CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041181	Salmonella enterica subsp. enterica serovar Indiana strain SJTUF13520v2 isolate food chromosome, complete genome	3 crisprs	PD-DExK,DEDDh,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG	0	19	10	0
NZ_CP041182	Salmonella enterica subsp. enterica serovar Indiana strain SJTUF13520v2 isolate food plasmid p13520, complete sequence	0 crisprs	NA	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041181_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041181_1

585192-585292

Orphan

Consensus_repeat	Method
GCTTCAGTGGCGAGCGTCGTGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041181_1

>merge|NZ_CP041181|1|585192-585292|CRISPRCasFinder
GCTTCAGTGGCGAGCGTCGTGAAGGCGGTCGTAATTTCAGCGGCGAACGTCGTGAAGGCGGTCGTGGTGATGGTCGTCGCTTCAGCGGCGAGCGTCGTGAA

>NZ_CP041181|1|1|585192-585292|CRISPRCasFinder
GCTTCAGTGGCGAGCGTCGTGAA	GGCGGTCGTAATTTCAGCGGCGAACGTCGTGAAGGCGGTCGTGGTGATGGTCGTC
GCTTCAGCGGCGAGCGTCGTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041181.1\|WP_000884721.1\|591480_592005_+\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696
NZ_CP041181.1\|WP_000928379.1\|592488_592806_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|178979
NZ_CP041181.1\|WP_001040200.1\|578147_578549_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP041181.1\|WP_001670767.1\|580154_582290_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NZ_CP041181.1\|WP_000380404.1\|592843_593287_+\|YhbP-family-protein	unknown	unknown	gnl\|CDD\|235127
NZ_CP041181.1\|WP_023226588.1\|585505_586750_+\|tryptophan-permease	unknown	unknown	gnl\|CDD\|182492
NZ_CP041181.1\|WP_000207657.1\|571269_572613_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NZ_CP041181.1\|WP_023226587.1\|587499_588219_+\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225577
NZ_CP041181.1\|WP_000908562.1\|591998_592502_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP041181.1\|WP_000802069.1\|582399_583284_+\|lipoprotein-NlpI	unknown	unknown	gnl\|CDD\|236875
NZ_CP041181.1\|WP_000133064.1\|575247_577926_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NZ_CP041181.1\|WP_023226586.1\|588196_589204_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182505
NZ_CP041181.1\|WP_010723222.1\|583389_583470_+\|protein-YrbN	unknown	unknown	gnl\|CDD\|380282
NZ_CP041181.1\|WP_001727032.1\|578548_579493_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235333
NZ_CP041181.1\|WP_001031038.1\|573720_575223_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
NZ_CP041181.1\|WP_001294027.1\|586810_587341_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041181.1\|WP_001540959.1\|589381_590278_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
NZ_CP041181.1\|WP_000059465.1\|579643_579913_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP041181.1\|WP_000421309.1\|590268_591264_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP041181.1\|WP_000105461.1\|573240_573693_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627

Protein	Function_ID	Function_description	E-value
NZ_CP041181.1\|WP_000884721.1\|591480_592005_+\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	1.82299e-84
NZ_CP041181.1\|WP_000928379.1\|592488_592806_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	4.3214e-44
NZ_CP041181.1\|WP_001040200.1\|578147_578549_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	9.5207e-53
NZ_CP041181.1\|WP_001670767.1\|580154_582290_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NZ_CP041181.1\|WP_000380404.1\|592843_593287_+\|YhbP-family-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	1.36854e-99
NZ_CP041181.1\|WP_023226588.1\|585505_586750_+\|tryptophan-permease	gnl\|CDD\|182492	PRK10483, PRK10483, tryptophan permease; Provisional.	0
NZ_CP041181.1\|WP_000207657.1\|571269_572613_-\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NZ_CP041181.1\|WP_023226587.1\|587499_588219_+\|murein-L,D-transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	8.08205e-108
NZ_CP041181.1\|WP_000908562.1\|591998_592502_+\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	7.2703e-63
NZ_CP041181.1\|WP_000802069.1\|582399_583284_+\|lipoprotein-NlpI	gnl\|CDD\|236875	PRK11189, PRK11189, lipoprotein NlpI; Provisional.	0
NZ_CP041181.1\|WP_000133064.1\|575247_577926_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_CP041181.1\|WP_023226586.1\|588196_589204_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|182505	PRK10508, PRK10508, luciferase-like monooxygenase.	0
NZ_CP041181.1\|WP_010723222.1\|583389_583470_+\|protein-YrbN	gnl\|CDD\|380282	NF033440, small_YrbN, protein YrbN. YrbN, a small protein of only 26 amino acids, is found in at least these genera: Escherichia, Salmonella, Enterobacter, Klebsiella, and Yersinia. It is known to be expressed in E. coli.	1.66225e-08
NZ_CP041181.1\|WP_001727032.1\|578548_579493_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235333	PRK05033, truB, tRNA pseudouridine synthase B; Provisional.	0
NZ_CP041181.1\|WP_001031038.1\|573720_575223_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	0
NZ_CP041181.1\|WP_001540959.1\|589381_590278_-\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
NZ_CP041181.1\|WP_000059465.1\|579643_579913_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	7.70279e-54
NZ_CP041181.1\|WP_000421309.1\|590268_591264_-\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	3.77757e-116
NZ_CP041181.1\|WP_000105461.1\|573240_573693_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	4.39218e-79

>NZ_CP041181.1|WP_010723222.1|583389_583470_+|protein-YrbN
MKIADQFHDELCRLAAINFEAHVLHG
>NZ_CP041181.1|WP_000802069.1|582399_583284_+|lipoprotein-NlpI
MKPFLRWCFVATALTLAGCSNSAWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPYRSLWLYLVEQKLNEKQAKEALKARFEKSDKEQWGWNIVEFYLGDISEATLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ
>NZ_CP041181.1|WP_001670767.1|580154_582290_+|polyribonucleotide-nucleotidyltransferase
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAAAPEAPASEQAE
>NZ_CP041181.1|WP_000059465.1|579643_579913_+|30S-ribosomal-protein-S15
MSLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR
>NZ_CP041181.1|WP_001727032.1|578548_579493_+|tRNA-pseudouridine(55)-synthase-TruB
MSRPRRRGRDIHGVLLLDKPQGMSSNDVLQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVQERPVTFSAEQLASALETFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEVHCSKGTYIRTIIDDLGEKLGCGAHVTYLRRLTVSKYPIERMVTLEHLQTLVAQAEQQGVPAAQLLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTTGAPLKGLVRVTEGEDDKFIGMGEIDDEGRVAPRRLVVEYPA
>NZ_CP041181.1|WP_001040200.1|578147_578549_+|30S-ribosome-binding-factor-RbfA
MAKEFGRPQRVAQEMQKEIAIILQREIKDPRLGMMTTVSGVEMSRDLAYAKVFVTFLNDQDEAAVKNGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMRMSNLVTNVVKHDEERRVNPDDSKED
>NZ_CP041181.1|WP_000133064.1|575247_577926_+|translation-initiation-factor-IF-2
MTDVTLKALAAERQVSVDRLVQQFADAGIRKSADDSVSAQEKQTLLAHLNREAVSGPDKLTLQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKRDPQEAERLAAEEQAQREAEEQARREAEEQAKREAQQKAEREAAEQAKREAAEKAKREAAEKDKVSNQQTDDMTKTAQAEKARRENEAAELKRKAEEEARRKLEEEARRVAEEARRMAEENKWTATPEPVEDTSDYHVTTSQHARQAEDENDREVEGGRGRGRNAKAARPAKKGKHAESKADREEARAAVRGGKGGKRKGSSLQQGFQKPAQAVNRDVVIGETITVGELANKMAVKGSQVIKAMMKLGAMATINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETDNGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAGVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVIESESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGTIKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRVGDMIEVFEIIEIQRTIA
>NZ_CP041181.1|WP_001031038.1|573720_575223_+|transcription-termination/antitermination-protein-NusA
MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIEIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATLAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIEGLTDEKAGELIMAARNICWFGDEA
>NZ_CP041181.1|WP_000105461.1|573240_573693_+|ribosome-maturation-factor-RimP
MSTLEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF
>NZ_CP041181.1|WP_000207657.1|571269_572613_-|argininosuccinate-synthase
MTTILKHLPAGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEKAYSTDSNMLGATHEAKDLEFLNSSVKIVNPIMGVKFWDESVKIPAEVVTVRFEQGHPVALNGKTFSDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLLTGIHNEDTIEQYHSHGRQLGKLLYQGRWFDSQALMLRDGLQRWVASQITGEVTLELRRGNDYSILNTVSDNLTYKPERLTMEKGDSVFSPDDRIGQLTMRNLDITDTREKLFGYAKAGLLTASSATGLPQVENLENKGK
>NZ_CP041181.1|WP_023226588.1|585505_586750_+|tryptophan-permease
MATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALVFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFAFALLVAFVVWLSTKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPTTLFNVAESHASYTPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPRTIVKCLIYGTLLALALYSVWLLGTMGNIPRPEFIGIAQKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGLDDSAMGRFKTALLTFVPPIVGGLLGPNGFLYAIGYAGLAATIWAAIVPALLARKSRERFGSPKFRVWGGTPMIVLILVFGVGNAVIHILSSFNLLPVYQ
>NZ_CP041181.1|WP_001294027.1|586810_587341_-|hypothetical-protein
MSEPASFFLHAHITESNLKKFFHSPATNIKDYDDWLPWFTEEQRLYGDPAKMLNNLATCNSGESEKNIYAEHINFNKETQIVTMDHIFLSESYEIFMPLMACVRGIEKFITPGENNFALIYYYWWGSEIAIALEFDANGSRITANPKAENLTIADAFFDEHGEALAEELYNKQGFI
>NZ_CP041181.1|WP_023226587.1|587499_588219_+|murein-L,D-transpeptidase
MGRKGLLAIVLLSLFIAFILKFFWLTPYDEDVYLPVEKPVASSLKIIHPGDQLFIRILKAEDKLELWASANNKPYELYKTWTICAWSGGLGPKHKQGDGKSPEGFYATNKGLLNPNSRYHLAFNIGYPNAYDRANGYTGDFIMVHGNCVSAGCYAMTDAGIEEIYQLVAQALNSGQKSVPVHIFPFTMNDENMRQAQAWPEYNFWRMLKPGYDYFEKHRRLPTITVENRRYKISPTTLP
>NZ_CP041181.1|WP_023226586.1|588196_589204_-|LLM-class-flavin-dependent-oxidoreductase
MTDKTIPFSVLDLAPIPEGSSAKEAFTHSLDLARLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQPTMRALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPGYGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRTQFKPSARLEKPYAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPVENMKTFWSPSEQYGVQQALSMSLVGDKAKVRHGLVSILRETQADEIMVNGQIFDHQARLHSFDLAMDVKEELLG
>NZ_CP041181.1|WP_001540959.1|589381_590278_-|U32-family-peptidase
MAVRGAMKYSLGPVLYYWPKETLEDFYQQAAKSSADVIYLGEAVCSKRRATKVGDWLEMAKSLAASGKQVALSTLALVQASSELSELKRYVDNGDFLLEASDLGVVNLCAERKLPFVAGHALNCYNAVTLRRLLKEGMVRWCMPVELSRDWLVNLLNQCDELGIRNQFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRDVLSQENQQVFVLNGIQTMSGYVYNLGNELTSMQGLVDIVRLSPLGTETFAMLDAFRANENGGAPLPLAAHSDCNGYWKRLAGLELQA
>NZ_CP041181.1|WP_000421309.1|590268_591264_-|U32-family-peptidase
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAIRFYHRNFDVHRVVLPRVLSIHQVKQLARVTPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNDVLIDRYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCKAAPQNFVPQRDWMETLGAMSEGTQTTLGAYHRKWQ
>NZ_CP041181.1|WP_000884721.1|591480_592005_+|SCP2-domain-containing-protein
MLDKLRSRLVHAGPSLMSVPVKLTPFALKRQVLEQVLSWQFRQALADGELEFLEGRWLSIHVRDIDLKWYTTVENEKLIVSQQADADVSFSADASDLLMIAARKQDPDTLFFQRRLVIEGDTELGLYVKNLMDAIELEQMPKALRVMLLQLADFVEAGMKNSPETKQTSVGEPC
>NZ_CP041181.1|WP_000908562.1|591998_592502_+|N-acetyltransferase
MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGLVATDDEGQVVGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNEFGYAAVVTLGDPALYSRFGFELAAHYDLHCRWPGTESAFQVHRLAEDALEGVTGLVEYHDHFNRF
>NZ_CP041181.1|WP_000928379.1|592488_592806_-|GIY-YIG-nuclease-family-protein
MLMATMTPWYLYLIRTADNALYTGITTDVARRYRQHQTGKGAKALRGKGELTLAFAAQVGDRSLALRIEYRIKQLTKRQKERLVTEREAFEALLSSLQTPVLKND
>NZ_CP041181.1|WP_000380404.1|592843_593287_+|YhbP-family-protein
MDTLTAIGRWLAKQHVVTWCVHHEGELWCANAFYLFDAQNVALYLLTDDKTRHAQMSGACAPVAGTVNGQPKTVARIRGVQFKGEIRRLEGQESDAARKAYLRRFPVARVLPAPVWEIRLDEIKFTDNTLGFGKKLHWLRDSRAQQA

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Crispr_ID: NZ_CP041181_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041181_2

960508-961574

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

17 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NZ_CP041181_2

>merge|NZ_CP041181|2|960508-961574|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGTGTAACCACTGCGATATGGGCGATGACACAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGGAAGCGCAGCAGAACGCCCGGTCGCAGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGATCACCGGCACGCGCGATAACGGGTCTGATTAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGAAAATTACCGGGCAGTCACCGTGGGGGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGACGATCCAGATATTTGGCTGGATGCAATCGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCCATCGGTAACCTCTCACTATCGGTGTGTCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTTTTATGTCTGGTGGATATAACGCACTGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAAAAACAGGTAAATTTGTTCGCTTCGTCAAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTATCCCGAAATCACGTTCAAGAAAAATCCGGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGTTGATCAGAACGGCAACGAACGCACGTACGTGTTCCCCGCGCCAGCGGGGATAAACCGTCAGCGTAGGTTGTTGACGTCCCCACCAGCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCATTTTTGATCATCTCCTCCAGCCTGCTGAGGTGTTCCCCGCGCTAGCGGGGATAAACCGCACTGGAGATATAGCTGCTGTCGTCATCGGGTGTGTTCCCCGCGCTAGCGGGGATAAACCAGTCAAATAAATATGAGTGAAGAAGCCAAAGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCATAAGAGCATCCCCGCCATCCGGAGGGGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGGACATTCTCGCTAGTCACGGTCATGTCATGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCGCCAACGACTGGAATTTTTGCGTGTAGCCGTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP041181|2|1|960508-961513|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTAACCACTGCGATATGGGCGATGACACAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGAAGCGCAGCAGAACGCCCGGTCGCAGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCACCGGCACGCGCGATAACGGGTCTGATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAAAATTACCGGGCAGTCACCGTGGGGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGATCCAGATATTTGGCTGGATGCAATCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCATCGGTAACCTCTCACTATCGGTGTGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTTTTATGTCTGGTGGATATAACGCACTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAACAGGTAAATTTGTTCGCTTCGTCAAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTATCCCGAAATCACGTTCAAGAAAAATCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGTTGATCAGAACGGCAACGAACGCACGTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCGTAGGTTGTTGACGTCCCCACCAGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATTTTTGATCATCTCCTCCAGCCTGCTGAG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CACTGGAGATATAGCTGCTGTCGTCATCGGGT
GTGTTCCCCGCGCTAGCGGGGATAAACCA	GTCAAATAAATATGAGTGAAGAAGCCAAAGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATAAGAGCATCCCCGCCATCCGGAGGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGACATTCTCGCTAGTCACGGTCATGTCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP041181|2|2|960508-961574|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTAACCACTGCGATATGGGCGATGACACAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGAAGCGCAGCAGAACGCCCGGTCGCAGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCACCGGCACGCGCGATAACGGGTCTGATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAAAATTACCGGGCAGTCACCGTGGGGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGATCCAGATATTTGGCTGGATGCAATCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCATCGGTAACCTCTCACTATCGGTGTGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTTTTATGTCTGGTGGATATAACGCACTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAACAGGTAAATTTGTTCGCTTCGTCAAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTATCCCGAAATCACGTTCAAGAAAAATCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGTTGATCAGAACGGCAACGAACGCACGTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCGTAGGTTGTTGACGTCCCCACCAGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATTTTTGATCATCTCCTCCAGCCTGCTGAG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CACTGGAGATATAGCTGCTGTCGTCATCGGGT
GTGTTCCCCGCGCTAGCGGGGATAAACCA	GTCAAATAAATATGAGTGAAGAAGCCAAAGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATAAGAGCATCCCCGCCATCCGGAGGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGACATTCTCGCTAGTCACGGTCATGTCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCGCCAACGACTGGAATTTTTGCGTGTAGCC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP041181|2|1|960508-961574|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTAACCACTGCGATATGGGCGATGACACAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGAAGCGCAGCAGAACGCCCGGTCGCAGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCACCGGCACGCGCGATAACGGGTCTGATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAAAATTACCGGGCAGTCACCGTGGGGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGATCCAGATATTTGGCTGGATGCAATCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCATCGGTAACCTCTCACTATCGGTGTGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTTTTATGTCTGGTGGATATAACGCACTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAACAGGTAAATTTGTTCGCTTCGTCAAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTATCCCGAAATCACGTTCAAGAAAAATCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGTTGATCAGAACGGCAACGAACGCACGTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCGTAGGTTGTTGACGTCCCCACCAGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATTTTTGATCATCTCCTCCAGCCTGCTGAG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CACTGGAGATATAGCTGCTGTCGTCATCGGGT
GTGTTCCCCGCGCTAGCGGGGATAAACCA	GTCAAATAAATATGAGTGAAGAAGCCAAAGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATAAGAGCATCCCCGCCATCCGGAGGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGACATTCTCGCTAGTCACGGTCATGTCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCGCCAACGACTGGAATTTTTGCGTGTAGCC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041181.1\|WP_023227128.1\|969085_971785_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP041181.1\|WP_077910006.1\|951381_954081_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
NZ_CP041181.1\|WP_000210451.1\|955357_956158_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP041181.1\|WP_000842512.1\|954160_954748_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185169
NZ_CP041181.1\|WP_023227126.1\|974319_975378_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP041181.1\|WP_023227130.1\|965141_966854_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP041181.1\|WP_001207997.1\|961671_962469_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP041181.1\|WP_023227753.1\|949584_950055_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
NZ_CP041181.1\|WP_000210863.1\|956385_958023_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP041181.1\|WP_001044459.1\|950595_951369_-\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|185177
NZ_CP041181.1\|WP_000036734.1\|958105_959404_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP041181.1\|WP_000935106.1\|973694_974297_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP041181.1\|WP_001199963.1\|959539_960211_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP041181.1\|WP_001079652.1\|949051_949588_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185168
NZ_CP041181.1\|WP_023227131.1\|963342_965142_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP041181.1\|WP_023227127.1\|972142_973678_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP041181.1\|WP_023227129.1\|967751_968705_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP041181.1\|WP_001650537.1\|966929_967664_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP041181.1\|WP_023202651.1\|950069_950576_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
NZ_CP041181.1\|WP_000108313.1\|962556_962919_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264

Protein	Function_ID	Function_description	E-value
NZ_CP041181.1\|WP_023227128.1\|969085_971785_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	7.41652e-143
NZ_CP041181.1\|WP_077910006.1\|951381_954081_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
NZ_CP041181.1\|WP_000210451.1\|955357_956158_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NZ_CP041181.1\|WP_000842512.1\|954160_954748_-\|fimbrial-protein	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
NZ_CP041181.1\|WP_023227126.1\|974319_975378_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	2.13373e-121
NZ_CP041181.1\|WP_023227130.1\|965141_966854_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP041181.1\|WP_001207997.1\|961671_962469_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	7.9973e-103
NZ_CP041181.1\|WP_023227753.1\|949584_950055_-\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	1.80714e-98
NZ_CP041181.1\|WP_000210863.1\|956385_958023_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP041181.1\|WP_001044459.1\|950595_951369_-\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
NZ_CP041181.1\|WP_000036734.1\|958105_959404_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP041181.1\|WP_000935106.1\|973694_974297_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	1.07044e-37
NZ_CP041181.1\|WP_001199963.1\|959539_960211_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	5.23698e-155
NZ_CP041181.1\|WP_001079652.1\|949051_949588_-\|fimbrial-protein	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	3.12658e-120
NZ_CP041181.1\|WP_023227131.1\|963342_965142_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP041181.1\|WP_023227127.1\|972142_973678_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP041181.1\|WP_023227129.1\|967751_968705_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP041181.1\|WP_001650537.1\|966929_967664_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	4.20028e-139
NZ_CP041181.1\|WP_023202651.1\|950069_950576_-\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	9.68477e-105
NZ_CP041181.1\|WP_000108313.1\|962556_962919_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58

>NZ_CP041181.1|WP_001199963.1|959539_960211_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLYSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP041181.1|WP_000036734.1|958105_959404_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP041181.1|WP_000210863.1|956385_958023_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP041181.1|WP_000210451.1|955357_956158_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP041181.1|WP_000842512.1|954160_954748_-|fimbrial-protein
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>NZ_CP041181.1|WP_077910006.1|951381_954081_-|fimbrial-biogenesis-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSASPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDESTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPPTFTPELLANALLLPCKMLEGQPPTAPQKAAPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>NZ_CP041181.1|WP_001044459.1|950595_951369_-|fimbria/pilus-periplasmic-chaperone
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>NZ_CP041181.1|WP_023202651.1|950069_950576_-|fimbrial-protein
MTMLTRWKMLVLLCGGFVAGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDVSQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>NZ_CP041181.1|WP_023227753.1|949584_950055_-|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSAKALTTNVPGLGIELQQNGTVFPPGTSLTINESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>NZ_CP041181.1|WP_001079652.1|949051_949588_-|fimbrial-protein
MNRIFQTTGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVVVTFQGVEDSTLPGLLALESSSIANGFAIGIETADQHPLIINASQGTEFMLAEGNTIINLQAWLQKTSGENIMPGEFNASAMVNFEYQ
>NZ_CP041181.1|WP_001207997.1|961671_962469_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP041181.1|WP_000108313.1|962556_962919_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP041181.1|WP_023227131.1|963342_965142_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGSVNDIHTSPYTKDAPLAATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARTGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAADGSEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGAMDIEAADEFLSELRVERRYQRDVY
>NZ_CP041181.1|WP_023227130.1|965141_966854_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKRESNFLRGTIAEDLNDGLTGGFHGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTTQWKAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESELHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGFLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGITFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRMGTRIPRMYRENITESEILDSVDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP041181.1|WP_001650537.1|966929_967664_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP041181.1|WP_023227129.1|967751_968705_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NZ_CP041181.1|WP_023227128.1|969085_971785_-|CRISPR-associated-helicase/endonuclease-Cas3
MTQIEYLDYLCYWGKTDKSTKNIICNYHLLAYHCLDVAACGKYIIKNNIFNSCNILKECNISGTNAENWIVWFLASHDIGKFARGFQKYAEFPDSPLVSPVSGVSAFERHDSLGFYLWGKLFEAWSSGSNEIIAGIEPENRARFESALNSWMLISTGHHGIPPDTMKNRSSLAFTDEDIVAATHYLEALSELFPFTLPQEWKTKAGRKCLKQHSWFFAGLVTLADWMGSDESQFPLLSSAMPLKDYWPLACEKAQQAILRMPPLSQHSHYQDHRALFPFIQTLTPLQQRASELDISAPGAQLIVLEDVTGAGKTEAALILTHRLMSANKGHGLYVGLPTMATANAMYQRLASAYHALFTDESRPSLILAHGGREMSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKVLLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAGFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPQQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPVLHILAPHWQEQAEEGWLGQELKGTGFVYADHACLWRTQALLRQHGEIRMPDNARALVDGVYEQKIAAPAGLQTISDVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQVVLVSDAGEASYYSKHFGLVG
>NZ_CP041181.1|WP_023227127.1|972142_973678_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGLSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMDKAKVRCWYQHRIPLISVSHEEQFLAALNIVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>NZ_CP041181.1|WP_000935106.1|973694_974297_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAVLCRILHPDAQKALLDWFATLSERYERKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKANISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERNRIRWANEYLSTSRGK
>NZ_CP041181.1|WP_023227126.1|974319_975378_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAALDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFGRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ

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Crispr_ID: NZ_CP041181_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041181_3

978115-979180

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

17 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP041181_3

>merge|NZ_CP041181|3|978115-979180|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGAGCACACATTGTGTGACGGTCGCCGTCTGGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGTTGTCCTTGTAATGGGGGGGGGCATTTGGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCGACGGGTTCGTCCGACCGCATCCGGGCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCTTGGAACCATAAAAGATGGGCAAATAGTGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGATTTTATTAGCGACTATCCAGGAATAAATTACGTGTTCCCCGCGCCAGCGGGGATAAACCGGGTGTTACTGATGGTGGGGCGCTGGATGAGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAGCGCGTCAGGAACGTTTCTGGGGTGGCCTGAGTGTTCCCCGCGCCAGCGGGGATAAACCGAGTGTCCACACTGCGGCGCTGAAAAATGCAACGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCGTTTGATCTCCACTCACAACGGTATTGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCGGAGTCCGGATCATCATTCAGGATAACGAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAATCGCGCGGCGATCGACTCAAGGCGGCGACGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAATCGTGAGTGACTATCGTTCTGTTATTGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCTCTGTGATTACCCCGGAGCATGGCGGTGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGCCGGGGAAACAAGGAAAGTCCTGGTTTTTGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTGAAATCGCTATTCTTATTGCTGTAGCAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTAACTAAAACGAACAAAACAGGGAAATCAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAGACAACTCCTGTCTTTCCATCACTCGAAGCGTGTTCCCCGCGCCAGCGGGGATAAACAC

>NZ_CP041181|3|2|978115-979180|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCACACATTGTGTGACGGTCGCCGTCTGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGTTGTCCTTGTAATGGGGGGGGGCATTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGACGGGTTCGTCCGACCGCATCCGGGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTGGAACCATAAAAGATGGGCAAATAGTGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTTATTAGCGACTATCCAGGAATAAATTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTGTTACTGATGGTGGGGCGCTGGATGAGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCGCGTCAGGAACGTTTCTGGGGTGGCCTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTGTCCACACTGCGGCGCTGAAAAATGCAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCGTTTGATCTCCACTCACAACGGTATTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCGGAGTCCGGATCATCATTCAGGATAACGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATCGCGCGGCGATCGACTCAAGGCGGCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATCGTGAGTGACTATCGTTCTGTTATTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCTGTGATTACCCCGGAGCATGGCGGTGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGCCGGGGAAACAAGGAAAGTCCTGGTTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGAAATCGCTATTCTTATTGCTGTAGCAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTAACTAAAACGAACAAAACAGGGAAATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAGACAACTCCTGTCTTTCCATCACTCGAAGC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

>NZ_CP041181|3|3|978115-979180|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCACACATTGTGTGACGGTCGCCGTCTGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGTTGTCCTTGTAATGGGGGGGGGCATTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGACGGGTTCGTCCGACCGCATCCGGGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTGGAACCATAAAAGATGGGCAAATAGTGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTTATTAGCGACTATCCAGGAATAAATTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTGTTACTGATGGTGGGGCGCTGGATGAGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCGCGTCAGGAACGTTTCTGGGGTGGCCTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTGTCCACACTGCGGCGCTGAAAAATGCAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCGTTTGATCTCCACTCACAACGGTATTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCGGAGTCCGGATCATCATTCAGGATAACGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATCGCGCGGCGATCGACTCAAGGCGGCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATCGTGAGTGACTATCGTTCTGTTATTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCTGTGATTACCCCGGAGCATGGCGGTGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGCCGGGGAAACAAGGAAAGTCCTGGTTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGAAATCGCTATTCTTATTGCTGTAGCAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTAACTAAAACGAACAAAACAGGGAAATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAGACAACTCCTGTCTTTCCATCACTCGAAGC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

>NZ_CP041181|3|2|978115-979180|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCACACATTGTGTGACGGTCGCCGTCTGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGTTGTCCTTGTAATGGGGGGGGGCATTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGACGGGTTCGTCCGACCGCATCCGGGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTGGAACCATAAAAGATGGGCAAATAGTGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTTATTAGCGACTATCCAGGAATAAATTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTGTTACTGATGGTGGGGCGCTGGATGAGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCGCGTCAGGAACGTTTCTGGGGTGGCCTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTGTCCACACTGCGGCGCTGAAAAATGCAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCGTTTGATCTCCACTCACAACGGTATTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCGGAGTCCGGATCATCATTCAGGATAACGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATCGCGCGGCGATCGACTCAAGGCGGCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATCGTGAGTGACTATCGTTCTGTTATTGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCTGTGATTACCCCGGAGCATGGCGGTGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGCCGGGGAAACAAGGAAAGTCCTGGTTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTGAAATCGCTATTCTTATTGCTGTAGCAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTAACTAAAACGAACAAAACAGGGAAATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAGACAACTCCTGTCTTTCCATCACTCGAAGC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041181.1\|WP_023227127.1\|972142_973678_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP041181.1\|WP_023227128.1\|969085_971785_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP041181.1\|WP_001221538.1\|986551_987313_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP041181.1\|WP_001537530.1\|983491_983815_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP041181.1\|WP_023227572.1\|979194_980241_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP041181.1\|WP_001173659.1\|982835_983441_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP041181.1\|WP_000517480.1\|984005_984317_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP041181.1\|WP_000062284.1\|977736_978030_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP041181.1\|WP_023227126.1\|974319_975378_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP041181.1\|WP_000134246.1\|985521_986571_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP041181.1\|WP_000281414.1\|976112_976817_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795
NZ_CP041181.1\|WP_001219244.1\|985045_985525_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP041181.1\|WP_000935106.1\|973694_974297_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP041181.1\|WP_023227125.1\|975387_976113_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP041181.1\|WP_023227571.1\|981409_982849_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP041181.1\|WP_023227129.1\|967751_968705_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP041181.1\|WP_001650537.1\|966929_967664_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP041181.1\|WP_000741649.1\|984335_985046_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP041181.1\|WP_000118674.1\|976816_977734_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP041181.1\|WP_000372384.1\|980491_981400_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375

Protein	Function_ID	Function_description	E-value
NZ_CP041181.1\|WP_023227127.1\|972142_973678_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP041181.1\|WP_023227128.1\|969085_971785_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	7.41652e-143
NZ_CP041181.1\|WP_001221538.1\|986551_987313_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_CP041181.1\|WP_001537530.1\|983491_983815_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
NZ_CP041181.1\|WP_023227572.1\|979194_980241_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP041181.1\|WP_001173659.1\|982835_983441_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	3.2499e-145
NZ_CP041181.1\|WP_000517480.1\|984005_984317_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP041181.1\|WP_000062284.1\|977736_978030_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	7.65966e-64
NZ_CP041181.1\|WP_023227126.1\|974319_975378_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	2.13373e-121
NZ_CP041181.1\|WP_000134246.1\|985521_986571_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP041181.1\|WP_000281414.1\|976112_976817_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	6.33841e-89
NZ_CP041181.1\|WP_001219244.1\|985045_985525_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NZ_CP041181.1\|WP_000935106.1\|973694_974297_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	1.07044e-37
NZ_CP041181.1\|WP_023227125.1\|975387_976113_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.42656e-47
NZ_CP041181.1\|WP_023227571.1\|981409_982849_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP041181.1\|WP_023227129.1\|967751_968705_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP041181.1\|WP_001650537.1\|966929_967664_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	4.20028e-139
NZ_CP041181.1\|WP_000741649.1\|984335_985046_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
NZ_CP041181.1\|WP_000118674.1\|976816_977734_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.03247e-157
NZ_CP041181.1\|WP_000372384.1\|980491_981400_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0

>NZ_CP041181.1|WP_000062284.1|977736_978030_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLAVWLLEIRAGVYVGDVSTKIREMIWQQVSVLADEGNVVMAWATNTESSFEFQTFGVNRRIPVDLDGLRLVSFLPVENQ
>NZ_CP041181.1|WP_000118674.1|976816_977734_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVRATYALLAKQYGVKWQGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFETVVPKAFEIARRNPAEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAAGEIQPPLPPEDSQPIAIPLPVALGDSGHRST
>NZ_CP041181.1|WP_000281414.1|976112_976817_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRIQLRFNNLRPEMLAKWNSARPYASHQWLWQLFPEQELRQFLFREEAHGGFFMLSAIPPLLQHSLFLIETKPFNPQLTNGLELDFQLRANPVITRNGKRSDVMMNAKHQAKANGVEKERWWELQQQAAQAWLEQQGQQHGFRLIAPEPDDFAMWAGDEYSELQAHCGCVQAYQQHRFVRKDQQKPITFSSVDFNGALCITDAALFKQALFSGLGKSKALGCGMLMVKRKR
>NZ_CP041181.1|WP_023227125.1|975387_976113_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRHYHLAVHALASQDRWLRDYHTVGAPRENKKYRYYTRRDELTLAPDEVGTLISQREYRCDGYWHVAISATPDAPHSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT
>NZ_CP041181.1|WP_023227126.1|974319_975378_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAALDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFGRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>NZ_CP041181.1|WP_000935106.1|973694_974297_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAVLCRILHPDAQKALLDWFATLSERYERKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKANISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERNRIRWANEYLSTSRGK
>NZ_CP041181.1|WP_023227127.1|972142_973678_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGLSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMDKAKVRCWYQHRIPLISVSHEEQFLAALNIVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>NZ_CP041181.1|WP_023227128.1|969085_971785_-|CRISPR-associated-helicase/endonuclease-Cas3
MTQIEYLDYLCYWGKTDKSTKNIICNYHLLAYHCLDVAACGKYIIKNNIFNSCNILKECNISGTNAENWIVWFLASHDIGKFARGFQKYAEFPDSPLVSPVSGVSAFERHDSLGFYLWGKLFEAWSSGSNEIIAGIEPENRARFESALNSWMLISTGHHGIPPDTMKNRSSLAFTDEDIVAATHYLEALSELFPFTLPQEWKTKAGRKCLKQHSWFFAGLVTLADWMGSDESQFPLLSSAMPLKDYWPLACEKAQQAILRMPPLSQHSHYQDHRALFPFIQTLTPLQQRASELDISAPGAQLIVLEDVTGAGKTEAALILTHRLMSANKGHGLYVGLPTMATANAMYQRLASAYHALFTDESRPSLILAHGGREMSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKVLLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAGFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPQQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPVLHILAPHWQEQAEEGWLGQELKGTGFVYADHACLWRTQALLRQHGEIRMPDNARALVDGVYEQKIAAPAGLQTISDVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQVVLVSDAGEASYYSKHFGLVG
>NZ_CP041181.1|WP_023227129.1|967751_968705_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NZ_CP041181.1|WP_001650537.1|966929_967664_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP041181.1|WP_023227572.1|979194_980241_-|aminopeptidase
MFSATRRFAIILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP041181.1|WP_000372384.1|980491_981400_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP041181.1|WP_023227571.1|981409_982849_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIASEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP041181.1|WP_001173659.1|982835_983441_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHHRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP041181.1|WP_001537530.1|983491_983815_+|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP041181.1|WP_000517480.1|984005_984317_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP041181.1|WP_000741649.1|984335_985046_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP041181.1|WP_001219244.1|985045_985525_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP041181.1|WP_000134246.1|985521_986571_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP041181.1|WP_001221538.1|986551_987313_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041181_3	3.8\|978571\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	978571-978602	32	NZ_CP026270	Klebsiella oxytoca strain KONIH4 plasmid unnamed, complete sequence	39148-39179	1	0.969
NZ_CP041181_3	3.1\|978144\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	978144-978175	32	CP051275	Salmonella phage SW-37, complete genome	23580-23611	2	0.938
NZ_CP041181_2	2.1\|960537\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	960537-960568	32	MT374854	Yersinia phage vB_YpM_6, complete genome	10937-10968	3	0.906
NZ_CP041181_2	2.1\|960537\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	960537-960568	32	MT374853	Yersinia phage vB_YpM_5, complete genome	12313-12344	3	0.906
NZ_CP041181_2	2.1\|960537\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	960537-960568	32	AF083977	Bacteriophage Mu, complete genome	7597-7628	3	0.906
NZ_CP041181_2	2.1\|960537\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	960537-960568	32	M64097	Bacteriophage Mu left end	7595-7626	3	0.906
NZ_CP041181_2	2.1\|960537\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	960537-960568	32	NC_000929	Enterobacteria phage Mu, complete genome	7597-7628	3	0.906
NZ_CP041181_2	2.1\|960537\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	960537-960568	32	NC_013594	Escherichia phage D108, complete genome	7557-7588	4	0.875
NZ_CP041181_2	2.1\|960537\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	960537-960568	32	KP010268	Enterobacteria phage SfMu, complete genome	8083-8114	4	0.875
NZ_CP041181_2	2.1\|960537\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	960537-960568	32	LR595867	Escherichia virus Mu_3F6 genome assembly, chromosome: 1	7716-7747	4	0.875
NZ_CP041181_2	2.1\|960537\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	960537-960568	32	MT374852	Yersinia phage vB_YpM_3, complete genome	7747-7778	4	0.875
NZ_CP041181_2	2.1\|960537\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	960537-960568	32	MT374856	Yersinia phage vB_YpM_23, complete genome	11649-11680	4	0.875
NZ_CP041181_2	2.1\|960537\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	960537-960568	32	MT591577	Yersinia phage vB_YpM_Tongde, complete genome	29404-29435	4	0.875
NZ_CP041181_2	2.2\|960598\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	960598-960629	32	NZ_CP054618	Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence	119595-119626	5	0.844
NZ_CP041181_3	3.7\|978510\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	978510-978541	32	CP053333	Salmonella enterica subsp. diarizonae serovar 47:k:z35 strain 2009K1094 plasmid unnamed1, complete sequence	113183-113214	6	0.812
NZ_CP041181_3	3.7\|978510\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	978510-978541	32	CP053333	Salmonella enterica subsp. diarizonae serovar 47:k:z35 strain 2009K1094 plasmid unnamed1, complete sequence	120706-120737	6	0.812
NZ_CP041181_3	3.7\|978510\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	978510-978541	32	NZ_CP022660	Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence	68243-68274	6	0.812
NZ_CP041181_3	3.7\|978510\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	978510-978541	32	NZ_CP045061	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence	68247-68278	6	0.812
NZ_CP041181_3	3.7\|978510\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	978510-978541	32	NZ_CP045054	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence	68254-68285	6	0.812
NZ_CP041181_3	3.7\|978510\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	978510-978541	32	NZ_CP045058	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence	68253-68284	6	0.812
NZ_CP041181_2	2.2\|960598\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	960598-960629	32	NZ_CP011808	Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-1, complete sequence	305581-305612	7	0.781
NZ_CP041181_2	2.5\|960781\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	960781-960812	32	MT162468	Synechococcus phage S-H25, complete genome	90729-90760	7	0.781
NZ_CP041181_2	2.10\|961087\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	961087-961118	32	NZ_LR594663	Variovorax sp. RA8 plasmid 2	279825-279856	7	0.781
NZ_CP041181_3	3.15\|978998\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	978998-979029	32	NZ_CP023073	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666d, complete sequence	24323-24354	7	0.781
NZ_CP041181_2	2.7\|960903\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	960903-960934	32	MN693323	Marine virus AFVG_25M87, complete genome	37357-37388	8	0.75
NZ_CP041181_2	2.10\|961087\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	961087-961118	32	MT108725	Pseudomonas phage Epa5, complete genome	54783-54814	8	0.75
NZ_CP041181_2	2.12\|961209\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	961209-961240	32	NZ_CP049914	Vibrio sp. HDW18 plasmid p_unnamed1, complete sequence	234396-234427	8	0.75
NZ_CP041181_2	2.12\|961209\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	961209-961240	32	NC_018688	Bacillus thuringiensis MC28 plasmid pMC319, complete sequence	85616-85647	8	0.75
NZ_CP041181_3	3.7\|978510\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	978510-978541	32	NZ_CP024314	Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence	1326101-1326132	8	0.75
NZ_CP041181_3	3.10\|978693\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	978693-978724	32	MN908689	Arthrobacter phage DrSierra, complete genome	14906-14937	8	0.75
NZ_CP041181_3	3.16\|979059\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	979059-979090	32	NZ_CP026096	Bacillus asahii strain OM18 plasmid pOM18, complete sequence	34073-34104	8	0.75
NZ_CP041181_2	2.2\|960598\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	960598-960629	32	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	345226-345257	9	0.719
NZ_CP041181_2	2.2\|960598\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	960598-960629	32	NC_013858	Azospirillum sp. B510 plasmid pAB510d, complete sequence	476514-476545	9	0.719
NZ_CP041181_2	2.3\|960659\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	960659-960690	32	JN672684	Enterobacteria phage F20, partial genome	14629-14660	9	0.719
NZ_CP041181_2	2.9\|961026\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	961026-961057	32	KM507819	Escherichia phage 121Q, complete genome	157385-157416	9	0.719
NZ_CP041181_2	2.10\|961087\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	961087-961118	32	NZ_CP038392	Escherichia coli O157:H7 strain DEC5B plasmid pDEC5B-4, complete sequence	49-80	9	0.719
NZ_CP041181_2	2.10\|961087\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	961087-961118	32	NZ_CP027439	Escherichia coli strain 2012C-4221 plasmid unnamed2, complete sequence	13856-13887	9	0.719
NZ_CP041181_2	2.10\|961087\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	961087-961118	32	MT108731	Pseudomonas phage Epa43, complete genome	17620-17651	9	0.719
NZ_CP041181_3	3.6\|978449\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	978449-978480	32	NZ_CP017782	Rhodobacter sp. LPB0142 plasmid pEJ01, complete sequence	203266-203297	9	0.719
NZ_CP041181_3	3.11\|978754\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	978754-978785	32	NZ_CP013345	Sphingopyxis macrogoltabida strain 203N plasmid unnamed1, complete sequence	247366-247397	9	0.719
NZ_CP041181_2	2.9\|961026\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	961026-961057	32	NC_028822	Escherichia phage P483, complete genome	30079-30110	10	0.688
NZ_CP041181_2	2.14\|961331\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	961331-961362	32	NZ_CP046164	Vibrio sp. THAF191c plasmid pTHAF191c_c, complete sequence	362233-362264	10	0.688
NZ_CP041181_2	2.14\|961331\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	961331-961362	32	NZ_CP046067	Vibrio sp. THAF191d plasmid pTHAF191d_c, complete sequence	110732-110763	10	0.688
NZ_CP041181_2	2.14\|961331\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	961331-961362	32	NZ_CP009266	Vibrio coralliilyticus strain OCN014 plasmid pOCN014, complete sequence	36435-36466	10	0.688
NZ_CP041181_2	2.14\|961331\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	961331-961362	32	NZ_CP045357	Vibrio sp. THAF64 plasmid pTHAF64_b, complete sequence	217923-217954	10	0.688
NZ_CP041181_2	2.14\|961331\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	961331-961362	32	MN693596	Marine virus AFVG_25M324, complete genome	45600-45631	10	0.688
NZ_CP041181_3	3.12\|978815\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	978815-978846	32	NZ_CP030922	Escherichia coli strain KL53 plasmid pKL53-S, complete sequence	29059-29090	11	0.656
NZ_CP041181_3	3.12\|978815\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	978815-978846	32	NZ_CP042584	Escherichia coli strain LD91-1 plasmid pLD91-1-76kb, complete sequence	20787-20818	11	0.656
NZ_CP041181_3	3.14\|978937\|32\|NZ_CP041181\|PILER-CR,CRISPRCasFinder,CRT	978937-978968	32	NZ_CP051164	Geobacillus subterraneus strain CPW16 plasmid pBsrF30, complete sequence	7333-7364	11	0.656

1. spacer 3.8|978571|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026270 (Klebsiella oxytoca strain KONIH4 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.969

agtgtccacactgcggcgctgaaaaatgcaac	CRISPR spacer
agtgtccgcactgcggcgctgaaaaatgcaac	Protospacer
*******.************************

2. spacer 3.1|978144|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 2, identity: 0.938

agcacacattgtgtgacggtcgccgtctggtt	CRISPR spacer
aacacacattgtgcgacggtcgccgtctggtt	Protospacer
*.***********.******************

3. spacer 2.1|960537|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to MT374854 (Yersinia phage vB_YpM_6, complete genome) position: , mismatch: 3, identity: 0.906

tgtaaccactgcgatatgggcgatgacacaaa	CRISPR spacer
tgtaaccactgcgatatgggcgatgacacggc	Protospacer
*****************************..

4. spacer 2.1|960537|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to MT374853 (Yersinia phage vB_YpM_5, complete genome) position: , mismatch: 3, identity: 0.906

tgtaaccactgcgatatgggcgatgacacaaa	CRISPR spacer
tgtaaccactgcgatatgggcgatgacacggc	Protospacer
*****************************..

5. spacer 2.1|960537|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to AF083977 (Bacteriophage Mu, complete genome) position: , mismatch: 3, identity: 0.906

tgtaaccactgcgatatgggcgatgacacaaa	CRISPR spacer
tgcaaccactgcgatatgggcgatgacacagc	Protospacer
**.***************************.

6. spacer 2.1|960537|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to M64097 (Bacteriophage Mu left end) position: , mismatch: 3, identity: 0.906

tgtaaccactgcgatatgggcgatgacacaaa	CRISPR spacer
tgcaaccactgcgatatgggcgatgacacagc	Protospacer
**.***************************.

7. spacer 2.1|960537|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to NC_000929 (Enterobacteria phage Mu, complete genome) position: , mismatch: 3, identity: 0.906

tgtaaccactgcgatatgggcgatgacacaaa	CRISPR spacer
tgcaaccactgcgatatgggcgatgacacagc	Protospacer
**.***************************.

8. spacer 2.1|960537|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to NC_013594 (Escherichia phage D108, complete genome) position: , mismatch: 4, identity: 0.875

tgtaaccactgcgatatgggcgatgacacaaa	CRISPR spacer
tgcaaccactgcgatatgggcgatgacacggc	Protospacer
**.**************************..

9. spacer 2.1|960537|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to KP010268 (Enterobacteria phage SfMu, complete genome) position: , mismatch: 4, identity: 0.875

tgtaaccactgcgatatgggcgatgacacaaa	CRISPR spacer
tgcaaccactgcgatatgggcgatgacacggc	Protospacer
**.**************************..

10. spacer 2.1|960537|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to LR595867 (Escherichia virus Mu_3F6 genome assembly, chromosome: 1) position: , mismatch: 4, identity: 0.875

tgtaaccactgcgatatgggcgatgacacaaa	CRISPR spacer
tgcaaccactgcgatatgggcgatgacacggc	Protospacer
**.**************************..

11. spacer 2.1|960537|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to MT374852 (Yersinia phage vB_YpM_3, complete genome) position: , mismatch: 4, identity: 0.875

tgtaaccactgcgatatgggcgatgacacaaa	CRISPR spacer
tgcaaccactgcgatatgggcgatgacacggc	Protospacer
**.**************************..

12. spacer 2.1|960537|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to MT374856 (Yersinia phage vB_YpM_23, complete genome) position: , mismatch: 4, identity: 0.875

tgtaaccactgcgatatgggcgatgacacaaa	CRISPR spacer
tgcaaccactgcgatatgggcgatgacacggc	Protospacer
**.**************************..

13. spacer 2.1|960537|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to MT591577 (Yersinia phage vB_YpM_Tongde, complete genome) position: , mismatch: 4, identity: 0.875

tgtaaccactgcgatatgggcgatgacacaaa	CRISPR spacer
tgcaaccactgcgatatgggcgatgacacggc	Protospacer
**.**************************..

14. spacer 2.2|960598|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054618 (Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.844

cgggaagcgcagcagaacgcccggtcgcagcg-	CRISPR spacer
cgcgaaccgcagcagaacgcccgg-cgcttcgg	Protospacer
** *** ***************** ***  **

15. spacer 3.7|978510|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to CP053333 (Salmonella enterica subsp. diarizonae serovar 47:k:z35 strain 2009K1094 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

agcgcgtca--ggaacgtttctggggtggcctga	CRISPR spacer
--tgcggcaatggaacggttctggggtagcctga	Protospacer
  .*** **  ****** *********.******

16. spacer 3.7|978510|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to CP053333 (Salmonella enterica subsp. diarizonae serovar 47:k:z35 strain 2009K1094 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

agcgcgtca--ggaacgtttctggggtggcctga	CRISPR spacer
--tgcggcaatggaacggttctggggtagcctga	Protospacer
  .*** **  ****** *********.******

17. spacer 3.7|978510|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022660 (Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence) position: , mismatch: 6, identity: 0.812

agcgcgtca--ggaacgtttctggggtggcctga	CRISPR spacer
--tgcggcaatggaacggttctggggtagcctga	Protospacer
  .*** **  ****** *********.******

18. spacer 3.7|978510|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045061 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence) position: , mismatch: 6, identity: 0.812

agcgcgtca--ggaacgtttctggggtggcctga	CRISPR spacer
--tgcggcaatggaacggttctggggtagcctga	Protospacer
  .*** **  ****** *********.******

19. spacer 3.7|978510|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045054 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence) position: , mismatch: 6, identity: 0.812

agcgcgtca--ggaacgtttctggggtggcctga	CRISPR spacer
--tgcggcaatggaacggttctggggtagcctga	Protospacer
  .*** **  ****** *********.******

20. spacer 3.7|978510|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045058 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence) position: , mismatch: 6, identity: 0.812

agcgcgtca--ggaacgtttctggggtggcctga	CRISPR spacer
--tgcggcaatggaacggttctggggtagcctga	Protospacer
  .*** **  ****** *********.******

21. spacer 2.2|960598|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011808 (Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-1, complete sequence) position: , mismatch: 7, identity: 0.781

cgggaagcgcagcagaacgcccggtcgcagcg	CRISPR spacer
ttgtccgcgcagcagatcccccggtcgcagcg	Protospacer
. *   ********** * *************

22. spacer 2.5|960781|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to MT162468 (Synechococcus phage S-H25, complete genome) position: , mismatch: 7, identity: 0.781

acgatccagatatttggctggatgcaatcggt-	CRISPR spacer
ccgatccagatattatgctggatg-gattgtta	Protospacer
 *************  ******** .**.* *

23. spacer 2.10|961087|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR594663 (Variovorax sp. RA8 plasmid 2) position: , mismatch: 7, identity: 0.781

ccgttgatcagaacggcaacgaacgcacgtac	CRISPR spacer
acgtggtggagatcggcaacgaacgcaagtac	Protospacer
 *** *   *** ************** ****

24. spacer 3.15|978998|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023073 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666d, complete sequence) position: , mismatch: 7, identity: 0.781

tttgaaatcgctattcttattgctgtagcagt	CRISPR spacer
ttcgccgtcgctgtttttattgctgtagcact	Protospacer
**.*  .*****.**.************** *

25. spacer 2.7|960903|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to MN693323 (Marine virus AFVG_25M87, complete genome) position: , mismatch: 8, identity: 0.75

gcttttatgtctggtggatataacgcactgaa	CRISPR spacer
gctcttatggctggtggatataatggatcaac	Protospacer
***.***** *************.* *...*

26. spacer 2.10|961087|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to MT108725 (Pseudomonas phage Epa5, complete genome) position: , mismatch: 8, identity: 0.75

ccgttgatcagaacggcaacgaacgcacgtac	CRISPR spacer
acgtcgatcggaacggcaacgaactgaccttg	Protospacer
 ***.****.**************  ** *

27. spacer 2.12|961209|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049914 (Vibrio sp. HDW18 plasmid p_unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

----ccatttttgatcatctcctccagcctgctgag	CRISPR spacer
ggtaaca----cgatcgtctcttccagcctgctgag	Protospacer
     **    .****.****.**************

28. spacer 2.12|961209|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to NC_018688 (Bacillus thuringiensis MC28 plasmid pMC319, complete sequence) position: , mismatch: 8, identity: 0.75

ccatttttgatcatctcctccagcctgctgag	CRISPR spacer
taatttttgttcatctcttccagccttatcat	Protospacer
. ******* *******.********  * *

29. spacer 3.7|978510|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 8, identity: 0.75

agcgcgtcaggaacgtttctggggtggcctga	CRISPR spacer
cgcgcgtcaggatcgttcctggggctgggcga	Protospacer
 *********** ****.******. *  .**

30. spacer 3.10|978693|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to MN908689 (Arthrobacter phage DrSierra, complete genome) position: , mismatch: 8, identity: 0.75

---ttcggagtccggatcatcattcaggataacga	CRISPR spacer
gagctc---gtccggatcagcattcaggacaaccc	Protospacer
   .**   ********** *********.***

31. spacer 3.16|979059|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026096 (Bacillus asahii strain OM18 plasmid pOM18, complete sequence) position: , mismatch: 8, identity: 0.75

cgttaa--ctaaaacgaacaaaacagggaaatca	CRISPR spacer
--ttgattctaaaacgaaaaaaacaggtaaactg	Protospacer
  **.*  ********** ******** ***...

32. spacer 2.2|960598|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 9, identity: 0.719

cgggaagcgcagcagaacgcccggtcgcagcg	CRISPR spacer
cgggaagcccagcagcacgcccgaacaggcgg	Protospacer
******** ****** *******. *. .  *

33. spacer 2.2|960598|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to NC_013858 (Azospirillum sp. B510 plasmid pAB510d, complete sequence) position: , mismatch: 9, identity: 0.719

cgggaagcgcagcagaacgcccggtcgcagcg	CRISPR spacer
cgggaagcccagcagcacgcccgaacaggcgg	Protospacer
******** ****** *******. *. .  *

34. spacer 2.3|960659|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to JN672684 (Enterobacteria phage F20, partial genome) position: , mismatch: 9, identity: 0.719

atcaccggcacgcgcgataacgggtctgatta	CRISPR spacer
aagcaggtgacgcgggataacgggtatgatta	Protospacer
*     *  ***** ********** ******

35. spacer 2.9|961026|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to KM507819 (Escherichia phage 121Q, complete genome) position: , mismatch: 9, identity: 0.719

cgtatcccgaaatcacgttcaagaaaaatccg	CRISPR spacer
tgcactgagaaatcaagttcaagaaaaaaccc	Protospacer
.*.*..  ******* ************ **

36. spacer 2.10|961087|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038392 (Escherichia coli O157:H7 strain DEC5B plasmid pDEC5B-4, complete sequence) position: , mismatch: 9, identity: 0.719

ccgttgatcagaacggcaacgaacgcacgtac	CRISPR spacer
tcgttgatcagaacgggaaggaactggcccgc	Protospacer
.*************** ** ****  .* ..*

37. spacer 2.10|961087|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027439 (Escherichia coli strain 2012C-4221 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

ccgttgatcagaacggcaacgaacgcacgtac	CRISPR spacer
tcgttgatcagaacgggaaggaactggcccgc	Protospacer
.*************** ** ****  .* ..*

38. spacer 2.10|961087|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to MT108731 (Pseudomonas phage Epa43, complete genome) position: , mismatch: 9, identity: 0.719

ccgttgatcagaacggcaacgaacgcacgtac	CRISPR spacer
acgtcgatcggaacggcaacgaactgaccctg	Protospacer
 ***.****.**************  ** .

39. spacer 3.6|978449|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017782 (Rhodobacter sp. LPB0142 plasmid pEJ01, complete sequence) position: , mismatch: 9, identity: 0.719

ggtgttactgatggtggggcgctggatgaggc	CRISPR spacer
aggatgcgcgagggtcgggcgctggatgaggc	Protospacer
.* .*   .** *** ****************

40. spacer 3.11|978754|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013345 (Sphingopyxis macrogoltabida strain 203N plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

aaatcgcgcggcgatcgactcaaggcggcgac-	CRISPR spacer
gtggcgcgcggcgatcgcctcgaggc-gcgctg	Protospacer
. . ************* ***.**** *** .

41. spacer 2.9|961026|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to NC_028822 (Escherichia phage P483, complete genome) position: , mismatch: 10, identity: 0.688

cgtatcccgaaatcacgttcaagaaaaatccg	CRISPR spacer
ccatcatggaaatcacattcaagacaaatcca	Protospacer
*   . . ********.******* ******.

42. spacer 2.14|961331|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046164 (Vibrio sp. THAF191c plasmid pTHAF191c_c, complete sequence) position: , mismatch: 10, identity: 0.688

gtcaaataaatatgagtgaagaagccaaagcc	CRISPR spacer
ccgtagccaatatcagtgaagatgccaaagct	Protospacer
 .  *.. ***** ******** ********.

43. spacer 2.14|961331|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046067 (Vibrio sp. THAF191d plasmid pTHAF191d_c, complete sequence) position: , mismatch: 10, identity: 0.688

gtcaaataaatatgagtgaagaagccaaagcc	CRISPR spacer
ccgtagccaatatcagtgaagatgccaaagct	Protospacer
 .  *.. ***** ******** ********.

44. spacer 2.14|961331|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009266 (Vibrio coralliilyticus strain OCN014 plasmid pOCN014, complete sequence) position: , mismatch: 10, identity: 0.688

gtcaaataaatatgagtgaagaagccaaagcc	CRISPR spacer
ccgtagccaatatcagtgaagatgccaaagct	Protospacer
 .  *.. ***** ******** ********.

45. spacer 2.14|961331|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045357 (Vibrio sp. THAF64 plasmid pTHAF64_b, complete sequence) position: , mismatch: 10, identity: 0.688

gtcaaataaatatgagtgaagaagccaaagcc	CRISPR spacer
ccgtagccaatatcagtgaagatgccaaagct	Protospacer
 .  *.. ***** ******** ********.

46. spacer 2.14|961331|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to MN693596 (Marine virus AFVG_25M324, complete genome) position: , mismatch: 10, identity: 0.688

gtcaaataaatatgagtgaagaagccaaagcc	CRISPR spacer
taggagcaaaaatgagtgaagaagcaaaagag	Protospacer
   .*..*** ************** ****

47. spacer 3.12|978815|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030922 (Escherichia coli strain KL53 plasmid pKL53-S, complete sequence) position: , mismatch: 11, identity: 0.656

aaaatcgtgagtgactatcgttctgttattgc	CRISPR spacer
ttgatcgtcagtgactatggttctgtctcaaa	Protospacer
  .***** ********* *******. . .

48. spacer 3.12|978815|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042584 (Escherichia coli strain LD91-1 plasmid pLD91-1-76kb, complete sequence) position: , mismatch: 11, identity: 0.656

aaaatcgtgagtgactatcgttctgttattgc	CRISPR spacer
ttgatcgtcagtgactatggttctgtctcaaa	Protospacer
  .***** ********* *******. . .

49. spacer 3.14|978937|32|NZ_CP041181|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051164 (Geobacillus subterraneus strain CPW16 plasmid pBsrF30, complete sequence) position: , mismatch: 11, identity: 0.656

tggccggggaaacaaggaaagtcctggttttt	CRISPR spacer
gatttagggaaacaaagaaagtcctgattaaa	Protospacer
 . ...*********.**********.**

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

628220 : 683575

Cronobacter_phage(65.0%)

holin,integrase,capsid,terminase,head,plate,tRNA,portal,tail

attL 637421:637442|attR 685884:685905

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023226578.1\|628220_628619_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_000031219.1\|628621_628927_-	DUF883 domain-containing protein	NA	NA	NA	NA
WP_000877297.1\|628968_629337_-	DUF1090 domain-containing protein	NA	NA	NA	NA
WP_000917512.1\|629481_629865_-	EnvZ/OmpR regulon moderator MzrA	NA	NA	NA	NA
WP_000422141.1\|629868_630531_-	DedA family protein	NA	NA	NA	NA
WP_000235363.1\|630980_632225_-	serine/threonine transporter SstT	NA	NA	NA	NA
WP_001098833.1\|632479_633448_-	TerC family protein	I7HPH5	Enterobacteria_phage	5.0e-39	34.9
WP_023226577.1\|633717_634716_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_000951045.1\|634803_635496_-	vancomycin high temperature exclusion protein	NA	NA	NA	NA
WP_000202966.1\|635647_636145_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_023226576.1\|636230_637367_+	23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA	NA	NA	NA
637421:637442	attL	NA	NA	NA	NA
WP_023226575.1\|637447_639466_-	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_001520281.1\|639636_641016_-	putrescine aminotransferase	A0A1V0SKB7	Klosneuvirus	2.9e-32	29.0
WP_064441647.1\|641445_642966_+	PAS domain-containing methyl-accepting chemotaxis protein	A0A1B0V854	Salmonella_phage	8.4e-33	47.8
WP_089541743.1\|645077_645725_-	PadR family transcriptional regulator	NA	NA	NA	NA
WP_023226573.1\|645956_646724_+	siderophore-interacting protein	NA	NA	NA	NA
WP_001748617.1\|646934_647972_-\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	7.1e-124	65.6
WP_001748619.1\|647958_648852_-	hypothetical protein	NA	NA	NA	NA
WP_001748620.1\|648880_649459_-	phage repressor protein	A0A218M4J1	Erwinia_phage	1.5e-27	39.5
WP_001247709.1\|649578_649800_+	hypothetical protein	NA	NA	NA	NA
WP_000460877.1\|649830_650334_+	phage regulatory CII family protein	F1BUN6	Cronobacter_phage	3.5e-60	72.5
WP_000643375.1\|650343_650571_+	DUF2724 domain-containing protein	NA	NA	NA	NA
WP_024139063.1\|650560_650986_+	hypothetical protein	F1BUN5	Cronobacter_phage	2.9e-23	49.6
WP_001748623.1\|650985_651387_+	hypothetical protein	F1BUN2	Cronobacter_phage	1.9e-48	66.9
WP_071592686.1\|651533_651710_+	DUF2732 family protein	NA	NA	NA	NA
WP_000422609.1\|651700_652297_+	3'-5' exonuclease	A0A1S6L012	Salmonella_phage	3.8e-74	72.3
WP_000153512.1\|652293_652623_+	DUF3850 domain-containing protein	Q2P9X4	Enterobacteria_phage	3.0e-12	45.2
WP_001748626.1\|652612_653473_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	F1BUN1	Cronobacter_phage	4.9e-131	82.4
WP_064441649.1\|653469_655491_+	replication endonuclease	F1BUM9	Cronobacter_phage	7.9e-297	74.6
WP_001748628.1\|655610_655817_+	hypothetical protein	NA	NA	NA	NA
WP_001552031.1\|655790_656114_-	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	8.0e-50	92.3
WP_001650413.1\|656110_657172_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	3.0e-162	77.3
WP_051129117.1\|657168_658944_-\|terminase	terminase	F1BUM5	Cronobacter_phage	7.5e-291	83.3
WP_000018798.1\|659104_659905_+\|capsid	GPO family capsid scaffolding protein	F1BUM4	Cronobacter_phage	3.2e-76	54.8
WP_000550496.1\|659966_660989_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	1.1e-158	81.2
WP_001218534.1\|660992_661697_+\|terminase	terminase	F1BUM0	Cronobacter_phage	1.0e-86	67.4
WP_000398492.1\|661700_661895_+	hypothetical protein	Q8W634	Enterobacteria_phage	3.3e-11	58.6
WP_023181179.1\|661991_662444_+\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	2.3e-63	81.3
WP_000084220.1\|662440_662947_+\|tail	phage tail protein	F1BUL7	Cronobacter_phage	5.2e-64	69.8
WP_000560081.1\|662943_663651_+	hypothetical protein	F1BUL6	Cronobacter_phage	3.4e-101	76.5
WP_000220205.1\|663647_664775_+	DUF2586 family protein	F1BUL5	Cronobacter_phage	3.3e-175	83.7
WP_000166743.1\|664771_665227_+	DUF2597 family protein	F1BUL4	Cronobacter_phage	1.5e-57	72.2
WP_001154425.1\|665236_665530_+\|holin	phage holin family protein	C7BGD7	Burkholderia_phage	1.3e-14	46.2
WP_000175560.1\|665526_665868_+	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	2.2e-50	91.1
WP_000376374.1\|665867_666200_+	hypothetical protein	F1BUL2	Cronobacter_phage	2.0e-35	70.0
WP_000411340.1\|666346_666604_+	hypothetical protein	A5X9I7	Aeromonas_virus	3.6e-21	63.4
WP_051129153.1\|666791_668762_+\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	3.6e-270	69.8
WP_001002797.1\|668758_669088_+	DUF2590 family protein	F1BUK8	Cronobacter_phage	3.8e-39	72.4
WP_054175278.1\|669084_670269_+\|plate	baseplate J/gp47 family protein	F1BUK6	Cronobacter_phage	1.1e-178	78.4
WP_001001824.1\|670261_670849_+	hypothetical protein	F1BUK5	Cronobacter_phage	1.1e-89	82.1
WP_054175279.1\|670858_672871_+\|tail	phage tail protein	F1BUK3	Cronobacter_phage	2.1e-148	81.2
WP_001215677.1\|672873_673404_+\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	4.4e-13	32.4
WP_000267954.1\|673393_674119_+	hypothetical protein	F1BUK1	Cronobacter_phage	3.8e-68	56.4
WP_000200791.1\|674090_674636_+	hypothetical protein	F1BUJ9	Cronobacter_phage	3.5e-58	71.4
WP_089541748.1\|674635_676339_+	hypothetical protein	F1BUJ7	Cronobacter_phage	2.9e-223	81.3
WP_001128281.1\|676926_677088_-	hypothetical protein	NA	NA	NA	NA
WP_000237776.1\|677510_678017_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
WP_001519776.1\|678140_679988_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
WP_000918865.1\|680137_681883_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.1e-72	38.4
WP_001144069.1\|682118_682334_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_023200351.1\|682561_683575_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	8.2e-109	59.5
685884:685905	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1179424 : 1260725

Cronobacter_phage(51.22%)

integrase,holin,capsid,terminase,head,plate,tRNA,portal,tail

attL 1187401:1187416|attR 1215091:1215106

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000469807.1\|1179424_1180192_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000065257.1\|1180232_1180580_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_001030985.1\|1180735_1181956_-	diguanylate cyclase DgcN	A0A2K8I9Y5	Pseudomonas_phage	5.8e-08	36.2
WP_089541747.1\|1181948_1182467_-	YfiR family protein	NA	NA	NA	NA
WP_001168062.1\|1182906_1183977_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	51.8
WP_023227266.1\|1183986_1185108_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_000210991.1\|1185165_1186074_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_000200077.1\|1186034_1187195_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_010989056.1\|1187294_1187342_-	hypothetical protein	NA	NA	NA	NA
1187401:1187416	attL	NA	NA	NA	NA
WP_054175282.1\|1187505_1188498_-\|integrase	tyrosine-type recombinase/integrase	A0A0F7LBR0	Escherichia_phage	6.1e-109	58.5
WP_000085723.1\|1188564_1188864_-	helix-turn-helix domain-containing protein	Q1JS21	Enterobacteria_phage	3.8e-22	53.2
WP_002954289.1\|1188972_1189311_+	phage regulatory protein	NA	NA	NA	NA
WP_000645096.1\|1189336_1189669_+	hypothetical protein	NA	NA	NA	NA
WP_000681786.1\|1189678_1190248_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	1.2e-43	46.8
WP_000922120.1\|1190250_1190469_+	hypothetical protein	NA	NA	NA	NA
WP_054175272.1\|1190507_1193165_+	toprim domain-containing protein	A0A077K8T2	Ralstonia_phage	7.1e-245	47.6
WP_001264830.1\|1193192_1193462_-	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	5.1e-34	78.4
WP_054175273.1\|1193515_1194535_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	2.5e-134	67.8
WP_054175274.1\|1194531_1196316_-\|terminase	terminase	F1BUM5	Cronobacter_phage	1.9e-246	69.5
WP_023375469.1\|1196526_1197363_+\|capsid	capsid scaffolding protein	F1BUM4	Cronobacter_phage	3.6e-46	52.3
WP_001176503.1\|1197397_1198426_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	3.7e-133	71.6
WP_001177276.1\|1198437_1199136_+\|terminase	terminase	F1BUM0	Cronobacter_phage	3.6e-63	52.6
WP_000491223.1\|1199234_1199687_+\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	1.2e-48	64.7
WP_000080871.1\|1199683_1200166_+\|tail	phage tail protein	F1BUL7	Cronobacter_phage	2.3e-37	48.7
WP_001534848.1\|1200162_1200867_+	hypothetical protein	F1BUL6	Cronobacter_phage	1.8e-70	59.9
WP_001748058.1\|1200863_1201991_+	DUF2586 family protein	F1BUL5	Cronobacter_phage	2.1e-174	83.5
WP_054175275.1\|1201987_1202443_+	DUF2597 family protein	F1BUL4	Cronobacter_phage	2.3e-58	70.9
WP_001154426.1\|1202455_1202752_+\|holin	phage holin family protein	C7BGD7	Burkholderia_phage	2.4e-16	48.2
WP_054175276.1\|1202748_1203090_+	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	7.6e-51	93.1
WP_054175277.1\|1203089_1203422_+	hypothetical protein	F1BUL2	Cronobacter_phage	9.7e-35	69.1
WP_000411500.1\|1203568_1203826_+	hypothetical protein	A5X9I7	Aeromonas_virus	2.3e-20	61.0
WP_000811098.1\|1204013_1205981_+\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	4.3e-271	70.7
WP_001002797.1\|1205977_1206307_+	DUF2590 family protein	F1BUK8	Cronobacter_phage	3.8e-39	72.4
WP_054175278.1\|1206303_1207488_+\|plate	baseplate J/gp47 family protein	F1BUK6	Cronobacter_phage	1.1e-178	78.4
WP_001001824.1\|1207480_1208068_+	hypothetical protein	F1BUK5	Cronobacter_phage	1.1e-89	82.1
WP_054175279.1\|1208077_1210090_+\|tail	phage tail protein	F1BUK3	Cronobacter_phage	2.1e-148	81.2
WP_001215677.1\|1210092_1210623_+\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	4.4e-13	32.4
WP_054175280.1\|1210612_1211338_+	hypothetical protein	F1BUK1	Cronobacter_phage	6.6e-68	56.4
WP_000200789.1\|1211309_1211855_+	hypothetical protein	F1BUJ9	Cronobacter_phage	3.2e-59	72.0
WP_089541748.1\|1211854_1213558_+	hypothetical protein	F1BUJ7	Cronobacter_phage	2.9e-223	81.3
WP_001748131.1\|1214591_1214978_-	hypothetical protein	NA	NA	NA	NA
WP_000178449.1\|1215135_1215474_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
1215091:1215106	attR	NA	NA	NA	NA
WP_000197660.1\|1215745_1216483_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000079130.1\|1216614_1217595_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000992640.1\|1217591_1218323_+	polyphenol oxidase	NA	NA	NA	NA
WP_001235094.1\|1218452_1221026_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	9.0e-128	35.6
WP_023227274.1\|1226974_1227430_+	DUF4385 domain-containing protein	E3SMI8	Prochlorococcus_phage	3.9e-34	50.0
WP_000807818.1\|1227533_1228835_+	MFS transporter	Q6JIH2	Burkholderia_virus	1.2e-43	30.4
WP_001264473.1\|1228831_1229155_-	YfiM family lipoprotein	NA	NA	NA	NA
WP_000949286.1\|1229199_1230555_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_000082642.1\|1230669_1233330_-	protein lysine acetyltransferase	NA	NA	NA	NA
WP_023227275.1\|1233383_1234064_-	DTW domain-containing protein	NA	NA	NA	NA
WP_023227276.1\|1234136_1234556_-	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	1.2e-16	40.6
WP_000997368.1\|1234759_1235797_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_000179978.1\|1235912_1236602_-	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	4.6e-55	49.5
WP_000627811.1\|1236920_1237304_+	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	6.1e-33	74.0
WP_023227277.1\|1237365_1237953_-	cysteine/O-acetylserine transporter	NA	NA	NA	NA
WP_023227278.1\|1238055_1238955_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_023227279.1\|1238972_1240307_-	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.6e-43	29.7
WP_000083338.1\|1240436_1241174_+\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA
WP_023227280.1\|1241158_1242781_-	L-aspartate oxidase	NA	NA	NA	NA
WP_014344135.1\|1243044_1243209_+	rpoE leader peptide RseD	NA	NA	NA	NA
WP_000003307.1\|1243205_1243781_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
WP_001168374.1\|1243812_1244463_+	anti-sigma-E factor RseA	NA	NA	NA	NA
WP_000812021.1\|1244462_1245419_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
WP_000589049.1\|1245415_1245895_+	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_000790154.1\|1246146_1247946_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	7.2e-23	24.9
WP_000002559.1\|1247962_1248937_+	signal peptidase I	NA	NA	NA	NA
WP_001068341.1\|1249210_1249891_+	ribonuclease III	A0A2K9L5P0	Tupanvirus	7.4e-21	31.8
WP_000102230.1\|1249887_1250793_+	GTPase Era	NA	NA	NA	NA
WP_000399380.1\|1250804_1251533_+	DNA repair protein RecO	NA	NA	NA	NA
WP_000818964.1\|1251544_1252276_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_000986043.1\|1252275_1252656_+	holo-ACP synthase	NA	NA	NA	NA
WP_001196291.1\|1252767_1253028_-	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	4.9e-18	53.5
WP_001022463.1\|1253065_1253992_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	3.0e-09	24.4
WP_001276364.1\|1254107_1255304_+	OFA family MFS transporter	NA	NA	NA	NA
WP_023227281.1\|1255325_1256243_+	oxidoreductase	NA	NA	NA	NA
WP_000995703.1\|1256280_1257129_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_001048531.1\|1257244_1258138_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_000361660.1\|1258148_1259510_+	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_000253558.1\|1259513_1260149_+	phosphatidylglycerophosphatase C	NA	NA	NA	NA
WP_023216173.1\|1260173_1260725_+\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA

DBSCAN-SWA_3

1472460 : 1479321

Salmonella_virus(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106417237.1\|1472460_1472607_+	hypothetical protein	A0A1R3Y5S2	Salmonella_virus	1.1e-14	73.9
WP_109166850.1\|1472622_1472766_+	hypothetical protein	A0A1R3Y5S2	Salmonella_virus	2.6e-13	85.4
WP_023226601.1\|1473755_1475678_-	acyltransferase	A0A1R3Y5Q6	Salmonella_virus	3.9e-301	77.8
WP_000703601.1\|1475684_1475951_-	glycosyltransferase	A8CG95	Salmonella_phage	3.3e-25	79.5
WP_023226602.1\|1475919_1476309_-	GtrA family protein	A0A192Y6N5	Salmonella_phage	1.3e-59	97.5
WP_001067855.1\|1476420_1477125_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001590337.1\|1478379_1479321_-	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	4.1e-147	87.8

DBSCAN-SWA_4

1710889 : 1720060

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569166.1\|1710889_1711837_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2
WP_000824854.1\|1711820_1712552_+	ABC transporter permease	NA	NA	NA	NA
WP_001261696.1\|1712532_1712640_-	protein YohO	NA	NA	NA	NA
WP_001240418.1\|1712699_1713431_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_000272850.1\|1713653_1715339_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
WP_000598637.1\|1715335_1716055_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950415.1\|1716101_1716569_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	6.7e-74	89.7
WP_023226723.1\|1716625_1717156_-	YehR family lipoprotein	NA	NA	NA	NA
WP_000703137.1\|1717327_1717786_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_023226722.1\|1718026_1720060_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	6.1e-55	26.9

DBSCAN-SWA_5

1833937 : 1844444

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023226691.1\|1833937_1835341_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	26.5
WP_000981469.1\|1835518_1836412_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_000697846.1\|1836788_1837874_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
WP_023226690.1\|1837873_1838773_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.8e-30	36.3
WP_023226689.1\|1838820_1839699_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.1e-108	65.5
WP_000973709.1\|1839699_1840251_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-52	58.0
WP_023200991.1\|1840256_1841231_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000648783.1\|1841246_1842020_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000565903.1\|1842024_1843104_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.7e-16	24.5
WP_000126349.1\|1843130_1844444_+	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_6

1954566 : 1965856

Burkholderia_phage(25.0%)

integrase

attL 1948820:1948835|attR 1963167:1963182

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1948820:1948835	attL	NA	NA	NA	NA
WP_023226634.1\|1954566_1955748_+	AAA family ATPase	C7BGE8	Burkholderia_phage	2.4e-35	26.9
WP_023226633.1\|1955748_1956495_+	HNH endonuclease	NA	NA	NA	NA
WP_023226632.1\|1956596_1957853_-\|integrase	site-specific integrase	A0A077KET4	Ralstonia_phage	3.4e-80	41.3
WP_023226631.1\|1958333_1958495_+	hypothetical protein	NA	NA	NA	NA
WP_000394197.1\|1958621_1959041_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_023194544.1\|1959043_1960312_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	3.8e-228	92.7
WP_000208509.1\|1960766_1960979_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_024131109.1\|1960989_1961178_+	hypothetical protein	NA	NA	NA	NA
WP_024154957.1\|1961436_1962615_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	8.6e-110	57.2
WP_023227458.1\|1963265_1963577_+	hypothetical protein	NA	NA	NA	NA
1963167:1963182	attR	NA	NA	NA	NA
WP_023227459.1\|1963656_1964352_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	1.6e-07	27.1
WP_001157305.1\|1964425_1965856_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_7

2146605 : 2185761

Shigella_phage(37.5%)

integrase,transposase,protease

attL 2163042:2163058|attR 2177629:2177645

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023227614.1\|2146605_2147202_-\|protease	hydrogenase 1 maturation protease	NA	NA	NA	NA
WP_000147031.1\|2147198_2147930_-	Ni/Fe-hydrogenase b-type cytochrome subunit	NA	NA	NA	NA
WP_000070982.1\|2147948_2149742_-	Ni/Fe-hydrogenase large subunit	NA	NA	NA	NA
WP_023227615.1\|2149738_2150857_-	hydrogenase 1 small subunit	NA	NA	NA	NA
WP_023227616.1\|2151350_2152616_+	DUF4427 domain-containing protein	NA	NA	NA	NA
WP_089541817.1\|2155178_2156406_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	2.7e-170	95.7
WP_000136607.1\|2157844_2160355_+	hypothetical protein	NA	NA	NA	NA
WP_001442952.1\|2160358_2162923_+	hypothetical protein	NA	NA	NA	NA
2163042:2163058	attL	NA	NA	NA	NA
WP_000716184.1\|2163229_2163544_-	hypothetical protein	NA	NA	NA	NA
WP_001232453.1\|2163555_2164074_-	hypothetical protein	NA	NA	NA	NA
WP_000108266.1\|2164127_2164655_-	hypothetical protein	NA	NA	NA	NA
WP_001442951.1\|2164667_2164937_-	helix-turn-helix domain-containing protein	M1PVU4	Vibrio_phage	4.1e-15	61.9
WP_000093666.1\|2165057_2165438_+	hypothetical protein	NA	NA	NA	NA
WP_000174655.1\|2165595_2166138_+	hypothetical protein	NA	NA	NA	NA
WP_000142750.1\|2166160_2166649_+	DNA repair protein RadC	NA	NA	NA	NA
WP_050516501.1\|2166776_2167172_+	DUF2787 family protein	NA	NA	NA	NA
WP_019841938.1\|2167232_2167592_+	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_000744655.1\|2167701_2168319_+	DUF905 family protein	NA	NA	NA	NA
WP_000213673.1\|2168395_2169343_+\|integrase	site-specific integrase	A0A1B1P7C7	Bacillus_phage	6.2e-10	31.3
WP_000870315.1\|2169556_2170003_-	hypothetical protein	NA	NA	NA	NA
WP_000999224.1\|2170267_2170462_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_000468111.1\|2170463_2171336_+	hypothetical protein	NA	NA	NA	NA
WP_165488789.1\|2171545_2172774_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	3.2e-176	98.3
WP_131186985.1\|2173030_2176933_+	hypothetical protein	NA	NA	NA	NA
WP_001087212.1\|2177254_2178940_-	ADP-ribosylglycohydrolase family protein	NA	NA	NA	NA
2177629:2177645	attR	NA	NA	NA	NA
WP_000151475.1\|2178949_2179615_-	DUF4433 domain-containing protein	NA	NA	NA	NA
WP_000699006.1\|2179615_2181013_-	hypothetical protein	A0A2H4UW05	Bodo_saltans_virus	6.6e-08	24.8
WP_080229793.1\|2182930_2183710_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.1e-137	98.8
WP_069067343.1\|2184351_2184690_+\|transposase	IS3 family transposase	U5P4I9	Shigella_phage	2.4e-33	92.5
WP_001443045.1\|2184609_2185761_-\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	4.1e-40	35.0

DBSCAN-SWA_8

2280093 : 2285905

Escherichia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000230462.1\|2280093_2280900_-	peptide ABC transporter ATP-binding protein SapF	G3M9Y6	Bacillus_virus	4.6e-14	27.4
WP_001128869.1\|2280901_2281894_-	peptide ABC transporter ATP-binding protein SapD	NA	NA	NA	NA
WP_001146150.1\|2281893_2282784_-	peptide ABC transporter permease SapC	NA	NA	NA	NA
WP_023227163.1\|2282907_2283309_+	DUF4102 domain-containing protein	K7PGY1	Enterobacteria_phage	3.8e-33	58.4
WP_170967352.1\|2283608_2284493_-	hypothetical protein	A0A0P0ZCT1	Stx2-converting_phage	5.6e-37	38.5
WP_023227161.1\|2284802_2285072_+	recombination protein NinG	S4TSR3	Salmonella_phage	1.8e-26	92.1
WP_071525147.1\|2285426_2285567_+	pertussis toxin subunit	A0A0U2KD26	Escherichia_phage	1.1e-08	74.3
WP_071601154.1\|2285605_2285905_+	pertussis toxin subunit	A0A0U2KD26	Escherichia_phage	2.2e-14	57.1

DBSCAN-SWA_9

2749846 : 2757309

Escherichia_phage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000497451.1\|2749846_2750086_+	virulence protein MsgA	K7P6H1	Enterobacteria_phage	8.5e-33	88.6
WP_023226907.1\|2750959_2751769_+	cytolethal distending toxin S-CDT	A5LH53	Enterobacteria_phage	9.2e-63	50.0
WP_001277616.1\|2751841_2752219_+	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
WP_023226906.1\|2752366_2752909_-	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	1.1e-70	66.5
WP_023218771.1\|2753100_2753829_-	pertussis-like toxin subunit ArtA	A0A0U2KD26	Escherichia_phage	1.4e-62	53.3
WP_023226904.1\|2753845_2754259_-	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	1.4e-19	38.6
WP_023226903.1\|2755209_2756334_-	type III secretion system effector SopF	NA	NA	NA	NA
WP_000502119.1\|2756850_2757309_-\|transposase	IS200/IS605-like element IS200F family transposase	I4AZI8	Saccharomonospora_phage	1.0e-13	31.5

DBSCAN-SWA_10

3581742 : 3627982

Enterobacteria_phage(73.13%)

protease,coat,integrase,terminase,transposase,lysis,portal

attL 3581409:3581454|attR 3624091:3624136

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3581409:3581454	attL	NA	NA	NA	NA
WP_000915528.1\|3581742_3582105_+	GtrA family protein	A0A192Y6N5	Salmonella_phage	5.0e-61	100.0
WP_000703639.1\|3582101_3583034_+	glycosyltransferase family 2 protein	A8CG95	Salmonella_phage	5.5e-176	100.0
WP_000671496.1\|3583023_3584481_+	glucosyltransferase domain-containing protein	A8CG94	Salmonella_phage	1.3e-240	100.0
WP_000129933.1\|3584539_3586543_-	endorhamnosidase	Q76H47	Enterobacteria_phage	0.0e+00	100.0
WP_000532177.1\|3586678_3586927_+	Arc family DNA-binding protein	Q76H48	Enterobacteria_phage	1.8e-38	100.0
WP_071533035.1\|3586947_3587241_-	hypothetical protein	Q76H12	Enterobacteria_phage	3.2e-50	100.0
WP_001029860.1\|3587379_3589356_-	hypothetical protein	Q76H13	Enterobacteria_phage	0.0e+00	100.0
WP_000246977.1\|3589355_3590792_-	DNA transfer protein	Q76H14	Enterobacteria_phage	7.7e-246	100.0
WP_000964904.1\|3590802_3591492_-	hypothetical protein	A0A2H5BFK5	Salmonella_phage	2.9e-118	100.0
WP_000627593.1\|3591494_3591950_-	DUF2824 family protein	Q76H16	Enterobacteria_phage	1.8e-87	100.0
WP_000774917.1\|3591949_3592651_-	hypothetical protein	Q76H17	Enterobacteria_phage	1.7e-76	100.0
WP_001122420.1\|3592654_3594073_-	packaged DNA stabilization protein gp10	Q76H18	Enterobacteria_phage	6.4e-277	100.0
WP_001166103.1\|3594032_3594533_-	packaged DNA stabilization protein p27	Q76H19	Enterobacteria_phage	4.2e-90	100.0
WP_000538670.1\|3594516_3595077_-	hypothetical protein	C6ZR11	Salmonella_phage	9.8e-104	100.0
WP_001196937.1\|3595117_3596410_-\|coat	coat protein	Q76H21	Enterobacteria_phage	1.1e-243	100.0
WP_051129359.1\|3596409_3597318_-	scaffolding protein	A0A2D1GLN7	Escherichia_phage	4.3e-149	94.1
WP_051129358.1\|3597331_3599497_-\|portal	portal protein	A0A2D1GLJ6	Escherichia_phage	0.0e+00	99.6
WP_051129357.1\|3599497_3600997_-\|terminase	terminase	A0A2D1GLW6	Escherichia_phage	9.1e-306	99.4
WP_000729923.1\|3600974_3601463_-	hypothetical protein	Q76H25	Enterobacteria_phage	1.0e-88	100.0
WP_001687044.1\|3601466_3601871_-	hypothetical protein	Q76H26	Enterobacteria_phage	1.1e-67	100.0
WP_001140562.1\|3601870_3602260_-	hypothetical protein	Q76H27	Enterobacteria_phage	3.9e-75	100.0
WP_000808099.1\|3602263_3602506_-	DUF2560 family protein	Q76H60	Enterobacteria_phage	1.7e-33	100.0
WP_000877028.1\|3602728_3603259_-	KilA-N domain-containing protein	Q76H61	Enterobacteria_phage	1.3e-94	100.0
WP_001687043.1\|3603471_3603939_-\|lysis	lysis protein	Q76H63	Enterobacteria_phage	1.7e-77	100.0
WP_089541817.1\|3604356_3605585_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	2.7e-170	95.7
WP_000286100.1\|3605746_3605950_-	hypothetical protein	I6R0S9	Salmonella_phage	1.1e-33	100.0
WP_001047566.1\|3606380_3607154_-	antitermination protein	Q76H66	Enterobacteria_phage	8.1e-133	100.0
WP_000219133.1\|3607150_3607330_-	hypothetical protein	Q76H67	Enterobacteria_phage	1.9e-24	100.0
WP_000149882.1\|3607310_3607514_-	protein ninH	I6RSQ6	Salmonella_phage	7.2e-33	100.0
WP_000036320.1\|3607510_3607735_-	hypothetical protein	Q76H69	Enterobacteria_phage	6.3e-38	100.0
WP_001108073.1\|3607731_3608343_-	recombination protein NinG	Q76H70	Enterobacteria_phage	7.9e-99	100.0
WP_000950963.1\|3608335_3608512_-	protein ninF	Q76H71	Enterobacteria_phage	6.7e-27	100.0
WP_001532927.1\|3608504_3608846_-	DUF2591 family protein	Q76H72	Enterobacteria_phage	2.1e-64	100.0
WP_000113770.1\|3608848_3609025_-	NinE family protein	Q76H73	Enterobacteria_phage	1.0e-27	100.0
WP_000679703.1\|3608991_3609165_-	hypothetical protein	Q76H74	Enterobacteria_phage	2.3e-32	100.0
WP_000736891.1\|3609161_3609599_-	recombination protein NinB	Q76H49	Enterobacteria_phage	4.5e-80	100.0
WP_001036030.1\|3609672_3609942_-	hypothetical protein	Q76H50	Enterobacteria_phage	4.9e-45	100.0
WP_001248410.1\|3609938_3611315_-	AAA family ATPase	Q76H51	Enterobacteria_phage	1.9e-254	100.0
WP_000539342.1\|3611311_3612133_-	replication protein	Q76H52	Enterobacteria_phage	5.2e-154	100.0
WP_000166961.1\|3612119_3612281_-	hypothetical protein	Q76H53	Enterobacteria_phage	1.3e-21	100.0
WP_001103492.1\|3612315_3612597_-	hypothetical protein	Q76H54	Enterobacteria_phage	4.3e-44	100.0
WP_000182204.1\|3612707_3612923_-	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.3e-32	100.0
WP_000712403.1\|3613033_3613723_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.3e-126	100.0
WP_001532928.1\|3613887_3614967_+	hypothetical protein	A0A192Y6S0	Salmonella_phage	1.5e-193	100.0
WP_000834175.1\|3615005_3615209_-	hypothetical protein	A0A2H5BFH9	Salmonella_phage	2.0e-27	100.0
WP_000216178.1\|3615572_3615875_+	hypothetical protein	Q76H58	Enterobacteria_phage	9.7e-50	100.0
WP_001066179.1\|3615887_3616475_-	super-infection exclusion protein B	Q76H59	Enterobacteria_phage	1.4e-100	100.0
WP_000213982.1\|3616688_3616883_+	Restriction inhibitor protein ral	Q76H34	Enterobacteria_phage	1.9e-30	100.0
WP_072097849.1\|3616966_3617581_+	pentapeptide repeat-containing protein	Q76H35	Enterobacteria_phage	7.0e-47	94.4
WP_000713613.1\|3617614_3617902_+	hypothetical protein	Q76H36	Enterobacteria_phage	2.7e-49	100.0
WP_000776963.1\|3618177_3618492_+	Superinfection exclusion protein	Q76H37	Enterobacteria_phage	1.5e-56	100.0
WP_000141641.1\|3618576_3618735_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q76H38	Enterobacteria_phage	2.4e-23	100.0
WP_051129356.1\|3618715_3618871_+	DUF5444 family protein	I6S647	Salmonella_phage	4.7e-24	100.0
WP_000902092.1\|3618893_3619037_+	hypothetical protein	A0A2H5BFM6	Salmonella_phage	6.4e-20	100.0
WP_001046968.1\|3619033_3619741_+	recombinase	Q76H40	Enterobacteria_phage	3.1e-139	100.0
WP_001253476.1\|3619740_3620025_+	sigma-70 family RNA polymerase sigma factor	Q76H41	Enterobacteria_phage	1.4e-45	100.0
WP_001111291.1\|3620071_3620365_+	DUF2856 family protein	Q76H42	Enterobacteria_phage	1.4e-48	100.0
WP_001214777.1\|3620375_3620546_+	DUF2737 family protein	Q76H43	Enterobacteria_phage	1.6e-25	100.0
WP_000812203.1\|3620542_3621052_+	hypothetical protein	Q76H44	Enterobacteria_phage	2.8e-89	100.0
WP_071533029.1\|3621048_3621282_+	Lar family restriction alleviation protein	NA	NA	NA	NA
WP_025617570.1\|3621268_3621913_+	ead/Ea22-like family protein	Q76H45	Enterobacteria_phage	1.4e-122	99.5
WP_000371199.1\|3621912_3622197_+	DUF4752 family protein	Q76H46	Enterobacteria_phage	1.6e-49	100.0
WP_000002104.1\|3622189_3622474_+	ASCH domain-containing protein	Q76H28	Enterobacteria_phage	1.4e-50	100.0
WP_155675089.1\|3622542_3622683_+	hypothetical protein	A0A0M4QWX3	Salmonella_phage	4.2e-16	97.8
WP_000051897.1\|3622912_3624076_+\|integrase	site-specific integrase	Q76H30	Enterobacteria_phage	3.7e-230	100.0
WP_000893225.1\|3624281_3625532_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	4.7e-98	47.5
3624091:3624136	attR	NA	NA	NA	NA
WP_001285275.1\|3625543_3626647_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	6.9e-61	39.8
WP_001043667.1\|3626929_3627982_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	2.6e-113	58.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP041182

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

120040 : 181489

Escherichia_phage(31.82%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042634304.1\|120040_121120_-\|protease	cysteine protease StiP family protein	A0A172Q0S8	Acinetobacter_phage	2.8e-38	34.1
WP_001040059.1\|121121_121895_-	hypothetical protein	NA	NA	NA	NA
WP_001285478.1\|121887_123030_-	phosphoribosyltransferase domain-containing protein	A0A172Q0Y1	Acinetobacter_phage	1.7e-30	35.4
WP_001035162.1\|123039_124098_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_042634303.1\|124421_125003_+	TerD family protein	K4JRX3	Caulobacter_phage	6.3e-13	30.0
WP_001054787.1\|125002_126160_+	TerD family protein	NA	NA	NA	NA
WP_000007448.1\|126182_126638_+	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_000255079.1\|126660_127701_+	tellurium resistance membrane protein TerC	K7QKE8	Escherichia_phage	2.2e-77	48.0
WP_000116677.1\|127749_128328_+	tellurium resistance membrane protein TerD	A0A2P1N0L4	Streptomyces_phage	3.3e-06	40.0
WP_000301242.1\|128395_128971_+	TerD family protein	K4JRX3	Caulobacter_phage	8.7e-31	41.6
WP_001053338.1\|129399_130641_+	VWA domain-containing protein	NA	NA	NA	NA
WP_000077926.1\|131203_131485_-	hypothetical protein	NA	NA	NA	NA
WP_000398480.1\|131534_131726_-	hypothetical protein	NA	NA	NA	NA
WP_001151575.1\|131817_132159_-	hypothetical protein	NA	NA	NA	NA
WP_000341066.1\|132531_132924_+	hypothetical protein	NA	NA	NA	NA
WP_024136327.1\|133527_133821_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000088046.1\|133825_135151_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_000134171.1\|135211_135418_+	hypothetical protein	NA	NA	NA	NA
WP_000985911.1\|135519_135930_+	hypothetical protein	NA	NA	NA	NA
WP_001572439.1\|135942_136758_+	HNH endonuclease	G0X580	Salmonella_phage	1.1e-15	36.5
WP_001043843.1\|137011_137437_+	hypothetical protein	NA	NA	NA	NA
WP_001572440.1\|138185_138485_+	hypothetical protein	NA	NA	NA	NA
WP_032192809.1\|138797_140837_-	ATP-dependent helicase	E3T5J8	Cafeteria_roenbergensis_virus	2.5e-24	24.8
WP_001572342.1\|140833_141820_-	hypothetical protein	NA	NA	NA	NA
WP_001194555.1\|142850_143054_+	hypothetical protein	NA	NA	NA	NA
WP_001287392.1\|143395_143800_-	H-NS histone family protein	NA	NA	NA	NA
WP_000175476.1\|144297_144534_-	hypothetical protein	NA	NA	NA	NA
WP_001572344.1\|144575_145031_-	hypothetical protein	NA	NA	NA	NA
WP_000490638.1\|145090_145756_-	hypothetical protein	NA	NA	NA	NA
WP_001426317.1\|145813_146194_-	hypothetical protein	NA	NA	NA	NA
WP_000193209.1\|146836_147655_+	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_001572381.1\|147651_148857_+	hypothetical protein	NA	NA	NA	NA
WP_000078514.1\|149136_150456_-	DUF1173 family protein	NA	NA	NA	NA
WP_000220758.1\|150478_150646_-	hypothetical protein	A0A2D2W2Z9	Escherichia_phage	7.3e-07	50.9
WP_000833382.1\|150706_152134_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	3.4e-100	52.3
WP_001572389.1\|152348_152864_+	thermonuclease family protein	A0A1X6WF84	Pacmanvirus	2.1e-07	38.6
WP_000975182.1\|152866_153763_+	hypothetical protein	NA	NA	NA	NA
WP_015059496.1\|153984_154218_+	hypothetical protein	NA	NA	NA	NA
WP_001572393.1\|154879_155110_+	hypothetical protein	NA	NA	NA	NA
WP_000185304.1\|155446_155908_+	hypothetical protein	NA	NA	NA	NA
WP_000074418.1\|155937_156345_+	hypothetical protein	NA	NA	NA	NA
WP_029698059.1\|156395_156713_-	hypothetical protein	NA	NA	NA	NA
WP_031613424.1\|157089_157440_-	hypothetical protein	NA	NA	NA	NA
WP_001214976.1\|159289_159697_+	cysteine hydrolase	NA	NA	NA	NA
WP_000058717.1\|159834_160719_+	EamA family transporter	NA	NA	NA	NA
WP_001493765.1\|160750_161950_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
WP_001493764.1\|162055_162706_+	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA
WP_001067855.1\|164616_165321_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000480968.1\|165381_166218_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_001082319.1\|166217_167021_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
WP_001043265.1\|167081_167897_-	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	3.5e-09	27.6
WP_000240536.1\|168203_169055_-	replication protein	NA	NA	NA	NA
WP_001067855.1\|169810_170515_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000027057.1\|171112_171973_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001067855.1\|172557_173262_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_014839979.1\|173327_173846_+	hypothetical protein	NA	NA	NA	NA
WP_014839980.1\|173850_174267_-	fosfomycin resistance glutathione transferase FosA3	Q2LI91	Bacillus_phage	2.0e-08	35.6
WP_001067855.1\|174652_175357_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_013362812.1\|177107_178076_-\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	1.6e-186	100.0
WP_013188475.1\|178110_178986_-	class A extended-spectrum beta-lactamase CTX-M-65	A0A1B0VBP7	Salmonella_phage	6.8e-152	98.9
WP_001067855.1\|179496_180201_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000376616.1\|180318_180522_-	hypothetical protein	NA	NA	NA	NA
WP_000259031.1\|180649_181489_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041181

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP041182

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection