CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041185	Janthinobacterium sp. SNU WT3 strain SNU WT1 chromosome, complete genome	4 crisprs	cas3,DEDDh,csa3,c2c9_V-U4,WYL,DinG	0	1	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041185_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041185_1

2753470-2753650

Orphan

Consensus_repeat	Method
GTGCCGATATTGGTGCCGACCAGGCCGCCACCGACG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP041185_1

>merge|NZ_CP041185|1|2753470-2753650|PILER-CR
GGTGGCGACCAGGCCGCCGCCGACGGAACCTGTGCTGACCGCGCCGTTCGCATAACTGCTGGCGATGGTGCCGGTATTGGTGCCGACCAGGCCGCCCATGGCGTTGTTGCCACCGACCGAGCCGCTGGCATAGCTGTCCTTGATGGTGCCGATATTATTGCCGACCAGGCCGCCACCGCCG

>NZ_CP041185|1|1|2753470-2753650|PILER-CR
GGTGGCGACCAGGCCGCCGCCGACGGAACCTGTGCT	GACCGCGCCGTTCGCATAACTGCTGGCGATGGTGCCGGTATT
GGTGCCGACCAGGCCGCCCATGGCGTTGTTGCCACC	GACCGAGCCGCTGGCATAGCTGTCCTTGATGGTGCCGATATTATTGCCG
ACCAGGCCGCCACCGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041185.1\|WP_141170340.1\|2743422_2746110_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273804
NZ_CP041185.1\|WP_141170345.1\|2759157_2760054_+\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|224651
NZ_CP041185.1\|WP_141170343.1\|2756850_2758593_-\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	unknown	unknown	gnl\|CDD\|225387
NZ_CP041185.1\|WP_141170339.1\|2740043_2743208_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NZ_CP041185.1\|WP_141170336.1\|2732314_2734585_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP041185.1\|WP_141170346.1\|2760135_2761458_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|236027
NZ_CP041185.1\|WP_141170350.1\|2769213_2771055_-\|type-VI-secretion-system-baseplate-subunit-TssF	unknown	unknown	gnl\|CDD\|274541
NZ_CP041185.1\|WP_141170337.1\|2735052_2737230_+\|cyanophycin-synthetase	unknown	unknown	gnl\|CDD\|237586
NZ_CP041185.1\|WP_141170332.1\|2726515_2727115_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP041185.1\|WP_141170344.1\|2758828_2759113_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041185.1\|WP_168208445.1\|2768224_2769253_-\|type-VI-secretion-system-baseplate-subunit-TssG	unknown	unknown	gnl\|CDD\|377755
NZ_CP041185.1\|WP_141170335.1\|2731841_2732312_-\|DUF1854-domain-containing-protein	unknown	unknown	gnl\|CDD\|378095
NZ_CP041185.1\|WP_141170338.1\|2737287_2739858_+\|cyanophycin-synthetase	unknown	unknown	gnl\|CDD\|237586
NZ_CP041185.1\|WP_141172762.1\|2761746_2762631_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041185.1\|WP_141170341.1\|2746185_2747007_-\|sulfotransferase	unknown	unknown	gnl\|CDD\|379204
NZ_CP041185.1\|WP_099379104.1\|2761454_2761718_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226589
NZ_CP041185.1\|WP_141170348.1\|2765432_2768177_-\|type-VI-secretion-system-tip-protein-VgrG	unknown	unknown	gnl\|CDD\|226032
NZ_CP041185.1\|WP_141170333.1\|2727238_2728753_+\|AMP-nucleosidase	unknown	unknown	gnl\|CDD\|236222
NZ_CP041185.1\|WP_141170347.1\|2763159_2765409_-\|DUF3274-domain-containing-protein	unknown	unknown	gnl\|CDD\|371665
NZ_CP041185.1\|WP_141170334.1\|2729184_2731707_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657

Protein	Function_ID	Function_description	E-value
NZ_CP041185.1\|WP_141170340.1\|2743422_2746110_+\|TonB-dependent-receptor	gnl\|CDD\|273804	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor. This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins].	3.13455e-172
NZ_CP041185.1\|WP_141170345.1\|2759157_2760054_+\|SIS-domain-containing-protein	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	3.80129e-45
NZ_CP041185.1\|WP_141170343.1\|2756850_2758593_-\|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	3.62578e-86
NZ_CP041185.1\|WP_141170339.1\|2740043_2743208_+\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	8.40149e-135
NZ_CP041185.1\|WP_141170336.1\|2732314_2734585_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP041185.1\|WP_141170346.1\|2760135_2761458_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|236027	PRK07483, PRK07483, aspartate aminotransferase family protein.	0
NZ_CP041185.1\|WP_141170350.1\|2769213_2771055_-\|type-VI-secretion-system-baseplate-subunit-TssF	gnl\|CDD\|274541	TIGR03359, VI_chp_6, type VI secretion protein, VC_A0110 family. This protein family is associated with type VI secretion in a number of pathogenic bacteria. Mutation is associated with impaired virulence, such as impaired infection of plants by Rhizobium leguminosarum.	0
NZ_CP041185.1\|WP_141170337.1\|2735052_2737230_+\|cyanophycin-synthetase	gnl\|CDD\|237586	PRK14016, PRK14016, cyanophycin synthetase; Provisional.	0
NZ_CP041185.1\|WP_141170332.1\|2726515_2727115_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.47177e-07
NZ_CP041185.1\|WP_168208445.1\|2768224_2769253_-\|type-VI-secretion-system-baseplate-subunit-TssG	gnl\|CDD\|377755	pfam06996, T6SS_TssG, Type VI secretion, TssG. This is a family of Gram-negative bacterial proteins that form part of the type VI pathogenicity secretion system (T6SS), including TssG. TssG is homologs to phage tail proteins and is required for proper assembly of the Hcp tube in bacteria.One other member in this family, SciB (Q93IT4) from Salmonella enterica, is thought to be involved in virulence.	1.59073e-78
NZ_CP041185.1\|WP_141170335.1\|2731841_2732312_-\|DUF1854-domain-containing-protein	gnl\|CDD\|378095	pfam08909, DUF1854, Domain of unknown function (DUF1854). This potential domain is functionally uncharacterized. It is found at the C-terminus of a number of ATP transporter proteins suggesting this domain may be involved in ligand binding.	6.39724e-65
NZ_CP041185.1\|WP_141170338.1\|2737287_2739858_+\|cyanophycin-synthetase	gnl\|CDD\|237586	PRK14016, PRK14016, cyanophycin synthetase; Provisional.	0
NZ_CP041185.1\|WP_141170341.1\|2746185_2747007_-\|sulfotransferase	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	1.47301e-15
NZ_CP041185.1\|WP_099379104.1\|2761454_2761718_-\|hypothetical-protein	gnl\|CDD\|226589	COG4104, COG4104, Uncharacterized conserved protein [Function unknown].	4.24328e-24
NZ_CP041185.1\|WP_141170348.1\|2765432_2768177_-\|type-VI-secretion-system-tip-protein-VgrG	gnl\|CDD\|226032	COG3501, VgrG, Uncharacterized protein conserved in bacteria [Function unknown].	1.40497e-106
NZ_CP041185.1\|WP_141170333.1\|2727238_2728753_+\|AMP-nucleosidase	gnl\|CDD\|236222	PRK08292, PRK08292, AMP nucleosidase; Provisional.	0
NZ_CP041185.1\|WP_141170347.1\|2763159_2765409_-\|DUF3274-domain-containing-protein	gnl\|CDD\|371665	pfam11678, DUF3274, Protein of unknown function (DUF3274). This bacterial family of proteins has no known function.	0.00066685
NZ_CP041185.1\|WP_141170334.1\|2729184_2731707_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	3.7907e-71

>NZ_CP041185.1|WP_141170341.1|2746185_2747007_-|sulfotransferase
MTPHFIGVSGLPRAGSTLLCQLLAQHPDLHSEGNSSPLCNALLGMRHTISDDPFFLSQLDTSFDASYGHLTTAMRGFLRGWYQDCGKQAVVDKNRGWLKAMEMLLQLAPEAKLIVCVRELGQVYGSVEAQHQRTILLDFIDHLADYDRLGRADMLFGKDRTIGAPLSDLQGIPDLPLAVQQRLYVLRFEDMMARPAECMAHLYAWLGLAPFQIDPGKLRVGLRESDSHYRMKYTHRQFSCIRAPQQHAIPPRIQQYIENACGWFYDMYYPAKT
>NZ_CP041185.1|WP_141170340.1|2743422_2746110_+|TonB-dependent-receptor
MKQWMATGTGTPKQNTRLTLKATVAALAGAGLLSGASVWAQQAPAVETAAAEVAEVAEAVPAAAQEAAADNAGIAVVAVTGVRRAAQSAQTIKKNNDQVVDSIVADEIGKFPDKNVAEILGRVTGVQVRREGGEAGTVVIRGLPGVVTLLNGREMFTSVGRSLYLADIPTAMLQRVDVYKSQGADMVEGGTAGVVDVRTNRPFDFKGFTASGNVRAEHRDKSGSTDPNVSGMVSNRWKTPYGEFGALLGLSYQRSKYYDETIWNAEPVKRPEAGNITGPDSVGMIPTVGDRKRYAANAAFQWRPNSQVEVYAEGMSTLIKHAFDSQFFVGSLPWGQNPDITLIPGTTQAATVGKIDGPWSPFTLGSTQARRDRSIGSQGAIGARWDITPQLRATTELARTVSNFEREFPILDFLAHPTSIIGSTNVNGGAQISYPGYNMLDPKNYTLLGFYDNHSHDEGSSTDWRADVTYDMDSTGFFREFSGGVRMAKRKAESIREKNGQGGLTSTMYADAIPGLACTSHQNTGNFGLQSWLTPCRDFMLNNTDTLRQLFTGSSERSPDDPMSHYMDVEKTNAIYGKARIGFDLAQVPVDGTLGVRVVQTKQDLQGNSSQNGIITPVRVKTSDTDVLPSLTLKAMLRQDLIARLTAGKAVQRPNFADFNPGVTLGQSLEMVRPTGSGGNPDLKPVEGKNLDAALEWYFAQTGSVTATVFRHNFKNYILSGSAKETYGGIEYDITRPRNTSKGHLQGMEMAYQQFYDKLPGWMSGLGLQANATYMTGELEELNGSAHPFTGMSKWSANIVGLYEQGPWSARLAYSWRDKYVDDYNYRGKGIHLTVAPTKTLDASVSYKLNPNTTVTLDANNLLDSTYRDYHDTPDYVRDVRRYDKVVGLSVRWSY
>NZ_CP041185.1|WP_141170339.1|2740043_2743208_+|EAL-domain-containing-protein
MVGRISRMIGKLTVGRKLALIYLLDLSAVIFISGILINEKYIAIDFSRKEMAGNAYIAAIRDALLPLTRSTAQVDAQAAAIEQAERQFGAGMRSAQLSGEFATLLRQAGGTPAAHDGMAPSPAFVAGRELLTRVGNQSNLILDPDLDSYYTMSLVILRFPELLEVINSTRDLALQLATAEGAQRQRLQTQFLILEGRMDATMGGIGSDYTEAFAASTPLLRRHLDGSRATLQQAVAQFRASTQALAGTPAHADGNAALLRHDAAAVAALQRAWRAAENELHRLIQLRVDGFFTRMWLHLGTAVLLLVMILGLVFFVARQIALPIRRLARVAQEVRETGDHSLRAVWDSEDETGRLVSAFNTMLQQLDFQRMAQQDLVARASAADAQRQLVDAIPIPLMVTSIPHHQVLHANQAAHAWQGSLELDPWVGGMSPQARSRFFQRLSDLGAVDEFEVCWSGGGTPTWALISARLIDYQGQRAVLSTFTPINKMKLMESRLELWAKVFEASAESLIVMDADMRIITVNQAFRRHSLYDMVELIGKRPAFLLAPDNSPEQLDSLRQTLARRGYWQGEISVQRKSMESYPAWLVMNAVRDLDGVTTHFIASSLDISERKASERQIEHMAHHDALTGLANRHVSKLRLAAAIAQARRSGEKVGVLFVDLDRFKHVNDALGHHVGDALLQSVSKRLLQLVREGDTVCRLGGDEFVVILNGIGDAEAIGALLDTRLIPAMRQPHQVEGSALYVSCSVGVAIYPDHGDDMDTLMRHADAAMYQAKSGGRDNARMFTPQMQEQQLQQLHLESDLRHAIERQELVLYYQPRVDAQSSRLNGVESLIRWQHPQHGLIAPDSFIPAAEESGLIVSIGAWVIREACRQQLAWREAGAGDIAVSINLSAIQLKSGTLVATLREVLREFPVTPGQIEFELTESILMDNVDDTIATLHAIKALGFALSIDDFGTGYSSLNYLCRFPLDKLKIDMSFVQDIHGSPQNLAVTKTIIGLGHTLGLTVTAEGVESAADADVLRHAGCDELQGYYFARPMPQAHFMAWLAHSDARCAA
>NZ_CP041185.1|WP_141170338.1|2737287_2739858_+|cyanophycin-synthetase
MEVSRVRALRGPNLWSHDTAVEAIVSCTTQELDIAQLPGFEARLRARFPQLSPLQPLGNYNAAPMAQVLELAALGLQAQAGCPVTFSRTTPTLETGIFQVVVEYSEEAVGRLALELAQQLCRAALDDAPFDLAGALHQLQELDEDVRLGPSTGAIVNAAVARNIPFRRLTEGSLVTFGWGSKQRKIQAAEMDGTSAIAEAIAQDKELTKKLLDSAGVPVPHGRVAIDADDAWAAACEIGLPVVVKPKDGNQGKGVTVNVTTREQLTAGFLAAQEFRDDILVERYLPGHDFRLLVIGNKMVAAARRDPPQVVGDGQHTVRELVDQVNLDPRRGSGHATSLTKIRFDDIALASLAKQGYVAESVPPVGQRVILRNNANLSTGGSATDVTVDVHPEVAARAVAAAHMVGLDICGVDVVSESILKPLEEQNAGIVEVNAAPGLRMHLAPSFGKPRPVGEAIIAAMFAEGDDGRIPVVAVTGTNGKTTTVRLIAHLLTTSGLRTGMTNTDGVYIEGRQIDSGDCSGPRSARNVLLHPDVDAAVFETARGGMLREGLAFDRCQVAVVTNIGAGDHLGLNYITTVEDLAVLKRVIVQNVADSGVAVLNATDPAVARMAKNCSGTVTFFAADKTHPVMATHRAQGNRVVYVEDGNLVAAQGKERHEIALSQVPITRNGAIGFQVDNVMASLAAAWAVGLDWKTIALGLKTFANEADNAPGRFNVFDYKGATLIADYGHNPDAILALVQAVESMPAKRRSVVISGAGDRRDEDIRQQTEILGAAFDDVLLYQDQCQRGRADGEVVALLRQGLNGAKRTSHIDEINGEFVAIDKALARLNEGDLCLILIDQVEEALAHIARRVAEA
>NZ_CP041185.1|WP_141170337.1|2735052_2737230_+|cyanophycin-synthetase
MIKKKNIEFARVTHLRGPNIWTYRPVIEAWVDIGELEDYPSNTLPGLYERLVAWLPGMIEHRCGVGERGGFFERLREGTWSAHILEHVVLELQNLAGMRTGFGQTRSTSQRGVYKMAFRTREEHVGRAALAAARELLMAAINDEAYDLEAALAPLRDMVDARCLGPSTASIVDAATERGIPSLRLNDGNLVQLGHGAAQRRIWTAETDRTSAIAEGIASDKDLTKFLLKSCGVRVPEGSLVRSAEAAWEEAQDIGVPVVVKPYDGNHGRGVSLNLMTESDVKAAYELAARKGDSSAVLVESFITGDEHRLLVVGNKLIAAAKGESLWVDGDGVSTVLELVNTQINIDPRRGEGEDFPLGTVKPHESGEIVLELQRQGMTALSVPQAGQKVLIQPNGNVAIDVTDDVHPSVMHAALLAARVVGLDIAGIDLVTTDITRPLEEQRGAIIEVNASPGLLAHIKPGVGQSRPVGAAIVDHLFAAEETGRIPLIGVTGTRGASLIVRMLCKLLNLSGLHTGAVCSEGMYLDQRRVVSNDCVNWDAGQRLLLNRTVQTALFESNPRMILAEGLAYDKCQVGIVTDMGSVESVKDFDVLDDAGLYKAVRSQVDVVVPTGVAVLNAANAHVLELAELCDGTVTLYAQDGSLPAIAAQLAAGQRAVFVRGNHIVLAEGGIETVLLCLDLLKPATAGNVDSVLAVAAAAWAMNLPVDLICAGLRTFDAAPGCIGN
>NZ_CP041185.1|WP_141170336.1|2732314_2734585_-|ATP-binding-cassette-domain-containing-protein
MTTELNVPATTIPLTSLPEHWLAEVESKLSPGENVLSSVEVDLDARLRFTKGIIVVTEKRLLARSPGDSDWKSWSFRPGLRLTHHDHAGVGHLELFDDHGRLASWRFTLGQNLHAIRVLEQFVERLDSHLTGQPVLQAEQEVCPSCKAPLEPEQEECPICAKVLYTPPSTWTLFRLWRFAHPYRGQLALGFMLMLLSTAAHMIPPYLTAPLMDNVLIPYQNGKHIDPWLVVYYMSGLLGSALLAWLLGWGKTYVLALVSERMGADLRSATYEHLMKLSLEFFGGKRTGDLMSRIGSGSDRICVFLSLHLLDFASDVLMIIMTGVILWSMNPWLAIMTLAPLPFIAWMIHLVRDRLRTGFEKIDRVWSEVTNVLADTIPGIRVVKAFAQEKREAARFRDANAHNLAVNDKLNKVWSLFSPTVSFLTEMGLLVIWCFGIWQLSRGEITVGVLTAFIAYSTRFYGRLDSMSRIVSVTQKSASAAKRIFDILDHVSSVPEPAHPVKLEKIEGRIDLREVGFRYGNRAVNRGITLNIKAGEMIGLVGHSGSGKSTLVNLICRFYDVSEGAILLDGVDIRSFAVSDYRRNIGLVLQEPFLFFGTIAENIAYGKPHASRQEIIAAARAAHAHEFILRLPQGYDSMVGERGQGLSGGERQRISIARALLIDPRILIMDEATSSVDSETEKEIQKALDNLVQGRTTIAIAHRLSTLHRADRLVVLDRGQVVEVGSHDELMAKEGAYFRLYEAQARNNELALDDKE
>NZ_CP041185.1|WP_141170335.1|2731841_2732312_-|DUF1854-domain-containing-protein
MASTTFTLSRDTFGKLVMTAEDGQVFEGVAPVRAFPIQSPDEGISLVLGNGKEVAWIERLDTLPEPARSLLQEELEGREFMPEIARVKSVSSFATPCTWYVDTDRGETQFVLKGEEDIRRIGATSLLIADNHGIHFLIRDMFNIDKTTRKILDRFL
>NZ_CP041185.1|WP_141170334.1|2729184_2731707_+|TonB-dependent-receptor
MIEKTLNKSLRMMFAGTLAMSAGFMHQAAQAQEAKADEKLQRVVVTGSAIKRVDAETAAPVEIYSKKDIERTGATSVAELVRNLASIDINDQGELSASSPSGSGTTNIKMRGLSERNVLILLNGRRLPTNALADGSGAGAAVDVNAIPLSALERIEILKDGGSAIYGADAVAGVMNFITKKNYQGLEAKTSYGQSSRSDAKEKTANLVYGYGDYDTQGFNVLATVDVFKRDPIYRKDRDLTSSADFRRFGGPDGRSGYHPSGNIAGGGTLVPCPPDDLSDGTCRFDVNKTLLTSTNGADRVSGMLIGSLKISDSIRAFAEFTYSESKDDFSSQPAPGNFKVGNQTVAGRFMQMGPRQTNRKGTMTQFSTGLEGTTRGIDWDVAIGKGVSKATNRDSNYAHYDLFNEAIANGKINPTRTDNPQAEVDKIRLTPSRAGKSELTFFNAKASAPIMDLAGGAMAYAVGVSYNKETLSDQPDQNQIDGLVFGSIQQAAVKADRNSKGIFGELSIPFMKNVEAQVALRYDDISNVGSKTSPKLALRYQPLNNLMFRGSYAGSFLAPSLKQMYGGVDAGAYTTSDTDICKAFPSIAGNCKNFAYYQVSGSNKDLQPETGKTYNLGVVFSPVNSLTASIDFFKINKKNEIGTLTELKAIELGNVEIKNGDARILLNNQNLATTEVRGFDTDLRYTSPQTMFGKFTLRNASTIYTRMDTQDTVTDPEQSTMKTFMNPKYRNTFTASLEKDNMSGSLVIRTTGDMIDSDLRRDEIKPGTRTIPSHTEVDLTGQYVAMQNLTFTAGIKNLFDKMPPFSIMGAGNQYGTLGFAQLYNVRGRYFYVGAGYKFM
>NZ_CP041185.1|WP_141170333.1|2727238_2728753_+|AMP-nucleosidase
MLTPPFIASSRFDDPRLALEQVQAIYRSSIEHLRDALQRFVAGEDMHERVRACYPFVRIQTDTVARADSPLAYGFVAGPGVFETTLTRPDLFGDYYLDQFTLLLKNHNSGQNVHLEVGVSAQPIPVHFSFAEHDHIEGNMDAGRRLAMRDLFDLPDLSAMDDGIANGTHEPAHGEAQPLALFTGPRVDYSLQRLRHYSGTSPQHFQNFVLFTNYQFYIDEFIRLGHAMMDRAPDPQAPSDDDGYIAFVEPGNVVTRRVGQTVESEDALGAAPPRLPQMPAYHLLRADGSGITMVNIGVGPANAKTITDHIAVLRPHAWLMLGHCAGLRTTQSLGDYVLAHAYVREDHVLDEDLPLWVPIPPLAEIQQALQTAVAEITQLTGHDLKHIMRTGTVASTDNRNWELLPQRTPERRFSQSRAIALDMESATIAANGFRFRVPYGTLLCVSDKPLHGEIKLPGMANHFYRERVDQHLRIGIRAVELLRRQGVDRLHSRKLRSFAEVAFQ
>NZ_CP041185.1|WP_141170332.1|2726515_2727115_-|TetR-family-transcriptional-regulator
MVRLAKFNENNFIDSAIAVAAQCGVGAVSMAAIAVKAGAPIGSVYHRFDSRNAILARAWLRVKSDFREEVASRWLGGDTWAGVHGLLDWCRRKPVYARFLLQCADSPDFSSGLSEQLLAAVEEEQAALDACFVRCAEAMPATTELDLDHMLLKFVLIDAPVAVVKPYLTQERPIPASVDAMLRASHDAVRGWALNTTSH
>NZ_CP041185.1|WP_141170343.1|2756850_2758593_-|ShlB/FhaC/HecB-family-hemolysin-secretion/activation-protein
MLKLLNIYKYICLYGNFIAPPIVIERILLRTKLLPLTLLLLIQNAYAVDPPSAGSQLQQIPVAPQLPKAPPAIRVQQGNVPATTVGDTTRITVQRLHVTAPPVFPESELIASTGFVPGSELTLGELRAMASNIASYYQKRGYFLAQAYLPAQDIEDGVVQINVLPGQYGQVQLRNQSNLSDGLAGTILAGLDGQVISTPPLERRLLLLSDLPGVQVSSTLAPGASLGASDLIVEVQPGSRFNGSIDVDNQGNRYTGRNRIGATLNINELAGIGDVASVRAFTSADGLNYGRLAYQGQAGLLRLGGAYTYMDYKLGKEFAVLEAKGTAKIASAYGSYPLIRSRSNNLYAQVSYDDKTFQDRTESTGSVNDKTARVWMLNLNGDAKDGWGGGGFSNYSLTYTTGKIDIETPQARLIDRLTVDTHGSFHKLAFNAARLQSLGGETSLFGSLSGQAASKNLDVSEKMGIGGMGGVRAYPGGEAYGDQGYVLNLELRQNLTAFTALPGQLQVLAFADTGSVKLNRDAWSAGENRRTLSGAGMGVTWTGANALVLKAYYAHKLGNAKATSAPDSAGRFWLQAVKYF
>NZ_CP041185.1|WP_141170344.1|2758828_2759113_+|hypothetical-protein
MRDARYVDTQLFQPDIPMRLDMRTAALVEHALALQEMAGTGAAALFLHCHDVPLPTALRVLTTGPRRTPAGPHLFARLRPRTAALAQGLPLPAR
>NZ_CP041185.1|WP_141170345.1|2759157_2760054_+|SIS-domain-containing-protein
MQAATPHDSYVALMDLIKARHAELSPQFQAGARYLADHPDDVAVSSMRSIAARAQVQSAALVRLAQQLGFAGWPELKAIFVERLRAGPSGYAAKAGALAGKEGKERALVTEVFTVQQRNLAATESANHAALNAAASLLQAAPRVHVAGFRAAHPIAYTLHYLYRLLRPSVQLLSGQGGTLEMDLRALQAGEAVVVVSFAPYSSEALLVAQAARQAGCLVVAISDSAMSPLAMQADASIVIAVDSPSFFPSIVAGVAAVESLVELLVARAGPDAVHAIGAAEKQLRALGAYAKTSNDVN
>NZ_CP041185.1|WP_141170346.1|2760135_2761458_+|aspartate-aminotransferase-family-protein
MSHVFHRSLTATYPVAMGGDGPYLIDADGKRYLDACGGAAVSCLGHSDAAVIAAVQQQIASMAYAHSSFFTNEPMEQLADFLVARAPAGIDSVYFVSGGSEAVESALKLARQYFVERGQPQRRHVIARRQSYHGNTLGALATGGNAWRRQQFEPLLIGVTHVSPCYAWRDQQAHETDADYVARLGQELEDHIAALGADKVMAFIAEPVVGATAGALPAVAGYFARMRAICQRHGILLILDEVMCGMGRTGSLFACEQEAVTADLICIAKGLGAGYQPIGAVMVSQDIRETIRAGTGFFQHGHTYIGHATACAAALAVQRQIEERDLLANVRAMGGLLKERLQARFGEHPHVGDIRGRGLFLGLELVQDRASKQPFDPARRLHARIKAHAMQGGLMCYPMGGTIDGLHGDHILLAPPYIIAASHVDELVDKLGTAIDASLA
>NZ_CP041185.1|WP_099379104.1|2761454_2761718_-|hypothetical-protein
MRGVIRLNDPTSHGGKVVGAAPNSTVLGVAVARKGDPCVCPIKGHVRCVIAEGDPQVLIDGVPVAFDGHKTSCGASLMSTVGNSGRG
>NZ_CP041185.1|WP_141172762.1|2761746_2762631_-|hypothetical-protein
MAGIHVEYAIPEGKLDLADATDFVREYIGDTFDIGNPNFPTLWTRATPPDVRITTGGPNAGFTSLAAALDYLQSHPKETVWAMNWDAPSRPLDRQINENLVLLVLAGPDYKTERAPLAWLGYPSSKAVADFDVKKGEPPRLVQAWMAAIEEAAAKANQAETGIGYLIHDAGNTHQDSSARLGALAQTLTVQLPEFDFLKQSFNLTAVLGETGAGTALTNVALGIAYAHHFGKPVLVAGTSDLSAPVALVVAPPAVVRPIQPGKPWFRARSGNHAYLPWWGLRHDAREYYQGFSQ
>NZ_CP041185.1|WP_141170347.1|2763159_2765409_-|DUF3274-domain-containing-protein
MQFDPHPPLCDDPTIDILGQFSCNANFQSSDRDTLQQLPLPGIVIFVHGVNSDGEWYAAAEEGLCKGLNERLKRNCEHIMHHGVEGGELKAVNYGAEVTAEGFLNPEMSADTLIRDAGTFSPVIRFRWGYKACGEELQQYGKGIYLNEEDYWGGGPFANGCSALADLWKDGLSEGLFLWNTIQHMNPFPERQVYSCPPRAYFVLAAYRLARLVEAIRQQQADVPVTIVCHSQGTMVAMAAAFLGAKLPKVKDNFPCVADNYVICNSPYSLAKSNSAENWVAGNLRAADGSTGRVTVQARIATLKNFFAIIGQRASLGEAQTDEEIDRCMANAQHGFSAAKDREQYGIAGAARGGKKSSYGRVTIYCNPHDVVVSSVAIEGIGWRGLSGSLAKDSKDGGELAATEAAGVCVQRVFAQGFEVGKQGSYHYWSDHWRKPAPGGKDFWFPAQKYASYSIKQGVEASEGSFSTILTVGFAPLFIVATGLAQSPCNASPHKDWKIELNAPDLLPPFKPQSLRFGQTSEEFDEGYEPPGESRQAGKQRASGDDYLANHEIPPGGLQGQAAKSEAKRMDSARGTADDEARLRFEQRAVIRAQAIREGKSPAGQKVQQEMPNATPDAEYQAWRSTRIAEMMSSQAGAYATDHSTILTNPMHAERALAYDVAIGVCRIKPDQLRKLRVAADWRLLKWVGDDNSAIEFLEYFNKGELHRKTISAWVKQSGCEAGMPTLIIDQRENPPLDARPTSGEMAHG
>NZ_CP041185.1|WP_141170348.1|2765432_2768177_-|type-VI-secretion-system-tip-protein-VgrG
MEDFAQWLAVDKALTTDKRALRLRLAYPEGINEDVLLPQRISGSEAICGGIEYRILCVATEAQLPLKQFIAVPAELQIVTDRGQLRRVCGIVAEASAGQSDGGLATYQLVLRDGLALMEKRVNTRVFRNKHELQIVQLLFEEWRQGNSVLAASLDLAIDAALAARSLPVREFTMQHNESDAAFIRRLLRRRGIAWCFQAGAPASAHAAHVPVHTLLLFDDASRLAQNAAGTVRYHRDDATEERDTVTAWNAVRRLQPGKSERYSWDDGHPHSPQFMRTQAGGKADQGGNGNRLAASLDDYIVEMPLAGAGNDDHRLLGQLAMARHDLETKCFQGESCVRDFCVGQWFSLQGHAEIDTHPAAERQFVLTAVSVLASNNLPKGLDARIERLFAHSGWQADAGLAQVAAAEPASILRYRNRFTCVRRGVDIVPAFDPRSDLPVVRLQSALVVGPAGEEVHCDALGRVNVRFVATRAQDHAHANGSGASDTERDSAWVRVASSWTGNGPGSGNQCGTVSLPRIGAEVLIDFLGGDPDRPIIVGQLYNAVGVPPGLSSRGALPGNRYLSGMRSREVRGGRGNQLCFDDTPSQISAQLASDQAATQLNLGYLTEPRSDGAGRQRGDGFELRSDASGSVRTARSLLISAWKQLGASGKQLDGSEHAAVMQECLELFSSLGDFAAQHQALALDAAGSKALGAAIAADQAAVSITAPEGVALSTPQTISGNAGANIDLVAQQHLQLSAAQRCNVNAGKGISLFAHQDGIVQVAHFGKFLLQSQHDLLQADAAKEIRLTAGTRLVGVAQDEITFMTAGGAYLKLSGGEVELGGPGALTVKTDGHHWNGPASMKGERPTFGEGELGRVPRLLRPTDGLPVDGVEVHIEREGDSPLTGVSGADGRGPKVETDHLQRLKGFFFRRRS
>NZ_CP041185.1|WP_168208445.1|2768224_2769253_-|type-VI-secretion-system-baseplate-subunit-TssG
MLPATQWKPDTGVVARLLADPSGTGFFQAVRLLSAWLMQQGISQEQVFEDYLRLHGSASLSFAPGEIEQLWLEPQADGETQVHVQAAMLGFLGVHGSLPLHYTETLARHERQTGDGGPRAWLDTLSQRALALFYQAWARYRIECQMDADGGDFLPMQLALAGALPAEVARQEHGLPAHVLAHYAALLRHRPVAADVMQALLAGYFGVPVRIQRFVGAWFRRAPQERTLLASANVRLGQGTMLGERCRRADLRVRLVLGPLARRVYEDFLPGRPGALALRQMLGLFGLPGMSFEIRLVLRREDVRTCVLGMGACLAEDAFLADKLPARERDDMHYDIRFDGSA
>NZ_CP041185.1|WP_141170350.1|2769213_2771055_-|type-VI-secretion-system-baseplate-subunit-TssF
MDELLQYYERELGTLHAHNQAFARRYPAIAGALGIVGSDLGTTDDPHMARMLQAFAMFNARTAKRLADGFGTFSETLLEVNFPHYLRPFPACAIARIDNDLAAVSELAVIPRGTLMHAAEHQSVACKFTTAYDVAVAPLRLSEVRFQSIVAAPPAVRLPPDLGAAISITLEATGATSTLDGLALPTLRLFLDGEPSFCATLRDSLFLRARCTCVEVDGVWHALDAVPLHPVGFAGEDALMPAMAASHPAYRLLGEWFAFPDKFNFVDLDLAALRPLLPPACRRCTVHLLLADVQADADIARILRPLSARHLVTGCTPVVNLFRQAANPIRLTHASAEHVLLPSVRQAHCYDIYSVDSVQVLSETQSGGALDAFHPFYSMRHGEAGGRQGRYWVTRRDEDMALSNPGYDMRIAFVDGAMQPLHDATQTVSIMLTCSNRDLPGRLVLGNAAGDLHHDGVASALPVRLLRKPGAPCRFPAGAASHWRLIAQLSLNHQSLNEQGLPLFKQILELYNLPGSASAARQIAGLTGLRQRAASTWLQDEAGGSLVFGIDVLLSVDEEAFVGSGLHAFAQVIERFLGLYVHLASFTRLIVLSQKTGKELLCCLPRNGNQTLV

