CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041198	Pseudarthrobacter sp. NIBRBAC000502770 chromosome, complete genome	3 crisprs	csa3,cas3,DinG,WYL,DEDDh	1	0	4	0
NZ_CP041197	Pseudarthrobacter sp. NIBRBAC000502770 plasmid pMK-1, complete sequence	0 crisprs	csa3	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041198_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041198_1

966006-966121

Orphan

Consensus_repeat	Method
GCTCCGAAGCAGGAAGCGCCCAAGGC	CRISPRCasFinder

2 spacers

DinG

The CRISPR arrays of NZ_CP041198_1

>merge|NZ_CP041198|1|966006-966121|CRISPRCasFinder
GCTCCTGAGCAGGACGCTCCGAAGCAGGAAGCGCCCAAGGCCCAGGCTCCGAAGCAGGAGGCCCCCAAGGCTCCGGCTCCGAAGCAGGAAGCGCCGAAGGCTGCTGCACCCAAGGC

>NZ_CP041198|1|1|966006-966121|CRISPRCasFinder
GCTCCTGAGCAGGACGCTCCGAAGCA	GGAAGCGCCCAAGGCCCAG
GCTCCGAAGCAGGAGGCCCCCAAGGC	TCCGGCTCCGAAGCAGGAA
GCGCCGAAGGCTGCTGCACCCAAGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041198.1\|WP_141183324.1\|971708_972281_-\|SIMPL-domain-containing-protein	unknown	unknown	gnl\|CDD\|225516
NZ_CP041198.1\|WP_009358635.1\|966424_966619_+\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676
NZ_CP041198.1\|WP_141181189.1\|967196_968120_+\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223640
NZ_CP041198.1\|WP_168223112.1\|961200_961359_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041198.1\|WP_141181184.1\|955029_957087_+\|DEAD/DEAH-box-helicase	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|224120
NZ_CP041198.1\|WP_141183323.1\|970494_971613_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|275263
NZ_CP041198.1\|WP_141181185.1\|958638_959757_+\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235115
NZ_CP041198.1\|WP_141160955.1\|957134_957869_-\|transcriptional-repressor-LexA	unknown	unknown	gnl\|CDD\|234688
NZ_CP041198.1\|WP_141181187.1\|962210_963095_+\|SseB-family-protein	unknown	unknown	gnl\|CDD\|377787
NZ_CP041198.1\|WP_141181186.1\|960441_961200_+\|imidazole-glycerol-phosphate-synthase-subunit-HisH	unknown	unknown	gnl\|CDD\|237290
NZ_CP041198.1\|WP_141160945.1\|968185_968461_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|182475
NZ_CP041198.1\|WP_141160941.1\|972364_972817_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041198.1\|WP_141181190.1\|968639_969848_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP041198.1\|WP_141181188.1\|964538_964925_-\|DUF1844-domain-containing-protein	unknown	unknown	unknown
NZ_CP041198.1\|WP_141160952.1\|959818_960445_+\|imidazoleglycerol-phosphate-dehydratase-HisB	unknown	unknown	gnl\|CDD\|234873
NZ_CP041198.1\|WP_141160954.1\|958226_958577_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|184523
NZ_CP041198.1\|WP_141181191.1\|970009_970498_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|239517
NZ_CP041198.1\|WP_141160940.1\|973017_974079_+\|phenylalanine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|234780
NZ_CP041198.1\|WP_018763610.1\|966737_967127_+\|50S-ribosomal-protein-L20	unknown	unknown	gnl\|CDD\|179959
NZ_CP041198.1\|WP_141160948.1\|963153_964470_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883

Protein	Function_ID	Function_description	E-value
NZ_CP041198.1\|WP_141183324.1\|971708_972281_-\|SIMPL-domain-containing-protein	gnl\|CDD\|225516	COG2968, COG2968, Uncharacterized conserved protein [Function unknown].	4.93887e-23
NZ_CP041198.1\|WP_009358635.1\|966424_966619_+\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	1.51228e-21
NZ_CP041198.1\|WP_141181189.1\|967196_968120_+\|RNA-methyltransferase	gnl\|CDD\|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	5.18208e-59
NZ_CP041198.1\|WP_141181184.1\|955029_957087_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|224120	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair].	1.56052e-129
NZ_CP041198.1\|WP_141183323.1\|970494_971613_-\|radical-SAM-protein	gnl\|CDD\|275263	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B. Members of this family are the downstream member (B) of a pair of tandem-encoded radical SAM enzymes. Most of these radical SAM gene pairs have an additional upstream regulatory gene in the MarR family. Examples of high sequence identity (over 96 percent) from cassettes in several Treponema species of the oral cavity to those in multiple Firmicutes in the gut microbiome suggest recent lateral gene transfer, as might be expected for antibiotic resistance genes. The function is unknown.	2.45781e-16
NZ_CP041198.1\|WP_141181185.1\|958638_959757_+\|histidinol-phosphate-transaminase	gnl\|CDD\|235115	PRK03317, PRK03317, histidinol-phosphate aminotransferase; Provisional.	0
NZ_CP041198.1\|WP_141160955.1\|957134_957869_-\|transcriptional-repressor-LexA	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	1.47001e-106
NZ_CP041198.1\|WP_141181187.1\|962210_963095_+\|SseB-family-protein	gnl\|CDD\|377787	pfam07179, SseB, SseB protein N-terminal domain. This family consists of several SseB proteins which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon. This entry contains the presumed N-terminal domain of SseB.	5.12203e-26
NZ_CP041198.1\|WP_141181186.1\|960441_961200_+\|imidazole-glycerol-phosphate-synthase-subunit-HisH	gnl\|CDD\|237290	PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional.	1.15174e-108
NZ_CP041198.1\|WP_141160945.1\|968185_968461_-\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|182475	PRK10457, PRK10457, hypothetical protein; Provisional.	5.75435e-12
NZ_CP041198.1\|WP_141181190.1\|968639_969848_-\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	5.72753e-88
NZ_CP041198.1\|WP_018763610.1\|966737_967127_+\|50S-ribosomal-protein-L20	gnl\|CDD\|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	3.36583e-56
NZ_CP041198.1\|WP_141160952.1\|959818_960445_+\|imidazoleglycerol-phosphate-dehydratase-HisB	gnl\|CDD\|234873	PRK00951, hisB, imidazoleglycerol-phosphate dehydratase HisB.	4.68929e-116
NZ_CP041198.1\|WP_141160954.1\|958226_958577_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|184523	PRK14125, PRK14125, cell division suppressor protein YneA; Provisional.	5.10883e-07
NZ_CP041198.1\|WP_141181191.1\|970009_970498_+\|NUDIX-domain-containing-protein	gnl\|CDD\|239517	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.	1.65442e-40
NZ_CP041198.1\|WP_141160940.1\|973017_974079_+\|phenylalanine--tRNA-ligase-subunit-alpha	gnl\|CDD\|234780	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated.	0
NZ_CP041198.1\|WP_141160948.1\|963153_964470_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.87273e-12

>NZ_CP041198.1|WP_141181188.1|964538_964925_-|DUF1844-domain-containing-protein
MSTPDSNSYVFEPGDAGADVSQQIRDISEVPAIEVITTAAVHLMSAAAVKLGLAEEDNAAELKDLDEARKLITALAGLVTAAAPEIGSQHAGPLRDGLRSLQLAFREESLIPDAPGKGPGEKYTGAVN
>NZ_CP041198.1|WP_141160948.1|963153_964470_+|MFS-transporter
MNFALYRELLAVRPIRRLLLVGMVARIPHSAAGVLLTLHIVLTLGQGYAAAGAAAAVMTIGIALGAPWRGRRVDTAGLRTALIPSVISETVIWSVVPHVSYQWLLPLVFVGGLLTLPIFSVVRQSLGVLAEGEQRRTAFALDAITTEVVFMIGPAAGAVVATSGFTTAGLTVVGVSTSLAGLFLMWFNPPTRSEGLSLECAADEQHAAEAAVVSTAPGHVQEAAAELAPAGAATSAAQGLRGRLAGGFSWFTATVAALFAVAAGAGMVLSGTDVGIVAALEIDGHQSEIGIVFVFWCAASVVGGLVYGAMHRPIPPIFLLLGMAALTLPMAFAHDTWTLAFVSVLPGLLCAPVLSAASEKVAELVPEERRGEAMGWYGSALTAGVAFGSPLAGVFIDVMGPSGGFVSVGAAGVVLCVVGLALQQRRRRPAPGSPGQPL
>NZ_CP041198.1|WP_141181187.1|962210_963095_+|SseB-family-protein
MPSSEEPVSPPARQLPGHIAAALAGAGGATDSAGQPWAGRSLAGDDAKIHNFEDDDGTADAGYLTAIAALREGRGDEADVVAALATARVFIPIVAQLAEEAGTAHGLHADKQADMALVTLKAADGRTALPAFTSAAALAAWHPDARPVAVYAARAALSAVAEGAELLVLDPGADVTFVVRRPGVWALAKQHAWTPSYSDRALAAEMGNAAAGFAAVRGVELLPGRGVVARAADGSLLPGGGTGPELQVVLYLEDGLDAAGVQDLVAGLQAEWSRNVLFGERVDSLEIKLRRAPD
>NZ_CP041198.1|WP_168223112.1|961200_961359_+|hypothetical-protein
MWSVLLMGLAGLLIGGGISFRQQARPLWLQVSFYALAAMSLVAAYLLTLPGN
>NZ_CP041198.1|WP_141181186.1|960441_961200_+|imidazole-glycerol-phosphate-synthase-subunit-HisH
MSGPELKDGAIIDPSASRRLPSPEGKPTVTVLDYGSGNVRSAVRALERAGAEVILSAKPEDVLNADGLVVPGVGAFETVMRELKAVDGIRLIGRRVAGGRPVLGICVGLQVLFEAGVEHGTEAQGIGEWPGKVEALPAEVVPHMGWNTVKVPEGSKLFAGVENERFYFVHSYGVQEWNFDVIQPRMAPPLVTWSEHGGPFIAAVENGPLCATQFHPEKSGDAGARLLRNWVEGLRRPAGADSGGPASAGSGA
>NZ_CP041198.1|WP_141160952.1|959818_960445_+|imidazoleglycerol-phosphate-dehydratase-HisB
MSSTGSNTAAARTARMERATSESSVLVEINLDGTGVSDIDTSVPFYDHMLTALCKHSLIDMTVKATGDTHIDVHHTVEDVAITFGEVLRTALGNKAGIRRFGEATVPLDEALANAVVDVSGRPYLVHGGEPAGQEYHLIGGHFTGSLTRHVFEAITLHAGICLHMNVLAGRDPHHIVEAQFKAFARALRAAVEPDPRVEGIPSTKGAL
>NZ_CP041198.1|WP_141181185.1|958638_959757_+|histidinol-phosphate-transaminase
MNQQLERLNRLPLRSNLRGLTPYGAPQLNVPILLNVNENTHGVPADVRAAISAAVTEAAAGLNRYPDREFTALRKALAEYLGHGLDETNLWAANGSNEVLQQILQAFGGPGRTALGFPPTYSMYPLLASGTDTQYITGERAEGYDLSAESAARQVKELQPNIVFLCSPNNPTGTGLGLDVVEAVYDAGADSQAIVIVDEAYHEFAHDGTPSALTLLPGRERLIVSRTMSKAFALAGARLGYMAAAPEVADALRLVRLPYHLSAITQATALAALEHREALMADVEDIKKQRDRIVAELTRMGLKPAASDSNYVFFGGLENPHQVWQELLDAGVLIRDVGIPGHLRVTAGTEAETTAFLTSLERILAGHAALHA
>NZ_CP041198.1|WP_141160954.1|958226_958577_+|LysM-peptidoglycan-binding-domain-containing-protein
MSALTLHQVSPSPAPLRLTRRGRIVLIGVPLVVLAVLLLSLAGFFHSPAKASDSVADLAVTPTVTVTVQPGQSLWAIAGTVAPGRDARDVVADIVQLNNLDAGTVLPGQQLFVPTH
>NZ_CP041198.1|WP_141160955.1|957134_957869_-|transcriptional-repressor-LexA
MAAAAAGGRTAPQSKRTTKGLTPRQKKILETIQRSVNENGYPPSMREIGDTVGLASLSSVTHQLSQLEKLGYLRRDPKRPRAMEVLMPLTLDGGGKSAGTSRAPQAAGDSATVTELPTALDTAMVPLVGRIAAGGPILAEQLVEDVMPLPRQLVGQGELFMLKVAGDSMVDAAICDGDWVVVRRQADAANGDIVAALLDDEATVKTFRQRDGHTWLLPQNTQYEPILGDHATIMGKVVSVLRSL
>NZ_CP041198.1|WP_141181184.1|955029_957087_+|DEAD/DEAH-box-helicase
MTDLAAGEAAQTAGEQFVIELLDRAVAGMGGQSRTGQHEMARQVARAIETGNHLLVQAGTGTGKSLAYLIPLIAHALESNKPALVSTATLALQTQIVGRDLPRLLKNITPALDRPVKVALVKGRSNYVCRHKLEGGFPSEEPSEGQLFSLGEDTSVPHFAASVGGPSSQLGKEVVRLREWAEKTATGDRDELLPGVTDRAWRQVSVTSMECLGAQKCPMAAECFSELARQDAAEADVVVTNHAMLAVSAFEGLAVLPEYDVVVVDEAHELQDRVTGAVSGQLSVAMVHAAASGARKHTAITVDALNAAAANLEMALAGAPNGLLPNGLNDEQLDCVDQLREACRAALSDSKGDSNTTADGGRQLARSRLMLILELCERLIAARENREVVWFSRASTFDPDQGYSQPDDSAPVLINIAPLSVAGRLREGLFAGHTVVLTSATLAIGSAFEPAAGGLGLIGDGAPSWTGVDVGSPFDYPKQGILYVAGHLPKPGRGVSPEALAELEALIKASNGGALCLFSSRRAAGEAADALRPKLDMTVLCQGESTMTALVKQFADEPDTCLFGTMSLWQGVDVPGGSCRLVVIDRIPFPRPDDPLMTARSRAVAQAGGNGFMSVSATHAAIRLAQGAGRLIRSTGDKGVVAVLDSRLATERYAGFLRGALPPFWATTDRAKALAALTRLGADAS
>NZ_CP041198.1|WP_009358635.1|966424_966619_+|50S-ribosomal-protein-L35
MPKMKTHSGAKKRFKLTGSGKLRRQQANRRHYLEHKSSRLTRRLAGDKIVFKGDAKVIRKMLGI
>NZ_CP041198.1|WP_018763610.1|966737_967127_+|50S-ribosomal-protein-L20
MARVKRAVNAHKKRRVVLERAKGYRGQRSRLYRKAKEQLLHSFVYSYGDRKKKKGDFRRLWIQRINAASRANGLTYNRLIQGLKAAEVEVDRRMLAELAVSDANAFAALVQVAKDSLPADTSAKKVAAA
>NZ_CP041198.1|WP_141181189.1|967196_968120_+|RNA-methyltransferase
MNESGRPQDLPLSNPRADRVRDVAKLAGRPARLKRGQFLAEGPQAVREALKLHQQRLAAGAPGVVTEVFASESCLDRFPEFEELAEGTNARLATDEVLAAMADTVNPQGIVAVCRFVDVALADVLDAGPRLIAVLCQVRDPGNAGTVLRAADSAGADAVIFTASSVDIYNPKAVRSTAGSLFHLPVVLAADPAELAAACKARGIGVLAADGYGQLDLDVLQDENARRRLTGAGPGSDYDLAAPTAWFFGNEAQGLSEAELELADHRVAVPVYGAAESLNLGTAATVCLYASARSQRRPAPLAQDHNG
>NZ_CP041198.1|WP_141160945.1|968185_968461_-|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MGFLAWIILGLIVGAIVKAVMPGRVGGGWVTSLILGVVGAIVGGWIGSLLFNKGDLAFFDLGTWILAIVGGLVVAGIYGAVTGRGKATRAP
>NZ_CP041198.1|WP_141181190.1|968639_969848_-|MFS-transporter
MSSVLSPSTAARTTTPRVGMAIFALAMGGVGIGVTEFTMMGLLKEVEQGLGISTPEAGHLISAYALGVVVGAPLLAAVGAKLPRKSLALGLLLFFTVANLTSFMAPDYGSMLVSRFAAGLPHGAFFGVAAVIAASLVPPTRRGWAISMVMAGLSVSNVVGVPFATWLGQTFGWRLLFVLVGAIGLVALLMVWKFVPFQAAHPDASIRRELGALKRLQVWLALLVGIVGFGGFFATYTYIAHTMTAVAGIPPGLLPLVVALYGLGMVAGNIVGGRLADKSVMGTLHRVLPAIAVALVVYAVAAHWPWSAMVMVFVVGASGSMLIPALQTRLLDASPDAPSLASSLNHAALNVANALGAFLGGLVIALGWGFVAPALVGAVLAVLGFGVALLSGLLERKRPLAA
>NZ_CP041198.1|WP_141181191.1|970009_970498_+|NUDIX-domain-containing-protein
MTGLIQVVGGAVVDTLANPGALLVARRSAPEHLAGLWEFPGGKVEPGEAPEAALVRELAEELGIGVRLGAELPAETPAGWRLNDRASMRVWFAEVASGEPAPLEDHDELRWIRLEDHAAVLGLPWIPADYPIVHALLDSVSALVPQSPVEDRPAGGANAKTG
>NZ_CP041198.1|WP_141183323.1|970494_971613_-|radical-SAM-protein
MRWEAQALVPTPDAAGGPGPALLPLAGLVRSVTTPEFAGITFHEVTAKSVLNRVPAGSKMPFEWTVNPYRGCSHACVYCFARKSHTYLDFDAGMDFDSQVVVKVNAAEVLRKELNKASWTRQQVALGTNTDPYQRAEGRYRLMPGIINALAESGTPLSILTKGTLLARDIPLLKRAAAQVPVGLGISLAMTDEALSEAIEPGTPGPRARLKLVSRLREAGLPCGVMAMPILPWLSDSDEALDALFASLAAAGATGVTAGALYLKPGTREWFMKWIAANHPELAGRYRRLYGTGSYASKEYRTWLAGKVRYFKARYGFTHSSGFSHRDLDDPRAEEAAYPAGSIPTAVPGGPLAGSPAMTSSVSGTAVQDSLF
>NZ_CP041198.1|WP_141183324.1|971708_972281_-|SIMPL-domain-containing-protein
MLVSIGVECRAESVVEAYAAAGKDLAAVGSALRSRGVGPDDIRSAGLAVRADLAWRDGEGQRLVGYIASSSLAVRLRDPGSAAATVSAAVHTAGDNVRLNSLQLVLSDDSGVRAQARDAAWQDALSSAAQYAALASAGLGSVLSVTDQRPAPGPVPLAGLQRASATEGPQVELGLNRVEAAVTVTWELLP
>NZ_CP041198.1|WP_141160941.1|972364_972817_-|hypothetical-protein
MTLRQHAGSVNGPTTAQRLRRAANLLNGSTLAGLAVALAARTHIRHGPRGLIIAAGYRWRLPFAGAYTLGNVVLCRGTAEDLLSRPALLGHEERHCSQYAWCLGLPFIPLYLVAAGWSVLRTGNPGTANIFERRAGLAAGGYPLRAARHP
>NZ_CP041198.1|WP_141160940.1|973017_974079_+|phenylalanine--tRNA-ligase-subunit-alpha
MTETLPGAAIPNPTDEAAINAAVDQAITAIAGAATLDELKAVRLAHSGEKSPLSLANREIGRLPKDQKALAGKLMGASRGRVNKALAERAEVLEAENDARILVEETVDVTAAPRRRRAGARHPLSTLQDRVADIFVGMGWEIAEGPEVESEWFNFDALNFKPDHPAREMQDTFFVEPPEAHLLMRTHTSPVQVRSMLEREVPIYVLCPGKVFRTDELDATHTPVFHQFEGLAIDKGLSMADLLGTLEHFTRQMFGEEAKVRLRPNYFPFTEPSAELDIFHPGAKGGPRWIEWGGCGMVNPNVLRAAGIDPDVYSGFAFGMGIERALMFRNEVADMHDMIEGDVRFSEHFGMEI

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Crispr_ID: NZ_CP041198_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041198_2

1007325-1007425

Orphan

Consensus_repeat	Method
CGTCCGCGTCGCGAGGGTGAGGGTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041198_2

>merge|NZ_CP041198|2|1007325-1007425|CRISPRCasFinder
CGTCCGCGTCGCGAGGGTGAGGGTGACCGCCGTGGTTTTGGTGGCGGTGATCGTGACCGTAAGCCGTTTGGTGACCGTCCGCGTCGCGATGGTGAGGGTGA

>NZ_CP041198|2|2|1007325-1007425|CRISPRCasFinder
CGTCCGCGTCGCGAGGGTGAGGGTGA	CCGCCGTGGTTTTGGTGGCGGTGATCGTGACCGTAAGCCGTTTGGTGAC
CGTCCGCGTCGCGATGGTGAGGGTGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041198.1\|WP_141181199.1\|992723_993272_+\|pyridoxamine-5'-phosphate-oxidase	unknown	unknown	gnl\|CDD\|273138
NZ_CP041198.1\|WP_141181200.1\|993293_994031_+\|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme	unknown	unknown	gnl\|CDD\|236578
NZ_CP041198.1\|WP_141160916.1\|1017084_1017591_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|239519
NZ_CP041198.1\|WP_141181209.1\|1009897_1010713_+\|TlyA-family-rRNA-(cytidine-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|224110
NZ_CP041198.1\|WP_141160932.1\|989442_989973_+\|arginine-repressor	unknown	unknown	gnl\|CDD\|235116
NZ_CP041198.1\|WP_141181203.1\|996142_996823_+\|DNA-3-methyladenine-glycosylase	unknown	unknown	gnl\|CDD\|376746
NZ_CP041198.1\|WP_141161620.1\|1016095_1017022_+\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|234713
NZ_CP041198.1\|WP_141181201.1\|994043_994538_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|223427
NZ_CP041198.1\|WP_141181198.1\|991229_992657_+\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
NZ_CP041198.1\|WP_141160915.1\|1017653_1018793_-\|bifunctional-2-methylcitrate-synthase/citrate-synthase	unknown	unknown	gnl\|CDD\|237590
NZ_CP041198.1\|WP_141181202.1\|994534_996013_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225080
NZ_CP041198.1\|WP_018771557.1\|990018_991224_+\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|234785
NZ_CP041198.1\|WP_141181210.1\|1011756_1013496_+\|DNA-repair-protein-RecN	unknown	unknown	gnl\|CDD\|223571
NZ_CP041198.1\|WP_141160919.1\|1010726_1011752_+\|NAD-kinase	unknown	unknown	gnl\|CDD\|235121
NZ_CP041198.1\|WP_141181207.1\|1008647_1009637_+\|HAD-IIA-family-hydrolase	unknown	unknown	gnl\|CDD\|319832
NZ_CP041198.1\|WP_141160918.1\|1013524_1015300_+\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
NZ_CP041198.1\|WP_141181208.1\|1009646_1009898_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041198.1\|WP_141160917.1\|1015325_1015985_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|239516
NZ_CP041198.1\|WP_141181205.1\|999137_1000451_+\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NZ_CP041198.1\|WP_141181204.1\|996874_999103_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226482

Protein	Function_ID	Function_description	E-value
NZ_CP041198.1\|WP_141181199.1\|992723_993272_+\|pyridoxamine-5'-phosphate-oxidase	gnl\|CDD\|273138	TIGR00558, Pyridoxine/pyridoxamine_5'-phosphate_oxidase, pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from Pfam but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine].	6.105e-38
NZ_CP041198.1\|WP_141181200.1\|993293_994031_+\|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme	gnl\|CDD\|236578	PRK09583, PRK09583, mycothiol-dependent maleylpyruvate isomerase; Reviewed.	8.54825e-26
NZ_CP041198.1\|WP_141160916.1\|1017084_1017591_+\|NUDIX-domain-containing-protein	gnl\|CDD\|239519	cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a much deeper and narrower substrate binding pocket. Mechanistically, MTH1 contains dual specificity for nucleotides that contain 2-OH-adenine bases and those that contain 8-oxo-guanine bases.	5.34135e-42
NZ_CP041198.1\|WP_141181209.1\|1009897_1010713_+\|TlyA-family-rRNA-(cytidine-2'-O)-methyltransferase	gnl\|CDD\|224110	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis].	3.15861e-93
NZ_CP041198.1\|WP_141160932.1\|989442_989973_+\|arginine-repressor	gnl\|CDD\|235116	PRK03341, PRK03341, arginine repressor; Provisional.	2.12811e-82
NZ_CP041198.1\|WP_141181203.1\|996142_996823_+\|DNA-3-methyladenine-glycosylase	gnl\|CDD\|376746	pfam02245, Pur_DNA_glyco, Methylpurine-DNA glycosylase (MPG). Methylpurine-DNA glycosylase is a base excision-repair protein. It is responsible for the hydrolysis of the deoxyribose N-glycosidic bond, excising 3-methyladenine and 3-methylguanine from damaged DNA.	8.43103e-87
NZ_CP041198.1\|WP_141161620.1\|1016095_1017022_+\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|234713	PRK00283, xerD, tyrosine recombinase.	1.42852e-139
NZ_CP041198.1\|WP_141181201.1\|994043_994538_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|223427	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	4.36062e-33
NZ_CP041198.1\|WP_141181198.1\|991229_992657_+\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NZ_CP041198.1\|WP_141181202.1\|994534_996013_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225080	COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism].	1.20384e-53
NZ_CP041198.1\|WP_018771557.1\|990018_991224_+\|argininosuccinate-synthase	gnl\|CDD\|234785	PRK00509, PRK00509, argininosuccinate synthase; Provisional.	0
NZ_CP041198.1\|WP_141181210.1\|1011756_1013496_+\|DNA-repair-protein-RecN	gnl\|CDD\|223571	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair].	1.91566e-177
NZ_CP041198.1\|WP_141160919.1\|1010726_1011752_+\|NAD-kinase	gnl\|CDD\|235121	PRK03372, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional.	1.11173e-179
NZ_CP041198.1\|WP_141181207.1\|1008647_1009637_+\|HAD-IIA-family-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	9.24023e-89
NZ_CP041198.1\|WP_141160918.1\|1013524_1015300_+\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP041198.1\|WP_141160915.1\|1017653_1018793_-\|bifunctional-2-methylcitrate-synthase/citrate-synthase	gnl\|CDD\|237590	PRK14033, PRK14033, bifunctional 2-methylcitrate synthase/citrate synthase.	0
NZ_CP041198.1\|WP_141160917.1\|1015325_1015985_+\|NUDIX-domain-containing-protein	gnl\|CDD\|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	4.42474e-45
NZ_CP041198.1\|WP_141181205.1\|999137_1000451_+\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NZ_CP041198.1\|WP_141181204.1\|996874_999103_+\|AAA-family-ATPase	gnl\|CDD\|226482	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only].	1.12135e-78

>NZ_CP041198.1|WP_141181205.1|999137_1000451_+|tyrosine--tRNA-ligase
MPELNNLEPQRNDPTFANIWQELKWRGLVHVSTDEAELEKLLANGPVTYYCGFDPTAPSLHLGNLVQLLVMRRLQLAGHRPLGLVGGSTGMIGDPRPTAERTLNTKDTVAEWVGYLQAQVQRFLSFDGDNAARMVNNLDWTAPLSAIDFLREVGKHFRVGTMLRKDAVASRLNSDEGISYTEFSYQILQGMDYLQLYRDYGCVLQTGGSDQWGNLTSGTELIRKVEGKSVHALGTPLITNSDGTKFGKSEGNAIWLDAGMCSPYAFYQFWLNTADADVVDRLKVFTFLTRAEIEKIAVSVAERPFAREGQRKLAFEVTSLVHGVDATEKVIAASAALFGNGDLAALDKATLQAATSELPSTTVQVDEMGIVDLLVASGLSESRSAARRTVGEGGAYVNNEKVSDPEAVIAESELLHGQYLLLRRGKKNLATVEVLVP
>NZ_CP041198.1|WP_141181204.1|996874_999103_+|AAA-family-ATPase
MHDAELAHEREYVAGLYARLEELREEKRGQLAQVRRAGAVGTMQNVSERDAFAALYEDRLAQLDAVDDRLVFGRLDLDSGEAQYIGRIGLTTEDLQRLMVDWRAPEAGHFYQATAFDRQGVRRRRHLILQGREVKAIEDDVLDAGMLTDDESLQGEGALLAALNSKRTGRMSDIVSTIQSEQDRIIRSSISGAVVVQGGPGTGKTAVALHRAAYLLYTHRDRLKSAGVLLVGPSSSFMKYIERVLPSLGETGVVMASLGRLMPGIHAVPETDAGVAAIKGRLDMATIVANAVSNRMRVPAQNRILEVDGRKLTLTPRQVRRARERARATGKPYNEARVTFVKILLRELTEQMTELVEAGNIGNNADRSYLAEDVRTARDVRIALNLCWMPMTPEKLISDLFSKPEILEFCTPHLTPAERALLQRPADAPWTESDVPLLDEAAELLGELDPAAGRGLAQQEHDRARDLANAKQTLVNMEAAGVDPLMSAEELAEQNREQEARQTAAERATSDRTWAFGHIVVDEAQELSPMQWRLLVRRCPLKSFTIVGDIAQTSSVAGANSWQGALAPMFGDRWQLEELTVNYRTPSQIAEAAVRMANAAGLVVSAPKAVREGRWDPIIDEVSAGAVVERLVEVLPEELAALDGGLLAVIADGDLLPQASAALREVYGRRIGSGAGSYEQDIVVISPREAKGLEFDGVVVLEPSVMLNHEHGKVGDLYVAMTRATQRLRLIASQPVPAGIAG
>NZ_CP041198.1|WP_141181203.1|996142_996823_+|DNA-3-methyladenine-glycosylase
MNHSTGAREHLRDFLSADARELAPQLLGALLTHESRDGSVSIRLTEVEAYMGPEDSLHPDPGSHTYRGPTPRNAPMFGPPGHLYVYFTYGMHHCTNIVCGPAGVASALLLRAGEVVDGLALARRRRPTSKTPADLASGPARLAKALGLTTADSGRDALAPPFRLELPSVPAGAVSSGPRVGVAGAGGTEEYAWRFWLTGDPTVSKYKAAKPRNRNTAGAPPGFHQR
>NZ_CP041198.1|WP_141181202.1|994534_996013_-|helix-turn-helix-domain-containing-protein
MDFWQRYRAIDARDTRFDGQFFTAVRTTGIYCRPSCPARTPKASNVTFYETSAAAHEAGYRACKRCLPEAVPGTPAWNVRQDIAGRAMRLISDGVVNRDGVAGLAARLGYSPRQLNRILGQELGAGPLALARAARAQTARTLLVSTSIKLADVAFAAGFSSVRQFNETIAEVFDMTPTALRKTVRHPVIGAGAAALILDLPYRPPFDPGIFSFLAVRAIPGIEEGTSTSYARTLRLPHGDARFRVEYDGGARERPLTLTIGAVDLRDLPALLSRVRRLFDLDADPEAIDGTLAADARLAGSVAGVRGMRLPGAVDPQELLVRAMVGQQITVAAARTALTQLSAAGSPTSAPGDGLDRLFPTPAEIAAAGHLLRGPRRRTESLLHAASAMAGGRLEFGYGDDVPSLTAALLPLPGVGPWTVGYAAMRVLGAPDIFLANDAAVRNGIRALDNGTSALSLDFREASPWRSYATMHLWRAAARPAAPTTIPAKGTP
>NZ_CP041198.1|WP_141181201.1|994043_994538_-|methylated-DNA--[protein]-cysteine-S-methyltransferase
MKAQLVQLSTPDGPFTVLARDGVVLASGWTAGMAELTGQVHPTLRPDAVEEVTDLGGISSAVEAFYAGDPAPAMAVPVRQQSGPFRAHAWDVLRQVKPGSPVTYTEYAALAGNPRAVRAAASACAFNAAALFVPCHRVIRTDGSLGGFRWGLRIKESLLAREAA
>NZ_CP041198.1|WP_141181200.1|993293_994031_+|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme
MTSPSPAALPAELHKAADALTAAVDRIPAGGEKAPSTLPGWSRGHLLAHVAGICNALARQVEYGRRGETVELYDGGVDGRNRAIELAAGHSLEDHREDVAAAVQRALAAFDALGEDEWQTRIAFRDGVIFDAGLALWRELVIHTADLDTGSGPETWNRAFCSHLFDFLAARVPAETRLVLQPMALPPLTLGTGGSTVVVSGMVTDIAAWLAGREPSLDSLRATAAGDGTDLPGLLPWPSAMPDPK
>NZ_CP041198.1|WP_141181199.1|992723_993272_+|pyridoxamine-5'-phosphate-oxidase
MSETFRKFLRTLPDFPSDLPGFDPASAPQDPALLFKQWLDEALDAGEHQPHAFSLATVGAGAGGAPQPSSRMLILKNIDDDGWHFATSRTSRKGRELSESPRAAMNFYWAALGRQVRVVGAVTELSAEASAVDWHERPRADGSDNPDWQLYALQPAEIEFWQASNDRRHVRHRVGPDGSPLV
>NZ_CP041198.1|WP_141181198.1|991229_992657_+|argininosuccinate-lyase
MAEQKTEATNAGALWGGRFAGGPADALAALSKSTHFDWRLARYDIAGSKAHARVLHKAGLLDDAELEGMLAALTQLDEDVASGAYLPAESDEDVHGSLERGLIERAGAQLGGKLRAGRSRNDQVATLGRMFLRDHARIIARGVLATVDALVEQAKAHHGVAMPGRTHLQHAQPVLLSHHLLAHAWALLRDVQRLQDWDKRAGVSPYGSGALAGSSLGLDPEAVAADLGFFSATHNSIDGTASRDVFAEFAWVCSMIGVDLSRISEEVIFWATKEFSFVTLHDSYSTGSSIMPQKKNPDVAELARGKAGRLIGNLTGLLATLKGLPLAYNRDLQEDKEPVFDAADTLEVLLPAVSGMIATLTFNTERMESLAPQGFALATDIAEWLVRQGVPFREAHELSGAAVKQAESRGVELWDLSDEEYAAISEHLTPEVRTVLSTEGSLNSRNSQGGTAPAAVERQLAALEGELAGVREYAG
>NZ_CP041198.1|WP_018771557.1|990018_991224_+|argininosuccinate-synthase
MTERIVLAYSGGLDTSVAIGWIGEATGAEVIAVAVDVGQGGESLETIRQRALGCGAVEAYVADASDEFANEYCVPTLKANALYQGHYPLVSAISRPVIVKHLVKAAREFGATTVAHGCTGKGNDQVRFEVGIQTLGPDLKCIAPVRDLALTRDKAIAFAEEKGLPIETTKKNPYSIDQNVWGRAVETGYLEDIWNAPTKDIYDYTATPEFPPAPDEVIISFEAGVPVAIDGVKVTPLQAIKELNRRAGAQGVGRIDVVEDRLVGIKSREIYEAPGAMALITAHKHLEDITVEREQARFKATVGQRWAELVYDGQWFSPLKRSLDAFIEDTQKYVSGDIRMTLHGGQAIVNGRRSDTSLYDFSLATYDTGDTFDQSQAKGFIELWGMSAKVASGRDIRVAGK
>NZ_CP041198.1|WP_141160932.1|989442_989973_+|arginine-repressor
MSSQPSSPGTSPATKTARQARITAILTGQSVRSQAELAALLADDGVQVTQATLSRDLVELGAVRVRGKEGVLVYAVPGEGGERGARSGVTQEILDARLARLCSELLVTAEASANIAVLRTPPGAANFLALAIDHSVMPSILGTIAGDDTVLLVSRDPLGGPDLAARFLQLAEEAGQ
>NZ_CP041198.1|WP_141181207.1|1008647_1009637_+|HAD-IIA-family-hydrolase
MSDVSLVSRFDALLADLDGVVYAGPDAIPGAVESLQQLSGLGIGLGYVTNNASRSPADVAAHLRELGAPAEDNQVVSSSQAAAELLASMLAPGSRILITGSPALAREIELVGLVPVAGQDEDPVAVVQGFSPAIGWKDLAEATYVVNAGALWVATNTDMSIPQARGIAPGNGTLVAAVAAATGQQPRVAGKPEAPLFHSAAKRLGAERPLVVGDRLDTDILGGNNAGFATVAVLTGVDTRETILAARAAERPEYIIANLADLHRPYPDVTHDDGTYTCGQSTARVANGAVGIIGGQDNLDSWRAACAAWWAATPDAAAPQAPKLVWLDH
>NZ_CP041198.1|WP_141181208.1|1009646_1009898_+|hypothetical-protein
MTELTEPEDPTIQPAPEWPQADRQDLTDPQVAQSIARLLDLPGLPAADHESVYNLVHDDLLAALNSDPADVAFPGTGPDGGAA
>NZ_CP041198.1|WP_141181209.1|1009897_1010713_+|TlyA-family-rRNA-(cytidine-2'-O)-methyltransferase
MPVRLDQALVARGLARSRTHAASLIAEGKVSSGGQVLGKASLQVDESRNLAVEHDEQDTYASRAGHKLAGALDAFPGVSAQGKRCLDAGASTGGFTDVLLRRGAAHVVAVDVGHGQLVPHLRDDPRVEVHEGMNVRYMAPADIGGPAALTVADLSFISLTLVVQPLADCTGPGGDLVLMVKPQFEIGKDRLGRTGVVTSERERRMAVEKVARAALDAGLDLCGLAVSPLPGQDGNVEYFLWIKRRITQDLPKIEEREAAAAALLGQIWPNH
>NZ_CP041198.1|WP_141160919.1|1010726_1011752_+|NAD-kinase
MSRRVLVLAHTGREESLKAAWEACALLHASGMVPVMQESELGDMERFFGHLAQPVEVLHDHVQLPDVELVMVLGGDGTILRAAELVREVDVPLLGVNLGHVGFLAESERADLAQTVEWIASREYTVEERMTIDVQVWVRGQKIWHTWALNEAAIEKANRERMLEVVTEVDERPLTSFGSDGIVLATPTGSTAYAFSAGGPVVWPEVEALVIVPISAHALFAKPLVVSPRSRLAVEVLGRTDAQGVLWCDGRRSVDLPPGARVEVTKSATPVRLARTHQTPFSARLVRKFELPIHGWRGPVPKSDAVHTGPIPIVRTPRPMPPLPVPNAENPGSDPDPSTAK
>NZ_CP041198.1|WP_141181210.1|1011756_1013496_+|DNA-repair-protein-RecN
MLEELRIRDLGVITDATLPLGPGLSVVTGETGAGKTMVVTAVGLLLGARSDAGAVRSGAKSATAEAVLKLDAGHPAIARALDAGADTEEFDGGAELILARRLGADGRSRAFLGGRAAPVGVLAEIGESLVVVHGQSDQIRLKSATAQREALDKFAGDHLAGPLAAYQELYSRWKANQAELDSLRSAARDRLREAESLEAALAEIDEVDPQPGEDELLKAEAVKLANVEELRIAASTAHQALIAEDFGETGDATTLVDSAKRTLEHVAEHDAELGSAAARLAEVGFLLNDIATELASYQAGLDTEGPERLAEIEDRRAALAKLVRKYAPTIDEVLAWAETARVRYDELQDDSSRIEALDADVVRAEAELTKQSAAISKIRTKAAKDLSSRVSAELKALAMADATLVINLEPAGQLGPHGADDISFLLQPHSGAPARPLGKGASGGELSRVMLAIEVVLAAVDPVPTFVFDEVDAGVGGRAAVEIGRRLAMLAQHVQVLVVTHLPQVAAFADQHITVTKTSTRGADGGTATGFTSSDVRLLDGPERVRELARMLAGQEDSESARAHAQELLDDAKLLPQRA
>NZ_CP041198.1|WP_141160918.1|1013524_1015300_+|CTP-synthase
MIGSNSVVQRSNSRVNSRFPGSSKMTKHIFVTGGVASSLGKGLTASSLGHLLRARGLSVTMQKLDPYLNVDPGTMNPFQHGEVFVTDDGAETDLDIGHYERFLDENLEGSANVTTGQVYSTVIAKERRGEYLGDTVQVIPHITDEIKRRMRLPAEGKNAPDVIITEIGGTVGDIESQPFLESARQVRQDVGRGNVFFVHVSLVPYIGPSQELKTKPTQHSVAALRSIGIQPEAIVIRSDREIPEAMRAKIGRMCDVDLEAVIGCPDAPSIYDIPKTLHSQGLDSYIVRALDLPFKDVDWTSWDRLLEAVHNPKHQVEIALVGKYIDLPDAYLSVTEALRAGGFANEAKVKIRWVPSDECETREGAIKALDGVDAICVPGGFGIRGLEGKLGALKFARETKLPVLGLCLGLQCMVIEYARNVVGLEGASSSEFEPDSKYPVIATMEEQLEFVEGRGDLGGTMRLGLYEAKLDEGSVIAGTYGKTTVSERHRHRYEVNNKYREQIAGKGLVFSGTSPDGKLVEFVELPADVHPYYVATQAHPELSSRPTRPHPLFTGLIKAALDHQGAGQQATADTAAPAAEEPAVSGSVTAK
>NZ_CP041198.1|WP_141160917.1|1015325_1015985_+|NUDIX-domain-containing-protein
MPGTPEATPAKQVSDAPSPRRLLSTEKVYQGRIWDVVSDTFQLSESGDALTRDYIDHPGAVAVLPMNDEGQVLLLKQYRHPVGMDLWEVPAGLLDVEGEDFVVGAARELAEEADLAAGTWNVLADVFNSPGSSSEAIRIYLARDLTEVPHHERHERTDEEAEIEFHWISLDDAVASVLAGRLHNPSAVVGILAAAAARSSSYEGLRPADAPWPAHPSQR
>NZ_CP041198.1|WP_141161620.1|1016095_1017022_+|site-specific-tyrosine-recombinase-XerD
MDRGITDYLQHLGVERGLAANTLAAYRRDLARYARYLAGAGCTRPGDITRHHVTGYVRALSDGSDGGSALGVRSAARTVVAVRGLHKFWALEGHTTADPASEVHPPMAGKRLPKAISVAEVTRILEAAGTDTATGLRDRALLEFLYSTGARISEAVGLDVDDISLAEPGSGPAIVRLFGKGSKERLVPLGSYGARALDAYLVRGRPLLAAKGKGTPALFLNARGGRISRQSAWTILKAAAEKANITRDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTADTLREIYAAAHPRALG
>NZ_CP041198.1|WP_141160916.1|1017084_1017591_+|NUDIX-domain-containing-protein
MTAAAVTLCFLLRDGENGSEVLLGLKQTGFGKGKIVGIGGHVEPGESHAQAVVREVLEETGVVLRQEDLRDAGSVHFVFPSRPEWDMETSLFTARTWEGEPEPSDEILPGWFRVDTLPVDRMWQDADHWLPVVLEGRKVNVVVTMATDNESVASSRSLLGQAGRPLDS
>NZ_CP041198.1|WP_141160915.1|1017653_1018793_-|bifunctional-2-methylcitrate-synthase/citrate-synthase
MAENEIKKGLAGVVVDYTAVSKVNPDTNSLLYRGYPVQELAARCSFEEVAYLLWNGELPTTEQLAEFTARERAGRALDPVVKQVIDALPVTSHPMDVCRTAASVMGARHPQAEDSSREANMAKAVDLFAAMPAVVAYDQRRRHGQELVEPRDDLGYSANFLWMAFGEEQVPEVVEAFNVSMILYAEHSFNASTFTARVITSTLSDLHSAVTGAIGALKGPLHGGANEAVMHTFDEIGIRQEESLEEAAARAKAWMEDALAQKKKVMGFGHRVYKHGDSRVPTMKAALDKMIAHYGRPELLGLYNGLETAMDEAKAIKPNLDYPAGPTYHLMGFDTPTFTPLFVASRITGWTAHIMEQLDANSLIRPLSEYNGVEERHLP

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Crispr_ID: NZ_CP041198_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041198_3

2875586-2875666

Orphan

Consensus_repeat	Method
CGCGCCTTCCCCTCCGCGGCCCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041198_3

>merge|NZ_CP041198|3|2875586-2875666|CRISPRCasFinder
CGCGCCTTCCCCTCCGCGGCCCACCCTCCTTAGCGACGCGCACCTCCGTTTTCGACGCGCACCTTCCCCTCCGCGGCCCAC

>NZ_CP041198|3|3|2875586-2875666|CRISPRCasFinder
CGCGCCTTCCCCTCCGCGGCCCAC	CCTCCTTAGCGACGCGCACCTCCGTTTTCGACG
CGCACCTTCCCCTCCGCGGCCCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041198.1\|WP_141159554.1\|2865998_2867225_-\|phenylacetate-CoA-oxygenase/reductase-subunit-PaaK	unknown	unknown	gnl\|CDD\|131215
NZ_CP041198.1\|WP_141182296.1\|2873836_2874508_+\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NZ_CP041198.1\|WP_141182306.1\|2882904_2883933_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381313
NZ_CP041198.1\|WP_141182300.1\|2876977_2877796_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP041198.1\|WP_141182295.1\|2870695_2871715_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041198.1\|WP_141182294.1\|2868990_2869986_-\|1,2-phenylacetyl-CoA-epoxidase-subunit-A	unknown	unknown	gnl\|CDD\|184320
NZ_CP041198.1\|WP_141182293.1\|2868616_2868994_-\|1,2-phenylacetyl-CoA-epoxidase-subunit-B	unknown	unknown	gnl\|CDD\|237504
NZ_CP041198.1\|WP_141182301.1\|2878553_2879039_+\|DUF4188-domain-containing-protein	unknown	unknown	gnl\|CDD\|316352
NZ_CP041198.1\|WP_141182298.1\|2875831_2876266_+\|glyoxalase	unknown	unknown	gnl\|CDD\|226134
NZ_CP041198.1\|WP_168223175.1\|2877911_2878496_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379115
NZ_CP041198.1\|WP_141183435.1\|2873070_2873832_+\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|182775
NZ_CP041198.1\|WP_141161490.1\|2872399_2873053_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
NZ_CP041198.1\|WP_141182292.1\|2867759_2868620_-\|phenylacetate-CoA-oxygenase-subunit-PaaC	unknown	unknown	gnl\|CDD\|368300
NZ_CP041198.1\|WP_141182305.1\|2882009_2882891_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381353
NZ_CP041198.1\|WP_141182303.1\|2880491_2880872_+\|STAS/SEC14-domain-containing-protein	unknown	unknown	unknown
NZ_CP041198.1\|WP_141183434.1\|2867235_2867757_-\|phenylacetate-CoA-oxygenase-subunit-PaaJ	unknown	unknown	gnl\|CDD\|131214
NZ_CP041198.1\|WP_141182299.1\|2876271_2876913_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|334619
NZ_CP041198.1\|WP_141182304.1\|2881020_2881923_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|375319
NZ_CP041198.1\|WP_141182297.1\|2874504_2875494_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP041198.1\|WP_141182302.1\|2879270_2880245_+\|type-IV-toxin-antitoxin-system-AbiEi-family-antitoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|379128

Protein	Function_ID	Function_description	E-value
NZ_CP041198.1\|WP_141159554.1\|2865998_2867225_-\|phenylacetate-CoA-oxygenase/reductase-subunit-PaaK	gnl\|CDD\|131215	TIGR02160, 12-phenylacetyl-CoA_epoxidase_subunit_E, phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other].	6.1301e-158
NZ_CP041198.1\|WP_141182296.1\|2873836_2874508_+\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	4.66366e-58
NZ_CP041198.1\|WP_141182306.1\|2882904_2883933_+\|aldo/keto-reductase	gnl\|CDD\|381313	cd19087, AKR_AKR12A1_B1_C1, AKR12A, AKR12B, AKR12C families of aldo-keto reductase (AKR). Streptomyces fradiae TylCII, Saccharopolyspora erythraea EryBII, and Streptomyces avermitilis aveBVIII are founding members of aldo-keto reductase family 12 member A1 (AKR12A1), B1 (AKR12B1), and C1(AKR12C1), respectively. TylCII acts as a NDP-hexose 2,3-enoyl reductase. EryBII is a mycarose/desosamine reductase involved in L-mycarose and D-desosamine production. aveBVIII functions as a dTDP-4-keto-6-deoxy-L-hexose-2,3-reductase.	7.18365e-161
NZ_CP041198.1\|WP_141182300.1\|2876977_2877796_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.09356e-10
NZ_CP041198.1\|WP_141182294.1\|2868990_2869986_-\|1,2-phenylacetyl-CoA-epoxidase-subunit-A	gnl\|CDD\|184320	PRK13778, paaA, phenylacetate-CoA oxygenase subunit PaaA; Provisional.	0
NZ_CP041198.1\|WP_141182293.1\|2868616_2868994_-\|1,2-phenylacetyl-CoA-epoxidase-subunit-B	gnl\|CDD\|237504	PRK13781, paaB, phenylacetate-CoA oxygenase subunit PaaB; Provisional.	2.13301e-59
NZ_CP041198.1\|WP_141182301.1\|2878553_2879039_+\|DUF4188-domain-containing-protein	gnl\|CDD\|316352	pfam13826, DUF4188, Domain of unknown function (DUF4188).	9.66444e-48
NZ_CP041198.1\|WP_141182298.1\|2875831_2876266_+\|glyoxalase	gnl\|CDD\|226134	COG3607, COG3607, Predicted lactoylglutathione lyase [General function prediction only].	5.26385e-46
NZ_CP041198.1\|WP_168223175.1\|2877911_2878496_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379115	pfam13305, WHG, WHG domain. This presumed domain is around 80 amino acids in length. It is found to the C-terminus of a DNA-binding helix-turn-helix domain. This domain may be involved in binding to an as yet unknown ligand that allows a transcriptional regulation response to that molecule. The domain is named WHG after three conserved residues near the C-terminus of the domain.	1.13195e-11
NZ_CP041198.1\|WP_141183435.1\|2873070_2873832_+\|alkaline-phosphatase	gnl\|CDD\|182775	PRK10847, PRK10847, DedA family protein.	7.07381e-47
NZ_CP041198.1\|WP_141161490.1\|2872399_2873053_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	1.71532e-24
NZ_CP041198.1\|WP_141182292.1\|2867759_2868620_-\|phenylacetate-CoA-oxygenase-subunit-PaaC	gnl\|CDD\|368300	pfam05138, PaaA_PaaC, Phenylacetic acid catabolic protein. This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid. These proteins may form part of a dioxygenase complex.	4.30103e-109
NZ_CP041198.1\|WP_141182305.1\|2882009_2882891_+\|aldo/keto-reductase	gnl\|CDD\|381353	cd19127, AKR_AKR5B1, AKR5B family of aldo-keto reductase (AKR). Pseudomonas putida morphine 6-dehydrogenase (M6DH) is a founding member of the aldo-keto reductase family 5 member B1 (AKR5B1). M6DH (EC 1.1.1.218), also called naloxone reductase, oxidizes the C-6 hydroxy group of morphine and codeine.	6.13049e-162
NZ_CP041198.1\|WP_141182304.1\|2881020_2881923_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|375319	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain. This domain is found in a family of actinobacterial transcription factors. The structure shows it has a PAS domain like fold and it is bound to Myristic acid.	1.57845e-57
NZ_CP041198.1\|WP_141183434.1\|2867235_2867757_-\|phenylacetate-CoA-oxygenase-subunit-PaaJ	gnl\|CDD\|131214	TIGR02159, Putative_12-phenylacetyl-CoA_epoxidase_subunit_D, phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA. [Energy metabolism, Other].	1.8687e-63
NZ_CP041198.1\|WP_141182299.1\|2876271_2876913_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|334619	pfam01638, HxlR, HxlR-like helix-turn-helix. HxlR, a member of this family, is a DNA-binding protein that acts as a positive regulator of the formaldehyde-inducible hxlAB operon in Bacillus subtilis.	3.46319e-25
NZ_CP041198.1\|WP_141182297.1\|2874504_2875494_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.93289e-40
NZ_CP041198.1\|WP_141182302.1\|2879270_2880245_+\|type-IV-toxin-antitoxin-system-AbiEi-family-antitoxin-domain-containing-protein	gnl\|CDD\|379128	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin. AbiEi_4 is the cognate antitoxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	0.00273681

>NZ_CP041198.1|WP_141182297.1|2874504_2875494_+|HAMP-domain-containing-histidine-kinase
MTSGPADPDRETLRRASLKVALRISAGVAVLVLVLLAAATVFLMNKLAHPSVPSSPAYTYLDSRDLIEGMILAGLAGIVLAGVVGWVSARSAIRPLGEALARQRRFVQDASHELRTPLAILDTRIQLAQRKAEPGSESAQALARIREDTATLTGIVNELLLAATASAPSAGAEPADAASVARSVSESLQDLARQQGVSVEFSSGGQALVRVDPGSLRRAVLALADNALAHTPSRGRVAISCSVEGSRAVILVADTGSGITGVDPGRIFDRFVRAPGLDGDGGRRSFGIGLALVRDIATAAGGTVEVARTGPGGTTMRLALPLALPLAPD
>NZ_CP041198.1|WP_141182296.1|2873836_2874508_+|response-regulator
MTPADRLSLLLAEDDPALGPLITELLEPDYRVRLAVTGQEALHLGLTQPWDVMVIDRGLPILDGLGVIAALRSKGIGTPILVLTALGETDEKVRGLDAGANDYMAKPFDAGELAARLRALTRTFRTPAGPVGIGTWEFDPASRAVRSPYGDLVTLTAKEAEVLAALAAEPGRVFTRDELLAAHFQSTDQPGVIDTYVHHLRRKISRTVIRTVHGVGYQIGDPS
>NZ_CP041198.1|WP_141183435.1|2873070_2873832_+|alkaline-phosphatase
MLAAHAISGVATASGSPSLLDPASLLEGFGPAALGVIAVMVFIESGVLFPFLPGDSLLFTAGLLHQQLNLALPVLIGVVTAAAVAGDQVGFLLGRKFGRRWFKDDAKVLKTAHLTATENFFHRHGGAAIVLARFVPIIRTFAPLTAGTARYGHKAFTLWNIVGALAWATSVTLLGTWLGHYEVIARNIDVIAILMVLVSVVPWGIEYLKHRRRNRRAAAEQATDDDGTDLGADAAPSLDTAASTSGRDSGTTE
>NZ_CP041198.1|WP_141161490.1|2872399_2873053_+|phosphatase-PAP2-family-protein
MLGVLLCAAVVALGLTVQLTPGETTAELHVDQDLSQHHVAALTAIAMVINVLFAPVAGVCIIAAIALVLWLVHRDFPKAIAFGLTACSGWVASEVFKLIIARQRPNPGLLYDPLAPETGSNSFPSGHVSFAVALAFAVYFLSRGTRWSKPVAAAGAALPVIVAWSRVYVGVHYPTDVIASFLAAGAAVVLLAGLWNRFGPRLLDRLPAALTAPASRH
>NZ_CP041198.1|WP_141182295.1|2870695_2871715_+|hypothetical-protein
MRRFLALLIAVALTGVAMPALGASAARAAAGPCIGAPPADGTSYAETRQFVDAQSWWMPDADQANNSVTNNGHVHLGACIPERETISSGNFTVNVRVVLHDNPGTADYVSMVFLTSSGETAVQKCYLRAAAADFACPGPSSTGGGDFVCSETCERWLTFSRPLSAFSHSGLQEVHLRAFVPEPNGNEMRASLNWQTDIQNGKSRSDAARYPFLRGKGWYTHSGYCEASVRSVPIPDAPVSGVWTPAVGLTTHPNGSLPATHSFISIDPDFHSDPPNPGTVLWDSAGPYGRASFGSAPIAIDTRTLANGVHKLHLRTSCRDNKLGSTNSGVTVVPFTVAN
>NZ_CP041198.1|WP_141182294.1|2868990_2869986_-|1,2-phenylacetyl-CoA-epoxidase-subunit-A
MAAQNLQSVPAELTPEEDAAGQAHFDRIIAEDSRIEPRDWMPAAYRKTLLRQVSQHAHSEIIGMQPEANWISRAPSLKRKAILMAKVQDEAGHGLYLYSAAETLGQSRDKMMDDLIAGKARYSSIFNYPARTWADMGAIGWLVDGAAICNQVPLCRASYGPYGRAMVRVCKEESFHQRQGFEILLELSNGTPEQKQMAQDAVNRWYAPALMMFGPPDDDSPNSKQSMAWNIKRFSNDELRNRFVGMMVEQVKVLGLTLPDDQIRFNEDTKKWEHGPLDWDEFHEVLAGRGPCNAQRLERRRSAHDDGAWVREAAAAYAAKQSAKMQKEYAA
>NZ_CP041198.1|WP_141182293.1|2868616_2868994_-|1,2-phenylacetyl-CoA-epoxidase-subunit-B
MSPHGNPETPASSATEINREAPKASPAPDRHDRSTWGLWEVFVRSSRGLSHVHAGSLHAPDAAMALRNARDLYTRRNEGVSIWVVPADAIAASDPDSKGSFFESPQGKDYRHATYYTKSEGVKHL
>NZ_CP041198.1|WP_141182292.1|2867759_2868620_-|phenylacetate-CoA-oxygenase-subunit-PaaC
MSEANASATRITPGNALRPEDIALEVKTGLAKPSEDVAEYALRLGDDALVLAQRLGHWISRAPELEEDIALGNIALDQLGHARSFLTYAGAGMPKEDDTPKSEDDLAYFRREHEFRSVQLFEQPNGDFAATIARQFVVSYYQYELYRRLTESTDATLAAVAAKAVKEVDYHRDHSAQWVLRLAGGTEESRTRMIHGLRTMWPYVAELFRDDELTERLAQAGAGVPPSSLREDFDRLTAEVLNEAGLEVPDVPAAPGGGRQGKHSEYLGYILAEMQVLAREHPGASW
>NZ_CP041198.1|WP_141183434.1|2867235_2867757_-|phenylacetate-CoA-oxygenase-subunit-PaaJ
MYVSDFESRTRTPQQDAWDIAATVVDPEIPVLTIADLGILRDVQVTDSKVTVTITPTYSGCPAMDAIRDDLYTAFAKEGYQDVHVDLVLSPAWTTDWMTESGKQKLQEYGIAPPSGNSRAGGHSGPIRLSLAVKCPQCNSLNTKELTRFGSTSCKALYVCQDCKEPFDYFKVL
>NZ_CP041198.1|WP_141159554.1|2865998_2867225_-|phenylacetate-CoA-oxygenase/reductase-subunit-PaaK
MPVVRQTAAEEAEVTGRRRPSFHTLAVKEVRRLTDDAIEVAFHVPAELAGKFDYLPGQYVALRTTLPDESGEPKEIRRSYSICAEPRSFADGTSEIRVAIKKDLGGLFSTWANAELKAGDTLDVMSPMGAFVSKHGRDGVAVDQNVMNSMNHPEDLAGEAGNFVAIAAGSGITPVIAIARTLLAANPDTRFDLIYANKAAMDVMFLEELADLKDKYPQRLAIHHVLSREQRIAPLLSGRIDAEKLQQLLGTALHADDVDEWFLCGPFELVQLCRDTLAERGVKPENVRFELFTSGKPDRPEGQAGRPVIVDESKETYKITFKLDGLQGEVASPTHARESILNAALRVRPDVPFACAGGVCGTCRAKVVTGTVTMDENYALEQDELDKGYVLTCQSHPTSKEVTVDFDV
>NZ_CP041198.1|WP_141182298.1|2875831_2876266_+|glyoxalase
MTAMFVNLPVTDLERAKAFYTAVGFTINPLFTDHNAACVVVEEEHSYFMLLVREYFQTFSERPIGDPSATVSATTAIFLDSRDAVDSTVASGLAAGGSEAQPASDYGFMYQRQLTDPDGNILEFGYMDPAAAQQGPEAFMNQQA
>NZ_CP041198.1|WP_141182299.1|2876271_2876913_+|winged-helix-turn-helix-transcriptional-regulator
MAARDYGQYSGITQAMEIVGERWALLIVRDLLVGPRRYGELAAGLPRIPTNILAARLKELQAAGVIRRAPRSRVIVYELTPYGRELEPVILALGAWGFKAMGDPREEQIITPDSMTMDLRTTFRPDVAATLPATAYAAHFGSTELLIRVDGPSLDVRRGDGAADLAFASGPGIRRLIAGELAPDRAIESGVVQVLSGQGNLLHRFADTFHLAA
>NZ_CP041198.1|WP_141182300.1|2876977_2877796_+|alpha/beta-fold-hydrolase
MTKTQETGTVVSILSPDGTSLSVERMGTGPSLVLVDGAFCGRNFGPSRALANELKDAFTVYFYDRRGRGDSGETLPYATEREIEDLQAVLNEAGGNPFVYGISSGAALALEAAAAGVPMRGLATYEAPYTGVQGADGTPGSHREHLEALLRDGKRGNAVSYFLVKMVGAPAFLPYMLRLMPGVWKKQTAAANTLPYETRVTNNFVAPVDRLRTITVPTLVMVGGKAPDPMAQGQQTIAAAVPGSEHRVLDGQTHQVSAAAIATQLRDLFRGD
>NZ_CP041198.1|WP_168223175.1|2877911_2878496_-|TetR/AcrR-family-transcriptional-regulator
MGSMARPVVHNDSLRRDLLDVTAGLVDRSGPARLTLRDVAAAARTSTTAVYSLFGGKAQLLTAVVEDGFRSFGDSQRAAAGGGLQGLGNAYRAWALQHPALYRLMFGGALAAYVDCQPDPDAAMDAMQPLKDAVASAQTAGTLREAPVDLVAAAIWGQVHGLVSLELAQVGPPGADWAGVYVQALEAVGRGWAA
>NZ_CP041198.1|WP_141182301.1|2878553_2879039_+|DUF4188-domain-containing-protein
MAQKVFPGRYTADPARESVTVFLIGMRANRWWKIGTVGRVGAAMGRMLQHLAAVPEAGMLGYHQWAGRTTMLVSYWESPEHLRKFAADRDAPHLEPWRRFMKELAGSGDVGVWHETYQVPATGIEVVYSGMPVFGLAKATTHVPIGAGTNTAKQRMGHAGA
>NZ_CP041198.1|WP_141182302.1|2879270_2880245_+|type-IV-toxin-antitoxin-system-AbiEi-family-antitoxin-domain-containing-protein
MTELPPFLLSRDRILHGLSANDLAKRVRSGTLVRVRHGVYVDGPTWRDLKPWQQYRVRVQAAAETFEKPTIFARHSSASVWDIPFIGQNHPVQALTLKNDGGRSRAGVSRHFAARSGLRACCVEGLLVTDRVRTVLDLAAFSPFAEAMAPLDHVLRPDLARQLPALTKAELEAGIGNIYSAAAARRIRAAIAFADPASASAGESWSRALIHVAGFEPPLLQQRFTDAAGLVGYSDFYWKESRIIGEFDGEEKYVKPEFLKGRTTSEAVLAEKKRENRLRSLGFRVERWDWAELAAAGTLERKLAAAGVGRRRTRSAVLDPQNPL
>NZ_CP041198.1|WP_141182303.1|2880491_2880872_+|STAS/SEC14-domain-containing-protein
MEDQGDADVTGTIELSGGLLHLKWSPGDVVTEGDARALMHRARALSGDRALPMLVEMTGLEWIDQGALKAFAGTWPVKCAAVVGTSPVDQTLADFYMGRHKPAHPTRYFTSMDEALAWLNEDAPLV
>NZ_CP041198.1|WP_141182304.1|2881020_2881923_-|helix-turn-helix-domain-containing-protein
MTNSEDVRKFLASRRARLTPDEAGLPAYGGDRRVKGLRREEVAMLAGMSIDYYIRLERGNLSGASDSVLEALARALQLDDAETAHLFDLARASTAAPRVRRKRSPQTVRPSVQRVIDAITSAPAWVRNDRGDVLASNELGRALYLEMMLDGGTPPNSARFTFLSPRAREFFADWERAADDIVAVLRSTAGKNPYDKDLSDLIGELSTRSEEFRVRWARHDVKYHRTGRKRLHHSIVGDLDLTYEAMELPADPGLRVNIYTAEPGSPSEDALKVLASWAATQRALGAAPEVPASDVAAQET
>NZ_CP041198.1|WP_141182305.1|2882009_2882891_+|aldo/keto-reductase
MELTLNNGITLPALGLGVFQSPPEETTAAVQTALEVGYRHIDTAAAYGNEREVGEGIRRSGLPREEVFIETKVWVSDYGYDEALHAWDKAVGKVGVEQLDLLILHQPAPDRFDKTIAAYKALETLLKDGRVRAIGVSNFMPHHLTQLLAETDVVPAVNQIELHPYFAQRNVQAADAEHGILTQAWSPIGGITFYPGWGENRKNVMRDPAIAAVADAHGKTPAQVMLRWHLQQGRSAIPKSTNPVRIAENFDVFGFELSAAELAAIDALDTGIRSGPDPDVARPERFAMVIPEA
>NZ_CP041198.1|WP_141182306.1|2882904_2883933_+|aldo/keto-reductase
MEYRPLGRTGVQVSPLCLGAMMFGPWGNDDRADATRLIHRALDAGINFIDTADVYSGGASEEIVGAALAGRRDDVFLATKFFMPMNEKDPNQRGGSRRWIMREVEDSLRRLNTDHIDLYQVHRPSPDTDVEETLGALTDLVRQGKVRYIGSSSYSGSQIVEAQWASRERNLERFVTEQPPYSILTRGIEEDVLPTVQRHGMGTLTYSPLAGGWLSGRWRKDSASRPTSSARPSARFDMSQPANQRKLDIVEELAQVAEWAGVTLIELAIAFVINHPGVTSAIVGPRTMEQLESYLPAADTVLAPEVLDRIDQLVAPGVTVNPDDNSYGAHELSAHARRRQRA

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP041198_1	1.1\|966032\|19\|NZ_CP041198\|CRISPRCasFinder	966032-966050	19	NZ_CP041198.1	3704283-3704301	2	0.895

1. spacer 1.1|966032|19|NZ_CP041198|CRISPRCasFinder matches to position: 3704283-3704301, mismatch: 2, identity: 0.895

ggaagcgcccaaggcccag	CRISPR spacer
ggaagcggccaaggccaag	Protospacer
******* ******** **

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

8782 : 17969

Arthrobacter_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141180671.1\|8782_9271_-	hypothetical protein	A0A1B3AZY7	Gordonia_phage	3.3e-31	45.8
WP_141180672.1\|9322_9922_+	hypothetical protein	NA	NA	NA	NA
WP_141180673.1\|9967_10303_+	hypothetical protein	NA	NA	NA	NA
WP_141180674.1\|10312_11872_-	DNA cytosine methyltransferase	A0A1B3AYU4	Gordonia_phage	6.8e-147	50.7
WP_141180675.1\|11968_12247_-	hypothetical protein	NA	NA	NA	NA
WP_141180676.1\|12243_13377_-	DNA polymerase III subunit beta	A0A222Z1S2	Arthrobacter_phage	1.8e-27	26.5
WP_168223095.1\|13607_13925_-	glutaredoxin family protein	A0A1W6JK33	Lactococcus_phage	6.9e-06	40.7
WP_141180678.1\|14030_14498_-	hypothetical protein	NA	NA	NA	NA
WP_141180679.1\|14508_14919_-	hypothetical protein	NA	NA	NA	NA
WP_141180680.1\|14933_15398_-	single-stranded DNA-binding protein	A0A222ZFS3	Arthrobacter_phage	1.9e-20	36.4
WP_168223096.1\|15394_16609_-	AAA family ATPase	A0A1I9SCY1	Arthrobacter_phage	6.0e-74	42.9
WP_168223097.1\|16605_17151_-	hypothetical protein	V5RBF5	Arthrobacter_phage	4.9e-52	62.2
WP_141180682.1\|17147_17969_-	YqaJ viral recombinase family protein	A0A2L0HJW4	Mycobacterium_phage	1.3e-77	58.3

DBSCAN-SWA_2

259997 : 268476

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141180810.1\|259997_260768_-	uracil-DNA glycosylase	S4VYQ4	Pandoravirus	6.4e-29	38.8
WP_141158050.1\|260902_261232_+	DUF3263 domain-containing protein	A0A2H4PF05	Gordonia_phage	8.2e-10	47.1
WP_141180811.1\|261284_261923_+	LytR family transcriptional regulator	NA	NA	NA	NA
WP_141180812.1\|261988_262195_+	cold shock domain-containing protein	Q9AZD3	Lactococcus_phage	3.1e-15	58.2
WP_141183271.1\|262194_263463_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_141158046.1\|263753_265388_+	chaperonin GroEL	A0A240F779	uncultured_virus	3.4e-149	54.3
WP_141180813.1\|265553_266564_+	DUF4440 domain-containing protein	A0A142CJN1	Brazilian_marseillevirus	1.6e-19	38.7
WP_141180814.1\|266572_266860_-	WXG100 family type VII secretion target	NA	NA	NA	NA
WP_141180815.1\|266964_268476_-	HAMP domain-containing protein	W8CYF6	Bacillus_phage	9.9e-26	33.2

DBSCAN-SWA_3

2168568 : 2209112

Arthrobacter_phage(31.03%)

capsid,transposase,portal,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141181860.1\|2168568_2169357_-	cell division ATP-binding protein FtsE	G9BWD6	Planktothrix_phage	3.0e-26	34.3
WP_018760183.1\|2169543_2170659_-	peptide chain release factor 2	NA	NA	NA	NA
WP_141181861.1\|2170706_2171153_-	hypothetical protein	NA	NA	NA	NA
WP_141181862.1\|2171149_2171536_-	hypothetical protein	NA	NA	NA	NA
WP_141181863.1\|2171693_2172110_-	pilus assembly protein	NA	NA	NA	NA
WP_141181864.1\|2172295_2173135_-	hypothetical protein	A0A1S5S8Z0	Streptococcus_phage	7.2e-10	24.1
WP_141181865.1\|2173203_2174646_-	recombinase family protein	Q9T200	Bacillus_phage	4.7e-17	22.0
WP_141181866.1\|2174686_2175106_-	ImmA/IrrE family metallo-endopeptidase	A0A1P8D5N3	Corynebacterium_phage	2.0e-08	42.6
WP_141181867.1\|2175080_2175704_-	hypothetical protein	A0A166XZM5	Gordonia_phage	4.4e-28	48.0
WP_141181868.1\|2175931_2176213_+	helix-turn-helix domain-containing protein	A0A0U4AZ39	Gordonia_phage	1.0e-16	55.4
WP_141181869.1\|2176362_2176587_+	hypothetical protein	NA	NA	NA	NA
WP_141181870.1\|2176583_2177345_+	hypothetical protein	NA	NA	NA	NA
WP_141181871.1\|2177341_2177770_+	hypothetical protein	NA	NA	NA	NA
WP_141181872.1\|2177766_2178126_+	hypothetical protein	NA	NA	NA	NA
WP_141181873.1\|2178122_2179487_+	ParB/RepB/Spo0J family partition protein	A0A1C9EHW0	Gordonia_phage	7.6e-33	44.3
WP_141181874.1\|2179479_2179869_+	hypothetical protein	NA	NA	NA	NA
WP_141181875.1\|2180001_2180835_+	hypothetical protein	G1FGH9	Mycobacterium_phage	4.6e-17	29.2
WP_141181876.1\|2181009_2181879_+	hypothetical protein	A0A1C9EI29	Gordonia_phage	7.7e-15	30.3
WP_141181877.1\|2181875_2182319_+	hypothetical protein	NA	NA	NA	NA
WP_141181878.1\|2182224_2183205_+	hypothetical protein	A0A1C9EI32	Gordonia_phage	3.3e-46	43.9
WP_141181879.1\|2183241_2183541_+	VRR-NUC domain-containing protein	A0A1B1IPM4	uncultured_Mediterranean_phage	2.9e-14	48.8
WP_141181880.1\|2183537_2184353_+	hypothetical protein	NA	NA	NA	NA
WP_141181881.1\|2184906_2185149_+	HNH endonuclease	A0A142F2R4	Mycobacterium_phage	2.4e-14	50.0
WP_141181882.1\|2185303_2185636_+	hypothetical protein	A0A286N4B8	Arthrobacter_phage	4.5e-16	41.7
WP_141181883.1\|2185635_2186157_+\|transposase	transposase	A0A0E3T6X9	Gordonia_phage	7.4e-05	39.8
WP_141181884.1\|2186160_2187759_+\|terminase	terminase	A0A222ZEP5	Arthrobacter_phage	2.2e-148	54.7
WP_168223150.1\|2187774_2187999_+	hypothetical protein	NA	NA	NA	NA
WP_168223151.1\|2188010_2190014_+\|portal	phage portal protein	A0A173G9F1	Propionibacterium_phage	1.7e-105	36.1
WP_141181886.1\|2190017_2191022_+	hypothetical protein	A0A2L1IY03	Mycobacterium_phage	1.2e-35	39.4
WP_141181887.1\|2191039_2192272_+\|capsid	phage major capsid protein	A0A173G9U3	Propionibacterium_phage	2.5e-59	35.7
WP_141181888.1\|2192366_2192708_+	hypothetical protein	NA	NA	NA	NA
WP_141181889.1\|2192714_2193311_+	hypothetical protein	NA	NA	NA	NA
WP_141181890.1\|2193310_2193655_+	hypothetical protein	NA	NA	NA	NA
WP_141181891.1\|2193654_2193840_+	hypothetical protein	NA	NA	NA	NA
WP_141181892.1\|2193814_2194063_+	hypothetical protein	A0A222ZG63	Arthrobacter_phage	2.6e-08	52.4
WP_141181893.1\|2194055_2194442_+	hypothetical protein	NA	NA	NA	NA
WP_141181894.1\|2194484_2195063_+\|tail	phage tail protein	M1PRW6	Streptococcus_phage	3.7e-21	37.0
WP_141181895.1\|2195165_2195465_+	hypothetical protein	NA	NA	NA	NA
WP_141181896.1\|2195626_2195863_+	hypothetical protein	NA	NA	NA	NA
WP_141181897.1\|2195892_2199165_+\|tail	phage tail tape measure protein	A0A1P8VV74	Rathayibacter_phage	6.4e-46	43.6
WP_141181898.1\|2199348_2200131_+	hypothetical protein	V5R994	Arthrobacter_phage	3.1e-47	40.7
WP_141181899.1\|2200135_2201251_+	hypothetical protein	V5R8Z5	Arthrobacter_phage	1.7e-83	47.2
WP_141181900.1\|2201251_2202199_+	hypothetical protein	V5RBD3	Arthrobacter_phage	1.5e-43	45.1
WP_141181901.1\|2202195_2202621_+	hypothetical protein	A0A140G6V7	Arthrobacter_phage	3.1e-09	32.3
WP_141181902.1\|2202631_2202979_+	hypothetical protein	A0A222Z8E7	Arthrobacter_phage	3.2e-12	46.9
WP_141181903.1\|2203046_2204234_+	LysM peptidoglycan-binding domain-containing protein	A0A0U4IDK0	Arthrobacter_phage	3.3e-69	54.5
WP_141181904.1\|2204358_2204682_+	hypothetical protein	NA	NA	NA	NA
WP_141181905.1\|2204733_2206812_+	polysaccharide deacetylase family protein	A0A160DH83	Gordonia_phage	5.9e-37	30.4
WP_141181906.1\|2206812_2207058_-	hypothetical protein	NA	NA	NA	NA
WP_168223152.1\|2207054_2209112_-	acyltransferase	A0A166XZF2	Gordonia_phage	4.0e-94	35.3

DBSCAN-SWA_4

4384527 : 4403790

Arthrobacter_phage(72.22%)

capsid,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141183233.1\|4384527_4385787_-	LamG domain-containing protein	V5R8Z8	Arthrobacter_phage	3.3e-06	38.7
WP_141183234.1\|4385779_4386064_-	hypothetical protein	NA	NA	NA	NA
WP_141183235.1\|4386074_4387259_-	LysM peptidoglycan-binding domain-containing protein	A0A0U4IDK0	Arthrobacter_phage	7.9e-71	54.3
WP_141183236.1\|4387320_4387722_-	hypothetical protein	NA	NA	NA	NA
WP_141183237.1\|4387714_4388191_-	hypothetical protein	NA	NA	NA	NA
WP_141183238.1\|4388187_4389105_-	hypothetical protein	V5RBD3	Arthrobacter_phage	1.9e-64	52.3
WP_141183239.1\|4389104_4390217_-	hypothetical protein	V5R8Z5	Arthrobacter_phage	3.1e-149	70.0
WP_141183240.1\|4390216_4391197_-	hypothetical protein	V5R994	Arthrobacter_phage	7.9e-125	63.8
WP_141183241.1\|4391206_4395796_-	peptidoglycan DD-metalloendopeptidase family protein	V5R8R0	Arthrobacter_phage	7.6e-170	77.0
WP_141183242.1\|4395815_4396208_-	hypothetical protein	V5RAA5	Arthrobacter_phage	1.6e-31	53.8
WP_141183243.1\|4396249_4396597_-	hypothetical protein	V5RBC9	Arthrobacter_phage	2.3e-26	55.4
WP_141183244.1\|4396628_4396829_-	hypothetical protein	V5R8Z0	Arthrobacter_phage	8.2e-05	62.2
WP_141183245.1\|4396916_4397582_-	hypothetical protein	V5R990	Arthrobacter_phage	3.3e-82	65.2
WP_141183246.1\|4397636_4398047_-	hypothetical protein	V5R8Q6	Arthrobacter_phage	1.1e-43	64.7
WP_141183247.1\|4398043_4398319_-	hypothetical protein	V5RAA1	Arthrobacter_phage	1.5e-20	58.0
WP_141183248.1\|4398315_4398651_-	hypothetical protein	V5RBC7	Arthrobacter_phage	3.8e-39	69.1
WP_141183249.1\|4398652_4399045_-	hypothetical protein	NA	NA	NA	NA
WP_141183250.1\|4399050_4399377_-	hypothetical protein	NA	NA	NA	NA
WP_168223208.1\|4399436_4400456_-\|capsid	major capsid protein E	A0A166XYQ6	Gordonia_phage	1.4e-68	42.7
WP_141183252.1\|4400469_4400838_-	hypothetical protein	A0A162E0Z2	Gordonia_phage	1.0e-08	35.0
WP_141183253.1\|4400850_4401483_-	hypothetical protein	A0A1D8EQ12	Mycobacterium_phage	9.6e-07	51.4
WP_141183254.1\|4401553_4402357_-	hypothetical protein	A0A1D8ETP7	Propionibacterium_phage	2.1e-19	30.0
WP_141183255.1\|4402356_4403790_-\|portal	phage portal protein	A0A068F3B8	Mycobacterium_phage	1.3e-59	34.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041198

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection