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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP041204 Rhizobium sp. NIBRBAC000502774 chromosome, complete genome 1 crisprs csa3,DEDDh,cas3,WYL 0 0 3 0
NZ_CP041206 Rhizobium sp. NIBRBAC000502774 plasmid pMK-3, complete sequence 1 crisprs csa3 0 1 48 0
NZ_CP041205 Rhizobium sp. NIBRBAC000502774 plasmid pMK-2, complete sequence 0 crisprs csa3 0 0 0 0

Results visualization

1. NZ_CP041204
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041204_1 754277-754378 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1796823 : 1804144 11 Geobacillus_phage(33.33%) protease,tail,portal,head,capsid NA
DBSCAN-SWA_2 2486005 : 2494153 8 uncultured_Mediterranean_phage(66.67%) tRNA NA
DBSCAN-SWA_3 2510312 : 2518748 9 uncultured_Mediterranean_phage(75.0%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP041206
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041206_1 318803-318882 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP041206_1 1.1|318826|34|NZ_CP041206|CRISPRCasFinder 318826-318859 34 NZ_CP041206 Rhizobium sp. NIBRBAC000502774 plasmid pMK-3, complete sequence 318826-318859 0 1.0

1. spacer 1.1|318826|34|NZ_CP041206|CRISPRCasFinder matches to NZ_CP041206 (Rhizobium sp. NIBRBAC000502774 plasmid pMK-3, complete sequence) position: , mismatch: 0, identity: 1.0

gacagataccgcgactgagcaaaagtcgtttgct	CRISPR spacer
gacagataccgcgactgagcaaaagtcgtttgct	Protospacer
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Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 12990 8 Rhizobium_phage(25.0%) transposase NA
DBSCAN-SWA_2 21046 : 22102 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_3 26727 : 39666 7 Lactobacillus_phage(25.0%) NA NA
DBSCAN-SWA_4 44356 : 46019 2 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_5 57411 : 58233 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_6 62332 : 75101 12 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_7 86360 : 102741 12 Hokovirus(60.0%) NA NA
DBSCAN-SWA_8 107060 : 109555 2 Leptospira_phage(100.0%) NA NA
DBSCAN-SWA_9 113576 : 118429 5 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_10 125099 : 125777 1 Sinorhizobium_phage(100.0%) NA NA
DBSCAN-SWA_11 135110 : 135884 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_12 140343 : 143319 1 Salmonella_phage(100.0%) transposase NA
DBSCAN-SWA_13 153211 : 158320 1 Burkholderia_virus(100.0%) NA NA
DBSCAN-SWA_14 168033 : 168960 1 Caulobacter_phage(100.0%) NA NA
DBSCAN-SWA_15 179436 : 182196 3 Bacillus_virus(33.33%) NA NA
DBSCAN-SWA_16 185842 : 186937 1 Mycoplasma_phage(100.0%) NA NA
DBSCAN-SWA_17 191058 : 191337 1 Burkholderia_phage(100.0%) NA NA
DBSCAN-SWA_18 202558 : 202993 1 Sinorhizobium_phage(100.0%) NA NA
DBSCAN-SWA_19 206802 : 207573 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_20 218140 : 219058 1 Brevibacillus_phage(100.0%) NA NA
DBSCAN-SWA_21 222243 : 223419 1 Geobacillus_virus(100.0%) NA NA
DBSCAN-SWA_22 233195 : 234014 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_23 237111 : 241981 4 Cotesia_sesamiae_Mombasa_bracovirus(50.0%) NA NA
DBSCAN-SWA_24 254280 : 254991 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_25 268875 : 269625 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_26 276937 : 279768 4 Caulobacter_phage(33.33%) NA NA
DBSCAN-SWA_27 290237 : 310650 21 Indivirus(16.67%) transposase,integrase attL 305917:305930|attR 314314:314327
DBSCAN-SWA_28 315147 : 317632 2 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_29 320977 : 323738 2 Ralstonia_phage(50.0%) NA NA
DBSCAN-SWA_30 330084 : 331893 1 Paenibacillus_phage(100.0%) NA NA
DBSCAN-SWA_31 336005 : 336233 1 Sinorhizobium_phage(100.0%) NA NA
DBSCAN-SWA_32 345319 : 349133 3 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_33 354086 : 358146 3 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_34 366513 : 367605 1 Mycoplasma_phage(100.0%) NA NA
DBSCAN-SWA_35 381129 : 382326 1 Leptospira_phage(100.0%) NA NA
DBSCAN-SWA_36 389865 : 390765 1 Burkholderia_virus(100.0%) NA NA
DBSCAN-SWA_37 397335 : 398548 1 Pseudomonas_phage(100.0%) transposase NA
DBSCAN-SWA_38 401613 : 403012 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_39 408728 : 409211 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_40 417277 : 418921 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_41 424242 : 429059 4 Brazilian_cedratvirus(33.33%) NA NA
DBSCAN-SWA_42 438637 : 439555 1 Burkholderia_virus(100.0%) NA NA
DBSCAN-SWA_43 443670 : 444267 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_44 458516 : 462126 4 Cedratvirus(50.0%) NA NA
DBSCAN-SWA_45 474261 : 479865 4 Brazilian_cedratvirus(33.33%) transposase NA
DBSCAN-SWA_46 495281 : 496082 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_47 503126 : 503399 1 Salmonella_phage(100.0%) transposase NA
DBSCAN-SWA_48 509450 : 510146 1 uncultured_Mediterranean_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage