CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041188	Pseudarthrobacter sp. NIBRBAC000502772 chromosome, complete genome	4 crisprs	csa3,cas3,DinG,WYL,PD-DExK,DEDDh	0	2	2	0

1. NZ_CP041188

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041188_1

• CRISPR_ID: NZ_CP041188_1
• CRISPR_location: 822113-822198
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP041188_1

Consensus_repeat	Method
CCTCGGCCTTGGCACCAACCGCGGCCATGGCG	CRISPRCasFinder

spacers of NZ_CP041188_1

>1.1|822145|22|NZ_CP041188|CRISPRCasFinder
TCAACCTCGGCGCCTGCACCAA

CRISPR arrays and Neighbor proteins around NZ_CP041188_1

CRISPR arrays

The CRISPR arrays of NZ_CP041188_1

>merge|NZ_CP041188|1|822113-822198|CRISPRCasFinder
CCTCGGCCTTGGCACCAACCGCGGCCATGGCGTCAACCTCGGCGCCTGCACCAACCACGGCCATGGAGCCAACCTCGGCCTTGGCA

>NZ_CP041188|1|1|822113-822198|CRISPRCasFinder
CCTCGGCCTTGGCACCAACCGCGGCCATGGCG	TCAACCTCGGCGCCTGCACCAA
CCACGGCCATGGAGCCAACCTCGGCCTTGGCA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041188.1|WP_141139145.1|818514_818772_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP041188.1|WP_141139147.1|819603_820314_+|GAF-domain-containing-protein	unknown	unknown	gnl|CDD|379056
NZ_CP041188.1|WP_104060154.1|828771_829101_+|Lsr2-family-protein	unknown	unknown	gnl|CDD|378714
NZ_CP041188.1|WP_141139152.1|825060_825915_-|alpha/beta-fold-hydrolase	unknown	unknown	gnl|CDD|223669
NZ_CP041188.1|WP_141139148.1|820323_820605_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP041188.1|WP_141139143.1|817093_818020_+|pantoate--beta-alanine-ligase	unknown	unknown	gnl|CDD|376824
NZ_CP041188.1|WP_168223481.1|831075_831555_-|DUF1772-domain-containing-protein	unknown	unknown	gnl|CDD|227787
NZ_CP041188.1|WP_141139151.1|824195_825026_-|alpha/beta-fold-hydrolase	unknown	unknown	gnl|CDD|223669
NZ_CP041188.1|WP_141139149.1|820732_821365_+|TetR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|366102
NZ_CP041188.1|WP_141139157.1|831708_834201_+|AAA-domain-containing-protein	unknown	unknown	gnl|CDD|214361
NZ_CP041188.1|WP_141139140.1|814134_814647_+|PH-domain-containing-protein	unknown	unknown	gnl|CDD|225937
NZ_CP041188.1|WP_141139155.1|828447_828627_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP041188.1|WP_141139141.1|814643_816209_+|PH-domain-containing-protein	unknown	unknown	gnl|CDD|225962
NZ_CP041188.1|WP_141139158.1|834323_834839_+|amino-acid-N-acetyltransferase	unknown	unknown	gnl|CDD|236132
NZ_CP041188.1|WP_141139144.1|818312_818534_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP041188.1|WP_141139154.1|826912_828445_+|lysine--tRNA-ligase	unknown	unknown	gnl|CDD|234778
NZ_CP041188.1|WP_141139150.1|822638_824105_+|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl|CDD|129794
NZ_CP041188.1|WP_141139153.1|825960_826845_-|alpha/beta-fold-hydrolase	unknown	unknown	gnl|CDD|223669
NZ_CP041188.1|WP_141139146.1|818898_819594_+|GAF-domain-containing-protein	unknown	unknown	gnl|CDD|198080
NZ_CP041188.1|WP_141139142.1|816201_817092_+|DUF2520-domain-containing-protein	unknown	unknown	gnl|CDD|227782

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP041188.1|WP_141139147.1|819603_820314_+|GAF-domain-containing-protein	gnl|CDD|379056	pfam13185, GAF_2, GAF domain.	3.19034e-10
NZ_CP041188.1|WP_104060154.1|828771_829101_+|Lsr2-family-protein	gnl|CDD|378714	pfam11774, Lsr2, Lsr2. Lsr2 is a small, basic DNA-bridging protein present in Mycobacterium and related actinomycetes. It is a functional homolog of the H-NS-like proteins. H-NS proteins play a role in nucleoid organisation and also function as a pleiotropic regulator of gene expression.	2.50617e-48
NZ_CP041188.1|WP_141139152.1|825060_825915_-|alpha/beta-fold-hydrolase	gnl|CDD|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.11886e-10
NZ_CP041188.1|WP_141139143.1|817093_818020_+|pantoate--beta-alanine-ligase	gnl|CDD|376824	pfam02569, Pantoate_ligase, Pantoate-beta-alanine ligase. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (EC:6.3.2.1) catalyzes the formation of pantothenate from pantoate and alanine.	3.07313e-137
NZ_CP041188.1|WP_168223481.1|831075_831555_-|DUF1772-domain-containing-protein	gnl|CDD|227787	COG5500, COG5500, Predicted integral membrane protein [Function unknown].	8.48026e-11
NZ_CP041188.1|WP_141139151.1|824195_825026_-|alpha/beta-fold-hydrolase	gnl|CDD|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	5.53097e-13
NZ_CP041188.1|WP_141139149.1|820732_821365_+|TetR-family-transcriptional-regulator	gnl|CDD|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	1.09458e-13
NZ_CP041188.1|WP_141139140.1|814134_814647_+|PH-domain-containing-protein	gnl|CDD|225937	COG3402, COG3402, Uncharacterized conserved protein [Function unknown].	2.30649e-27
NZ_CP041188.1|WP_141139141.1|814643_816209_+|PH-domain-containing-protein	gnl|CDD|225962	COG3428, COG3428, Predicted membrane protein [Function unknown].	2.37133e-35
NZ_CP041188.1|WP_141139158.1|834323_834839_+|amino-acid-N-acetyltransferase	gnl|CDD|236132	PRK07922, PRK07922, amino-acid N-acetyltransferase.	9.31254e-109
NZ_CP041188.1|WP_141139157.1|831708_834201_+|AAA-domain-containing-protein	gnl|CDD|214361	CHL00095, clpC, Clp protease ATP binding subunit.	0
NZ_CP041188.1|WP_141139154.1|826912_828445_+|lysine--tRNA-ligase	gnl|CDD|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP041188.1|WP_141139150.1|822638_824105_+|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl|CDD|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	3.53978e-91
NZ_CP041188.1|WP_141139153.1|825960_826845_-|alpha/beta-fold-hydrolase	gnl|CDD|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	4.94799e-12
NZ_CP041188.1|WP_141139146.1|818898_819594_+|GAF-domain-containing-protein	gnl|CDD|198080	smart01012, ANTAR, ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins. The majority of the domain consists of a coiled-coil.	3.12535e-07
NZ_CP041188.1|WP_141139142.1|816201_817092_+|DUF2520-domain-containing-protein	gnl|CDD|227782	COG5495, COG5495, Uncharacterized conserved protein [Function unknown].	3.18977e-52

Protein sequences

>NZ_CP041188.1|WP_141139149.1|820732_821365_+|TetR-family-transcriptional-regulator
MISNADHTAEPALSPADLPAEAVVVRAGSRDRILAVAYQLFSRRGVRDVGVNELIERSGVAKATFYRHFPSKDALVLAFLEQRDQLWTVDSIVGQAKLRGTTPTEQLLAIFDVFGDWFRRDDFEACSFINILLEMGAAHPLGQASIDYLARIRGHVQDLAEQAGLDRPEDFARSWHILMKGSIVSATEGDTQAAKRAQQMAGWLIEHHRS
>NZ_CP041188.1|WP_141139148.1|820323_820605_-|hypothetical-protein
MSAERTYDFIQCDDTDPWIESAAASAEVRHFAQESLRWQAQEIIDEVLRGTVPGEELSRARLRRCVAQNPGKPERALLQQLMLNRDPQAESPQ
>NZ_CP041188.1|WP_141139147.1|819603_820314_+|GAF-domain-containing-protein
MVTSTRAERASVAFVKLTDTLVADYDVVDLLHVLVEESVGLLDVAAAGLLLADPSGELQVVASTSEQSQLVEVLQLQAGAGPCVECYVTGSAVSVDDIAGLTKWLGFRQAALSQGFRSVHAVPMRVHGRIIGAMGLFGAREGFLTAEDAAIGQALADVATISLMQERTIREAVLVNEQLQLALNTRVLIEQAKGVIAHTAGVDMDAAFNLLRNHARANSQSLHMTAGRIVDRSLTL
>NZ_CP041188.1|WP_141139146.1|818898_819594_+|GAF-domain-containing-protein
MDIAPDMVAGDQNVCAPYLEKLPITGAAVSLFGGSAAETLVSASDELAARLDELQFNLGEGPRWRAHQTRLPVLIPDAQSTTDDEWPMFRQAIAGTDAAALFVFPLTVGAMDLGVVELYHAVRGNLNRSDQSMAAVLAGQTSWYLLRKILSLSSPDTDPALEPALISRREIHQATGMVLAQSGATAAESLLLLRAYAFANDLTLGEIAAAVLERRLSFDTDKGGASGPALQ
>NZ_CP041188.1|WP_141139145.1|818514_818772_+|hypothetical-protein
MSATIPKVEEAMANHIAADGFTPIGWQAYEIIYSILADPAPDLAEVKWRLRRCVAAHPGAPERALRDHLMVTSEMANANGQEGRD
>NZ_CP041188.1|WP_141139144.1|818312_818534_+|hypothetical-protein
MIRTIDDGLSYLVKVNHASVLDDYLNSAVDLARQYASSTGLCGILVTRHAHDTYTVAVSEAVPFGETRERHDP
>NZ_CP041188.1|WP_141139143.1|817093_818020_+|pantoate--beta-alanine-ligase
MATQLVTTAAELRAASARLLAQKAGRSQGLVPTMGALHEGHARLARTAVEQNDVVVASIFVNPLQFGDAVDLDRYPRTLDADLALLEEQGVDLVFAPPVEEVYPGGEPLVRVTAGSLGEKWEGASRPGHFDGALTVVAKLLHYGIPGSGLPPAGAFASGGGGLPAYRAYFGQKDAQQLALVRRMVADLNFPVEIVAVPTVRSEDGLALSSRNRFLSAEEREAALVLSRALRLLAERATAHQPLDLESARAMVELQSLVGLDYFDVVDPLTLEPLAENCRKVPFRGEGLALIAAKVGPVRLIDNVPLSS
>NZ_CP041188.1|WP_141139142.1|816201_817092_+|DUF2520-domain-containing-protein
MAKPGRLGVGIIGAGKVGAVLGAALRSAEHAVVGVSAVSEASRERAETLLPGVPILEIQEIVERSELVLLAVPDDALAGLVDGLAKLGAWQPGQIVAHTSGRFGVGVLRPVRAAGAIPLALHPAMTFTGMSLDLTRLLDCTFGVTADAAMLPIAQALVVEMGAEPVAIAEADRTLYHTALAHGSNHMVTLVAQASQLLRDVGVDAPERMLGPLLRATLENALASGESALTGPVARGDVGTVAAHAEALREYDAGAHGDVLEAYLAMARATARRASSRGLLKEDQVGALRAALEEGN
>NZ_CP041188.1|WP_141139141.1|814643_816209_+|PH-domain-containing-protein
MTSNVPEAGAPSAVPVAPDGEWLRVHPASPFVRGWVALAAIGFFFGRDFFERLLQGRPLFEEDFAGRAPWLVAGGGIVLVVTVLGFILTWYFTKYQVAEGYVRVNSGFLFRQQRQARLDRVQAIDIVQPLLARIFGLAELKFEVADAGESAVKLAYLRMDDARQLRATILARAAGVVPDPARPQEAAPEAPEYPVLSVPPSRLIGSLLLSEQSFFVVVGGIAAVILSAVTDNRGFFFYLIPAVLGLAASYWGFFNKGYNFTAAISPDGIRLRYGLLDTQAQTLPPGRVQALKVAQSPLWRIFGWYRIQVNVAGYGAVGSNGETSSRTTLLPVGKLADVMSMLALVLPDPGTPEPGRIFAAGLSGLDSDGGFVTTPHRGRFLAPLGWRRNGFATTDTALLIRSGRWWRELVVVPHQRTQSMALHQGPLARRFRLADLVLHTTAGPVSPRLTQAGLDEARGLFDAQSARARLARKRQTSEQWLATVAPAPVAEPAPVVEPAETPSLVVEPAETSPQQEGPQRG
>NZ_CP041188.1|WP_141139140.1|814134_814647_+|PH-domain-containing-protein
MRTEAIDPPGITWQRVSPKYVTVRLVQWAIGNLVTVIVLSLPLVLVLLGWWRWPPLWLAITVPAVTLVLAIWRLLLIPRQVRAIGYAERDDDLLIRGGIFFQRTMTVPYGRMQYVDIGVGPVERGLGLCTLKLHTASPGTNATIPGLPAAEGARLREQLAARGEARLAGL
>NZ_CP041188.1|WP_141139150.1|822638_824105_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MSTEVSSNASGRPGPVPAPKSSVPEKMSRESVTIIATLLVATFVVILNETIMNVALQRLMVDLGVDAPTVQWLSTGFMLTMAVVIPTTGFILQSLSTRAVFMLAMGLFAGGTALAAVAPGFEILLLARIVQAGGTAIMLPLLMTTILTLVPLAKRGAVMGNVSIAISVAPAMGPTVSGLILEHFTWRFMFVFVLPVALAALAIGAKYLTNVGETEKTKLDFLSVLLTVPAFGGLVYGLSQIGGGQSGPSAVAIAALVMGVASLTVFVLRQLRLQKAEAPLLDLRAFNFRMFTVSVLLMVVAMMALFGGVILLPLYLQEIRGLGSLETGLALLPGGLAMGLLGPFIGRLFDKVGPRPLTVTGSVLMVLALWQFSTLDAGTPVWWIVTLHVGLSFGLALLFTPAFTTGLNPLPPHLYSHGSAIMSTTQQVAGAAGTALLVSIFAVVSAASGLVAGMSAAFLTATVIALAAVVLSAMMRKTEGAAPGHGAH
>NZ_CP041188.1|WP_141139151.1|824195_825026_-|alpha/beta-fold-hydrolase
MTSENIKTPDGGTLELYSTGAELASAGSGVVVVPASMVTAADYTKFAQKLSAALGRPVHTFNRRGRGSSSPQAEDYTLDADIRDLNAVMKHTSSTDVFGHSFGGAVALHAARTLPVERLAVYDPAVSVNHSVKADWTTEYERATAAGDDDRALAVLQRGLEAGTRSRMPLSMLTIANKLTAGTSEGKQQRELMRTGVREIKAIIAADMPAEPFLELPLETLIIVGEKSPAYFGVACGQIHDILTGSSYTILHGAGHDGVLRAPDKLIAELSDFFAG
>NZ_CP041188.1|WP_141139152.1|825060_825915_-|alpha/beta-fold-hydrolase
MNEQEVPTHDGGRLALYSYGTEDAPGERRVVVIGGAFLTALIYRPFSMALADGLGDGWAVDVYDRRGRGNSTEQPADYSMATEIADVRTVMDATGARNVLGHSLGGSVALNAVQEFVGTPYEPDKLAVYDAAVNIDGSIDMSWLDDFEAAVNAGKVGHAMARMKKGMQPGTALSKIPEPVLAGLMAVVSRTKVNRMLRELMPTGVGELRAAYDEAEHARNFAVLPANTHFMVGGKSPSYYKVTAQRLHAAVPGSTFELSPKGFHGSVPAAVKELVTDIAEYFRG
>NZ_CP041188.1|WP_141139153.1|825960_826845_-|alpha/beta-fold-hydrolase
METWKVEAEDGGRLDVHSFRTPAGLDPTTAGPPGVVLIHGTLVTDALYRPFARKLSVLLGRPVHCYNRRGRAGSAPQPEDYSVKTEVSDLAAVMRQTGATDVVAHSYGGFVALQAARTLPVGRLVTYDAAVSLSGNLSHRWRPELEDAVAAGQLNHAWAHLVQGLATAGPLSYLPLGALRMLSILSARTNLGAEMRQLLPTAVTEMRAVLDAEAELDHFTALTTPVLMLSGGWSPAYFAETGRQLAAAVPCINFQVVPGQLHEGPIRPGKGLAVRIARFINGSDSRVRRLGRRR
>NZ_CP041188.1|WP_141139154.1|826912_828445_+|lysine--tRNA-ligase
MTSQNTPTPKNAPEPLDASEQMRIRMDKRAKLIERGTEAYPVGVERTHSLTEIREKYAHLEADDTTGDVVGVTGRVVFVRNTGKLCFATLQEGGVDGKGTRLQAMLSLANVGEEALADWKALVDLGDHVFIKGEVISSRRGELSVMAESWSMASKALRPLPVLHAELNEETRVRQRYVDLMVRDEAREMVYTRAAITRSIRESLHRHSYVEVETPILQLVHGGALARPFETHMNAFDQKMTLRIATELYLKRAVVGGIDRVYDMGRVFRNEGVDSTHSPEFTTLECYEAWADQFVMAERIKEIILDAADAVGVGRTLQTEAGEINLDGDWAWVSVYPGLSDAVGQEVTPDTSLEVLREIAQKHEVKVDPKWDAEKLAVELFGEIVEPTLLNPTFVYDYPPSAQPLARPHRNDGRLIEAWDLIIGGMERGTAFSELIDPVIQRERLTEQSRHAAAGDVEAMQLDEDFLRALEYGAPPMGGIGLGIDRLVMLFTGAGIRETILFPLLKPEGH
>NZ_CP041188.1|WP_141139155.1|828447_828627_+|hypothetical-protein
MEYVAVLLPSLVVGLLFWFAMKSIFNADKSERKAEARAKAEAESRSAAPLNEQNPETDK
>NZ_CP041188.1|WP_104060154.1|828771_829101_+|Lsr2-family-protein
MAQKVNIILVDDLDGGSADENVRFGLDGVSYEIDLSSANAAELRSALERFVAAGRKTSAGRATRTKAVVGPRTNDSAQIRQWARDNGYTVNSRGRIQAEIQEAYQKANS
>NZ_CP041188.1|WP_168223481.1|831075_831555_-|DUF1772-domain-containing-protein
MEVITLLMTAATVALAGIGGLYYSYACSVMPGLRATDDATFVSAMSRINTAIQNPVFALSFVGAFLSLAGSAAFSWANGLASTLPLSVSLTCYTATLAITFAANIPLNNALDLAAASGDAAAARKSFERRWTRWNIHRTWLSLAALVALSVAWAALGQP
>NZ_CP041188.1|WP_141139157.1|831708_834201_+|AAA-domain-containing-protein
MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLSISLDGVREQVQEIIGQGQQAPSGHIPFTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKETTGAGVGPGQPEGTPAGSVVLDQFGRNLTQAARENKLDPVIGRESEMERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVRGDVPETIKDKQLYTLDLGSLVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDEIHTLVGAGAAEGAIDAASILKPMLARGELQTIGATTLDEYRKHIEKDAALERRFQPIQVKEPSVAHAIEILKGLRDRYEAHHRVTITDGALASAANLAERYISDRFLPDKAIDLIDEAGARLRIRRMTAPPELKAMDERIAKLKMEKESAIDAQDFEGAAALRDKEQKLITERSEKERHWKSGGMDDISEVDEDLIAEVLANSTGIPVFKLTEEESTRLLKMEDELHKRVVGQNEAIRSLSQAIRRTRAGLKDPKRPGGSFIFAGPTGVGKTELAKALAEFLFGDEDALITLDMSEYSEKHTVSRLFGAPPGYVGYEEGGQLTEKVRRRPFSVVLFDEVEKAHADLFNSLLQILEDGRLTDSQGRVVDFKNTVIIMTTNLGTRDISKSVATGFQSGTDTQTGYNRMRARVTEELKQHFRPEFLNRVDDVVVFPQLTQDEIIEIVDMFVGRLEKRLKDKDMGIELTTAAKVLLATRGYDPAMGARPLRRTIQREIEDQLSEKILFGELHAGDIVVVDVDGEGDDAKFTFAGNAKPLIPEIAPSV
>NZ_CP041188.1|WP_141139158.1|834323_834839_+|amino-acid-N-acetyltransferase
MTDSDSFHIRSARTTDVAAIKRLVAPLAEQRILMAKETVAYYESLQEFRIAEADDGEVIGCGALHVMWEDLAEVRTLAASDAWRGKGVGHVLVESLLAEARELGVARVFCLTFEVDFFKRHGFEVMADQTAVDPVVYSELLRSHDEGVAEFLDLARVKPNTLGNTRMIKTL

Crispr_ID: NZ_CP041188_2

• CRISPR_ID: NZ_CP041188_2
• CRISPR_location: 1295068-1295149
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP041188_2

Consensus_repeat	Method
AGGGAACCCTGCCGGCGTGGGCCCA	CRISPRCasFinder

spacers of NZ_CP041188_2

>2.1|1295093|32|NZ_CP041188|CRISPRCasFinder
ACCACCGGGCCCCTCAGCTCGCAAGCTCGCTC

CRISPR arrays and Neighbor proteins around NZ_CP041188_2

CRISPR arrays

The CRISPR arrays of NZ_CP041188_2

>merge|NZ_CP041188|2|1295068-1295149|CRISPRCasFinder
AGGGAACCCTGCCGGCGTGGGCCCAACCACCGGGCCCCTCAGCTCGCAAGCTCGCTCAGGGAACCCTGCCGGCGTGGGCCCA

>NZ_CP041188|2|2|1295068-1295149|CRISPRCasFinder
AGGGAACCCTGCCGGCGTGGGCCCA	ACCACCGGGCCCCTCAGCTCGCAAGCTCGCTC
AGGGAACCCTGCCGGCGTGGGCCCA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041188.1|WP_141139512.1|1286847_1287558_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP041188.1|WP_141139516.1|1292772_1293429_-|dTMP-kinase	unknown	unknown	gnl|CDD|234814
NZ_CP041188.1|WP_104063327.1|1291633_1292776_-|DNA-polymerase-III-subunit-delta'	unknown	unknown	gnl|CDD|236134
NZ_CP041188.1|WP_141139522.1|1302548_1304006_+|cysteine--tRNA-ligase	unknown	unknown	gnl|CDD|234705
NZ_CP041188.1|WP_141141959.1|1295151_1295973_-|class-I-SAM-dependent-methyltransferase	unknown	unknown	unknown
NZ_CP041188.1|WP_141141961.1|1299723_1300269_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP041188.1|WP_141139515.1|1290046_1291612_-|alpha/beta-fold-hydrolase	unknown	unknown	gnl|CDD|312032
NZ_CP041188.1|WP_141139517.1|1293482_1294673_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl|CDD|99738
NZ_CP041188.1|WP_141139514.1|1288807_1289572_-|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl|CDD|379207
NZ_CP041188.1|WP_056342490.1|1294682_1295033_+|DUF2516-family-protein	unknown	unknown	gnl|CDD|378483
NZ_CP041188.1|WP_141139510.1|1285994_1286426_-|hypothetical-protein	unknown	unknown	gnl|CDD|236766
NZ_CP041188.1|WP_026266570.1|1300539_1301022_+|CarD-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224248
NZ_CP041188.1|WP_141139520.1|1301155_1301962_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl|CDD|234670
NZ_CP041188.1|WP_141141960.1|1297732_1298941_+|two-component-sensor-histidine-kinase	unknown	unknown	gnl|CDD|274368
NZ_CP041188.1|WP_141139521.1|1301964_1302462_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl|CDD|178851
NZ_CP041188.1|WP_056342479.1|1298937_1299618_+|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|223816
NZ_CP041188.1|WP_141139519.1|1296876_1297530_-|phosphate-signaling-complex-protein-PhoU	unknown	unknown	gnl|CDD|273990
NZ_CP041188.1|WP_141139513.1|1287566_1288811_+|hypothetical-protein	unknown	unknown	gnl|CDD|239945
NZ_CP041188.1|WP_141139511.1|1286477_1286840_+|hypothetical-protein	unknown	unknown	gnl|CDD|143603
NZ_CP041188.1|WP_141139518.1|1296054_1296801_+|phosphoglyceromutase	unknown	unknown	gnl|CDD|184519

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP041188.1|WP_141139516.1|1292772_1293429_-|dTMP-kinase	gnl|CDD|234814	PRK00698, tmk, thymidylate kinase; Validated.	1.84001e-82
NZ_CP041188.1|WP_104063327.1|1291633_1292776_-|DNA-polymerase-III-subunit-delta'	gnl|CDD|236134	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated.	0
NZ_CP041188.1|WP_026266570.1|1300539_1301022_+|CarD-family-transcriptional-regulator	gnl|CDD|224248	COG1329, COG1329, Transcriptional regulators, similar to M. xanthus CarD [Transcription].	1.23073e-62
NZ_CP041188.1|WP_141139515.1|1290046_1291612_-|alpha/beta-fold-hydrolase	gnl|CDD|312032	pfam08386, Abhydrolase_4, TAP-like protein. This is a family of putative bacterial peptidases and hydrolases that bear similarity to a tripeptidyl aminopeptidase isolated from Streptomyces lividans. A member of this family is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterized from Propionibacterium freudenreichii.	4.88702e-29
NZ_CP041188.1|WP_141139517.1|1293482_1294673_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl|CDD|99738	cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.	1.41491e-137
NZ_CP041188.1|WP_141139514.1|1288807_1289572_-|SGNH/GDSL-hydrolase-family-protein	gnl|CDD|379207	pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrolase family. This family of presumed lipases and related enzymes are similar to pfam00657.	1.27863e-19
NZ_CP041188.1|WP_056342490.1|1294682_1295033_+|DUF2516-family-protein	gnl|CDD|378483	pfam10724, DUF2516, Protein of unknown function (DUF2516). This family is conserved in Actinobacteria. The function is not known.	2.89281e-26
NZ_CP041188.1|WP_141139510.1|1285994_1286426_-|hypothetical-protein	gnl|CDD|236766	PRK10811, rne, ribonuclease E; Reviewed.	7.20444e-08
NZ_CP041188.1|WP_141139521.1|1301964_1302462_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl|CDD|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	6.50975e-75
NZ_CP041188.1|WP_141139520.1|1301155_1301962_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl|CDD|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.27199e-69
NZ_CP041188.1|WP_141141960.1|1297732_1298941_+|two-component-sensor-histidine-kinase	gnl|CDD|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	7.20409e-76
NZ_CP041188.1|WP_141139522.1|1302548_1304006_+|cysteine--tRNA-ligase	gnl|CDD|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP041188.1|WP_056342479.1|1298937_1299618_+|response-regulator-transcription-factor	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	7.39669e-91
NZ_CP041188.1|WP_141139519.1|1296876_1297530_-|phosphate-signaling-complex-protein-PhoU	gnl|CDD|273990	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function. [Regulatory functions, Other, Transport and binding proteins, Anions].	7.00906e-47
NZ_CP041188.1|WP_141139513.1|1287566_1288811_+|hypothetical-protein	gnl|CDD|239945	cd04501, SGNH_hydrolase_like_4, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.	1.5732e-09
NZ_CP041188.1|WP_141139511.1|1286477_1286840_+|hypothetical-protein	gnl|CDD|143603	cd07579, nitrilase_1_R2, Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	0.00390675
NZ_CP041188.1|WP_141139518.1|1296054_1296801_+|phosphoglyceromutase	gnl|CDD|184519	PRK14120, gpmA, phosphoglyceromutase; Provisional.	0

Protein sequences

>NZ_CP041188.1|WP_056342490.1|1294682_1295033_+|DUF2516-family-protein
MDGELIIRPVELAVFFILALVAFGLEVWALLDCVRHKSAAFEATGKRTKTFWLALTGGATLIGAISLFSSGGIFGTLGLFGLAAVVAASIYLADVRPAVKDAGRGGSRNTGPYGGW
>NZ_CP041188.1|WP_141139517.1|1293482_1294673_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MSLSEQYAASLSAETVVVAAGRPARERDEPVNPPIVLSSTYFGTGALGDGDRGYGRYSNPTWDPFEEALGQLEGSELPGLLYASGLAAVSSALSLLPAGGVLVMPSHSYAGSLVMATELAQKGFLELRTVDITDTDAVKAQIAPQGPDAKAARMLWLESPTNPMLGIADIRELTAAAHRVGAIVVTDNTFSTPLVQQPLSLGSDVVLHSVTKYLAGHSDVVLGALVTSNPDIRAALLHHRIIHGGIAGPFEAWLALRGLRTLALRVERSQASAAVLAERLSTHPLIDSIRFPGLPTDPGHERAKTQMSGFGSIVCVQIAPVAGLSGADAADKLVRALQLWLPATSLGGVESLIERRRRHAAEPLSVPDNLVRLSVGIENIEDLWADLKQALDSLGR
>NZ_CP041188.1|WP_141139516.1|1292772_1293429_-|dTMP-kinase
MTTNSPGLFIAFEGGDGAGKSTQAARLAEALETRGLTVLRTREPGGTPIGEKLRSLVLDHGHGHIDAHTEALIFAASRAAHASQVIRPALERGEVVLTDRYIDSSVAYQGAGRDLGADAVRTLNEWATSGLQPDLTVLLDVDPADGRRRRTAGDAAEDRLESEADEFHSTIRGAFLELASSRPDTYLVLPADLPVNELAARILTRVDALLASAGRGAA
>NZ_CP041188.1|WP_104063327.1|1291633_1292776_-|DNA-polymerase-III-subunit-delta'
MTVWDDLQGQPAVVEQLRLASRGEGLTHAWLFTGPPGSGRSNAAKAFAAALNCDQDDVARRGCGECPACLTILGETHSDVTYVRTEKVTITIDEARDLVSKAGNRPSSGRWRIIVVEDADRMAERTTNVLLKAIEEPTPRTIWMLCAPSPADVLVTIRSRCRAVALRLPPAADVAALLVKRDGVDPALAERAARAAQSHVGIARRLARDPEARERRLETVRFPLGLRGVTAAVMMADKLVKIATAEANSSNEERDAAEKAALLATLGAPESGTLPPTMRSQVRQLEDDQKRRAKRSITDSLDRTLTDLLSFYRDVLIIQLGNAVELVNVELRGELEEFAARSAPETTLARMDAINKARQRITTTNVAPLLTIESMAASLI
>NZ_CP041188.1|WP_141139515.1|1290046_1291612_-|alpha/beta-fold-hydrolase
MTARPLPARSRSLVIGLRAAGALILALTLASCGLFGGDTPDAAPATAKADPAIVASAPAGLDTFYAQEVVWEPCENGFQCAKVTVPVDYGKPDGEKIQIAALKAPSTGKKTGTLLVNPGGPGGSGYDFVKDASATHFSQSVRANYDLVGFDPRGVKRSAPVTCLADAERDASRAKVYALETDAGLAAALADNKAIAAQCAAKTGPVLGHVDTVSAAKDLDILRAVVNDSKLNYLGYSYGTFLGSTYASLFPENVGRMVLDGALDPSISNEELTSGQAVAFEKAIRAYVASCQQESSCPLSGNVDSGVQQIRDLITAVQNTPWQAKDGRLVNATMFVSGLITPLYNDQSWPALTQALEAALNGDASLMLRLADLGADRGADGKYTSNSTFAFGAINCLDYPMVSDTASMRAEQQRLMQASPTLGYFFAYGGTNCVDWPYKNLRTPAPVEYTGEAPIVVVGTTGDPATPVEWAASLRKQLGNASLLTWQGEGHTAYGRANSCLEDAVDKYLVDGTVPADNTVC
>NZ_CP041188.1|WP_141139514.1|1288807_1289572_-|SGNH/GDSL-hydrolase-family-protein
MAKKKKLKLAASWQYIGLGALAVVTAGVVGFAFMAPPSPPPAADSVASYQPPTVTKVEPQRVAVIGDSYSAGAGAGDPAMGWVGRLTRNQLWDVTNLARGGTGYSTSVTTNAQKACALDYCPSYPEMIAEAVKTNPTLILVAGGRNDALVPAADEAEAVRTFYETLRAEAPAAKIVAFNVLWDNRTPPESVPAMSAVVKESVESVGGIYLDAQQPLAKVEGLVGSDGVHPNAAGHAAIFEAKLGLLQQSEIAVR
>NZ_CP041188.1|WP_141139513.1|1287566_1288811_+|hypothetical-protein
MSDFLGPKPLTAASIDAAITGKITTPGSATATALTATYASRAVAREARAGSRGFAFIGDSNTASGVTGSSALLLAPVIYFENPSWVGWAVVTGAGRYHAAAHAAEPGITPAGWVTKYLAGVIAAAPYAVVDALGTNGLTTLAAQQAALTTIYDACDNAGIKVIVCSIPPKSTEGAEVARMNRWKRVIARNRGYLFVDNYATLVDPATGTMQAAYNSDGTHFNAVGARALGIAFNTAINAVLPDVSMLALAQPAPADLVNKPLLLVKSGFVPEDWTSLGFGSASTSVDTVAGVAGKMFTVTQTAEGVNTSSAIALNADLIPGRRYRVEYKYQLTVVGTAPTAASVRLVVTTGGGTTLTSINTQQSVPLSTVTHEFVCPTLPNYNYRLNMTMNGGGVGTKQQIGQVTITDLTAAGL
>NZ_CP041188.1|WP_141139512.1|1286847_1287558_+|hypothetical-protein
MVLPAGVTTCLVFKKAPVSFGGTSGGVEIEITPSVRLVHTETGTPLVDFIESVAPSEGGIAQVMLPHTDQTGFQDEAGNAFINWHYTARVRLKKTGHQPKHQPLFDFQIPSGQVTGLDLSLIPSGVAALPTSAPILTVTSINGQTGAADTYMQLARTPELLIVGAITRDSGGAPTSAAVVWPDGTAGTFTGTPSATFPGSLDSYTITYGTTRTYTQPTVTRDGTGTITNQPAIVLS
>NZ_CP041188.1|WP_141139511.1|1286477_1286840_+|hypothetical-protein
MALKDWANGVLGGTPLDATRLNDRDTKLEQALFQLARNPEALFAGAVTYDGNGAATSAVIEWPDGVTGNYSGTASVSFPGSVSAYTVTRAGSPTVTFTQPAVTRDATTGNVTNRPPITVT
>NZ_CP041188.1|WP_141139510.1|1285994_1286426_-|hypothetical-protein
METKSAVLGAAGMLLAGGLAFGLIGIANADNQPAPAMTTVATTVAPEPTPEPVVSEPVVEPVVEPVVVAPVVAPPVVVEPAPVVEAPAPVVVQPAPIYTPPAPAYVAPAGPAQTFEAPPVVAPGVPNPILPGVPPGGAIDYRK
>NZ_CP041188.1|WP_141141959.1|1295151_1295973_-|class-I-SAM-dependent-methyltransferase
MQKAERVSAPHGRSGRPVGNVTRGTTNPNRMRRVDRWLTGPQAWRLRAADDPLVVDLGYGATPATAVELFERLRAVRPDVRVCGIEIEPERVRIAKALERPGLSFQVGGFELPLPGRPVLVRAFNVLRQYEEADVAGIWRLVQGRLAPGGLFIDGTCDEIGRRVTWVALDAGRPLSLSMSVRFGSFDLPSEIAERLPKALIHRNVPGEPVHRLMQAMDRAWLESAPLASFGNRQRWHAMCRTLSDGGWPVQDGPARWRLGELTVAWEAVAPSV
>NZ_CP041188.1|WP_141139518.1|1296054_1296801_+|phosphoglyceromutase
MTYKLILLRHGHSEWNAKNLFTGWVDVDLNDQGREEAARGGELLVENDLLPDVLYTSLLKRAINTANISLDKADRGWIPVKRDWRLNERHYGALQGKDKAQTLAEYGEEQFMEWRRSYDTPPPPLDDNSEFSQAHDPRYADLGDALPRTECLKDVLVRLLPYWESDIKEDLKAGKTVLVTAHGNSLRALVKHLDGISDDAIASLNIPTGIPLVYDLDEDFQPIKPGGTYLDPDAAAEAILAVANQGKK
>NZ_CP041188.1|WP_141139519.1|1296876_1297530_-|phosphate-signaling-complex-protein-PhoU
MRKVFQEELTQVGEQLVEISRLVSEAMAKASTSFRVADVDLAEDVIAADARIDFLQTSLDERAIDILALQGPVASDLRMIVGSLRMSASLERMGDLARHIAQLARLRFPATVIPASMTETFNKMAEQDQLIADKLIVLLESRDLEVARDIHKANNTIDDLHLSVFKAIASPDWAESPATTVDVALASRYFERFADHGVSVARKVTYLVTGEWQGQGF
>NZ_CP041188.1|WP_141141960.1|1297732_1298941_+|two-component-sensor-histidine-kinase
MLIGVIAGLVGLSLGTFGVLAFRISEKQRKLVDVDVDELALPAGAAEVLAVVGRAFVVVDAVDGVVRASPAAYAYGLVRGHTVVHKELLDMTAGVRRDGVILEKRLELQRGPLGHGTIIVQVRAAMLGEEYIVLLADDRTEITRTEEIRNDFVANVSHELKTPVGAISLLAEALESSADDEQAVRRFAKRMHKESSRLAALVQDIIELSRLQGASVSQEGKAVDINTVITEAVDRSQLPAESKNIRIVVGEPVDATVYGDRDLLVTALRNLIDNAIRYSPENTRVGVGVRSKDGLIAVSVTDQGEGLTPEDQERVFERFYRVDAARSRHTGGTGLGLSIVKHVASNHGGEVTLWSRPGQGSTFTLRLPEMESRDAPDTAGVKEPAIPVRRKERGVHEQGASA
>NZ_CP041188.1|WP_056342479.1|1298937_1299618_+|response-regulator-transcription-factor
MSRILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGADLVLLDLQLPGLSGTEVCRQLRQRSSVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGEPEELISATVQAGPVRMDIERHVVSVDGQQVLLPLKEFELLEMLLRNSGRVLTRGQLIDRVWGSDYVGDTKTLDVHVKRLRGKIEPDPSIPRFLVTVRGLGYKFEP
>NZ_CP041188.1|WP_141141961.1|1299723_1300269_-|hypothetical-protein
MNRAQGGKLALAAGSLALALATMTGCGYINPQQTSHQYAASDGIRADLGPLQLRNMLIVSAGADKPGRLLGAIYNSSSQDVKLTVNGAEGSQTQVPVKANSYTLLNDSTDEAILSTSGGIAGSMVDVKVTEDGTNVSKTVKIPVLDASLAEYKEYLPAGSEPTGSATPSPSPSATGTGAAH
>NZ_CP041188.1|WP_026266570.1|1300539_1301022_+|CarD-family-transcriptional-regulator
MVFEVGETVVYPHHGAAKIEEIKMRTVKGEEKMYLKLKVAQGDLTIEVPAENVDLVGVRDVVGKEGLEHVFDVLRAEFTEEPTNWSRRYKANLEKLASGDVIKVAEVVRDLWRRDHDRGLSAGEKRMLAKARQILISELALAEKTDEEKAASVLDEVLAS
>NZ_CP041188.1|WP_141139520.1|1301155_1301962_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MNNGLPRPVTAVVIVAAGSGERLGYGMPKARVPLGSDAILTHALRGVAAAGVARQICVALPPGDAVLQELCAAFAEELRAGHDANQENPLPVLTTVDGGATRAASVRSALAALLDGTEAVLVHDAARALTPEYVFHRVVDSLAAGAVAVIPAVPVVDTVKMVTPTTGDDSSIAPELVTGTAPREELRSVQTPQGFRLSTLIQAHQAAADFDEKQSAAVTDDAMLVELLGVPVHAVHGSTQSLKITTPLDLIIAEGLLEGPLGIRWVEG
>NZ_CP041188.1|WP_141139521.1|1301964_1302462_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MSEFKMILPRTGIGLDVHAYASPDLPRPLWLGGLFWEGERGLAGHSDGDPVAHAAADALFSAAGIGDLGTHFGTDRPEFAGASGVTLLTEAARIVRAAGFEIGNVAVQFVATRPKFGPRREESQRVLSEAAGAPVSVTATTSDGLGFTGRGEGISAVATALVYPR
>NZ_CP041188.1|WP_141139522.1|1302548_1304006_+|cysteine--tRNA-ligase
MTLRFYDTASAEVRDFVPLVPGKASLYYCGATVQGLPHVGHIRSAIAFDQLTRWLEYRGLRVTAVRNVTDIDDKILAKSAESFSPDFEAGPDAVREEEWWALAYRYEQAFLQAYDTLGVSRPTYEPRATGHIPEMHALIRQLIDRGHAYPALDDSGDVYFDVRSWDKYGSLTRQNIDDMQGAPDADPRGKKDPRDFALWKGSKEGEPTTASWASPWGAGRPGWHLECSAMVTKYLGTEFDIHGGGLDLRFPHHENEMAQSQAAGHGFANFWMHNGMVTYQGEKMSKSIGNTISPSEMLDIASPRVVRYYLGQAHYRSVLDYRPTSLDEAAAAVERIDGFISRAVRALAAGGNYTFATYGKVPEAFESAMDDDLNVPQALAVLHETVRAGNTALTEGKLEDAQQALHSVHDMLRVLGLKAVASGPASDARESAALDVLVEAQLAARAQARATKDWAASDAIRDTLKAAGVVVEDGPDGATWSLQRD

Crispr_ID: NZ_CP041188_3

• CRISPR_ID: NZ_CP041188_3
• CRISPR_location: 1730840-1730947
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP041188_3

Consensus_repeat	Method
TGATGTCGGCTGCTGCCGCAACGTCGG	CRISPRCasFinder

spacers of NZ_CP041188_3

>3.1|1730867|54|NZ_CP041188|CRISPRCasFinder
CGGTGGTTCCGTCGCCGGTGGTGCCGTCGAGGACGTTGTTTCCGAGGCCGAGGT

CRISPR arrays and Neighbor proteins around NZ_CP041188_3

CRISPR arrays

The CRISPR arrays of NZ_CP041188_3

>merge|NZ_CP041188|3|1730840-1730947|CRISPRCasFinder
TGATGTCGGCTGCTGCCGCAACGTCGGCGGTGGTTCCGTCGCCGGTGGTGCCGTCGAGGACGTTGTTTCCGAGGCCGAGGTTGATGTCGGCTGCTGCGGCAACGTCGG

>NZ_CP041188|3|3|1730840-1730947|CRISPRCasFinder
TGATGTCGGCTGCTGCCGCAACGTCGG	CGGTGGTTCCGTCGCCGGTGGTGCCGTCGAGGACGTTGTTTCCGAGGCCGAGGT
TGATGTCGGCTGCTGCGGCAACGTCGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041188.1|WP_141139813.1|1732466_1733537_-|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl|CDD|223745
NZ_CP041188.1|WP_141139818.1|1738470_1740027_-|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|224053
NZ_CP041188.1|WP_141139810.1|1728677_1729892_-|protein-kinase	unknown	unknown	gnl|CDD|270916
NZ_CP041188.1|WP_141139801.1|1718130_1719447_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP041188.1|WP_141139804.1|1720609_1721962_-|MFS-transporter	unknown	unknown	gnl|CDD|273327
NZ_CP041188.1|WP_141139819.1|1740158_1741349_-|ROK-family-protein	unknown	unknown	gnl|CDD|224851
NZ_CP041188.1|WP_141139809.1|1728195_1728681_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP041188.1|WP_141141990.1|1741564_1742344_+|carbon-nitrogen-hydrolase-family-protein	unknown	unknown	gnl|CDD|143600
NZ_CP041188.1|WP_168223507.1|1724172_1725141_-|hypothetical-protein	unknown	unknown	gnl|CDD|226119
NZ_CP041188.1|WP_141139803.1|1719942_1720506_+|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl|CDD|235544
NZ_CP041188.1|WP_141139802.1|1719474_1719903_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP041188.1|WP_141139815.1|1734266_1735733_-|FtsX-like-permease-family-protein	unknown	unknown	gnl|CDD|226957
NZ_CP041188.1|WP_141139808.1|1725843_1728063_+|NADP-dependent-isocitrate-dehydrogenase	unknown	unknown	gnl|CDD|377178
NZ_CP041188.1|WP_141139816.1|1735996_1737091_-|substrate-binding-domain-containing-protein	unknown	unknown	gnl|CDD|380649
NZ_CP041188.1|WP_141139817.1|1737141_1738425_-|sugar-ABC-transporter-permease	unknown	unknown	gnl|CDD|226669
NZ_CP041188.1|WP_141139820.1|1742322_1743948_-|PucR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|377939
NZ_CP041188.1|WP_141139807.1|1725384_1725612_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP041188.1|WP_141139812.1|1731369_1731993_-|hypothetical-protein	unknown	unknown	gnl|CDD|235906
NZ_CP041188.1|WP_141139814.1|1733571_1734264_-|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|213222
NZ_CP041188.1|WP_141139805.1|1722104_1723799_+|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl|CDD|234854

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP041188.1|WP_141139813.1|1732466_1733537_-|Gfo/Idh/MocA-family-oxidoreductase	gnl|CDD|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	3.63946e-59
NZ_CP041188.1|WP_141139818.1|1738470_1740027_-|ATP-binding-cassette-domain-containing-protein	gnl|CDD|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP041188.1|WP_141139805.1|1722104_1723799_+|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl|CDD|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NZ_CP041188.1|WP_141139804.1|1720609_1721962_-|MFS-transporter	gnl|CDD|273327	TIGR00895, transport_protein, benzoate transport. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.83115e-62
NZ_CP041188.1|WP_141139819.1|1740158_1741349_-|ROK-family-protein	gnl|CDD|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.38578e-62
NZ_CP041188.1|WP_141141990.1|1741564_1742344_+|carbon-nitrogen-hydrolase-family-protein	gnl|CDD|143600	cd07576, R-amidase_like, Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Native R-amidase however appears to be a monomer.	4.4631e-96
NZ_CP041188.1|WP_168223507.1|1724172_1725141_-|hypothetical-protein	gnl|CDD|226119	COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid transport and metabolism].	2.60552e-05
NZ_CP041188.1|WP_141139803.1|1719942_1720506_+|phosphoribosylglycinamide-formyltransferase	gnl|CDD|235544	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed.	7.05554e-104
NZ_CP041188.1|WP_141139820.1|1742322_1743948_-|PucR-family-transcriptional-regulator	gnl|CDD|377939	pfam07905, PucR, Purine catabolism regulatory protein-like family. The bacterial proteins found in this family are similar to the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR). PucR is thought to be a transcriptional activator involved in the induction of the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression. The other members of this family are also annotated as being putative regulatory proteins.	3.12491e-20
NZ_CP041188.1|WP_141139815.1|1734266_1735733_-|FtsX-like-permease-family-protein	gnl|CDD|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	6.70765e-17
NZ_CP041188.1|WP_141139808.1|1725843_1728063_+|NADP-dependent-isocitrate-dehydrogenase	gnl|CDD|377178	pfam03971, IDH, Monomeric isocitrate dehydrogenase. NADP(+)-dependent isocitrate dehydrogenase (ICD) is an important enzyme of the intermediary metabolism, as it controls the carbon flux within the citric acid cycle and supplies the cell with 2-oxoglutarate EC:1.1.1.42 and NADPH for biosynthetic purposes.	0
NZ_CP041188.1|WP_141139816.1|1735996_1737091_-|substrate-binding-domain-containing-protein	gnl|CDD|380649	cd19994, PBP1_ChvE, periplasmic sugar binding protein ChvE that interacts with a bacterial two-component signaling system. Periplasmic aldose-monosaccharides binding protein ChvE that belongs to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.	2.67758e-144
NZ_CP041188.1|WP_141139817.1|1737141_1738425_-|sugar-ABC-transporter-permease	gnl|CDD|226669	COG4214, XylH, ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism].	3.10067e-121
NZ_CP041188.1|WP_141139812.1|1731369_1731993_-|hypothetical-protein	gnl|CDD|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	0.00308751
NZ_CP041188.1|WP_141139814.1|1733571_1734264_-|ATP-binding-cassette-domain-containing-protein	gnl|CDD|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.0632e-108
NZ_CP041188.1|WP_141139810.1|1728677_1729892_-|protein-kinase	gnl|CDD|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	2.25547e-87

Protein sequences

>NZ_CP041188.1|WP_141139810.1|1728677_1729892_-|protein-kinase
MVADSPSSIKNEMLGGRYRLADIIGRGGMSSVYRARDENLGRDVALKLFAPQAPDANELRRQEAEIQLLATLNHPSLVTLFDAGIDTRVLDQPRPFLTMELVEGQDLRSRIRHSAVPLDELAVIGAGVADALAYVHSLGIIHRDIKPGNILLVQIRPGEPLRPKLTDFGIARMADSARLTATGTMVGTAAYLSPEQAMGSPLSPATDIYSLGLVLLECIKQTVEFPGSAVESAVARLHRAPEIPADLPAEWADLIRSMTAIEPLERPVASDVESVLRQALVSPVSAPGELATETTRVLPAMPFRPPSIAITAESDLPVVRSSKGQLDITRGPDARGWVPSLSRLRHAGRRFWTVTALGVLAAGAAAAALTLGLAPQPTPDVVPYPAVTGTLGDHLKELQESVEP
>NZ_CP041188.1|WP_141139809.1|1728195_1728681_-|hypothetical-protein
MSPAPKHRGRSATAKCLTAAAAFLLAGSLAACGPAEAGLQRDAARQLQARVLGVTQASATNDPAGGLAALDSLEADLASAARTGQVSEERRRSITTAATAVRADLTAAKALADAAAAKVAEDAAAAQRQADADAAQKGATAPVAPAPSDDKGNRGKGKDGD
>NZ_CP041188.1|WP_141139808.1|1725843_1728063_+|NADP-dependent-isocitrate-dehydrogenase
MSKIIYTHTDEAPMLATYSFLPIIEAFASTAGVEVETRDISLAGRIISVFGDYLTPEQQIGDALAELGELAKKPEANIIKLPNISASIPQLKAAIAELQGQGYNLPDYPDNPSSDEETAVRSRYDKIKGSAVNPVLREGNSDRRAPLSVKNYARQNPHSMGAWSADSKTNVATMSKDDFRSNEKSVVIESDGTIALQLVREDGSVKVLKKAFPVLAGEVIDGTVMRAAALDEFLAAQVARAKEEGVLFSAHLKATMMKVSDPIIFGHVVKAYFSELFETYGKQLTAAGLSPNNGLAAILSGLEELPEDVRAGVKALIQKGLDDGPALAMVDSDKGITSLNVPSDIIVDASMPAMIRSSGHMWGPDGQEADTLAVLPDSSYAGIYQVVLDDCRAHGAFDPTTMGTVPNVGLMAQAAEEYGSHDKTFEIQEAGTMQIVDGSGAVLIEHKVAPGDIWRACQAKDAPIRDWVKLAVTRARASKTPAVFWLDETRAHDRNLIAKVNEYLKDHDTEGLQIEIMSPVKATAFTLERIRKGEDTISVSGNVLRDYLTDLFPILELGTSAKMLSVVPLMNGGGLFETGAGGSAPKHVQQLLKENHLRWDSLGEFLALAVSFEHLATTTNNARAQVLADTLDKATGTFLLENKSPSRRAGELDNRGSHYFLARYWAEELAKQTEDTDLAASFAAVAKELSSNEDTIVSELAAVQGSAVDIGGYYRPDEAKASAVMRPSATLNKVIATLN
>NZ_CP041188.1|WP_141139807.1|1725384_1725612_+|hypothetical-protein
MIAFWKSAKKSAVHGRHFAAEGSAQGASPEIEAYAAGLQLRDVDPIHSFTATEELRRQDPKYVQLWPSDIPHKRR
>NZ_CP041188.1|WP_168223507.1|1724172_1725141_-|hypothetical-protein
MTRTSSLAASFLSLSAAAIIALVGAGGAHAAPSASDDKAVPSVARATADSTGAADYWTSDRMRAAIPGDVLASKALERGKSSSAADVLQGPKTTVTGTKGKPSLAQPADPVAHIGKVFFTLGGQNYVCSGNVVSASNKSTVATAGHCLNEGPGKFATNFVFVPKYKDGVAPYGAWSASEYFTPTQWSVGGDISYDTGFAAMDPRQDGALLEDVVGGSGVAFNEARGLKYTAYGYPAAKPFNGERLWICTGTATNDTTNPQFGTQGIPCDMTGGSSGGPWFIGSGSDGFQNSINSYGYTPKPVMYGPYWGAAIQEAYFSAAAA
>NZ_CP041188.1|WP_141139805.1|1722104_1723799_+|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MSVTQPDRVSIDRVPIRRALISVYDKTGLEDLAKGLHAAGVKIVSTGSTAKKIAAAGIPVQEVEEVTGSPEMLDGRVKTLHPRVHGGILADRRVPAHMETLAGMEIETFDLVVVNLYPFVETVKSGAAQDDVVEQIDIGGPAMVRSAAKNHAAVAIVVDPTFYGSVVTAAAEGGFDLKTRRRLAAKAFAHTASYDNAVATWTASQFLDEDGDGVIDWPAYAGLSLERSEVLRYGENPHQQAALYVDKAAPAGIAQADQLHGKAMSYNNFVDADAALRAAFDFAEPAVAIIKHANPCGVAVGSADAADPIADAHAKAHACDPVSAFGGVIAANRTVTAAMAQTVAGIFTEVVIAPDFEPAAVEILAKKKNIRLLALPEGYGRYPAEMRQVSGGVLVQMSDKVDADGDNPANWTLAAGEAADEKTLADLAFAWTACRAAKSNAILIADHGAAVGIGMGQVNRLDSCRLAVERANTLGVSVESDVEGAGGAAGPSTAEATVAPERARGAVAASDAFFPFADGLQILIDAGVRAVVQPGGSVRDEEVVAAANAAGITMYFTGARHFFH
>NZ_CP041188.1|WP_141139804.1|1720609_1721962_-|MFS-transporter
MNTYTTVPSGEQVVQELPWRWKVQGRIFVIGGLGFMFDAWDVTLNGILIPLLSTHWALAPGEVAWVGTSNLIGMALGAFVWGTIADTIGRKKAFTATLLIFSLFTVLGAFSPDLIWFCVFRFMAGFGLGGCIPVDYALVGEFTPRKQRGKVLTAMDGWWPVGAALAGFVSAGLVAVFGDWRLTMLVMVLPALLVFWVRRSVPESPLFLIRKGRRDEAAKVIDDLVAATGAEPRAYSLPDAQEVPRLSAGSAWHQLRLVWQFNWKITATAWALFFSILLVYYLSLTWMPRILIGAGFAEYKAFVTTASMAAVGLLGVVVAALLVERVGRKWILAITGPLSALTLVIVAIVVDIPTAAVFWLLVFGFVVQIAIPVLYAYVSELYPTELRGTGFGWASTFSRLGAGFGPLIFANYFWPELGLATSFALAGGLVLVAVLWMAFFSPETKQRRLE
>NZ_CP041188.1|WP_141139803.1|1719942_1720506_+|phosphoribosylglycinamide-formyltransferase
MRIVVLVSGTGSNLQSVIDAVKAGELDVEIAAVGADREGTYGVERSSEAGLETFVVNFNSFPTRDEWDAALTARVASYAPDVVVSSGFMRIVSADFIAAFNGKYLNTHPALLPAFPGAHGVRDAMAYGVKVTGCTVHWADAGVDTGPIIAQEAVTIEPGDTEESLHERIKVVERRLLVNTLAALAAA
>NZ_CP041188.1|WP_141139802.1|1719474_1719903_-|hypothetical-protein
MNNTPEPAGQQRTKQPLSDAAKDSLTKTRNLFRIFIVTVLGAFFVYQLDVNYLWLTGILTAASFVLGILLLVRSARLKESKLVLFGTISGLVVSLIMLLVILATALFFRQVQDFQACSREALTDQALSNCRVQLESSLPGLR
>NZ_CP041188.1|WP_141139801.1|1718130_1719447_+|hypothetical-protein
MKLRADQTGDRGLPMPLWLQGGLETAQAAIISALLAVVPIVAVWATAGFQNTAFDSLARLAGQGWLLIHGVPLQLAVVSGEAGAAGSPGSGLLTLVPLGLTLIPFLLAWRAGRRLARASYTDQLWQALLGSWVVYSAFGAATGFVCRTADVVINIWMAMLIPLIPFALGMVIGARREAGSWSRLIGVDAVDWISRTSQHSRWAGSYLGSAAKAGCVALLAAFALAGVLLAVDLFIHWNLVIAVYEALDAGAVGGAALTIAQLGYLPNLVVFALAWVSGSGFALGVGSQVGPLGTATGPLPSIPVFAAIPSGPLDYGFMALVLPVLAGILAGWWFLREGENHFDEWLSIKFDARWFTATVSTLALGALVGAVSGLLAAGLAWLARGSAGLGRLTAIGPDPLWMGLWIAAEVGIGVVIGYAAGPWLERQQHVDEEAELAR
>NZ_CP041188.1|WP_141139812.1|1731369_1731993_-|hypothetical-protein
MNSVVPAGTVTSVAVPVAGVVDTAADDLIETVAPPLAEAVPVLEPVLQPVVDLVDATVAAVPVTLPDLIVDGIAVAGEASTIADAAAGPTAGAEHSADDAPGRSTNAADHFRAATGASSALAKTSARTLPLAPGNTWTVDPSMPQAPAPAGPASGVGSGASPSGVSGSAAWLDEFGFNLPLSGAFPVSGSPQHVPSPVSFDPGSSPD
>NZ_CP041188.1|WP_141139813.1|1732466_1733537_-|Gfo/Idh/MocA-family-oxidoreductase
MSAPIATPWLSSQSDPDPRSATGKRLRWGVIATGGIARSVSQDLALLPDAELYAVSSRSQGTAESFAADYGFTKAYGDDDGVPGYQRLLTDDSVDVVYVATPHAQHHEIVLAALNAGKHVLCEKAFTINGREASELVALARERKLFLMEAVWSRFLPGMQRAFEIAASGELGDVHWVTADLGFPAPYSPTSRLWARQDGGGALLDISVYPLLWAVGTLGFPQTVSATGFINDDGVDAQNALTLGYNHGAQAQLTSSLLAYGPRTATVAGSLGYLQSVGSINNPRELVIGIGREGLRTEAFDVVGIGYTYELREVTRCIQQGLAESPVMPLEDSINTMRLFDGVRGQLGVSYPNDAH
>NZ_CP041188.1|WP_141139814.1|1733571_1734264_-|ATP-binding-cassette-domain-containing-protein
MIEVKNLVRTFNSGDRTIKPVNDVSFVLEQGTLACIVGKSGSGKSTLLSLLGALDKPTSGDVVVNGVSLAGMPDGKLTEYRRRDIGFVFQQFNLIPNLSALDNVMLPMEFAGVRRAERRQRAMDLLEQVQLDTEKQVRRINRLSGGEQQRVAIARALANEPKLILADEPTGNLDEQTGDHIIELLSSLSRDHNTTILVVTHDRALANKTDRRFRLQQGRLTEEPARRALV
>NZ_CP041188.1|WP_141139815.1|1734266_1735733_-|FtsX-like-permease-family-protein
MSVLARSVGNAFRNKVRTAAVVAVLAVAIGLALAMLVANQAVGAKVQELNASVGTVLTVNPAGGQGFEGGGEPLTAEQAATAAAVPNVTSVVGTSSLRLRNAAEAAAQTAAGTQAGPGGGQGGPGGQNATTLTTSLTAAIDAGTLGGRNQAANGTTGTTTQPVRSLPITATGIGGEMDSTGKALTITEGTGLGDYTAESANALLGTTLAEKNNLAIGSTFTINDQTFTVAGLFDSGTTFGNNALYLTLPTAQTVAELPGELSSMIVTVDSMENLGAAKTALESALGTDKADVTQGQNLESAVSSLGSVKNISFIAFVAALGTAGLIILLIMVMLVRERRREIGVLKAIGAPNRTIGLQFVLEALVLVAMGSAVGAAVASFASGGIASALISTNTSTTAATTGRAAGVAGGAGFPGGGAGFPGGGAGFPGGQGGPLGGASQLLTSVTASASPGVIAAGIAAVFGVAIIGALVPALLTARIRPIEVLRGE
>NZ_CP041188.1|WP_141139816.1|1735996_1737091_-|substrate-binding-domain-containing-protein
MRMIGKVGKAAAIAAIAALALTACGRAEPGTTSTTGAGGFEKNSSIGVALPQKTSENWVLAEKLFNDGLSSAGFKPDVQFANGGVSEQQNQISAMITKGAKVIIVGAIDGAQLGTQLKQAKDSGATIIAYDRLLLNTENVDYYVAYDNFKVGVLQGQALLDGMKAKKPTGPYNIELFAGSPDDANAKVFFDGAMSILKPKIDDGTLKVLSGQASFEQAVTQGWKAENAQRRADTLLTGSYGTASLDGVLSPNDTLARAVLTSVKAAGKPLPIITGQDSEVESVKSILAGEQYSTINKDTRKLVEHAIVMVKDLQAGKKPEINDDKSYNNTVKTVPAFLLPPVIVTAANVKTAYVDDPVLGPLTK
>NZ_CP041188.1|WP_141139817.1|1737141_1738425_-|sugar-ABC-transporter-permease
MNALKKLFGGNTRQFGMIFALVALIIFFQFTTEGRTLTPGNVINLFNGNSYILILAIGMVLVIIAGHIDLSVGSVAAFVGVTVALAIRDWGIPWYAGVLLGLLLGALIGAWQGLWTAYVGIPAFIVTLAGMLLFRGFNQFVGKSNTIPVPNDFQYLGSGYLPEVGPSTGYNNLTLLIGLAAVTFVIFSEIRRRRTAKVLGAEVAETWVVVLKLVLVCAAILYATYLFATGRPGTSFPIPGLILAVLVLIYGFVSSKTVVGRHIYAVGGNRHAAELSGVQSKKVNFLVMMNMSILAGLAGMIFVGRSTASGPFDGVGWELDAIAAVFIGGAAVTGGVGTVIGSIIGGLVMAVLNNGLQLLGVGADLTQIIKGLVLLIAVAFDVYNKSQGKRSIIGLMMQSFNRPTGGPGTPLQPDETTSTKETIAREA
>NZ_CP041188.1|WP_141139818.1|1738470_1740027_-|ATP-binding-cassette-domain-containing-protein
MSSHTTHTDPVILEMRSITKEFPGVKALADVSLRVKAGEIHAICGENGAGKSTLMKVLSGVYPYGSYDGDIVYQSEVQQFKDIRASEHAGIVIIHQELALIPELSIMENIFLGNEPTKRGVINWAEARQRSTELLARVGLREDPDTPIKEIGVGKQQLVEIAKALNKSVKILILDEPTAALNESDSQHLLDLMLGLKGKGITSIIISHKLNEIEQIADSITIIRDGKAIETLDVKADGVDEDRIIKGMVGRALESRFPDHTPKIGEVFFEVKDWSVGHPAIQDRLVCKGSNFFVRRGEIVGFAGLMGAGRTELARSVFGRSYGRFINGHIYKDGKEVVLKNVRQAIDAGLGYVTEDRKSLGLNLLDDIKATTVSANLKKISRNSVVDTAKEFAVAEQYRKALRTKTPSVEEGVAKLSGGNQQKVVLAKWMFTDPDLLILDEPTRGIDVGAKYEIYGIIQQLANQGKGVVVISSELPELLGLSDRIYTIFEGAITGVLNKEEASQESLMKLMTSARKAA
>NZ_CP041188.1|WP_141139819.1|1740158_1741349_-|ROK-family-protein
MSATPRSTRSKPKNPGSQSALRQLNQQRIIETLMSGPSTQAELARQTGLSTATVSNIVKIMQETGLASTEPITSSGRRALNVRLNSNGAVAVGIDFGRRHLRVVLASLSYHVIAEESVLLPLGHQAEEGIRAAVALLDKLLQQSGVDRTLVVGAGVGIPGPIDRRTGTVAQGAILPEWVGINILHHLEETLKIPVFVDNDANLGAWSEVTWGPHSGVSNLMFLKIGSGIGAGLILNGAPYYGTVGITGEIGHATIHEHGLVCRCGNRGCLETIASTTTMIELLGRGEDPPLTPADIVRKALARDSATLRVVDDAGLAVGRALGNVANLINPEVIVVGGPLAGLGDLLLDPIRRGLIRHAVPVIGETTTLTMSSLGDRAEALGAAALVFQHAGIRRA
>NZ_CP041188.1|WP_141141990.1|1741564_1742344_+|carbon-nitrogen-hydrolase-family-protein
MQANARVLDIEANRAALDAAAGAAAAEGAAVLVTPELFPVGYAPLRLRAELDPARLPAIRETLRGIARRHGIGLVYSLPSVTDSGSWHITSTLVDGAGAELLTYAKVHLFGDDERAAFSPADAGPAVVDFNGFRTSMVICYDVEFPETVRAAALGGAELLLVPTALAHGFETVPQVLLRARALESQLTIAYANHCGTEDGCEFLGGSVVAGPDGSLLAAAGPGTEILYAKVDPDAAGNARGLVPYLRERRPDLYRSWGI
>NZ_CP041188.1|WP_141139820.1|1742322_1743948_-|PucR-family-transcriptional-regulator
MQPEAAEHLDAVTLGQFLAALPRDLTVLHDAGNAGTPLRWVEPSELEDPTPYLLDGEFVLTAGLPFKDDGGTKESADAYVRRLVGAGVAALGFGLQPYFDAVPDHVLSACQTHRLTLVQIPSSVPFAAIGLEFSKLLESGNARVFRQLADTNRQLMRAVLSARPEHELLSALAQRVPVWAQLFGADGRVRARAAAAGTGGTSPAAAVEPSALQPMLKRLLAGNGPRVETDSLPANGSALVFGHPLRSTKDATLGALILGTDRPLTPAQNSVVSSVVGLLELLVRQRTSGSLAPSQLATALLLHPDSLAVGSTRQLNVLRDLLAQSVSGTRSGALRVVQGIRADASAPASSDGPVRELLQWRRLFDTKMVELTDYGFAAVTRLKVDDALLHEVEDLGWRLVVGDPTEMAGLPAAYQRASSLRPRVQASGQSVRVDDVTWSVTGLLGRGAGTMLAARLLEPVLAQEPDRRSSQLSVLKAWLGENGNWDASAKVLGMHRNSVRRQINALGELLAMDLGSAQARAELWIALQYVDGVEPQMPQDR

Crispr_ID: NZ_CP041188_4

• CRISPR_ID: NZ_CP041188_4
• CRISPR_location: 4313836-4313970
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP041188_4

Consensus_repeat	Method
CAGTACGGGCAAAACGCCCCGCAGTATGGCCAG	CRISPRCasFinder

spacers of NZ_CP041188_4

>4.1|4313869|69|NZ_CP041188|CRISPRCasFinder
CCCACACCGCCGGCGCCACAGTACGGGCAAAACGCCCCGCAGTATGGCCAGCAGACTCCCCCGGCACCC

CRISPR arrays and Neighbor proteins around NZ_CP041188_4

CRISPR arrays

The CRISPR arrays of NZ_CP041188_4

>merge|NZ_CP041188|4|4313836-4313970|CRISPRCasFinder
CGATACGGCGAGAACAGCCCGCAGTTCGGGCAGCCCACACCGCCGGCGCCACAGTACGGGCAAAACGCCCCGCAGTATGGCCAGCAGACTCCCCCGGCACCCCAGTACGGGCAAAACGCACCGCAGTACGGGCAA

>NZ_CP041188|4|4|4313836-4313970|CRISPRCasFinder
CGATACGGCGAGAACAGCCCGCAGTTCGGGCAG	CCCACACCGCCGGCGCCACAGTACGGGCAAAACGCCCCGCAGTATGGCCAGCAGACTCCCCCGGCACCC
CAGTACGGGCAAAACGCACCGCAGTACGGGCAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041188.1|WP_141142181.1|4310661_4311240_-|redoxin-domain-containing-protein	unknown	unknown	gnl|CDD|239264
NZ_CP041188.1|WP_141141503.1|4317561_4318668_-|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl|CDD|236435
NZ_CP041188.1|WP_141141495.1|4304753_4306853_-|Hsp70-family-protein	unknown	unknown	gnl|CDD|212667
NZ_CP041188.1|WP_003792170.1|4316951_4317050_-|AURKAIP1/COX24-domain-containing-protein	unknown	unknown	unknown
NZ_CP041188.1|WP_082576055.1|4313139_4313589_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP041188.1|WP_058931377.1|4317206_4317419_-|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl|CDD|200128
NZ_CP041188.1|WP_141141498.1|4311298_4311979_-|histidine-phosphatase-family-protein	unknown	unknown	gnl|CDD|366010
NZ_CP041188.1|WP_141141502.1|4315877_4316696_+|HAD-IB-family-hydrolase	unknown	unknown	gnl|CDD|273654
NZ_CP041188.1|WP_141141501.1|4314645_4315383_-|redox-sensing-transcriptional-repressor-Rex	unknown	unknown	gnl|CDD|235486
NZ_CP041188.1|WP_141141499.1|4312180_4312729_+|YceI-family-protein	unknown	unknown	gnl|CDD|377274
NZ_CP041188.1|WP_141141504.1|4318914_4319916_-|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl|CDD|368448
NZ_CP041188.1|WP_141141494.1|4302596_4304750_-|LuxR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|197715
NZ_CP041188.1|WP_141141505.1|4320091_4321594_-|rhamnulokinase	unknown	unknown	gnl|CDD|198349
NZ_CP041188.1|WP_141141496.1|4307009_4308134_-|c-type-cytochrome-biogenesis-protein-CcsB	unknown	unknown	gnl|CDD|274447
NZ_CP041188.1|WP_058931385.1|4309890_4310646_-|cytochrome-C-biogenesis-protein-ResC	unknown	unknown	gnl|CDD|280792
NZ_CP041188.1|WP_141141507.1|4323631_4324810_-|L-rhamnose-isomerase	unknown	unknown	gnl|CDD|274239
NZ_CP041188.1|WP_141141506.1|4321590_4323627_-|bifunctional-aldolase/short-chain-dehydrogenase	unknown	unknown	gnl|CDD|236241
NZ_CP041188.1|WP_168223586.1|4301372_4302530_-|hypothetical-protein	unknown	unknown	gnl|CDD|227596
NZ_CP041188.1|WP_104060455.1|4315460_4315715_-|glutaredoxin-family-protein	unknown	unknown	gnl|CDD|368604
NZ_CP041188.1|WP_141141497.1|4308133_4309891_-|cytochrome-c-biogenesis-protein-ResB	unknown	unknown	gnl|CDD|377471

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP041188.1|WP_141142181.1|4310661_4311240_-|redoxin-domain-containing-protein	gnl|CDD|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	1.06594e-32
NZ_CP041188.1|WP_141141503.1|4317561_4318668_-|3-deoxy-7-phosphoheptulonate-synthase	gnl|CDD|236435	PRK09261, PRK09261, phospho-2-dehydro-3-deoxyheptonate aldolase; Validated.	0
NZ_CP041188.1|WP_141141495.1|4304753_4306853_-|Hsp70-family-protein	gnl|CDD|212667	cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family. HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs.	4.33138e-95
NZ_CP041188.1|WP_141141505.1|4320091_4321594_-|rhamnulokinase	gnl|CDD|198349	cd07771, FGGY_RhuK, L-rhamnulose kinases; a subfamily of the FGGY family of carbohydrate kinases. This subfamily is predominantly composed of bacterial L-rhamnulose kinases (RhuK, also known as rhamnulokinase; EC 2.7.1.5), which are encoded by the rhaB gene and catalyze the ATP-dependent phosphorylation of L-rhamnulose to produce L-rhamnulose-1-phosphate and ADP. Some uncharacterized homologous sequences are also included in this subfamily. The prototypical member of this subfamily is Escherichia coli RhuK, which exists as a monomer composed of two large domains. The ATP binding site is located in the cleft between the two domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of divalent Mg2+ or Mn2+ is required for catalysis. Although an intramolecular disulfide bridge is present in Rhuk, disulfide formation is not important to the regulation of RhuK enzymatic activity. Members of this subfamily belong to the FGGY family of carbohydrate kinases.	0
NZ_CP041188.1|WP_141141497.1|4308133_4309891_-|cytochrome-c-biogenesis-protein-ResB	gnl|CDD|377471	pfam05140, ResB, ResB-like family. This family includes both ResB and cytochrome c biogenesis proteins. Mutations in ResB indicate that they are essential for growth. ResB is predicted to be a transmembrane protein.	9.0695e-174
NZ_CP041188.1|WP_058931377.1|4317206_4317419_-|helix-turn-helix-domain-containing-protein	gnl|CDD|200128	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376). [Unknown function, General].	1.54126e-17
NZ_CP041188.1|WP_141141498.1|4311298_4311979_-|histidine-phosphatase-family-protein	gnl|CDD|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	3.93641e-32
NZ_CP041188.1|WP_141141502.1|4315877_4316696_+|HAD-IB-family-hydrolase	gnl|CDD|273654	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled here are all bacterial. The IB subfamily includes the enzyme phosphoserine phosphatase (TIGR00338). Due to this relationship, several of these sequences have been annotated as "phosphoserine phosphatase related proteins," or "Phosphoserine phosphatase-family enzymes." There is presently no evidence that any of the enzymes in this model possess PSPase activity. OMNI|NTL01ML1250 is annotated as a "possible transferase," however this is due to the C-terminal domain found on this sequence which is homologous to a group of glycerol-phosphate acyltransferases (between trusted and noise to TIGR00530). A subset of these sequences including OMNI|CC1962, the Caulobacter crescentus CicA protein cluster together and may represent a separate equivalog. [Unknown function, Enzymes of unknown specificity].	4.22143e-53
NZ_CP041188.1|WP_141141501.1|4314645_4315383_-|redox-sensing-transcriptional-repressor-Rex	gnl|CDD|235486	PRK05472, PRK05472, redox-sensing transcriptional repressor Rex; Provisional.	4.57165e-109
NZ_CP041188.1|WP_141141499.1|4312180_4312729_+|YceI-family-protein	gnl|CDD|377274	pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	3.47817e-53
NZ_CP041188.1|WP_141141504.1|4318914_4319916_-|prolyl-oligopeptidase-family-serine-peptidase	gnl|CDD|368448	pfam05448, AXE1, Acetyl xylan esterase (AXE1). This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyze the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan.	4.75396e-119
NZ_CP041188.1|WP_141141494.1|4302596_4304750_-|LuxR-family-transcriptional-regulator	gnl|CDD|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	1.96856e-15
NZ_CP041188.1|WP_141141496.1|4307009_4308134_-|c-type-cytochrome-biogenesis-protein-CcsB	gnl|CDD|274447	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction. [Energy metabolism, Electron transport, Protein fate, Protein modification and repair].	2.21733e-82
NZ_CP041188.1|WP_058931385.1|4309890_4310646_-|cytochrome-C-biogenesis-protein-ResC	gnl|CDD|280792	pfam02683, DsbD, Cytochrome C biogenesis protein transmembrane region. This family consists of the transmembrane (i.e. non-catalytic) region of Cytochrome C biogenesis proteins also known as disulphide interchange proteins. These proteins posses a protein disulphide isomerase like domain that is not found within the aligned region of this family.	3.11376e-36
NZ_CP041188.1|WP_141141507.1|4323631_4324810_-|L-rhamnose-isomerase	gnl|CDD|274239	TIGR02635, putative_xylose_isomerase, L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters. [Energy metabolism, Sugars].	0
NZ_CP041188.1|WP_141141506.1|4321590_4323627_-|bifunctional-aldolase/short-chain-dehydrogenase	gnl|CDD|236241	PRK08324, PRK08324, bifunctional aldolase/short-chain dehydrogenase.	0
NZ_CP041188.1|WP_168223586.1|4301372_4302530_-|hypothetical-protein	gnl|CDD|227596	COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only].	1.15343e-06
NZ_CP041188.1|WP_104060455.1|4315460_4315715_-|glutaredoxin-family-protein	gnl|CDD|368604	pfam05768, DUF836, Glutaredoxin-like domain (DUF836). These proteins are related to the pfam00462 family.	2.41482e-13

Protein sequences

>NZ_CP041188.1|WP_082576055.1|4313139_4313589_+|hypothetical-protein
MPKAGFSGMFSVTGLPTELKVSYWIWLIGGMLGVLGGLFGVLGSLALFVVAPGLAVVVLLLVLVALALAAAQIVLVLKMKEGKEWARLALTIVAGVSLVLAVLGGSVGGGGMGQGIGNNWLGFLISAAATVLMWLPNSQAWFNAAKGRA
>NZ_CP041188.1|WP_141141499.1|4312180_4312729_+|YceI-family-protein
MTLPADVTTGTWTLDNSHSEIAFTVRHAGISKVRGQFKDAVATLDLADNVADSKISATIQTASFDSGDVNRDGHVRGEDFFDVETFPEISFVSNSLVAKGNSYELTGDLTIKGVTRPVALETEFNGVAVDPFGMTRAGVSAETTISRKDFGLTWNAVLEAGGVLVSDKVAVNLELAFIAPAA
>NZ_CP041188.1|WP_141141498.1|4311298_4311979_-|histidine-phosphatase-family-protein
MPQSTVHLLRHGEVHNPDRVLYGRLPEFHLSELGREMAQMLADHFAERAARGARIVYLAASPLVRAQETAAPTAEALGLELHTDSRIIEAENYFQGMKVTKAELRKPKHWPHLVNPFRPSWGEPYKAQAARVMSAVEDARLRAIELATGDYGTDGPEAIMVSHQLPIWATRLSAEGRPLWHDPRKRECTLTSITSLVFDDDGSLLRVEYSEPAAVLLPGAASTPGA
>NZ_CP041188.1|WP_141142181.1|4310661_4311240_-|redoxin-domain-containing-protein
MLVAGGAALTALTLGLSACAQEDALAKQAKAGDNKNYVAGDGSVTEFTAADRKAAVAINGTLFNGTQIAPADFQGKVTVLNFWFAACAPCRVEAPILEELHQDFKDQGVQFFGVNLRDEKGTAEAFDKTFNLTYPSFDDKNGGVLLAVSGLVPPGAVPTTLVLDKQGRVASRVLGEIQKGTLKALITAAVAE
>NZ_CP041188.1|WP_058931385.1|4309890_4310646_-|cytochrome-C-biogenesis-protein-ResC
MNSPFAETILNGSLLLAIPVALLAGLVSFLSPCVLPLVPGYLGYVTGLSGVDLEKQKRGRMLAGIGLFVLGFSVIFVLLGGAFGQLGTLITGSQNAWITQLLGLLVILMGVVFMGGFGWLQRDAKIHAKPPAGLWGAPLLGLTFGLGWAPCIGPTYSAVQLLSLSGGSSAAKGALLAFVYSLGLGIPFLLIALAVRRGMGVMSFFRTHRLAIQRIGGGILVVLGLLMASGVWGTWVTELQYWFQTDVKLPI
>NZ_CP041188.1|WP_141141497.1|4308133_4309891_-|cytochrome-c-biogenesis-protein-ResB
MSERVKENKKSPAPVAAAKTEAALPVLGPVEMLRWAWTQLTSMRTALFLLLLLAVAAVPGSLFPQRPANPSIVTQYIKDNPDYGKLLDTLQLYDVYSSAWFSAIYILLFISLIGCVVPRAIAHYRAMRSQPPRTPKRLSRLPEYGTLVVPADAGLPASDAIRSAAGVLRKRGYRVDVRDDDGARPSLGAERGFAKEVGNLVFHTSLIGVLVSVAVGGLFGYSGQRILVEGDTFVNTLVGYDQFTPGTNFQSSQLQPYSIQLDKFDVLFDRESPGKIGQPIDFNAEVTTRETPDSPAKQEVLKVNDPVTLGGTSIYLTGNGYAPVVTIRDGAGNVAMQGPVVAKLQGDNYYSSLVIKVPDARPEQLGFVGFFLPTAFVTEEGVSFSGDPDLFNPRLTLNSYFGDLGLDAGSPQNVFELDVSDLTPLNARNLDAGGITLAPGSTYTLPDGKGSISFDSVKRYVGVDIHHNPGQLYALIFALLAVGGLIVSLYVNRRRVWVRTGTHEDGRTMVEYGLLARGEDHRLAAEAVAVRKLLSDEWQLADSDSVESADDSDSSVTQQTPSRQGDNGADSVTTPAGPTGPKKDQ
>NZ_CP041188.1|WP_141141496.1|4307009_4308134_-|c-type-cytochrome-biogenesis-protein-CcsB
MPFAINETMGQYSELFMLLAAGTYTVAFIAFAWDLAKSSRALRAIDLKAAEAAGTRVPAMAGAGASAGSAAAADSVATDRVDSHLAGPVGRVERPSSSVAKRGGDASGAGQTADADMRYAAERRVPARVAVALTVLGVLIHAAGVITRAVGAGRVPWGNMYEFLTTGAFVAVAVFLLVLIRRDLRFLGTFVVGLAIIMLVAASVAYWTPVGHLVPALQSYWLIIHVSIAVLSSALFTLTFAMSALQLVQSHRQKTVAAGGADKLGFMRLVPSALSLENLSYRINAIAFIGWTFTLMFGAIWAEKAWGRFWGWDTKEVWTFVIWVVYAGYLHARATRGWTGTRAAWLSIVGYLCVVFNFTIVNQFFNGLHSYSGL
>NZ_CP041188.1|WP_141141495.1|4304753_4306853_-|Hsp70-family-protein
MNYVLALDVGTSFTAAAIVRINHDASRVPESLPLGLRGTAVPSVVYYPEEGPILVGEAAERRGLDSPERVVREFKRRVGDDVPIAVGTLSLPAEDVFATMARWVADRAEEREGAPPSDIILSHPASWGAHRTQLVLAALASKDLTKVTLISEPEAAALHYAAQVRVEAGSTIAVYDLGGGTFDTAVLKKTDAGHFELLGRPEGIEGLGGADFDAAVLRYVADHAGQGLANLDPSAPGALAALSRLRRECVEAKEALSADSEASISVLLPGFQQQVRLVRSDFEAMIREPIRETVDALERSLQDLGLTPDDLSAVLLIGGSSRIPLVAQLISEQLDRPIAVDADPKSSICLGAAVAALRAQPEGAAQPAAMTAQLADAVVLTQADGHHGTAGRRASWSRHADAGAAALAAGAHAAGAHAGGRKGGAHGPRPTVRLTAVAAVAALFTGLTATAAQGPDGLGSLSAMFAPSADAAKDTPSAAPPDGTGGPGSGGPAAGAGAAVAGAGAAQLPVQGIEASAQLQDSGAPASSTGLDIAASSTSRPLTEAGQPAAGGAAAGTGTSGEPAQGSGGSTPGTVTSPTTDPPPDVVPLPVDPVPDPTTDPAPGPTTDPAPDPTTNPTTDPAPDPTTDPAPDPTTNPTTDPAPDPTTDPAPDPTMGPAPEPSSAPAPEPDPTTDPAPEPDPFAEPSPTTDPVPTTEPAV
>NZ_CP041188.1|WP_141141494.1|4302596_4304750_-|LuxR-family-transcriptional-regulator
MAANHTQPERELHEAGTSAPAGAADMAQQLRGENAAVRELLLALSVGFTLPGPLPGELAHKLEGPDGPGLDAVVNRAEASGLLLTDGTVVGPAQHALLNGTPTARVHALQRELVGFVSAEGQPFGDLARELARGGLADPRVAAELEAAADKALQLNPGLAVQLYSEALLAGANELRIAARRAQAAAATGDLDAAGRIIDGLLVSSDPPDVRLGVDVAASVWAQRGLLVRSADLYAWLGPANMGRSAPLAAVAMIGSGDRAGAEEAFPAGSAPVSPTLLAVALSQTGKGVMESMERDPHKGLPLLIHASDMLNASGSALPLPDTPGALAALVALHSGESHVADTIIRSAVTARQGGDAAKPRLHLLQAWSAMQQDDPGEARLAINEASKANHWPLVPRDEFMCAALEVGLARRSGDVHDLVMAWERAREAMLHTAVDLYSLLPWGELMIAAARLRETRRVAHYLDEAWVLLTKLGEPPLWAVPLHWAAVQAALLNKSPADLAPHAAALVRASEYSHMATVFAAAGKAWVSVLAGRFQATDVENAARGLKVVGMPWEGARLAGHAAAQADERRDMMRLLACARDLHPQSGTTGPPAGPSPEVRRGAAENNHGAHPDASGLSEREKEVARLVLEGKTYREIGEAIYISPRTAEHHIARMRRRLGAENRSDLLVRLRLALTADHPGQDGATAAPSHETGKPLMRGIRVRGHNPMSGPYEGP
>NZ_CP041188.1|WP_168223586.1|4301372_4302530_-|hypothetical-protein
MPTLANQLVQFLMGLFNNPAAAQEFLHDPERSLEGAGLRGVCSADVDAAMPVVLDYAPITVNASSFDREYNTGGNTSWTGGIGGAGHTPPPGGGGSGHTPGHDHHDDHAHAVQQLHHVVNNYSYTSTVDDRDTITDQSVNQNIWADGDVNQWFDNEAVIASGDKALAAGDDNNVRDSYNTTDSYNTDNTTDNSTDNSITAGGDVNIGNRDLDVADSFNTDVDIDVADSFNDNSDNSDNSDNSDNSDNSVDNSEDNSVKIEDSFQDNSDNSTEDNSLVVNDNSDNSIEDNSTEDNSTEDNSTTDVAIEDSFQDNSDNTTNTEVAVEDSFNDNSQAETTEVEVVDSFNPVEVVVEDSFQDNSTEDNSTNTDVAVDTDVAVEDSEISL
>NZ_CP041188.1|WP_141141501.1|4314645_4315383_-|redox-sensing-transcriptional-repressor-Rex
MEGIVTSLDPSPHAVQGTEAGHSAQPVHGAESTKQIPPAAVARLTIYLRALNTLLSDGVERVSSESLAEASGVSSSTLRKDLSYVGSYGTRGVGYEVQYLSRHISAALGLTHDWKVAIVGAGNLGKALARYGGFESRGFDVVAIFDADQMVVGNEVGWLRVSDSADMEAVLQRTGANMVVLALPAHAAQAVCDRVVAAGVHSILSFAPVMLQVPEGVNLRKVDMATELQILAYHAQRAQTPDQTA
>NZ_CP041188.1|WP_104060455.1|4315460_4315715_-|glutaredoxin-family-protein
MAKPEVVLITKADCHLCAGARDAVGRVTASLGLGWTEQQVDELPELRERYAEEIPVVLVDGIQRDFWKIDEARLERVLKRAMAQ
>NZ_CP041188.1|WP_141141502.1|4315877_4316696_+|HAD-IB-family-hydrolase
MPEEKYVAVVTQPDALMQTGEAAFFDVDNTLMKGASLFHVARKMHQRGAFTLTQAAGFAWKQFKFVARGENMDDVHAVRDSALTLAEGITVEDVKALGEEVYDEMIASRIWPGAKALAQQHLRVGRRVWLVTATPIEVAAVISTRLGLTGALGTVGEIADGMYTGRLVGDILHGSAKAVAVQALAHAEGLDLKRCWAYSDSYNDIPLLTLVGHPVAINPDARLRRHARDNNWPVYDFRSGRRAATLGLKAATAGGAVYGLWRGYSRMRGPRA
>NZ_CP041188.1|WP_003792170.1|4316951_4317050_-|AURKAIP1/COX24-domain-containing-protein
MGSVIKKRRKRMAKKKHRKLLRKTRHQRRNKK
>NZ_CP041188.1|WP_058931377.1|4317206_4317419_-|helix-turn-helix-domain-containing-protein
MSAEQNFSNAKFLTVAEVAEVMRVSKMTVYRLVHSGEMPAVRFGRSYRVPESAVEQYLKGAVVDGHSETA
>NZ_CP041188.1|WP_141141503.1|4317561_4318668_-|3-deoxy-7-phosphoheptulonate-synthase
MSTATATPAKSTSNLRVSEFTPLPSPQELIAELPLDARVTDVVERGRDEVRAIMDGVDDRLLVIVGPCSIHDPKAGLEYARRLVSQAEKHRDDLLIVMRTYFEKPRTTVGWKGLINDPRLDGSHDMVTGLRTAREFLQQVTALGLPTATEFLEPISPQYMADLISWGAIGARTTESQIHRQLASGLSMPIGFKNGTDGDLQVALDACGAAAAAQAFLGIDGDGRAALVATAGNPDTHVILRGGRKGPNYSAADVESASAKLAGKGLNPRLIVDASHANSGKSHHRQAEVALEIGAQLEDGGEAAQAIAGVMLESFLVGGAQNLDVTEHAAGRAELVYGQSVTDACMDWDVSVSVLDQLAASARKRRTA
>NZ_CP041188.1|WP_141141504.1|4318914_4319916_-|prolyl-oligopeptidase-family-serine-peptidase
MPLFDLPLDQLRGYTSRVTPPADLQDFWDATLDEARTFPLNATFGPVENHLSVIDTFDVTFAGYDGAPIKGWLHLPANRRAGSRLPVVVQYIGYSGGRGLVNQDTKWAQAGYAHFIMDTRGQGYGGILGQTADPHPSAGEVAYAGLMTRGAGSREDYYYRRVYVDAFRAVEAAQSHPEVDPARVVLAGISQGGGIVVAVAGLVAGRLDGVIAALPDVPFLQDFPRSIDIAARGPYPEIAAFLGRHRDRYEPMLAVLNYFDGVNLARAATAPALYSVAQMDDVCPPSTVFASFNAYGSGSAAQKEIEVYRFNNHEGGQEHHWIRQLQYLRELLG
>NZ_CP041188.1|WP_141141505.1|4320091_4321594_-|rhamnulokinase
MSTTASHAPGGVDGGGTSARSVFAAVDIGASSGRVILGRVLDGRAAAAGSVELETVHRFPNGVVEIDAGLRWDFDALFAEVLAGLTAAATVAALQGETITSIGIDTWAVDYGLVNKAGELTAQPYSYRDDRSRAAVAPVHRKLDPARLYGTTGLQFLQFNTLYQLATERDLDGLQALLIPDLIAFFLTGVRRTESTNASTTGLFDAVAGDWATEFLTALGLRKDLFPPLIEPGETVGTLLPEIASRVGLPAGTNVVAVGSHDTASAVAAVPAQEEDFAYISSGTWSLVGLELDHPVMTEASRAANFTNERGVDGTIRYLRNMGGLWLLSECQRTWAAEGHTPELADLLAAAAALPPGGPQINPDDSAFIAPDNMPHRIRATVRHTGDILPDNQAAITRCIMDSLATGYARAIADAERLAERTVDVVHIVGGGSQNGLLCQLTADTTGKKVMAGPVEATAVGNVLVQARAAGHVSGGLTELRRLVVSSHELQTFTPQLSRL
>NZ_CP041188.1|WP_141141506.1|4321590_4323627_-|bifunctional-aldolase/short-chain-dehydrogenase
MTNTTVEDLIARSNRLGADKRNTNFAGGNTSAKGTEKDPVTGEDVQLLWVKGSGGDLGTLKAGNLAVLRLDRLNALKNVYPGVEREDEMVAAFDYCLHGKGGAAPSIDTAMHGLVDAAHVDHLHPDSGIAIATAVDGEALTTKIFGNKVLWVPWRRPGFQLGLDIAAIKDANPQAIGTILGGHGITAWGATSEEAEQNSLWIIEQAEKYIEENGKAEPFGSRLTGYGPLPEAERRAKAAALAPVIRGLASTDKPQLGHFSDDAVVLDFLAAAGHPRLGALGTSCPDHFLRTKVKPLILDLPAEASIEDSINRLKELHTAYREDYQAYYDRHADQDSPALRGADPAIVLVPGVGMFSYGANKQTARVAGEFYLNAINVMRGAEAISTYAPIEESEKFRIEYWSLEEAKLARLPKPKSHASRIALVTGAASGIGKAIATRLASDGACVVIADLNLENAQAVAAELGGADVALGVQADVTDEAQIAAAIQEAVLAFGGLDLVVNNAGLSISKPLLETTEKDWDIQHNVMAKGSFLVSKAAAKVMIAQDMGGDIIYISSKNSVFAGPNNIAYSATKADQAHQVRLLAAELGEYGIRVNGINPDGVVRGSGIFAGGWGAKRAAVYGVDEQELGKYYAQRTLLKREVLPEHVANAAAVLTSSELSHTTGLHIPVDAGVAAAFLR
>NZ_CP041188.1|WP_141141507.1|4323631_4324810_-|L-rhamnose-isomerase
MNDVATVLGRLGELAIEVPSWAYGNSGTRFKVFGTPGTPRTVQEKIADAAKVHELTGLAPTVALHIPWDKVDDYAALKEYAAGLGVGLGTINSNTFQDDEYKFGSLTSSSESVRRRAVAHHLECIEIMHATGSQDLKIWLADGTNYPGQDDMRGRQDRLAESLQEIYAGLGENQRLVLEYKFFEPAFYHTDVPDWGTSYAQTLALGEKALVCLDTGHHAPGTNIEFIVMQLLRLGKLGSFDFNSRFYADDDLIVGAADPFQLFRIMCEVIRGGGFGTSAGENSHVALMLDQCHNLEEKIPGQIRSVLNVQEMTARALLVDTAALGEAQRSGDVLAANGVFNDAFYTDVRPILAEWRESRGLPADPMAAFRASGYQKQINEDRIGGQQAGWGA

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041188_1	1.1|822145|22|NZ_CP041188|CRISPRCasFinder	822145-822166	22	NC_020548	Azoarcus sp. KH32C plasmid pAZKH, complete sequence	234803-234824	1	0.955
NZ_CP041188_1	1.1|822145|22|NZ_CP041188|CRISPRCasFinder	822145-822166	22	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1155817-1155838	2	0.909
NZ_CP041188_2	2.1|1295093|32|NZ_CP041188|CRISPRCasFinder	1295093-1295124	32	NC_014213	Meiothermus silvanus DSM 9946 plasmid pMESIL01, complete sequence	340755-340786	8	0.75

1. spacer 1.1|822145|22|NZ_CP041188|CRISPRCasFinder matches to NC_020548 (Azoarcus sp. KH32C plasmid pAZKH, complete sequence) position: , mismatch: 1, identity: 0.955

tcaacctcggcgcctgcaccaa	CRISPR spacer
tcaacctcgacgcctgcaccaa	Protospacer
*********.************

2. spacer 1.1|822145|22|NZ_CP041188|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.909

tcaacctcggcgcctgcaccaa	CRISPR spacer
ccaacctcggcgccttcaccaa	Protospacer
.************** ******

3. spacer 2.1|1295093|32|NZ_CP041188|CRISPRCasFinder matches to NC_014213 (Meiothermus silvanus DSM 9946 plasmid pMESIL01, complete sequence) position: , mismatch: 8, identity: 0.75

------accaccgggcccctcagctcgcaagctcgctc	CRISPR spacer
ggaaagacc------ccgctcagctcgcaagcccgctc	Protospacer
      ***      ** **************.*****

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1251707 : 1262068	20	Arthrobacter_phage(50.0%)	NA	NA
DBSCAN-SWA_2	1265337 : 1272475	8	Gordonia_phage(42.86%)	portal,terminase	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP041188|1251707:1262068|DBSCAN-SWA
CATGAAGGCCGCCGCCCTAGAGGACACCACCTGGTCCGAGGACGCCGTAGCAACCATCATCGGCATCTCCCACACGCAGGAGATATTCACGGCCGACGACCTCGCTAGGGAACTCCGCAAGGCACCCTTCCCCAACGCGGTAGGCATCGCATTCAGTCAAGCACGCCGCGCCGGATACATAGAGCCGGTCAGCTACACCACATCAAGTCAGACCGCCCGCAAGCACGGAGTTGTGCGGACGTGGCGCCGCAAAGTCAACGAAGGGTTCTCGCTGTGAACTGGACACATTTCCTCGGCCTCGTCCTCTGTATCGGCTTTGGTGTCGCCGCACTCCGGGCCATCCGCCTTGATCGCGCCGACGAGTACCACCTTATGCACGGACCCAAGTCCGGCTGCGTCGATTGCGCGGCGAAGTAATGACCGCCGTAGCTCTGGACATCGCCGCAATCGTGGGTGAAATGGAAGACCAGCCATGCGAGAGCTTGCAGCACGGCGTGGTGGATGAATTTCATGACGACGGCCCCGCTACACATTATGGGCGAGTCCACTGCCAGTCATGTGGCCTCGATGTTATCAAGTCATACTGCGCACAGTTCATCCGGTGCGTCTTCATATTGCCAACTTCTGAGTGCATCTGCGGGGCATCGTTTCCCACGCCTGAACTGGTGACGATCCTAGGTCCGGTCAGGCCATGAACCCGGATCGCTACCTAGAAGAACCCGAGCCCACCGATTACGAAGCGCTCGACGCCGAGCAAGATACCCGCGCCGCCGATGATGCGGACGCAGCCCGAAAGGAACGATCATGACCACCAACACCCACGCCGCCCCCTGGACCCTGACCCGCTACATAGCTGACCTGTTCTCGCCGCCCACCAAGCGTGACAAGGATTTCGCTGTCATCATGTCCGGTCGCGAGTCTGCGGCCCGAGCTCTATTTAGCGAGCAGGTAAATGGATCGAAGCTCGACATGCTCGAATACGACAACTCCCCCCTCCTCCGCGGTGGCTGGCTCGCTGAGGCTGACCGGCGGATTGCGGGCGGTGTGAAGGTGGAGCTGTCCGAACTGCTGATCCTGCGCCACTGGGGATACACGCCCGCCGAATGGGTTGCGCTGCCTAACGAGGTACGTGCGGCCAAGAGGGACGGCTATTACGAGGCGAAGGGGTTGGGGGCATGAGGGAGCGGGACCCTATCGAGAATGCCGACCAGCCTCCCGAAGTTGACATCCACGGCGGCCGGGACAAGCAGCTACCGCCCGCCGAAGCCGCAGCGACTCGCATCCGTGAGTTCGTTTCATGGTTCGGCGACGGGCAGGTCTATACCGGCGACGTCAACAGCCCGCCGCTCTACGCCCGAGACCTCGAAGCCCTCGCTCGGAACATATTGGGGCAGCCATGATCCGCACCGAGTACGCCGCCCGCCTAGCAAGTGGCTTGATCTACCTCAAGGACTGGTCAGCACCGTTCGTCGCCAAGTTCGTAACCGACATGGCCCCGATCACCCCCATCCACATGGTCACCCGCACATGGGTTGGCGACGTGCATTCGGATTGGGAGCGTGCGGCGTGAAGGCGCTCGAACTCACCATCTACCCGCCGATCCATCGCCCACGCTACGGCTACGGAATCGACCCCTACCGCGAGCAGTGGAAACGGGAACGCAATATCATCGAGGCCAAGCGCCTCACGGACGCCGAACTTGCCGCCGAGTACTGGCGGTCTACGTGGGACGCCCAGAGCTGCTACCACGACGGCAGCGACGAGGACATAACCGCAACCCGCAAAGAATACGAAGCGCTCGAACGTTTCGCAACCCTCCCCCACTACGACGAGGACCCAAGATGACCATCACCGACCTGAACGCACTATCCGCCGAACTCACCGAGGCCACGCAGCAGGTCGAGGGTGCGACTGAGCAGGTCCGCATTACGGGGCTTGTTTTTGAGTATGATGCGCCGCTGCCCCCGCTCAAGCAGCACCCGCGCACCAAGCTATGGGAACCGGCGTCGGTTGGGTTCAGGGATCTGCCTGAGGCTGGGTCATGAGCCACCTAAGCGGCTTCGGACTGCCGGGGCGGGTGAAGCCACGCAAGCGACACCCCATGACCCCCCGCCAAGCCCAGCGTCTCCGGTTCGGGATCCTCGCCGCACGCCACGCACTCGAACGCGACCGGCTCACCGACGACCAGGTTGACTACCTCGAAAACTGCCGCGACATCGGCTGGCGGAAAGAGGACGCATGGAAGGCGTACCGGCGGGAAGCGATCAACTTTCAAAGGAGGCGGCATGCCTAATGGACCACGACGCCAAGAAAGAAAACTGGTCAAGGGCGACTAATCGGTACTGCGACTGCCCACCATTCCGGTTTTCGCCAGCGCACAATCACAAGCGCGAGACCAACCCAGACTGCCCGGAACACGGCAGTAACCACGACGGAGCCTAGGCGGGCTCCTTTTTTATTGCCCATAGGGGGACAAATTGACCTTGCATATTTACAACGACGTCGAACAAGGTTCGGACGAATGGCACCAAATGCGACGAGGGATCGCGACCGCCTCAGTAGTGGGGCAGCTCATCACGCCCAAAACAATCAAGCCCGCAGCCAACGACACGTCACGCAGCCTCGCTGCCACGCTGGTAGCCGAGCGCATCACTGGATTCACTGAGCCGTTCCACGAGACCGCAGATATGGAACGCGGCACCTTGGATGAGCCCTACGCCCGAGAGATCTACGCCGAGCACTACGCGCCGGTTACCGAACTTGGCTTCATGGTCCGCGATGACTGGGGATTCAAGATCGGATACTCACCTGACGGACTCGTTGGCGAGGATGGCTTGATTGAGATCAAGTCACGCAAGCAGCGGATCCAGCTACAGACCATCCTTGACGATGAAGTGCCGCTGGCGAACATGGCGCAGATCCAATGCGGACTACTCGTCTCCGGGCGTAAGTGGCTGGACTACGTGAGCTATTCCGGTGGGATGCCGCTCTACGTCAAGCGGGTCCTGCCCGACCCTAAGTGGTTCCACGCGATCTTCCAGGCTGTCGATGCCCTCGAAGAATCTGCCGCCACAATGCTCGACACCTACACGGCAGCCATCGATGGCAGGCCCGCAACCGAACGCATAGACCACTTCGCAGAACTGGAGTTCACCTTCTGATGGATATTTCAAAGGCACTACTAGCCAAGTCGGACCAGCTGAATGCGGCCGACCTGACCGGAGCCCCAATCGTGGCGACCATATCGGCGGTGGTTGGCGAGCCGACTAAGCCGATCATCGAACTCGAAGGCATGGATGGCCGGCCCTGGAAACCCGCAAAAGGGATGCTTCGGGTGATCGCTAGGGGTTGGGGCACTGAGACGGATGCATTTGTTGGCCGTCGCGTGAAGCTCGTCAACAATCCCGAAGTGATCTACGCGGGCGAGAGGGTCGGCGGCGTCGAAGTTGTCGCAATGTCACACATCGACGGCGCATTTACCATGCCGGTCCGCATCAGCCAGAAGAAAGTAAAACAGCACACCGTAGAAGTGCTGTCCGAGCCGCCGACCGAGCCTTGGATAGCGCAGTGGCAGGCAATCAAGAACGCACTCACCGCCGCCGGGTATGAGGGTGACGGGCCAGCGATGCTCGCCACGGCCGGGCAAGTCATCGGCGCCGCATGGGAACACCCGAACAAGATCAGCGCCGAGGATGCGCAGAAGATTCTTGCGGTAGTACGCGAAGACAACCATCAGGAGCAGACAGCATGACCAACCACCGCACCACCGGCAACGTGTCCGTCTCGGTCCTCGCCGGCCACATCAAAGCCACATCCCAGCCGATCCACCCGGAAATCGGGCAGCAGGTCAGCATGGGTGACGGGCTTTACTTCTCAATCACCCCGGCCATTGCTAAGCAGTGGATCGAAACCCTAACCCCCATTGCAGAGGAACGCACCGCATGACCCGCATAATCACCATCTACACGCAGCCATCCTGCCAGCCATGCAAGGCGACTAAGCGCTGGTGGGATCGGCGCGGCATCCGATACCAGGAAGTAGACATCACCACCAGCCCGAAGGATGCCGAAGCGATCCGAGCCCTCGGATTCAAAGAAGCACCCGTCGTCATCGTCTCGACCGGCGACGCGGAAACCGACCTCATGTGGTCCGGTTTCGACCCGAACAACCTCACCAAATACACCACAACGGAAGCAGCATAGACATGGCAGACATCAAATTCACCGGGAATGTTGGCAAGGACGCGGAACTCAGATTCCTCCCCTCGGGCCGTGCTGTGCTCAACTTCAGCGTGGCCGATTCCAAGTCCAAGAAGCTCGATAGCGGCGAGTGGGAAACGCTCGCTGAGCAGTGGCTCGACTGCGCTATATGGGGCGAACTTGCAGAGTTCTACGCGGAGAAAATCCGGCGTGGCGCCCGCGTCACGGTCTACGGCGACTTTATGTCCCGCAAGTACGAAGCCAAGGACGGATCGAAGGGGACCAGCCTGGATGTCAACGTGAAGGGCGTGGAAATCTACCCGCCAAAGAATGGCGGCGGTTCTAGCCAAAGCGGCAATCGCTCGAATGGTGGTTCCGTTGGTTCTAGTGCGCAAGAAGACCCGTGGGCGACTCCCGGCGTATCCAACGCGGGCGGCTGGGGTAACAGCCCTGCCACTGGGGAGCCTCCGTTTTGATCGCCCGCTACGAGATGGCGCACCTGTTGTTCATCACGGACAACAGGAGGGCTAGGGACGCTGAACGGGAGTGGCGCGACGCTGAACCTCAGCACCTTCTCCCGTATTACGTCATGGCCGATGCGCTCATTGCGGCCGGATGGGAGAAGCCATGAAAACCAAACCCAAGGGCATCCACGCCAATTTCCGCACAACCTGTGGATGCGGCGCCGAGATCACCATCACGAACGGGCGCGTGGACTTTCACGAGTGCGAACGAATCACCGGGACGCTCGATGAAGTCCTAGCCGCGCTCGACAACCGACAGGAACCATAATGGCAACCATCAAACCCCTGCTCGCAAAGATCCTCATCCAGGTAGGCGCCGACGAGCCCAAGGAAATCGGCACCATCGAGATTCCGATCAACGTCTCCATTCCCGGGCCGAGCGTAATTCACCGATATGACACAACGATCAACGTATCAACCCAGACCCCCGAAGTGATCGCGGCAGAAGTCGCGAAGAGATTCAAGCCCCAACCGTAGCAATCCGCACTCCCCAAGCCGCGCACACCGCGGCTTTTTTCATGCCCGAAACAGTGCCCGGCGCCCGACCCTCACCCGGTTGGGCGCCGCTGGCCAGTACCAGGAAGGACCATCCGCCATGAGCGACGCCAAGTACACCGAACTCGCGCAGCAAACAAAGTACCTCGCCAACTTCCGCGCCTACCGCAACGAGGCCAAAACGAGGCGCGATGAAGCGATAGCCGAAGAAGAAGAGACCATCCAAATGGAGACTAAGCGCATCGAGGCGGCAGAAGCTCGGATCCGGGAGCTCGTCGCGGAACTGGGGCTCGCATGAACAGCCCCGCCGCCAACCCGCGCACCAAGGAATGCACCGGCCTCGTGACCTGCCCCGCACGCGCCCACCTACAGGCCTGCTACGTGGCACTGAGGGAGCGCTAGGCATGGCGTATATTTTCCGCGGCACGAACCGCGACATTGACGTTCCCGAGAAGTGCGGCACACGAGCTGGACACGCAGCACACTTCACTGCCGGGACGAAACCATGCAGCCCGTGCAACGAAGCCCATAGCGCCTACATGCGCGATTGGCGGCGGAATAAGAAGATCCAGATGCGGACCTCATGCGGAACCTACGCCGGCTACATGCGACACAAGCGGGCTGAGGGCTACCCCTGCGAGTACTGCTTACGGGCATATGCCGAATACATGGCCGAGTATCGCGCTAACCGAAAGTTGGTGGCCTGATGGGGTACGTCTACCGCGGCACGGACTTCTCCATACCCGAACCCCTGGTCGAACCGAGGAAGCGGCAACCGCGCATCCCCGGCCCCGCGCAATGCGGAACCCGCAACGGATATGCCGCGCACTTTCACAAGAAGGAACCGTACTGCGACCCATGCCGGGCTGCGAATAGTGCCTACACCGCGGAATACAAGCAGCGCTTGAAGGCAAGGCAGATCGCATGATCGATCCATGCTGCGCGCTATGCAAGGGCCCGCATGACATCTGCCTCTCACGGCATTCCTGCCAGCACCACAAGATCGCACAAGCGCAGGACGACGCCAATCATCAAGCCCGGCAAACGGTACGCAGGCCAACCGAAGACCAGGCAATCCGCAACATTATGAGCAGGGGGCGCGGGTCATGACGTACATCTACCGAGCCGACGAAGACATCCAGCGAGAACCAACCGTGCCATACATCTACCGCACCATCGAACTTCCACCCGAAGTCACCTATCCCGAGCGCAAGAAGTTCAAGCCTGAACTCTGCGGCACTCCATCGGGCTACCAGCAACACGGAAGATTCAACCAGGAACGATGCCCAGACTGCCTAATCGCCTACAGCGAATACCAGCGCGAATATCGGGCGGCGAGATTGGCACCGGAAATTAGTCCGAAAGCTTCCACGATTGGAAGTGATAACCCCAAAGAAAAAGGAGTGCGGAATGGCACGCATTAGGACCATCAAGCCGGACTTCTGGACCGATGGAAACATGGTCAAGCTTTCACCGTTTGCGCGGCTGCTCTACATCGGAATGTGGAACTTCACGCTATGCGATCACGGCCATGTTGCCGATGACGCAATGAAACTGAAGCTTCAGATACTCCCAATGGACAACGTGGACATTGACGCGCTGCTGGCCGAGATTATGAATCAGGGCCGCGTCGTGCGGGTTGAGGATGGCGACGGTAGGACATATCTGCTGGTCAAACGCTTTGAGGACCACCAGAAGATCGATCCTCGCTGGAAAACACGGTGCCCCGCGTGCGCTCAAGTGGACTCACTCACCCTCACGGAAACTCCGGTGAGTTTGGGTGAACTCACCGTAACTCCCGAACTCTCACCTGATCTCACCCTAGGAAGGGAAGGGATGGGAAGGGATGGGAAAAAGAACCTCCCATCAAAGCCTGCGGCTTCGACGGACTTCGACACCTTCTGGGCTCAGTACCCGCGCAAGGTCGGAAAGATAGCCGGGAAGAAGGCTTTCGACAAGGCAATCAGGCTCACCTCTCTAGAGCAGCTTCTTTCAGGCGTTGAACTACTCAAGCGCGAAACCGCAGGCAAAGAACTTGAGTTCATCCCTCATCCCGCTTCCTGGCTTACTGCCGGCCGCTGGGATGACGAGCCATCCACAAAACCCGCCGCATCCAGCCCATGGAGTAAGGACTTCCACAAATGAACGATCCGACTTACGACGCCGAGTGCTACCGGTGTGATCTGGACATCCATTATTGCGGCGGCTGCGGCGATCCTCTAAGGCATGACGGCAAGGAATTTGACGGCACGAAGCATAAGGAATGCACATGAGCCCCTACTATCAAGACGAAGAAATCACCCTCCATCACGGCGACTCGATAGCAGTCGCCGTTTCGCTGCCATCACTTTCCGTCAACTCGATCATCACAAGCCCGCCATACTTCGGCTTGCGTGACTACGGGGAGGATGGGCAGCTTGGGGCTGAGGCAACAGTTGAGCAGTATGTCGGCAACCTCGTGACCCTCTTCCGCGAACTGCGGCGCGTGCTGGCTGACGACGGCACTCTATGGCTCAACCTCGGAGACTCTTACGCCCGCGGCTTCGGCGGCGGCTCACCCGGCAAGAAGTCTGCGAGCAACGCGGGCTCATACCAGGGCCGCGCTCCGGGAAGGAAGCCTGCTGGACTGAATGGCAAGGACTTGATCGGGATCCCTTGGCGGGTTGCACTTGCCCTACAGGCTAGCGGGGGCGGACGGCAAGCCAAGGAATAAGCGGACAGTCTGGAGCCTGCCCACGCAGCCATTCCCCGGCGCCCACTTCGCCACATTCCCGCCCGCACTAGTCGAGCCGTGCATATTGGCATCGACTAGACGCGATGGGGTCGTGCTTGACCCATTCAGCGGCTCTGGTACTACGGGCATGGTCGCAAGGGATTTGGGGCGCCGATATGTAGGCGTGGACCTGAATGCCGACTACCTGAAACTCTCGCTCGATACGCGGCTGCAAAGCGCTGCGCTGGACCTTGGAGCAATAGCATGACCGAACCAACCACCCACGACGCCGTAGCCGAGCAATCAGTCCTTGGCGCGATGCTCATCAGCCGTGACGCTATCCCGGACATCGCGGACATTCTGGATGGCGGCGACTTTTACCGGCCGGCGCACGAGACGATCTACCGAACGATCCTGGACCTTCACGGCTCAGGTAATCCGGTGGACGCGATTACGGTCAACGACGCGCTGACGCAGATGGGCGAGATTGCCCGCGTAGGTGGCGTGATGTACGCGCACGAACTGGCGGGCATCGTCCACTCAGCGGCCTCCGGTGCCTACTACGCGGAAATAGTCGCACACGCAGCCACACGTAGGCGTCTCACCGCTGCTGGGCGGAAGATCCAAGACCTAGCCGGGAACGGTGGCGACGTTGACGAGTTGGTTGAGGCTGCACGGCGCGAAGTTGACCAGACCTCACGCGCTACCGGATCCACCGTCTCATTCTTTGGCGAAACCATTGACGCGATGCTCGGGACGTTGGATGAGGAAATCAACCACCACCCCACGCCATGGGCCGCGCTGAATGACATTATCGGCGGACTAAGGCCGGGGGCACTGTACGTAGTCGCGGCTAGGCCATCAGTGGGCAAGTCGGTCATTGCGCTGAACCTGGCGCAGGGGCTACTTGAACACGGCTCGGTGGCGTTCTCATCGTTGGAAATGTCCAACAACGATGTGCAGATCCGGGCAGTATCGTCCGACCTGAATCTCGACGTGTCCCGGCTGATCGAGCGGAACCTTACGCCGGGAGACTGGGCAAGGATCCGTGACCGTAGAGCGGTCTGGGGCGATGTCCCGCTGGCTGTGGACGACCGCTCCGGTGTCACCATTACCGACATCAAGCGATTTGCCCGCAGCGTGAACCGACGCAAACCATTGGCCGGGATCGTCGTGGATTACTTGCAACTCATGTCCCAGCCGCACGGAGACAAGCGCCCCCGTCACGAGTTCGTCGCGGACATGTCACGGCAACTCAAAATCATGGCAATGGATATGCAGGTGCCCGTTATCGCCCTATCCCAGCTCAACCGAGGATCCACCCAGCGCGAGGACAAGATGCCACAGATCAGTGACATGCGGGAATCCGGCGCCATCGAGCAGGACGCTGACGTAGTGATCCTGCTGCACCGCGAAATCATGGGCGACAACCGGAATGACCTGTCGATGCTGGTTGCCAAGAATCGGCACGGCGCGACAGGACTGGCCGAATTGCAGTTCTGGGGGCATTACTCGAAAGCCCTTGACCGCGGACTCACGCCGCAAGCCGCGCTCAGGCAAGCCGCATGAACCCCCACCCAACCCACATCGAAGCCGTAGCGGACACTGCGGCTTCTTCTATGACCGGAGAGAACATGACGGCCAAGATCGCAAGCCTTGGCGCCTTCTGCGATAAGTGCGGATGGGGCCTCAGCGACAGTCCCGTGATGATGCGCAATTGGGTTTACCTGCACAACCAGAACTTTCACCAGGAGGAATCATGAAACTTCTCGACTTATTCTGCGGCGCTGGTGGTGCCGGCCGTGGCTACATGGATGCCGGGTTCGACGTGACCGGCGTGGACATCGAACCGCAGCCCGACTATCCGGGCACGTTCATCCAGGGTGACGCAATCGCCTACCTTGCCGCGCATGGGCACGAGTTCGATGCCATTCACGCGAGCCCACCCTGCCAAGCCTCCAGTGCGCTCACTAAGGGCACGAACAAGGGCAAGGTGTACCTGAACCTCATACCGGCGACACGGGCTCTCCTGGCGCTGCATGACAAGCCGACCGTGATTGAAAACGTGCAGGGCTCGGACCTAAGGCGCGACCTCACGTTGTGCGGGGAAATGTTCGGGCTGGGGGTCATTCGGCACCGATACTTCGAGACGTCCGGGTTTACGCCTATCGCACCGGCGCATAAGCCTCACCGTGGACGCGTCGCCGGCTGGCGGCACGGCGTCTATTACGAAGGCGTGTACAGGCAAGTTTACGGAGCCGGGGGAGGCAAGGGCACCGTAGCTGAGTGGCAGGAAGCCATGGGGATGTTCCACACGAACAACCGGAAGTCCATCGCAGAAGCGATCCCGCCGCAATACGCCAGGTTTGTGGGCGGGCAGATAATGCAGCGTCTCGAATCCGAAGCCGCCATCCGTGGGCTGGCCGCGTGA

Protein sequences of DBSCAN-SWA_1

>NZ_CP041188|1251707:1262068|1255453_1255651_+|WP_141139471.1|DBSCAN-SWA
MTNHRTTGNVSVSVLAGHIKATSQPIHPEIGQQVSMGDGLYFSITPAIAKQWIETLTPIAEERTA
>NZ_CP041188|1251707:1262068|1253547_1253751_+|WP_141139467.1|DBSCAN-SWA
MTITDLNALSAELTEATQQVEGATEQVRITGLVFEYDAPLPPLKQHPRTKLWEPASVGFRDLPEAGS
>NZ_CP041188|1251707:1262068|1258030_1258348_+|WP_141139476.1|DBSCAN-SWA
MTYIYRADEDIQREPTVPYIYRTIELPPEVTYPERKKFKPELCGTPSGYQQHGRFNQERCPDCLIAYSEYQREYRAARLAPEISPKASTIGSDNPKEKGVRNGTH
>NZ_CP041188|1251707:1262068|1255910_1256381_+|WP_141139473.1|DBSCAN-SWA
MADIKFTGNVGKDAELRFLPSGRAVLNFSVADSKSKKLDSGEWETLAEQWLDCAIWGELAEFYAEKIRRGARVTVYGDFMSRKYEAKDGSKGTSLDVNVKGVEIYPPKNGGGSSQSGNRSNGGSVGSSAQEDPWATPGVSNAGGWGNSPATGEPPF
>NZ_CP041188|1251707:1262068|1256696_1256906_+|WP_141139474.1|DBSCAN-SWA
MATIKPLLAKILIQVGADEPKEIGTIEIPINVSIPGPSVIHRYDTTINVSTQTPEVIAAEVAKRFKPQP
>NZ_CP041188|1251707:1262068|1258334_1259069_+|WP_141139477.1|DBSCAN-SWA
MARIRTIKPDFWTDGNMVKLSPFARLLYIGMWNFTLCDHGHVADDAMKLKLQILPMDNVDIDALLAEIMNQGRVVRVEDGDGRTYLLVKRFEDHQKIDPRWKTRCPACAQVDSLTLTETPVSLGELTVTPELSPDLTLGREGMGRDGKKNLPSKPAASTDFDTFWAQYPRKVGKIAGKKAFDKAIRLTSLEQLLSGVELLKRETAGKELEFIPHPASWLTAGRWDDEPSTKPAASSPWSKDFHK
>NZ_CP041188|1251707:1262068|1259901_1261206_+|WP_141139478.1|DBSCAN-SWA
MTEPTTHDAVAEQSVLGAMLISRDAIPDIADILDGGDFYRPAHETIYRTILDLHGSGNPVDAITVNDALTQMGEIARVGGVMYAHELAGIVHSAASGAYYAEIVAHAATRRRLTAAGRKIQDLAGNGGDVDELVEAARREVDQTSRATGSTVSFFGETIDAMLGTLDEEINHHPTPWAALNDIIGGLRPGALYVVAARPSVGKSVIALNLAQGLLEHGSVAFSSLEMSNNDVQIRAVSSDLNLDVSRLIERNLTPGDWARIRDRRAVWGDVPLAVDDRSGVTITDIKRFARSVNRRKPLAGIVVDYLQLMSQPHGDKRPRHEFVADMSRQLKIMAMDMQVPVIALSQLNRGSTQREDKMPQISDMRESGAIEQDADVVILLHREIMGDNRNDLSMLVAKNRHGATGLAELQFWGHYSKALDRGLTPQAALRQAA
>NZ_CP041188|1251707:1262068|1252881_1253106_+|WP_141139465.1|DBSCAN-SWA
MRERDPIENADQPPEVDIHGGRDKQLPPAEAAATRIREFVSWFGDGQVYTGDVNSPPLYARDLEALARNILGQP
>NZ_CP041188|1251707:1262068|1261396_1262068_+|WP_141139480.1|DBSCAN-SWA
MKLLDLFCGAGGAGRGYMDAGFDVTGVDIEPQPDYPGTFIQGDAIAYLAAHGHEFDAIHASPPCQASSALTKGTNKGKVYLNLIPATRALLALHDKPTVIENVQGSDLRRDLTLCGEMFGLGVIRHRYFETSGFTPIAPAHKPHRGRVAGWRHGVYYEGVYRQVYGAGGGKGTVAEWQEAMGMFHTNNRKSIAEAIPPQYARFVGGQIMQRLESEAAIRGLAA
>NZ_CP041188|1251707:1262068|1255647_1255908_+|WP_141139472.1|DBSCAN-SWA
MTRIITIYTQPSCQPCKATKRWWDRRGIRYQEVDITTSPKDAEAIRALGFKEAPVVIVSTGDAETDLMWSGFDPNNLTKYTTTEAA
>NZ_CP041188|1251707:1262068|1253102_1253276_+|WP_168223489.1|DBSCAN-SWA
MIRTEYAARLASGLIYLKDWSAPFVAKFVTDMAPITPIHMVTRTWVGDVHSDWERAA
>NZ_CP041188|1251707:1262068|1251707_1251983_+|WP_141139463.1|DBSCAN-SWA
MKAAALEDTTWSEDAVATIIGISHTQEIFTADDLARELRKAPFPNAVGIAFSQARRAGYIEPVSYTTSSQTARKHGVVRTWRRKVNEGFSL
>NZ_CP041188|1251707:1262068|1254866_1255457_+|WP_141139470.1|DBSCAN-SWA
MDISKALLAKSDQLNAADLTGAPIVATISAVVGEPTKPIIELEGMDGRPWKPAKGMLRVIARGWGTETDAFVGRRVKLVNNPEVIYAGERVGGVEVVAMSHIDGAFTMPVRISQKKVKQHTVEVLSEPPTEPWIAQWQAIKNALTAAGYEGDGPAMLATAGQVIGAAWEHPNKISAEDAQKILAVVREDNHQEQTA
>NZ_CP041188|1251707:1262068|1256532_1256697_+|WP_168223490.1|DBSCAN-SWA
MKTKPKGIHANFRTTCGCGAEITITNGRVDFHECERITGTLDEVLAALDNRQEP
>NZ_CP041188|1251707:1262068|1253272_1253551_+|WP_141139466.1|DBSCAN-SWA
MKALELTIYPPIHRPRYGYGIDPYREQWKRERNIIEAKRLTDAELAAEYWRSTWDAQSCYHDGSDEDITATRKEYEALERFATLPHYDEDPR
>NZ_CP041188|1251707:1262068|1261202_1261400_+|WP_141139479.1|DBSCAN-SWA
MNPHPTHIEAVADTAASSMTGENMTAKIASLGAFCDKCGWGLSDSPVMMRNWVYLHNQNFHQEES
>NZ_CP041188|1251707:1262068|1253807_1253999_+|WP_141139468.1|DBSCAN-SWA
MTPRQAQRLRFGILAARHALERDRLTDDQVDYLENCRDIGWRKEDAWKAYRREAINFQRRRHA
>NZ_CP041188|1251707:1262068|1257024_1257222_+|WP_141139475.1|DBSCAN-SWA
MSDAKYTELAQQTKYLANFRAYRNEAKTRRDEAIAEEEETIQMETKRIEAAEARIRELVAELGLA
>NZ_CP041188|1251707:1262068|1254237_1254867_+|WP_168223606.1|DBSCAN-SWA
MRRGIATASVVGQLITPKTIKPAANDTSRSLAATLVAERITGFTEPFHETADMERGTLDEPYAREIYAEHYAPVTELGFMVRDDWGFKIGYSPDGLVGEDGLIEIKSRKQRIQLQTILDDEVPLANMAQIQCGLLVSGRKWLDYVSYSGGMPLYVKRVLPDPKWFHAIFQAVDALEESAATMLDTYTAAIDGRPATERIDHFAELEFTF
>NZ_CP041188|1251707:1262068|1252510_1252885_+|WP_141139464.1|DBSCAN-SWA
MTTNTHAAPWTLTRYIADLFSPPTKRDKDFAVIMSGRESAARALFSEQVNGSKLDMLEYDNSPLLRGGWLAEADRRIAGGVKVELSELLILRHWGYTPAEWVALPNEVRAAKRDGYYEAKGLGA

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141139463.1|1251707_1251983_+	hypothetical protein	V5RAC2	Arthrobacter_phage	3.2e-23	61.9
WP_141139464.1|1252510_1252885_+	hypothetical protein	NA	NA	NA	NA
WP_141139465.1|1252881_1253106_+	hypothetical protein	NA	NA	NA	NA
WP_168223489.1|1253102_1253276_+	hypothetical protein	NA	NA	NA	NA
WP_141139466.1|1253272_1253551_+	hypothetical protein	NA	NA	NA	NA
WP_141139467.1|1253547_1253751_+	hypothetical protein	NA	NA	NA	NA
WP_141139468.1|1253807_1253999_+	hypothetical protein	NA	NA	NA	NA
WP_168223606.1|1254237_1254867_+	hypothetical protein	A0A2L0HJW4	Mycobacterium_phage	7.4e-60	61.9
WP_141139470.1|1254866_1255457_+	hypothetical protein	A0A0M4RD07	Salmonella_phage	6.4e-21	39.6
WP_141139471.1|1255453_1255651_+	hypothetical protein	NA	NA	NA	NA
WP_141139472.1|1255647_1255908_+	NrdH-redoxin	A0A223FZM8	Rhodococcus_phage	8.7e-07	37.8
WP_141139473.1|1255910_1256381_+	single-stranded DNA-binding protein	A0A222ZFS3	Arthrobacter_phage	1.1e-23	42.0
WP_168223490.1|1256532_1256697_+	hypothetical protein	NA	NA	NA	NA
WP_141139474.1|1256696_1256906_+	hypothetical protein	NA	NA	NA	NA
WP_141139475.1|1257024_1257222_+	hypothetical protein	NA	NA	NA	NA
WP_141139476.1|1258030_1258348_+	hypothetical protein	NA	NA	NA	NA
WP_141139477.1|1258334_1259069_+	hypothetical protein	V5RBF8	Arthrobacter_phage	1.7e-26	75.6
WP_141139478.1|1259901_1261206_+	AAA family ATPase	V5R9D2	Arthrobacter_phage	1.2e-205	83.8
WP_141139479.1|1261202_1261400_+	hypothetical protein	NA	NA	NA	NA
WP_141139480.1|1261396_1262068_+	DNA cytosine methyltransferase	B3VH66	Mycobacterium_phage	9.6e-82	69.2

Sequences of DBSCAN-SWA_2

Nucleotide sequences of DBSCAN-SWA_2

>NZ_CP041188|1265337:1272475|DBSCAN-SWA
GATGCATTGGCGCCGCAAGGCGCGTGCGGATGGCCGTGAGGCTAATCCGGCATGGACTGAATCCCGCAAGGCCAACTACCACAAGCGCCGTGCACAAAAGCTTGGCACTCAAGTTGAAGACCTGCGGCCCATTGATATTTACGAGCGCGACATCTGGCTCTGCGGTCTTTGTTCGACGCCGGTTGACCCTGACAGCGCATGGCCGGATCCAATGAGCCCCAGCCTGGACCACGTCAAGCCCTTATCGCTTGGCGGCACTCACACTTACGAGAATGTGCAACTTTCCCATCTTGTATGCAACGTCTCGAAGGGTAATCGAGTAGCGGCTTAGGAGGCTTGCATGGCGACTGTAGGCCGCAAGCCAAAGCCGACACTTCAAGTCGTCCGCGAGGGAAACCCCGGCAAGCGTCCCGTCAAGGATTCCGTAAAGTTCTCCCCGTCCGATCTAAACGAACCTGACTGGCCGAGCGTCTTTCCCGGCAGTTCTGCGGATGAGTTGCGGTGTCGCGAGACGGCAGGCGCGTTGTGGCGGAAGCTCGCACCAACACTTTCCCGCTCTGTCGGGCTGGTGGGCGAGCAGCAGGAGTCGCTCGTGGACTACTGCGTTACATGGGCGCGCATTGAGCAGGGTGAGCGAGCACTGTCCCTCGAGGGAATGATCGTAATGACTGAGCGCGGCCAAGTGAAAAATGCCTGGACGACGATCCTAAATGCCTACCGGTCACATTTGCGTTCACTGATTGGTGAGTTGGGCCTATCCCCGTCAGCCGCAACACGGCTTGGCGGGAAGGCTACCGATGACGAAGACGATCCATTCGACTGAGAATCTGCCGGCGCCTTATGACGCGCTGATTGAGCTTGGCATGACGCATGAGCAGATCATGGACGCCGTCGATAAGACCCCGCTTGTCGTTGCCTTTCAGGCGGACAAGCATCCTGGCGCATGGTTTGACGTTGCGCGGGCGCGTAAGGCGCTGAATGCGATGGGCGCGTTCCGGCACACTAAGGGCCGCTGGGCTGGCGTGCCAATGCGTCTCGGGCAGGGCCTGGATCCTTGGCAGGTTGTATGGGTACTCGCCCCGGTCTTTGGCTGGGTGTACCACGACGAAGAGATTGACACCATCGTCCGCGTCATCCGCTCAGTATGGATTGAGATCCCGCGCAAGAATGGCAAGTCCACCTTTGCCTCTGGCATTTCCGGCGTGCTGCTTCTGGCGGACGGCGAGATGGGCGCTGAGGTTTACAACGCCGCCGGCTCAACGATGCAGGCCGCTCGCGTCTTTGATGATGCAAAGAATATGCTCATGGCGTCCCCGGCTGCCCGTAAGCGCATTGAGCCGCTAAAGGAAGTCATTCGGGTTCCCAAGACGGGCTCCATTCTGCGCGTCCTATCGCGTGTCGCTGAGACCGCCCATGGCTTGAACGTGTCTGGCGCAACGATTGACGAGATCCACACGCTGAGGTTGCAGCGCAAGCTTGTTGAGGCCATCGAAACCGGCGTGGGCGCCCGCGATCAGCCGCTAATTGTGTTCATCACTACCGCCGACGAGGCGGAAGAGGGCACGATCTACGACGAGAAGCACACGTATACACGGAACGTCGCCAACTTTGTCGTCACGGACCCTGGCCATTATGGCGTCATCTGGGCCGCCGATGATACTGACGATCCATTCTCTGAGGAAACGTGGCGCAAGGCTAATCCCGGCCTTGGTAAGTCCCCCACGCTCGCCTATATGCGGCGTGAGTCGAATAAGGCGCAGTCTTCGCCGTCGTACTTCCCGACGTTCTGCCAACTGTCACTGAATCGTCGTGTGCGGAATCAGTCGCGGTGGGTGGACCTGGGCAAGTGGGATGACTTGGGCGGCGCTGAGCGGCAGAAGCTCCGCGGCAGGCGAGCGTGGGGCGGTATCGACCTCTCGGCCGTTTCTGACTTCACGGCATGGTCTGTTTGGGCCGAATCGAACAGACCCGGCTTTGAGCTTGACCTGTTCACGCGTCTATGGGTGCCCGGTGAGCGCATTGAGGATCTCGAGAAGCAGTTGCAGATTCCCTTGCAAAAGTGGATCGATGACGGCCATGTGCACGCTACCGAGGGTGACGTTATCGACTATGGGGCCATCAAGTCGGCCGTAATCGGTGACTGTAACCACTTTGACATGCAGCGCGTTTCCTATGACCGCATGTTTGCCGGCCAGTTGGTGCAAGAACTTGACGAGGAATTGAAGGGCGTTGAGGTTGTGCCGGTTGCGCAGACATTCATGGGCTTATCTCCTGCATCTAAGGAGATGGAGCGCTTGTGGTCTAACGGCGCAATGCGCCACGAGGCCAATCCCGCTATGCGATGGATGGCTTCAGTGGTGGAAGTCAAGAATGACGGGCTGGATAACATCCGCCCCGTGAAGCCTGACCGGAGAAAGTCCAGCGCTCGTATCGATGGCTTTCAGGCTGCCGTTACCGGGCTGGATGGCGTCATCCGTTCCAAGCTCACCAAACCGAAGCGCCGTGTTGTTGTTTCCTAAGAGATGGAGGGCCTAATGGCTGTTTCTAGTGCCCTTGTCCGATTGGACGCGAAGCTTGCCGCAGGTATTCCCGGACTGGACAAGCTGGACAAGTATTTCGAGGGTGAGCAGCCGTTGAAGTACATGGCTGCGGCGATGCAGGCGGAGATTGGCGACCGGGTGTCGCAGCTCGTGCTCAACTGGCTGCGGTTCGGGGCTGAGGCTTACGAGAACCGTCTGGATGTCGAGGGTTTCCGCTATCGGGGCTCAAATTCTTCGGATGATGATCTGTGGGCTACTTGGCAGGCGAATGGGCTGGATGAGCAGTCGCAGCAGGCGCACCTTGACTCACTGGTTCTGGGGCGCTCGTACGTAATCGTGGGCTCACCTGACGCTGCTGGCGACGAGCCTATTGTGTCGGTCGAGTCGCCGTTTCAGGTGTTTGCTGAGCGTAACCCGCGAACCCGACGCGTTTCTGCTGCTGTGAAGCGATGGCAGGAGGGTGAGGGTGAAGATGCGGTCCAGTGGGCGACGCTGTATCTGCCTGATTCGACGGAGACGTTTGCTTTCGCCAAGGAGTGGAAGTCTGCCGGTTCTGCCGATAATCACGAACTCGGCGTCGTTCCTGTCGTTCCGCTGGTGAATCGTCCACGGATTCTGCGGCCTGACGGGCTGTCTGAGTTCCAGGACGTTATCCCGGTGGCTGATGCCGCCAACAAGATGGCTACGGACATGATGGTGTCCGGCGAGTATCATGCGATGCCACGCCGCTGGGCTTCGGCTCTAAAGGCTGACGATTTCGTTGACCCGAACGGCAATCCGATCAATGTTTGGTCACGCGACGCCGGCCGACTATGGGCGACCGAGTCAGCGGAAACCAAGTTCGGGCAGTTCCAAGAGTCAGATCTTGCGGTCTTCCATAACTCGATCAAGCTTTTGGCGCAGCTTGCGTCTCAGATGCTTGCACTCCCGCCGCACTACCTGTCTTTCGTTGGGGATAACCCGGCATCGGCTGATGCTATCCGGTCTTCGGAAACTCAGCTCGTGAAGCGGGTTGAGCGGAAACATACCTACCTGGGCGGTGCTTGGGAGGATGTGCAGCGGCTTGTGCTGCGGTTCAAGACGGGCAAATGGGATCCAGCAGCGCAGGGCCTTGAAACCCAGTGGCGTGATCCTTCCACGCCGACCGTTGCGCAGAAGGCTGACGCTGTTGTGAAGCTGGTCCAGACGGGAATCCTGCCGATTGAGCAGGCGCGCCAGGATCTCGGCTACACGCAGGAGCAGCGCAACCGAATGGTTGAGATGGATGACCGCGCCAAGTCGAATCCTGACATTGCGAACCTGGCTAGGGCTGTGAACGGGGAGTAGCTAATGGTGCCTGATGCCGCTGTGAAGCATTACGAGCAGATGCAGCGGCTCCAGGCGCTTGTCGTCCTCGCGGGCGCTCAGTTGTGGTCTGAGGTTAGTTTGACGGACCTTTCTGGCTCGTGGGCGGCGCAGGTTCCGCTACTGGTTCCCGTGCTGTCTGGCGTGCAGGTGAAGGCCGCATCAGCCGGTGCCTCTTACGGCGCTGCAACACTCGCCGAGCAGAGCTTGTATGAAGCTCCCCAGCATTTCGTAAACCCTAAAGGGTTTAGCGGCATCGCTTCCGATGGGCGCTCGCTTGAGGGGGCGTTATATTCGGCGGTTCCGTACGTCAAGAACCTTATTGGCGGCGGGATGGCACCGGCCCAGGCCCTAAAGTCTGGCGGGTCTTTCTTGACGACGATCACGCGGACGCAGGTTGCGGACGCCGGGCGTGGTGCGGCTGGTGTTGACACGGTGACTCGGAACCGAGTTTCTTATGTCCGAATGCTCAATCCGCCGTCATGCTCGCGGTGCTCGATCTTGGCTGGCCGCGTATACCGCTGGAACGCTGGATTTAGACGCCATAATCGCTGCGACTGCATACATGTTATGACGACGGCAAGGGCTGCGGCTGAGACTGAGGGTCTAATCCATGACCCATACGAGTACTTCAAGTCACTATCCCCTGAGGATCAGGACAAGAACTACACGAAGGCGGGCGCTCAGGCGATCCGCGACGGCTCGGACATCTTCCAGGTGGTCAACTCCCGGCGCGGCATGAAGCCGGGCGGGCTAATGACTACTGAGGGTACGACGAAGCGCGGAAACTTCCGGGCGACGGCCGGCGACTCTACCCGCGGCCGGCGCCTGACTCCCGAGGCGATCTACAAACTGAACGGCGATAACCGCGCCGGCGCCTTAAAGGACCTTGAGAAGTACGGCTACATTCTGCCAGGTGGTCAGAATCCTTTGGGCTCGATCACTGGTCAGCGTGAGGGTTTCGGCGCTCTTGGTCATGGCGGCGCGCATCCGGCGGCTCGCAAACGTGTTGAGGATGCCATCACTAACGGCCGAGATCCCGCAGTGCGAGCAACAATGACCGAGTCTGAGCGCCGCCTATTCGACGCTAAGGCGCGGTGGGAGCTTGTGCAGCAGGGTGTGAACCCTTACGGGGCGCCGTCCATGACGCCTCGCGCCAAGATCAACACTTCGCCACTTACCCCACAGATATCGGCGCAGGTCGAAAAGGACTACCGCCGCTGGGTAGCTACTGGCGGGCAAGTCTTCAAATAACCGGCTATCAAGCCGGGGCTGTAGTGCAGAGGCCTAGCACTTCGCGAGCAGTAGGGATCGAGTCCCGCCGAAAGGCAAGTGGCCACGCACGCGGCAACGTCGGTTCGAATCCGGCCAGCCCACTTTCCTACTCCGGGATGGATGAGGAATGACGAAAAACGATCAGATCAGGAGGCCGTGATGGCTGACGAACTAAACCCACCCGTAGACCCGGTTGAACCGGCTACACCCACCTCCGCAGAGCCGGCAGACCCGCCGGCCGAACCAATTGCGGACGCTACGCCCGACCCTGCCGAGCTTGAACGCCTCCGGGCGGCTCTCGCGAAGGCAAACAAGGAAGCCGAGAAGAATCGGCTTCGCTTGAAGGAAGTTGACGACGCGAAACTGTCAGAGATTGAGAAGGCGCAGCGCGATGCTGCCGAAGCCTCCCAAGAACTGGCAAGCCTCCGCCGTGACAGCCTCCGCCAGAAAGTGGCGCTTGATGCTGGCCTGCCAGCCAAGTGGGTGGCTCGCCTTCACGGCGACGATGAGGGATCACTCCGGGCGGATGCCCTGGAGATCCTCGCTGATCTGAACAAACCACGGATACCCGCCCCCGACGCCTCACAAGGCGCCAGGACTTCGGCGCTCTCCGCGGATGACCAACTCTACGAATCCATCTATGGAAAAAGGAAGGCCTAAACAATGGCTGAATATCTTCCGGTTAAAACCCCGGGGCAGGCGCTGCCGCTCGCAGCGTCCGCAACTATCACGGCCGGCCAGCTTGTAGCTGTCTCCGGCGTTTCCACTGTCGCCGCTGCTGGCGCTAACGCTACCAACTGGCTTGGTGTGGCTGCGTTCGATGCAGCCTCCGGCGACGTCGTCACCATCTTCTCGGGCGGCGTGCAGGAGCTTGTCACCACGGGCACCGTCACGGCTGGCGACCTTGTTGTTGCTGCCGCTGCTGGCACCGTTTCGACGCTGGCCGCTGTCACTACCCCGACCGCTGCTGACGTGACCAACACCCGCGCCATCCTTGGCGTTGCCCTGACCACTGCTACGACCGGGCTTAAAGTCCAGGTCAAGCTCGACCGCTAAGGACGCGCCTAAATGTCTTATTCTTACCCCCCCGTCGCGCCGACTTTCTCGGGCGACAACGAGACCATTTCCCGCTTCCTGAACACCCCGACGCTCGTTTCACGCCGCGTTCAGGACATCACTAGCAACCGGTTCATCGCGGATGTGCTACTCACGGGCCGCACTGACGTTTCCGGTGGCGCCATTACTTACGACGTGGACGAGGACCTGTACACGGTTCGCCCGATCACCGCCGTTTCTCCCGGTGGCGAGTACGACATCACCACGCTGACGAACGGCACCCCGCAGGTTGCCAAGGTCACCAAGTGGGGCCAGGACACCATCGTGTACGACGAGGCCGTGAAGCGTCAGAACTTCGGCGCCGTCGATAAGGGTCTGGGCAAACTGTCCAACACTCTGGTCAAGAAGGTTGACTCGATCAGCCTTTCCCTGATCGCATCGACCGTTACCGCTACTCAGGCCGTCACTTCTGGTGCATGGTCTGTTTCCGGTACTGCCGCGATCCTGCGCGACATCATGCTCGCGAAGTCGAAGGTCACCGCCCTGAACAAGGGTTATGACCCGAATGTCCTGGTTGTGGATGACACGACCTGGGCTTACCTGGCTTCTGATGTTGCTGTGCAGACTGCACGCGGCCGTGAAGATGCCAGCAACCCGATCTACTCGGGAAACTTCCTGACCATCGCCGGCCTGACGGTCCTGCCTACCCCGAACATTCCGGGCGGTTCCGGCGCGTGGCTGGTTGACACCAGCGCTCTCGGTGGCATCGCTGACGAGGATCTGGGTGGCGGCTACGTCGGCACCATCGTTCAGACGAAGGTCATGCGTGAGGACGCCGTTGACGGCTGGCGCCTGCGTGCCCGCCGCGTGTGCGTGCCTTACGTGACCGAGCCCGGCGCTGCCATCAAGATCACCGGCGTTTAG

Protein sequences of DBSCAN-SWA_2

>NZ_CP041188|1265337:1272475|1265337_1265667_+|WP_168223491.1|DBSCAN-SWA
MHWRRKARADGREANPAWTESRKANYHKRRAQKLGTQVEDLRPIDIYERDIWLCGLCSTPVDPDSAWPDPMSPSLDHVKPLSLGGTHTYENVQLSHLVCNVSKGNRVAA
>NZ_CP041188|1265337:1272475|1266199_1267855_+|WP_141141958.1|terminase|DBSCAN-SWA
MTHEQIMDAVDKTPLVVAFQADKHPGAWFDVARARKALNAMGAFRHTKGRWAGVPMRLGQGLDPWQVVWVLAPVFGWVYHDEEIDTIVRVIRSVWIEIPRKNGKSTFASGISGVLLLADGEMGAEVYNAAGSTMQAARVFDDAKNMLMASPAARKRIEPLKEVIRVPKTGSILRVLSRVAETAHGLNVSGATIDEIHTLRLQRKLVEAIETGVGARDQPLIVFITTADEAEEGTIYDEKHTYTRNVANFVVTDPGHYGVIWAADDTDDPFSEETWRKANPGLGKSPTLAYMRRESNKAQSSPSYFPTFCQLSLNRRVRNQSRWVDLGKWDDLGGAERQKLRGRRAWGGIDLSAVSDFTAWSVWAESNRPGFELDLFTRLWVPGERIEDLEKQLQIPLQKWIDDGHVHATEGDVIDYGAIKSAVIGDCNHFDMQRVSYDRMFAGQLVQELDEELKGVEVVPVAQTFMGLSPASKEMERLWSNGAMRHEANPAMRWMASVVEVKNDGLDNIRPVKPDRRKSSARIDGFQAAVTGLDGVIRSKLTKPKRRVVVS
>NZ_CP041188|1265337:1272475|1267870_1269202_+|WP_168223492.1|portal|DBSCAN-SWA
MAVSSALVRLDAKLAAGIPGLDKLDKYFEGEQPLKYMAAAMQAEIGDRVSQLVLNWLRFGAEAYENRLDVEGFRYRGSNSSDDDLWATWQANGLDEQSQQAHLDSLVLGRSYVIVGSPDAAGDEPIVSVESPFQVFAERNPRTRRVSAAVKRWQEGEGEDAVQWATLYLPDSTETFAFAKEWKSAGSADNHELGVVPVVPLVNRPRILRPDGLSEFQDVIPVADAANKMATDMMVSGEYHAMPRRWASALKADDFVDPNGNPINVWSRDAGRLWATESAETKFGQFQESDLAVFHNSIKLLAQLASQMLALPPHYLSFVGDNPASADAIRSSETQLVKRVERKHTYLGGAWEDVQRLVLRFKTGKWDPAAQGLETQWRDPSTPTVAQKADAVVKLVQTGILPIEQARQDLGYTQEQRNRMVEMDDRAKSNPDIANLARAVNGE
>NZ_CP041188|1265337:1272475|1271563_1272475_+|WP_141139490.1|DBSCAN-SWA
MSYSYPPVAPTFSGDNETISRFLNTPTLVSRRVQDITSNRFIADVLLTGRTDVSGGAITYDVDEDLYTVRPITAVSPGGEYDITTLTNGTPQVAKVTKWGQDTIVYDEAVKRQNFGAVDKGLGKLSNTLVKKVDSISLSLIASTVTATQAVTSGAWSVSGTAAILRDIMLAKSKVTALNKGYDPNVLVVDDTTWAYLASDVAVQTARGREDASNPIYSGNFLTIAGLTVLPTPNIPGGSGAWLVDTSALGGIADEDLGGGYVGTIVQTKVMREDAVDGWRLRARRVCVPYVTEPGAAIKITGV
>NZ_CP041188|1265337:1272475|1271158_1271551_+|WP_141139489.1|DBSCAN-SWA
MAEYLPVKTPGQALPLAASATITAGQLVAVSGVSTVAAAGANATNWLGVAAFDAASGDVVTIFSGGVQELVTTGTVTAGDLVVAAAAGTVSTLAAVTTPTAADVTNTRAILGVALTTATTGLKVQVKLDR
>NZ_CP041188|1265337:1272475|1265676_1266159_+|WP_141139485.1|terminase|DBSCAN-SWA
MATVGRKPKPTLQVVREGNPGKRPVKDSVKFSPSDLNEPDWPSVFPGSSADELRCRETAGALWRKLAPTLSRSVGLVGEQQESLVDYCVTWARIEQGERALSLEGMIVMTERGQVKNAWTTILNAYRSHLRSLIGELGLSPSAATRLGGKATDDEDDPFD
>NZ_CP041188|1265337:1272475|1269205_1270474_+|WP_141139487.1|DBSCAN-SWA
MVPDAAVKHYEQMQRLQALVVLAGAQLWSEVSLTDLSGSWAAQVPLLVPVLSGVQVKAASAGASYGAATLAEQSLYEAPQHFVNPKGFSGIASDGRSLEGALYSAVPYVKNLIGGGMAPAQALKSGGSFLTTITRTQVADAGRGAAGVDTVTRNRVSYVRMLNPPSCSRCSILAGRVYRWNAGFRRHNRCDCIHVMTTARAAAETEGLIHDPYEYFKSLSPEDQDKNYTKAGAQAIRDGSDIFQVVNSRRGMKPGGLMTTEGTTKRGNFRATAGDSTRGRRLTPEAIYKLNGDNRAGALKDLEKYGYILPGGQNPLGSITGQREGFGALGHGGAHPAARKRVEDAITNGRDPAVRATMTESERRLFDAKARWELVQQGVNPYGAPSMTPRAKINTSPLTPQISAQVEKDYRRWVATGGQVFK
>NZ_CP041188|1265337:1272475|1270654_1271155_+|WP_141139488.1|DBSCAN-SWA
MADELNPPVDPVEPATPTSAEPADPPAEPIADATPDPAELERLRAALAKANKEAEKNRLRLKEVDDAKLSEIEKAQRDAAEASQELASLRRDSLRQKVALDAGLPAKWVARLHGDDEGSLRADALEILADLNKPRIPAPDASQGARTSALSADDQLYESIYGKRKA

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_168223491.1|1265337_1265667_+	HNH endonuclease	A0A1L6BZD8	Pasteurella_phage	7.2e-22	54.5
WP_141139485.1|1265676_1266159_+|terminase	P27 family phage terminase small subunit	A0A2P1JSY0	Streptomyces_phage	1.1e-39	54.3
WP_141141958.1|1266199_1267855_+|terminase	terminase large subunit	A0A2H5BLT3	Streptomyces_phage	1.1e-200	61.4
WP_168223492.1|1267870_1269202_+|portal	phage portal protein	A0A2H4JAT8	uncultured_Caudovirales_phage	3.7e-77	39.2
WP_141139487.1|1269205_1270474_+	hypothetical protein	A0A1C9EHV4	Gordonia_phage	8.8e-44	37.2
WP_141139488.1|1270654_1271155_+	hypothetical protein	NA	NA	NA	NA
WP_141139489.1|1271158_1271551_+	DUF2190 family protein	A0A142K8P7	Gordonia_phage	4.5e-15	56.6
WP_141139490.1|1271563_1272475_+	hypothetical protein	A0A142K8P8	Gordonia_phage	7.0e-75	50.8