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Crispr_ID: NZ_CP041185_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041185_2

3834211-3834289

Orphan

Consensus_repeat	Method
ATTGTCGGATTACGGCCTGCGGCC	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of NZ_CP041185_2

>merge|NZ_CP041185|2|3834211-3834289|CRISPRCasFinder
ATTGTCGGATTACGGCCTGCGGCCCAGACGCCGTCGGTATTGTTTATTCTCGGGTGATGTCGGATTACGGCCTGCGGCC

>NZ_CP041185|2|1|3834211-3834289|CRISPRCasFinder
ATTGTCGGATTACGGCCTGCGGCC	CAGACGCCGTCGGTATTGTTTATTCTCGGGT
GATGTCGGATTACGGCCTGCGGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041185.1\|WP_141171000.1\|3831479_3833582_+\|ATP-dependent-DNA-helicase-RecG	unknown	unknown	gnl\|CDD\|236794
NZ_CP041185.1\|WP_071075171.1\|3829103_3830243_-\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NZ_CP041185.1\|WP_141170999.1\|3830245_3831301_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666
NZ_CP041185.1\|WP_099761844.1\|3842570_3843527_-\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270406
NZ_CP041185.1\|WP_141170998.1\|3826613_3828479_-\|protein-translocase-subunit-SecD	unknown	unknown	gnl\|CDD\|235615
NZ_CP041185.1\|WP_096238712.1\|3841723_3842473_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP041185.1\|WP_141171005.1\|3837582_3838647_-\|dihydroorotase	unknown	unknown	gnl\|CDD\|235474
NZ_CP041185.1\|WP_168208474.1\|3823979_3824681_-\|YafY-family-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_CP041185.1\|WP_141171004.1\|3836759_3837575_-\|DUF3025-domain-containing-protein	unknown	unknown	gnl\|CDD\|378604
NZ_CP041185.1\|WP_141170996.1\|3824677_3825427_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041185.1\|WP_099761858.1\|3828574_3828907_-\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|235518
NZ_CP041185.1\|WP_141171008.1\|3843723_3845577_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|227590
NZ_CP041185.1\|WP_141170995.1\|3823278_3823905_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
NZ_CP041185.1\|WP_099376217.1\|3840284_3841010_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP041185.1\|WP_141171002.1\|3834528_3835743_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340913
NZ_CP041185.1\|WP_141171003.1\|3835754_3836756_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP041185.1\|WP_141171006.1\|3838798_3840256_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238624
NZ_CP041185.1\|WP_141171007.1\|3841029_3841722_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|185062
NZ_CP041185.1\|WP_141171001.1\|3833707_3834199_-\|transposase	unknown	unknown	gnl\|CDD\|224854
NZ_CP041185.1\|WP_141170997.1\|3825500_3826523_-\|protein-translocase-subunit-SecF	unknown	unknown	gnl\|CDD\|237275

Protein	Function_ID	Function_description	E-value
NZ_CP041185.1\|WP_141171000.1\|3831479_3833582_+\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_CP041185.1\|WP_071075171.1\|3829103_3830243_-\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0
NZ_CP041185.1\|WP_141170999.1\|3830245_3831301_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0
NZ_CP041185.1\|WP_099761844.1\|3842570_3843527_-\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270406	cd13688, PBP2_GltI_DEBP, Substrate-binding domain of ABC aspartate-glutamate transporter; the type 2 periplasmic binding protein fold. This subfamily represents the periplasmic-binding protein component of ABC transporter specific for carboxylic amino acids, including GtlI from Escherichia coli. The aspartate-glutamate binding domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	7.01314e-106
NZ_CP041185.1\|WP_141170998.1\|3826613_3828479_-\|protein-translocase-subunit-SecD	gnl\|CDD\|235615	PRK05812, secD, preprotein translocase subunit SecD; Reviewed.	0
NZ_CP041185.1\|WP_096238712.1\|3841723_3842473_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	6.38103e-64
NZ_CP041185.1\|WP_141171005.1\|3837582_3838647_-\|dihydroorotase	gnl\|CDD\|235474	PRK05451, PRK05451, dihydroorotase; Provisional.	0
NZ_CP041185.1\|WP_168208474.1\|3823979_3824681_-\|YafY-family-transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	2.35711e-58
NZ_CP041185.1\|WP_141171004.1\|3836759_3837575_-\|DUF3025-domain-containing-protein	gnl\|CDD\|378604	pfam11227, DUF3025, Protein of unknown function (DUF3025). Some members in this bacterial family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently this family of proteins has no known function.	1.66862e-96
NZ_CP041185.1\|WP_099761858.1\|3828574_3828907_-\|preprotein-translocase-subunit-YajC	gnl\|CDD\|235518	PRK05585, yajC, preprotein translocase subunit YajC; Validated.	3.68602e-49
NZ_CP041185.1\|WP_141171008.1\|3843723_3845577_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|227590	COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP041185.1\|WP_141170995.1\|3823278_3823905_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	1.07125e-40
NZ_CP041185.1\|WP_099376217.1\|3840284_3841010_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	3.6894e-149
NZ_CP041185.1\|WP_141171002.1\|3834528_3835743_-\|MFS-transporter	gnl\|CDD\|340913	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters. This group is composed of uncharacterized bacterial MFS-type transporters including Bacillus subtilis YcxA and YbfB. YcxA has been shown to facilitate the export of surfactin in B. subtilis. The YcxA-like group belongs to the Monocarboxylate transporter -like (MCT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.93454e-82
NZ_CP041185.1\|WP_141171003.1\|3835754_3836756_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	2.67228e-62
NZ_CP041185.1\|WP_141171006.1\|3838798_3840256_-\|amidohydrolase-family-protein	gnl\|CDD\|238624	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.	6.19308e-38
NZ_CP041185.1\|WP_141171007.1\|3841029_3841722_-\|ABC-transporter-permease-subunit	gnl\|CDD\|185062	PRK15107, PRK15107, glutamate/aspartate ABC transporter permease GltK.	9.8087e-69
NZ_CP041185.1\|WP_141171001.1\|3833707_3834199_-\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.17749e-33
NZ_CP041185.1\|WP_141170997.1\|3825500_3826523_-\|protein-translocase-subunit-SecF	gnl\|CDD\|237275	PRK13022, secF, protein translocase subunit SecF.	1.28518e-133

>NZ_CP041185.1|WP_141171001.1|3833707_3834199_-|transposase
MRYRRAFQQGGSFFFTVVTARRRPVFATATAVDVLRDAFRAVRHKRPFAIDAIVILPDHLHCIWTLPEGDADFMTRWRLIKTWFSKHRNLKNVWQQRYWEHVLRDERDFANHVDYIHYNPVKHGLVGKVIDWPYSSFHRYVKHGLCAEDWGGDGVAIEGVGRE
>NZ_CP041185.1|WP_141171000.1|3831479_3833582_+|ATP-dependent-DNA-helicase-RecG
MSEPKPDLPPTAKPAAKPKTAKKVVSTESRLAKLGLRTDMDLVLHLPMRYEDETRVYTIRDACLRGGESWQVEGVVTKCEVNFKPRKQLLVTIADETGNLLLRFMNFYGSQVKQLAEGTRVRARAELKHGFFGAEMVHPTYKVVNEGAPLPTALTPVYPSGEGLSQHVLRREIADAMRRIDWHDTLPDELLHQMQLSPFRAAVHLLHYPPQDIDESALMDRSHPAWVRMKFDELLAQQLSLKRAQRARRSKGAASLPIVGKLSASFAAALPFKLTGAQARVLGEIRADLHQPYPMQRLLQGDVGSGKTVVAALSATQAIDSGYQAALMAPTEILAEQHFRKIAAWMEPLGVKVAWLTGSLKKKEKTAALALIESGEAQLVIGTHALIQDNVLFAKLGLVIVDEQHRFGVGQRLTLRNKGDSAAVPHQLMMSATPIPRTLAMTYYADLEVSVIDELPPGRSPIVTRAIDQNRRDEVIARVYAAALEGRQVYWVCPLIEESEALQLQTATDTYMMLAEALPALQVGLVHGRLKPAEKQAVMDAFIAGHIHVLVATTVIEVGVDVPNASLMVIEHAERFGLSQLHQLRGRVGRGTAASVCLLLYQGPLGGVARQRLMTMRETTDGFEIARRDLEIRGPGEFLGARQSGQAMLRFADLETDQWLVDQARDVAHDLLHATTAAAAATVEAHLARWLGGKEEFLKV
>NZ_CP041185.1|WP_141170999.1|3830245_3831301_-|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MYSLSDFDFNLPQENIAQTPLAERSASRLLHLDGDTLVDRSFADIVGQLAAGDLLVMNDTRVLKARFFGVKESGGKIEALVERVLDDRTVLAQVRASKSPPPGCRIRLADAFDVTVGQRAGEFFTLHFEADVFELIEAHGRLPLPPYIEHDADEFDETRYQTVFNKVPGAVAAPTAGLHFDQALLDQLKAKGVNFAYVTLHVGAGTFQPVRTEVLAEHKMHTEWYTMPQDTVDAVRAAQLAGRDVVAVGTTSLRALESASQSGQLVAGSADTALFITPGYAFKTVTRLITNFHLPKSTLLMLVSAFAGYEPIRHAYAHAIAQNYRFFSYGDAMLLTTQSRAALNLDTPVKD
>NZ_CP041185.1|WP_071075171.1|3829103_3830243_-|tRNA-guanosine(34)-transglycosylase-Tgt
MLEFTLLKTDTSGLTKARRGTLKLNHGVVQTPIFMPVGTYGTVKAMSPLELNEIDAQIILGNTFHLWLRPGNTVMEKFGGLHGFMGWNKPILTDSGGFQVFSLGAMRKITEEGVHFNSPINGDKLFLSPEVSMQVQRVLNSDIVMQFDECTPYEIEGRPATIEEAAKSMRMSLRWAQRSKDEFHRGENPNALFGIVQGGMFEMLRDESLAKLEEIDFPGIAIGGLSVGEPKEDMMRMLAHVGPRLPANKPHYLMGVGTPEDLVAGVSNGIDMFDCVMPTRNARNGWLFTRFGDIKIKNAKYKEDQAPLDETCSCYACRNFSRAYLHHLHRSKEILGARLNTIHNLHYYLDLMRQMREALDEDRFHAFTLQFHAERARGT
>NZ_CP041185.1|WP_099761858.1|3828574_3828907_-|preprotein-translocase-subunit-YajC
MFFISNAYAQAPTDALGFGGNLTSFLPLVLMFVVMYFLMIRPQQKRAKEQRAMMDALAKGDEVVTAGGMLGRVVKVVDAYVTIEVATGTEITVQKSSITTLLPKGTLKAL
>NZ_CP041185.1|WP_141170998.1|3826613_3828479_-|protein-translocase-subunit-SecD
MNRYPAWKYIIIVVALLLGALYTAPNYFGESPALQVTSGKSTVKVTGELMTQVAEILTKENVKSEGVTMDGAGNLASVRVRFADPDTQFKAKLVLEKDLNTDASDPAYIVTVNLQANTPLWMQKLHALPMFLGLDLRGGVHFLMQVDAKAVLNKKVQGVQSAARSVLRDKNIRHAGIERVGDSVQISFRDADTRLKAKNVLSDQMTELAFADAGEGSDLKLNITLKPAALKATIDEGVKQNISTLSKRVNELGVAEPLIQQQGPDRIVVQLPGVQDVARAKAIIGRTATLEVRLVDEGIVPGTELSSAIPFNSELFTVGKGVPVVLSKDVILTGDYISSATASFDQNQQAAVSIDLNGDGGRKMREATRERVGKRMAIVLFEKGKPEVLSVATIQQELGSRFQITGMGGAENANELALLLRSGALSAPMTVIEERTIGPQLGAENIAKGFHSTLYGFIAIAIFMIAYYMLFGAFSVLALATNLLLLVGLLSMIQVTLTLPGIAAIALALGMAIDANVLINERIREELRAGSTPQAAIAAGFDRAWATILDSNVTTLIVGLALLAFGSGPVRGFAVVHCLGILTSMFSSVFVSRGVVNLWYGRKKKLTTLSIGTVWVPGTSK
>NZ_CP041185.1|WP_141170997.1|3825500_3826523_-|protein-translocase-subunit-SecF
MEFFRIKKDIPFMRHALIFNVISAVTFIAAVFFLFHKGLHLSVEFKGGTVMEVKYPKAANLEGIRGTLIGLGYEEPGVTSFDTARDVMIRLPVEKGVTAANTSQRVFETLCKVEQGTTKGIDTVTEKGEHVIKTACVDAAGNEALVLQKVEFVGPQVGEELTQNGLNALVMVILGVMAYLAVRFEWKYAVSAIIANLHDVVIILGFFAFFQWEFSLTVLAAILAVLGYSVNESVVIFDRIRENFRKQRKATVHEVIDSAITSTISRTIITHGSTQMMVLSMLVFGGQTLHHFALALTIGICFGIYSSVFVAASIAMWLGVKREDLIKPVKEKDETDGAVV
>NZ_CP041185.1|WP_141170996.1|3824677_3825427_-|hypothetical-protein
MKRLIVMGLMAGLGTLASAAELSRVAGDTIALRGAIAEGDVDQLRQLATPGTTVLRINSDGGDPQAAMLLGRYLRQRQWSLAIDTVCAGSCALYVFPAAQHTSIPDAAVLALQESAFLRAQEGPQHMRRSLIEAGVPADELERETAALAVQLAQMAALEAAFAAELGIAPAFYRDFRQVAAQADGVRQRFPDQEAAVHWWPGAARLQRCYGIAGVQEGTRAARLAPDGYLYVPALSALVMGDQALQACP
>NZ_CP041185.1|WP_168208474.1|3823979_3824681_-|YafY-family-transcriptional-regulator
MSRSGRLFLLMDAMRAKRVPVTAAQLAQQLGVSERTIYRDIQTLAELGAPLQGEAGIGYVLRRGAFLPPLMFGPDELEALVLGARWVRRQGDAGLAQAASNALAKIAAASPRDLRDSMAETSLWVPLGRPADGTQPAERYVQPVREAIRYEQKLTLAYQDEHGSATSRTVWPFALAFFEGKRLLAAWCELRGDYRHFRIDRIADVQRHEQRYPTRRHVLLDTWRKAHEIDPES
>NZ_CP041185.1|WP_141170995.1|3823278_3823905_-|glutathione-S-transferase-family-protein
MRLYHHPMSSNARRALMTAIHLGLSLELAEVDLMNADDRRRLGELNPNGKVPVLADGDFLLWESCAIMQYLAEQVPGQTIYPLAPKARADVNRWLFWAAQHFAPAISVLAWERAWKGMTGNGPADPLEEARGERDLHECAVVLDAHLAGRDWLCGDAVTLADFAVAAPLMYSEAVRLPLAQYQHIEAWFARVRQLRAWQETDVELLPG
>NZ_CP041185.1|WP_141171002.1|3834528_3835743_-|MFS-transporter
MTLPSSRPSLKTVLIASGVVLTLAMGVRHGLGFWMQPISQANGWTRETYSLALAMQNLMWGVFGPFAGMAADRFGTMRVVIVGAISYMAGLVWMALVTQPALFVAGSGIFIGLALACTAFGAISGIIGRSAPPEQRSWAFGISSAAGSFGQFLMMPVEQQLISAVGWQNAFYVLAALVLLAMIPMAFYLREPPVSHASGPQQSVGAAFSEAIASRSFWLLLAGYFVCGFQLVFIGVHLPAYLKDQGLMNPNIAVTALALIGLFNIVGSYYAGKLGGKIAKRYLLSAIYVTRAVVITVFLLAPLSAWSVYLFAAGMGVLWLSTVPLTNGIIAGIFGVKHLSMLAGMVFFSHQVGSFLGAWLGGYLYEHQGSYHIVWMITIGLGLLAALINLPIDERAVKRVAVAA
>NZ_CP041185.1|WP_141171003.1|3835754_3836756_-|Gfo/Idh/MocA-family-oxidoreductase
MENTVRWGILGTGKIARAMAQGLRDAPGAQLVAVASRSDAGAQAFGAEFGIERCHGSYQALVMDPGVDVIYIATPHTLHAENALLCLAAGKHVVCEKPFTMNAREAQAVVDLARDKKLFLMEAMWSRFLPAVQEAQRIIASGEIGVLQQVQADIGFVANFPPEHRMFNPELGGGALLDVGIYPLSMAAFFLGPVSQVQALAEMGTTGVDEQVVFSLLHAGGGTSSCACSLRAQTPTEMSISGSLGRIRLPNRFYKPDHLIVETMDGARRVIAAPHLGNGYAHEAIEAMRCIRAGLLESSVMPHADSVALMHNLDTMRDQIGLVYRSDLSADQA
>NZ_CP041185.1|WP_141171004.1|3836759_3837575_-|DUF3025-domain-containing-protein
MLPSIDWTRPWFATVLPARRRLDLQRDTVIVALNARARALDLRNPTGLPLAFVPQADLPEGVAYEEFIGATGGVPTRDNLHDFFNALVWLTFPRIKRQLNALQAAQIALSGVGKSRGPARDGATIFDENSALLVLRDSDAGRALEAALRGHDWRSAFIAQREKFGTGGDAEVWLFGHALMEKLVAPRKAITAHTRVIFAGDAYFALDDAARRTWLDERVAQDLARDGLTTADFTPLPVLGLPGWCEGQDDDFYNDAAVFRPKRKAAGAERE
>NZ_CP041185.1|WP_141171005.1|3837582_3838647_-|dihydroorotase
MSTLDHTPAAVPSSITITRPDDWHLHLRDGAVMASVLPHSARQFGRAIVMPNLKPPVTTTADASAYRERILAAVPEGVNFDPLMVLYLTNNTSPDEIRRAQDSGIVQAVKLYPAGATTNSDLGVTDLKNCYKVLEVMQEVGMPFLVHGEVTDPEIDIFDREAVFIERVMRPLRSAFPALSVVFEHITTKDAAQYVAEAEGPIAATITAHHLLYNRNEIFKGGIRPHYYCLPILKREEHRLALMTAAASGDERFFLGTDSAPHAQGAKEMACGCAGCYTALHAMEMYAEAFERAGALDKLEAFASFHGPAFYGVPRNTDSITLKRESWILPASLPLGDSHVIPLNAGEQINWKMV
>NZ_CP041185.1|WP_141171006.1|3838798_3840256_-|amidohydrolase-family-protein
MPDMKQIAGAMLALGLLAHAHATDRIAVDIALRDATLIDVAAGSTVKGKTVLLKGDSIVAVVDDAQLRSYAPKQTIRLPGKYLMPGLWDTHVHFGGGPELIDENKQLLPLYLAHGITTVRDCSGDLPDTVLAWRQQINAGQLQGPTIFTSGAKLEGLKPLWKGTIEVGTPQEVTRALDGLQAQHVDFVKITENTLKPELYLEALRQARERGMRTSGHIPVQLTLGQMADAGLGTIEHQSYLLRTTTPREQELTAKVAAGAMTAKEAMRESLQSYDEPTARKAFSYLAARGTAIVPTLWGSRVTAYLDREDHTHDPALQYIGKGLRATYDWRVQRAAKDGPEAIAQRHAQFEQSAKLLPILQQQGVSIIAGTDAGFLNSFDYPGQALHDEIGLYVQYGLTPQQALQSAVINGPRFLGKLERYGSVAAGKAADLLVLDANPLQDIKATRQIRLVVSRGHVYDRAALDRMLADIRAWVAQQETAPAKS
>NZ_CP041185.1|WP_099376217.1|3840284_3841010_-|amino-acid-ABC-transporter-ATP-binding-protein
MIELNNVSKWYGQFQVLTDCTTKVAKGDVMVICGPSGSGKSTLIKTVNGLEPIQQGQIIVDGISVNDPKTNLSKLRARIGMVFQNFELFPHLSIRENLTIGQIKVLGRSADEANAKGLKYLDRVGLLSQQDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMVGLAQEGMTMMVVTHEMGFAKRVANRIVFMDQGKIIEDCSKDDFFNTTRSDRARDFLAKIIH
>NZ_CP041185.1|WP_141171007.1|3841029_3841722_-|ABC-transporter-permease-subunit
MLGNFDFDVISRSWVYLFQTGMVFTLKLTALAMVGGIVLGTLLALMRLSSNRLISGVASSYVNLIRSIPLVLVIFWFYFLVPYIAAWIIGANEPVKVGAFSSALITFIMFEAAYYCEIMRSGIQSIPRGQVWAGQALGMNYRQTMGSIVLPQAFRNMIPVLLTQTIVLFQDVSLVYVLSIPDFVGAASKIAQRDGRLVEMYVFVAVVYFVLCYALSFLVKRLQKRVAIIR
>NZ_CP041185.1|WP_096238712.1|3841723_3842473_-|amino-acid-ABC-transporter-permease
MNYNWNWRIFWEMSPDGVGTYMDTLWSGLVWTLATAGAAWIMALILGLVIGTVRTLPNKWLVGVANAYVELFRNVPLLVQMFLWYFVMPELLPPDLGAWVKSLPNAPFITAVLCLGFFTSSRVAVQVTTGIEALPRGQKLAGTALGLTLPQTYRFILLPMAARVIMPPLTSEFLNIIKNSSVALTIGLIELTASARAIQEFSFQVFEAFSAATIIYVVVNLLVVVLMHLIEKKVAIPGFIVAGAKTGGH
>NZ_CP041185.1|WP_099761844.1|3842570_3843527_-|amino-acid-ABC-transporter-substrate-binding-protein
MKLTKIIATLLSVGVISSMSPVQAQELTGTLAKIKKAGSVTLGVRDGSVPFSYLDDKQQYQGYSIDLCMKVVTALQKHLGLTELKVVMSPVTSANRIPLMANGTIDLECGSTTNNLERQQQVAFAPTMFVIGNRVLSKKTSNIKTLEDLRGKTLVATAGTSTIKQMTILNKEKNLGMTIAVGKDHPESFLMLETGRAVAEANDDILLASQVANSKNPNDYEITKEALSVEPYGIMLRKGDPAFKKVVDEALIRLYKSDDINRIYAKWFTSPIPPKNINLKFPMPAQLKAVFANPTDSGDPAAYAAVPEAQKTSDKRKK
>NZ_CP041185.1|WP_141171008.1|3843723_3845577_-|ATP-binding-cassette-domain-containing-protein
MRRSQTPPPPRSPASASHSDFATIKTLLPYLWVYKWRVLLALLCLVGAKLANVGVPLILKKLVDAMTITAANPQALLVLPVGLLVAYGLLRLSTTLFTELREFLFARVTQRAVRTIALQVFRHLHALSLRFHLNRQTGGMTRDIERGTRSVGSLISYTLFNILPTLVEITLVLGYLVLHYDIWFTVITAVALVSYIAFTVLVTNWRTHFRRTMNDLDSKANTKAIDSLINYETVKYFGNEDYEAKRYDEGLQRYESAAVKSQTSLSLLNTGQSLIIATAVTLILWRATVGVINGSMTLGDLVLVNAFMIQLYIPLNFLGVIYREIKQSLADMERLFSLLNENREIADTPDASPLVTRGAAVRFAHVNFSYEAKRQILFDVDFQIPAGTTTAVVGHSGSGKSTLSRLLFRFYEVDGGSITIDGQDLRSITQDSLRAAIGIVPQDTVLFNDTIEYNIAYGKPGASKDAIVAAAKAASIHDFIESLPDGYNSMVGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSKAEQAIQSQLKEIAKNRTTLVIAHRLSTVADAQQILVLDHGRIVERGTHPQLLVLDGLYAQMWQRQQANRDDEAEEDDALAGLAPAK

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Crispr_ID: NZ_CP041185_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041185_3

5740299-5740409

Orphan

Consensus_repeat	Method
GAGACGCAGGCAACAACGTCCTGCGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041185_3

>merge|NZ_CP041185|3|5740299-5740409|CRISPRCasFinder
GAGACGCAGGCAACAACGTCCTGCGCAATCCGGACAAGTGGCGCAGGACTAGGCGCCAAGTCGAAGACAGTACGGCAGTACGGCGAGACGCAGGCAACAACGTCCTGCGCA

>NZ_CP041185|3|2|5740299-5740409|CRISPRCasFinder
GAGACGCAGGCAACAACGTCCTGCGCA	ATCCGGACAAGTGGCGCAGGACTAGGCGCCAAGTCGAAGACAGTACGGCAGTACGGC
GAGACGCAGGCAACAACGTCCTGCGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041185.1\|WP_141172172.1\|5733488_5734307_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041185.1\|WP_141172182.1\|5743274_5743538_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP041185.1\|WP_141172986.1\|5731801_5733496_+\|Flp-pilus-assembly-complex-ATPase-component-TadA	unknown	unknown	gnl\|CDD\|225363
NZ_CP041185.1\|WP_099760198.1\|5744515_5745769_+\|NADP-dependent-isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|180792
NZ_CP041185.1\|WP_141172183.1\|5746685_5748986_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|274241
NZ_CP041185.1\|WP_096234386.1\|5743661_5744225_-\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211334
NZ_CP041185.1\|WP_141172987.1\|5735929_5737960_+\|general-secretion-pathway-protein-GspD	unknown	unknown	gnl\|CDD\|227133
NZ_CP041185.1\|WP_141172176.1\|5737956_5738448_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|225076
NZ_CP041185.1\|WP_141172178.1\|5738849_5739500_+\|type-II-secretion-system-protein	unknown	unknown	gnl\|CDD\|225076
NZ_CP041185.1\|WP_010395935.1\|5742259_5742526_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NZ_CP041185.1\|WP_141172180.1\|5740414_5741962_-\|murein-biosynthesis-integral-membrane-protein-MurJ	unknown	unknown	gnl\|CDD\|223800
NZ_CP041185.1\|WP_141172181.1\|5742690_5743143_-\|DUF192-domain-containing-protein	unknown	unknown	gnl\|CDD\|376876
NZ_CP041185.1\|WP_141172177.1\|5738451_5738844_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|130771
NZ_CP041185.1\|WP_141172175.1\|5735408_5735930_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041185.1\|WP_141172173.1\|5734303_5734852_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370457
NZ_CP041185.1\|WP_096234388.1\|5746386_5746689_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|225038
NZ_CP041185.1\|WP_141172179.1\|5739740_5740223_+\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|377877
NZ_CP041185.1\|WP_141172174.1\|5734848_5735412_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041185.1\|WP_010395943.1\|5745861_5746065_-\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_CP041185.1\|WP_168208525.1\|5749167_5752536_+\|peptidase-S41	unknown	unknown	gnl\|CDD\|143478

Protein	Function_ID	Function_description	E-value
NZ_CP041185.1\|WP_141172182.1\|5743274_5743538_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0.00233757
NZ_CP041185.1\|WP_141172986.1\|5731801_5733496_+\|Flp-pilus-assembly-complex-ATPase-component-TadA	gnl\|CDD\|225363	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP041185.1\|WP_168208525.1\|5749167_5752536_+\|peptidase-S41	gnl\|CDD\|143478	cd07562, Peptidase_S41_TRI, Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active site tetrad residues are distributed between the C1 and C2 domains, with serine and histidine on C1 and serine and glutamate on C2.	1.20468e-68
NZ_CP041185.1\|WP_141172183.1\|5746685_5748986_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|274241	TIGR02639, ATP-dependent_Clp_protease_subunit, ATP-dependent Clp protease ATP-binding subunit clpA. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP041185.1\|WP_096234386.1\|5743661_5744225_-\|pseudouridine-synthase	gnl\|CDD\|211334	cd02566, PseudoU_synth_RluE, Pseudouridine synthase, Escherichia coli RluE. This group is comprised of bacterial proteins similar to E. coli RluE. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. Escherichia coli RluE makes psi2457 in 23S RNA. psi2457 is not universally conserved.	4.28139e-88
NZ_CP041185.1\|WP_141172987.1\|5735929_5737960_+\|general-secretion-pathway-protein-GspD	gnl\|CDD\|227133	COG4796, HofQ, Type II secretory pathway, component HofQ [Intracellular trafficking and secretion].	8.0124e-70
NZ_CP041185.1\|WP_141172176.1\|5737956_5738448_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	1.04304e-15
NZ_CP041185.1\|WP_141172179.1\|5739740_5740223_+\|PEP-CTERM-sorting-domain-containing-protein	gnl\|CDD\|377877	pfam07589, VPEP, PEP-CTERM motif. This motif has been identified in a wide range of bacteria at their C-terminus. It has been suggested that this is a protein sorting signal. Based on phylogenetic profiling it has been suggested that the EpsH family of proteins mediate this function.	3.86024e-05
NZ_CP041185.1\|WP_099760198.1\|5744515_5745769_+\|NADP-dependent-isocitrate-dehydrogenase	gnl\|CDD\|180792	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed.	0
NZ_CP041185.1\|WP_141172180.1\|5740414_5741962_-\|murein-biosynthesis-integral-membrane-protein-MurJ	gnl\|CDD\|223800	COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only].	1.76924e-157
NZ_CP041185.1\|WP_141172181.1\|5742690_5743143_-\|DUF192-domain-containing-protein	gnl\|CDD\|376876	pfam02643, DUF192, Uncharacterized ACR, COG1430. Two structures have been solved for members of this large (>500 members) family of bacterial proteins present mostly in environmental bacteria and metagenomes (distant homologs are also present in several Plasmodium species). TOPSAN analysis for Structure 3pjy shows that there is much similarity with the other solved structure, Structure 3m7a, solved for UniProt:Q2GA55 (Saro_0823), a homolog of Thermotoga maritima TM1668, UniProt:Q9X1Z6., The homolog in Caulobacter crescentus (CC1388), UniProt:Q9A8G6, is associated with CspD, a cold shock protein (CC1387), UniProt:Q9A8G7. However, the genomic context of UniProt:Q2GA55 is most conserved with a putative xylose isomerase, suggesting a possible role in extracellular sugar processing. Saro_0821, UniProt:Q2GA57, is annotated as an AMP-dependent synthetase and ligase. Structure 3m7a structure corresponds to the C-terminal (27-165) fragment of the YP_496102 (Saro_0823) protein and it is structurally unique, as the best hits from Dali have a Z-score of 3.8 (1nt0, 2j1t, 3kq4) and it is thus a likely candidate for a new fold. Interestingly, many of the top Dali hits are involved in sugar metabolism. There are no obvious active site-like cavities on the protein surface of 3m7a (http://www.topsan.org/Proteins/JCSG/).	3.07689e-49
NZ_CP041185.1\|WP_141172177.1\|5738451_5738844_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|130771	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	1.99627e-16
NZ_CP041185.1\|WP_010395935.1\|5742259_5742526_+\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.90132e-21
NZ_CP041185.1\|WP_141172173.1\|5734303_5734852_+\|hypothetical-protein	gnl\|CDD\|370457	pfam09379, FERM_N, FERM N-terminal domain. This domain is the N-terminal ubiquitin-like structural domain of the FERM domain.	0.0010202
NZ_CP041185.1\|WP_096234388.1\|5746386_5746689_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|225038	COG2127, COG2127, Uncharacterized conserved protein [Function unknown].	2.39383e-39
NZ_CP041185.1\|WP_141172178.1\|5738849_5739500_+\|type-II-secretion-system-protein	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	3.22231e-10
NZ_CP041185.1\|WP_010395943.1\|5745861_5746065_-\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	2.52251e-38

>NZ_CP041185.1|WP_141172179.1|5739740_5740223_+|PEP-CTERM-sorting-domain-containing-protein
MKLKFIAAGIMAAASFSAYAGDQVLDITADGDVHTFNAVVGDGILSGGLDEIILNGLGAGKYNIGLSITGQKLTFNALTSNLNNQLGEAFSVGGLKFFGVEYSGVGPFKLQLFGNALAGANYSGTYTVSAVPEPATYGMLLGGLGLLGFMARRRSAKKAA
>NZ_CP041185.1|WP_141172178.1|5738849_5739500_+|type-II-secretion-system-protein
MHARAQRQRGFTYLGLIILVAILGLVGAAGLKMGSLLQRQAAEQELLDIGAQFSDALYSYAAATPPGQPQQPPNLAALLRDPRFPQVRRHLRKLYADPITGRAEWGLLYQPGSNGIIGVHSLSPAAALKVGNFEARFAGFDGKARLSEWHFMVDARVSSVPSAGQAAVPASDEAGITPALPALPLFSRTVTPPQEQAPTEPDEQPEPQNSAENTSG
>NZ_CP041185.1|WP_141172177.1|5738451_5738844_+|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MAANNHAARARGFTLIELLVVLGIVALLLTLAVPRYFPSLDKAKETVLADNLRNLRITIDQYHGDTGRYPDTLEQLVDKKYLRAMPIDPITESESTWLIVAPPDDTPGQVYDVKSGAPGKDRNGTPFADW
>NZ_CP041185.1|WP_141172176.1|5737956_5738448_+|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MRLAHARKGQGGFSLIELLVTLAILGVLATLVVPVTQVAMQRRQEQDLRRALRDIRQALDAYKRAGDEGRIVRATDASGYPKSLEVLVEGVPDQRNPKRSKMFFLRRVPRDPFNADASLSDAQTWGRRSYASEATEPREGDDVYDVYCTSSKTGLNNVPYRLW
>NZ_CP041185.1|WP_141172987.1|5735929_5737960_+|general-secretion-pathway-protein-GspD
MSRSFSSALLLVLLSGCAGQQAYLDGRELIAQNQVPAGLQKLQEALQQDPGNVQYRSAYLQARERATSTGLQQAERQAQTGQGELARAGFLGVLEIDAQNERATSGLRALEREQRQGKLLADARTAFDAKQYDPARQRLNAILTEQPNHAGARALQREVDEKTAPPIVESGLAKSYKQPISIEFRDAPLKQVFELIARRSGLNFVFDKDVKADAKTSIFLKNSTVESAIYFLLVTNQLEQQVMDANTILIYPNVAAKLKEYQEVLVKTFFLANADAKQVANTLKTILKTRDVVADEKLNLVIVRDTPEAIRLAERLIALQDVPEAEVVLELEILEVKRSRLLELGVAWPTSLTLTPLSTSGGMGLTISDLNNLNQRSIGVSDLSVTANINKKDGDANILANPRIRVRNREKAKFVIGDRVPVVTTTISPGTGGFASESVSYLDVGLTVNAEPTIYLNNEVGIRISLEVSNLGAATVTRSGSTLYQIGTRQASTMLQLKDGENQVLAGLINNEERSSGNKVPGLGDIPVLGRLFGSSKDDSQKTEIVLSITPHLVRTVQRPEAKESEFSAGTEGSFRRRPDMAAKAATQMPGTVIVRSGASAVGMQAPPPQPLMVPGQVPQTLPQPQTVASPEVTPSPETPAASPLPLSSGQPMPLPVSPLPLSSGQPVPVAQPTAK
>NZ_CP041185.1|WP_141172175.1|5735408_5735930_+|hypothetical-protein
MTPRHYLLLAGVLGAGALLLFGERQPVSEVAEAVERAVAPARQRAARPAVAQPAILALLPRSEVAGEDGDTFGGADGVFQSQNWTPPPPKMAVTAAPPPPPPMAPPLPFVYLGKAAADGAWEVFLSRADKTYIVRANTVIDGAYKVVTIAPPVMTLTYLPLNQVQQLNIGVFE
>NZ_CP041185.1|WP_141172174.1|5734848_5735412_+|hypothetical-protein
MMAIDLHTLRLRAQLLLRRVGTPACIAVALLVLGVAAWTWAWQQRAVAAQLAARPLPAASLAAVAAVPVATSGENLARFHATLGQQRHVEQQVKLLFDLAAKNGLQLAQGEYKSGYDKASRVATYQVTLPLKGSYAAVWQFALQALRAMPFASLDELSFRREQIADTQLEARLRLTFYLADSAGEAP
>NZ_CP041185.1|WP_141172173.1|5734303_5734852_+|hypothetical-protein
MTRLDIDFAPPGWRRSLHRVPAWAWITGALGVALIATAAYSGSAALQRQQASEMQWQRAQQRVAQAAQEPPPMAIVPIAPAQAAAVNAAILQLNLPWRDLQDALASATPPGIALLALEPDARKRVLKITAETTSSDAMVAYVAQLKQQQLFGVRVQLLRHEINALDPNRPLRFQLEARWGAP
>NZ_CP041185.1|WP_141172172.1|5733488_5734307_+|hypothetical-protein
MRRAFGMGLRLGVAAGSISLWRSSRWRAPAWTLLREVAYVPDTGLHGDFAALGQALEQILPEGQYARWPLSVVLDDALARLWQVDMPQGAARLADIEAAAALRFQSLYGDPPGLWQSCHAWDARAPFFCAVPRALLAQLARVALDRKLALIFITPQFARHWNRWHGALKPGAWFGQLQENTLTLGVRHDGRLRAVRALPVPPDAGHGWLVQTLAREALLQGVPAPAQLQLCGAPPSGWLAPAAAFQCQFFSTPDGDGALSPAARLARSAGLA
>NZ_CP041185.1|WP_141172986.1|5731801_5733496_+|Flp-pilus-assembly-complex-ATPase-component-TadA
MHTDSAPTVTIDAALLQSARALCLHSKRSLVEELQQLSGIEARAVVRELARPFGLGVLETADMLAYVPAFDLLPLSQALARHSVLLRAADGQLVGVIADPFDLDLQTWLGARAGQASLTVRLALQADIGAYLSKQEESARAVDNLLPGAANDARRDGKTAAVLSFASVSEAASPAVKLVNSTLYDALKAGASDIHLESTAGGLAVKYRVDGVLDHATSVNGIEVAEHIISRLKVLAELDIAERRVPQDGSFRVESGGREIDLRVSIMPSIHGEDAVIRILDKRAMIEAYGALTLEALGFDAPSLEALRALAQEAYGMLLVTGPTGSGKTTTLYAALTEIHNGREKIITIEDPVEYQLPGILQIPVNEKKGLTFAKGLRSILRHDPDKIMVGEIRDRETAEIAVQSALTGHLVLTTVHANNVFDVFGRFTHMGIDPYAFVSALNGIWAQRLIRTNCPHCATEYTPDDGELASVGLARADVDAYQFKQGKGCGDCRGTGYKGRRSIAEILVLTDEIRELIVDKKPIRQIKAAAYANGTRSLRLAALELVRRGATTITEIKRVTLHA
>NZ_CP041185.1|WP_141172180.1|5740414_5741962_-|murein-biosynthesis-integral-membrane-protein-MurJ
MNLLKTLAAISSMTMLSRVTGLLRESLFARAFGAGAYTDAFIVAFRIPNLLRRLFAEGAFSQAFVPILSEYKNQHGQEASKQLADHVATTLVWATLLVSAIGIVGAPWFVYAIATGLTKDAGAFDAAVWMTRLMFPYITCMSFVALAGGILNTWREFKIPAFTPVLLNLSFIAASLFLAPHLKQPIYAMAIAVFAGGLLQVAIQIPALIKIGMLPRLSLNPAIGLSDGGVRRVLKKMGPAVFAVSAAQISLMINTSIASRLTEGSISWLSYADRLMEFPTAMLGVALGTILLPSLSKANVDGDKTEYSALLDWGLRLTFLLALPAAVGMATLATPLIATLFHYGKFTAESVTMSTQPLVAYSLGLIGIILVKTLAPAFYARQDIRTPVKIAIGVLIATQLMNLLFVPYIAVAGLALSIGLGACLNASFLYWGLRKRGIYQPKPGWAKFFLRLLPALIVMGGVAYAGAMRIDWIAMQAHPLLRAGALALVVAVCGVAYFVTLFLAGFRFRDFKRHA
>NZ_CP041185.1|WP_010395935.1|5742259_5742526_+|30S-ribosomal-protein-S20
MANTAQARKRARQAVKQNAHNSSQRSTLRTAIKAARKAIQGGDKAAAAAIFQASVSTIDRIADKKIIHKNKAARHKSRLAAALKALSA
>NZ_CP041185.1|WP_141172181.1|5742690_5743143_-|DUF192-domain-containing-protein
MKTSLRRLSLSIALLACASIAQAQTPQGKSLQLSAGMHLIQAEVAATEEQREQGLMYREKMPANAGMLFVFGTPSTQCMWMKNTPLPLSVAFIDASGKIVNIEDMQAHTLDSHCSTRTVPVRYALEMNLGWFKQKNIKPGMSIGNLPATR
>NZ_CP041185.1|WP_141172182.1|5743274_5743538_-|hypothetical-protein
MLAASLLAGAALAQSGAKVHASAATDAVKPPPASASASASSHASAATDAVKPAAASVNASAATDAPRLIPHPRKTKQPAAETGKPVK
>NZ_CP041185.1|WP_096234386.1|5743661_5744225_-|pseudouridine-synthase
MPLILFNKPFQVLCQFSPQDGRATLADHLTIPGIYPAGRLDADSEGLLLLTDDGRLQHEISHPDRKEAKTYLVQVDGVPDAASLARLQAPLDLGDFITKPCKAVRIAEPDWLWPRNPPIRARADKPTSWLAITLKEGKNRQVRRMTAAVGLPTLRLVRSAIGPFSLASHPLLPGEWCEVPAENIGKA
>NZ_CP041185.1|WP_099760198.1|5744515_5745769_+|NADP-dependent-isocitrate-dehydrogenase
MYQHITVPADGQKITVNADFSLNVPDNPIVPFIEGDGTGIDISPVMIKVIDAAVAKAYGGARKISWMEIYAGEKSTNVYGPDVWLPEETLAVLKDYVVSIKGPLTTPVGGGIRSLNVALRQQLDLYVCLRPVRYFTGVPSPVKEPEKTDMVIFRENSEDIYAGIEYQQGSPEAKKLMDFLINEMGVTKIRFPATSGLGIKPVSIEGTQRLVRKAIQYAIDNDKPSVTIVHKGNIMKYTEGGFRDWAYALAQTEFGAELIDGGPWCKFKNPKTGRDIIVKDSIADAFLQQILLRPAEYSVIATLNLNGDYISDALAAQVGGIGIAPGANLSDSVAMFEATHGTAPKYAGKDYVNPGSLILSAEMMLRHMGWLEAADLIISSMQKSIASKRVTYDFARLMEGATQVSCSGFGDVMIEHM
>NZ_CP041185.1|WP_010395943.1|5745861_5746065_-|cold-shock-protein
MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAINMNGFKTLKEGQKVQFEVTQGPKGKQASNIQAA
>NZ_CP041185.1|WP_096234388.1|5746386_5746689_+|ATP-dependent-Clp-protease-adapter-ClpS
MATKHDTETLLERQVLKPPPLYQVALLNDDYTPMEFVVAIIEEYFNKDRETATQIMLSVHRYGKGVCGVFSKDIACTKVEFVLTHARKAGHPLQCVMEEV
>NZ_CP041185.1|WP_141172183.1|5746685_5748986_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MIAQELEVSLHMAFVEARQARHEFITVEHLLLALLDNPSAAEVLRACAVNIEDLRKTLTNFISDNTPTVPGTGEVDTQPTLGFQRVIQRAIMHVQSASNGKKEVTGANVLVAIFGEKDSHAVYYLHQQGVTRLDVVNFISHGVRKDQSTESAKASEGVEDAPVEGQPKESPLDQFTQNLNKAAAEGKIDPLIGREEEVDRVIQILCRRRKNNPLLVGEAGVGKTAIAEGLAYRITQSDVPEILQNAVVYSLDMGALLAGTKYRGDFEQRLKAVLKQLKDNPNGILFIDEIHTIIGAGSASGGTLDASNLLKPALANGQLKCIGATTYTEFRGVFEKDHALSRRFQKVDVNEPTVEQTIQILRGLKSRFEEHHGVKYSASALSTAAELAARFINDRHLPDKAIDVIDEAGAAQRILPKSKQKKTIGKAEIEDIIAKIARIPPQTVNQDDRSKLQTIDRDLRNVVFGQDPAIDALASAIKMARAGLGKTDKPIGSFLFSGPTGVGKTEVAKQLAFILGIELIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAITKKPHAVLLLDEIEKAHPDIFNILLQVMDHGTLTDNNGRKADFRNVIIIMTTNAGAESLQKASIGFTNSKQAGDEMADIKRMFTPEFRNRIDATISFRALDQDIILRVVDKFLMQLEEQLHEKKVEAVFTEKLRAFLGKKGFDPLMGARPMARLIQDLIRKALADELLFGRLVTGGRVTVDLDGKDQVLLEFPEPPDAAPTAAPETVEVE
>NZ_CP041185.1|WP_168208525.1|5749167_5752536_+|peptidase-S41
MKISRTLTLLLLSAGLQGNAAAAAAAPAGSYFRFPAVRGDTVVFTAEGDLWKSSVRGGAAQRLTTHPGYETNAAISRDGLWLAFSAAYEGAQEAYVMPLAGGLPRRISFDNGGVLVLGWTAQGEVLVSTQNTDGPASRRIVAAIDPVKQTRRVFPVADANDAVLDDAGKTLFFTRFGLAVTNDNVRNYRGGAHATLWRYDLGGKGEAVRMHTDPAVLAGNNKRPMWWQGRVLYISDEGGSDNLWSMLPDGSDRRALTSHTQWDVRNAALGDGKIVYQLGADLRVLDLAAGTDSSPLPISLVSDFDQQRARQIRSPLDTLSNVQLSGKDERIILTARGRVSIAGTGSLRRVDIAIPEGARARDAVFSSDEKSVFAIVDTSGENEIWKYAADGSGKGEQLTTQGDNHRWKLYPSPDGRWLAHTDKKGRFWLLDLATKGNQLIDDAGKAGVDKHDEVQWSPDSRNLAIVRVASNEQREQIGLYNLASKQLQFVTSDRYTSGSPVFSPDGRWLYFLSARNFQLANGSPWGDRNMGPVFDKRIGVYALALQPGNRFPFQPDDELSRPGVKPAETDDEKAAELAAEKALEKAGGKTSVKKAPAALPDVVFKGLAERLYEVPLAAGNYGALAMDDKRLYFLERDSGENKSSLKTLAIGNTGSKPEVLVANVREFDLAQDKKHLYYRTAAATGPGEMLVIEAGAKLPSDLSKAKVKVDDWTFVSNPRLEWKQMFNDAWRLHRDFLYDAKMRGVNWKAARDKYAPLVERVTDRAELNDVLGMMVAEVGALHSQIRPGELRRTEQEGTPAGLGAVLARTSEGYLVEHVYRSEAELPSARAPLSRPEVDVKAGDVITAVNGKDVLAARDISDLLLNQADKQVLLQVQRGKGAPRAVIVTPVNMAKQTALRYGDWELSRAEQVAAASQGRIGYLHLRAMGANDIASFARDFYANINREGLIIDVRRNNGGNIDSWIIEKLLRKAWAYWAPPGVQPSSNMQNTFRGHLVVLVDELTYSDGETFAAGIKALKLAPLVGKRTAGAGVWLSDNTRLADNGMARVAENGQFGIDGQWLIEGVGVVPDVEVENPPHATFNGADRQLEVALDMLAKKLKEQPRPAFQAQPIPALKQGATVR

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Crispr_ID: NZ_CP041185_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041185_4

6001083-6001160

Orphan

Consensus_repeat	Method
GGCGGTGGTGGCGGAGGTGGCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041185_4

>merge|NZ_CP041185|4|6001083-6001160|CRISPRCasFinder
AAGCGTGGTGGCGGTGGTGGCGGAGGTGGCGGCACGACCACGACGACTTCTTCACGCACTGGCGGCGGTGGTGGCGGT

>NZ_CP041185|4|3|6001083-6001160|CRISPRCasFinder
AAGCGTGGTGGCGGTGGTGGCGGA	GGTGGCGGCACGACCACGACGACTTCTTCA
CGCACTGGCGGCGGTGGTGGCGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041185.1\|WP_141172356.1\|6013497_6015396_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226654
NZ_CP041185.1\|WP_046682431.1\|5997412_5997967_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041185.1\|WP_141172353.1\|6010348_6011029_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041185.1\|WP_141172351.1\|6002110_6007948_+\|alpha-2-macroglobulin	unknown	unknown	gnl\|CDD\|225248
NZ_CP041185.1\|WP_141173007.1\|5998538_5999630_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NZ_CP041185.1\|WP_141173008.1\|6007965_6010050_+\|penicillin-binding-protein-1C	unknown	unknown	gnl\|CDD\|273954
NZ_CP041185.1\|WP_070224915.1\|5993870_5994257_+\|phage-holin-family-protein	unknown	unknown	gnl\|CDD\|227681
NZ_CP041185.1\|WP_141172348.1\|5996130_5996433_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041185.1\|WP_141172349.1\|5999685_6000633_-\|YihY-family-inner-membrane-protein	unknown	unknown	gnl\|CDD\|377085
NZ_CP041185.1\|WP_099760049.1\|5994332_5994671_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041185.1\|WP_096234587.1\|6012151_6013498_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP041185.1\|WP_141172355.1\|6011710_6012046_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041185.1\|WP_141172354.1\|6011190_6011709_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041185.1\|WP_010396415.1\|5996477_5996630_-\|DUF3309-domain-containing-protein	unknown	unknown	gnl\|CDD\|378708
NZ_CP041185.1\|WP_096234579.1\|5998049_5998361_+\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|225379
NZ_CP041185.1\|WP_141172357.1\|6015426_6016218_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224041
NZ_CP041185.1\|WP_099760047.1\|5996697_5997144_-\|glycine-zipper-2TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|225675
NZ_CP041185.1\|WP_096234589.1\|6016229_6017051_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NZ_CP041185.1\|WP_141172352.1\|6010046_6010295_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041185.1\|WP_141172347.1\|5994808_5995963_+\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|132848

Protein	Function_ID	Function_description	E-value
NZ_CP041185.1\|WP_141172356.1\|6013497_6015396_-\|sensor-histidine-kinase	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	0
NZ_CP041185.1\|WP_141172351.1\|6002110_6007948_+\|alpha-2-macroglobulin	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	1.23677e-94
NZ_CP041185.1\|WP_141173007.1\|5998538_5999630_+\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	5.47933e-41
NZ_CP041185.1\|WP_141173008.1\|6007965_6010050_+\|penicillin-binding-protein-1C	gnl\|CDD\|273954	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C. This subfamily of the penicillin binding proteins includes the member from E. coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this subfamily are presumed to have the same basic function. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP041185.1\|WP_070224915.1\|5993870_5994257_+\|phage-holin-family-protein	gnl\|CDD\|227681	COG5393, COG5393, Predicted membrane protein [Function unknown].	4.2742e-11
NZ_CP041185.1\|WP_141172349.1\|5999685_6000633_-\|YihY-family-inner-membrane-protein	gnl\|CDD\|377085	pfam03631, Virul_fac_BrkB, Virulence factor BrkB. This family acts as a virulence factor. In Bordetella pertussis, BrkB is essential for resistance to complement-dependent killing by serum. This family was originally predicted to be ribonuclease BN, but this prediction has since been shown to be incorrect.	1.78724e-42
NZ_CP041185.1\|WP_141172357.1\|6015426_6016218_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	4.97918e-128
NZ_CP041185.1\|WP_096234587.1\|6012151_6013498_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	0
NZ_CP041185.1\|WP_010396415.1\|5996477_5996630_-\|DUF3309-domain-containing-protein	gnl\|CDD\|378708	pfam11752, DUF3309, Protein of unknown function (DUF3309). This family is conserved in bacteria but its function is not known.	3.20196e-09
NZ_CP041185.1\|WP_096234579.1\|5998049_5998361_+\|BON-domain-containing-protein	gnl\|CDD\|225379	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only].	2.99992e-18
NZ_CP041185.1\|WP_099760047.1\|5996697_5997144_-\|glycine-zipper-2TM-domain-containing-protein	gnl\|CDD\|225675	COG3133, SlyB, Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane].	1.90688e-19
NZ_CP041185.1\|WP_096234589.1\|6016229_6017051_-\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	2.54906e-81
NZ_CP041185.1\|WP_141172347.1\|5994808_5995963_+\|patatin-like-phospholipase-family-protein	gnl\|CDD\|132848	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.	3.98697e-48

>NZ_CP041185.1|WP_141172349.1|5999685_6000633_-|YihY-family-inner-membrane-protein
MNFSTRYPRLAGLVPFSKQMRSVIVCSVTEWLEHRASSKGAALAYYTLFSIAPILVLVIAIAGFFYGPAAARGELMGQLQGLLGTQGAEAIQLVLAGAKNHDQGRIATLIASALLLFGATSVFAELKASLDEIWQVPPLKEAGAWDMLRTRLLSFGLVLVLAFLLMVSLVVNAAMAILANFWEGVWKDTAVLFTILSNLIGFAVIASLFAVIYKMLPRVRLSWRDVLIGAIGTAFMFSLGKYAIGVYIGNSGVASSYGAAGSLVALLLWVYYSAQIFFLGAEFTRQFALQLGSMKDMPKTDDGDVQVKILKRHQS
>NZ_CP041185.1|WP_141173007.1|5998538_5999630_+|AI-2E-family-transporter
MRLPLHVNARGLALGIIATVSFIYALQWAQKFLIPVLFGIFIAYTLNPVVAWLEKLRLPRAIGATAVTALILFGSVVVIERVQGEFESIVEELPAATQKLSRLIAENTGGKNSTFQKMQAVANAIEQVAAGAEARRNNRRAAAAEAPNFKIMDWVWAGSLGLVGFLSQATMVIFLVFFLLLSGDTFKRKLVKLTGPSLSRKKVTVHILEDINTSIQNYMFMLLVTNVLLAVLMWIALRVIGLENAGAWAIVAGLLHIMPYFGPLLITIATGLVAFLQFESLEMVLLVTGTSMAIATLVGTFVTTWMTGRIARMNPTAVFISLLFWGWLWGVWGLLLGVPIIVIVKVVAERVQGMEAVAELLGE
>NZ_CP041185.1|WP_096234579.1|5998049_5998361_+|BON-domain-containing-protein
MKFTKSIATGLFIASLFAVAGCASTPTKEGTGEYIDDAAITTKVKASIFNEPTLKSTEINVETFKGVVQLSGFVAQPADAAKAGEITRGVKGVKSVKNDIRVK
>NZ_CP041185.1|WP_046682431.1|5997412_5997967_+|hypothetical-protein
MNKNKLFTAIVVSLACAAWGGQAVAATPEAKAAYKAANEQAGLNYKLAHAECEKITGNPKDVCIAEAKAVRTYDEAVAQAQYTNTLRAYTKARIKIADANYDVDLARCNALTGNDKDVCVKLAKSTKVAALADAKADKKVIEARSDAREAKRKAEYKVATEKCDALAGAAKDDCIKAAKTQFGY
>NZ_CP041185.1|WP_099760047.1|5996697_5997144_-|glycine-zipper-2TM-domain-containing-protein
MKTNATLAALMLAATAVLSGCATGPTQSQQYYPANQPESAMYGTVDSIQIVQGGGQTSGAGAVVGGIAGALLGNTIGSGGGRTAATVAGAVAGGVVGNQVEGRRQQAQAYQISVRLDNGEYRTVVQDNANDLRPGNRVRVVDGRVYRY
>NZ_CP041185.1|WP_010396415.1|5996477_5996630_-|DUF3309-domain-containing-protein
MGTIILIILILALVGVLPTWPHSRNWGYGPSGIAGLVVVILILLLLTGRL
>NZ_CP041185.1|WP_141172348.1|5996130_5996433_-|hypothetical-protein
MTIHNTLLATVFACSLAPLALAQTATPQPGDPQRWYQEDSTAQAQLRTLRKEIAAALGEAKKACRSEPSATRASCLKDAQDTYRQDMAHAEKLREAAHPQ
>NZ_CP041185.1|WP_141172347.1|5994808_5995963_+|patatin-like-phospholipase-family-protein
MTNSKTPINQLNPSRLRIVLVLQGGGALGAYQAGVYHALHEHGLVPDWVVGTSIGAINAAILAGNKHEDRLVRLKQFWQRVAHRDSIDMNLVSDQQRRSNIWLATLDTVLRGVPGFFKPRSFSLFPAGIAVKPEDASYYDTSELASTLGELVDFDYLNQPGSMRLTVNALRVKCGSLTSFDSQQQPLTADHIRASGALPPGFAGVRVDGDLYWDGGLYSNTPLETVLDDTPHVDTLVFMVDLWSSEGPEPTTLDEVQTRQKDVTFASRSKRHIADYVNTHTLQRKLRELYAGLPDTKHNRQQTEELVALGCDSTMHIVRLPYAGRDWHMAAKDINFSRGSIEWRWEQGYQDALRAIKAAGWLAFVTQDTPLVVHELPPYERDAA
>NZ_CP041185.1|WP_099760049.1|5994332_5994671_+|hypothetical-protein
MSENDKLAAQAARKRLLIAQGEMYRVGIVHARANVGYALRPESLLQGVVETAVGFAGHRVESLLAPGGMRLQGAMPYVLTALSFIGRKKLVKPALVLLAVAAVAASWLRRKR
>NZ_CP041185.1|WP_070224915.1|5993870_5994257_+|phage-holin-family-protein
MDKSASSHQGPGLIGSVAGLAKNAVGLMLSRLELATIELSEVRNHMLQLVVIFALATVAGLFAIAYGSVLIVFLAWDSLGWKILAIMTVVFVLLAIALVMYARAMLRQGKLSMPATMAELKADRDMLM
>NZ_CP041185.1|WP_141172351.1|6002110_6007948_+|alpha-2-macroglobulin
MPAAFACLVLLPPGNFCAPQPAPPLFIKESPVPDLSRVVSSPLSGKLGRLCLSLSLGLAMPAWADSGVALFSPSGTVKAVRQVRAQFATPMVPFGDMGLPAPFAIDCGKAEPALVAGAGRWADERNWNYDFERDLPAGVACSFSLKPGLKDLAGKPLQGTASYRFSTGGPAIVEAVPYDGQPYIDENQIFVLGLDAAPNEASVAANAYCRADGINEKIPVRLFKGKELEQVLTLRKSFLDRYLTVYFKKRGTVWKVGMPVASKGAPPLPVTVLQCKRSFPANAKVSLVWGEGIASASGIATDKAQTLQYKTRPDFTAKFSCERSNPKEQCIPFLPMRVQFSAPVSAAQVRAMTLKGGGKTYAPTISKDEEKAEFLYGATFNGPFPVQASFVLNLPPKLTDDAGRALLNRARFPMTVRTGEQPPLLKFPAPFGIIEAKGDGLLPVTVRNIEPVLSGKEVAQASAAATGATLRVPDNDDKFIIEWMQRLAGNGDGGEYWQPYAQYAGNMSRSVLADASGTRPISLPRPDGKKTFEVIGIPLLKPGFYVVELASPILGKVLLSKPTTAYIRTAALVTNLAAHFKHGAQSSLVWVTTLDKGAPVAKAQVAVRDCGGKLLWQGATGSDGVAQIPGELAASSCKNNGRYFISARSGGDMTFTLSDWVGGIEAWRFNLPTDDTRADNTLLATVFDRTLLRAGETVHMKHFIRKHTAEGMSLVDKNNGPGSATSIVITHQGSDQNYQLPLRWSASGTAENDWVIPADAKQGEYSVTMAGRPSGSFRVEAFRVPTMKAVLQGPKAPAVQVKQLALDAQITYLAGGAATNAPVKLRTVLQDKSVTFADYPDYSFSNGDVKEGLVKQGTGYDDDEGEWQDEGHGGRVGAGAAAARTQSLTLDKAGGARIVIDQLPQLSTPRDLVAEMAFQDANGETASVATRVPLWPSNYVIGIKPDAWALSKDAFKFTVAVLGTNGKPVANAPVAVDFFQRNSYSHRRRLIGGFYAYENSSEVVKLGQACSGKTDNKGLLICDVKAPASGNLILRARTQDAAGNAAVANRETWVAGSGDWWFNASDNDRIDVLPEKKRYEPGQEASLQVRMPFRSGTALITVEREGILDTYVRQLNGREPVVNIPVKANYAPNVYVSVFVVRGRVDGVQPTALVDLGKPAYKMGIAPLNVGWQAHELNVMVVSDKEVYKTRDKAEVSVRVRRADGKPLPAGAEVALAAVDTGLLELMPNDSWKLLDTMMAQRSLQVETATAQMQVIGKRHFGRKAFPAGGGGGKGASRELFDTLLFWKGTVKLDAKGEATVQVPLNDSLTGFRIVAIASAGKELFGTGSTDIRSSQDLILMSGLPTLVREGDQLRAGFTVRNTSAASLNVDLNASAGGKALPRQSLTLAAGEAREVGWDYQVPLGVQNIVWEIGAKAGSHTDKLKITQKVGQATPVRTYQATLLQIDKPVNMSVQMPAGALPGRGGVQTSFVARLGGELPGVREYMAAYPYTCFEQNTSKAIALQDQEAWNKLAASLPAYLDSDGLLKYFPIMEQGSDSLTAYVLSATREAGYAIPEQTKNRMEAALTAFVQGRIVRHSALATTDLAVRKLAALEALSRSNKVPPDALESISISPNLWPTSAVIDWSLLLQRTPSLARRDALLAEAQQILRSRLNFQGTTMGFSTERKDNWWWLMVSGDVNANRLLLAVMDDPAWKDDIGRLVRGSMGRQKKGRWDTTVANAWGTLAISKFSAKFESTPVTGASAVKLGGDTQALVWNGAAKVGPVLQAWPKGMDTLGLAHSGTGKPWATVQSLAAIPLKAPVSSGYTIKKTITPVEQKTTGHWSRGDVYRVRLDLSAQADMSWVVVDDPIPASATVLGNGLGRDSQLLTAGEKSTGWVWPTFEERAFDAFRAYYAFVPKGTWSVEYTVRLNNAGDFSLPATRIEAMYSPEMFGESPNANVKVAQ
>NZ_CP041185.1|WP_141173008.1|6007965_6010050_+|penicillin-binding-protein-1C
MGCLLAGPAVAEAILTPAQVQAAYRSSEAQLLDRSGAPLQSLRVDMKVRRLPWVPLADISPAVQQAVLLAEDQRFLRHGGVDVSALATAAWDNLFSKKPRGASTITMQLAGQLDADLQASSGGRSLRQKWDQMRAAQAIEDSWSKAQIFEAYLNLVSFRGELQGIASASYSLFGKAPSGLNQTDGIILASLVRAPNAPPATVTRRACALAKEWRMDSSCQLIGQRVQTALQRTALYADLAPAPQVAQQLLKQSGASVRSTLDGPLQRFAQENLRQQLASLRERNVNDGAIIVLDNRSGEVLAYVGNAGGNHVDGVTALRQAGSTLKPFLYELAIERRLMTAASVMDDSPLDVATASGMYAPQNYDRNFKGYVSARTSLASSLNIPAVRTVLLTGQDGFYNRLKDVGLSSLTEPAEYYGPSLALGSSEVTLLELANAYRALANGGLYSTASLQPGQAGKERRRVMEAGAAFIVGDILADRAARSMTFGLRNELGTNFWSAVKTGTSKDMRDNWCMGYSARYTVGVWVGNFDGKPMWDVSGVTGAAPVWRDVMDYLHKNVPSHAPKAPPGVLQQMVAYQPALEAPRREWFIAGTESPVIAVLGDTVKPPAIVYPAEDSILAIDPDIPPALQRVFFQAQGSHALRWVLDGKDMGAALDSISWRPVPGKHALALVDVAGKTVAQVAFQVRGNALASLN
>NZ_CP041185.1|WP_141172352.1|6010046_6010295_-|hypothetical-protein
MSPIERKWWFMLPVMTVAAVATLFLLDSANVPNTNPFARGLIFGLCFTSLHRGLSFCIWMGLLWGAPALADSKLAKGTDRPA
>NZ_CP041185.1|WP_141172353.1|6010348_6011029_-|hypothetical-protein
MKAAWQTMLAAGVLAAAGAQAAPTVGECMELTTGIKFSKNNGDAQVNVEETFEGKKLKGTQLILDGGVLLATSYQDIRDGQVFLTGTVHYNEDGSVRSKNVYAPQSAIPAAMRPGQEVRVQFTDTQTSTHYPLAGLSDKITTSTRTDKRDFSITFLGWERLELGGRRFPDACKFELRDVGGKSKGKSGEYVWYAQGYGVIMTDKLDQDGEVQPAYRIALTNILSAP
>NZ_CP041185.1|WP_141172354.1|6011190_6011709_+|hypothetical-protein
MTLRLSILLSLLCGALALPAAQAEDAPYAMRAASPPVPGALDLGFMNEAPNRKFKRRVDLSAITRADDLAVVKAAINPVVVFFQVTGAVRQPAHAIRMVTTRNGELALIKPPRIDDYNYLLARRLWNWTVHDAQTISLTVEFVGLSHTQPRYSNTYVFVERYGTWLFDRHVL
>NZ_CP041185.1|WP_141172355.1|6011710_6012046_-|hypothetical-protein
MKTAALLLAATLMTVGGAWVQAQSTTNVNQTGNHTNNPNDPGQKSDQSDKLDNKGKLVHDAKPAKARTDKRTRRGKPTADDVDKPYSGKPVATPDTPAASAAATSPPATPR
>NZ_CP041185.1|WP_096234587.1|6012151_6013498_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MHENNFEGMQVLLVEDDAVVRKGARQSLELAGLQVTAVATAEEALPWLVPEFAGILLSDIKLPGMDGLKLLDIAVAQDASLPVILVTGHGDVSMAVGAMRRGAYDFIEKPFSADLLVEVCRRALDKRHLVLENMNLRRQLEQRVGIEARIVGRSAAMAKVRQLVLNLAPKSADIIILGETGTGKELIARCLHDFSERRDHPFVAINCGALPESIFESELFGHEEGAFTGAQRQRIGKIEYANGGTLFLDEIESMPLALQVKLLRVLQERQVERLGSNKLISVNFRVIAAAKEDLSVLAEQGKFRPDLYYRLNVASLTLPALRNRREDIPLLFEFFVLQAALRYGQPAALVSGELIASLMAQRWAGNVRELHNVADRFVLGLLDDTLSPAGCREASLAEQVDTFEISIIEEALRRHNGNVIEAAAALNIPKKTLYDKLKRFDISTEQFR
>NZ_CP041185.1|WP_141172356.1|6013497_6015396_-|sensor-histidine-kinase
MGSDPAGQTPRLFAPLLAVGSLVLLTWASYAWVKQRQLDELHRTLDSRAELYAASIGGALNKYEFLPLAVAQSDAVAQLLEQPSADRVTQINAYLVDMNRRAGAFAVYVLDDKGTTLASSNWQARSSYVGVNYGFRPYFKNAIAGGIGRFYGIGFSTFEAGYFISQPVQRDGRIIGIVAAKVNLDWIEQSWRTPGAGEQIWVKDANGVIILATTPAFKFKTLAPLSPAAKNDISAQRQFLQENLPILPHKVLRQFADGASVMTLERQQSGDTPALSGSADKADYLAVNRALGPLQWQITVLAELDQVNEAARNAAMAAALGWALLLLALMYARQRRRRIADKLNAQQTLARAYEQLEIKVEQRTADLVHANGRLQAEVAERERAEQTLRYAQAELVQSGKLAAIGQMAAGVTHELNQPLAALQTFSDNAKVFLARGQIDDALDNLSTISDLVKRLGYVTSQLKGFARRSDDARKPVSVRQAFAQTMLQIRTRKHSQRLTLHESWQEDDIIVLCNAIGLEQVFTNLITNAMDAVPESEPVQIWFQVRREGSLAVLHITDNGPGIPLASLDKIFDPFYTTKEHGLGLGLSISAGILRAAGSALAVRNRSAQEGGGAQFTITLSCDPGERDEGTI
>NZ_CP041185.1|WP_141172357.1|6015426_6016218_-|ATP-binding-cassette-domain-containing-protein
MTTININAVNKIFTTGGADVIALKDINLEIASGEFICLLGPSGCGKSTLLNAIAGFSQPTSGQILAGGKLITEPGPDRGMVFQEYALFPWMTIESNIAFGLEIAGKTPAEIKERVDMLLSMLGLTEFRARYPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLKIWKVFGTTIVFVTHSIEESVYLADRTIVMTYRPGTIKRDVAIDLPRPRDPSAPEFNHLKRMLGEMVMEEQQRHHNAETMASTAD
>NZ_CP041185.1|WP_096234589.1|6016229_6017051_-|ABC-transporter-permease
MNIQMMKRFAHGAIVPVVVLLFWQALSTFGWINPQILPSPVAVVVKWYEYLIPMQAYTPEAGNYLVWMFSGELPHDAWASLSRVLGGFAIGAGLALPLGLLMGTNKTIYKLFDPLVQVLRPIPPIAYIPLAILWFGLGNPPAFFLISIGSFFPVLMNTIAGVRQVDGIYIRAARNLGASQMTMFRRVILPAATPYILAGARIGMGTAFIVVIVAEMIAVNSGLGFRILEAREYFWSDKIIAGMFTIGLFGLAIDMAMNALNNHLLQWHRGLEH

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041185_4	4.1\|6001107\|30\|NZ_CP041185\|CRISPRCasFinder	6001107-6001136	30	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	1502876-1502905	7	0.767
NZ_CP041185_4	4.1\|6001107\|30\|NZ_CP041185\|CRISPRCasFinder	6001107-6001136	30	MN694557	Marine virus AFVG_250M634, complete genome	40661-40690	7	0.767
NZ_CP041185_4	4.1\|6001107\|30\|NZ_CP041185\|CRISPRCasFinder	6001107-6001136	30	NZ_CP015270	Mycobacterium chimaera strain ZUERICH-2 plasmid unnamed 3, complete sequence	12066-12095	8	0.733
NZ_CP041185_4	4.1\|6001107\|30\|NZ_CP041185\|CRISPRCasFinder	6001107-6001136	30	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	958782-958811	8	0.733
NZ_CP041185_4	4.1\|6001107\|30\|NZ_CP041185\|CRISPRCasFinder	6001107-6001136	30	MH617644	Microviridae sp. isolate ctcd827, complete genome	4280-4309	8	0.733
NZ_CP041185_4	4.1\|6001107\|30\|NZ_CP041185\|CRISPRCasFinder	6001107-6001136	30	NZ_AP020328	Mycobacterium avium subsp. hominissuis strain JP-H-1 plasmid p2-JPH1, complete sequence	21215-21244	8	0.733
NZ_CP041185_4	4.1\|6001107\|30\|NZ_CP041185\|CRISPRCasFinder	6001107-6001136	30	NZ_CP022224	Mycobacterium chimaera strain SJ42 plasmid unnamed1, complete sequence	20334-20363	8	0.733
NZ_CP041185_4	4.1\|6001107\|30\|NZ_CP041185\|CRISPRCasFinder	6001107-6001136	30	KC292028	Halovirus HCTV-2, complete genome	20962-20991	9	0.7
NZ_CP041185_4	4.1\|6001107\|30\|NZ_CP041185\|CRISPRCasFinder	6001107-6001136	30	NZ_CP024312	Rhizobium sp. NXC24 plasmid pRspNXC24a, complete sequence	85116-85145	9	0.7

1. spacer 4.1|6001107|30|NZ_CP041185|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 7, identity: 0.767

ggtggcggcacgaccacgacgacttcttca	CRISPR spacer
ggtggcggctcgaccacgacgcctcgggcg	Protospacer
********* *********** **.   *.

2. spacer 4.1|6001107|30|NZ_CP041185|CRISPRCasFinder matches to MN694557 (Marine virus AFVG_250M634, complete genome) position: , mismatch: 7, identity: 0.767

ggtggcggcacgaccacgacgacttcttca	CRISPR spacer
ggtggcggcacaaccacgactacagggaca	Protospacer
***********.******** **     **

3. spacer 4.1|6001107|30|NZ_CP041185|CRISPRCasFinder matches to NZ_CP015270 (Mycobacterium chimaera strain ZUERICH-2 plasmid unnamed 3, complete sequence) position: , mismatch: 8, identity: 0.733

ggtggcggcacgaccacgacgacttcttca	CRISPR spacer
gacactggcacgaccacgacgagttcgtcg	Protospacer
*... .**************** *** **.

4. spacer 4.1|6001107|30|NZ_CP041185|CRISPRCasFinder matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ggtggcggcacgaccacgacgacttcttca	CRISPR spacer
ggtggcagcacgagcacgacgacgatcccg	Protospacer
******.****** *********  ...*.

5. spacer 4.1|6001107|30|NZ_CP041185|CRISPRCasFinder matches to MH617644 (Microviridae sp. isolate ctcd827, complete genome) position: , mismatch: 8, identity: 0.733

ggtggcggcacgaccacgacgacttcttca	CRISPR spacer
tgacttggtacgaccacgacgagttcttct	Protospacer
 *   .**.************* ******

6. spacer 4.1|6001107|30|NZ_CP041185|CRISPRCasFinder matches to NZ_AP020328 (Mycobacterium avium subsp. hominissuis strain JP-H-1 plasmid p2-JPH1, complete sequence) position: , mismatch: 8, identity: 0.733

ggtggcggcacgaccacgacgacttcttca	CRISPR spacer
gacactggcacgaccacgacgagttcgtcg	Protospacer
*... .**************** *** **.

7. spacer 4.1|6001107|30|NZ_CP041185|CRISPRCasFinder matches to NZ_CP022224 (Mycobacterium chimaera strain SJ42 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

ggtggcggcacgaccacgacgacttcttca	CRISPR spacer
gacactggcacgaccacgacgagttcgtcg	Protospacer
*... .**************** *** **.

8. spacer 4.1|6001107|30|NZ_CP041185|CRISPRCasFinder matches to KC292028 (Halovirus HCTV-2, complete genome) position: , mismatch: 9, identity: 0.7

ggtggcggcacgaccacgacgacttcttca	CRISPR spacer
tcgtccggcacgaccacgaggacttccacg	Protospacer
     ************** ******. *.

9. spacer 4.1|6001107|30|NZ_CP041185|CRISPRCasFinder matches to NZ_CP024312 (Rhizobium sp. NXC24 plasmid pRspNXC24a, complete sequence) position: , mismatch: 9, identity: 0.7

ggtggcggcacgaccacgacgacttcttca	CRISPR spacer
ggtgacggcacgaccacggcgaccgtgctc	Protospacer
****.*************.****. . ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

532311 : 542135

Aeromonas_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141168887.1\|532311_534339_+	DNA cytosine methyltransferase	A0A1I9KFD6	Aeromonas_phage	1.9e-125	41.9
WP_141168888.1\|534344_534920_-	hypothetical protein	NA	NA	NA	NA
WP_141168889.1\|534955_535384_+	hypothetical protein	NA	NA	NA	NA
WP_141168890.1\|535404_536058_-	hypothetical protein	NA	NA	NA	NA
WP_141172586.1\|536171_536585_+	recombinase	Q1MVP6	Enterobacteria_phage	9.3e-11	47.2
WP_141168891.1\|536581_539209_+	DNA methylase N-4	W6ATN1	Mycobacterium_phage	1.8e-296	59.1
WP_168208335.1\|539205_539613_+	hypothetical protein	NA	NA	NA	NA
WP_168208336.1\|539609_540566_+	DUF1376 domain-containing protein	A0A1P8DTG2	Proteus_phage	5.5e-22	53.1
WP_141168893.1\|540552_541401_+	ATP-binding protein	A0A059WFK9	Vibrio_phage	1.6e-57	48.7
WP_141168894.1\|541437_541791_+	hypothetical protein	NA	NA	NA	NA
WP_141172587.1\|541790_542135_+	DUF1064 domain-containing protein	Q3HQZ9	Burkholderia_phage	5.3e-44	74.5

DBSCAN-SWA_2

3671687 : 3680810

Escherichia_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141170907.1\|3671687_3672734_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.4e-82	48.5
WP_141170908.1\|3672766_3673660_+	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	9.2e-96	61.6
WP_141170909.1\|3673696_3674242_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	2.3e-49	53.6
WP_141170910.1\|3674290_3675175_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	4.4e-26	31.4
WP_141170911.1\|3675239_3676265_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	1.1e-79	45.8
WP_141172843.1\|3676418_3677099_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_141170912.1\|3677564_3677831_+	hypothetical protein	NA	NA	NA	NA
WP_141170913.1\|3678133_3678490_+	diacylglycerol kinase	NA	NA	NA	NA
WP_141170914.1\|3678878_3680810_-	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	1.5e-18	27.1

DBSCAN-SWA_3

5903768 : 5948778

Burkholderia_phage(34.38%)

tRNA,terminase,head,tail,transposase,plate,portal,capsid,integrase

attL 5905965:5906023|attR 5942618:5942676

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141172272.1\|5903768_5905814_+	EAL domain-containing protein	G3MA91	Bacillus_virus	2.0e-21	36.3
5905965:5906023	attL	NA	NA	NA	NA
WP_141172273.1\|5906151_5907210_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	5.6e-100	55.0
WP_046682344.1\|5907223_5907475_-	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	1.9e-11	45.3
WP_141172274.1\|5907467_5907665_-	hypothetical protein	NA	NA	NA	NA
WP_141172275.1\|5907661_5907850_-	hypothetical protein	NA	NA	NA	NA
WP_141172276.1\|5907900_5909682_-	replication endonuclease	A4JWW0	Burkholderia_virus	4.4e-89	42.1
WP_141172277.1\|5909681_5910107_-	hypothetical protein	NA	NA	NA	NA
WP_141172278.1\|5910106_5910325_-	hypothetical protein	NA	NA	NA	NA
WP_141172279.1\|5910426_5910831_-	hypothetical protein	NA	NA	NA	NA
WP_071079002.1\|5910952_5911216_-	ogr/Delta-like zinc finger family protein	A4JWR6	Burkholderia_virus	2.6e-14	45.7
WP_046682347.1\|5911212_5911401_-	hypothetical protein	E5E3T9	Burkholderia_phage	3.0e-09	58.6
WP_035820909.1\|5911438_5911642_-	hypothetical protein	E5E3U0	Burkholderia_phage	2.4e-12	61.0
WP_092612261.1\|5911652_5911856_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_141172280.1\|5911936_5912380_+	helix-turn-helix domain-containing protein	K4NXA8	Burkholderia_phage	1.4e-36	55.3
WP_141172281.1\|5912534_5913401_+	hypothetical protein	NA	NA	NA	NA
WP_141172282.1\|5913566_5915219_+	hypothetical protein	NA	NA	NA	NA
WP_141172283.1\|5915339_5916572_-	phage late control D family protein	K4PAY4	Burkholderia_phage	2.7e-82	48.6
WP_141172284.1\|5916568_5917177_-	oxidoreductase	A0A2H4JG54	uncultured_Caudovirales_phage	7.7e-38	59.1
WP_141172285.1\|5917192_5919988_-\|tail	phage tail protein	A4PE52	Ralstonia_virus	1.6e-231	50.9
WP_141172286.1\|5920063_5920177_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	4.6e-05	55.6
WP_058050288.1\|5920185_5920494_-\|tail	phage tail assembly protein	A4PE51	Ralstonia_virus	6.9e-19	52.1
WP_046682355.1\|5920533_5921043_-\|tail	phage major tail tube protein	E5E3U9	Burkholderia_phage	6.7e-51	56.2
WP_141172287.1\|5921110_5922286_-\|tail	phage tail sheath protein	E5FFG9	Burkholderia_phage	2.9e-150	68.3
WP_141172288.1\|5922322_5922853_-	hypothetical protein	NA	NA	NA	NA
WP_141172289.1\|5922852_5924520_-	hypothetical protein	A0A0M3ULH6	Salmonella_phage	9.8e-51	65.8
WP_141173000.1\|5924516_5925116_-\|tail	phage tail protein I	A0A2H4JAU2	uncultured_Caudovirales_phage	1.2e-64	60.9
WP_141172290.1\|5925129_5926041_-\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	4.5e-74	53.3
WP_141172291.1\|5926037_5926382_-	oxidoreductase	E5E3V5	Burkholderia_phage	3.6e-24	52.1
WP_141173001.1\|5926378_5926969_-\|plate	phage baseplate assembly protein V	A0A2H4JFJ8	uncultured_Caudovirales_phage	7.3e-33	45.6
WP_141172292.1\|5927117_5927612_-	hypothetical protein	NA	NA	NA	NA
WP_141172293.1\|5927598_5931681_-	RHS repeat protein	S5W9C6	Leptospira_phage	5.4e-10	33.3
WP_141172294.1\|5931816_5932284_-	phage virion morphogenesis protein	A0A2H4J927	uncultured_Caudovirales_phage	3.3e-36	53.6
WP_141172295.1\|5932280_5932769_-\|tail	phage tail protein	A0A2H4J906	uncultured_Caudovirales_phage	3.0e-32	50.0
WP_141172296.1\|5932752_5933265_-	lysozyme	NA	NA	NA	NA
WP_141172297.1\|5933261_5933822_-	hypothetical protein	G0YQI3	Erwinia_phage	2.1e-45	52.9
WP_035820867.1\|5933821_5934193_-	hypothetical protein	NA	NA	NA	NA
WP_141172298.1\|5934257_5934467_-\|tail	phage tail protein	D5LGY2	Escherichia_phage	2.0e-06	47.8
WP_141172299.1\|5934466_5934970_-\|head	head completion/stabilization protein	E5E3S2	Burkholderia_phage	1.3e-30	48.5
WP_141172300.1\|5935076_5935793_-\|integrase	integrase	A4PE31	Ralstonia_virus	2.9e-44	45.7
WP_141172301.1\|5935792_5936812_-\|capsid	phage major capsid protein, P2 family	E5E3W8	Burkholderia_phage	1.1e-116	63.5
WP_141172302.1\|5936861_5937665_-\|capsid	GPO family capsid scaffolding protein	E5FFI7	Burkholderia_phage	2.3e-58	50.0
WP_141172303.1\|5937801_5939601_+\|terminase	terminase ATPase subunit family protein	A4JWQ1	Burkholderia_virus	3.1e-236	66.8
WP_141172304.1\|5939516_5940662_+\|portal	phage portal protein	K4NZV0	Burkholderia_phage	1.4e-128	61.8
WP_070346144.1\|5940658_5940874_+	hypothetical protein	NA	NA	NA	NA
WP_141172305.1\|5941305_5942058_+	hypothetical protein	NA	NA	NA	NA
WP_141172306.1\|5942054_5942489_+	hypothetical protein	NA	NA	NA	NA
WP_141172307.1\|5942853_5943648_-	alpha/beta fold hydrolase	NA	NA	NA	NA
5942618:5942676	attR	NA	NA	NA	NA
WP_141169616.1\|5943742_5945000_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	2.5e-67	47.3
WP_141172308.1\|5945237_5945630_+	GFA family protein	NA	NA	NA	NA
WP_141172309.1\|5945807_5946191_-	c-type cytochrome	NA	NA	NA	NA
WP_141172310.1\|5946393_5946759_-	hypothetical protein	NA	NA	NA	NA
WP_141172311.1\|5947019_5947427_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_141172312.1\|5947457_5947928_+	hypothetical protein	NA	NA	NA	NA
WP_096234537.1\|5948022_5948220_+	DUF3079 domain-containing protein	NA	NA	NA	NA
WP_141172313.1\|5948283_5948778_+\|tRNA	prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041185

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection