPDLFGG
>NZ_CP022958.1|WP_141020332.1|5185923_5186523_-|peptidase-S16
MTDAVRLPLFPLNTVLFPDGLLPLRVFEARYMDMVTRCLREGASFGVCLIAAGPEVGDAAIPHPVGTEARIEQWDMTEPGVLSIMVRGGRRFRVEDHEVERDGLLNGTVRWLAALPSEPVPADQAELLPLLRAIVGDLGDRLPEPHHFDDAAWVGARYAELLPIPMVARQKLLELDDVVSRLEIIQQFLQQRGLLKTIN
>NZ_CP022958.1|WP_141020333.1|5186569_5187199_-|UbiX-family-flavin-prenyltransferase
MSAPKTITVAFTGASGLPYGVRLVECLLAAGCRVWLLYSQVAQIVARQEMGWTLPGRPAEVEAELAVRFSATPGQLRVFGREEWFAPPASGSNPPDAMVVCPCTMATLAAVAAGLSQSLIERAADVVIKEGRKLVLVPRETPYSAIHLENMLKLARLGVCILPPNPGFYHHPQKVEDLVDFVVARILDQLGVAHSLMARWGEAPADGID
>NZ_CP022958.1|WP_141020334.1|5187436_5187988_+|TIGR01841-family-phasin
MNQYFTAESFAATTKANLELFSKLATSALVRAERLVALNIGTSRAIFEDSIASTRALLAAKTPQELADAQATLLQPAVEAGVALARNAYEIALEGQKEVATLAEGQIVELQKAVASSLEQAAKSAPAGTEGVFATIKSVLAANSSAYDKLSEAAKQAAVLAQANVSAATDAAAKVIRLNKQAA
>NZ_CP022958.1|WP_141020335.1|5188084_5189122_-|helix-turn-helix-domain-containing-protein
MTPVEPIRIAILAMAETTASTVYGMFDLFMSAGRDWPLVTTGRAGTPLFVPVVVSQDGRPIRAANGVTIVPDLAFADCAAPALVCVPELAVAPGEPIAGRFTVELAWLRACHAHGSLLATACSGAVMLAEAGLLDGENATTHWGFCEHLARHYPAVKVHPQRALVAAGAGQRLVMAGGGTSWLDLALYLIARLASVDEAMHVARLNLIDWHHSGQQPFARLARSRQAEDALIADCQAWIADNYQRPSPVAAMVARSGLPERSFKRRFQLATGMSPIEYVHTLRLEEAKQMLEASALAVEAVALELGYEDASFFNRLFRRSVGLTPAAYRRRFGGMRQALQAAPRV
>NZ_CP022958.1|WP_141020336.1|5189284_5190238_+|homocysteine-S-methyltransferase
MSRYRNALPQLAGAAFISDGGLETTLIYHRGVELPLFAAFVLIDDEEGRRELFDYYRGYAEMAGRHRRGLVLESPTWRANADWGARLGYDAAALAAINRDGVGLMEEIRARYETPHSPMVISACVGPRGDGYIADSRMSAAEAADYHAAQIATFAGTAADMVSAFTLNYVEEAIGVVRAAQAHAMPVVISFTLETDGHLPSGQPLAEAIRETDAATAGGPHYYMINCAHPTHFEHVLDTQGADDARWTTRIRGLRANASCRSHAELDAATELDEGDPQDLGARYRGLRARLPALAVVGGCCGTDHRHVEAICTAFGH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP022958_1	1.32\|467209\|35\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467209-467243	35	NZ_LT969519	Pseudomonas aeruginosa isolate RW109 genome assembly, plasmid: RW109 plasmid 1	21586-21620	7	0.8
NZ_CP022958_1	1.32\|467209\|35\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467209-467243	35	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	1198374-1198408	7	0.8
NZ_CP022958_1	1.32\|467209\|35\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467209-467243	35	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	1186824-1186858	7	0.8
NZ_CP022958_1	1.32\|467209\|35\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467209-467243	35	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	1316412-1316446	7	0.8
NZ_CP022958_1	1.32\|467209\|35\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467209-467243	35	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	644534-644568	7	0.8
NZ_CP022958_1	1.32\|467209\|35\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467209-467243	35	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	989934-989968	7	0.8
NZ_CP022958_1	1.32\|467209\|35\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467209-467243	35	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	989879-989913	7	0.8
NZ_CP022958_1	1.34\|467344\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467344-467377	34	KX557288	Rhodococcus phage ChewyVIII, complete genome	32822-32855	7	0.794
NZ_CP022958_1	1.8\|465605\|35\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	465605-465639	35	NZ_CP049750	Rhodococcus fascians A21d2 plasmid unnamed1	55464-55498	8	0.771
NZ_CP022958_1	1.14\|466006\|33\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	466006-466038	33	NZ_CP021372	Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence	283134-283166	8	0.758
NZ_CP022958_1	1.31\|467143\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467143-467176	34	NZ_CP054028	Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence	362600-362633	8	0.765
NZ_CP022958_1	1.31\|467143\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467143-467176	34	NZ_CP021026	Rhizobium sp. TAL182 plasmid pRetTAL182b, complete sequence	18575-18608	8	0.765
NZ_CP022958_1	1.32\|467209\|35\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467209-467243	35	NZ_CP029362	Streptomyces globisporus strain TFH56 plasmid pTFSG1, complete sequence	122741-122775	8	0.771
NZ_CP022958_1	1.32\|467209\|35\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467209-467243	35	NZ_CP032325	Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence	70671-70705	8	0.771
NZ_CP022958_1	1.32\|467209\|35\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467209-467243	35	NZ_CP032342	Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence	417758-417792	8	0.771
NZ_CP022958_1	1.32\|467209\|35\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467209-467243	35	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	375810-375844	8	0.771
NZ_CP022958_1	1.32\|467209\|35\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467209-467243	35	NZ_CP007796	Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence	621155-621189	8	0.771
NZ_CP022958_1	1.32\|467209\|35\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467209-467243	35	NZ_CP033321	Azospirillum brasilense strain Cd plasmid p3, complete sequence	401286-401320	8	0.771
NZ_CP022958_1	1.32\|467209\|35\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467209-467243	35	NZ_CP033315	Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence	458049-458083	8	0.771
NZ_CP022958_1	1.32\|467209\|35\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467209-467243	35	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	656798-656832	8	0.771
NZ_CP022958_1	1.35\|467410\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467410-467443	34	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	601638-601671	8	0.765
NZ_CP022958_1	1.35\|467410\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467410-467443	34	NZ_LR134450	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 8, complete sequence	86750-86783	8	0.765
NZ_CP022958_1	1.5\|465404\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	465404-465437	34	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	1084941-1084974	9	0.735
NZ_CP022958_1	1.24\|466676\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	466676-466709	34	NC_012987	Methylorubrum extorquens AM1 plasmid p1METDI, complete sequence	38055-38088	9	0.735
NZ_CP022958_1	1.24\|466676\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	466676-466709	34	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	322284-322317	9	0.735
NZ_CP022958_1	1.24\|466676\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	466676-466709	34	NZ_CP021026	Rhizobium sp. TAL182 plasmid pRetTAL182b, complete sequence	217692-217725	9	0.735
NZ_CP022958_1	1.24\|466676\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	466676-466709	34	NZ_CP013597	Rhizobium sp. N741 plasmid pRspN741b, complete sequence	251076-251109	9	0.735
NZ_CP022958_1	1.24\|466676\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	466676-466709	34	NZ_CP013501	Rhizobium esperanzae strain N561 plasmid pRspN561a, complete sequence	251442-251475	9	0.735
NZ_CP022958_1	1.24\|466676\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	466676-466709	34	NZ_CP013507	Rhizobium sp. N1341 plasmid pRspN1341b, complete sequence	251076-251109	9	0.735
NZ_CP022958_1	1.24\|466676\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	466676-466709	34	NZ_CP013518	Rhizobium sp. N113 plasmid pRspN113a, complete sequence	251442-251475	9	0.735
NZ_CP022958_1	1.24\|466676\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	466676-466709	34	NZ_CP013491	Rhizobium sp. N6212 plasmid pRspN6212a, complete sequence	251445-251478	9	0.735
NZ_CP022958_1	1.24\|466676\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	466676-466709	34	NZ_CP013513	Rhizobium sp. N1314 plasmid pRspN1314b, complete sequence	272314-272347	9	0.735
NZ_CP022958_1	1.24\|466676\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	466676-466709	34	NZ_CP013496	Rhizobium sp. N621 plasmid pRspN621a, complete sequence	251445-251478	9	0.735
NZ_CP022958_1	1.24\|466676\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	466676-466709	34	NZ_CP013591	Rhizobium sp. N871 plasmid pRspN871a, complete sequence	251445-251478	9	0.735
NZ_CP022958_1	1.24\|466676\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	466676-466709	34	NZ_CP013603	Rhizobium sp. N731 plasmid pRspN731b, complete sequence	272314-272347	9	0.735
NZ_CP022958_1	1.26\|466809\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	466809-466842	34	NC_012987	Methylorubrum extorquens AM1 plasmid p1METDI, complete sequence	38055-38088	9	0.735
NZ_CP022958_1	1.26\|466809\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	466809-466842	34	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	322284-322317	9	0.735
NZ_CP022958_1	1.26\|466809\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	466809-466842	34	NZ_CP021026	Rhizobium sp. TAL182 plasmid pRetTAL182b, complete sequence	217692-217725	9	0.735
NZ_CP022958_1	1.26\|466809\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	466809-466842	34	NZ_CP013597	Rhizobium sp. N741 plasmid pRspN741b, complete sequence	251076-251109	9	0.735
NZ_CP022958_1	1.26\|466809\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	466809-466842	34	NZ_CP013501	Rhizobium esperanzae strain N561 plasmid pRspN561a, complete sequence	251442-251475	9	0.735
NZ_CP022958_1	1.26\|466809\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	466809-466842	34	NZ_CP013507	Rhizobium sp. N1341 plasmid pRspN1341b, complete sequence	251076-251109	9	0.735
NZ_CP022958_1	1.26\|466809\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	466809-466842	34	NZ_CP013518	Rhizobium sp. N113 plasmid pRspN113a, complete sequence	251442-251475	9	0.735
NZ_CP022958_1	1.26\|466809\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	466809-466842	34	NZ_CP013491	Rhizobium sp. N6212 plasmid pRspN6212a, complete sequence	251445-251478	9	0.735
NZ_CP022958_1	1.26\|466809\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	466809-466842	34	NZ_CP013513	Rhizobium sp. N1314 plasmid pRspN1314b, complete sequence	272314-272347	9	0.735
NZ_CP022958_1	1.26\|466809\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	466809-466842	34	NZ_CP013496	Rhizobium sp. N621 plasmid pRspN621a, complete sequence	251445-251478	9	0.735
NZ_CP022958_1	1.26\|466809\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	466809-466842	34	NZ_CP013591	Rhizobium sp. N871 plasmid pRspN871a, complete sequence	251445-251478	9	0.735
NZ_CP022958_1	1.26\|466809\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	466809-466842	34	NZ_CP013603	Rhizobium sp. N731 plasmid pRspN731b, complete sequence	272314-272347	9	0.735
NZ_CP022958_1	1.31\|467143\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467143-467176	34	NZ_CP013524	Rhizobium phaseoli strain R744 plasmid pRphaR744b, complete sequence	18554-18587	9	0.735
NZ_CP022958_1	1.31\|467143\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467143-467176	34	NZ_CP013553	Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence	18584-18617	9	0.735
NZ_CP022958_1	1.31\|467143\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467143-467176	34	NZ_CP013586	Rhizobium phaseoli strain N161 plasmid pRphaN161a, complete sequence	18583-18616	9	0.735
NZ_CP022958_1	1.31\|467143\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467143-467176	34	NZ_CP013559	Rhizobium phaseoli strain N841 plasmid pRphaN841b, complete sequence	18582-18615	9	0.735
NZ_CP022958_1	1.31\|467143\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467143-467176	34	NZ_CP013576	Rhizobium phaseoli strain N671 plasmid pRphaN671b, complete sequence	18577-18610	9	0.735
NZ_CP022958_1	1.31\|467143\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467143-467176	34	NZ_CP013548	Rhizobium phaseoli strain R611 plasmid pRetR611a, complete sequence	18577-18610	9	0.735
NZ_CP022958_1	1.31\|467143\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467143-467176	34	NZ_CP013533	Rhizobium phaseoli strain R650 plasmid pRphaR650a, complete sequence	18577-18610	9	0.735
NZ_CP022958_1	1.31\|467143\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467143-467176	34	NZ_CP013543	Rhizobium phaseoli strain R620 plasmid pRphaR620a, complete sequence	19423-19456	9	0.735
NZ_CP022958_1	1.31\|467143\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467143-467176	34	NZ_CP013564	Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence	18584-18617	9	0.735
NZ_CP022958_1	1.31\|467143\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467143-467176	34	NZ_CP013570	Rhizobium phaseoli strain N771 plasmid pRphaN771b, complete sequence	18577-18610	9	0.735
NZ_CP022958_1	1.31\|467143\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467143-467176	34	KR080200	Mycobacterium phage AlanGrant, complete genome	47541-47574	9	0.735
NZ_CP022958_1	1.31\|467143\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467143-467176	34	KR080194	Mycobacterium phage Vincenzo, complete genome	47541-47574	9	0.735
NZ_CP022958_1	1.32\|467209\|35\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467209-467243	35	NZ_CP038636	Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence	171746-171780	9	0.743
NZ_CP022958_1	1.35\|467410\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467410-467443	34	NZ_CP029832	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence	59684-59717	9	0.735
NZ_CP022958_1	1.39\|467681\|36\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467681-467716	36	CP027479	Pseudomonas koreensis strain P19E3 plasmid p2, complete sequence	247114-247149	9	0.75
NZ_CP022958_1	1.15\|466071\|36\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	466071-466106	36	NZ_CP045301	Azotobacter salinestris strain KACC 13899 plasmid unnamed2, complete sequence	12910-12945	10	0.722
NZ_CP022958_1	1.24\|466676\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	466676-466709	34	NZ_CP022568	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence	102481-102514	10	0.706
NZ_CP022958_1	1.26\|466809\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	466809-466842	34	NZ_CP022568	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence	102481-102514	10	0.706
NZ_CP022958_1	1.31\|467143\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467143-467176	34	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	1527440-1527473	10	0.706
NZ_CP022958_1	1.31\|467143\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467143-467176	34	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	1398947-1398980	10	0.706
NZ_CP022958_1	1.31\|467143\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467143-467176	34	NZ_CP023000	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence	1020152-1020185	10	0.706
NZ_CP022958_1	1.31\|467143\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467143-467176	34	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	1512013-1512046	10	0.706
NZ_CP022958_1	1.31\|467143\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467143-467176	34	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	475143-475176	10	0.706
NZ_CP022958_1	1.31\|467143\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467143-467176	34	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	689667-689700	10	0.706
NZ_CP022958_1	1.31\|467143\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467143-467176	34	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	475159-475192	10	0.706
NZ_CP022958_1	1.31\|467143\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467143-467176	34	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	474900-474933	10	0.706
NZ_CP022958_1	1.31\|467143\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467143-467176	34	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	474896-474929	10	0.706
NZ_CP022958_1	1.28\|466942\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	466942-466975	34	NZ_CP026974	Achromobacter insolitus strain FDAARGOS_88 plasmid unnamed1, complete sequence	334933-334966	11	0.676
NZ_CP022958_1	1.32\|467209\|35\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467209-467243	35	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	241917-241951	11	0.686
NZ_CP022958_1	1.35\|467410\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467410-467443	34	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	767033-767066	11	0.676
NZ_CP022958_1	1.35\|467410\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467410-467443	34	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	122788-122821	11	0.676
NZ_CP022958_1	1.35\|467410\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467410-467443	34	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	340210-340243	11	0.676
NZ_CP022958_1	1.35\|467410\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467410-467443	34	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	617615-617648	11	0.676
NZ_CP022958_1	1.35\|467410\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467410-467443	34	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	410750-410783	11	0.676
NZ_CP022958_1	1.35\|467410\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467410-467443	34	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	430988-431021	11	0.676
NZ_CP022958_1	1.35\|467410\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467410-467443	34	NZ_CP051294	Mesorhizobium sp. NZP2077 plasmid pMSNZP2077A, complete sequence	88036-88069	11	0.676
NZ_CP022958_1	1.35\|467410\|34\|NZ_CP022958\|PILER-CR,CRISPRCasFinder,CRT	467410-467443	34	NZ_CP033363	Mesorhizobium sp. NZP2077 plasmid pMSNZP2077NSa, complete sequence	88036-88069	11	0.676

1. spacer 1.32|467209|35|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT969519 (Pseudomonas aeruginosa isolate RW109 genome assembly, plasmid: RW109 plasmid 1) position: , mismatch: 7, identity: 0.8

cgcagcggcatgaccgccgccgagctcgccatggc	CRISPR spacer
cgcccggacgtggccgccgccgagcgcgccatggc	Protospacer
***   *.*.**.************ *********

2. spacer 1.32|467209|35|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.8

cgcagcggcatgaccgccgccgagctcgccatggc	CRISPR spacer
cgccccgatgtggccgccgccgagcgcgccatggc	Protospacer
***  **...**.************ *********

3. spacer 1.32|467209|35|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.8

cgcagcggcatgaccgccgccgagctcgccatggc	CRISPR spacer
cgccccgatgtggccgccgccgagcgcgccatggc	Protospacer
***  **...**.************ *********

4. spacer 1.32|467209|35|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.8

cgcagcggcatgaccgccgccgagctcgccatggc	CRISPR spacer
cgccccgatgtggccgccgccgagcgcgccatggc	Protospacer
***  **...**.************ *********

5. spacer 1.32|467209|35|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.8

cgcagcggcatgaccgccgccgagctcgccatggc	CRISPR spacer
cgccccgatgtggccgccgccgagcgcgccatggc	Protospacer
***  **...**.************ *********

6. spacer 1.32|467209|35|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.8

cgcagcggcatgaccgccgccgagctcgccatggc	CRISPR spacer
cgccccgatgtggccgccgccgagcgcgccatggc	Protospacer
***  **...**.************ *********

7. spacer 1.32|467209|35|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.8

cgcagcggcatgaccgccgccgagctcgccatggc	CRISPR spacer
cgccccgatgtggccgccgccgagcgcgccatggc	Protospacer
***  **...**.************ *********

8. spacer 1.34|467344|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to KX557288 (Rhodococcus phage ChewyVIII, complete genome) position: , mismatch: 7, identity: 0.794

acccg---ctacctcgactccccggaactgctcggcc	CRISPR spacer
---cggatcgacatcgactccccggacctgctcggac	Protospacer
   **   * ** ************* ******** *

9. spacer 1.8|465605|35|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049750 (Rhodococcus fascians A21d2 plasmid unnamed1) position: , mismatch: 8, identity: 0.771

gaccactgggtgaaagagcagctgcgggtgcgcca	CRISPR spacer
cccctcgcggtgcaagagcagctgccggtgcgcga	Protospacer
  ** *  **** ************ ******* *

10. spacer 1.14|466006|33|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021372 (Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence) position: , mismatch: 8, identity: 0.758

atcgccaaggctggcgggctgttc----atcctgctg	CRISPR spacer
atcgccaagccgggcgggctgttcgaggatacc----	Protospacer
********* * ************    ** *.

11. spacer 1.31|467143|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 8, identity: 0.765

gttagcaacgtgctgaccgtgcgcatcaacggga	CRISPR spacer
gtcgtcaacctgctgaccgtgcgcatcaaccacc	Protospacer
**.. **** ******************** .

12. spacer 1.31|467143|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021026 (Rhizobium sp. TAL182 plasmid pRetTAL182b, complete sequence) position: , mismatch: 8, identity: 0.765

gttagcaacgtgctgaccgtgcgcatcaacggga	CRISPR spacer
gtcgtcaacctgctgaccgtgcgcatcaaccatc	Protospacer
**.. **** ******************** .

13. spacer 1.32|467209|35|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029362 (Streptomyces globisporus strain TFH56 plasmid pTFSG1, complete sequence) position: , mismatch: 8, identity: 0.771

cgcagcggcatgaccgccgccgagctcg-ccatggc	CRISPR spacer
atctacggcatgcccgccgccgagctcgcccaccg-	Protospacer
  * .******* *************** ***. *

14. spacer 1.32|467209|35|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032325 (Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.771

cgcagcggcatgaccgccgccgagctcgccatggc-----	CRISPR spacer
cgcaccggcctgaccgccgccgag-----cagggcctcta	Protospacer
**** **** **************     ** ***

15. spacer 1.32|467209|35|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032342 (Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.771

cgcagcggcatgaccgccgccgagctcgccatggc-----	CRISPR spacer
cgcaccggcctgaccgccgccgag-----cagggcctcta	Protospacer
**** **** **************     ** ***

16. spacer 1.32|467209|35|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 8, identity: 0.771

cgcagcggcatgaccgccgccgagctcgccatggc-----	CRISPR spacer
cgcaccggcctgaccgccgccgag-----cagggcctcta	Protospacer
**** **** **************     ** ***

17. spacer 1.32|467209|35|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 8, identity: 0.771

cgcagcggcatgaccgccgccgagctcgccatggc-----	CRISPR spacer
cgcaccggcctgaccgccgccgag-----cagggcctcta	Protospacer
**** **** **************     ** ***

18. spacer 1.32|467209|35|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033321 (Azospirillum brasilense strain Cd plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.771

cgcagcggcatgaccgccgccgagctcgccatggc-----	CRISPR spacer
cgcaccggcctgaccgccgccgag-----cagggcctcta	Protospacer
**** **** **************     ** ***

19. spacer 1.32|467209|35|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033315 (Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.771

cgcagcggcatgaccgccgccgagctcgccatggc-----	CRISPR spacer
cgcaccggcctgaccgccgccgag-----cagggcctcta	Protospacer
**** **** **************     ** ***

20. spacer 1.32|467209|35|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.771

cgcagcggcatgaccgccgccgagc----tcgccatggc	CRISPR spacer
cgcaccggcctgaccgccgccgagcagggtctcta----	Protospacer
**** **** ***************    ** *.*

21. spacer 1.35|467410|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.765

aatttcacg-----cagccgcaccgccgcctgcggatcg	CRISPR spacer
-----cgcgcgggccagccgcagcgcctcctgcggatcg	Protospacer
     *.**     ******** **** ***********

22. spacer 1.35|467410|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134450 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 8, complete sequence) position: , mismatch: 8, identity: 0.765

aatttcacg-----cagccgcaccgccgcctgcggatcg	CRISPR spacer
-----cacgagagagagcgccaccgccgcctgcggatcg	Protospacer
     ****      ***  *******************

23. spacer 1.5|465404|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 9, identity: 0.735

aggtcaaggactggtacgcggtcgccgactccat	CRISPR spacer
cgcgcaaggactggtatgcgctcgccgacgcgcc	Protospacer
 *  ************.*** ******** *  .

24. spacer 1.24|466676|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NC_012987 (Methylorubrum extorquens AM1 plasmid p1METDI, complete sequence) position: , mismatch: 9, identity: 0.735

ctcgcgggtcgggcgccaccaggcgccctcgcga	CRISPR spacer
ctcgcggatcgggcgccaccacgcctcgttgtcg	Protospacer
*******.************* ** .* *.*. .

25. spacer 1.24|466676|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 9, identity: 0.735

ctcgcgggtcgggcgccaccaggcgccctcgcga	CRISPR spacer
cgcgcaggtcgggcgccagcaggcgctgcgtcca	Protospacer
* ***.************ *******. .  * *

26. spacer 1.24|466676|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021026 (Rhizobium sp. TAL182 plasmid pRetTAL182b, complete sequence) position: , mismatch: 9, identity: 0.735

ctcgcgggtcgggcgccaccaggcgccctcgcga	CRISPR spacer
ctcttccatcgagcgccaccaggcgtcctcgcag	Protospacer
*** .  .***.*************.******..

27. spacer 1.24|466676|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013597 (Rhizobium sp. N741 plasmid pRspN741b, complete sequence) position: , mismatch: 9, identity: 0.735

ctcgcgggtcgggcgccaccaggcgccctcgcga	CRISPR spacer
ctcttccatcgagcgccaccaggcgtcctcgcag	Protospacer
*** .  .***.*************.******..

28. spacer 1.24|466676|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013501 (Rhizobium esperanzae strain N561 plasmid pRspN561a, complete sequence) position: , mismatch: 9, identity: 0.735

ctcgcgggtcgggcgccaccaggcgccctcgcga	CRISPR spacer
ctcttccatcgagcgccaccaggcgtcctcgcag	Protospacer
*** .  .***.*************.******..

29. spacer 1.24|466676|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013507 (Rhizobium sp. N1341 plasmid pRspN1341b, complete sequence) position: , mismatch: 9, identity: 0.735

ctcgcgggtcgggcgccaccaggcgccctcgcga	CRISPR spacer
ctcttccatcgagcgccaccaggcgtcctcgcag	Protospacer
*** .  .***.*************.******..

30. spacer 1.24|466676|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013518 (Rhizobium sp. N113 plasmid pRspN113a, complete sequence) position: , mismatch: 9, identity: 0.735

ctcgcgggtcgggcgccaccaggcgccctcgcga	CRISPR spacer
ctcttccatcgagcgccaccaggcgtcctcgcag	Protospacer
*** .  .***.*************.******..

31. spacer 1.24|466676|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013491 (Rhizobium sp. N6212 plasmid pRspN6212a, complete sequence) position: , mismatch: 9, identity: 0.735

ctcgcgggtcgggcgccaccaggcgccctcgcga	CRISPR spacer
ctcttccatcgagcgccaccaggcgtcctcgcag	Protospacer
*** .  .***.*************.******..

32. spacer 1.24|466676|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013513 (Rhizobium sp. N1314 plasmid pRspN1314b, complete sequence) position: , mismatch: 9, identity: 0.735

ctcgcgggtcgggcgccaccaggcgccctcgcga	CRISPR spacer
ctcttccatcgagcgccaccaggcgtcctcgcag	Protospacer
*** .  .***.*************.******..

33. spacer 1.24|466676|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013496 (Rhizobium sp. N621 plasmid pRspN621a, complete sequence) position: , mismatch: 9, identity: 0.735

ctcgcgggtcgggcgccaccaggcgccctcgcga	CRISPR spacer
ctcttccatcgagcgccaccaggcgtcctcgcag	Protospacer
*** .  .***.*************.******..

34. spacer 1.24|466676|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013591 (Rhizobium sp. N871 plasmid pRspN871a, complete sequence) position: , mismatch: 9, identity: 0.735

ctcgcgggtcgggcgccaccaggcgccctcgcga	CRISPR spacer
ctcttccatcgagcgccaccaggcgtcctcgcag	Protospacer
*** .  .***.*************.******..

35. spacer 1.24|466676|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013603 (Rhizobium sp. N731 plasmid pRspN731b, complete sequence) position: , mismatch: 9, identity: 0.735

ctcgcgggtcgggcgccaccaggcgccctcgcga	CRISPR spacer
ctcttccatcgagcgccaccaggcgtcctcgcag	Protospacer
*** .  .***.*************.******..

36. spacer 1.26|466809|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NC_012987 (Methylorubrum extorquens AM1 plasmid p1METDI, complete sequence) position: , mismatch: 9, identity: 0.735

ctcgcgggtcgggcgccaccaggcgccctcgcga	CRISPR spacer
ctcgcggatcgggcgccaccacgcctcgttgtcg	Protospacer
*******.************* ** .* *.*. .

37. spacer 1.26|466809|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 9, identity: 0.735

ctcgcgggtcgggcgccaccaggcgccctcgcga	CRISPR spacer
cgcgcaggtcgggcgccagcaggcgctgcgtcca	Protospacer
* ***.************ *******. .  * *

38. spacer 1.26|466809|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021026 (Rhizobium sp. TAL182 plasmid pRetTAL182b, complete sequence) position: , mismatch: 9, identity: 0.735

ctcgcgggtcgggcgccaccaggcgccctcgcga	CRISPR spacer
ctcttccatcgagcgccaccaggcgtcctcgcag	Protospacer
*** .  .***.*************.******..

39. spacer 1.26|466809|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013597 (Rhizobium sp. N741 plasmid pRspN741b, complete sequence) position: , mismatch: 9, identity: 0.735

ctcgcgggtcgggcgccaccaggcgccctcgcga	CRISPR spacer
ctcttccatcgagcgccaccaggcgtcctcgcag	Protospacer
*** .  .***.*************.******..

40. spacer 1.26|466809|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013501 (Rhizobium esperanzae strain N561 plasmid pRspN561a, complete sequence) position: , mismatch: 9, identity: 0.735

ctcgcgggtcgggcgccaccaggcgccctcgcga	CRISPR spacer
ctcttccatcgagcgccaccaggcgtcctcgcag	Protospacer
*** .  .***.*************.******..

41. spacer 1.26|466809|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013507 (Rhizobium sp. N1341 plasmid pRspN1341b, complete sequence) position: , mismatch: 9, identity: 0.735

ctcgcgggtcgggcgccaccaggcgccctcgcga	CRISPR spacer
ctcttccatcgagcgccaccaggcgtcctcgcag	Protospacer
*** .  .***.*************.******..

42. spacer 1.26|466809|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013518 (Rhizobium sp. N113 plasmid pRspN113a, complete sequence) position: , mismatch: 9, identity: 0.735

ctcgcgggtcgggcgccaccaggcgccctcgcga	CRISPR spacer
ctcttccatcgagcgccaccaggcgtcctcgcag	Protospacer
*** .  .***.*************.******..

43. spacer 1.26|466809|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013491 (Rhizobium sp. N6212 plasmid pRspN6212a, complete sequence) position: , mismatch: 9, identity: 0.735

ctcgcgggtcgggcgccaccaggcgccctcgcga	CRISPR spacer
ctcttccatcgagcgccaccaggcgtcctcgcag	Protospacer
*** .  .***.*************.******..

44. spacer 1.26|466809|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013513 (Rhizobium sp. N1314 plasmid pRspN1314b, complete sequence) position: , mismatch: 9, identity: 0.735

ctcgcgggtcgggcgccaccaggcgccctcgcga	CRISPR spacer
ctcttccatcgagcgccaccaggcgtcctcgcag	Protospacer
*** .  .***.*************.******..

45. spacer 1.26|466809|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013496 (Rhizobium sp. N621 plasmid pRspN621a, complete sequence) position: , mismatch: 9, identity: 0.735

ctcgcgggtcgggcgccaccaggcgccctcgcga	CRISPR spacer
ctcttccatcgagcgccaccaggcgtcctcgcag	Protospacer
*** .  .***.*************.******..

46. spacer 1.26|466809|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013591 (Rhizobium sp. N871 plasmid pRspN871a, complete sequence) position: , mismatch: 9, identity: 0.735

ctcgcgggtcgggcgccaccaggcgccctcgcga	CRISPR spacer
ctcttccatcgagcgccaccaggcgtcctcgcag	Protospacer
*** .  .***.*************.******..

47. spacer 1.26|466809|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013603 (Rhizobium sp. N731 plasmid pRspN731b, complete sequence) position: , mismatch: 9, identity: 0.735

ctcgcgggtcgggcgccaccaggcgccctcgcga	CRISPR spacer
ctcttccatcgagcgccaccaggcgtcctcgcag	Protospacer
*** .  .***.*************.******..

48. spacer 1.31|467143|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013524 (Rhizobium phaseoli strain R744 plasmid pRphaR744b, complete sequence) position: , mismatch: 9, identity: 0.735

gttagcaacgtgctgaccgtgcgcatcaacggga	CRISPR spacer
gtcgtcaacctgctcaccgtgcgcatcaaccatc	Protospacer
**.. **** **** *************** .

49. spacer 1.31|467143|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013553 (Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence) position: , mismatch: 9, identity: 0.735

gttagcaacgtgctgaccgtgcgcatcaacggga	CRISPR spacer
gtcgtcaacctgctcaccgtgcgcatcaaccatc	Protospacer
**.. **** **** *************** .

50. spacer 1.31|467143|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013586 (Rhizobium phaseoli strain N161 plasmid pRphaN161a, complete sequence) position: , mismatch: 9, identity: 0.735

gttagcaacgtgctgaccgtgcgcatcaacggga	CRISPR spacer
gtcgtcaacctgctcaccgtgcgcatcaaccatc	Protospacer
**.. **** **** *************** .

51. spacer 1.31|467143|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013559 (Rhizobium phaseoli strain N841 plasmid pRphaN841b, complete sequence) position: , mismatch: 9, identity: 0.735

gttagcaacgtgctgaccgtgcgcatcaacggga	CRISPR spacer
gtcgtcaacctgctcaccgtgcgcatcaaccatc	Protospacer
**.. **** **** *************** .

52. spacer 1.31|467143|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013576 (Rhizobium phaseoli strain N671 plasmid pRphaN671b, complete sequence) position: , mismatch: 9, identity: 0.735

gttagcaacgtgctgaccgtgcgcatcaacggga	CRISPR spacer
gtcgtcaacctgctcaccgtgcgcatcaaccatc	Protospacer
**.. **** **** *************** .

53. spacer 1.31|467143|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013548 (Rhizobium phaseoli strain R611 plasmid pRetR611a, complete sequence) position: , mismatch: 9, identity: 0.735

gttagcaacgtgctgaccgtgcgcatcaacggga	CRISPR spacer
gtcgtcaacctgctcaccgtgcgcatcaaccatc	Protospacer
**.. **** **** *************** .

54. spacer 1.31|467143|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013533 (Rhizobium phaseoli strain R650 plasmid pRphaR650a, complete sequence) position: , mismatch: 9, identity: 0.735

gttagcaacgtgctgaccgtgcgcatcaacggga	CRISPR spacer
gtcgtcaacctgctcaccgtgcgcatcaaccatc	Protospacer
**.. **** **** *************** .

55. spacer 1.31|467143|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013543 (Rhizobium phaseoli strain R620 plasmid pRphaR620a, complete sequence) position: , mismatch: 9, identity: 0.735

gttagcaacgtgctgaccgtgcgcatcaacggga	CRISPR spacer
gtcgtcaacctgctcaccgtgcgcatcaaccatc	Protospacer
**.. **** **** *************** .

56. spacer 1.31|467143|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013564 (Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence) position: , mismatch: 9, identity: 0.735

gttagcaacgtgctgaccgtgcgcatcaacggga	CRISPR spacer
gtcgtcaacctgctcaccgtgcgcatcaaccatc	Protospacer
**.. **** **** *************** .

57. spacer 1.31|467143|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013570 (Rhizobium phaseoli strain N771 plasmid pRphaN771b, complete sequence) position: , mismatch: 9, identity: 0.735

gttagcaacgtgctgaccgtgcgcatcaacggga	CRISPR spacer
gtcgtcaacctgctcaccgtgcgcatcaaccatc	Protospacer
**.. **** **** *************** .

58. spacer 1.31|467143|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to KR080200 (Mycobacterium phage AlanGrant, complete genome) position: , mismatch: 9, identity: 0.735

gttagcaacgt--gctgaccgtgcgcatcaacggga	CRISPR spacer
--cagccgcgcgggctgaccgtgcgcatcaagggcc	Protospacer
  .*** .**.  ****************** **

59. spacer 1.31|467143|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to KR080194 (Mycobacterium phage Vincenzo, complete genome) position: , mismatch: 9, identity: 0.735

gttagcaacgt--gctgaccgtgcgcatcaacggga	CRISPR spacer
--cagccgcgcgggctgaccgtgcgcatcaagggcc	Protospacer
  .*** .**.  ****************** **

60. spacer 1.32|467209|35|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038636 (Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

cgcagcggcatgaccgccgccgagctcgccatggc	CRISPR spacer
gccgcctccatgaccgccacggagctcgccatgga	Protospacer
  *. *  **********.* *************

61. spacer 1.35|467410|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029832 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.735

aatttcacgcagccgcaccgccgcctgcggatcg	CRISPR spacer
gagccagcacagccgcaccgccgcctcaggatcg	Protospacer
.* .. .*.*****************  ******

62. spacer 1.39|467681|36|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to CP027479 (Pseudomonas koreensis strain P19E3 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.75

cagcacgcggatgggcgcgtattccaggtggttttc	CRISPR spacer
ctggtagcggatgggcgcgttgtccaggtggtcgac	Protospacer
* *   **************  **********.  *

63. spacer 1.15|466071|36|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045301 (Azotobacter salinestris strain KACC 13899 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.722

tacgaatacgggttcgaactcggcgacggctgcggc	CRISPR spacer
cagcaggtcgcgctcgaactcggcgacggctgcgat	Protospacer
.*  *.  ** *.*********************..

64. spacer 1.24|466676|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 10, identity: 0.706

ctcgcgggtcgggcgccaccaggcgccctcgcga	CRISPR spacer
ttcctccatcgagcgccaccaggcgtcctcgcag	Protospacer
.** .  .***.*************.******..

65. spacer 1.26|466809|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 10, identity: 0.706

ctcgcgggtcgggcgccaccaggcgccctcgcga	CRISPR spacer
ttcctccatcgagcgccaccaggcgtcctcgcag	Protospacer
.** .  .***.*************.******..

66. spacer 1.31|467143|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

-----gttagcaacgtgctgaccgtgcgcatcaacggga	CRISPR spacer
ccccagtcg-----gtgttgaccgtgcgcatcatcgggc	Protospacer
     **..     ***.*************** ****

67. spacer 1.31|467143|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

-----gttagcaacgtgctgaccgtgcgcatcaacggga	CRISPR spacer
ccccagtcg-----gtgttgaccgtgcgcatcatcgggc	Protospacer
     **..     ***.*************** ****

68. spacer 1.31|467143|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023000 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence) position: , mismatch: 10, identity: 0.706

gttagcaacgtgctgaccgtgcgcatcaacggga	CRISPR spacer
gtcgtcaaccttctgaccgtgcgcatcaatcacc	Protospacer
**.. **** * *****************. .

69. spacer 1.31|467143|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 10, identity: 0.706

-----gttagcaacgtgctgaccgtgcgcatcaacggga	CRISPR spacer
ccccagtcg-----gtgttgaccgtgcgcatcatcgggc	Protospacer
     **..     ***.*************** ****

70. spacer 1.31|467143|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

-----gttagcaacgtgctgaccgtgcgcatcaacggga	CRISPR spacer
ccccagtcg-----gtgttgaccgtgcgcatcatcgggc	Protospacer
     **..     ***.*************** ****

71. spacer 1.31|467143|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 10, identity: 0.706

-----gttagcaacgtgctgaccgtgcgcatcaacggga	CRISPR spacer
ccccagtcg-----gtgttgaccgtgcgcatcatcgggc	Protospacer
     **..     ***.*************** ****

72. spacer 1.31|467143|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

-----gttagcaacgtgctgaccgtgcgcatcaacggga	CRISPR spacer
ccccagtcg-----gtgttgaccgtgcgcatcatcgggc	Protospacer
     **..     ***.*************** ****

73. spacer 1.31|467143|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 10, identity: 0.706

-----gttagcaacgtgctgaccgtgcgcatcaacggga	CRISPR spacer
ccccagtcg-----gtgttgaccgtgcgcatcatcgggc	Protospacer
     **..     ***.*************** ****

74. spacer 1.31|467143|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

-----gttagcaacgtgctgaccgtgcgcatcaacggga	CRISPR spacer
ccccagtcg-----gtgttgaccgtgcgcatcatcgggc	Protospacer
     **..     ***.*************** ****

75. spacer 1.28|466942|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026974 (Achromobacter insolitus strain FDAARGOS_88 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

caaggtggcgtgatggacttccgccgggtctatg	CRISPR spacer
tgccaaggcctgatggactttcgccgggtcgagc	Protospacer
..  . *** **********.********* *

76. spacer 1.32|467209|35|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 11, identity: 0.686

cgcagcggcatgaccgccgccgagctcgccatggc	CRISPR spacer
gctgtcggcatgaccgccgccgccctcgccgcgaa	Protospacer
  .. *****************  ******..*.

77. spacer 1.35|467410|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 11, identity: 0.676

aatttcacgcagccgcaccgccgcctgcggatcg	CRISPR spacer
cgcccggaacagccgcaccgccgccgccggatcg	Protospacer
 .... . .****************  *******

78. spacer 1.35|467410|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 11, identity: 0.676

aatttcacgcagccgcaccgccgcctgcggatcg	CRISPR spacer
cgcgcggaacagccgcaccgccgccgccggatcg	Protospacer
 .. . . .****************  *******

79. spacer 1.35|467410|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 11, identity: 0.676

aatttcacgcagccgcaccgccgcctgcggatcg	CRISPR spacer
cgcccggaacagccgcaccgccgccgccggatcg	Protospacer
 .... . .****************  *******

80. spacer 1.35|467410|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 11, identity: 0.676

aatttcacgcagccgcaccgccgcctgcggatcg	CRISPR spacer
cgcccggaacagccgcaccgccgccgccggatcg	Protospacer
 .... . .****************  *******

81. spacer 1.35|467410|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 11, identity: 0.676

aatttcacgcagccgcaccgccgcctgcggatcg	CRISPR spacer
cgcccggaacagccgcaccgccgccgccggatcg	Protospacer
 .... . .****************  *******

82. spacer 1.35|467410|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 11, identity: 0.676

aatttcacgcagccgcaccgccgcctgcggatcg	CRISPR spacer
cgcccggaacagccgcaccgccgccgccggatcg	Protospacer
 .... . .****************  *******

83. spacer 1.35|467410|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051294 (Mesorhizobium sp. NZP2077 plasmid pMSNZP2077A, complete sequence) position: , mismatch: 11, identity: 0.676

aatttcacgcagccgcaccgccgcctgcggatcg	CRISPR spacer
ggaccgacgcagccgctccgccgccttcggcggg	Protospacer
.. .. ********** ********* ***   *

84. spacer 1.35|467410|34|NZ_CP022958|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033363 (Mesorhizobium sp. NZP2077 plasmid pMSNZP2077NSa, complete sequence) position: , mismatch: 11, identity: 0.676

aatttcacgcagccgcaccgccgcctgcggatcg	CRISPR spacer
ggaccgacgcagccgctccgccgccttcggcggg	Protospacer
.. .. ********** ********* ***   *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

139345 : 151247

Pseudomonas_phage(33.33%)

integrase,transposase

attL 135918:135932|attR 145834:145848

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
135918:135932	attL	NA	NA	NA	NA
WP_141016244.1\|139345_139963_-	DUF3164 family protein	A0A0A1IVF8	Pseudomonas_phage	3.8e-48	47.3
WP_141016245.1\|139959_140379_-	hypothetical protein	NA	NA	NA	NA
WP_141016246.1\|140375_140693_-	hypothetical protein	NA	NA	NA	NA
WP_141020519.1\|140695_141580_-	AAA family ATPase	A4JWN1	Burkholderia_virus	5.2e-75	51.8
WP_141016247.1\|141915_142164_-	hypothetical protein	NA	NA	NA	NA
WP_141020520.1\|142262_144023_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q5ZR04	Pseudomonas_phage	6.9e-71	33.6
WP_141016248.1\|145035_145347_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_141016249.1\|145336_145567_-	hypothetical protein	NA	NA	NA	NA
WP_141016250.1\|145566_146031_-	hypothetical protein	A4JWN5	Burkholderia_virus	7.0e-31	47.1
145834:145848	attR	NA	NA	NA	NA
WP_141016251.1\|146140_146380_+	hypothetical protein	NA	NA	NA	NA
WP_141016252.1\|146554_146800_-	DNA-binding protein	Q6QID3	Burkholderia_phage	8.2e-31	86.4
WP_141016253.1\|146930_147410_+	helix-turn-helix domain-containing protein	A4JWN8	Burkholderia_virus	1.8e-10	48.6
WP_141016254.1\|147462_147705_+	hypothetical protein	NA	NA	NA	NA
WP_141016255.1\|148132_148615_+	DUF4124 domain-containing protein	NA	NA	NA	NA
WP_141016256.1\|148692_149256_+	hypothetical protein	F6MIJ9	Haemophilus_phage	2.1e-29	41.5
WP_141016257.1\|149245_149599_+	hypothetical protein	NA	NA	NA	NA
WP_141016258.1\|149765_149987_+	hypothetical protein	NA	NA	NA	NA
WP_141016259.1\|149983_150556_+	hypothetical protein	NA	NA	NA	NA
WP_141016260.1\|150552_150939_+	hypothetical protein	Q5ZQY8	Pseudomonas_phage	9.3e-21	46.0
WP_168225024.1\|150932_151247_+	hypothetical protein	Q6QIC3	Burkholderia_phage	1.5e-40	74.3

DBSCAN-SWA_2

400134 : 407774

Staphylococcus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141020531.1\|400134_401928_+	ATP-binding cassette domain-containing protein	A0A285PWH2	Cedratvirus	6.3e-11	28.3
WP_141016481.1\|401931_402693_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	3.2e-09	23.9
WP_141016482.1\|402948_403224_+	HU family DNA-binding protein	A7KV42	Bacillus_phage	5.4e-15	50.6
WP_141016483.1\|403676_404993_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	3.8e-50	32.7
WP_141016484.1\|405078_405546_-	transcription antitermination factor NusB	NA	NA	NA	NA
WP_141016485.1\|405542_406013_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2I2L4Y7	Orpheovirus	1.7e-13	36.4
WP_141016486.1\|406071_407163_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	1.4e-50	37.2
WP_141016487.1\|407159_407774_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	8.4e-24	37.1

DBSCAN-SWA_3

1666607 : 1700750

Leptospira_phage(33.33%)

plate,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141017523.1\|1666607_1667642_-\|transposase	IS630 family transposase	S5VXX4	Leptospira_phage	1.5e-57	36.6
WP_141017524.1\|1667824_1668121_-	hypothetical protein	NA	NA	NA	NA
WP_141017525.1\|1668792_1670007_+	MFS transporter	NA	NA	NA	NA
WP_141017526.1\|1670132_1671815_+	protein kinase	A0A1D8QL16	Trichoplusia_ni_granulovirus	2.5e-09	34.2
WP_141017527.1\|1671836_1672754_-	hypothetical protein	NA	NA	NA	NA
WP_141017528.1\|1672991_1673444_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_141017529.1\|1673512_1675015_-	CHAD domain-containing protein	NA	NA	NA	NA
WP_141017530.1\|1675115_1677797_-	bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA	NA	NA	NA
WP_141017531.1\|1677947_1681865_+	TIGR02099 family protein	NA	NA	NA	NA
WP_141017532.1\|1681861_1682722_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_141017533.1\|1682786_1684232_+\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_141017534.1\|1684239_1684686_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_141017535.1\|1684709_1685402_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_141017536.1\|1685430_1686780_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_168224918.1\|1686792_1687440_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_141017538.1\|1687512_1688286_+	M15 family metallopeptidase	NA	NA	NA	NA
WP_141017539.1\|1688282_1691942_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_141017540.1\|1692013_1692529_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_141017541.1\|1692525_1694019_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_141017542.1\|1694074_1694572_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_168224919.1\|1694568_1695063_+	OmpA family protein	NA	NA	NA	NA
WP_141017544.1\|1695124_1697854_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	6.9e-86	33.5
WP_141017545.1\|1697877_1699740_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_141017546.1\|1699703_1700750_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_4

2194104 : 2227838

Stenotrophomonas_phage(25.0%)

integrase,tail

attL 2223762:2223779|attR 2237053:2237070

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_168224929.1\|2194104_2195754_-\|tail	phage tail protein	NA	NA	NA	NA
WP_141017947.1\|2197771_2198800_+	hypothetical protein	NA	NA	NA	NA
WP_141020649.1\|2198796_2199981_-	hypothetical protein	NA	NA	NA	NA
WP_141017948.1\|2199980_2200397_-	GPW/gp25 family protein	NA	NA	NA	NA
WP_141017949.1\|2200393_2201212_-\|tail	phage tail protein	NA	NA	NA	NA
WP_141017950.1\|2201208_2202426_-	hypothetical protein	NA	NA	NA	NA
WP_141017951.1\|2202778_2203426_-	hypothetical protein	NA	NA	NA	NA
WP_141017952.1\|2203512_2203773_-	hypothetical protein	NA	NA	NA	NA
WP_141017953.1\|2203765_2205115_-	AAA family ATPase	A0A2D2W2A9	Stenotrophomonas_phage	2.9e-08	38.9
WP_141017954.1\|2205111_2206131_-	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_141017955.1\|2206134_2206362_-	hypothetical protein	NA	NA	NA	NA
WP_141017956.1\|2207083_2207908_-	hypothetical protein	NA	NA	NA	NA
WP_141017957.1\|2207918_2208428_-\|tail	phage tail protein	NA	NA	NA	NA
WP_141017958.1\|2208459_2210007_-\|tail	phage tail sheath family protein	J9PVC2	Bacillus_phage	1.6e-58	31.7
WP_141017959.1\|2210084_2210486_-	hypothetical protein	NA	NA	NA	NA
WP_141017960.1\|2210710_2211283_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_141017961.1\|2211884_2213759_+\|integrase	integrase arm-type DNA-binding domain-containing protein	Q5QF66	Pseudomonas_virus	5.2e-109	51.1
WP_141017962.1\|2214533_2214833_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_141017963.1\|2215018_2216104_+	hypothetical protein	NA	NA	NA	NA
WP_141017964.1\|2216103_2217000_+	antitoxin	NA	NA	NA	NA
WP_141017965.1\|2217008_2220026_+	DEAD/DEAH box helicase	M1H1D9	Paramecium_bursaria_Chlorella_virus	4.1e-23	27.7
WP_141017966.1\|2220038_2221982_+	NTPase KAP	NA	NA	NA	NA
WP_141017967.1\|2221981_2222866_+	hypothetical protein	NA	NA	NA	NA
WP_141017968.1\|2222862_2224230_+	hypothetical protein	NA	NA	NA	NA
2223762:2223779	attL	NA	NA	NA	NA
WP_141017969.1\|2224243_2224996_+	TatD family deoxyribonuclease	NA	NA	NA	NA
WP_141017970.1\|2225035_2226862_-	DNA-binding domain-containing protein	NA	NA	NA	NA
WP_141017971.1\|2227205_2227838_+\|integrase	integrase	NA	NA	NA	NA
2237053:2237070	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2239347 : 2296957

Stx2-converting_phage(37.5%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141017523.1\|2239347_2240382_-\|transposase	IS630 family transposase	S5VXX4	Leptospira_phage	1.5e-57	36.6
WP_141017983.1\|2240411_2241080_-	DUF4297 domain-containing protein	NA	NA	NA	NA
WP_141017984.1\|2241467_2242751_-	hypothetical protein	NA	NA	NA	NA
WP_141017985.1\|2242722_2242929_-	hypothetical protein	NA	NA	NA	NA
WP_141017986.1\|2242972_2243296_-	hypothetical protein	NA	NA	NA	NA
WP_141017987.1\|2243346_2244222_-	hypothetical protein	NA	NA	NA	NA
WP_141017988.1\|2245549_2247763_-	recombinase family protein	NA	NA	NA	NA
WP_168225034.1\|2247762_2248326_-	hypothetical protein	NA	NA	NA	NA
WP_141017989.1\|2249579_2250782_+	DUF4297 domain-containing protein	NA	NA	NA	NA
WP_141017990.1\|2250778_2252503_+	hypothetical protein	NA	NA	NA	NA
WP_141017991.1\|2252719_2254165_+\|protease	trypsin-like serine protease	NA	NA	NA	NA
WP_141017992.1\|2254422_2254917_-	DNA repair protein RadC	NA	NA	NA	NA
WP_141017993.1\|2255251_2258188_-	conjugative transfer ATPase	NA	NA	NA	NA
WP_141017994.1\|2258187_2258622_-	TIGR03751 family conjugal transfer lipoprotein	NA	NA	NA	NA
WP_141017995.1\|2258602_2260039_-	TIGR03752 family integrating conjugative element protein	NA	NA	NA	NA
WP_141017996.1\|2260028_2260964_-	TIGR03749 family integrating conjugative element protein	NA	NA	NA	NA
WP_141017997.1\|2260960_2261653_-	TIGR03746 family integrating conjugative element protein	NA	NA	NA	NA
WP_141017998.1\|2261649_2262141_-	TIGR03750 family conjugal transfer protein	NA	NA	NA	NA
WP_141017999.1\|2262153_2262516_-	TIGR03745 family integrating conjugative element membrane protein	NA	NA	NA	NA
WP_141018000.1\|2262554_2262794_-	TIGR03758 family integrating conjugative element protein	NA	NA	NA	NA
WP_141018001.1\|2262790_2263159_-	raqprd family integrative conjugative element protein	NA	NA	NA	NA
WP_141020650.1\|2263376_2263640_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_141020651.1\|2263776_2264100_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_168224930.1\|2264099_2265392_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_141018003.1\|2265419_2266169_-	TIGR03747 family integrating conjugative element membrane protein	NA	NA	NA	NA
WP_141018004.1\|2266165_2268325_-	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA
WP_141018005.1\|2268335_2268881_-	integrating conjugative element protein	NA	NA	NA	NA
WP_141018006.1\|2268877_2269498_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_141020652.1\|2269482_2270202_-	TIGR03759 family integrating conjugative element protein	NA	NA	NA	NA
WP_141018007.1\|2270239_2270893_-	hypothetical protein	NA	NA	NA	NA
WP_141018008.1\|2270889_2271474_-	hypothetical protein	NA	NA	NA	NA
WP_141018009.1\|2271775_2272090_-	integration host factor subunit beta	A7KV42	Bacillus_phage	2.6e-13	42.2
WP_168224931.1\|2272223_2274533_-	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_141018011.1\|2274645_2274951_-	hypothetical protein	NA	NA	NA	NA
WP_141018012.1\|2275053_2276163_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_141018013.1\|2276230_2276887_-	hypothetical protein	NA	NA	NA	NA
WP_141018014.1\|2277544_2278573_+	AAA family ATPase	A0A1B0Z0Q4	Vibrio_phage	3.4e-09	26.9
WP_141018015.1\|2278550_2281040_+	S8 family serine peptidase	NA	NA	NA	NA
WP_168225035.1\|2281460_2281718_+\|transposase	transposase	A0A0P0ZBP6	Stx2-converting_phage	1.1e-12	63.6
WP_141018016.1\|2281875_2282223_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	3.4e-38	69.2
WP_141018017.1\|2282286_2282922_+\|transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	3.9e-40	43.0
WP_141018018.1\|2283878_2284337_+	hypothetical protein	NA	NA	NA	NA
WP_141018019.1\|2284270_2285017_+	hypothetical protein	NA	NA	NA	NA
WP_141018020.1\|2284983_2286597_+	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	1.4e-17	32.6
WP_141018021.1\|2286557_2287361_-	sel1 repeat family protein	NA	NA	NA	NA
WP_141018022.1\|2287726_2288629_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_141018023.1\|2288751_2288964_-	hypothetical protein	NA	NA	NA	NA
WP_141020654.1\|2288982_2289657_-	AAA family ATPase	NA	NA	NA	NA
WP_141018013.1\|2290022_2290679_-	hypothetical protein	NA	NA	NA	NA
WP_141018024.1\|2290999_2291827_-	DUF932 domain-containing protein	A0A2C9CYF8	Yersinia_phage	3.9e-48	39.9
WP_141018025.1\|2291917_2292529_-	DUF3275 family protein	NA	NA	NA	NA
WP_141018026.1\|2292584_2293127_-	DUF3577 domain-containing protein	NA	NA	NA	NA
WP_141020655.1\|2293646_2294117_-	hypothetical protein	NA	NA	NA	NA
WP_141020656.1\|2294182_2295157_-	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_141018027.1\|2295688_2296957_+\|transposase	IS4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

3667768 : 3676236

Macacine_betaherpesvirus(33.33%)

integrase,transposase

attL 3667652:3667711|attR 3675103:3676580

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3667652:3667711	attL	NA	NA	NA	NA
WP_141020742.1\|3667768_3668785_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_141019125.1\|3670629_3671625_-	hypothetical protein	NA	NA	NA	NA
WP_141019126.1\|3671741_3672149_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2I6AZV9	Macacine_betaherpesvirus	7.8e-10	27.1
WP_141017523.1\|3672185_3673220_-\|transposase	IS630 family transposase	S5VXX4	Leptospira_phage	1.5e-57	36.6
WP_141019127.1\|3673260_3673644_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.4e-05	28.8
WP_141018295.1\|3673649_3674006_-\|transposase	transposase	NA	NA	NA	NA
WP_141019128.1\|3674081_3675086_-	DUF4917 family protein	NA	NA	NA	NA
WP_141020742.1\|3675219_3676236_+\|transposase	IS110 family transposase	NA	NA	NA	NA
3675103:3676580	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP022958

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection