CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041215	Wolbachia endosymbiont of Carposina sasakii isolate wCauA chromosome, complete genome	16 crisprs	PD-DExK,DEDDh,RT,cas3	8	1	11	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041215_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041215_1

36347-36457

Orphan

Consensus_repeat	Method
CCGCGAACCGTCATACCGCCGCGGTATCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041215_1

>merge|NZ_CP041215|1|36347-36457|CRISPRCasFinder
CCGCGAACCGTCATACCGCCGCGGTATCTCTAGATCCCGCTAACAAGCAGCGGGATGACGAATTACTTAACCGTCATACCACCGCGAACCGTCATACCGCCGCGGTATCTC

>NZ_CP041215|1|1|36347-36457|CRISPRCasFinder
CCGCGAACCGTCATACCGCCGCGGTATCTC	TAGATCCCGCTAACAAGCAGCGGGATGACGAATTACTTAACCGTCATACCA
CCGCGAACCGTCATACCGCCGCGGTATCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041215.1\|WP_141457302.1\|34469_35429_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|372314
NZ_CP041215.1\|WP_141456650.1\|29821_30529_-\|uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|119440
NZ_CP041215.1\|WP_141456651.1\|31482_32901_+\|metalloprotease-TldD	unknown	unknown	gnl\|CDD\|182685
NZ_CP041215.1\|WP_141456655.1\|43344_44361_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223566
NZ_CP041215.1\|WP_153296798.1\|32956_33097_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_141456652.1\|35459_36226_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP041215.1\|WP_041573606.1\|46215_46698_+\|NADH-quinone-oxidoreductase-subunit-NuoI	unknown	unknown	gnl\|CDD\|235637
NZ_CP041215.1\|WP_141456654.1\|41652_42609_+\|beta-ketoacyl-ACP-synthase-3	unknown	unknown	gnl\|CDD\|236475
NZ_CP041215.1\|WP_015589315.1\|36549_37713_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl\|CDD\|235472
NZ_CP041215.1\|WP_015589313.1\|39307_40090_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376777
NZ_CP041215.1\|WP_007548965.1\|37795_38293_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_015589323.1\|25359_27936_+\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NZ_CP041215.1\|WP_141456649.1\|29042_29822_-\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197320
NZ_CP041215.1\|WP_141456653.1\|38613_39315_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213228
NZ_CP041215.1\|WP_141457304.1\|40622_41660_+\|phosphate-acyltransferase-PlsX	unknown	unknown	gnl\|CDD\|235414
NZ_CP041215.1\|WP_015589308.1\|44664_45993_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	unknown	unknown	gnl\|CDD\|235392
NZ_CP041215.1\|WP_041573607.1\|40429_40612_+\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|234901
NZ_CP041215.1\|WP_015589317.1\|33187_34435_+\|IscS-subfamily-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|184450
NZ_CP041215.1\|WP_015589319.1\|30773_31265_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_141457300.1\|27986_29006_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP041215.1\|WP_141457302.1\|34469_35429_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	1.40567e-48
NZ_CP041215.1\|WP_141456650.1\|29821_30529_-\|uroporphyrinogen-III-synthase	gnl\|CDD\|119440	cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.	1.0152e-45
NZ_CP041215.1\|WP_141456651.1\|31482_32901_+\|metalloprotease-TldD	gnl\|CDD\|182685	PRK10735, tldD, protease TldD; Provisional.	0
NZ_CP041215.1\|WP_141456655.1\|43344_44361_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|223566	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones].	4.73014e-69
NZ_CP041215.1\|WP_141456652.1\|35459_36226_+\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	4.72894e-33
NZ_CP041215.1\|WP_041573606.1\|46215_46698_+\|NADH-quinone-oxidoreductase-subunit-NuoI	gnl\|CDD\|235637	PRK05888, PRK05888, NADH-quinone oxidoreductase subunit NuoI.	4.44254e-91
NZ_CP041215.1\|WP_141456654.1\|41652_42609_+\|beta-ketoacyl-ACP-synthase-3	gnl\|CDD\|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	1.01629e-180
NZ_CP041215.1\|WP_015589315.1\|36549_37713_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl\|CDD\|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NZ_CP041215.1\|WP_015589313.1\|39307_40090_-\|ABC-transporter-permease	gnl\|CDD\|376777	pfam02405, MlaE, Permease MlaE. MlaE is a permease which in E. coli is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. In NMB1965 it is involved in L-glutamate import into the cell. In Arabidopsis thaliana TGD1 it is involved in lipid transfer within the cell.	1.80708e-73
NZ_CP041215.1\|WP_015589323.1\|25359_27936_+\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NZ_CP041215.1\|WP_141456649.1\|29042_29822_-\|exodeoxyribonuclease-III	gnl\|CDD\|197320	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Escherichia coli ExoIII, Neisseria meningitides NExo,and related proteins. These are ExoIII family AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiencies. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity. For example, Neisseria meningitides Nape and NExo, and exonuclease III (ExoIII) and endonuclease IV (EndoIV) in Escherichia coli. NExo and ExoIII are found in this subfamily. NExo is the non-dominant AP endonuclease. It exhibits strong 3'-5' exonuclease and 3'-deoxyribose phosphodiesterase activities. Escherichia coli ExoIII is an active AP endonuclease, and in addition, it exhibits double strand (ds)-specific 3'-5' exonuclease, exonucleolytic RNase H, 3'-phosphomonoesterase and 3'-phosphodiesterase activities, all catalyzed by a single active site. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes ExoIII and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily.	2.38361e-126
NZ_CP041215.1\|WP_141456653.1\|38613_39315_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213228	cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	1.39074e-101
NZ_CP041215.1\|WP_141457304.1\|40622_41660_+\|phosphate-acyltransferase-PlsX	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	1.48475e-158
NZ_CP041215.1\|WP_015589308.1\|44664_45993_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	0
NZ_CP041215.1\|WP_041573607.1\|40429_40612_+\|50S-ribosomal-protein-L32	gnl\|CDD\|234901	PRK01110, rpmF, 50S ribosomal protein L32; Validated.	1.37151e-21
NZ_CP041215.1\|WP_015589317.1\|33187_34435_+\|IscS-subfamily-cysteine-desulfurase	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0

>NZ_CP041215.1|WP_141456652.1|35459_36226_+|IS5-family-transposase
MYPSDISDKEWEILEPSVAQGAVGRPRKHNIRTIINAIRYIMKGGCQWRMLPKDFPPWKTVYDYFLRWRNSGKLEEIHNMLVKKVRKMVGKNEIPSVGIIDSQSVKTTQKGDPEDMMPGKKIKGRKRHIIVDTIGLIITADVHSAGIQDRDGALNLFTQAKRKAPTLQRFLADQGYIGKLQNYCLLKTGCLLTITKKAADAVGFQVIPKRWIVERTFAWLSNFRRMSKDYEHSPLTSKTNISFNMITIMLAKLAA
>NZ_CP041215.1|WP_141457302.1|34469_35429_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MFSFSFLFKTGSKFLDPKLDLTFKRIFGTEKNKNILIHFLNDILGFTEINTIQEVEFLSTIMDPEIASDKQSIVDVLCRDSSGARYVIEMQLTRDKGFEKRAQLYAAKAYSRQADKSGKYIDLKKVFFIAISNCNLFPDKLDYISSHTIRDEKTNEHDLKDFQFVFIELPKFPKNKEEQLESIVDRWLFFFKYADETTEEDLRKIAEKAPIIKLAYDELDRFSWNEKDLVAYEERIMDLRKEEAILEYRLDLATEKGIQIGEERGIKIGKEEGKIEGKIEGKIEVAKAMLANNVDVNTIVKFTGLSISEIEELSVNGTE
>NZ_CP041215.1|WP_015589317.1|33187_34435_+|IscS-subfamily-cysteine-desulfurase
MNVESKKIHDAKIKLPIFLDYQSTTKVDPRVLEVMIPYFGEFSNAHSRSHSFGWTAEEAVEKARKHIADLVNADSKEIIFTSGATESNNTAIKGVAHFYKNKGNHIITVCTEHKCVLDSCRHLENEGFKVTYLPVKQNGIIDLLKLEEAITDKTILVSVMMVNNEIGVIQPVKEIGEICRKRNIFFHTDAAQSFGKVPIDVNEMCIDLMSLSSHKIYGPMGIGALYVRRKNPRVRLIPLISGGGQERGMRSGTVPTPLAVGFGEAARIAKEEMKKETTRVEELRDILYNKIKEAFPDIVLNGDYENRIPGNLNLSFPYVEGESLIMAIKDLAVSSGSACTSASLEPSYVVRSLNNGHDLEHSSIRFGLGRFTTKEEVLYAADLVAKNVGRLREMSPLWEMVQEGVDLNTVKWDSH
>NZ_CP041215.1|WP_153296798.1|32956_33097_+|hypothetical-protein
MEAIATNRVSSQCLGTAFVFEAKLAITFNTLLSQINVRTVMCQLLG
>NZ_CP041215.1|WP_141456651.1|31482_32901_+|metalloprotease-TldD
MPNLDQIFFAQNNVNINNVYKIVNNALSNSDGGELFLEFCQSESLVFEDNILKHMDLNTRRGFGLRSFCEDSTSFVCSSEISEKEISNAASMVKSSVSLNKTNSINLNEETKSLYSRINPINEMDLNSKIKLLNEVNEYVRSKNNCVKQVKITLSGEWQVVQIIKGDHRLSDIRPLVRFNVLVIVEKDGRTERGSAGHGGRDSYSKFISEKKWKEVANQALEQALVNLEAIPTPAGEMTVVLGPGWPGILLHEAVGHGLEGDFNRKKVSAFSNSVGKQVAASDITVVDDGTLPNLRGSISVDDEGTPPSYNILIEDGILKGYMQDHMNAKLMGVSPTGNGRRESYKEVIMPRMTNTYMLPGKYTPKEIISSVKKGLYAVNFGGGQVDITSGKFVFSSSEAYLIENGKITQPVKGATLIGDGQTVLKKVSMVGNDLKLDPGVGTCSKDGQNVPVGVGQPTLKVDAITVGGTEI
>NZ_CP041215.1|WP_015589319.1|30773_31265_-|hypothetical-protein
MYSEKNKLACRKKVRTYSKRLVTTLSTISFIGYIAALVLNIPVLSLYFSIACTILSVLSSTLNIWSLADHFRQRDLNKQLGVENTPGQEKLTKICLDITSNVLFLIGGITPILPFESPIIPFVSTAFFILGCAFMATNIVRTRISEPQAKKPTDDHSLTAKAA
>NZ_CP041215.1|WP_141456650.1|29821_30529_-|uroporphyrinogen-III-synthase
MKSILLTRPLLDSFNTRNILRKYGYKVFIEPVFTIKYLNPDISAYEFDVVISTSKNSVKALSQICKEDDFPIITVGNSTMQAAKNLGFSDIISADSNVDGLISFIKAHYSNAIKFLYIRGQEVSCDLKKRLSEEDFNIREVVLYKTIIKRSLTNRCKNLLLDGKIDSVAFFSSQTARVFCSLVLKSGLSHVMSNITAYTMSKNIADSLKLIKWKKIITSRLPTGESLIDIINKDC
>NZ_CP041215.1|WP_141456649.1|29042_29822_-|exodeoxyribonuclease-III
MLKIATWNVNSIRKRVNQLCSFIVDSQVDIILLQEIKCTEEQFPYAEIEKLGYEYAIYGQVARNGVCVLSKYPILEKFKIDIVESHQEARYIECVIKHTNHKVRVGSVYVPNGQSPDSQAFEYKLKFFDNLYERMSTLLKNEELTIIAGDYNVAPDEIDVFDSNLLNGQVCFHIREREKLRAILNLGFKDAFRISHPNLQQFTWWHYQGNSLRNNQGMRIDYMLLSPQAVDKLETCYIDDRLRKLENPSDHTPVVCAIE
>NZ_CP041215.1|WP_141457300.1|27986_29006_+|hypothetical-protein
MTKILTPQTKNLEPSNQVTNKDEKIFEKEEHQVIYDYFVKVLEGKAELKENKEITDYFISAYKDILLNNVNPKDIKPLSEENFSQFLLSVFEKIREKKLANEENLKNGKIKEVVDDCVADIRGTEAKDSSIKFVLEMLLLIGGIKIDPKNISGSFMDGMKEKIPFLGKDKKEEDEPPLSDEEMVTTFLSKIFFPVLLSTIPMLIFGPTTLGVVLTAIGTIFAIKGGVEVLFSNNKKGTLYDPSSQDKDDTEKRAKLNGKILEGIDDILKTPVTEVEKGTSVSEQISQGKEKSEQQPVPEQISQENNRGNEESKQQDQPWTRKENKRREENTSNKQAGIT
>NZ_CP041215.1|WP_015589323.1|25359_27936_+|DNA-polymerase-I
MKEKTFTIIDGYGFLFRAYYVLPHLITTTGMPIGGVYGFLNMVLKYIAHSDYLTIALDAGKKNFRHDLYPEYKANRVTPPEDLTPQFTILREAVEAFNLSYEEIEGYEADDIIATLAAKYANHQDFKVVVVSSDKDLFQLLNHNILIFDPIKNIYIDEKQVIEKFGVNSHKLLDLFSLTGDASDNIPGVPGIGPKTAAKLLDEFDSLNNIIENIDNIEQTRIRNILTEHKEKALISRELLSLCEKVDLQHDIAKYEVHSPNMEKLLSFLKKYEFNSLIGKMEKLFSYNGSSTKEKIEYSSEELEKFLEHCRYEGRIAIHCHFEDNLLNKISLSYSESNIFYIEQDSIQDALITINSTLLSNGVLKIIHNIKEIRKIFPAIEKMLDSVDDLMIMSYSLDTGKHDHSIPNIVAHNLSGDVEIFSAKTLIAIREKLKQRLFQEKLFTIYERFDKPLMKVIFDMEKNGILLNIQKLQELSDKFQQVIAVLEDEIYNLAGERFNIASPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEALEEEGVEIASKILNWRHLSKLKGTYTDALIKQVDSIDGRIHTSFSTTATATGRLSSSNPNLQNIPIRSEEGNLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAFKEAFANGQDIHEITARQVFGVQEIDEQLRRKAKSINFGIIYGISPFGLAKRLGITIAEAAEYINYYFSCYPEIKAYMEKAVSIARLHGYVETLFGRRCFVRDINNTIPYIRQFAERAAINAPLQGTAADIIKRATIQLFDQLKVGKIILQVHDELLVEVEDEKVQETAKLVKNIMEGVVEISIPLEVEIKVGDNWALNYDLNMADSKSIDYLN
>NZ_CP041215.1|WP_015589315.1|36549_37713_-|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MKKVSVLGSTGSVGKKTVDLLSKRKEEYQVEALSAHSNFALLAHQAKLLNAKYVAISDERLYKDLKENLLGTDVKIAIGATNIATIPVDLSVVAIVGIAGLEPVMEVIESGTKVIALANKESIVCGGKLLLKKAKEKNVQIISIDSEHNAIFQILQNDDKCIEKIILTASGGPFLNYSSEQLRNVIVDQALSHPTWNMGKKISIDSATMMNKALEIIEAHNLFNISPDKIEAIVHPESIVHGIVTYKDGFNFAVLAETDMAIPISYALSWPERSALNRKLDLTKQGKLTFQEPDHKRFPALKLSMAVLNSSAPQTNSIVLNAANEIAVNEFLKSRIGFLKIVEVVESTMESFDSYTDINSLSDIINIDCESRIIAHKIVESKVVAYS
>NZ_CP041215.1|WP_007548965.1|37795_38293_-|hypothetical-protein
MSEAQGPNIAEWQAQQQHQEAAGEKSGFGLGHSDSVSTVVDGMKWLFNFHEGAIAAYSNVFEGLVSGSSLVTLFGKSGNMFGIKFLEGLAEYFSGGGGEDMPSEGMDMAHGDDGHHSDDYPHANNEIAHNADGLQDMHDAGDHHGQSFSPGPSPSVGDDHGHELG
>NZ_CP041215.1|WP_141456653.1|38613_39315_-|ATP-binding-cassette-domain-containing-protein
MRNPIISILNLRLSFDDRTVLKDLNFDILKGESLVILGGSGSGKSVLTKTIIGLLAPDSGSVKINSKSKNKFGVLFQNSALFDYVTVWENISFNYKKRFNISKKEAKQLAIEKLNDVGLEESIADMFPIELSGGMKKRVALARAIAHNPEIIILDEPTSGLDPIMSDIVNEIIIKLSRDLNPTIITITHDIHSAFKIADKIAVLYEGEIISHGTVQEIQNTNNEYIKKFIHYI
>NZ_CP041215.1|WP_015589313.1|39307_40090_-|ABC-transporter-permease
MSFFDINSVRIIGRYFINFLLRLGSAFIFFIQSLYHCLVPPYYFSNIARQIIEIGFFSLPIVGLTGVFIGAAIVLQSSLSDPLINQEQIIPKLVTITIIKELGPVLISLIMVGKVGSSVAAEIGTMRITEQIDALTTLNINPFKYLIAPRILASIIVFPILTVCADLIGIFGGCITAVFEFNHNLNIYIKHTAQFFNTYDFITGLIKATVFGAIISVSSCYYGYHCKEGARGVGVATTSTVVLSSILIILANYMITLIHA
>NZ_CP041215.1|WP_041573607.1|40429_40612_+|50S-ribosomal-protein-L32
MAVPKRKKSKSRRNMHRSHHAIEPKNIVVCSTTGEFMLPHNVAVDGSYKGKRVFIKQQAE
>NZ_CP041215.1|WP_141457304.1|40622_41660_+|phosphate-acyltransferase-PlsX
MLPTVNNNIVIALDAMGGDFAPLSVIHGAGFFLDNLVDPGIKVFFHIYGDKEEVSPLLSKYKKVSNNSEFTHCSDNVLANDKPSFALRHRKDSSMKAAIEAVKKGKAFGVVSSGNTGALMAISRFILGTLPNIYRPAIVSICPTKTKSFALLDLGANVDCNADSLFQFALMGSIFAKIALKIDNPEVALLNIGTEEVKGNDSVRGAFELLKNAPGINFKGYIEASEFLEGSIDVIVADGFVGNVMLKTAEATASTFINLIKQEVFNSWIAKMLVGILLKSKLNKALTRFNPKIRSGAMFLGLNGIIIKSHGNSDAISFAHAIKFAVNAISENLNQKIINGVSHIE
>NZ_CP041215.1|WP_141456654.1|41652_42609_+|beta-ketoacyl-ACP-synthase-3
MNKSFILSTGSYLPRKMLSNNEIASIVETSDEWIRQRTGIVQRHIADEGELTSDLAVNAAKSAIEKAKISVDEIDLIIVATTTPDKTFPSCATIVQSKLKCKNAFAFDVQAACSGFIYAVTVADSLIKSNNRIKYALVIGAEIMSRIVDWEDRSTCVLFGDGAGAVVMKSEMGRSGIISTNLYSDGNVDILCTNGGVSSTGDSGKICMNGREVFKHAVDKLTASVEETLKCNNLKITDIDWLIPHQANIRIIEAVVKKLDFPIEKVINTVDKHANTSAASIPLALDYAIQESKIKSGNLVLLISIGAGLTWGSVLLHY
>NZ_CP041215.1|WP_141456655.1|43344_44361_-|FAD-dependent-oxidoreductase
MKTDIVIIGAGPVGIFTAFQAGMFDMKCHIIDVLDQAGGQCTALYPEKPIYDIPGYPVITAQKLIEQLMEQASPFKPIYHLSQKVEKISNNCDQSFIIITNTGTEVKCKAVIVAAGNGMFEPNRPPLNGILEYENKSVFYSVNKISDFQDKTIVIAGGGDSAADWTVELSKVAKKIYVIHRRKEFRCTPETRNKLESLESDGKIELVVPYQLHELAGGNGQLSTVIVKNIASKEEKEISADFLLPFFGLSMNLGPINNWGIQLEHSRIVVDPATLKTSRDRIYAIGDIAIYSGKLKLILSGFAESAMACHDIYKVIHNSPVNFQYSTSKGIHGKEKLP
>NZ_CP041215.1|WP_015589308.1|44664_45993_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE
MTNTNETIFALSTVFGKSGVAVIRISGNYALKALNHFHIKKEIKPRFATLVDLYDDFNQLIDNGIIIYFPAPNSFTGENVIELQVHGSKAVIKIILEELSKIFVMARPGEFSLRAFLNGKFDLTQIEGIADLIDAETKMQAKQAIKQISGELERLYSNWRQRLITIQSKIEAYIDFPEDIWAEKSELEKINNEVQSLVRLIQEHLNDNRRGERLREGLHIVITGKPNVGKSTLFNFLAKRDIAIVSEYAGTTRDILEAHIDIGGYPIILSDTAGIRESSDPIESEGISRAKKRSFEADLRIELFPFEQRHNINCNVVNSDTIYVLSKADDVINNHNIKINGIDLLPISILKEIGTNKLISLIKEKAEEKFGHDRDTPVITRQRHRNHMKKALEHLQRFNIDNPIELISEDLRLAAFELGAVIGIIDVEEILSSVFSNFCVGK
>NZ_CP041215.1|WP_041573606.1|46215_46698_+|NADH-quinone-oxidoreductase-subunit-NuoI
MLKKLAWYWSFAELIKGFAITLKYMFKPKVTLRYPMEKGPLSPRFRGEHALRRYPNGEERCIACKLCEVICPAQAIVIEAEEREDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPNFEFATETREELMYNKEKLLRNGEIWEDAIALRLKKNRPYY

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Crispr_ID: NZ_CP041215_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041215_2

230427-230627

Orphan

Consensus_repeat	Method
TCGTCATCCCGCTGCGTGTTAGCGGGATCT	PILER-CR
AGAGATACCGCGAATGAATCGCGGTATGACGGT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP041215_2

>merge|NZ_CP041215|2|230427-230627|PILER-CR,CRISPRCasFinder
CGTCATCCCGCTGCTTGTTAGCGGCTAAGAGATACCGCGAATGAATCGCGGTATGACGGTGTAATGATGGTTAAGTAATTCGTCATCCCGCTACGTGTTAGCGGGATCTATGTTGAGAGATACCGCGAATGAATCGCGGTATGACGGTTCGCGGCGGCATAAAGATAAGTCTCGTCATCCCGCTGCGTGTTAGCGGGATCT

>NZ_CP041215|2|1|230427-230627|PILER-CR
CGTCATCCCGCTGCTTGTTAGCGGCTAAGA	GATACCGCGAATGAATCGCGGTATGACGGTGTAATGATGGTTAAGTAATTCGTCA
TCCCGCTACGTGTTAGCGGGATCTATGTTG	AGAGATACCGCGAATGAATCGCGGTATGACGGTTCGCGGCGGCATAAAGATAAGTCTCGTCA
TCCCGCTGCGTGTTAGCGGGATCT

>NZ_CP041215|2|2|230454-230574|CRISPRCasFinder
AGAGATACCGCGAATGAATCGCGGTATGACGGT	GTAATGATGGTTAAGTAATTCGTCATCCCGCTACGTGTTAGCGGGATCTATGTTG
AGAGATACCGCGAATGAATCGCGGTATGACGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041215.1\|WP_010081889.1\|225449_225929_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_CP041215.1\|WP_141456699.1\|218314_220033_-\|potassium-transporter	unknown	unknown	gnl\|CDD\|235131
NZ_CP041215.1\|WP_012673393.1\|222125_223964_-\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	unknown	unknown	gnl\|CDD\|273520
NZ_CP041215.1\|WP_141456701.1\|223976_225272_-\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|238950
NZ_CP041215.1\|WP_039963709.1\|237721_238030_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_141456705.1\|238032_239868_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|223839
NZ_CP041215.1\|WP_022626165.1\|236838_237546_+\|isoprenoid-biosynthesis-glyoxalase-ElbB	unknown	unknown	gnl\|CDD\|236980
NZ_CP041215.1\|WP_141456702.1\|226204_227626_+\|carboxypeptidase-M32	unknown	unknown	gnl\|CDD\|376724
NZ_CP041215.1\|WP_015589482.1\|239888_240818_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893
NZ_CP041215.1\|WP_141456700.1\|221302_221971_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_015589477.1\|235071_235623_+\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|274270
NZ_CP041215.1\|WP_015589468.1\|220038_220611_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239267
NZ_CP041215.1\|WP_015589478.1\|235667_236702_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_015589474.1\|230760_231984_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_141456703.1\|227649_228726_+\|rod-shape-determining-protein-MreB	unknown	unknown	gnl\|CDD\|237562
NZ_CP041215.1\|WP_015589476.1\|234467_235088_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|99789
NZ_CP041215.1\|WP_141456704.1\|233218_234364_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|372652
NZ_CP041215.1\|WP_015589469.1\|220719_221310_+\|dTMP-kinase	unknown	unknown	gnl\|CDD\|237574
NZ_CP041215.1\|WP_012673395.1\|232046_232562_+\|inorganic-diphosphatase	unknown	unknown	gnl\|CDD\|179262
NZ_CP041215.1\|WP_015589473.1\|228928_230032_+\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664

Protein	Function_ID	Function_description	E-value
NZ_CP041215.1\|WP_010081889.1\|225449_225929_-\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	1.17117e-31
NZ_CP041215.1\|WP_141456699.1\|218314_220033_-\|potassium-transporter	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	2.00927e-127
NZ_CP041215.1\|WP_012673393.1\|222125_223964_-\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP041215.1\|WP_015589482.1\|239888_240818_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	4.37981e-158
NZ_CP041215.1\|WP_022626165.1\|236838_237546_+\|isoprenoid-biosynthesis-glyoxalase-ElbB	gnl\|CDD\|236980	PRK11780, PRK11780, isoprenoid biosynthesis glyoxalase ElbB.	1.32121e-113
NZ_CP041215.1\|WP_141456702.1\|226204_227626_+\|carboxypeptidase-M32	gnl\|CDD\|376724	pfam02074, Peptidase_M32, Carboxypeptidase Taq (M32) metallopeptidase.	1.83782e-87
NZ_CP041215.1\|WP_015589477.1\|235071_235623_+\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|274270	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism. [Central intermediary metabolism, One-carbon metabolism].	5.54285e-39
NZ_CP041215.1\|WP_015589468.1\|220038_220611_-\|thioredoxin-family-protein	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	1.18534e-73
NZ_CP041215.1\|WP_141456705.1\|238032_239868_-\|penicillin-binding-protein-2	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	8.48414e-86
NZ_CP041215.1\|WP_141456701.1\|223976_225272_-\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|238950	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.	7.46813e-78
NZ_CP041215.1\|WP_141456703.1\|227649_228726_+\|rod-shape-determining-protein-MreB	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NZ_CP041215.1\|WP_015589476.1\|234467_235088_+\|hypothetical-protein	gnl\|CDD\|99789	cd06192, DHOD_e_trans_like, FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.	3.81086e-36
NZ_CP041215.1\|WP_141456704.1\|233218_234364_+\|peptidylprolyl-isomerase	gnl\|CDD\|372652	pfam13624, SurA_N_3, SurA N-terminal domain. This domain is found at the N-terminus of the chaperone SurA. It is a helical domain of unknown function. The C-terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment.	3.48359e-08
NZ_CP041215.1\|WP_015589469.1\|220719_221310_+\|dTMP-kinase	gnl\|CDD\|237574	PRK13976, PRK13976, dTMP kinase.	1.36677e-121
NZ_CP041215.1\|WP_012673395.1\|232046_232562_+\|inorganic-diphosphatase	gnl\|CDD\|179262	PRK01250, PRK01250, inorganic diphosphatase.	9.03463e-92
NZ_CP041215.1\|WP_015589473.1\|228928_230032_+\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	1.28313e-179

>NZ_CP041215.1|WP_015589473.1|228928_230032_+|tRNA-2-thiouridine(34)-synthase-MnmA
MLKEFEIEPLLKDKAPHQTKAVVAMSGGVDSSVAAALLYNFGYQVIGVTLQLYGTDGARKGACCAGQDIYDAKRVAESVGFPHYILNYEEIFKKEVIEDFASTYMRGETPIPCVRCNQTVKFRDLLQVTKNLGADVLVTGHYVRRLEKNGEVKLCRSIDKSKDQSYFLFATTQEQLKLLRFPLGGFYKSDIRKLAKYFGLQISEKPDSQDICFVSESYSKTIAKLAPQSVQKGKIVDVNGKVLGEHSGIVNFTVGQRKGLGIAHNEPLYVIKINTENNEVIVGPINVLMQKKILIKELNWLEQPKEGMEVTVKLRSSHAGSLATIHSTDEKNKACVILNDDYFGISPGQACVAYKDEQVIGGGWICS
>NZ_CP041215.1|WP_141456703.1|227649_228726_+|rod-shape-determining-protein-MreB
MNFVRKLTEKFCSLFTFKGLFASDIAIDLGTANTLVYQKNQGIVLDEPSVVARIKEKGSYVPYAFGKKAKMMLGKTPGEIEAIRPLKDGVIADFKSAEEMLKYFIRSANTKFTVNKPNIIICVPSGSTPVERRAIQDAAESAGANEVFLIEEPMAAAIGAGLPVTEPEGSMIVDIGGGTTEVAIISLGGIVYSRSARVGGDIMDEAIKSYIRENHKLLIGETTAEKIKKSIGSANLPGENNKEGMIIKGRDLVSGMPKEMLLSEYQVAESLIEPVHQIISAIRTALESTPPELSSDIVDKGIILSGGGGLLRNLGKVISETTKLPVRVADDPLCCVALGSGKVLENMDYFGHVLFKQD
>NZ_CP041215.1|WP_141456702.1|226204_227626_+|carboxypeptidase-M32
MKSYKFLEEVLYRVKNIENTLKVLNQSQLNAEDKVEQMSLLEEIRHEIISHDVIKESLADALDNKKSADAWQLKLIERIHKSNSAVPIDLVKSLSKAKVECQSLWRLNNSEASNLEKLKERFTDLITLICEVASIKSQQLKCSKYDSLLADYDSDITEKNIREVFPKVGKFFSGNVDKIIEKQKKDKVTNIQKVATQKQIELGSSCLQQMGVALHEVRTSYYYPIDYDESDFCYGLFSLLRHSGYAIYQKCLAQNSISSPITRHVMYETQGLFMERMIGTSREFIEFIQPHIKEKFAIKGKTNEKVSSVENLYLIFNEINLSSFLKNADEFSLLAHIMLRTRLEQDIINGTLEVKDLHDAWLEGMKHYKIPVKAENELNTYFQDEYWASGVMGYFPIKIIALIAAVQIFSCVKKNHYESLSAIIKGDFSLLISWLSQNIYSAKCGLELLKKVTGKGLDVECCISYLSGKYNLS
>NZ_CP041215.1|WP_010081889.1|225449_225929_-|OmpA-family-protein
MWSRLVIMCCFCLLLTGVSSCPKKGANTTNKINSVVKQIGDKRVFFGYDESSIAEVSADALLDVMEVLQDNPDAKVTLTGHTDNRGSHEYNLALGARRADAAKKFMVSCTPYIENRIKTASKGETEPLVNVKDDSRNSKYEKEHAKNRRVEFSFSGIKK
>NZ_CP041215.1|WP_141456701.1|223976_225272_-|tRNA-lysidine(34)-synthetase-TilS
MELELLFQNVVNSFAFYNNQVAVAVSGGVDSIILLHLMNNWAKKNKLPLPIALTVNHGLRSESQKEADFVVSYAKELGAKESFILNWEKQNIKGNIQLQARKARYKLLAEWCKNNNVKYLLVAHHKDDQAETFLLRLERGSGVDGLSSMDYKSFLNGIYIFRPLLNFSRSEIEKYAKLHRLKWIEDRSNYDLKYRRTLYRNLLKASDNQEILTERICLTALHMKRAAKALMHYTRLAFNDCVNVHDLGYIEIKLSEFYQLPEEIALRLLLYSIMAIASKHYKPRYNSLIVIFNKILQKDSNVNCTLSRCKIRKHGENILIIRESSKIQEITLNLPLNEPTQWDNRFSCTILGNQECSVIIAPLKKTQKVPEFLKDYNCCPEVFYSLPVVLKDGKVLAYPDVNYNGKNTNDDKVQCIINSTIKQNLVSLISI
>NZ_CP041215.1|WP_012673393.1|222125_223964_-|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein
MKKFLEGLLIWLVIIVLISVAYIQFSGNVGKSKTIIPFSEFLTRLEDNDVENIVIKNQSIEGKFRDGSSFNSSGVIYSDLIKNLHDRKVRFSFSTGDSAMNVIGGLLISWVPTFIFIGFLLFFLKQTQAGGNRTISFGKSRARLMTSGKKVTFDDVAGIDEAKEELVEIVDFLKQRQKFQILGGKIPKGCLLIGSPGTGKTLLARAIAGEANVPFFSISGSDFVEMFVGVGASRVRDMFDQGKKNAPCIIFIDEIDAVGRHRGIGLGGGNDEREQTLNQLLVEMDGFESNEGVIIIAATNRPDVLDPALLRPGRFDRQITISLPDINGREKILNTHIKKISIAPDVNVKTVARGTPGFSGADLANLVNESALIAARRNKKIVTMDDFEYARDKVMMGVERRSLIMTEEEKRLTAYHEAGHAMIAVNMPASDPIHKATIIPRGRALGLVMRLPETDRVSLTREKMLADITVAMGGRVAEELIFGYDKVTSGASSDIKQASDLSRAMVTKWGMSDKIGPIYHNREQTIHGSEIISEDTLKLIDEEVKKVVSSCYEKAKDILTKHKKGLDLIAENLLEFETLTGDEIKDILNGKKIVREENEKNEKIKKSSLYES
>NZ_CP041215.1|WP_141456700.1|221302_221971_-|hypothetical-protein
MIDIASIGVSTVIDQNYRRKAQLCLSGLFVTVSIATVTWFIFPASQNVLAPFLLPAMFLLFTLSMGYYMFIFSCEEKSLVKNVLGMVEPAESVKRVHCQENIKSLSAEVRSTTKDRFRNVLVNLCFEDRSKAHKLALYVKEIDNIVSSIKNKDLLDHFDQFFTITEVSNKKNRSELMNLARAYKMISEEDPDKIQDFLATQTKSYSYEIMLPEIDNFLSQAR
>NZ_CP041215.1|WP_015589469.1|220719_221310_+|dTMP-kinase
MFITFEGIDGSGKTTQSKLLANHFKQIHGENNVVLTREPGGTNFAEKIRGVLLTNNIDPISELLLLISMRREHMKKLILPALAEGKIVICDRFIDSTIAYQGYGLSVDLGLIRDLHKLVEIKCPDITFILDIDVKVGLNRAKDKNKYEEMDVNFYNKVRKGFQEIAIKEPVRCSVITGIETKNDNHVHNEIIDKIT
>NZ_CP041215.1|WP_015589468.1|220038_220611_-|thioredoxin-family-protein
MVALNTPKVDFSFTAKDFNLLGVDNKYYTLSDCCGKNGLIVMFICNHCPYVQSIISNLVSDVDQLKKDYQVNTIAIMPNDVNEYPEDSFENMINFAKENKFTFPYLIDSTQKIAKEYGAVCTPDFFGFNSNLNLCYRGRFNNAKKEKVQSYEVGSSDLFQAMKFIAETGNSPIDQKSSIGCSIKWSNSTG
>NZ_CP041215.1|WP_141456699.1|218314_220033_-|potassium-transporter
MHSGSQHLFDIIILLSAAVFIVIAFWKMNISPVLGYFVAGAVIGSHGFNLIHSAEAMDNLAEFGVVFLLFIIGLELTFERLIAMRIHVFGFGSLQVIVTMVAIWCIALAFGVNTNIATVIGGGLALSSTAIVLQVLQEKGSQASQVGRLSIAVLLMQDFAVVPLIVLVPLLTGNSEHSLISSLAGSLVQAAIALVLIFITGRLLLRPLFSVIAKMESNEIFISTTLLIVLGAAFITEQFHLSLALGAFVAGLLVAETEYRHSVEHAVLPFKDLFLGLFFMTVGMSINTELLLNKLPLITLLSIILIVLKTSIIYILCRFFGFKSAPAIQAGLLLSQGGEFAFILFRLADELNVLPSEIAQVLMMVTTVTMAFTPLLSGLGDWIANSFSTEKTILDDEAVETDTQDLYNHVIVAGFGRVGYMVTKMLTAEHLSYVVVDIQSKIVKEGKSDSFPIYLGDVTRCEILKSVGIERAQALVISIKNEVTIKKVVSLVAANFPHVNIVIRLPDLSNVEVYRDLGASKIIPETSEIGLQLGGAALSLSGISESGVMSLKSRFRKGNYSMLKDLGSDKDE
>NZ_CP041215.1|WP_015589474.1|230760_231984_+|hypothetical-protein
MIKEIEELIKIVGKGNLLETLFIFLGSFQHADLGRFMDHRNHFGLSEFIRKKEEPLDKYFNLKFSLQGLFLIYAQAYQILSENNNLNTKDVIDKIYEVIKGSELNEYINEVVDGRKLDLLNILANPKREPIFKTEEDFENKVLIGLRKLLSEGNTLNKYDREFALNKCVIGCYYSIHNIKVDKDIALLFSIGSYYKELSPSNKTVRREVLEICENQLIENYIVHLASKLHMIGLSSRDKYTIDHENVDRQEKALKMDGLTCPINTKNTLEQLLKNQNSDEFEQLVMSPENIYYSVLPEENEYRPNLITSKKKEKDYKNTVCKLILGMFILSVGLSVADYFLMEQKLLNSIKNVLPQDNLTNLIIGAVLTIVIVYALFQLLKPPQEPPLSTVNKMMNENLGPLHAKQA
>NZ_CP041215.1|WP_012673395.1|232046_232562_+|inorganic-diphosphatase
MDLSKITAGPNAVNVVIEISANAEPVKYEFNKEFGLLQVDRFLSTSMTYPCNYGFIPNTCAGDGDPVDVLVLTQFPLASSVLISVRPIGALLTKDEKGEDEKILAVPVSSVDSYYDNIKDYSDLSKSLLDKITHFFSHYKDLEKGKTVAVGEWVGVEEAKQIVASSIKSGN
>NZ_CP041215.1|WP_141456704.1|233218_234364_+|peptidylprolyl-isomerase
MHKILILLLIVLPLRLLAIEIEIVADVNGEPISNLDIEKRINFINSLFGTQSVDQKGAKPQILRELIDEIIIINEAQRLNIKLSNEELDNAIMLFLTQSFKLKANEVDQYIEKHNIDLGILRKQIKCQLLWSKIIEVRIVPFINISDKEVNDVKRQTEKPDYLITFQEFIIPDQKDKDVYGIAEDLVKKLRNSNNPESPIKMRKATVNLSQLKGKLKNVLEGLETSDIAGPFSFSEGYSVIKVIDKVQLNHALLESTLKLKQIVVEGSESLLDNLKEQKVNCLNFDKLADNFKLPNAKEFEIKMRDLNPDLQILFSKTSVNEIVELRENGTAKLMMLCDIKSNVAGIEAIKQKMYQQKIMIQSNLLLDDMRKNAAISYRYS
>NZ_CP041215.1|WP_015589476.1|234467_235088_+|hypothetical-protein
MKNIMLIGGGVGNAVLFSIGKACLENNNKVLYFAGYKKLSDVFKRALIERASNAVVWACEEGLIETSRDQDKSFHGNIVDAIVSYQQGRLGINLNVIDKIITIGSDKMMKAVNEARKTILKPYLKSSHIAISSVNSPMQCMMKEICAQCVQQHINKETGERSFVYSCSNQDQDMEFIDFDFLSERLKQNSLQEKLTAKWIDHVQRY
>NZ_CP041215.1|WP_015589477.1|235071_235623_+|5-formyltetrahydrofolate-cyclo-ligase
MFKDIKQHKKEIREQYRAIRKDIDESYSSYAANSLINLFNQNLSYVKGKTIAAYIPMDGEINVVPLMHSLLDLDYKVAIPNKNKLLKFEEWNKTNEDVIPDTIITPVIAFDDHFNRLGFGGGWYDTMIEKLRPLGKIFIGVAYEKQYCKDLPVEKHDQKLDIIITEMCVRCGSGLLKKVDKKE
>NZ_CP041215.1|WP_015589478.1|235667_236702_-|hypothetical-protein
MESSNSMFFDTDYPELRKAISDIIESIAQSSQEGKKELFTTLSEQVKGMNLKDLGLAINDQGLQKEVNKELFIKLIEEALKDLTSENVNSKIIEEALKSVNQQAISNVINNNKGPLDNLVNYFKSASANEKIGIASAGMVLGVAFSPLIVLATLIALVAIGARYVGIGIGKAGEKIKEGAIDAGKAVKSLSKNLGDKLPEVGPKKDNFSKLYNSLAQEIIGYNMSEEGEKIKNAQSKAKVIGMLQNEGQRSAIQELVKNGTIQNFSEDDMKKLREKGTSTYESDKEALEELMEKFQSKIMAIGEGKIEEVEKIVDEKVAAMKPSSHLGISSAARVSEGGITGPS
>NZ_CP041215.1|WP_022626165.1|236838_237546_+|isoprenoid-biosynthesis-glyoxalase-ElbB
MGEKKLKAAVVLSGCGHLDGAEVREAVLSLLVLDQQEVDVKCFAPDINITQVMNHRTKEATKEKRNVLVEAARIARGEIYDLKEAKAENFDMLVVPGGYGVAKNLSDLAESKDMVTVMPEFERLVSEFFVTKKPIGAICISPAIIVSILSSKIGKEESKVKVTIGDDREQLIERLGGEHIKCDTELSIEDEEHNVFSCSAYMRSDESTYSVYQGIKHMIDSMVKKINKKTKQPFL
>NZ_CP041215.1|WP_039963709.1|237721_238030_+|hypothetical-protein
MSDLFYIETTCCVDGQCDVYTGEVSFNDVMLGKFSLNSCSGKEAMINLDIITFDINIAIDGQNGKTIKKDLKGLEFVTKDDGSWYINKDFGNDKFEIIVKQS
>NZ_CP041215.1|WP_141456705.1|238032_239868_-|penicillin-binding-protein-2
MQALLKNKLRSLCFIVPLFIFYIIIIFRIFSLTFDQPTTSENFRKDNIVHKQPDILDRNGVVIATNVPTTSLYIDATKVKNPDSIAAQLCSTLHDLEYKNLYRVLTSEKKFAWIKRHLTPKELLAIKNAGVPGVNFYDDIKRIYPHSNLFSHVLGYTDIDGNGIAGVEAYISKNKQHSVIQVPDIQLYECCNLKAIPAQQFPTQQIQCVTLGSRYKNTDKLRDEQRIPETYVKNNVCDEIAHKTGFQCQCTGMTPDQASAQSSVIRQGWSRSADQYVQLSLDTRVQSIVHEELTKAVSRYQALGGVGIVLNVRNSEVISMVSLPDFNPNLQNKAEDVQKFNRASLGVYEMGSVLKYFTIAAALDANATKTSDLYDVSTPITIGKYKIQDFHKSKIPKITVQDIFVKSSNIGAAKIAVKLGIEKQVEYFKAMKLFSPLKIEIPEKSTPIIPDKWSENTLITASYGYGIAVTPIHLAQTAAALINNGIFHNATLMLNKRSIGEQIISRRTSREMRKLLRAAVTDGTGRKAKIKAYSIGGKTGSAEKVVDGKYSKDANIASFIGVLTMLDPRYIVLIAIDEPQGMHHTGGVIAAPIVRNIINRVAPILNVTPEM
>NZ_CP041215.1|WP_015589482.1|239888_240818_+|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MEIILAEPRGFCAGVKRAVDILAITLEKYKNERQVYVLHEIVHNKYIVEDFKKQGVVFVSSIEEIEDNEGILIFSAHGVSKNIEDEAKRKGIQVIDATCPLVSKVHKEAKRYENSGKELILIGHENHPEVKGIRGRVNNPITLVQTLQDVYDLKVKDPDNLSYVTQTTLSIDDTHEIIVALKLRFPSITGPDLKDICYATQNRQNAVKKLAEIVDMVLVVGSKNSSNSNRLLDLCTAREKRAYLIDNYRCVNKSWFQGVEKIGITAGASAPDILVDELMDYLKVNLSVKISVMPGGIIENVQFKIPNLV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP041215_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041215_3

401848-402106

Orphan

Consensus_repeat	Method
NNCTACGTGTTAGCGGGATCTAGAGATACCGCGA	CRT

3 spacers

The CRISPR arrays of NZ_CP041215_3

>merge|NZ_CP041215|3|401848-402106|CRT
CGCTACTTGTTAGCGGCTAAGAGATACCGCGGCGGTATGACGGTTTGCGGCGGCATGACCTCGTCATTCCCCTACGTGTTAGCGGGATCTAGAGATACCGCGAATGAATCGCGGTATGACGGTGTAGATGATGGTTAAGTAATTCGTCATCCCGCTACGTGTTAGCGGGATCTAGAGATACCGTGACGGTATGACGGTTCGCGCGGTGGCATGACCTCGTCATCCCGCTACGTGTTAGCGGGATCTAGAGATACCGCGA

>NZ_CP041215|3|1|401848-402106|CRT
CGCTACTTGTTAGCGGCTAAGAGATACCGCGG	CGGTATGACGGTTTGCGGCGGCATGACCTCGTCATTCCC
CTACGTGTTAGCGGGATCTAGAGATACCGCGA	ATGAATCGCGGTATGACGGTGTAGATGATGGTTAAGTAATTCGTCATCCCG
CTACGTGTTAGCGGGATCTAGAGATACCGTGA	CGGTATGACGGTTCGCGCGGTGGCATGACCTCGTCATCCCG
CTACGTGTTAGCGGGATCTAGAGATACCGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041215.1\|WP_015588829.1\|394010_394286_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NZ_CP041215.1\|WP_015588827.1\|397044_398772_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_141456785.1\|396266_396863_-\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|236455
NZ_CP041215.1\|WP_006279515.1\|393560_393839_-\|YggT-family-protein	unknown	unknown	gnl\|CDD\|376765
NZ_CP041215.1\|WP_141456652.1\|411651_412418_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP041215.1\|WP_010082071.1\|408296_408458_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222853
NZ_CP041215.1\|WP_015588825.1\|399962_401255_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	unknown	unknown	gnl\|CDD\|184642
NZ_CP041215.1\|WP_015588818.1\|410055_411096_+\|Mrp/NBP35-family-ATP-binding-protein	unknown	unknown	gnl\|CDD\|378455
NZ_CP041215.1\|WP_015588824.1\|405403_405715_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_010082072.1\|408139_408304_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP041215.1\|WP_081600753.1\|408880_409183_-\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP041215.1\|WP_006279415.1\|394276_394498_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_141456652.1\|405742_406509_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP041215.1\|WP_141456786.1\|406959_407736_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_015588819.1\|409649_410048_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273806
NZ_CP041215.1\|WP_006279412.1\|394703_395141_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226335
NZ_CP041215.1\|WP_141456787.1\|408461_408896_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|379098
NZ_CP041215.1\|WP_015588828.1\|395618_396209_-\|CvpA-family-protein	unknown	unknown	gnl\|CDD\|367140
NZ_CP041215.1\|WP_015588826.1\|398918_399962_+\|phenylalanine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|234780
NZ_CP041215.1\|WP_141456784.1\|391445_393560_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|224588

Protein	Function_ID	Function_description	E-value
NZ_CP041215.1\|WP_015588829.1\|394010_394286_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	3.22731e-15
NZ_CP041215.1\|WP_081600753.1\|408880_409183_-\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	7.16945e-06
NZ_CP041215.1\|WP_141456785.1\|396266_396863_-\|riboflavin-synthase	gnl\|CDD\|236455	PRK09289, PRK09289, riboflavin synthase.	7.02414e-91
NZ_CP041215.1\|WP_006279515.1\|393560_393839_-\|YggT-family-protein	gnl\|CDD\|376765	pfam02325, YGGT, YGGT family. This family consists of a repeat found in conserved hypothetical integral membrane proteins. The function of this region and the proteins which possess it is unknown.	7.91468e-08
NZ_CP041215.1\|WP_141456652.1\|411651_412418_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	4.72894e-33
NZ_CP041215.1\|WP_015588825.1\|399962_401255_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	gnl\|CDD\|184642	PRK14353, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU.	2.26442e-173
NZ_CP041215.1\|WP_010082072.1\|408139_408304_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.26759e-09
NZ_CP041215.1\|WP_010082071.1\|408296_408458_-\|hypothetical-protein	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	8.08186e-07
NZ_CP041215.1\|WP_141456652.1\|405742_406509_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	4.72894e-33
NZ_CP041215.1\|WP_015588818.1\|410055_411096_+\|Mrp/NBP35-family-ATP-binding-protein	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	1.64446e-126
NZ_CP041215.1\|WP_015588819.1\|409649_410048_+\|hypothetical-protein	gnl\|CDD\|273806	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase). Several lines of evidence suggest that members of this family (loaded as a fragment mode model to find part-length matches) are associated with transposition, inversion, or recombination. Members are found in small numbers of genomes, but in large copy numbers in many of those species, including over 30 full length and fragmentary members in Treponema denticola. The strongest similarities are usually within rather than between species. PSI-BLAST shows similarity to proteins designated as possible transposases, DNA invertases (resolvases), and recombinases. In the oral pathogenic spirochete Treponema denticola, full-length members are often found near transporters or other membrane proteins. This family includes members of the putative transposase family pfam04754.	2.13299e-06
NZ_CP041215.1\|WP_006279412.1\|394703_395141_-\|hypothetical-protein	gnl\|CDD\|226335	COG3814, COG3814, Uncharacterized protein conserved in bacteria [Function unknown].	1.86948e-25
NZ_CP041215.1\|WP_141456787.1\|408461_408896_-\|IS3-family-transposase	gnl\|CDD\|379098	pfam13276, HTH_21, HTH-like domain. This domain contains a predicted helix-turn-helix suggesting a DNA-binding function.	2.94081e-14
NZ_CP041215.1\|WP_015588826.1\|398918_399962_+\|phenylalanine--tRNA-ligase-subunit-alpha	gnl\|CDD\|234780	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated.	0
NZ_CP041215.1\|WP_015588828.1\|395618_396209_-\|CvpA-family-protein	gnl\|CDD\|367140	pfam02674, Colicin_V, Colicin V production protein. Colicin V production protein is required in E. Coli for colicin V production from plasmid pColV-K30. This protein is coded for in the purF operon.	1.96511e-19
NZ_CP041215.1\|WP_141456784.1\|391445_393560_-\|DNA-translocase-FtsK	gnl\|CDD\|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	5.00904e-172

>NZ_CP041215.1|WP_015588825.1|399962_401255_+|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU
MISKTHTFVILAAGHGRRMNSDLPKVLHKIGSFSMLQHVIYNAKQLNPENIAVVVDQPLIERLKCFKDIQLITQELTLGTGDAVKTAMRNLRELPDSSIVVVQYGDTPLIKSSTITKMISYLEGKALVCLGFRTSNKEYGRLIIENGSLREIVEAKSDKNNHEEFLANAGIMVACAKNLRELVEKIECNSSTHEYYLTDIVSIAVKSNLNVGYVITGGEEATGINNRNDLIKAEFYFQENKRKVFTDSGVTLVAPETVFFSLDTQIARDSVIYPYVFFGTGVKIESGAKILPFSHLENCLIKSNAEVGPFTRIRGNTTIGNKAKIGNFVEVKTSEVGQNTRIKHLSYIGNAKVGQESNIGAGTIVCNYDGKNKHETNIGSNCFVGANSSLIAPLNIHDESVIAAGSVIVEDVPEKSLAIAREKQVTKRIK
>NZ_CP041215.1|WP_015588826.1|398918_399962_+|phenylalanine--tRNA-ligase-subunit-alpha
MNKELLDDILSLEDKAVSEIENASSLQDLEKVRLLYLGKKGVVRAYFDNLKKIENAEKKRDLGAVINALRDKIDHLIMNRENVLKTEEVNFKLQNEAVDITLPVRPEKMGKVHPLSKVINEVKLIFAHMGFKAVDGPDIEDEFHVFDALNTPSHHPAREEQDTFYLKNKIDDKRMVLRTHTSSVQIRTMEKTKKFPIKIVAAGRVYRNDFDATHTPMFHQIEGLYVDENVNMGQLKFTIHHFLNKFFGDKGLKIRFRNSFFPFTEPSAEVDISYKGSKWIEVLGCGMTHPNVFQNVGIDHTKYNGFAFGIGIERLAMLKYQISDLRSFYDNKISWLDHYGFHFSSLR
>NZ_CP041215.1|WP_015588827.1|397044_398772_-|hypothetical-protein
MHNSNTETKNKYKIEDLPKLFKEKSRNISKAFSSETIKISAIRSRSIESNIQKFSFELTATDKDTFNIRLFRINPLIDFFKICLSREKKFTANIKVPKESSELYNNYCKTNSYKTVEEFVNSAPPQILLQGTTITLQTDVENINLDNLYQIELFLNEKLQHAEKTENEDKKEQSETNQKNAQNKQIVPVTGSFGFDVTNNGKQVTRVSIVVAAMHENVFWFRSFFCLPNFFNTSQFFSQQLPKFSIQSNNIPFGVIPAFDQEKRNMDPSSQATRMTGGSIENPIPQEAEQNVGQTTSHTEYFKANRKKSKKQSQELPEEEKQSTIKQARNDARVAVIDNQIEHRGKKLDKIFIEVMSGYKNQDPETFCNIFSSVFNIVYFQDKQLHAILEPGEISEVLQILERPQPLSNSLLGKEYLQKQVYRKKEQLLKLVSGVYIQQPSPQHENTPHKSTNPLPIKDLSPATNEAKTLPPTNITLKSPLKTVFSSKKAYFCLFIIVASASTLCLWHFPLGKVSMLKGLVPPEKRESIGLALNIGLPILIALCILNLARFIYSEYSIESIKQVSENDPLSRAYS
>NZ_CP041215.1|WP_141456785.1|396266_396863_-|riboflavin-synthase
MFKGIITDIGTITDTTTHSNSDQIFHIKTQNLSYINKGDSIACSGVCLTVVDIMSDTFTVQASQETMKVANLNTWRIGKKINLEQAMRLSDKIDGHLVQGHVDGIVKFLTINQNLDSHEIKLSCPQELIKFVAKKSSVTLDGVSLTVNSVVNQEFTVNITPYTWENTTFQYNKVNDYLNLEIDMIARYLDQLMQHKYN
>NZ_CP041215.1|WP_015588828.1|395618_396209_-|CvpA-family-protein
MLFDSLIIFIVVLCVIISVTRGFIKELCALMFLFLSVFLTANHYDFFTPNYSKYFDSKVTLNILSTISVFIILNLIFMIINNWLMYILLPIRLGFIDRVTGIFLGVLKGILLSYVLFFAVHLYCYTVYDKKEGEYKIEAEDILPNWIINSHSYQALFVTAEEVIDMYVPESLILKIKEIGGEMVDQEKPKNNKKEE
>NZ_CP041215.1|WP_006279412.1|394703_395141_-|hypothetical-protein
MEQTDYKKLLNSAKFQVIKKTLDVISGNGFIPHLEILFFTYFNGVTMPDRLKKSYPTQMLIILQHQFYDLKVSEDKFSVSLSFQGKQERITIPFFAISEFRDKISGDVLIFDKISIDSDKEYKSEKCTEKLSNGSIISIDQLRDE
>NZ_CP041215.1|WP_006279415.1|394276_394498_-|hypothetical-protein
MANSGINIALSEETLKHLAELSEFTKQPVQELAGKLFREAVELEMEDFLVSKISDERDVEGAETVDFEDIKWD
>NZ_CP041215.1|WP_015588829.1|394010_394286_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MGLERYKVKSLKSVVEKDLPNLPKTIRLRVQKAIKERLTVDPINFGEPLHHNLKGCRRLRVGDYRVIYRVNQLDHIVTITEIGHRDDIYKK
>NZ_CP041215.1|WP_006279515.1|393560_393839_-|YggT-family-protein
MHPIIYLLNTLLDLYSFILICWVVLNWLVKLNMVNIYNETVSSIMHILNQLTYPPLKIIRRYIPPFNGLDLSIMILLITIHFVKYTVAYYFR
>NZ_CP041215.1|WP_141456784.1|391445_393560_-|DNA-translocase-FtsK
MLKKYLKSAIYLSLLIYIYISVFSYNYKDPSLNTATNEEVTNLGGIVSSYLADILVQFLGLTSVTIATTIVYLLIFRPSKRLLKILYLILINLGICAILPQLSLGITARYRHSGIIGNALINNCPFYIFVIVTSIGLVGSVGWKRTIYSLFFLCKKIACLFVNVPFFRSHKTTEYSIAPLVVEEKHRTKITTKQQPKERQKKATEEVLSEFKFPSIHLLSKAEESLQRKQLNEMESNKNLSLLEQVLSDFGVQGKIISVCYGPVVTLYKLEPQAGTKSARVIGLADDIARSMSALSARISIIRGQNAMGIELPNKEREIVMLRDLLESPEYQNANLNLPIALGKEISGKPVIADLTKMPHLLVAGTTGSGKSVAINTMILSLVYRLSPDECKMIMIDPKMLELSIYDAIPHLITPVVTEPKKAVVALKWIVKEMENRYRMMSYLNVRNVINYNQRITEAMNSGIELERVVQIGFNSTTGKPLFEKLPIKMETFPYIVVIVDEMADLMLVAGKEIECSIQRLAQMARAAGIHIIMATQRPSVDVITGVIKANFPTRISFAVTSKIDSRTILGEQGAEQLLGMGDMLYMASGGKIIRIHGPFVSDDEVQDIVDHLKMQGEPNYMEEITKEDENSSVESEGETEDEENDLYNQAVAIIQRDQKVSTSYIQRQLRIGYNRAANIVERMEKEGVVSAPNYSGKREILVE
>NZ_CP041215.1|WP_015588824.1|405403_405715_+|hypothetical-protein
MKTFTKNFKNNEKKLEEFNKEIEDITTIAQDKFAHELENIAYDSVQKFRSLLAKELNSTFNNIHSQNVNLLKSSLVEYAISSNFINKKGETALIRSLLNIFIR
>NZ_CP041215.1|WP_141456652.1|405742_406509_-|IS5-family-transposase
MYPSDISDKEWEILEPSVAQGAVGRPRKHNIRTIINAIRYIMKGGCQWRMLPKDFPPWKTVYDYFLRWRNSGKLEEIHNMLVKKVRKMVGKNEIPSVGIIDSQSVKTTQKGDPEDMMPGKKIKGRKRHIIVDTIGLIITADVHSAGIQDRDGALNLFTQAKRKAPTLQRFLADQGYIGKLQNYCLLKTGCLLTITKKAADAVGFQVIPKRWIVERTFAWLSNFRRMSKDYEHSPLTSKTNISFNMITIMLAKLAA
>NZ_CP041215.1|WP_141456786.1|406959_407736_+|hypothetical-protein
MNDKDLFEEDGDNIEENNDDKRERSLENENQQNQEEQHKEEDKQYIIQYIQDYLKVFEDILNQIDEGIDNLDSYERTMQIKRSIDRLIETLYSQAASEDIDAEFETTKHTRDKSESMKRVREKRRKQAIEEVLSSMFAQQQKELMNAKHLSHGHETAHDDEAKKRVKSSIRGVLFSVIAHRMDPRRRAGETADDNEKQAHIHGREAVGGALGALLKTFLTAVAAIVHEIAKPLQKQETSFAKQVEESRNADSQKGRSV
>NZ_CP041215.1|WP_010082072.1|408139_408304_-|IS3-family-transposase
MSNKGCCYDNSVAESFFSSLKREILIDTSQHSAQQTRTAIFEYIEIFYNKQRHY
>NZ_CP041215.1|WP_010082071.1|408296_408458_-|hypothetical-protein
MSSAINKQLVMNSLLMAINRRKPVKNLLLHSDQGSQYTAQGYQYLLAVKNIDE
>NZ_CP041215.1|WP_141456787.1|408461_408896_-|IS3-family-transposase
MFFYIVTAIKYRNYVGFSASGYYKWTTRKISSRESANKELLEAIQKIYQVSKCRYGAPKIYAELKALGKSCNLKTVQSIMQKNDIRAILRRKFKIKKQQTDNRAVAPNILDQNFIVDQPNKVWDYLHQNQGGMAIFGSNNSHVW
>NZ_CP041215.1|WP_081600753.1|408880_409183_-|transposase
MVREYTAEFKLEAVKLANEQRKAGQTITKIARDLGIKGGLLGKWIKKHNEKKSAADAFPGRGNMAPYDKERFDLQSKSNKGKRHLKKSPGQSKRVKYFFI
>NZ_CP041215.1|WP_015588819.1|409649_410048_+|hypothetical-protein
MKSTKLERSRMRLKVSRTVLKSSEEGRPSSLRQQYADETTEEDLRKIAEKAPIIKLAYDELDRFSWNEKDLVAYEERIMDLLKEEGILAKKLDEGKIEVAKNLLKADISIDIISQTTGLPQAEIKRLQEEIT
>NZ_CP041215.1|WP_015588818.1|410055_411096_+|Mrp/NBP35-family-ATP-binding-protein
MINEKIVRENLKKVIEQKSGKDVIALGIISSIIIKGQDVGFVLEVAGNTQANEELRRNCEQAVKAIPGVTKVTVVATCQKQTGQQKAKLHIEGVKNIIVVASGKGGVGKSTVALNLALSLAKLKHKVALVDADIYGPSIPKMLGAEKLKPEIQDSKAMPIEKYGLHTISIGYFIDKDRAAIWRGPMITKALYSLLMGTKWSDIEYLIIDTPPGTGDVHLSLMENFNLTGAIIVSTPQELSLIDARKIYDMFTKLSVPVIGIVENMSYFIQSGSKIYIFGKDGAKKMSEELGIKLLGRVPLDPQICHASDCGNPLMLSEDLAGIYEGIAKDVIAKVALQFEKPSFRY
>NZ_CP041215.1|WP_141456652.1|411651_412418_-|IS5-family-transposase
MYPSDISDKEWEILEPSVAQGAVGRPRKHNIRTIINAIRYIMKGGCQWRMLPKDFPPWKTVYDYFLRWRNSGKLEEIHNMLVKKVRKMVGKNEIPSVGIIDSQSVKTTQKGDPEDMMPGKKIKGRKRHIIVDTIGLIITADVHSAGIQDRDGALNLFTQAKRKAPTLQRFLADQGYIGKLQNYCLLKTGCLLTITKKAADAVGFQVIPKRWIVERTFAWLSNFRRMSKDYEHSPLTSKTNISFNMITIMLAKLAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP041215_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041215_4

467817-467921

Orphan

Consensus_repeat	Method
CCGCTAACAAGCAGCGGGATGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041215_4

>merge|NZ_CP041215|4|467817-467921|CRISPRCasFinder
CCGCTAACAAGCAGCGGGATGACGAGCTTATCGTCACGCCGCCACGAACCGTCATACCGCGATTCATTCGCGGTATCTCAGCCGCTAACAAGTAGCGGGATGACG

>NZ_CP041215|4|3|467817-467921|CRISPRCasFinder
CCGCTAACAAGCAGCGGGATGACG	AGCTTATCGTCACGCCGCCACGAACCGTCATACCGCGATTCATTCGCGGTATCTCAG
CCGCTAACAAGTAGCGGGATGACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041215.1\|WP_015588785.1\|461973_462579_-\|OmpA-like-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_010082072.1\|461290_461455_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP041215.1\|WP_015588775.1\|479463_480390_-\|ribose-phosphate-diphosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_CP041215.1\|WP_141456787.1\|460698_461133_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|379098
NZ_CP041215.1\|WP_015588776.1\|479120_479474_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NZ_CP041215.1\|WP_010082071.1\|461136_461298_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222853
NZ_CP041215.1\|WP_015588781.1\|469652_470294_-\|dioxygenase	unknown	unknown	gnl\|CDD\|239542
NZ_CP041215.1\|WP_015588779.1\|473576_474500_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_141456807.1\|477816_479079_+\|Tol-Pal-system-protein-TolB	unknown	unknown	gnl\|CDD\|235351
NZ_CP041215.1\|WP_015588782.1\|468053_469592_-\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_CP041215.1\|WP_006279881.1\|466128_466434_-\|integration-host-factor-subunit-alpha	unknown	unknown	gnl\|CDD\|259857
NZ_CP041215.1\|WP_141456806.1\|466494_467682_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP041215.1\|WP_006279879.1\|465160_465757_-\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_CP041215.1\|WP_081600753.1\|460411_460714_+\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP041215.1\|WP_141456805.1\|462697_465148_-\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_CP041215.1\|WP_015588778.1\|474726_475845_+\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|236757
NZ_CP041215.1\|WP_015588780.1\|471942_472890_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376773
NZ_CP041215.1\|WP_141456808.1\|480693_481560_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_CP041215.1\|WP_006279880.1\|465802_466129_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133393
NZ_CP041215.1\|WP_012673044.1\|476176_477811_+\|ribonuclease-J	unknown	unknown	gnl\|CDD\|223668

Protein	Function_ID	Function_description	E-value
NZ_CP041215.1\|WP_010082072.1\|461290_461455_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.26759e-09
NZ_CP041215.1\|WP_015588775.1\|479463_480390_-\|ribose-phosphate-diphosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	5.86359e-123
NZ_CP041215.1\|WP_141456787.1\|460698_461133_+\|IS3-family-transposase	gnl\|CDD\|379098	pfam13276, HTH_21, HTH-like domain. This domain contains a predicted helix-turn-helix suggesting a DNA-binding function.	2.94081e-14
NZ_CP041215.1\|WP_015588776.1\|479120_479474_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	2.19765e-16
NZ_CP041215.1\|WP_010082071.1\|461136_461298_+\|hypothetical-protein	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	8.08186e-07
NZ_CP041215.1\|WP_015588781.1\|469652_470294_-\|dioxygenase	gnl\|CDD\|239542	cd03459, 3,4-PCD, Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.	1.30741e-50
NZ_CP041215.1\|WP_141456807.1\|477816_479079_+\|Tol-Pal-system-protein-TolB	gnl\|CDD\|235351	PRK05137, tolB, Tol-Pal system protein TolB.	0
NZ_CP041215.1\|WP_015588782.1\|468053_469592_-\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_CP041215.1\|WP_006279881.1\|466128_466434_-\|integration-host-factor-subunit-alpha	gnl\|CDD\|259857	cd13835, IHF_A, Alpha subunit of integration host factor (IHFA). This subfamily consists of the alpha subunit of integration host factor (IHF) and IHF-like domains. IHF is a nucleoid-associated protein (NAP) that binds and sharply bends many DNA targets in a sequence specific manner. It is a heterodimeric protein composed of two highly homologous subunits IHFA (IHF-alpha) and IHFB (IHF-beta). It is known to act as a transcription factor at many gene regulatory regions in E. coli. IHF is an essential cofactor in phage lambda site-specific recombination, having an architectural role during assembly of specialized nucleoprotein structures (snups). IHF is also involved in formation as well as maintenance of bacterial biofilms since it is found in complex with extracellular DNA (eDNA) within the extracellular polymeric substances (EPS) matrix of many biofilms.	1.31102e-34
NZ_CP041215.1\|WP_141456806.1\|466494_467682_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	7.45752e-16
NZ_CP041215.1\|WP_006279879.1\|465160_465757_-\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	4.69003e-30
NZ_CP041215.1\|WP_081600753.1\|460411_460714_+\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	7.16945e-06
NZ_CP041215.1\|WP_141456805.1\|462697_465148_-\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_CP041215.1\|WP_015588778.1\|474726_475845_+\|molecular-chaperone-DnaJ	gnl\|CDD\|236757	PRK10767, PRK10767, chaperone protein DnaJ; Provisional.	0
NZ_CP041215.1\|WP_015588780.1\|471942_472890_+\|IS110-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	1.81482e-18
NZ_CP041215.1\|WP_141456808.1\|480693_481560_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	2.28511e-24
NZ_CP041215.1\|WP_006279880.1\|465802_466129_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133393	cd04765, HTH_MlrA-like_sg2, Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	1.51321e-35
NZ_CP041215.1\|WP_012673044.1\|476176_477811_+\|ribonuclease-J	gnl\|CDD\|223668	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair].	2.43285e-172

>NZ_CP041215.1|WP_141456806.1|466494_467682_-|MFS-transporter
MESRAKAWFIWLISNLVVIFSNMQIIYTFISVNLEKELGLTIAQVALANSAYTWTFAILQFFSGATFNVFSSKKIYFFSLSTMILGFFVLINSDNFSHLILSQVLIATGASFGFIGAAHTSSICFSAAQFGLMFSLVQTISSLSALVIQILFSNLLAEDAYWKNLIVCIILFGVLIFVLTLFCPNTLPESSSEKRTIKSSMKTVMCSILTVLKLRDIWITSVVGAITFGTFLALNTLWAPRLLGNSELNAMESGIATAILWLGLAVGAPIADRISNLFKNRKHVISAFALLQGVSIIILLYSHLTVHVVYFCMLMFGFFAGGHMLNFTVGSEIVKRKYISTSSSIINGFMFIGSGVIVSMLALFTDHKMALFAIFAILIVAGILNYATKETYSKK
>NZ_CP041215.1|WP_006279881.1|466128_466434_-|integration-host-factor-subunit-alpha
MDHVTTKDTTVTKATIAGDINQEIGLSKEDSVSIIDDILDEIKTSLVKDGIVKISSFGTFLVKKKKERPGNIPNTSEKVMIQARNSVSFRPSKIIKKSINN
>NZ_CP041215.1|WP_006279880.1|465802_466129_-|MerR-family-transcriptional-regulator
MNKEKLFYTIGEVAEELHLEQHVLRFWEGQFHQIKPTKRKGRRLYDRKCIEAIKKVKYMLYDKGYTIKGVQKEFGNDIKVTKNLLQELTDLRDYLTSKINNEESNKQA
>NZ_CP041215.1|WP_006279879.1|465160_465757_-|M23-family-metallopeptidase
MWHIASFLMLLAILIGCGLQKPAPVLLKGEEFYGKRDLEYTREYHLIREPSVQKESRKAIINRIYKDNNNTQNVGVNCKFVMPVKGSATSSDEMCKDGIKIAAQNGTNVVSSAPGKVIYVGKGLRWYGNLIIVEHKDNYMTVYSYLKNIHVEIGDKVKQGQVIGSAGKSSTQDKDPQMCFTIRHNGQAVDPLMHMNCN
>NZ_CP041215.1|WP_141456805.1|462697_465148_-|leucine--tRNA-ligase
MKYDFKSVEKFYQDKWDFSVSKSGKQEKCYVLEMFPYPSGKIHMGHLRNYAIGDVIARYKRANGFEVLHPIGWDAFGLPAENAARDNNISPETWTKENIDNMRTQLKSIGLSYNWERELSTCEPDYYKHEQKFFLDFLKHGLAYRKESWVNWDPVDQTVLANEQVVDGKGWRSGAVVEKRKLSQWFLKITDFAEDLLKCLQSLKNWPEKVKTMQERWIGKSEGVTIDFEIVGLNKKLKIFTTSPHTWFGASFFAVAAEHPIVQDLKDKEIRDFIDGMKAKEENDEKIGVYTGLNVKHPFLDKELPLYIANFVLMEYGEGAIFGCPAHDQRDFEFAQKYDLPVIPVICEKGAQAIVTLEEAYTGGEIMCNSEFLNGLTVSEAKEVIIKKLKEKGIGEKTTNYRLHDWGISRQRYWGCPIPIIYCRDCGTVPVPEKDLPVVLPTDVEFTSGGNPLDKHPTWKFVDCPKCGKQAERETDTFDTFFESSWYFAAFCSEDKSIDKDACNRFMPVDYYIGGIEHAILHLLYSRFFCRALTKCGYFDIKEPFSTLITQGMVCHATYKDENGKWLFPAEAKELIAQGAKVQVGKVEKMSKSKKNTVDPNFIIEKYGADTARLFVLSDTPPEKDMEWSDDGVEGCSRYVNKLWRMVMQLKPVNMHYDNKSVTGGLLEYRKKIHKLLHGLTDDLENCRLNCVVAKFREMTNLIAEIDVAAGKSLINEGICILIRVIEPFMPHLAESLWQEIGGQPWPKADESLLVDDTVTIAVQINGKLRATIEVAINLPQEELKKIAIDSVSSKIDQNKVRTVYAVPNKIVNIVI
>NZ_CP041215.1|WP_015588785.1|461973_462579_-|OmpA-like-protein
MKMKRLCALAVLLTSSLAGTANNSASKSEDQYYAGLNFGAGWGGGLKIKPSVVFGYHHDKNSKFELEVLTDISDMFGKEEKKMGASLLANYRYYPNLDIDPVKLYVSGGLGGYLQVIPFGFGNSGTSEPASKDIEAAGEKASVVDKILGSISYKLKVGVDYEIAPQIVGTVGITAGGQLSGFKPPVQIPDAILEVGIRYNF
>NZ_CP041215.1|WP_010082072.1|461290_461455_+|IS3-family-transposase
MSNKGCCYDNSVAESFFSSLKREILIDTSQHSAQQTRTAIFEYIEIFYNKQRHY
>NZ_CP041215.1|WP_010082071.1|461136_461298_+|hypothetical-protein
MSSAINKQLVMNSLLMAINRRKPVKNLLLHSDQGSQYTAQGYQYLLAVKNIDE
>NZ_CP041215.1|WP_141456787.1|460698_461133_+|IS3-family-transposase
MFFYIVTAIKYRNYVGFSASGYYKWTTRKISSRESANKELLEAIQKIYQVSKCRYGAPKIYAELKALGKSCNLKTVQSIMQKNDIRAILRRKFKIKKQQTDNRAVAPNILDQNFIVDQPNKVWDYLHQNQGGMAIFGSNNSHVW
>NZ_CP041215.1|WP_081600753.1|460411_460714_+|transposase
MVREYTAEFKLEAVKLANEQRKAGQTITKIARDLGIKGGLLGKWIKKHNEKKSAADAFPGRGNMAPYDKERFDLQSKSNKGKRHLKKSPGQSKRVKYFFI
>NZ_CP041215.1|WP_015588782.1|468053_469592_-|leucyl-aminopeptidase
MKNILLMFLLCFMYSLQLFATEIPAMKITISKISPDFKTIVMGLFEDNETVNDGGVLQGKQVIDNIKQFSDFNGSFGEFFSTALPEEKNVIVVGLGKKDEWNENKELNIGGKIYCELSRLKIKKAAVLIEGSAANVAYGAFLRSFKFDKYKTKKDEKITEVEEITVLVKDEQLSNAERSFEHLRQEGESIFLARSFITEPPNILYPESYADHIKKELTKLGLEIEVLDKKQMEEKKMGALLGVAQGSSKEPKLVVIKWNGASKEQKPIAFVGKGITFDTGGVSLKPSRGMESMKYDMAGSATVVGVMHALAGRKAKVNAIGVVALAENAVGGNAQRPSDVVTSMSGQTIEVLNTDAEGRLILADALWYTQDRFSPKFMIDLATLTGAIVVALGNNEYAGLFSNNDELANRLIDAGNEVNEKLWRFPMNETYDKIIDSPIADVQNIAPAGSGGDSIMAAQFLQRFVNETCWAHLDIAGTAWHEKGTDICPRGAVGFGVRLLNKLVEKYYEAND
>NZ_CP041215.1|WP_015588781.1|469652_470294_-|dioxygenase
MNVKNILLAFLVQMVFSLPLFAADPVLLNCIETPEIYDLDARPKNFNSSNNLRRKPGSPNSAIGELIHIVGRITDINCLPIQNAVVSIWHANSRGVNHYDKNIEDDLNFAGSGRFVVNNLGYYNFITIAPGKIGDRAPHINFLVQHPDFPEFTTQMFFADHNCDNCADPVLEDFVSNGLASLLITPFTYSDQVIKTYTFNITLGGYNKFSNKR
>NZ_CP041215.1|WP_015588780.1|471942_472890_+|IS110-family-transposase
MVTSYQNFIGIDIGKFKNVVAIHKQKNAVEFDNNASGWQQLFQEFSDILPNALVTLENTGKYELGLSHFLTDKNIAVHRANTRKVKSFILSHGALAKSDRSDARALAQYGFERHRTISLFVPTSTEQSTLAALCQRRDDITQMRTQEKCRLEAPENDHIKESCQKTIEFFDSQINELNDTIQKIIDESRELQQRQKILKTVPGIGKKLSQDFLCLMPELGYLNRKEVASLAGVAPHPKESGKAVGYRRITGGRSNVRSKLFTAAMAATRSKSILGAFYSKLVESGKKKMVAITALMRKIIVIANTRLKEAINLHT
>NZ_CP041215.1|WP_015588779.1|473576_474500_+|hypothetical-protein
MVASDSVLKRYALAYIKKLGNNNNIEGFLQYCNNTPNLTWSKENFKNVYEEFTHPNSSNRHDTGSRNDQYNAGNNAQPTGSQTTHIHVYNDRGLDFWDYLLLRSLFGGHTTVINNPGFSSGSHQSREDKKKDSEDNRKLLALGMVAAVVCVAFHAGMCFWYNSSRKVARKEEKIDYLDSKFKTFRNIEFAVGAVSLAALVACAVYPVLPVWGLVILGVNSLVCFTGGLAFHMKHEEESENIEKAERAVDSYLKQGHGYGDSSRYDAPPPYFSQDPNTTPTAPPQNAFDNPYLQQKFGNCKGFTRDKN
>NZ_CP041215.1|WP_015588778.1|474726_475845_+|molecular-chaperone-DnaJ
MSKKDYYDLLEVGRNANIDEIKKAYKKLALKYHPDRNPGNKEAEEKFKEVTAAYEVLSDSEKRAGYDRYGHEGASGGFQGFSSAGDFSDIFNDFFGGGFGGGASRSRAKRSTTGVSGADLRYDLEITLEDAFKGIQAPIHYVTNVKCDTCQGTGGEGAIKPVQCHTCQGSGRIRTQQGFFTIERTCTTCYGEGEIIQNKCKKCGGSGRRRDEVNISVSIPKGIEEGAKVRISGKGEAGTKGGKSGDLYVYVKIIFHKIFARNKADLHCKVPIRMTLAVLGGEIDIQSIDGAKIKVKVPEGTQTGTKLRCREKGMPYMNSHARGDLYVQVIVETLNPKNLTKKQIELLKALEEEENASVQQQSEGFFSKVKKK
>NZ_CP041215.1|WP_012673044.1|476176_477811_+|ribonuclease-J
MNINKNEFLFLPLGGVGRIGMNVSLYHYQGKWIMIDLGVGFADETMPGVELLIADIDFIAQRKKDLLGIIITHAHEDHCGAVPHLWEELQCSIYTTKFTVNFLKEKLKEFRLEGIVPVKEVDINGSINLGPFTVEFINVTHSIPEANSILISTEMGSALHTGDWKFDPKPVVGLTSNMERLKEIGDKGDLLAAICDSTNILSKHHPESEGEIYNNIYNIIKRSKKLVAVSLFASNVARIETISQAAKALNRKVVLLGRSLWRIVKVAQDSGYLTDSPQFLEAKEAVNFPREELVLLCTGCQGEPLAATARLAAKSHQAFKMQQGDTMIFSSKIIPGNETRAHNMLNAFIEMGVEVITEKTEHVHASGHPTREELKEMYSLIKPKMSIPVHGEYIHTHAHVKFAKECGVAKAIMIAPGDIVNLENGEKVDSIDVDYFGIDGMLLRHPESSVIKMRKRMRDAGVIVVTAVVNKKNKLLAKPKVFVPGVFEVLEDAATIQKIVKKVESLFSLQPTKKIKNKIESSILSILKEYLLKRPIIEVQIEQV
>NZ_CP041215.1|WP_141456807.1|477816_479079_+|Tol-Pal-system-protein-TolB
MKLFVHLVLFISLFIPYFTKAALYVDIKKSSVGNIGLVVSKCTCKTALESELSENIAKVIGTNLSNCGLFNVKRGAEAESKSWKSDTVVTVSLSEISGSALELSFRLFDTFTKRELLTQSVVFPAKDWRKIGHLVSDVIHDRLIGEKGHFNTKITYIAEEKDSNYKSVRKIAVMNQDGSNIKYLTNGNRFVSTPRFSPNGKGIVYISYANGKSYIILKNLKDNTESIISAFEGVVSAPRFSPDGKSLLISHSLGGETNILSLDLSSKRTKKITKGSAISTSPSFSPDQKYMAFSSDISGSQQLYVIDFTNKSKKPKRISFGSGRYATPVWSPKGDLIAFTKIQSGKFYIGVMKPDGKEERLLSEGHKIESPAWLPNGREIIFTRTESPSNSKLYLVDLVKKNQKMVSTPTNASLPDWSYF
>NZ_CP041215.1|WP_015588776.1|479120_479474_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MPAKSTEDVITSLIEFANKRKITITKEEMLKIAQLVRIKLSNDEIDHYSKELTMLDWIHDTLLQVNTEGVSPMRYGSIDKDIHVRDDVINSQNIKKEILSNTKPEHGYFVVPKVISD
>NZ_CP041215.1|WP_015588775.1|479463_480390_-|ribose-phosphate-diphosphokinase
MKIIIGNASKELGESVVNRLDVQPSSAWISKFTDGEVNVEVANDLYNQEVYIVQSLSPPVNDNLMELLLIIDAVNRLGAKRIVVIIPYYGYSRQDRIIKNNNMQSALSAKLVANLIQTAGASSVAVIDLHSSQIEGFFDVPVTNLNCFEAFVDSINTENLAIVAPDVGAIGRARAFARALEEKYKIGLSDKIIVVDKYREKAGTSQVMNIIGEVANKNCVIVDDIVDSGGTLCNAALALKSYGAKSVTSCITHGVLSGSAVEKISSSSLDKLVITDTILHKLEKTGKIEVVSVVNILTHFIQGGRNAS
>NZ_CP041215.1|WP_141456808.1|480693_481560_-|ankyrin-repeat-domain-containing-protein
MTEETKDGYASLYVAIQEGNIEAAELLIKCGTNVNDHYERNRTPLHIAIGRKQLEIAKLLIKNGANVNAKTQNHGKDDLTPMHFAVFANTPEFIELLASHGALINERESTEGYTPLHFAALYGNKNIIQALIDKGQDIEDVDNNGRTALFLAARQCTEAEDDSRIEIIKYLIDKLKADVTKKDNNNNAVLFPAANNCPGKVVEFIIEQYIKIFDLENFINHKNNDGMDALDIALNSGNEKAIEVLRSYGADIKNKVDGSIQKITAEKPSSTLDRAESAEVAPPIKQRV

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Crispr_ID: NZ_CP041215_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041215_5

535467-535619

Orphan

Consensus_repeat	Method
CGAACCGTCATACCGCGATTCATTCGCGGTATCTCAGCCGCTAACAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041215_5

>merge|NZ_CP041215|5|535467-535619|CRISPRCasFinder
CGAACCGTCATACCGCGATTCATTCGCGGTATCTCAGCCGCTAACAAGAGATCCCGCTAACAAGCAGCGGGATGACGAGGTATAAACTTTATCGTCATGCCACCGCGAACCGTCATACCGCGATTCATTCGCGGTATCTCGGCCGCTAACAAG

>NZ_CP041215|5|4|535467-535619|CRISPRCasFinder
CGAACCGTCATACCGCGATTCATTCGCGGTATCTCAGCCGCTAACAAG	AGATCCCGCTAACAAGCAGCGGGATGACGAGGTATAAACTTTATCGTCATGCCACCG
CGAACCGTCATACCGCGATTCATTCGCGGTATCTCGGCCGCTAACAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041215.1\|WP_038199744.1\|543407_544496_+\|phosphate-ABC-transporter-permease-subunit-PstC	unknown	unknown	gnl\|CDD\|273992
NZ_CP041215.1\|WP_010962434.1\|546769_546988_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_CP041215.1\|WP_080717647.1\|547164_547335_-\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|222853
NZ_CP041215.1\|WP_006279896.1\|542822_542960_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_007548550.1\|526972_527371_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_010082072.1\|522419_522584_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP041215.1\|WP_141456819.1\|538037_539114_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|227310
NZ_CP041215.1\|WP_141456816.1\|531349_532168_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_CP041215.1\|WP_141456818.1\|533673_535236_-\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP041215.1\|WP_141457325.1\|525660_526839_-\|ribonuclease-D	unknown	unknown	gnl\|CDD\|223426
NZ_CP041215.1\|WP_141457327.1\|528360_530871_-\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444
NZ_CP041215.1\|WP_141457329.1\|544597_546025_+\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|236447
NZ_CP041215.1\|WP_006280338.1\|524763_525351_-\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|238980
NZ_CP041215.1\|WP_015588865.1\|546037_546382_+\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|213395
NZ_CP041215.1\|WP_141456817.1\|532933_533641_+\|TerC-family-protein	unknown	unknown	gnl\|CDD\|223930
NZ_CP041215.1\|WP_006280151.1\|536194_537979_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|236378
NZ_CP041215.1\|WP_006279522.1\|532353_532536_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_006279898.1\|543165_543300_-\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|179004
NZ_CP041215.1\|WP_141456820.1\|542473_542737_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_015588855.1\|522675_524079_-\|oxidoreductase-nitronate-monooxygenase-family	unknown	unknown	gnl\|CDD\|240081

Protein	Function_ID	Function_description	E-value
NZ_CP041215.1\|WP_038199744.1\|543407_544496_+\|phosphate-ABC-transporter-permease-subunit-PstC	gnl\|CDD\|273992	TIGR02138, phosphate_transport_system_permease_protein_PstC, phosphate ABC transporter, permease protein PstC. The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions].	2.7891e-65
NZ_CP041215.1\|WP_010962434.1\|546769_546988_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	0.000245414
NZ_CP041215.1\|WP_010082072.1\|522419_522584_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.26759e-09
NZ_CP041215.1\|WP_141456819.1\|538037_539114_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|227310	COG4976, COG4976, Predicted methyltransferase (contains TPR repeat) [General function prediction only].	3.57857e-22
NZ_CP041215.1\|WP_141456816.1\|531349_532168_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	7.49665e-05
NZ_CP041215.1\|WP_006279898.1\|543165_543300_-\|50S-ribosomal-protein-L34	gnl\|CDD\|179004	PRK00399, rpmH, 50S ribosomal protein L34; Reviewed.	2.14938e-10
NZ_CP041215.1\|WP_141457325.1\|525660_526839_-\|ribonuclease-D	gnl\|CDD\|223426	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis].	1.52095e-82
NZ_CP041215.1\|WP_141457327.1\|528360_530871_-\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
NZ_CP041215.1\|WP_141457329.1\|544597_546025_+\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|236447	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.	0
NZ_CP041215.1\|WP_006280338.1\|524763_525351_-\|dephospho-CoA-kinase	gnl\|CDD\|238980	cd02022, DPCK, Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.	1.23418e-53
NZ_CP041215.1\|WP_015588865.1\|546037_546382_+\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|213395	cd12152, F1-ATPase_delta, mitochondrial ATP synthase delta subunit. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.	9.16677e-19
NZ_CP041215.1\|WP_141456817.1\|532933_533641_+\|TerC-family-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	1.11714e-41
NZ_CP041215.1\|WP_006280151.1\|536194_537979_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|236378	PRK09102, PRK09102, ribonucleoside-diphosphate reductase subunit alpha.	0
NZ_CP041215.1\|WP_141456818.1\|533673_535236_-\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP041215.1\|WP_080717647.1\|547164_547335_-\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	6.45933e-15
NZ_CP041215.1\|WP_015588855.1\|522675_524079_-\|oxidoreductase-nitronate-monooxygenase-family	gnl\|CDD\|240081	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.	1.97691e-18

>NZ_CP041215.1|WP_141456818.1|533673_535236_-|glutamine-hydrolyzing-GMP-synthase
MSAIAIIDFGSQFTQLIARQVRGMGVYCEIFPSNISFETISKFNGFILSGGPQSVNDDCSETSRVVHEIIKLNEATSVPILGICYGQQLICHYFGAKVKESFKQEFGRTKIKILKESPIVKDTWDVNSEVDVLMNHADSVDTIPQGFTVIASGVINQTIAMIVNEQRKIYCTQFHPEVRPTTNGSKLLSNFLDIANCERDWTMKSFIEEQKEKIKNVVGEKKVIAAVSGGVDSSVAAALTYKAIGKQLNCIFIDTGLLRKNQTIAMLKEIPINYVDKSNLFLSRLKGITDPEEKRKIIGNTFIEVFEEEAKKIGDVDFLMQGTIYSDVVESGHASDNTSTIKSHHNVGGLPEKMNLKLVEPLRYLFKDEVRLLGKEIGLSDEIIFQHPFPGPGLAVRIISEVDKEKVQILQEVDEIYINTMKNYDLYDKIWQAFAVLLPIKTVGVMGDGRTYGYVCALRAVTSSDGMTADAFPFENKDQHLLVFWDFLQNVGSIIVNNVPGVNRVVYDITSKPPATIEWE
>NZ_CP041215.1|WP_141456817.1|532933_533641_+|TerC-family-protein
MLTDAWTLLTLTLLETILSVDNLIFISLAIDKVPNALRERVRLMGLGLALLMRFVILFFTSSILSMQKPIFHTASARDLLMIAGGLFLIVKSSMELRDDIFVCKKNKKKANVKSKFFLVVLQIILIDLVFSVDSILTAIALTYNMVIIATAFTFSMLAMLFLSSYTAQLIKSNPGLKIIAILFILLVGVYLILHGFHIELPKGYLYSSFMFALLVEIISKIKKINRHTGIHSRYL
>NZ_CP041215.1|WP_006279522.1|532353_532536_-|hypothetical-protein
MVENLGVVFTTAQRAIVKLEDLGIVSQTSQGKRDRVYCATDILNILEEPTKITENFDSTL
>NZ_CP041215.1|WP_141456816.1|531349_532168_-|ankyrin-repeat-domain-containing-protein
MINNLDSIILGIKDGEKAIEDLRVVLKKRKEEVITTQTFNYALRCPKTTKEAIVHEILLHFIQNPGEQSLEQVIQCLDRAIQSGIYAKNNPIRNLDEEFRTHINFKDEEGNTLLHHAVIGNKTEEIITLLVTYSANPLIQNADNKIPLDLAQGETKEVLIKSMKKQANTKKESAMVGSLVPGVIIGGFLGVVLGAGVCVAVSLSGGMILGVMIASSLVASIAIGLAMYFLSQDYEQAKAIEKTISTVSSEISVDDTTAANKNNKEGPQLTYS
>NZ_CP041215.1|WP_141457327.1|528360_530871_-|DNA-mismatch-repair-protein-MutS
MSFVKEKNTPVMEQYLNLKAQYKDHLLFYRLGDFYELFFDDAIKAAKLLNIVLTKRGNSCGQEIPMCGVPAHSSESYLHKLIDLGFKVAICDQLETADEAKKRGYKSIVKRDVVRVVTPGTIIEDSLLEDKSNNYLASIVEQNDEYAISWLELSTGKFFHTLTSLKALDSDLLRISPRELLISEKFTEDEKIRSILKNYKISITQHAQSFFEYSKSHRTLCEFYKIRELGSIGNFSKVEIMACGALLEYVRVTQRGSIPRLEFPKTYKQQNFMLIDASARRNLELFSTQFGEKKGSLISVIDHTVTASGGRLLKQMLASPLACSKAINLRLSTAQFFVNNHEPRRKIREILSNIPDIERSLSRLILGRGSPKDMNLLKIGLGKTLELSEFLSTLHNYCLSEKSEINSQMSFQCLTGEKEPVSTTQVISSDESELSTIHKSLGNHKDLFELLNSAILDNNLSSVKEGGFIYPKYNSELSELSYILNNSNKLVTKLRESYRDLTGIAALKILHNNILGYYVEVSANHKITSDIFIHRQSLANSMRYTTNELKELENKILTARDAAIGLEMKIFSELCSEVAKESEKIALAANALAKLDIRTAFAELAVQNNYVKPIIDDSKEFNICSGRHPVVEVNDKFIANSINLAGIHLITGPNMAGKSTFLRQNALIAILAHMGSFVPAESVHIGVIDKIFSRVGATDNITAGYSTFMVEMIETATIVNQATDRSLVILDEIGRGTGVYDGLSIAQAVIEHIHNVNKCRAIFATHYHELTKVSKYLKNVKCFCVKIREWNGEVIFLHEVIEGIADESYGIHVAKLAGFPDSVLNRASEVFEELKA
>NZ_CP041215.1|WP_007548550.1|526972_527371_+|hypothetical-protein
MVDFIDLFQGSKDFTMCMHNGSGDAIYNRCISAVRMDPPCMHGESIQGLFESSFEQGVVTVRVNLDLETLNVVVYKSPPTSDKLDAFSLAYQIDRYHIDENTIVFDEKVNTIKFDISNPLKHKFITFEIFKR
>NZ_CP041215.1|WP_141457325.1|525660_526839_-|ribonuclease-D
MLINTTSELEDICEGLIAKKPKFIAVDTEFIRNNLIYYPKLSLIQISYGEKSFIVDALVPEIDLSFIKKIMLNQGITKVFHSCRQDIESLLTVFKCIPTPIFDTQVAAMFCHYYHDFIGYSKVVEQYQGIALDKIKAKNSDWLRRPLSEDQLDYAVNDVVHLYDLYQILCNKLEENNRMGWFQEEMESIVDINKYLHSPKDAWKRIKFNYEVNPRLILTVKAVSEWQETLAQRYNMNRNKIINNAVIADFIEKNVEHVDEILDDLKRNTKNIKDADLLEFVNIFNENERNWMQQNNTLSSNYDKSVLDILSIILDSKCKESNISRKLVSSKDELTGSISRQTDKLFKGWRYDFFGRSVESFLNTSSKFEISAVKSANNITKIQSNLVENNCC
>NZ_CP041215.1|WP_006280338.1|524763_525351_-|dephospho-CoA-kinase
MIISLTGGIGVGKSFVANCFQEFGAVVFDADSVVHQLYKVDKSIISYAEKNFPGVVVNGEIDRTVLSKYFLAYDENWKQFQSLVHSAVLRELEFFIAKEKKIDRKLLVLDVPLLLETKFYLYCDLIVFVHADSVVQAQRLNERNIDKEKLNLISDVQLSIEEKRKMSDFIIDTSVSKEYVFSQVKDIVDSLNLNT
>NZ_CP041215.1|WP_015588855.1|522675_524079_-|oxidoreductase-nitronate-monooxygenase-family
MKNKIKKIVISGKEVWPIIEGGKGIAVSDGRSSGAFAAADAVGTFSGANAKLIDDNGKLVPLIYKGKTRNEKHSELIEYSIEAGISQARIANEISKGHGRIHMNVLWEMGAAERVLHGILEGAKGLIHGITCGAGMPYRLGEIAAKYQVYYYPIISSVRAFKALWKRAYQRISSYLLGGVVYEDPWLAGGHNGLSNSEDPELPQAPFERVAELRSFMNEIGLSETPIVMAGGVWHLKDWEHWFNNLQIGPIAFQFGTRPLLTKESPISAEWKKKLLTLEEGDVFLNKFSPTGFYSSAVKNNFIRELQERNSRQIKFSENASEEFNNEFAMGSRGRKIYLTAKDKELANTWTKAGYTEAMKTPDSTVIFVTPDKFKQIREDQINCMGCLSHCLFSNWKDHGDHSTGRKPDPRSFCIQKTLQNVIHDGDIENELMFSGHNVYKFKQDPFYENGYVPAVKELVERILTGY
>NZ_CP041215.1|WP_010082072.1|522419_522584_+|IS3-family-transposase
MSNKGCCYDNSVAESFFSSLKREILIDTSQHSAQQTRTAIFEYIEIFYNKQRHY
>NZ_CP041215.1|WP_006280151.1|536194_537979_-|ribonucleoside-diphosphate-reductase-subunit-alpha
MNNITINYAKDSKLTDFGKAVLSDRYLIENESYQDLFARIANYYSDNKEHAQRLYDYMSNLWFMPSTPILSNGGTKRGLPISCFLNETEDSLQGIVDLWNENVWLAARGGGIGSYWGNLRSIGESVKGSGKTSGIVPFIVVQNALTLAISQGSLRRGSSAVYLPVSHPEIEEFLDLRKPTGGDPNRKALNIHHAVIVTDKFMQAVENDQEWNLISPHNNKVISTVKARDIWIKILTARVETGEPYIIFLDATNNNKPESYKKLNLDIKMSNLCSEITLTTGYDHLNKSRTAVCCLSSVNLEYYEEWKDNKLFIEDIMRFLDNVLEDFINKAPNEMQRAKYSAARERSIGLGVMGFHSFLQSKMVPFESVTAQQWNKKIFKYLREQADIVSKKLAEEKGACSDAKEVDLMERFTHKLAIAPTASISIIAGNTSPGIEPYAANVFIQKTLTGSFVVRNKFLQKLLAEKNQDNDKIWSSISTNEGSVQHLDFLSEHEKLTFKTAYELDQRWIIEHASDRTSYICQSQSVNLFLPANVHKRYLHKIHMLAWKKGLKSLYYCRSQSMQRADKVSHDIFKKSEILQQKTDIDYDECLSCQ
>NZ_CP041215.1|WP_141456819.1|538037_539114_-|methyltransferase-domain-containing-protein
MKSNLSFIKNVALNCMSKLIGVLNIKKVKHFIVNKYNTLHKEMTVLLKKSKNLLNTNIEIGLYHFYKGSISDAKLRFWLISIFYPHLPIVWYNIGRCHFAVGNTNKAYNYLTRALKLDNDHEEASYYIKKMTNSAPITELPKNLIRQYFDYTGEYFVEHWLIAKQYRGHELVHMIITKIFNNSTSELNILDLGCGTGICGHFLKINSIGNHIIGIDISSRMLNIARGCFIKGKPVYNELIHMEMKEFLKQEKNQQYDVIIFAEVLHYLHDFQEELELAKRSTSKKGVIVCLIRRKEGEGIDFVNKGDYFRHSESYVQHVAKEINMQISYMSYCKIYGSQVNGILFALQHQQENPKNLT
>NZ_CP041215.1|WP_141456820.1|542473_542737_-|hypothetical-protein
MVEHIKEVNNTGFGQMYQFLFLPKGTGTDWRSAFRQQEELFKKVGGNVILPEISNSPSKGNQLGEVGTMLNNVENDQEHIRKKRYHS
>NZ_CP041215.1|WP_006279896.1|542822_542960_-|hypothetical-protein
MLAKISILNISNIGHYYIILTHRNIMQASYKNLQKDLTICLKKIK
>NZ_CP041215.1|WP_006279898.1|543165_543300_-|50S-ribosomal-protein-L34
MKRTFQPKNLIRKRRHGFRSRMATRAGRKILNRRRSLGCNKLCA
>NZ_CP041215.1|WP_038199744.1|543407_544496_+|phosphate-ABC-transporter-permease-subunit-PstC
MNSVIVIPVLLILLFCFSRFQEVNKVKSYLYLSCVWMLTWLLVFYNNCFVTFISIALLFFMLAFIFKNKRNKIIKLSLFVALAISFFITLFIMLSIFIQSISFFNKVAISEFLFCLKWGHNVVTINEEKIGCFGIAPLLVGTLLITIIAMLVVVPLGLFSAIYISEYASEKVRYIVNTTLQVLSAIPTVVYGYFAVVFLSFFIKQVANFFGLSIHSESALVAGLSIGIMILPFIISLLEDAIRSVPKSLRYGFMALGATPAETIWHITIPYAMPTILSAILLSISRVIGETMIVLMAVGINANLTFNPLNSVTTITVQIATLLTGDQDFNSVQTLAAYALSLVLFIITWLLNAFALFVMKRN
>NZ_CP041215.1|WP_141457329.1|544597_546025_+|F0F1-ATP-synthase-subunit-beta
MNIGRAIKVTQAVVDIKFEGELPKIFNALKSKLKYKDKELVLEVSQHIGDNIVRCIAMDSTDGMSRGDEFVDTGAPISVPIGRSTLGRIFNVVGELIDECGPLKGKYNLEPIHRAPPSFTEQRIQEEVLVTGIKVIDLLAPYLKGGKIGLFGGAGVGKTVLIMELINNIAKAHKGFSVFAGVGERTREGNDLYHEMITSNVININEHEKSQAVLVYGQMNEPPGARARIALTALTMAEYFRDRENQDVLFFVDNIFRFTQAGSEISALLGRIPSAVGYQPTLATDMGAMQERIASTTSGSITSVQAIYVPADDLTDPAPATTFSHLDATTVLSRQIAEMGIYPAVDSLDSTSQSLSAEIIGEEHYNVASEVKRILQTYKSLQDIIAILGMDELSDEDKIIVDRARKIQKFLSQPFHVAEIFTGMPGKFVSLSDTVSSFKGIVEGKYDHLPEAAFYMVGNIDEAIKKAELIQAEAK
>NZ_CP041215.1|WP_015588865.1|546037_546382_+|F0F1-ATP-synthase-subunit-epsilon
MNTFKVQFFSPDDQISFSGVVSLSVTGLEGELMILAHHAPYLIYLLPGMITVKMSNQIEKKVVIDSGVLEVANNNCSIITSQIQVFDRAIHDEKSFKNKRISIYLSYLDEKFLS
>NZ_CP041215.1|WP_010962434.1|546769_546988_+|ankyrin-repeat-domain-containing-protein
MISNIIRSIVKYLMRKVIKYISIIGIACLVLLFFISNVETRVKTQEEQLFLAVEDGNAQEVKLLLKNGADPN
>NZ_CP041215.1|WP_080717647.1|547164_547335_-|DDE-type-integrase/transposase/recombinase
MAVDKRKPDKNLLLHSDQGSQYTSQNYQFLLNTKNIISSMSHKGCCYDNSVAEKFT

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Crispr_ID: NZ_CP041215_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041215_6

828226-828296

Orphan

Consensus_repeat	Method
GCTTGACACTGGAATCTGCGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041215_6

>merge|NZ_CP041215|6|828226-828296|CRISPRCasFinder
GCTTGACACTGGAATCTGCGTTTTCCCTTGGTTTGGTGTCATTCCAGTGCTTGACACTGGAATCTGTGTTT

>NZ_CP041215|6|5|828226-828296|CRISPRCasFinder
GCTTGACACTGGAATCTGCGTTT	TCCCTTGGTTTGGTGTCATTCCAGT
GCTTGACACTGGAATCTGTGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041215.1\|WP_015589099.1\|831726_833475_+\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NZ_CP041215.1\|WP_015589098.1\|829650_830826_-\|multifunctional-ribose-5-phosphate-isomerase-B/3-demethylubiquinone-9-3-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	unknown	unknown	gnl\|CDD\|235350
NZ_CP041215.1\|WP_015589090.1\|817017_817884_-\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	unknown	unknown	gnl\|CDD\|184766
NZ_CP041215.1\|WP_141456963.1\|836951_837236_-\|transposase	unknown	unknown	gnl\|CDD\|225511
NZ_CP041215.1\|WP_167482801.1\|836347_836512_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222853
NZ_CP041215.1\|WP_095866555.1\|836596_836950_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|379098
NZ_CP041215.1\|WP_141456957.1\|823508_824105_-\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NZ_CP041215.1\|WP_141456961.1\|835004_836093_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP041215.1\|WP_141456652.1\|822239_823006_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP041215.1\|WP_041573589.1\|826475_827348_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_081600772.1\|836193_836358_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP041215.1\|WP_141456955.1\|817965_821226_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|274298
NZ_CP041215.1\|WP_015589089.1\|816657_817014_-\|membrane-protein	unknown	unknown	gnl\|CDD\|238152
NZ_CP041215.1\|WP_080717604.1\|831060_831117_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131744
NZ_CP041215.1\|WP_010962536.1\|815855_816656_-\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|181938
NZ_CP041215.1\|WP_141456959.1\|824326_825778_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|181676
NZ_CP041215.1\|WP_141457347.1\|821480_821576_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131744
NZ_CP041215.1\|WP_010082521.1\|829198_829639_+\|TrbC/VirB2-family-protein	unknown	unknown	gnl\|CDD\|368210
NZ_CP041215.1\|WP_167482791.1\|823026_823164_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_006280480.1\|833712_834795_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718

Protein	Function_ID	Function_description	E-value
NZ_CP041215.1\|WP_015589099.1\|831726_833475_+\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	1.2015e-163
NZ_CP041215.1\|WP_015589098.1\|829650_830826_-\|multifunctional-ribose-5-phosphate-isomerase-B/3-demethylubiquinone-9-3-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	6.90629e-135
NZ_CP041215.1\|WP_015589090.1\|817017_817884_-\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	gnl\|CDD\|184766	PRK14610, PRK14610, 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase.	1.97396e-177
NZ_CP041215.1\|WP_141456963.1\|836951_837236_-\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.57201e-07
NZ_CP041215.1\|WP_167482801.1\|836347_836512_-\|hypothetical-protein	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.47907e-07
NZ_CP041215.1\|WP_095866555.1\|836596_836950_-\|IS3-family-transposase	gnl\|CDD\|379098	pfam13276, HTH_21, HTH-like domain. This domain contains a predicted helix-turn-helix suggesting a DNA-binding function.	1.31521e-13
NZ_CP041215.1\|WP_141456957.1\|823508_824105_-\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	2.52328e-15
NZ_CP041215.1\|WP_141456961.1\|835004_836093_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	9.30992e-42
NZ_CP041215.1\|WP_141456652.1\|822239_823006_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	4.72894e-33
NZ_CP041215.1\|WP_081600772.1\|836193_836358_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.44228e-08
NZ_CP041215.1\|WP_141456955.1\|817965_821226_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|274298	TIGR02784, ATP-dependent_nuclease_subunit_A, double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP041215.1\|WP_015589089.1\|816657_817014_-\|membrane-protein	gnl\|CDD\|238152	cd00248, Mth938-like, Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.	5.56194e-37
NZ_CP041215.1\|WP_080717604.1\|831060_831117_+\|hypothetical-protein	gnl\|CDD\|131744	TIGR02697, hypothetical_protein_WD_0725, Wolbachia palindromic element (WPE) domain. This domain conceptually resembles TIGR01045, the Rickettsial palindromic element (RPE) domain. In both cases, a protein-coding palindromic element spreads through a genome, inserting usually in protein-coding regions. The additional protein coding sequence is thought to allow function of the host protein because of location in surface-exposed regions of the protein structure. Note that this model appears to work better in fragment mode. [Mobile and extrachromosomal element functions, Other].	0.0020206
NZ_CP041215.1\|WP_010962536.1\|815855_816656_-\|metal-ABC-transporter-permease	gnl\|CDD\|181938	PRK09543, znuB, zinc ABC transporter permease subunit ZnuB.	3.1773e-41
NZ_CP041215.1\|WP_141457347.1\|821480_821576_+\|hypothetical-protein	gnl\|CDD\|131744	TIGR02697, hypothetical_protein_WD_0725, Wolbachia palindromic element (WPE) domain. This domain conceptually resembles TIGR01045, the Rickettsial palindromic element (RPE) domain. In both cases, a protein-coding palindromic element spreads through a genome, inserting usually in protein-coding regions. The additional protein coding sequence is thought to allow function of the host protein because of location in surface-exposed regions of the protein structure. Note that this model appears to work better in fragment mode. [Mobile and extrachromosomal element functions, Other].	0.000696439
NZ_CP041215.1\|WP_010082521.1\|829198_829639_+\|TrbC/VirB2-family-protein	gnl\|CDD\|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	8.24181e-14
NZ_CP041215.1\|WP_141456959.1\|824326_825778_+\|replicative-DNA-helicase	gnl\|CDD\|181676	PRK09165, PRK09165, replicative DNA helicase; Provisional.	0
NZ_CP041215.1\|WP_006280480.1\|833712_834795_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	1.01971e-30

>NZ_CP041215.1|WP_041573589.1|826475_827348_+|hypothetical-protein
MPSAEFAKDIKTASEKAFTSTKEAFISGRVTRIVKDGLKDVYGTSFEPVKSALNSFGSSLKNTCDTSIESAKGTISSVGNKLKNVYDTMPSTKIEFSWVSEKFSPYWNSVKNLMFGNKADQASGASQLSSESQGNGIVIPEGAKLELSPILFDFLFREKQKMVRQFLREQTDEKKNVATQENLKTETPSQENQMNIDNVPKQPDHLNVDAAKSYLMSLSEDQDVFYDAESGDEKGTEISSPESQPTKEENGQGWFAWSLGKVKSAMTEVVVIGADVTKPYCAKVTKALAT
>NZ_CP041215.1|WP_141456959.1|824326_825778_+|replicative-DNA-helicase
MNELANLLSSRSVDKEICKLPHNLEAEQMLIGAMIRDNRICDAVEDTITAENFYDPLHQSIFTQISKTRKHGIVANELSLKMFFENDQAFTECGGVEYLAKLAAKASIALDIYSLTRIIRDTYLRRCLIKLGQEIVGDSYNYDIENPAQAQIEQAMTKLFNLAVKKQGEKTYIKLASSIKDVVEKISTLKNNPEALGVTTGLQDLNQLLGGLQKSDLLILAARPSMGKTALALNIALNACKMLQKRADKQHHVAFFSLEMSAEQLTARLITIDSGISYYKALTGRISDFELHEFINTSTELSELPFIIDDTPALSISALRTRIRLLYQLYNVEVVFIDYLQLIRGTTKRSNENRVQEISEVTQGLKAIAKELNIPIVALSQLSRSVEQRDDKKPQLSDLRDSGSIEQDADIVMFLYREEYYELRKQPNEGNNKHREWQEKMEKIRNIAELIIAKQRNGPIGSVKLYFDSNRGAFKDYTERHSS
>NZ_CP041215.1|WP_141456957.1|823508_824105_-|RDD-family-protein
MLHKFFNRLFSIFSSINVIQKVKKDENGICYVTGLRRYISVLLDLIIIVLFLQFCSQALNQLFMNSEDSKILSQIAAKSPMQAPLSAEEKTTQSRLIKLLILNQIVQFIMLFCYVIYMWAKFATTPGKLLFGLRVVDAQTFEKMTLKQATKRFFSFILSVAPLFLGFLWSNFNKRCQTWHDKIAGTVVVTSKSLRRQS
>NZ_CP041215.1|WP_167482791.1|823026_823164_-|hypothetical-protein
MMKNYKKGHRKRLREKIILDNGQSLLDYEVLEPVLKRNEKENMMR
>NZ_CP041215.1|WP_141456652.1|822239_823006_-|IS5-family-transposase
MYPSDISDKEWEILEPSVAQGAVGRPRKHNIRTIINAIRYIMKGGCQWRMLPKDFPPWKTVYDYFLRWRNSGKLEEIHNMLVKKVRKMVGKNEIPSVGIIDSQSVKTTQKGDPEDMMPGKKIKGRKRHIIVDTIGLIITADVHSAGIQDRDGALNLFTQAKRKAPTLQRFLADQGYIGKLQNYCLLKTGCLLTITKKAADAVGFQVIPKRWIVERTFAWLSNFRRMSKDYEHSPLTSKTNISFNMITIMLAKLAA
>NZ_CP041215.1|WP_141457347.1|821480_821576_+|hypothetical-protein
MCKENWIPVSSTGMTSSRQPLRHPVTVSLSR
>NZ_CP041215.1|WP_141456955.1|817965_821226_+|UvrD-helicase-domain-containing-protein
MRSNAINPNFSVWVNASAGTGKTKILIDRVLRLLLENKRNILCLTFTNAAANEMENRIHSILSKWAICSDSELIMDLEQLDFFPMYPYLSSQCVTLGSRKNKDYLTRARRLFSELENLGLTIQTIHAFCYKLISSFPIEAGIAPNCTLSECKELHSIIFNKVLHNETVQDDINLIATEIDENKLRDLLYTLCVKRSMSANDSKYIKDKLSAPDGIHDLQSETIEHVGRLAEILSEGSKRDQSYSEILYSTVIPAGIQKKRTSVSYSDDTGIKWNDTKIENLAKVFLKSESHEKKSISSIATKSILEKFKDAEQIIESVQNVVFTHIRDMNSYQIFKRTSSLLGIFKVYVDLYSSEKSKNALLDYNDIIGLATNLLSNPNYKDWILFNLDQKIDHILVDEAQDNSISQWKIITNLCDEFFAGNDEKRTLFVVGDVKQSIYRFQGANPHLFNYMQQYFHTKTGGRDWISCQLEKSFRSTPEVLMLVDRIFNNFRAEISFNDNEIKHVPHRENDQGYIEIWPALPRRKEKEQRALQIPLTCKEGYTIADRLLAQTIANRIHNWLNEGRILVAKDRHIEPRDIMILVRQRNVLVDYIISELKKANVPVVGRDYFRIMDYIAVQDLIALAEFLLLQANDLALANALKSPLFNFTEDDLFNIAYDRKEHSLWERIQDYSVVIYSELNYLINLSRIESPLALFTHILRTGKKKFAARLGLECFEVLDEFMNLVLQFENPSLQAFVQWIKENNPEIKNDMQSERNAVRIMTIHKSKGLQAPIVFLVDTNTVPRSNESIIFDGMEVPFWCGKNNNAYCDQVKREKKLEDYNEYLRLLYVALTRAEDELYILSKEPVQKGSWYDLITQYGTSYEKKQACLQPIFKEKVEVLCVNANYPYIYKKRDYFDVPVISLPPNLSMSFQHVTLEPREKKPVSSYLNDKKKSTGMTDGYARGLIIHSILQYMPKIEKERRKNWVRKYLDNINTSEDKDEIYSKILAFNEKYGYLFDLGGKSEITLSGIIDGEPVLVRLDRLCITQDKAIIIDYKSHRNVSVSLLNEIKKQMLIYKTLVQEIYPNKQVECVVIWVEDLTIQSDF
>NZ_CP041215.1|WP_015589090.1|817017_817884_-|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase
MKSFCVKAPAKINLFLHVVDKKETGYHLIEGLFVFANLSNFLEIKVGEKDSRYDNSTVEFINSESRINNQYNTVMKAVNLLLRHAPVRTKVTVKVVKNIPIAAGLGSGSSDAGAVVRTLGKLWEIDRTILNEIALNVGADVPASVDSKPVFVRGIGEELCHIKKFSLPTNVVLVKPKKRFLSTPEVFSKHEGKFSEPIKWSDDAEKDLLKLLKETRNDLQEIAISFVPEIKDVISTLESQEGSILSRMSGSGVSCFGIFDSEENAKAAAVNIGKKQPEWWVCDTQLIV
>NZ_CP041215.1|WP_015589089.1|816657_817014_-|membrane-protein
MPLISENKNLINGYREGKFLVNNREYCGSIIIFPEKVIKLKESDINSKEHFKSFLTEEIEILIIGTGKTRNILSSSVKSYLMEQKGLNFEFMTTGSACRTHNVLISEDRFVVSYLIAI
>NZ_CP041215.1|WP_010962536.1|815855_816656_-|metal-ABC-transporter-permease
MLTQDFFINSLVAVVVISLVTGALGSFMIWQRLSYLGDSLSHSSLLGVALALIFKISPSLSIMLIAITFAILLSLNFNRLYSADTILNIVTNVVLSSSLILMSFLPSGNNSIISSLFGDILTLDQSDIVLIFLTSAVVTLILIFRWRYWLMISINQDLAVVEKINVTFVRLEFLITLAIFIAIAAQLIGILLIAAFLLIPAASARLISKTPMQMIIVATVFSVISGISGLMLSASFDLLTGPAIILVAAVYLIIAYFIRLVLSRLA
>NZ_CP041215.1|WP_010082521.1|829198_829639_+|TrbC/VirB2-family-protein
MIIERTMRNFLVILFIVFYAFDAHADGATDVMCNVIGYVHGIGGPMITVVIIGSSLLAIFGRMPWPALFALGMFVAVFFGAPQIVTKVTEKEVCCLFKGQTLENGKCVAAPGYERVGTGYACRSGWALTNKGYCIKAGQDPSKYWK
>NZ_CP041215.1|WP_015589098.1|829650_830826_-|multifunctional-ribose-5-phosphate-isomerase-B/3-demethylubiquinone-9-3-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase
MLGIVSIASDHAGYELKSEIKPYLEALGYRVVDQGCTAKQKCVDYPNYAVKVVEDITSKKANYGILICGTGLGMSTVANRFEGIYAALCNSVEIAKLAREHGNANVLCLGAGFTASGLAKDIVKQFLETEFSKESRHKKRLDKLSNITSKKKKTKTYNEDEISKFAKMAGQWWDENGKFKPLHMMNPVRVSYIIEKIKELKKCNLKELSLLDVGCGGGILSESMARVGINVVGIDVCEENIKVAHSHAKKVGLNIEYIHTSIEELSNDKKYDVVLLMEVVEHVDNLELFMKKAIELLKPEGLIFISTINRTIKSFCLAIIGAEYILNWLPKGTHNWNKFLKPSEIANHLRENNVTLQNMAGMEYNVIKREWNLTKGVDVNYILCGLLDLTL
>NZ_CP041215.1|WP_080717604.1|831060_831117_+|hypothetical-protein
MYNKNWIPVSSTGMTPSV
>NZ_CP041215.1|WP_015589099.1|831726_833475_+|DNA-primase
MDHIDIIKSKLLLSDIVGKKVRLIKRGDSFVGLCPFHNEKTPSFSVSNTKGLYYCFGCLASGDAFEFISQTEGLSFKEALEKLASVTGVELPKNLSITKEDNKLFLALDLAANWFAQKNQGVVDYLKQRKISPKIIDKFKIGYAPSSGLKEYLNSSGIEDRILIDIGLVNKNFHDYFYDRLIFPIQSIAGRVIGFGGRVLSSEQQPKYLNSPESQLFKKRENLYGLNFALSEIRKKQHILVVEGYMDAIALHQAGISNAVAPLGTAISAEQIKNLWRFAKEISICMDGDSAGRHAATRVAELALPILEPGYTLKFVTLPSNKDPYDICNELAYKKEDVLTALDHSTKLHSEYLWHHIIDSNLQNYEKLAPEKYSILEHKFMEYVNTISNSSIRRYYRDYFYNKASELRSSFKKQIFNSKTGATKGEYLHNKSPELIEAEQNQAVILRIAVEFPEILNRPIFFEQFSHFEFTNEMKRLQQRVIDVISNKSKLDKEALLQELKQFNVIKYVFEKTSVLNSQLNERKSAEIVWNNIVLLKELNALRKERTEARLSGNLDLEERLIEQIEQIESSIQEMQMEFIEK
>NZ_CP041215.1|WP_006280480.1|833712_834795_+|Fic-family-protein
MNWKNFRLSTRLNLEGPVIEQVYELITAVDSVKNSWQITKKLLPQTIERLTHSVIVTSSGASNRIEGNRLTDKEVEDLYKNLRVKKFKNRDEQEIAGYLEMLTLIFHDYTDIPISESSILHINNQMLLYSEKDLYHRGKYKASSNRVEAKDQNGKVVGIIFDPTPPYLVRKEVQELIDWYHWSLNNKFKHPLIIVANFVFEYLAIHPFQDGNGRTSRLMTNLMLLQQGYDFVSIVSHEKIIETNKLDYYLALNKTQSSWKSGKEDISPWLIFFLNVLKTQANEAHYILERENTEYLLSRKQLFFWEWALSLADKEFSRKDAIEALGFPPRTVEAITKKLLGMKYLQRLGEGKATRYKVII
>NZ_CP041215.1|WP_141456961.1|835004_836093_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MQLFLTRLVNKFYCLKVRNKVIIISSIAFILLFFISSAFLKKDQAVHSDNATSSFSVKTQECAPQNRTIYLNFSGTVNPLHRASLVSKISGKIIAIYLPDGEKVKRDDVVLKIEDYDRIEQAQKAKALLKQREIEYDSSHKLNKKGYGAQIQVEAAFTALQSAKADLKRLELDLENTAVTSPIDGYIDKINANEGDFVNAGQKIADVVNFDQILVVLYVSENEVSKIELGSTAQINLLDGKELAGEVSFISKIAEPKTGSYRVEVKVKVTNNKMISLQGLTANVRLPSGERFAYKIPSSALSLSDEGALGIKIVDDNNYVVFAPIEIVDHESDGVWIVANNEDKPIKLIVLGHLFVKPGDKV
>NZ_CP041215.1|WP_081600772.1|836193_836358_-|IS3-family-transposase
MSHKGCCYDNSVVESFFSSLKRELPIDTSRHSKQHIKTAIFEYIEIFYNKQRHY
>NZ_CP041215.1|WP_167482801.1|836347_836512_-|hypothetical-protein
MSSSINKQLVMDSLLMDVNKRKPAKNLLLHSDQGSQYTLQGYQYLLSIKNIDES
>NZ_CP041215.1|WP_095866555.1|836596_836950_-|IS3-family-transposase
MFFYIVTAIKYRNYVGFSASGYYKWTTRKISSRESANKELLADIQKIYQASKCRYGAPKIHAELKALGKSCNLKTVQSIMQKNGIQAILRRKFKIKKQQTDSSSQYIRPKLYCRSTK
>NZ_CP041215.1|WP_141456963.1|836951_837236_-|transposase
MVREYTAEFKLEAVKLANEQRKAGQTITKIAKDLGIRDSVLGKWMKKYNEKKSAANAFPDVAPYDKERFDLQKELAKVTRERDILKKALASQKE

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Crispr_ID: NZ_CP041215_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041215_7

895140-895281

Orphan

Consensus_repeat	Method
TCATCCCGCTACGTGTTAGCGGGATCTATGTTAAG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP041215_7

>merge|NZ_CP041215|7|895140-895281|PILER-CR
AGATCCCGCTAACACGTAGCGGGATGACGAGCTTATCGTCACGCCGCCACGAACCGTCATACCGCCGCGGTATCTCTTAACATAGATCCCTTACTTAACCGTCATACCTTAACATAGATCCCGCTAACACGTAGCGGGATGA

>NZ_CP041215|7|2|895140-895281|PILER-CR
AGATCCCGCTAACACGTAGCGGGATGACGAGCTTA	TCGTCACGCCGCCACGAACCGTCATACCGCCGCGGTATCTCTTAACAT
AGATCCCTTACTTAACCGTCATACCTTAACATAGA	TCCCGCTAACACGTAGC
GGGATGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041215.1\|WP_010962555.1\|888915_889530_+\|30S-ribosomal-protein-S4	unknown	unknown	gnl\|CDD\|235411
NZ_CP041215.1\|WP_015589073.1\|895888_897598_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|131259
NZ_CP041215.1\|WP_167482805.1\|893756_893924_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_015589072.1\|897830_899486_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173412
NZ_CP041215.1\|WP_015589075.1\|892620_893736_+\|FtsW/RodA/SpoVE-family-cell-cycle-protein	unknown	unknown	gnl\|CDD\|274232
NZ_CP041215.1\|WP_015589077.1\|886813_888802_-\|transketolase	unknown	unknown	gnl\|CDD\|223100
NZ_CP041215.1\|WP_141457351.1\|904150_904231_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_141456996.1\|906905_907475_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|271355
NZ_CP041215.1\|WP_015589210.1\|904423_904951_+\|cytochrome-c-family-protein	unknown	unknown	gnl\|CDD\|226005
NZ_CP041215.1\|WP_012673268.1\|904952_905714_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP041215.1\|WP_007552114.1\|889656_889857_+\|Fe-S-cluster-assembly-protein-IscX	unknown	unknown	gnl\|CDD\|377339
NZ_CP041215.1\|WP_141456994.1\|905889_906888_-\|tryptophan--tRNA-ligase	unknown	unknown	gnl\|CDD\|234866
NZ_CP041215.1\|WP_015589076.1\|890990_891854_+\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
NZ_CP041215.1\|WP_015589074.1\|893930_894794_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|372314
NZ_CP041215.1\|WP_015589208.1\|907536_908523_-\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NZ_CP041215.1\|WP_141456652.1\|900310_901077_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP041215.1\|WP_010962557.1\|891907_892624_+\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	unknown	unknown	gnl\|CDD\|234689
NZ_CP041215.1\|WP_141457339.1\|901314_902643_-\|IS4-like-element-ISWosp9-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP041215.1\|WP_010082513.1\|890304_890646_+\|DUF721-domain-containing-protein	unknown	unknown	gnl\|CDD\|377496
NZ_CP041215.1\|WP_006279619.1\|890683_890998_+\|50S-ribosomal-protein-L28	unknown	unknown	gnl\|CDD\|234736

Protein	Function_ID	Function_description	E-value
NZ_CP041215.1\|WP_010962555.1\|888915_889530_+\|30S-ribosomal-protein-S4	gnl\|CDD\|235411	PRK05327, rpsD, 30S ribosomal protein S4; Validated.	3.09636e-91
NZ_CP041215.1\|WP_015589073.1\|895888_897598_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|131259	TIGR02204, system_ATPase_and_permease_component, ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.	0
NZ_CP041215.1\|WP_010962557.1\|891907_892624_+\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	5.04198e-114
NZ_CP041215.1\|WP_015589072.1\|897830_899486_+\|hypothetical-protein	gnl\|CDD\|173412	PTZ00121, PTZ00121, MAEBL; Provisional.	6.81851e-10
NZ_CP041215.1\|WP_141456996.1\|906905_907475_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|271355	cd00446, GrpE, nucleotide exchange factor GrpE. GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. In bacteria, the DnaK-DnaJ-GrpE (KJE) chaperone system functions at the fulcrum of protein homeostasis. GrpE participates actively in response to heat shock by preventing aggregation of stress-denatured proteins; unfolded proteins initially bind to DnaJ, the J-domain ATPase-activating protein (Hsp40 family), whereupon DnaK hydrolyzes its bound ATP, resulting in a stable complex. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent. Over-expression of Hsp70 molecular chaperones is important in suppressing toxicity of aberrantly folded proteins that occur in Alzheimer's disease (AD), Parkinson's disease (PD), amyotrophic lateral sclerosis, as well as several polyQ-diseases such as Huntington's disease and ataxias.	2.35554e-47
NZ_CP041215.1\|WP_015589077.1\|886813_888802_-\|transketolase	gnl\|CDD\|223100	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism].	0
NZ_CP041215.1\|WP_015589208.1\|907536_908523_-\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	3.09167e-84
NZ_CP041215.1\|WP_015589210.1\|904423_904951_+\|cytochrome-c-family-protein	gnl\|CDD\|226005	COG3474, COG3474, Cytochrome c2 [Energy production and conversion].	9.81336e-42
NZ_CP041215.1\|WP_012673268.1\|904952_905714_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.51414e-20
NZ_CP041215.1\|WP_007552114.1\|889656_889857_+\|Fe-S-cluster-assembly-protein-IscX	gnl\|CDD\|377339	pfam04384, Fe-S_assembly, Iron-sulphur cluster assembly. This family of proteins is likely to be involved in the assembly of iron-sulphur clusters. It may function as an adaptor protein. In Escherichia coli IscX forms part of the isc operon, which encodes genes involved in iron-sulphur cluster assembly. Its structure is entirely alpha helical, and it contains a modified wing-helix structure, usually found in DNA-binding proteins. It binds to Fe2+ and Fe3+ ions and to the cysteine desulfurase IscS, the same surface of the protein is involved in both binding to iron and to IscS.	2.19336e-27
NZ_CP041215.1\|WP_141456994.1\|905889_906888_-\|tryptophan--tRNA-ligase	gnl\|CDD\|234866	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.	0
NZ_CP041215.1\|WP_015589076.1\|890990_891854_+\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0
NZ_CP041215.1\|WP_015589074.1\|893930_894794_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	1.79637e-46
NZ_CP041215.1\|WP_141456652.1\|900310_901077_+\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	4.72894e-33
NZ_CP041215.1\|WP_015589075.1\|892620_893736_+\|FtsW/RodA/SpoVE-family-cell-cycle-protein	gnl\|CDD\|274232	TIGR02614, Putative_lipid_II_flippase_FtsW, cell division protein FtsW. This family consists of FtsW, an integral membrane protein with ten transmembrane segments. In general, it is one of two paralogs involved in peptidoglycan biosynthesis, the other being RodA, and is essential for cell division. All members of the seed alignment for this model are encoded in operons for the biosynthesis of UDP-N-acetylmuramoyl-pentapeptide, a precursor of murein (peptidoglycan). The FtsW designation is not used in endospore-forming bacterial (e.g. Bacillus subtilis), where the member of this family is designated SpoVE and three or more RodA/FtsW/SpoVE family paralogs are present. SpoVE acts in spore cortex formation and is dispensible for growth. Biological rolls for FtsW in cell division include recruitment of penicillin-binding protein 3 to the division site. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	4.5296e-83
NZ_CP041215.1\|WP_141457339.1\|901314_902643_-\|IS4-like-element-ISWosp9-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	6.78892e-12
NZ_CP041215.1\|WP_010082513.1\|890304_890646_+\|DUF721-domain-containing-protein	gnl\|CDD\|377496	pfam05258, DUF721, Protein of unknown function (DUF721). This family contains several actinomycete proteins of unknown function.	1.26214e-13
NZ_CP041215.1\|WP_006279619.1\|890683_890998_+\|50S-ribosomal-protein-L28	gnl\|CDD\|234736	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed.	2.42165e-26

>NZ_CP041215.1|WP_015589074.1|893930_894794_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MALSKFLDPKLDLTFKKIFGTERNKNILIHFLNDILGCTEVNTIQEVEFLSTIMDPEIASDKQSIVDVLCRDSSGNRYIIEMQLTRDKGFEKRAQLYAAKAYSRQADKSGKYVDLKKIFFIAISNCTLFPDKLDYISSHTIRDEKTNEHDLKDFQFIFIELPKFPKSREEQLESVVDRWLFFFKYADETTDEDLRKIAEKSPIIKLAYDELDKFHWNEKDLIAYEERIMDLRKEEAILEYRLDLAKEEGRKEREIEVAKNLLKAGVSFNIIAQTTGLSMSEIKELQN
>NZ_CP041215.1|WP_167482805.1|893756_893924_-|hypothetical-protein
MVTKNISFCDKRHSDVFVVQHVSGIFSEKFPHNSFRFHNISCHSSEQIPILEGYQ
>NZ_CP041215.1|WP_015589075.1|892620_893736_+|FtsW/RodA/SpoVE-family-cell-cycle-protein
MNIKLWYRTLDYYLILPVFFLLTISFILVYSASPVIAQRLSLPQDYFIRRHTIYIVLSLITLVTFSFLNTRTILNLSFAGFILFTILVAIAIILGIEVKGAKRWLHIVKISVQPSEFVRPFFSVVIASILASEMKFKIHISIIIFLLVFVLLLLQPDFSMSMLLTYSFIGQMFIACIPFLYFLCIIGMATTGTTIAYLCLPHIKQRIYNFVFFTQRDNFQVTKSLEAFKRGQLTGVGPGEGSVKASLPDCHTDFVFSVLAEEFGLITCLATLMLFGIISARLLYVAYRENELFNLLVILGISMQFITQFIINIGVTLSVFPTTGITLPLLSYGGSSLLSSSIALGIMLSFSRNQAIALKFRERIMLGRYMD
>NZ_CP041215.1|WP_010962557.1|891907_892624_+|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE
MSTIKIEKKSQLVKEVFDSVASRYDTMNDIMSLGMHRLWKDKMVNSVHFTKNSKVLDVAGGTGDIAIRVVRKEPSAKVTVCDINQNMLNRGRDKAINSNQINFDWVCASAESLPFEDSEFDYCTIAFGIRNVSDRKKALNEAHRVLKPHGKFICLEFAPMHYQNEIFTKLYDLYSFKVIPKIGSIVAKDKSSYEYLVRSIREFPTQADFKMEIEEVGFKNVEFHNMSYGIVALHIGTK
>NZ_CP041215.1|WP_015589076.1|890990_891854_+|lipoyl-synthase
MHSKPQWLRAKAPTGEVFNETLNIVKLHNLHTVCEEAACPNIGECWNKRHATVMILGSVCTRACAFCNVATGIPDKLDPHEPENLAKAIKKLNLKHVVITSVDRDDLPDGGANQFIQCIEEIRKITSETTIEILTPDFLNKKGAFEAIAVASPDVYNHNIETVPRLYAKIRPRARYFHSLYLLKMVKQINSKVFTKSGLMVGLGETKEEILQVMDDLRSAEVDFITIGQYLQPTPKHAKLDRYVTPEEFEHYKYIAYSKGFLVVASSPLTRSSYHAEEDFNRLKACR
>NZ_CP041215.1|WP_006279619.1|890683_890998_+|50S-ribosomal-protein-L28
MSRVCELTNRKKSFGNKVSHSNRKTKRTFLLNLHKVTLTSDILNKKFRFRVATRTLRTIDYKGDLDAFLLNTRTIKLSEKAQKIKRRLKKVLVKQEVELAVSDA
>NZ_CP041215.1|WP_010082513.1|890304_890646_+|DUF721-domain-containing-protein
MLKRSGPKKLKSIIENYALKCMKNKISKNEIRLILNWRNIVGKEIAECTKPKKISYAQNINSGVLHLVVTNGSKALEIQHMISLIIEKITIFFGYKAVYGIKIKQESIDYLTI
>NZ_CP041215.1|WP_007552114.1|889656_889857_+|Fe-S-cluster-assembly-protein-IscX
MKWLDIEDIVEALEEKFPNENIISIRFTELKKKVLSLEEFDDDEKRCNEKILEAIQAAWIEERLTA
>NZ_CP041215.1|WP_010962555.1|888915_889530_+|30S-ribosomal-protein-S4
MTTVITRKYRISRRLGVNLWGRAKDPVNKRKYPPGQHGILGFKKLSDFGKQFAAHKKFKFYYAISSKQLRRTFLDAYNRKGYTADNFIGILESRLSSVLYHSGLVPTIYSAKQLISHKHVTVNDKVVNISSYRVKPGDIIKIRERAAKIPVVVEAEQKQERKAPDYLEADSKEHSVKYLRSPQYSEVPYSADMEVNLVVEFYSR
>NZ_CP041215.1|WP_015589077.1|886813_888802_-|transketolase
MNHSHLESMANAIRFLSIDAVQKANSGHPGMPLGMADVATVLFAKYLNHNPDDSKWFNRDRFVLSNGHGSMLLYSILYLTGYISIDELKNFRQMGSKTPGHPEFGLTSGVEATTGPLGQGFAAAVGMALAESILEKQFRINHYTYVMLGDGCLMEGISHEAASLAGHLKLNKLIALFDDNDISIDGATCLSCSDDVEKRFLAYGWNVDKIDGHDFDAISFAIEQAKKSDKPTMICCKTIIGKFSSRAGTSSAHSGAFSEEDIKQMREKLNWNYEPFHVPEDVKNAWKKTVERAKQNYNSLSFQCVTLESREKNEELKRRLDKRLPDNIAGVLADLKKQICELMPNEATRSSFGRVMELLTQHMPELIGGSADLTGSNCTKYKHMQVINSNNYSGSYVHYGVREHAMAACMNGMALHGAILPYGGTFLVFSDYCRPAIRLSALMKQQVMYVMTHDSIGVGEDGPTHQPIEHLASLRAIPNLYVFRPADAVETLECVSIALEKKESPALFALSRQNVSYMRKFYSDIDQSANLSKFGAYILCECSKELKVTIFATGSEVEIAVETREKLQEKGIGTRIVSMPCWRLFDEQSDEYKAAILNNDSIKVAIEAGSEMGWHKYIGSNGIFIGMKSFGESAPYKTLYEHFNINADHVVKCVCEKLVYIQ
>NZ_CP041215.1|WP_015589073.1|895888_897598_+|ATP-binding-cassette-domain-containing-protein
MRSNIRQLFYYIKPNLSYFIIAFIAVLFSALMILLFGRGLSNIIDSGTEHDFTTKLLVAILIVLAISLTAFTRLYFIGIGSEKVIARIRYDLYSSITNLQPSFFENTGVQDVISALVTDTSVLQSIINSSLLTILRNFVILIGSVAMLLYTNIQLTAYAAAIIPILLIIMTSLGKKVRSYARFAQDKLSELASFSEENFRSIVTIKSFVLEENEKIRFKEHLNSVSKSYVKLVLLRAILVTLVITCVIGSLVVLLFFGIKEVLSNNITIGKLSSFVFYSALAAGAINNLSDNISDLQRGLGIVERLFEFKNMKSSIADPDDPIKICSVQKGISFNGVTFFYESQSDKPALNNVSFSIEAGQAVSIVGPSGSGKSTILKLLLRFHDPNKGSITIDGHNIKSIALNDLRSLFGLVPQDHMIFSCSIMENILYGKPGAEYEEVKQAAISAYAMEFIDKLPDKFDTFVGKRGLKLSEGQKQRIVIARAILNNPQVLILDEATSALDYKSENLVQKALSKLMQNRTTIVITHRLSTALKTDKIIVINHGKVEEVGTHDSLISKDGLYAKLAKIQ
>NZ_CP041215.1|WP_015589072.1|897830_899486_+|hypothetical-protein
MLKHNYSDKINNRYSYTNKFSYSDEGVDETIKDKITTEDQVVTDDKVVTEDQVTGLRDQIEKEKKDDEFTRETLEECKDRAKKAEDGAKKAVKRAEDDAKKAIKQAHGEAKEAKEQFAKCEKDAERIKEDAGKAINQAKNDAKAEAAEAVKQAHGEAKEAKEQFAKCEKDAERIKDDAKQAIERAKDDAKAKADLAIKQAQDEIEKVKAEAKQAKADAGKAKEEAEGIKEAFVQCEKKVEKAKEEVVKCKIGMAKAEVEWYKKEAEECKKEKGIGTGKPDTGEKGDETGTNKPDTDEKEDETGKASVITSQEITLDCSQAENCGAYASWYTAYNKIGHQGFNTSDLLKELYPEMYSNPKIATYIEKGIEGYYGVVNFKFAFTELFDSAHYFSNMSCKKCMDNPQEIACQDDEIKSFCYPAGYHNNKEYNKSFFMRESCPDLIRESDRTIVAKAKQIAPLILVNTLGQMIDKEGNNTQILYSSLKPYLKANGKIKDCGVDKKCEDFAKIMKKVAWDSDKEVLLKTVFDSTEKTNPYYYDNEDSLVSVDTNFI
>NZ_CP041215.1|WP_141456652.1|900310_901077_+|IS5-family-transposase
MYPSDISDKEWEILEPSVAQGAVGRPRKHNIRTIINAIRYIMKGGCQWRMLPKDFPPWKTVYDYFLRWRNSGKLEEIHNMLVKKVRKMVGKNEIPSVGIIDSQSVKTTQKGDPEDMMPGKKIKGRKRHIIVDTIGLIITADVHSAGIQDRDGALNLFTQAKRKAPTLQRFLADQGYIGKLQNYCLLKTGCLLTITKKAADAVGFQVIPKRWIVERTFAWLSNFRRMSKDYEHSPLTSKTNISFNMITIMLAKLAA
>NZ_CP041215.1|WP_141457339.1|901314_902643_-|IS4-like-element-ISWosp9-family-transposase
MDRIACLSKDLNEFFNEKADEISITVGFIKRKRKLNGSSFIKAMVFGNIGVDDCSIETMCQLLNEDSIEITKQGLDFRFSEEAVEFMKKMYNEALCLFKKSLQIDCKILQQFGSVKLLDSSYISLPSSMEDMYKGYGSSYRDCENNTKSGIKLQLVFDYLNQALDKLNFMEGIRSDQGYRDYLNGLSANDLLIFDLGYFVPSSFKQIDEAGAYFVSRYKSDTNIYDIETNQKIELLEYLEGQLSSEKEVLLGKEVKIKVRIICQKLTEEQSMARRRKANKLAKSHGYTSSQKNQKLLDWSIFITNVPESKINAEQILTVYRVRWQIELLFKLYKSHINLDKLKGKTNPFRVLCELYAKLCAILVFHGMIGCVKLKKNTELSLTKAFIELKRRVRELFLILNNIVNNLKIFLKKLTIIWSKFSLKDRYRKTRVSTLSSLHSLT
>NZ_CP041215.1|WP_141457351.1|904150_904231_+|hypothetical-protein
MPVSGHWDDIIGTLGLHPDNRYPATC
>NZ_CP041215.1|WP_015589210.1|904423_904951_+|cytochrome-c-family-protein
MELNKIAASILLSGLIIMIVSNVVDMLYSPEEYKIEHQTIVAAGSNEFQQKIEQVALDIGALMQNASFEKGKSAAKKCIACHSFEKGGMNKVGPNLWNIVGNKKAHLGNSFNYSKAVLDRGGKWGYEELFAFLKNPKAYIKGTRMAFAGISNPQEIADLVSYLHQLSDSPVALPK
>NZ_CP041215.1|WP_012673268.1|904952_905714_+|alpha/beta-hydrolase
MDYCKLFDGNNGHIAYRKLQGKKASVVFFGGFASNMDGTKATAIYKFCQENDVALVLFDYFGHGHSSGNFIDYTISDWQKNCAKVMSELTSDKQIIIGSSMGGWLMLLTALQFPEKIAALIGISSAPDFTEDLIFKQLSGKQKEELDSKGVIDFTSEHCTYKITKNLIEDGRKNLLLNKKTIDINCPVRLLHSINDKDVPYQTSLNLAEKIKSTDVEVHLIKSAEHNMSDNHSLEVLFKTIREFCNQTAFCDF
>NZ_CP041215.1|WP_141456994.1|905889_906888_-|tryptophan--tRNA-ligase
MTSIVFSGIQPSGALHLGNYLGAIKQWIDLQDKYKSLFCIVDLHAITANKLPASELKSNIFKTAAAYIACGIDTEKSIIFSQSTVSGHAELGWLLGCYTPIGWLNRMTQFKDKAGSDKQKASLGLYSYPVLMAADILLYQTKYVPVGDDQKQHLELARDIASAFNNHYKLDYFIVPEILTLDCTSRIMSLRDGTSKMSKSDPSEHSCINLDDTDDLIVKKIEKAKTDSILGFATLKCRPEISNLINIYSVLSNVNAEKVCEEVNKHDMKHFKKELADLIISVISPIREKMNDLLKDQFHLHEILKKGTKKAAEIATHNIKEIKDIIGFAQYL
>NZ_CP041215.1|WP_141456996.1|906905_907475_-|nucleotide-exchange-factor-GrpE
MSDSSKEKKKKFADMVSRQKGDDQQSDNHKQTDDLNEDLNTLKERAAQLEDHLRRAVADNENVKRIMQKQISDASDYAVTKLARDMIDSCDNLKRVMEILKDGDPVHEGIKVAYQKIINDLKKHGIEEVDPLGELFDSNLHQAVVEREDNEKKPGTIVEVLQTGYTIKNRLLRPAMVILSKKSADCGSD
>NZ_CP041215.1|WP_015589208.1|907536_908523_-|polyprenyl-synthetase-family-protein
MLNTDLTNSDKLDDIVSSDLSAMNDFVFKNVNDEDAKLATDIISHLVRSGGKKIRPKLVFIICKMLNYSGENRINVAASVEFIHNATLLHDDVLDESEARHGVKTANKIWGNKSSILVGDLLLTLAFRWLIECGNLNILSILSKASHLLVKGEIKQMTARFDPHTVRENYFDIIGEKTASLFSACCEAASTVSGATNDETERLKNFGFNFGMAFQIVDDMLDYTANQGTSGKQVGKDFFEGKVTLPAIIAYEKGSPAEQKFWEKCFSSARHNFDQALHYINHHNAIQLSMEKARHYINMAQNDISTFSDSFYKTTLIDFLNASIERRM

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Crispr_ID: NZ_CP041215_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041215_8

940851-940990

Orphan

Consensus_repeat	Method
TGCATTAACCTCTGCTCCTTTTGCGATTAGAGTTTTTACTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041215_8

>merge|NZ_CP041215|8|940851-940990|CRISPRCasFinder
TGCATTAACCTCTGCTCCTTTTGCGATTAGAGTTTTTACTACATCTTCGTGGCCATTTTTAGCAGCAAGATGTAAAGCAGTACATCTATCATCATTTTCTGCATTAACCTTTGCTCCTTTTGCGATTAGAGTTTTTACTA

>NZ_CP041215|8|6|940851-940990|CRISPRCasFinder
TGCATTAACCTCTGCTCCTTTTGCGATTAGAGTTTTTACTA	CATCTTCGTGGCCATTTTTAGCAGCAAGATGTAAAGCAGTACATCTATCATCATTTTC
TGCATTAACCTTTGCTCCTTTTGCGATTAGAGTTTTTACTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041215.1\|WP_141457013.1\|947691_948168_-\|signal-peptidase-II	unknown	unknown	gnl\|CDD\|237813
NZ_CP041215.1\|WP_007550037.1\|949157_949496_+\|glutaredoxin-3	unknown	unknown	gnl\|CDD\|239510
NZ_CP041215.1\|WP_015589194.1\|933987_934596_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_015589191.1\|938942_939734_-\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|234599
NZ_CP041215.1\|WP_007548863.1\|939740_940190_-\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|235455
NZ_CP041215.1\|WP_006279382.1\|943724_944141_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_012673206.1\|951413_952013_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239313
NZ_CP041215.1\|WP_010082493.1\|948164_949097_-\|riboflavin-biosynthesis-protein-RibF	unknown	unknown	gnl\|CDD\|235536
NZ_CP041215.1\|WP_015589192.1\|936506_938252_-\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|226969
NZ_CP041215.1\|WP_141457011.1\|946321_947662_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP041215.1\|WP_015589188.1\|945015_946335_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP041215.1\|WP_010082448.1\|932530_933013_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|235782
NZ_CP041215.1\|WP_141457008.1\|934600_936061_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_141457015.1\|949611_950484_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_015589196.1\|931639_932521_-\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
NZ_CP041215.1\|WP_015589197.1\|929612_931601_+\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_CP041215.1\|WP_015589198.1\|928075_929398_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|183594
NZ_CP041215.1\|WP_010962821.1\|943201_943732_+\|Na+/H+-antiporter-subunit-E	unknown	unknown	gnl\|CDD\|237159
NZ_CP041215.1\|WP_015589189.1\|944445_945006_+\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|187714
NZ_CP041215.1\|WP_065094808.1\|933167_933983_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP041215.1\|WP_141457013.1\|947691_948168_-\|signal-peptidase-II	gnl\|CDD\|237813	PRK14775, PRK14775, lipoprotein signal peptidase; Provisional.	2.14303e-38
NZ_CP041215.1\|WP_015589191.1\|938942_939734_-\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|234599	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed.	5.43631e-106
NZ_CP041215.1\|WP_007548863.1\|939740_940190_-\|SsrA-binding-protein-SmpB	gnl\|CDD\|235455	PRK05422, smpB, SsrA-binding protein SmpB.	2.88196e-80
NZ_CP041215.1\|WP_007550037.1\|949157_949496_+\|glutaredoxin-3	gnl\|CDD\|239510	cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including E. coli GRX1 and GRX3, which are members of this subfamily.	5.10589e-38
NZ_CP041215.1\|WP_012673206.1\|951413_952013_+\|peroxiredoxin	gnl\|CDD\|239313	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric interface in atypical 2-cys PRX and PRX5) at the opposite end of the monomer to form the stable decameric (pentamer of dimers) structure.	8.00814e-97
NZ_CP041215.1\|WP_010082493.1\|948164_949097_-\|riboflavin-biosynthesis-protein-RibF	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	9.23812e-114
NZ_CP041215.1\|WP_015589192.1\|936506_938252_-\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|226969	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only].	0
NZ_CP041215.1\|WP_141457011.1\|946321_947662_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	5.76615e-70
NZ_CP041215.1\|WP_015589188.1\|945015_946335_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	3.83039e-62
NZ_CP041215.1\|WP_010082448.1\|932530_933013_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|235782	PRK06341, PRK06341, single-stranded DNA-binding protein; Provisional.	3.02792e-63
NZ_CP041215.1\|WP_015589196.1\|931639_932521_-\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	6.91446e-105
NZ_CP041215.1\|WP_015589197.1\|929612_931601_+\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_CP041215.1\|WP_015589198.1\|928075_929398_-\|glutamate--tRNA-ligase	gnl\|CDD\|183594	PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional.	0
NZ_CP041215.1\|WP_010962821.1\|943201_943732_+\|Na+/H+-antiporter-subunit-E	gnl\|CDD\|237159	PRK12651, PRK12651, Na+/H+ antiporter subunit E.	1.82371e-49
NZ_CP041215.1\|WP_015589189.1\|944445_945006_+\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|187714	cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART). Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities.	1.28404e-94

>NZ_CP041215.1|WP_007548863.1|939740_940190_-|SsrA-binding-protein-SmpB
MEVIAENRKARFEYFILEEFEAGMVLLSSEVKSLRERKVNISDAYVVEKNSEVWLHNMHIAEYKAANRKNHKPKRERKLLLHKKEINKLIGQIKTAGITVVPLSVYFNDKGFAKTKIAIVKGKKLYDKRATIKQREWDREKSRLSKNNL
>NZ_CP041215.1|WP_015589191.1|938942_939734_-|prolipoprotein-diacylglyceryl-transferase
MSLNPVIFSIGPVSIYWYSLAYVLGIVFAYWYLHRLDDQKIFTKNFYDSLLTATIIGIILGGRLGYVLIYDPVLYISNPIEILKTWEGGMSFHGGAIGVLLAVIISCRRHNIPIFYALDLVSCGVPIGLFLGRIGNFINGELFGRVTTMPWGMVFPESGDNLLHHPSQLYEALFEGLLLFAVANSLFFLTRIRLYHGALTGIAVMWYGIARFFVEFFREPDYQIGYLWLDLTMGQLLSIPMVLLGMLVYLGALNLKFNTKSVT
>NZ_CP041215.1|WP_015589192.1|936506_938252_-|type-I-secretion-system-permease/ATPase
MEITPSIKKELKQSTLYVCLEKCKSAFWFIFWFSAGINLLMLFLPLYTSQVLDRVISSESVSTLTMLTIITLSAFACSAMLETCRYLAMAKIGDWIDKTATPDLIVRSIRLTSVQSSTSSGEAIRDLGVIKNFITGNGIFSLFDTPWSLIYLVVIFMIHTSTGFIAITGIIILVSMAIWNELATKRILQETNEETIRNINAIDVATRNAEVVEAMGMSEFIVSDWCKRNDQNRAMQIKAQNRSNVITGITKFLRSTLQISVIGTGALLAITAHKTAGSIIAASILMGRVLAPFDAAVHTWKFLNQARMSYGRLQRLILTSPKREQTMALPEPEGKLEFDRVFFTPYGSNKPTVKGISFIIDPGDVVGVIGASASGKSTIAKLTVGVWKPISGVVRLDGADVYTWNRENFGNYVGYLPQDIELFNTSVKANIARMRPDPNPEEIIKAAKIAGIHELILSLPNGYDTTIGGPGGVTLSGGQKQLLGLARAFYGHTKLLVLDEPNANLDSNGEACLINAIGIARKQNTTTVIITHKLPLLSVVDKVILMSDGVIYAMGPKDEILSKLVAPSSSTTEDERSSANG
>NZ_CP041215.1|WP_141457008.1|934600_936061_-|hypothetical-protein
MSICFVNMFSSKSKSKFMLSIGEEGIMLLYFKNNTLNKRYFVKGKNDKAVSDLISCLSSDKKAPLYLVLNHADQNYSLQFITRANKISAYLSAKTKMEHFSRNNDISSVFLVEKPNKFNQNWCYLLVSSKAKHLVEYWLNVFIEIGSNFKGILMFPIEISNITKKILHKDPNNWKIIVATTKTGGYRQVVLKENKMVFTRLTSFTNDNLPGIIAGGIYQEVQDTIRSLTKFGFEKNNPIDLCIIVSEDIKASLSVINFSENSVNILTPYELGKLLGAELAISEKDNFCDTIILFHSFKNKLAAIFNTKETKEFYLFNYLYLNSPRIFLYFALVLVITNTLCLLNLYSNFNVADNLSAKQNTLNNQLTKLSQSYNVKKIDEIYDFININNILSKIEYSPLTQVKYVEKLKIPGIELRSFEWNYNEAKSYITTTLKFNFQSGKNISHQYEKLRKNLNDNFRTYDINISSLPAAKEQNLSIDVEIGEAM
>NZ_CP041215.1|WP_015589194.1|933987_934596_-|hypothetical-protein
MTISQLKRKATIQFISYLLLSVGLIGLLTYVVIYNEKIYNKNQIAIDKIRSINLQITGIQKKEVVLNKNLDLWKKISSSNLHSSRYIANLNFELSKLYKKHYILEPEISISIPEEVELHNKSERTKVIKSEVVLNLSSISDKHIFLFLQSIPNLPGYVMIKSLILNKQRNIDAATMNQILNGNMIEIVRANIVFDWYTILSR
>NZ_CP041215.1|WP_065094808.1|933167_933983_-|hypothetical-protein
MNIKLFFIFTLLISNVNAYCSCEDIIESIEICKEYSCRQYIGNEDFIEHKILGLNSGNLCVYIEKQGNDEMVCHHSQYGMMIEKRYFESILKVGNQEIDDFIDIANLRAKECFFINNQKLSYTDRDDIIREAVESDFDVLSQYSNVKSIFFDEEPVNRMVNEMEKFNLRSSRAVKEEVSDNFNCKVVSLDSILYLSPDTWKIWVNGKLFINTKDLKVHSVTENYVTFVWTVDQKAIKKHANDSQNVYFGYGSIMFTLYPKQKFDLDGLSIK
>NZ_CP041215.1|WP_010082448.1|932530_933013_-|single-stranded-DNA-binding-protein
MSGGTINKVILVGNLGKDPEIRTTQNGKEMASFSIATSESWTDKLSGMRSEKTEWHNIVIFSEGLVKIVKDFARKGSKVYVEGSLRTRKWTDQNGGERYTTEVVLYNFNSALTLLDSRNSAPNSDYKPSEYKQGETEQKDKHESFDNDIKDELLDDEIPF
>NZ_CP041215.1|WP_015589196.1|931639_932521_-|4-hydroxy-tetrahydrodipicolinate-synthase
MKSTFLWTACVTPFNCNGDSIDYSSLQRLLTMQVKAENGVVLLGSTGESLSLTDSEKRTLVEFVCKLKLNTKIIIGVPGVNLYQTLEWLDFCKGMPIHGYLMTTPIYAKPGIMGQTLWFEKLLEKAHVPVMFYNIPSRAGINLHAETVRNLSSHEKFWAIKDSSSTVDTLAQYKKVAPNIEVFCGDDNMISDMAAYGAAGLVSVASNVWPYVAHEYVKKCLNGRNPQADIWQQACEALFTASNPIPTKALLHDIGLIEHQTVRLPLSTEDLPSVEKLRQVNKMILGWKELATL
>NZ_CP041215.1|WP_015589197.1|929612_931601_+|NAD-dependent-DNA-ligase-LigA
MTNLEKMREKLQDQINYHNVLYHQKNKPEISDAEYDELKKKLAEIEPEIYATQDSVGAPPDERFSKVEHQEPMLSLENAYDEQGVEKFLSKIKRFLIEDKIEILCEPKIDGLSFSAIYEDGRFVKAATRGDGFVGEDVTHNVATIKGFPKFLQGVQGRLEVRGEIYIGNSDFLKLNENDEFANPRNAAAGSLKQLDANITASRPLRYFAYSLIGGAEKSQSEVLNKLEALGFCVNEHQSLTSSLDGMLKFYNEVYNCRYNLDYDIDGIVYKVNDLVLQNRLGNTHKAPRSALAYKFSAVYAKTKLNKIFIQVGRTGVLTPVADLVPVNIGGVLVSRASLHNQDEIKRKDIREGDIVTIKRAGDVIPQIVEVSRDSRLPNTPEFVFPEVCPECGSKVRQVEGEAAVRCPEEFACKAQIIEKLKHFVSKDAFDIVGLGDKQIEFFYDLGLIKQIHDIFTLEEKLDEFNLEGQSGWGEKSIANLLNSIQSRRVITLDRFIFSLGIRFIGQVAAELLADYYVSYNNWYNSMIELSSDNTELVSIDGIGKKVAESLESFFSKEHNIKMLNDLTACLQILPVSSNSSNSVLNNKIIVFTGKLLAMSRGEAKVRAKTLGAKVSSHLSAKTDYLIAGEKPGSKYKKAVELGVEILDEDQWHKVISLGVFK
>NZ_CP041215.1|WP_015589198.1|928075_929398_-|glutamate--tRNA-ligase
MLTRFAPSPTGYLHVGNVRTALVCWMYTRNQNGKFLLRFDDTDLQRSDVKYINDIIQDLKWIGINWDASFKQSERFERYNEVFLQLIKEGHIYACYETREELDIKRKLQLKQGLPPVYDRSALLLTEQEKISYEQEGRRPHFRFKLDRNEVVKWNDEVKGEINIATSSISDPVVKREDGIYTYMLPSVIDDVDFNVTHVVRGEDHVTNTAVQLQMIKALKAKIPTFAHLSLLHFDDSKISKRAGVLDIKSIKEDEIEPMALVSYLVKLGTSNPIEACACMQSLIDSFNIKKFSSASVQFSLSEIYKLNSKVLQQMPFEMVQDRLNQIGVDSSEFWYFIRNNIERFSEVAKWWKICKSDIEPVILDKELIKIAFNALPQGDCNENTLSEWVKTIRQTVDIKAKNLFTQLRSALTGTETGPELAKLLIFIGKENIIARLKEK
>NZ_CP041215.1|WP_010962821.1|943201_943732_+|Na+/H+-antiporter-subunit-E
MKNLNFRKEIKFFSLSFIILFVLWTVLSGYFEPFFIFCGVFSSIFTSFIFRRLINAERALSQILNSTSRLSFYKLVSYIPWLMYQIILSSVYVTKKVLQLKSKLEPIIILRKCKGHNDESIALFANSVTITPGTLTINVESKQKTYFSTMYLIDKDLESGISEIENKILKILRSVK
>NZ_CP041215.1|WP_006279382.1|943724_944141_-|hypothetical-protein
MSKLPNNAKIGKSQVTQWEVIKNCEYADNCLSKIVTLYVIRITQLSDFYTSDEPEINTVLARISVTSENVFLNKATTIEVMEGIFPYKFNSKKRNNILRLEDLYNYLCSIVNNSLPKEMLESLVREYKDAVNLFKAIT
>NZ_CP041215.1|WP_015589189.1|944445_945006_+|phosphoribosylglycinamide-formyltransferase
MKKIKLGILISGRGSNMQALIEACQDQNFSAEVACVITNNSEAAGLKIAEQAGISAFIVKDKPLDAGKIHEILVQHKVDLICLAGFMRILKADFLSKWHNKVINIHPSLLPSFKGLNAQEQALKAGVKITGCTVHYVTPEVDAGAIIAQVVVPVLPADDIQSLSERILAKEHKCYVEAVRSIAEDI
>NZ_CP041215.1|WP_015589188.1|945015_946335_-|insulinase-family-protein
MRISKFVLLFFFCLSFNLQASGSLNIEEVTTRKGFKFLFVENCALPKVSLNISFKDAGYVYENAEKQGLTWFTSLIIQEGAGKNDAKDFAKKLEDKGISLNFIADLEAFRVSLNTLSDNLEEAISLLSDTIMRPKVDPEGLNRVFEKAKVNFNNLEKSPYFVAGKELDTLLFKKHPYSKSVYGTLDTIMNITRDDVLTYIKRNFAKDNIVISVAGCAKKEEIITLLDKYLSKLPSKRSKVRKIPVKNNFGSAESKNIFMDIPQSVILFAQKGIAYEDPNYYNAGVLIDALGGMRLNSILMTELRQNLGITYGVYASIISNKHGNIISGFISTDSSTAGKAISAVKDTFSRIKKQGIDEQLFKDAKIGLVNNLVLFLSNNTNTATLLDNMQINDRDVNRINNYANIINDVKLEEVNELASSLLEPENLFFVEVGKNAQGQ
>NZ_CP041215.1|WP_141457011.1|946321_947662_-|insulinase-family-protein
MLHKLFSFLILPAFFFTYPISSNALNIEYNIKHAKLDNGLDVYIVPNHRIPAVLHAVIYKVGGMDDPIGKAGLAHYFEHLMFETTGKFTDIEATMSSIGAQFNAFTTKEYTCYFELIPKKDLPLAMEVEADRMGSFNVTQDKIDREKNIVLEERKMRFDNHPNNLLWEEMNSAFYRTGYGRSVIGWESDIKTYNLDDITRFHDNYYHSGNAILLIVGDVELDEVVKLAEEKYGEIKAKPVMRNYPNQDPVHNAGLSVTLESTEVKEPVLYFRYRVPLFEHINEASAAHLAVEILGGGKSSKLYNDLVLDEDVAVSVFAYYNSLAFSDGYIDIQVIPKSGVNLDIVERELDNAINNFMSKGITDEELQSSKYRYKAAQFDNLSDLTHIAMFYVPHLALGIPLDEIDISYSKIDDVNLEDVNNKIRTIFSSNKLIGRLLPKGDNNENK
>NZ_CP041215.1|WP_141457013.1|947691_948168_-|signal-peptidase-II
MKKLCLVVILIIVLIDQTSKLYINSLIDEGESIEIASFIKLVEVWNSGISFGMCSALPHGGFFFSAFSILIIGILAYLIYKSDDQSTYLGFSLMIGGAIGNVVDRIYWGAVYDFIYFHIDDWYWPAFNLADLSIVCGMFTLLYKWYIYDMLISKQNGE
>NZ_CP041215.1|WP_010082493.1|948164_949097_-|riboflavin-biosynthesis-protein-RibF
MKIIYNCEQGIENNIALTFGNFDGIHLGHEFAISTLKKVAQERGLPSAVLTFEPHPSTVLFGRNNFRLIDQEQKKELISSYGIDYLYIINFNRGFSEVSCDDFISEILIDKYGAKHIIVGENCTFGHKRLGNILTLEKYSEIYGYSLTKLEPLTIDGKICSSSSIREYVQRGEIEIANKLLGRPYQVSGVVTKGACRGREIGFPTINIPIEDCMIKPKFGTYYARVTFPDSNPNWLYGVVNIGMRPTFKDLKKPIIEMHIFDFDEDVYSHKVNIQLLKFIRSEKKFHSIEELTKQINYDILKVYRLKANL
>NZ_CP041215.1|WP_007550037.1|949157_949496_+|glutaredoxin-3
MKNVVIYVKKGCPYCIRAKDLLDKKGVKYEEIDVLKNSDLFNDIKSKYNVRTVPQIFINDKHIGGCDKLMDLEKEGKLDDMLNNNDNHTDVTTYTNSNDECGECVIPHDDFM
>NZ_CP041215.1|WP_141457015.1|949611_950484_+|hypothetical-protein
MTKNISIISRNLISIELVNKQDLENFIKIFTVLDKHIAAKTLFTEELRIEYKQHNGIEVVELLKDTDFTYHEVENVLNHLSKHGMKVPSSVIAHTLFAAYNHALEFKDVAFSFSEGSPQFNIRVSKNTFIITPMSEENLELNSQSSKKLIESLQSEKNIYDCIVEENTIKVIVHSEIHQAINLIIKSLIKSRLLAKEEEGKFKEKLRQLAFKDQAFVEYSSIKTISRYPHNHPLRKHESVTKDIENILCDFIANENSEFAIERLNRLSSAVSPDTPRIITKTIDKLVKFH
>NZ_CP041215.1|WP_012673206.1|951413_952013_+|peroxiredoxin
MNLVTKSAIDFTASSVLSDGEIVDDFCLSKRIKNKYAVLFFYPLDFTFVCPTELISLNNRINEFAKRGVEVIGISVDSKFSHYKWRNTPVNDGGIGEISYTLVSDIKKSISRDYGVLYDDSIALRATFVIDDKFIVRHQSINDLPLGRNIDEFVRIVDAIKHNEEHGEVCPAGWKKGKPAMQASDEGVADYLNSYSEEL

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Crispr_ID: NZ_CP041215_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041215_9

951116-951235

Orphan

Consensus_repeat	Method
GAGATACCGCGAATGAATCGCGGTATGACGGTTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041215_9

>merge|NZ_CP041215|9|951116-951235|CRISPRCasFinder
GAGATACCGCGAATGAATCGCGGTATGACGGTTCGCGGTGGCATGACGATAACCTCGTCATCCCGCTACTTGTTAGCGGGATCTAGAGATACCGCGAATGAATCGCGGTATGACGGTTCG

>NZ_CP041215|9|7|951116-951235|CRISPRCasFinder
GAGATACCGCGAATGAATCGCGGTATGACGGTTCG	CGGTGGCATGACGATAACCTCGTCATCCCGCTACTTGTTAGCGGGATCTA
GAGATACCGCGAATGAATCGCGGTATGACGGTTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041215.1\|WP_141457013.1\|947691_948168_-\|signal-peptidase-II	unknown	unknown	gnl\|CDD\|237813
NZ_CP041215.1\|WP_010082493.1\|948164_949097_-\|riboflavin-biosynthesis-protein-RibF	unknown	unknown	gnl\|CDD\|235536
NZ_CP041215.1\|WP_022626339.1\|958978_959230_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_141457017.1\|953027_954545_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|372319
NZ_CP041215.1\|WP_006279382.1\|943724_944141_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_015589186.1\|951999_952938_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NZ_CP041215.1\|WP_141457018.1\|959454_960261_-\|DUF2163-domain-containing-protein	unknown	unknown	gnl\|CDD\|274038
NZ_CP041215.1\|WP_015589183.1\|955464_956844_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|235779
NZ_CP041215.1\|WP_007550037.1\|949157_949496_+\|glutaredoxin-3	unknown	unknown	gnl\|CDD\|239510
NZ_CP041215.1\|WP_012673206.1\|951413_952013_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239313
NZ_CP041215.1\|WP_141457011.1\|946321_947662_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP041215.1\|WP_015589188.1\|945015_946335_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP041215.1\|WP_141457353.1\|940310_942869_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|165207
NZ_CP041215.1\|WP_141457015.1\|949611_950484_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_015589184.1\|954541_955462_-\|tyrosine-recombinase-XerC	unknown	unknown	gnl\|CDD\|274042
NZ_CP041215.1\|WP_044471264.1\|958315_958597_+\|transposase	unknown	unknown	gnl\|CDD\|290455
NZ_CP041215.1\|WP_141457020.1\|960697_962677_-\|porin	unknown	unknown	gnl\|CDD\|173412
NZ_CP041215.1\|WP_010962821.1\|943201_943732_+\|Na+/H+-antiporter-subunit-E	unknown	unknown	gnl\|CDD\|237159
NZ_CP041215.1\|WP_015589182.1\|956836_957946_-\|PQQ-like-beta-propeller-repeat-protein	unknown	unknown	gnl\|CDD\|379140
NZ_CP041215.1\|WP_015589189.1\|944445_945006_+\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|187714

Protein	Function_ID	Function_description	E-value
NZ_CP041215.1\|WP_141457013.1\|947691_948168_-\|signal-peptidase-II	gnl\|CDD\|237813	PRK14775, PRK14775, lipoprotein signal peptidase; Provisional.	2.14303e-38
NZ_CP041215.1\|WP_015589184.1\|954541_955462_-\|tyrosine-recombinase-XerC	gnl\|CDD\|274042	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerC, one of two closely related chromosomal proteins along with XerD (TIGR02225). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and homologs of XerC on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerC, as some apparent XerC examples score in the gray zone between trusted (450) and noise (410) cutoffs, along with some XerD examples. XerC and XerD interact with cell division protein FtsK. [DNA metabolism, DNA replication, recombination, and repair].	2.6083e-120
NZ_CP041215.1\|WP_141457017.1\|953027_954545_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|372319	pfam12796, Ank_2, Ankyrin repeats (3 copies).	1.09442e-09
NZ_CP041215.1\|WP_007550037.1\|949157_949496_+\|glutaredoxin-3	gnl\|CDD\|239510	cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including E. coli GRX1 and GRX3, which are members of this subfamily.	5.10589e-38
NZ_CP041215.1\|WP_015589186.1\|951999_952938_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.81856e-147
NZ_CP041215.1\|WP_141457018.1\|959454_960261_-\|DUF2163-domain-containing-protein	gnl\|CDD\|274038	TIGR02218, conserved_hypothetical_protein, phage conserved hypothetical protein BR0599. This model describes a family of proteins found almost exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus gene transfer agent, which packages DNA. An apparent exception is Wolbachia pipientis wMel, a bacterial endosymbiont of the fruit fly, which has several candidate phage-related genes physically separate from obvious prophage regions. [Mobile and extrachromosomal element functions, Prophage functions].	6.38049e-103
NZ_CP041215.1\|WP_015589183.1\|955464_956844_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|235779	PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.	0
NZ_CP041215.1\|WP_010082493.1\|948164_949097_-\|riboflavin-biosynthesis-protein-RibF	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	9.23812e-114
NZ_CP041215.1\|WP_012673206.1\|951413_952013_+\|peroxiredoxin	gnl\|CDD\|239313	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric interface in atypical 2-cys PRX and PRX5) at the opposite end of the monomer to form the stable decameric (pentamer of dimers) structure.	8.00814e-97
NZ_CP041215.1\|WP_141457011.1\|946321_947662_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	5.76615e-70
NZ_CP041215.1\|WP_015589188.1\|945015_946335_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	3.83039e-62
NZ_CP041215.1\|WP_141457353.1\|940310_942869_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|165207	PHA02876, PHA02876, ankyrin repeat protein; Provisional.	5.16609e-37
NZ_CP041215.1\|WP_044471264.1\|958315_958597_+\|transposase	gnl\|CDD\|290455	pfam13737, DDE_Tnp_1_5, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	3.65755e-08
NZ_CP041215.1\|WP_141457020.1\|960697_962677_-\|porin	gnl\|CDD\|173412	PTZ00121, PTZ00121, MAEBL; Provisional.	3.7541e-10
NZ_CP041215.1\|WP_010962821.1\|943201_943732_+\|Na+/H+-antiporter-subunit-E	gnl\|CDD\|237159	PRK12651, PRK12651, Na+/H+ antiporter subunit E.	1.82371e-49
NZ_CP041215.1\|WP_015589182.1\|956836_957946_-\|PQQ-like-beta-propeller-repeat-protein	gnl\|CDD\|379140	pfam13360, PQQ_2, PQQ-like domain. This domain contains several repeats of the PQQ repeat.	4.02229e-39
NZ_CP041215.1\|WP_015589189.1\|944445_945006_+\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|187714	cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART). Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities.	1.28404e-94

>NZ_CP041215.1|WP_141457015.1|949611_950484_+|hypothetical-protein
MTKNISIISRNLISIELVNKQDLENFIKIFTVLDKHIAAKTLFTEELRIEYKQHNGIEVVELLKDTDFTYHEVENVLNHLSKHGMKVPSSVIAHTLFAAYNHALEFKDVAFSFSEGSPQFNIRVSKNTFIITPMSEENLELNSQSSKKLIESLQSEKNIYDCIVEENTIKVIVHSEIHQAINLIIKSLIKSRLLAKEEEGKFKEKLRQLAFKDQAFVEYSSIKTISRYPHNHPLRKHESVTKDIENILCDFIANENSEFAIERLNRLSSAVSPDTPRIITKTIDKLVKFH
>NZ_CP041215.1|WP_007550037.1|949157_949496_+|glutaredoxin-3
MKNVVIYVKKGCPYCIRAKDLLDKKGVKYEEIDVLKNSDLFNDIKSKYNVRTVPQIFINDKHIGGCDKLMDLEKEGKLDDMLNNNDNHTDVTTYTNSNDECGECVIPHDDFM
>NZ_CP041215.1|WP_010082493.1|948164_949097_-|riboflavin-biosynthesis-protein-RibF
MKIIYNCEQGIENNIALTFGNFDGIHLGHEFAISTLKKVAQERGLPSAVLTFEPHPSTVLFGRNNFRLIDQEQKKELISSYGIDYLYIINFNRGFSEVSCDDFISEILIDKYGAKHIIVGENCTFGHKRLGNILTLEKYSEIYGYSLTKLEPLTIDGKICSSSSIREYVQRGEIEIANKLLGRPYQVSGVVTKGACRGREIGFPTINIPIEDCMIKPKFGTYYARVTFPDSNPNWLYGVVNIGMRPTFKDLKKPIIEMHIFDFDEDVYSHKVNIQLLKFIRSEKKFHSIEELTKQINYDILKVYRLKANL
>NZ_CP041215.1|WP_141457013.1|947691_948168_-|signal-peptidase-II
MKKLCLVVILIIVLIDQTSKLYINSLIDEGESIEIASFIKLVEVWNSGISFGMCSALPHGGFFFSAFSILIIGILAYLIYKSDDQSTYLGFSLMIGGAIGNVVDRIYWGAVYDFIYFHIDDWYWPAFNLADLSIVCGMFTLLYKWYIYDMLISKQNGE
>NZ_CP041215.1|WP_141457011.1|946321_947662_-|insulinase-family-protein
MLHKLFSFLILPAFFFTYPISSNALNIEYNIKHAKLDNGLDVYIVPNHRIPAVLHAVIYKVGGMDDPIGKAGLAHYFEHLMFETTGKFTDIEATMSSIGAQFNAFTTKEYTCYFELIPKKDLPLAMEVEADRMGSFNVTQDKIDREKNIVLEERKMRFDNHPNNLLWEEMNSAFYRTGYGRSVIGWESDIKTYNLDDITRFHDNYYHSGNAILLIVGDVELDEVVKLAEEKYGEIKAKPVMRNYPNQDPVHNAGLSVTLESTEVKEPVLYFRYRVPLFEHINEASAAHLAVEILGGGKSSKLYNDLVLDEDVAVSVFAYYNSLAFSDGYIDIQVIPKSGVNLDIVERELDNAINNFMSKGITDEELQSSKYRYKAAQFDNLSDLTHIAMFYVPHLALGIPLDEIDISYSKIDDVNLEDVNNKIRTIFSSNKLIGRLLPKGDNNENK
>NZ_CP041215.1|WP_015589188.1|945015_946335_-|insulinase-family-protein
MRISKFVLLFFFCLSFNLQASGSLNIEEVTTRKGFKFLFVENCALPKVSLNISFKDAGYVYENAEKQGLTWFTSLIIQEGAGKNDAKDFAKKLEDKGISLNFIADLEAFRVSLNTLSDNLEEAISLLSDTIMRPKVDPEGLNRVFEKAKVNFNNLEKSPYFVAGKELDTLLFKKHPYSKSVYGTLDTIMNITRDDVLTYIKRNFAKDNIVISVAGCAKKEEIITLLDKYLSKLPSKRSKVRKIPVKNNFGSAESKNIFMDIPQSVILFAQKGIAYEDPNYYNAGVLIDALGGMRLNSILMTELRQNLGITYGVYASIISNKHGNIISGFISTDSSTAGKAISAVKDTFSRIKKQGIDEQLFKDAKIGLVNNLVLFLSNNTNTATLLDNMQINDRDVNRINNYANIINDVKLEEVNELASSLLEPENLFFVEVGKNAQGQ
>NZ_CP041215.1|WP_015589189.1|944445_945006_+|phosphoribosylglycinamide-formyltransferase
MKKIKLGILISGRGSNMQALIEACQDQNFSAEVACVITNNSEAAGLKIAEQAGISAFIVKDKPLDAGKIHEILVQHKVDLICLAGFMRILKADFLSKWHNKVINIHPSLLPSFKGLNAQEQALKAGVKITGCTVHYVTPEVDAGAIIAQVVVPVLPADDIQSLSERILAKEHKCYVEAVRSIAEDI
>NZ_CP041215.1|WP_006279382.1|943724_944141_-|hypothetical-protein
MSKLPNNAKIGKSQVTQWEVIKNCEYADNCLSKIVTLYVIRITQLSDFYTSDEPEINTVLARISVTSENVFLNKATTIEVMEGIFPYKFNSKKRNNILRLEDLYNYLCSIVNNSLPKEMLESLVREYKDAVNLFKAIT
>NZ_CP041215.1|WP_010962821.1|943201_943732_+|Na+/H+-antiporter-subunit-E
MKNLNFRKEIKFFSLSFIILFVLWTVLSGYFEPFFIFCGVFSSIFTSFIFRRLINAERALSQILNSTSRLSFYKLVSYIPWLMYQIILSSVYVTKKVLQLKSKLEPIIILRKCKGHNDESIALFANSVTITPGTLTINVESKQKTYFSTMYLIDKDLESGISEIENKILKILRSVK
>NZ_CP041215.1|WP_141457353.1|940310_942869_-|ankyrin-repeat-domain-containing-protein
MLHLASYWNYANVAKALIENGADINAEHDNKITPLHIAAHYGHEDVVTILTGKGAIVDAKNGDGWTSLHFAVEKNHKNVVNTLIGKGANVNAENDKGWAPLHLAITNGHKEIVQVLSKAEGINVDAKNSDGWTSLHLAAANGRKDIVETLIEKGADVNAKDHYKWTPLTFASQKGHEVVKGALLKAQENIKALHSAVKHNNEEEVKNLLNKGVNVNAKDDDGCTPLHLAAREGHKDVVDILIKKGAKVNAENDDRCTALHLAAENNHIEVVKILVEKADVNAEGIVDETPLHLAAREGHKDVVDILIKKGAKVNAENDDRCTALHLAAENNHIEVVKILVEKADVNAEGIVDETPLHLAAREGHEDIVKTLIAKGAKVNAENDDRCTALHLAAENNHIEVVKILVEKADVNIKDADRWTPLHVAAREGHKDVVDILIAKGAKVNAENDDRCTALHLAAENNHIEVVKILVEKADVNAEGIVDETPLHLAAREGHKDVVDILIKKGAKVNAENDDRCTALHLAAENNHIEVVKILVEKADVNAEGIVDETPLHLAAREGHKDVVDILIKKGAKVNAENDDRCTALHLAAENNHIEVVKILVEKADVNIKDADRWTPLHVAAENGHEDIVKTLIAKGAKVNAENDDRCTALHLAAKNGHEDVVKTLIAKGAEVNANNGDRRTPLHLAAENGKIKVVEVLLHTEADPSLKDVDGKTPRDLTKYQGIIQLLEEAEKKQTLKNENKKTPKDLTENKDVMQLPEKKEEKQIGKNAIVKEKEQSAKNAIVKGIIVCFVTAVIVGVALAFATALSVPAIIGLAAGSALIVGAGQYIMSKPKTEMKEVKELVPRETEKALT
>NZ_CP041215.1|WP_012673206.1|951413_952013_+|peroxiredoxin
MNLVTKSAIDFTASSVLSDGEIVDDFCLSKRIKNKYAVLFFYPLDFTFVCPTELISLNNRINEFAKRGVEVIGISVDSKFSHYKWRNTPVNDGGIGEISYTLVSDIKKSISRDYGVLYDDSIALRATFVIDDKFIVRHQSINDLPLGRNIDEFVRIVDAIKHNEEHGEVCPAGWKKGKPAMQASDEGVADYLNSYSEEL
>NZ_CP041215.1|WP_015589186.1|951999_952938_+|thioredoxin-disulfide-reductase
MKNYKFSTKVLIIGSGAAGYAAAIYAARANLEPIVVTGMQPGGQLTITTDVENYPGFVSIQGPELMEQMRLHAEKVGAKIIDDEIKSVEQLEDSNEYRFRSSGNINDYYSDAIIIASGAQAKWLGLESEKKFQGYGVSACATCDGAFFRNKVVAVIGGGNTAVEEAIFLTRFAKEVILIHRRDKLRAEKVMQDRLFKNDKIKVMWNHTVEQILGEENPKRVAGIAIKSAETQELKVDGVFIAIGHAPNTGIFKGFVEMDEQGYIITKPGTTLTSRAGVFAAGDVQDKVYRQAVVAAGTGCMAALDAEKFLES
>NZ_CP041215.1|WP_141457017.1|953027_954545_+|ankyrin-repeat-domain-containing-protein
MPYRNGVACYGAYGGGDNTASQARNPTTSRQLSESTKQLFKAIDDGNLEDFKEALAEGADVNAFDKEGMTPLMSIVTNLSAGSETEKEYQNMIRLLLLHRSIDVNISEQNNNNTVLHLAMCFQQKKTLQLLLSHPNINTYLTNKNHQNPEECARQNRAGHLIIEIQKAQKGKELLAALSSGNICQAKRLLNQELHPNCWRRTQDGRIKTPLSLIIRLCLRTITEDEKEVLTKLLKHKDLDFSYEQYAQLKQTIEQAIQSRLTDTINRKDLDDVKKLVEDNCFINRAVVTAALGGVDNPVNSIKDYLNEKFPANTNNIPEDFEKFLQGLERTKAQLVEKEQELTNKTSKISLLERDLGQVRQEKSAQKTKINDLNSEVTRLNRIVYGRASDTVEILQLKRDLKQVREERDRLSSENRLLRSNKNEKSSQAISSGRKLSNYASACFILLGVYTVVACLVIEDYPGIISAFFTAVALAFFLLGCCNLYKANTILSDVESTQLGGLERS
>NZ_CP041215.1|WP_015589184.1|954541_955462_-|tyrosine-recombinase-XerC
MDLGSIIEKWYEWLRCNRSYSPNTLESYMRDLKDLISFLNTHIGGEVNVGTLKNLSIPELRSWLTSRYARGVNARSNTRALSVIRNFFKYIKNNHNIDNEAVFSLSRPIQRRTLPKALSIPNIKTLLKEMKLSDLGEPWVVKREIAIIVLLYGTGLRISEALNLRVSDISSENLIITGKGDKQRQVFILPVVKKCIQEYIKACPYLDEAQHLFLGVRGKKLGRTYVANRLQKIRRMLNLPEILSPHAFRHSFATHLLQEDIDIRSIQQLLGHSSLETTQIYTHLNYQDVFNMYKNFQQGLEKKSKL
>NZ_CP041215.1|WP_015589183.1|955464_956844_-|dihydrolipoyl-dehydrogenase
MTDYDLIVIGGGPGGYKCAIAAAKLGLKVACIDKNSIFGGTCLRVGCIPSKALLHSSYQYAHTKNDLSKLGIKIKDASFDLKEMLGYKDARVQELGKGIEYLFNLHKITKINGLASFDQGNLEVSVEGKVLKTKNIVIATGSDVISLPGINIDEKDIISSTGALSLTEVPKKLVVIGAGAIGLEMSSVWRRLGSEVTVVEFFDRIAAAMDGELSKSLLSSLQKQGIKFLLSTKVEEIKQSSNSLSVKVCSVKDNQTNVIEADKVLVAAGRKPCTENLGIDEKIEKDNRGFVQVNNRYETNVKGIFAIGDVIGGAMLAHKAEEEGVAVAEIIAGQVPHVDYEIIPSVIYTHPAVSSIGKTEEELKSVGRKYKVGKCQFAANGRAKITDDAEGFVKVLTCSRADTILGVHIIGAYADTLINEAAVAMAYGAAAEDIYRICHSHPDINEAFRDACIDAFFKK
>NZ_CP041215.1|WP_015589182.1|956836_957946_-|PQQ-like-beta-propeller-repeat-protein
MKVIIVMIMLLCSSYTMASERISLVDKKLSQGYVAPVLIENSVILSDKHGALYSFDIDNSKAMNWKLHLSHRKKIGNMSLSHYEKNVFFIVDNTLHAIGAKTGKIEWEKELRAPVRGKAAVINNKLVVLTIDNYLYVFDIKDGSFVWTYQNGINEVRGLYSISPAISNDKIIAPFSNGELIAFNEDGKKLWSQKLATNLLDTQLTDVTTTPRVLGDTLIATNNSYIYSIDVKSGNILWSKSLQVKSVSDIESYYSPLIPAEKQKEGGRIFIVTKDDKIIGLDIKNGETVWTSDLIENTQLFAPIMHAHTLWVTSNKGSMFAFPGSESAGKVVKVPGNVFHTPVFTRNKIYVTTEGKGVYSLENRFVFYD
>NZ_CP041215.1|WP_044471264.1|958315_958597_+|transposase
MRVSNCHEYNKFLEKRGNIFRYIDKAIENWYENSPKMQGGNYIYSDKVVILVHIIVNLFRIGLRQTVGFIKGYLQQIGRDLAVISYSQASKKT
>NZ_CP041215.1|WP_022626339.1|958978_959230_+|hypothetical-protein
MAERNAAIRLIKSYSEDGMKRWKRQTNYGKRSYVESFFSRLKQTFGFNFRNKSEINRGKELLLKCYLLNQFTDIGMAKFEMAT
>NZ_CP041215.1|WP_141457018.1|959454_960261_-|DUF2163-domain-containing-protein
MQTTLKNHLAGELLTTATCWKLTLAGGEVMGFTDYDEDLNIDNILYKSSSGFTASSIILNSDLKTDNLEIEGILNSVDIKEKDVLSGKYDFANIEIFLVNYKDLTQGTMNLHSGIFGKVTLSSGRFIVEIRGLSAKLERSIAELYSPACRAQFCDDKCKADTKKFSKISTITKVIDERRFEDTNLTESDEYYKHGVVKFFGSIAFEGVVKEYKNKVVTLFTSPPYQIFAGDKYSILAGCDKTFPTCRSKFNNTVNFRGEPYIPGFYIV
>NZ_CP041215.1|WP_141457020.1|960697_962677_-|porin
MKKSMYTRTTLVSLLTLCSFSSFAADFPDESMKEIKKQESTKTSGKTEVMKTSNKKLKEKMDRICNADPRKKAEELKKKEELRLAAEQKKKEEIRLANEKKAKLIEDSKAKALNAKNSNIEKGKVSKTKRSKTKNAKVEAKDVKKDIKVVNKNTEEKGKASPVVSVGGVDIIDTNQGQSNLRITFGGVVDAQGYGKAGPSGADYKRYNVMPNRSTEYYNATPDITKGANPIFYEGIGNIGDYSNDMGMIADAILHLRAENKNEDLGLLYGADVQFHVPVTEGKGASQGVYAAKGRSAHVFVNSKYGDVKLGYQFGPEALMRLDATRIATVDGAADSDWFRKVNLEGSAASFPFYVTPRLYTESFSSESEKFSFRMAGKYNKGVMTTLPFRVAYYSPNYMGARFGISYSPRYDSGLFTVKETVSEDKGGKIEHKETIKHVGPDYEHIVSAGASYEYDFDKHNIKVKTSAVGEYGFPKQPSKDKHLYKEFVEYNDLMGVNFGVSADYKINEDQGVKFAASFAYLGKSGQPKGIKKLIGDTYTEIDSKDATDGKRVEGLKAQFGKDSIDTMYWTVGAGYQHENIYTSLTYFGSRMNDKDMLHDGALGVQYDLSPACSKNKFVPYAALHYFMTNETGKLKDESDADVPSNQGILLLTGVKFSF

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Crispr_ID: NZ_CP041215_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041215_10

1056920-1057106

Orphan

Consensus_repeat	Method
AGTAATTCGTCATCCCGCTGCTTGTTAGCGGGATCT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP041215_10

>merge|NZ_CP041215|10|1056920-1057106|PILER-CR
TCGTCATCCCGCTGCTTGTTAGCGGCTAAGAGATACCGCGAATGAATCGCGGTATGACGGTGTAGATGATGGTTAAGTAATTCGTCATCCCGCTGCTTGTTAGCGGGATCTCTTGTTAGCGCCGCGGCGGTATGACGGTTCGCGGCGGCATAGTAATTCATCATCCCGCTGCTTGTTAGCGGGATCT

>NZ_CP041215|10|3|1056920-1057106|PILER-CR
TCGTCATCCCGCTGCTTGTTAGCGGCTAAGAGATAC	CGCGAATGAATCGCGGTATGACGGTGTAGATGATGGTTAAGTAATTCGTC
ATCCCGCTGCTTGTTAGCGGGATCTCTTGTTAGCGC	CGCGGCGGTATGACGGTTCGCGGCGGCATAGTAATTCATC
ATCCCGCTGCTTGTTAGCGGGATCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041215.1\|WP_015589164.1\|1060697_1061528_-\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|236996
NZ_CP041215.1\|WP_015589167.1\|1054691_1056266_+\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|274573
NZ_CP041215.1\|WP_041573529.1\|1060034_1060406_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_010962781.1\|1061601_1062030_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372687
NZ_CP041215.1\|WP_141457075.1\|1043884_1045357_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_141457360.1\|1050201_1050414_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_CP041215.1\|WP_041582615.1\|1052472_1052805_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP041215.1\|WP_141457079.1\|1052066_1052438_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP041215.1\|WP_141456652.1\|1064247_1065014_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP041215.1\|WP_141456652.1\|1050535_1051302_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP041215.1\|WP_010962783.1\|1060406_1060691_+\|DUF2610-domain-containing-protein	unknown	unknown	gnl\|CDD\|371344
NZ_CP041215.1\|WP_007301871.1\|1067402_1067903_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_141457087.1\|1062132_1062813_+\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|238244
NZ_CP041215.1\|WP_141457077.1\|1045365_1047456_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_015589166.1\|1058883_1059933_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|224481
NZ_CP041215.1\|WP_012482040.1\|1065611_1067360_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|235927
NZ_CP041215.1\|WP_141457081.1\|1052908_1053568_-\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
NZ_CP041215.1\|WP_141456652.1\|1048683_1049450_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP041215.1\|WP_141457085.1\|1057191_1058643_+\|phage-terminase-large-subunit	unknown	unknown	gnl\|CDD\|227697
NZ_CP041215.1\|WP_015589168.1\|1053897_1054737_+\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213022

Protein	Function_ID	Function_description	E-value
NZ_CP041215.1\|WP_015589164.1\|1060697_1061528_-\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl\|CDD\|236996	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional.	7.06505e-172
NZ_CP041215.1\|WP_015589167.1\|1054691_1056266_+\|penicillin-binding-protein	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	5.38863e-177
NZ_CP041215.1\|WP_010962781.1\|1061601_1062030_+\|hypothetical-protein	gnl\|CDD\|372687	pfam13717, zinc_ribbon_4, zinc-ribbon domain. This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR, pfam12773.	3.55208e-11
NZ_CP041215.1\|WP_141456652.1\|1064247_1065014_+\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	4.72894e-33
NZ_CP041215.1\|WP_141457360.1\|1050201_1050414_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	4.14655e-10
NZ_CP041215.1\|WP_041582615.1\|1052472_1052805_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	4.96856e-12
NZ_CP041215.1\|WP_141457079.1\|1052066_1052438_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.45202e-11
NZ_CP041215.1\|WP_012482040.1\|1065611_1067360_-\|AAA-family-ATPase	gnl\|CDD\|235927	PRK07078, PRK07078, hypothetical protein; Validated.	1.19189e-23
NZ_CP041215.1\|WP_141456652.1\|1050535_1051302_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	4.72894e-33
NZ_CP041215.1\|WP_010962783.1\|1060406_1060691_+\|DUF2610-domain-containing-protein	gnl\|CDD\|371344	pfam11020, DUF2610, Domain of unknown function (DUF2610). This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed. This domain is related to the Ribbon-helix-helix superfamily so may be a DNA-binding protein.	2.84712e-41
NZ_CP041215.1\|WP_141457087.1\|1062132_1062813_+\|ribulose-phosphate-3-epimerase	gnl\|CDD\|238244	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.	4.26364e-111
NZ_CP041215.1\|WP_015589166.1\|1058883_1059933_-\|SAM-dependent-methyltransferase	gnl\|CDD\|224481	COG1565, COG1565, Uncharacterized conserved protein [Function unknown].	5.92883e-89
NZ_CP041215.1\|WP_141457081.1\|1052908_1053568_-\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	2.71798e-43
NZ_CP041215.1\|WP_141456652.1\|1048683_1049450_+\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	4.72894e-33
NZ_CP041215.1\|WP_141457085.1\|1057191_1058643_+\|phage-terminase-large-subunit	gnl\|CDD\|227697	COG5410, COG5410, Uncharacterized protein conserved in bacteria [Function unknown].	1.29456e-59
NZ_CP041215.1\|WP_015589168.1\|1053897_1054737_+\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213022	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes many rhizobial NodB chitooligosaccharide N-deacetylase (EC 3.5.1.-)-like proteins, mainly from bacteria and eukaryotes, such as chitin deacetylases (EC 3.5.1.41), bacterial peptidoglycan N-acetylglucosamine deacetylases (EC 3.5.1.-), and acetylxylan esterases (EC 3.1.1.72), which catalyze the N- or O-deacetylation of substrates such as acetylated chitin, peptidoglycan, and acetylated xylan. All members of this family contain a catalytic NodB homology domain with the same overall topology and a deformed (beta/alpha)8 barrel fold with 6- or 7 strands. Their catalytic activity is dependent on the presence of a divalent cation, preferably cobalt or zinc, and they employ a conserved His-His-Asp zinc-binding triad closely associated with the conserved catalytic base (aspartic acid) and acid (histidine) to carry out acid/base catalysis. Several family members show diversity both in metal ion specificities and in the residues that coordinate the metal.	1.35587e-78

>NZ_CP041215.1|WP_015589167.1|1054691_1056266_+|penicillin-binding-protein
MWTKNKVFNRRAFILGGIQLTISAVFSCRLYNLQIRNRQKYEALSNSNRIRVATIMPKRGKILDRNSIELAVNKISYVVLFDGSGKEVDLQTLSEVESKIAKSSEKITALYKRYYPFGSMCSHVIGYTKRQQGISEVGISGIEYTYDHILKGKSGKSEQEINSKKRVIKELSSIPQQDGQDVQLTIEINLQEKTAEVFKDHQGSAVVIDVNNGEILALYNSPSYDNNLFASRLSNETWENLNAPSLPLVNRALSYQIPPGSIFKVIVALAGLKDGIITPEEKFSCKGYMKIGERKFRCLKSKVHGYVSLNEAMALSCNTYFYNIGKKISVDSLVEMARKFGIGSGPLIGTFKEEAPGLLPDRDWRTRKLYSQWYLGDTINLVIGQGYMLTTPLQLAVLAARIATGKEVIPHIEMSKTIQDFPDIDVDCEHLSIVRKAMFDVVNSKTGTYKKGLSGIQIAGKTGTPEINSKGESHKLFIAYGPYHNPRYAISVFIEHGKAPRQDVAIANEIFQYMLETMSIKLLA
>NZ_CP041215.1|WP_015589168.1|1053897_1054737_+|polysaccharide-deacetylase-family-protein
MFIRIITFFLLYSSTAFCSDCNFNLPYCGLSCNLDLSYRNLSNIKKLLNNDDKFVALTFDDGPSNNRINDIINVLESYEAKATFFVLGERINEKTSEIVKKIHESGHELGNHSWSHRKLTSLSSEEQLQELEKTNTAIKNAIKQDVKWFRPPYGCYDDNLIENTDQLNMYSILWTVDSLDWQGDKPETLVERVLSNVHNGAVILFHDHNNRSNTIEALPHIIKILKKSDYKFVTLSEWEKRVCNTVKARSVTIKEGKKVCFEGMLCGQKTKSLTAEHSY
>NZ_CP041215.1|WP_141457081.1|1052908_1053568_-|DNA-repair-protein-RadC
MNNSERKEKLETRILSSRGRSLLDHELLERTLSECEEGREVAKKLIELFSSLGRVINADLHELKNVTGMNDGAIASIFCLKEIFDRILKGKLKKLSILDNREELLKYFKTAIGQSRKESLRVIYLDRSGHLIYEYIQDCGTIDRVPLYVREIIKQGLLIDASSIAISHNHPSGDTEPSKEDEDNTLTLAATCENVGMKLIDHIIVTQKSHFSFYDSGLL
>NZ_CP041215.1|WP_041582615.1|1052472_1052805_-|helix-turn-helix-transcriptional-regulator
MELGKKIKELRLYCGLTQTELGKKIGVSYRQIQRYENSSNQILASRLYDLAKALSINVADFFTDVHVDSHETYDEEILKLVKGYNEIKSKRLRSVVYILVKSFSQSYNES
>NZ_CP041215.1|WP_141457079.1|1052066_1052438_-|helix-turn-helix-domain-containing-protein
MIVQDEQHPIDKQIGERVRKRRLICGFSQRDLGKKLGISFQHIQGYETGEVRLVIDRLYNLAEALSVDMSYFFTKASEDLHDKAFCSDVGSEEISRLVREYRKIKDETLRDIVHSVIKALANK
>NZ_CP041215.1|WP_141456652.1|1050535_1051302_-|IS5-family-transposase
MYPSDISDKEWEILEPSVAQGAVGRPRKHNIRTIINAIRYIMKGGCQWRMLPKDFPPWKTVYDYFLRWRNSGKLEEIHNMLVKKVRKMVGKNEIPSVGIIDSQSVKTTQKGDPEDMMPGKKIKGRKRHIIVDTIGLIITADVHSAGIQDRDGALNLFTQAKRKAPTLQRFLADQGYIGKLQNYCLLKTGCLLTITKKAADAVGFQVIPKRWIVERTFAWLSNFRRMSKDYEHSPLTSKTNISFNMITIMLAKLAA
>NZ_CP041215.1|WP_141457360.1|1050201_1050414_-|ankyrin-repeat-domain-containing-protein
MDIVKFSLNKGVEVGTKGKNNWTPLHYATNKGYLGIVKLLIEKQQQESFINNSKTTDQSTMLPRKAIYHL
>NZ_CP041215.1|WP_141456652.1|1048683_1049450_+|IS5-family-transposase
MYPSDISDKEWEILEPSVAQGAVGRPRKHNIRTIINAIRYIMKGGCQWRMLPKDFPPWKTVYDYFLRWRNSGKLEEIHNMLVKKVRKMVGKNEIPSVGIIDSQSVKTTQKGDPEDMMPGKKIKGRKRHIIVDTIGLIITADVHSAGIQDRDGALNLFTQAKRKAPTLQRFLADQGYIGKLQNYCLLKTGCLLTITKKAADAVGFQVIPKRWIVERTFAWLSNFRRMSKDYEHSPLTSKTNISFNMITIMLAKLAA
>NZ_CP041215.1|WP_141457077.1|1045365_1047456_+|hypothetical-protein
MHGNNEDRELVRALLSGGCDEFSRQFVGFLNNCPSFLHSANKPGFFPTFFFGMFSTAHDAGILVEDERVYFRFDNYGNLKVAVLTNKENRRIVRCYTVADNENSPGSRFSAEEKQQVEENLPQELQEDEDLDWEEYKIFRFGEECRFIHEIDRFPQRDEPGAPIFHEINPIREQGELLDLMSELANDDTGEVRTNVKRILEYVIDIHDEHEDSLVFRAESDYHGFLCGFLVNFRYRAVADFYPELLIGKGYADVVLLVRGVDQTNDSVPIIIELKVGDEEGLEQAKDYAKSCSVSSLPIHTSSPSAVCVALNFQLRGGAGLRTSVQAFSEGGLSLIPGLLHPHGNGVRGNVKRFLQPIASEFTQSPHCNTFSCTSSFVFGNVLSTRRDLETNDGREVRVTKYLFNHSQGEKMKRTGGRGDAADIVSHALTLALFLSNIGFFVLHIFRRLKWQTLPDKALNLSLLPQATDDAKVRQVLCEVDVQGHLEVASAKKFESLRAYSRSHSEGYFEGRFSEQMGNVRNLHQLADQLMSAEPNFGNDSNVNGEYRARYEVLFNEISRLLSPLLNGNRLLVNNEAKFQALLRGIFQSCDNPAKVIIEFQLQRGRKIDLVLSKSAENDDTHPIGIELKYANTAEQVERKRVEANRQLSEYEFCGGCKRITGGDAMVLLYAILNAVGQEQDLILIGGFRRASGFSR
>NZ_CP041215.1|WP_141457075.1|1043884_1045357_+|hypothetical-protein
MPKSKTKRGREDLKGNAGPSKRSRLSSDPKKNKEIISSKVISKLKDVVKGDRTSAIEEWVKSHPVTVEGLTVEQSDLLCNAFRDESCWSGATLDVAKLVGELAKSGVLNPFAIYKIACIECVESEIKQLFDKALESFRSDLSHKGACEEDRNLACSDKLARVELLSSMGRRDPVFNFWIDQESGNLRENIEAEDGFNKAVDFKWSKGVEHFYNRLCSEEKLVKEEREKLLVSAIAKLSPLQSSYKLASTLNSLLGKVISAKVDHKSLLGLPNKKDRGVIYRPLSYLVEHGFLCTTKYVIQYLSEGCSRSEAEKMLSPRGYAHLLSSLSFVVVSKDYDLDNRNEARSAISSLWESSVFNQNKINVVDPFKDRIAFVAMENAISNLIVDQENSKDTQSAGDGEKVDLVLSILKFAKDCCSDKSFKSLKERIANSLDKTRNSKMIDATSSCNLIEELCKSARNLNLFSASTEGPQSTLVGTNVSISPAAVVNK
>NZ_CP041215.1|WP_141457085.1|1057191_1058643_+|phage-terminase-large-subunit
MNFLKFIELCFQTVVPGCEYNDYQYIKVIADRLEAASAGEVKRIIFNMPPRSMKSMCISVAWPAWILGNQPTARIIVASYSQRLSEKHSLDTRCVMQSSWYRALFPEIELSKDQNTKYKFQTVQRGYRIATSVGGTLTGEGGDFIIVDDPLSSAQALSETLRKRAINWFDQTLVTRLNDRKKGVIVLVMHRLHQEDLTGHLLSKPKNIWHHICLPMISENKQVIYSIKKPMPPVPVIRVAQHCATRRLYNKPASPVRILYSREEGQLLYPLDGGKEEVEIIKAELGSYAFAAQYQQNPLPLSSGIIKPEWLKRYKKFPDNLSHITQSWDTAVSTSDMSNFSVCTTWAKIDNKFYLLDVYRAKLEYPKLKEQVLSLAARWSPHAILIEAKTSGQQLAQELKANSHLPIIEIVPHDGKLARFHRIAPMIESGRIILPHQAVWLNDFEYEILMFPETRHDDQVDSTVQYLQWVRNSTSRVAAIRAL
>NZ_CP041215.1|WP_015589166.1|1058883_1059933_-|SAM-dependent-methyltransferase
MLTYIHELIDKSQGSISISDFMNAVLYHEKYGYYTSKLPLGKDGDFTTAPEISQLFGEVIAVWIMHTWEKLGKPSKFSLVELGPGKGTLIHDIIRVTKKYSSFFNSMLIHLVEISPTLRKIQKEKLKSLDVNWHKNIDNLPEQPTIFLANEFFDALPVDQFVYRDGQWYENMVTKQDDGSLLVSCQCVTLESRKKESWIPVSATQMTNGKFFNGAVVEICSVGVEILKKLEKKIYNNKGAALIVDYGYVYPAYKSTLQSIKQHKYANFLENVGNSDITALVNFQALRDSLKHVDCEILTQREFLYLFGIKERTQALMKSASDEQKNRIFSEFLRLTENMGTLFKAMLLI
>NZ_CP041215.1|WP_041573529.1|1060034_1060406_+|hypothetical-protein
MDDKNTDYVVLIAQDDSIEYKFEEAVNFIENKVINADGLTLAEVFQVLVQMLDGDLALVKKVLAYANIMAKHGMKVAKESQLSRADVRRALEGRESVVNRQDFIKKPPLPPAIKSTKKKSRGL
>NZ_CP041215.1|WP_010962783.1|1060406_1060691_+|DUF2610-domain-containing-protein
MAESIKKFTVQCDFKGQSSPFAIYIGNPKSDAHPIHHQDSWLVKERGGNIPNKVKESLQKLYKLSQENGVSFSELCAYAITVVSNNDKKSDDKE
>NZ_CP041215.1|WP_015589164.1|1060697_1061528_-|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MEGLQLKKTQSEIEDIWKNREKFNDCNLKKTARIAIKEVIELLDSGKIRVAEKLSSGEWVVHKWIKQAILLHFLTEENKIIDNTNCWFDKIGNKFSEWNEEKFRQLKIRAVPGCFVRRSAYIGTNVVLMPSFINVGAYVDSGTMIDTWSTIGSCAQIGKNCHISGGVGIGGVLEPIQASPVIIEDNCFIGARSEVAEGVVVREGSVLGIGVFIGASTKIIDRETSKVFYGEVPPYSVVVPGSIPSKNNISTYCAVIVKKVDEKTRSKISINEILRD
>NZ_CP041215.1|WP_010962781.1|1061601_1062030_+|hypothetical-protein
MKIQCNSCTKTYLVSPKQIGASGRKVKCTNCNHIWHEYLEEVSNKSHSANIQEKKVSGRNFLQNLAFTTLAFATATGLCVVIANGIFPREMNKAYKTISLYKDSISYKLGYKKEQTESPNVKKLAVNKFYQDYLFLSNLRSS
>NZ_CP041215.1|WP_141457087.1|1062132_1062813_+|ribulose-phosphate-3-epimerase
MSIKIAPSILSADFAKLGEEVRKISDLGVDYIHIDVMDGNFVPNITIGPSVVSAIRKYSNLPFDVHLMVKSPGNHIESFINAGADIITVHAEAEIHLERLIRKIKSYKNVNDAKKPIQAGVSIVPSTFPSVLEYIIHELDIVLIMTVNPGFGGQEFIHSQLNKISTIKKMIQERNLKTQISVDGGINFSNAADIIKAGADILVAGSAIFKAEDIKKAVNDLKNPSL
>NZ_CP041215.1|WP_141456652.1|1064247_1065014_+|IS5-family-transposase
MYPSDISDKEWEILEPSVAQGAVGRPRKHNIRTIINAIRYIMKGGCQWRMLPKDFPPWKTVYDYFLRWRNSGKLEEIHNMLVKKVRKMVGKNEIPSVGIIDSQSVKTTQKGDPEDMMPGKKIKGRKRHIIVDTIGLIITADVHSAGIQDRDGALNLFTQAKRKAPTLQRFLADQGYIGKLQNYCLLKTGCLLTITKKAADAVGFQVIPKRWIVERTFAWLSNFRRMSKDYEHSPLTSKTNISFNMITIMLAKLAA
>NZ_CP041215.1|WP_012482040.1|1065611_1067360_-|AAA-family-ATPase
MEFCITESRQEIKMLLAHNIKECLSYLLPGGKFGYGFYSGNINKDHLMVVAEGKQTGTWYNCDKKTNGDIIELWSIITNKTDFSEITSLITKWLSERIIAKYSYLDKNNEAIAYVYLYKNNYRHIWNLRTSRNGLKPLYNIPGIIKSDEVIIVKGENRADSLIKRGFTATTAIDDDIEKTDWSMLTDKHIIIWPEKDEQYVKKVAVELDNLGMSCENPESLGISSENRESLSVLSEKKAFPASHYLNDKSPSPEDIILPRILTPGGLLLLGGAPKVGKTDLLLSWLAHLSAGLPFLSMVPIRPLKIFYLQTDLEYPYIKERLQQLKFDDKSLELISKNLIITPKTSLLLNSQGVEEVKDIIAERLDVKTVDIIAIDTLRGVFDFNQYKGENSNSSMFCFLKDRVEKLRSITNPSCGIILTHNTNKVSKKSLVEEPFQNFSGASALRSFYTSGIMMIKPNGEQNTRQLIFELRNGKSILPMQIEKVNDSWQTVSEKPTVKQRRKKSYDIILRLINERAAKGKFYTKSQFCYLFEDTFGLKSCHSIRRYVNALVASGYIKFYEKEIPERVKVMKVAEHLTRRDI
>NZ_CP041215.1|WP_007301871.1|1067402_1067903_-|hypothetical-protein
MLQDFLTDFNNAKLQSSLIPKGTIVKVKMAIKPGGYENWFTKSYDTGSIYLNAEFTVIEGPYAKCKIYQIIGIKSGKSEGKEDTWGESGRSMIRSILESARNIHTNDTSEKAVLARKINSIADLNGLEFTAKVGIEANNTYGDRNRIATVITPEQEKNSDADWIPF

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Crispr_ID: NZ_CP041215_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041215_11

1128916-1129037

Orphan

Consensus_repeat	Method
GAGATACCGCGAATGAATCGCGGTATGACGGTTCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041215_11

>merge|NZ_CP041215|11|1128916-1129037|CRISPRCasFinder
GAGATACCGCGAATGAATCGCGGTATGACGGTTCGCGACAGCATGACGATAACCTCGTCATCCCGCTACGTGTTAGCGGGATCTAGAGATACCGCGAATGAATCGCGGTATGACGGTTCGCG

>NZ_CP041215|11|8|1128916-1129037|CRISPRCasFinder
GAGATACCGCGAATGAATCGCGGTATGACGGTTCGCG	ACAGCATGACGATAACCTCGTCATCCCGCTACGTGTTAGCGGGATCTA
GAGATACCGCGAATGAATCGCGGTATGACGGTTCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041215.1\|WP_041573518.1\|1118183_1118468_-\|transposase	unknown	unknown	gnl\|CDD\|225511
NZ_CP041215.1\|WP_167482807.1\|1123806_1126893_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|315987
NZ_CP041215.1\|WP_141457147.1\|1131462_1132395_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|372314
NZ_CP041215.1\|WP_141457136.1\|1120191_1120923_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_CP041215.1\|WP_015589054.1\|1135364_1136213_+\|30S-ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|235396
NZ_CP041215.1\|WP_015589064.1\|1119213_1119855_+\|fructose-6-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234947
NZ_CP041215.1\|WP_141457140.1\|1126879_1127056_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|379147
NZ_CP041215.1\|WP_015589052.1\|1137064_1137808_+\|UMP-kinase	unknown	unknown	gnl\|CDD\|234735
NZ_CP041215.1\|WP_070356842.1\|1131156_1131348_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_006280029.1\|1118666_1118852_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_007549203.1\|1137815_1138373_+\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NZ_CP041215.1\|WP_141457364.1\|1132703_1134515_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_CP041215.1\|WP_141457143.1\|1129303_1130182_+\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NZ_CP041215.1\|WP_015589060.1\|1127094_1128267_-\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	unknown	unknown	gnl\|CDD\|235571
NZ_CP041215.1\|WP_095866567.1\|1117820_1118162_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|379098
NZ_CP041215.1\|WP_015589053.1\|1136193_1137054_+\|elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491
NZ_CP041215.1\|WP_041573517.1\|1118832_1119174_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_141457138.1\|1120926_1123587_-\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NZ_CP041215.1\|WP_015589055.1\|1134595_1134967_-\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|235518
NZ_CP041215.1\|WP_141457145.1\|1130172_1131060_+\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|237553

Protein	Function_ID	Function_description	E-value
NZ_CP041215.1\|WP_041573518.1\|1118183_1118468_-\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.97628e-07
NZ_CP041215.1\|WP_167482807.1\|1123806_1126893_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|315987	pfam13424, TPR_12, Tetratricopeptide repeat.	5.02636e-17
NZ_CP041215.1\|WP_141457147.1\|1131462_1132395_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	1.23874e-48
NZ_CP041215.1\|WP_141457136.1\|1120191_1120923_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	7.23033e-28
NZ_CP041215.1\|WP_015589054.1\|1135364_1136213_+\|30S-ribosomal-protein-S2	gnl\|CDD\|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	5.87445e-140
NZ_CP041215.1\|WP_015589064.1\|1119213_1119855_+\|fructose-6-phosphate-aldolase	gnl\|CDD\|234947	PRK01362, PRK01362, fructose-6-phosphate aldolase.	2.16083e-129
NZ_CP041215.1\|WP_141457140.1\|1126879_1127056_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|379147	pfam13374, TPR_10, Tetratricopeptide repeat.	0.00864675
NZ_CP041215.1\|WP_015589052.1\|1137064_1137808_+\|UMP-kinase	gnl\|CDD\|234735	PRK00358, pyrH, uridylate kinase; Provisional.	3.58114e-134
NZ_CP041215.1\|WP_007549203.1\|1137815_1138373_+\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	1.18131e-84
NZ_CP041215.1\|WP_141457364.1\|1132703_1134515_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_CP041215.1\|WP_141457143.1\|1129303_1130182_+\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	2.8372e-145
NZ_CP041215.1\|WP_015589060.1\|1127094_1128267_-\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	0
NZ_CP041215.1\|WP_095866567.1\|1117820_1118162_-\|IS3-family-transposase	gnl\|CDD\|379098	pfam13276, HTH_21, HTH-like domain. This domain contains a predicted helix-turn-helix suggesting a DNA-binding function.	1.333e-13
NZ_CP041215.1\|WP_015589053.1\|1136193_1137054_+\|elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	6.69269e-117
NZ_CP041215.1\|WP_141457138.1\|1120926_1123587_-\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NZ_CP041215.1\|WP_015589055.1\|1134595_1134967_-\|preprotein-translocase-subunit-YajC	gnl\|CDD\|235518	PRK05585, yajC, preprotein translocase subunit YajC; Validated.	6.03719e-34
NZ_CP041215.1\|WP_141457145.1\|1130172_1131060_+\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|237553	PRK13905, murB, UDP-N-acetylmuramate dehydrogenase.	1.03576e-141

>NZ_CP041215.1|WP_015589060.1|1127094_1128267_-|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase
MSKIIEIRAPKTLGGESVTEGIVKIKKGIGEAVKVDDLIFEIETDKTALELTAEASGQITEFLVKEDDVISPDQLLAKLSVGEVKEEARKEDKSESAAKKDAPSARKIMEENAISAESVKGTGMGGRITKADVIGHMNKAEQPAIKQYELPKSVVSGEQREERVKMSKIRQVIAARLKASQNTAAILTTFNEIDMKNVMDLRAKYKDAFEKKYGIKLGFMSFFIKAAVQALKEIAEINAEISGDEIIYKHYYDVGVAVGTDKGLVVPVIRGADQMSFAEIELTLVALGKKAREGKLQVSEMEGATFTISNGGVYGSLLSTPIINPPQSGILGMHSIQNRPVAMGNSIEIRPMMYIALSYDHRIVDGKGAVTFLVKIKNYIEDPNRLVLEV
>NZ_CP041215.1|WP_141457140.1|1126879_1127056_+|tetratricopeptide-repeat-protein
MITSKVVELWEILGPAYGALGNHKKQKELFARASSIFKKHYGPDHPEVAKLLAELDDI
>NZ_CP041215.1|WP_167482807.1|1123806_1126893_+|tetratricopeptide-repeat-protein
MNVENKQSEVLSNRTFKKRDGTSTGDHGRKYEVKLLMLYLLHGLSSKIDFWLASNIEGFGAFDDIFFEYKDQKNKSRIILVQAKHCNTHRSSKNITFEDLFIDGNDRKQQKEDFGLNKYFESHPEIKQNPECKNSDITLVIHTNVNVNLKKGTEKQGSVETLEKYLEESKLTNDNTLNIYEGQKGTCYKIKNHTELKKYFSCGSDDEIEDFLLRIRFVVDQPNHSKLDDIIKKEIGNIYKISGEEDIDTVFVRVYDKVGKWWAQQGSKVSYLTRKDDYFREVIEHLYSLKPREDLFERWNIPPKIASGNFIEREYLNEEIVNHLKTKNEPVILTALYGLGGVGKTQSVLDFIQKHGKEYKAICWFNAKDEDQLLSEYVNLGRKLNIIHDEDNISIAQRAYYVKNWLEDSKREGWLLIYDNVSNYEVISKLRPTKGGKIIVTSRNTEWPQGSIGVDVFTPPESELYVKKILGQVSESDRPNIGILAEKLGRLPLALAQACAYIKENKMTISRYLEIYAERKLYLLSHKTLPKDSNHEPVFITWDITMDAIRNESKLASKLLVACAYLDNDIPKDLLRIFPEIVENNSEEKPFEEVLGILLRYSMLVSNEQSSSVSIHCLVQDVIRLKSKESGKIKKDIKTVFQLLKESFPDDSDKLEDYAKKRQLLPHLEAFLSHIDNWLAKNPSEKQTIEKDYLVYLLIWMNDGYHDLGNPRRQKELLEQALSIFKKYYGPYNFQVAIALANLGIAYGDLGNHRRQKELLKQALPILEKHYGSDHFQVAIILTNLSNAYGGLGNPQKAKELLERALAIQEEHYGPDHSQVAVILTNLGIIYGNLGNYEEKKELLERALAIQEKHYGPDHFEVARTLVSFGTTYRTLGDPQKAKELFEQALAIQEKHYGSDHFQVAITLTNLSNAHGDLGNLQKAKELLERALAIQEKHYEPNHFTVAIILKNLGGTYGDLGDSQKAKELFERALPIFEKHYGPDHLEVAKLLANLSITYGDLGNPQKAKELLEQASFILEKHHVHDYF
>NZ_CP041215.1|WP_141457138.1|1120926_1123587_-|preprotein-translocase-subunit-SecA
MLDSPLILTAILIFFIFTLSFFFIRKIFGSTNKKIIKSFRKIVQQINALETEMQSLSDEELAGKTEEFNRELKNGKTLNDLLVPAFAVVREASRRFLNMRHFDVQLIGGMVLHNGMISEMKTGEGKTLVATLAAYLNSLEGKGVHVVTVNDYLAKRDTEWMSKLYNSLGVSVAFITNNLTDEERKEAYSADIVYSTNNELAFDYLRDNMKFSQEDMVQRGFHYGIVDEVDSILIDEARTPLIISGPVEENNQIYKHINKIVTKLVDSDYEVDEKGRTVFLTEDGISRVEELLRSYNLIPENSSLYDTDSMIMTHYIDQALRAHKLFTADKDYIVKDGKVVIIDEFTGRMMEGRRYSDGLHQALEAKENLEIQHENQTLASVTFQNYFRMYNKLSGMTGTAATEAEEFSDIYRLNVVKIPTNVSVKRVDIDDEIYGTGKEKFNAVLKFIEECHKRLQPVLVGTVSIENSEKLSALLQSHSLKHSVLNARYHEQEAYIIAQAGVPGSVTIATNMAGRGTDIQLGGNAEMIAKVELKKIKNADEREKKYQEIVERVKKDKEIAIKAGGLCVVGTERHESRRIDDQLRGRSGRQGDPGLSKFFLSLEDDLMRIFGSDRMRSFLQKVGLKNNEAIHHPWINKALEKAQKKVEARNYDVRKSLLKFDDVINNQRKVIFKQRNNILGNEINDLLEVYSEVNESVIEGIVQSGYYEDYIEDIVKEFHTRYGITLDKEDLAKFLNKQEVLDYINDKIQEFFTEKEKYFNSQHTTDLWNTIVKQMMIMTLDHLWREHLSVLESLRQSISLRAMGQKDPLNEFKREAFLMFESMLEKWKELTIHRLAHFKLADNQEIGNRLHSARNSRLPKVSRNDKCPCNSGKKYKHCHGAVTVVN
>NZ_CP041215.1|WP_141457136.1|1120191_1120923_+|ankyrin-repeat-domain-containing-protein
MTLRLILQEVNSSPDLSKENLIDRIKDKLQQENQLIYDEWKKNEFDINYTFIVLKCNLLLIAAENGYEKVVRYLTKNGANVNVQDEWEKTSLHYSAQHGHAQVVEVLLEEGADVNAQDKDGRTPLYYAVYYTHGEHPRLNYQHPKVAKLLLNYGADPSFIHRPKAITAGITVGILAAIVAPLALIYATALPALAIVVITVASALIVGGISYGVAYKSSEHSLNSKLSEVSCSNVDGNKQTVQP
>NZ_CP041215.1|WP_015589064.1|1119213_1119855_+|fructose-6-phosphate-aldolase
MEIFLDSVDLNEIKGLKEFIDGITTNPSLIAKSGRKDKYEDLVREICSIIKGPVSVEVVADSHEEMITEGLNLAKIADNVVIKLPLTHEGLISCKKLWTEHKIPVNITLCFSPGQALLAAKVGACFISPFVGRLDDISYDGLSLIEDICTIYSNYGFDTKVLVASVRSPAHVIEAARFGADSITVPAKVLRQLINHPLTDQGLAIFEKDWGVK
>NZ_CP041215.1|WP_041573517.1|1118832_1119174_+|hypothetical-protein
MNLITNSIKGFYSSVKSDLDWQAKRSLIRTLVKEVNIDLDKVDVVFKIKELENPAQNGQNQKMVHCLRGLGTGMTSFFLVQITLMSQYLYSCVIGCLMFTTQEVHTVVSQAVG
>NZ_CP041215.1|WP_006280029.1|1118666_1118852_+|hypothetical-protein
MCILITIVWVPEVFTATKYALTISKEDFKQAIKKMKERLKEIKGEKKKVKGNTAENESYYK
>NZ_CP041215.1|WP_041573518.1|1118183_1118468_-|transposase
MVREYTAEFKLEAVKLANEQRKVGQPVAKVARDLGIRDSVLGKWMKKYNEKKSAANAFPDVAPYDKERFDLQKELAKVTRERDILKKALASQKE
>NZ_CP041215.1|WP_095866567.1|1117820_1118162_-|IS3-family-transposase
MVNTIKCRNYVGFSASGYYKWTTRKISSRESANKELLADIQKIYQASKCRYGAPKIHAELKALGKSCNLKTVQSIMQKNGIQAILRRKFKIKKQQTDSSSQYIRPKLYCRSTK
>NZ_CP041215.1|WP_141457143.1|1129303_1130182_+|hydroxymethylbilane-synthase
MPVKIGTRGSKLAVAQALEAKQKLLDSFPNLSIEIVKIKTSGDKYANANLAEIGGKGLFIKEIETELLENNIDMAVHSLKDMSAFFSGGLTIPCVLERLSSCDAFISHKHNSLESLPQQATIATSSIRRKVQLLNVRPDLNIVPLRGNVTTRLQNQSFDGIILAEAGLIRLEKHHLITEVLPPKVMLSAVGQGAVCIQCRRNDVKIINLLEKINNNMSFIGVKSERSFMKTVNGSCFTPLAALAEYVSENMLHLRCMLASGKNIYFTERTSFIEDAEKMGMDAGLELKSKCL
>NZ_CP041215.1|WP_141457145.1|1130172_1131060_+|UDP-N-acetylmuramate-dehydrogenase
MLISLPKVRGIYRYDVLMSKATWLNVGGRADVLFKPCDIEDLTYLIKNTELPVSVIGATSNIIVRDSGIRGITVKLGKEFAYIKSKGNNSIVAGGAVLLSNLAHFAGNQQISGLEFLVGIPGTVGGGIEMNAGAYGSDIASVVQSIKAVNLEDGNLYEFSSEEMGYFYRGHSLKGNWIFVEAEFKGINSEYELILQRLKEVIERKNKSQPIRGKTAGCIFKNPKNYRAWELIDKSGCLGLNIGGARISKKHCNFLLNYDNATASDLENLGNKVKDAVKDKFNVELEWEIRVLGSY
>NZ_CP041215.1|WP_070356842.1|1131156_1131348_+|hypothetical-protein
MVNLVELCKNLERKIAKLYQFSLLVNQISDIVELFNCGVRKKGNSMAFFPLLSIRLLCSGNWY
>NZ_CP041215.1|WP_141457147.1|1131462_1132395_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MALSKFLDPKLDLTFKRIFGTEKNKNILIHFLNDILGFTEINTIQEVEFLSTIMDPEIASDKQSIVDVLCRDSSGARYVIEMQLTRDKGFEKRAQLYAAKAYSRQADKSGKYIDLKKVFFIAISNCNLFPDKLDYISSHTIRDEKTNEHDLKDFQFVFIELPKFPKNKEEQLESIVDRWLFFFKYADETTEEDLRKIAEKAPIIKLAYDELDRFSWNEKDLVAYEERIMDLRKEEAILEYRLDLATEKGIQIGEERGIKIGKEEGKIEGKIEGKIEVAKAMLANNVDVNTIVKFTGLSISEIEELSVNGY
>NZ_CP041215.1|WP_141457364.1|1132703_1134515_-|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIFGVVSSGDSVIPTLLTGLQKLEYRGYDSSGIAIINNEGKIEVKKSEGKVERLCEVVDDSKMSHSTVGIAHTRWATHGVPGLKNAHPIRTNNVVVAHNGIIENYNLLKKGLEERGMPFHTDTDTEIIPNMLTLYLDEGLSPVDSLFKCLNNLHGSFALVLLFAEYPDALFVAKRNLPLAIGYNCNTVFAASDSNALSAFVEKISHLEDDDIAVIKSSGVSIYNNGTQVKRSIENSSPSDFLISKNGYPSFMLKEIFEQPCALNKTINQFYKQYKEVNKKLFSELNHITIVGCGSSYFAGLIAKYWLENVAQVRVYLEISSEFRYSNVKLEEGSIGLFISQSGETADTIEALRYAKSQKQTIISITNTFSSSIEKISDIVLHTLAGPEIGVASTKTFSAQLATLACFAVELGKIKGILGGERIKQLSSAINSIPEYVEHVLNVMKIQHISGSILEHNNVILIGRGSSYGVAMEGALKIKELSYINTTGIAAGEMKHGSIALIDSTVLVIAIIPYDDLFFKTLSNIQEIIARKGKVIAFSDKQGAPFLRGVCADVVQLPDTDNFISPIIYSVAMQFLAYFTAAKKGLDADCPRNLAKSVTVE
>NZ_CP041215.1|WP_015589055.1|1134595_1134967_-|preprotein-translocase-subunit-YajC
MLISEVFAADATSNTSSIGASFASFTPLILIFVVFYFLIIRPQQKKLKEHRKMIDQIKRGDTVITSGGIIGEVNKVDEANAQFIIEIAPKVEIKVLKSAISEVLSKETQKVAAKPIKKVKSKE
>NZ_CP041215.1|WP_015589054.1|1135364_1136213_+|30S-ribosomal-protein-S2
MTNLPKVTVRDLAESGVHFGHKISRWNAKMAPYIYGVHQENRIHIIDLRKTLPLLQVAMKALYDVAFQGGRILFVGTKFQAFDIIASEAIRCGQYYVNHRWLGGMLTNWGTVSSSIKTLMQYEKILNDEDSILTKKELGNIEKKKQKLDKALGGIREMGAIPDILFIIDTNKEHIAVKEAKKLGIPIVAILDTNSDPDGITYLIPGNDDSRKSIELYCKLATDSILAGIESSLAKSGVKIDDIRGDEFIQEKEDGIVQTKKRRSKVYKEEEREVVTNEDESR
>NZ_CP041215.1|WP_015589053.1|1136193_1137054_+|elongation-factor-Ts
MKMNPDDIRELRDRTGLGLSDCKKALEECDGDIKKAVDKLRTIGLAKADKKSDRVASDGLVVMCLTENYGALVELNCETDFVARNEKFIELVSNLASIAHQERCTSVDELKNAKYESIGTVQEAIMNGTSVLGEKLELSKLCYLEAKDGVIAGYVHGDVCGLGKIGALIALQSSGDKAKLQEIGKQIAMHVVAMKPEALSIDDLDQMKLKNERSIIEEQVRGLNKPEEVAKKIVDGRMAKYYEEVVLLEQKFIKDDKMKVSDFIKSSEVSAIKLSNYKLLVLGGAN
>NZ_CP041215.1|WP_015589052.1|1137064_1137808_+|UMP-kinase
MFPSTNEKSEIKYSRVLFKISGEALMGSQSFGYDMGIISQLCKDIADINRLGVQVCIVVGGGNIFRGTSASLSGCERASSDYIGMLATIINALILQNFLEKNLIASRVLSAIPMATVCEPYIRRKAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRAVEMNCDVILKGTQVNGVYSADPKKNEDAVMYDRLSYTDLLTRDLKVMDASAISLARENSIPIIVFSLKGEKIVNIIKGQGTYTIVSDCKH
>NZ_CP041215.1|WP_007549203.1|1137815_1138373_+|ribosome-recycling-factor
MLNEIKAKTKERMLKTIQSFHDDIKGVRTGRASASLLDGIVVNIYGGHQKLNQVAGVSVIDNKTLSIKIWDINVVGEVKNAILNANLNLNPVVEGNTIRIALPDLTQETREKLVKLLHQFAENARIAIRNIRRDIMEETEKMKENKEISEDDFHGAKKEIQNITDNNIKKIDGELSIKEKDILNH

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Crispr_ID: NZ_CP041215_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041215_12

1132482-1132589

Orphan

Consensus_repeat	Method
GCCGCGAACCGTCATACCGCCGCGGTATCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041215_12

>merge|NZ_CP041215|12|1132482-1132589|CRISPRCasFinder
GCCGCGAACCGTCATACCGCCGCGGTATCTCTAGATCCCGCTAACAAGTAGTGGGATGACGAGCTTATCGTCATCCTGCCGCGAACCGTCATACCGCCGCGGTATCTC

>NZ_CP041215|12|9|1132482-1132589|CRISPRCasFinder
GCCGCGAACCGTCATACCGCCGCGGTATCTC	TAGATCCCGCTAACAAGTAGTGGGATGACGAGCTTATCGTCATCCT
GCCGCGAACCGTCATACCGCCGCGGTATCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041215.1\|WP_167482807.1\|1123806_1126893_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|315987
NZ_CP041215.1\|WP_141457147.1\|1131462_1132395_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|372314
NZ_CP041215.1\|WP_141457136.1\|1120191_1120923_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_CP041215.1\|WP_015589048.1\|1140236_1140743_-\|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234674
NZ_CP041215.1\|WP_015589054.1\|1135364_1136213_+\|30S-ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|235396
NZ_CP041215.1\|WP_015589064.1\|1119213_1119855_+\|fructose-6-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234947
NZ_CP041215.1\|WP_141457140.1\|1126879_1127056_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|379147
NZ_CP041215.1\|WP_015589052.1\|1137064_1137808_+\|UMP-kinase	unknown	unknown	gnl\|CDD\|234735
NZ_CP041215.1\|WP_070356842.1\|1131156_1131348_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_006279326.1\|1139976_1140168_-\|zinc-finger-domain-containing-protein	unknown	unknown	gnl\|CDD\|370944
NZ_CP041215.1\|WP_015589049.1\|1139333_1139960_+\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
NZ_CP041215.1\|WP_007549203.1\|1137815_1138373_+\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NZ_CP041215.1\|WP_015589050.1\|1138648_1139344_+\|di-trans,poly-cis-decaprenylcistransferase	unknown	unknown	gnl\|CDD\|376506
NZ_CP041215.1\|WP_141457364.1\|1132703_1134515_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_CP041215.1\|WP_141457143.1\|1129303_1130182_+\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NZ_CP041215.1\|WP_015589060.1\|1127094_1128267_-\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	unknown	unknown	gnl\|CDD\|235571
NZ_CP041215.1\|WP_015589053.1\|1136193_1137054_+\|elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491
NZ_CP041215.1\|WP_141457138.1\|1120926_1123587_-\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NZ_CP041215.1\|WP_015589055.1\|1134595_1134967_-\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|235518
NZ_CP041215.1\|WP_141457145.1\|1130172_1131060_+\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|237553

Protein	Function_ID	Function_description	E-value
NZ_CP041215.1\|WP_167482807.1\|1123806_1126893_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|315987	pfam13424, TPR_12, Tetratricopeptide repeat.	5.02636e-17
NZ_CP041215.1\|WP_141457147.1\|1131462_1132395_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	1.23874e-48
NZ_CP041215.1\|WP_141457136.1\|1120191_1120923_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	7.23033e-28
NZ_CP041215.1\|WP_015589048.1\|1140236_1140743_-\|pantetheine-phosphate-adenylyltransferase	gnl\|CDD\|234674	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional.	2.96349e-85
NZ_CP041215.1\|WP_015589054.1\|1135364_1136213_+\|30S-ribosomal-protein-S2	gnl\|CDD\|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	5.87445e-140
NZ_CP041215.1\|WP_015589064.1\|1119213_1119855_+\|fructose-6-phosphate-aldolase	gnl\|CDD\|234947	PRK01362, PRK01362, fructose-6-phosphate aldolase.	2.16083e-129
NZ_CP041215.1\|WP_141457140.1\|1126879_1127056_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|379147	pfam13374, TPR_10, Tetratricopeptide repeat.	0.00864675
NZ_CP041215.1\|WP_015589052.1\|1137064_1137808_+\|UMP-kinase	gnl\|CDD\|234735	PRK00358, pyrH, uridylate kinase; Provisional.	3.58114e-134
NZ_CP041215.1\|WP_015589049.1\|1139333_1139960_+\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	6.20677e-39
NZ_CP041215.1\|WP_006279326.1\|1139976_1140168_-\|zinc-finger-domain-containing-protein	gnl\|CDD\|370944	pfam10276, zf-CHCC, Zinc-finger domain. This is a short zinc-finger domain conserved from fungi to humans. It is Cx8Hx14Cx2C.	2.05346e-07
NZ_CP041215.1\|WP_007549203.1\|1137815_1138373_+\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	1.18131e-84
NZ_CP041215.1\|WP_015589050.1\|1138648_1139344_+\|di-trans,poly-cis-decaprenylcistransferase	gnl\|CDD\|376506	pfam01255, Prenyltransf, Putative undecaprenyl diphosphate synthase. Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase.	9.16361e-112
NZ_CP041215.1\|WP_141457364.1\|1132703_1134515_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_CP041215.1\|WP_141457143.1\|1129303_1130182_+\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	2.8372e-145
NZ_CP041215.1\|WP_015589060.1\|1127094_1128267_-\|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	0
NZ_CP041215.1\|WP_015589053.1\|1136193_1137054_+\|elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	6.69269e-117
NZ_CP041215.1\|WP_141457138.1\|1120926_1123587_-\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NZ_CP041215.1\|WP_015589055.1\|1134595_1134967_-\|preprotein-translocase-subunit-YajC	gnl\|CDD\|235518	PRK05585, yajC, preprotein translocase subunit YajC; Validated.	6.03719e-34
NZ_CP041215.1\|WP_141457145.1\|1130172_1131060_+\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|237553	PRK13905, murB, UDP-N-acetylmuramate dehydrogenase.	1.03576e-141

>NZ_CP041215.1|WP_141457147.1|1131462_1132395_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MALSKFLDPKLDLTFKRIFGTEKNKNILIHFLNDILGFTEINTIQEVEFLSTIMDPEIASDKQSIVDVLCRDSSGARYVIEMQLTRDKGFEKRAQLYAAKAYSRQADKSGKYIDLKKVFFIAISNCNLFPDKLDYISSHTIRDEKTNEHDLKDFQFVFIELPKFPKNKEEQLESIVDRWLFFFKYADETTEEDLRKIAEKAPIIKLAYDELDRFSWNEKDLVAYEERIMDLRKEEAILEYRLDLATEKGIQIGEERGIKIGKEEGKIEGKIEGKIEVAKAMLANNVDVNTIVKFTGLSISEIEELSVNGY
>NZ_CP041215.1|WP_070356842.1|1131156_1131348_+|hypothetical-protein
MVNLVELCKNLERKIAKLYQFSLLVNQISDIVELFNCGVRKKGNSMAFFPLLSIRLLCSGNWY
>NZ_CP041215.1|WP_141457145.1|1130172_1131060_+|UDP-N-acetylmuramate-dehydrogenase
MLISLPKVRGIYRYDVLMSKATWLNVGGRADVLFKPCDIEDLTYLIKNTELPVSVIGATSNIIVRDSGIRGITVKLGKEFAYIKSKGNNSIVAGGAVLLSNLAHFAGNQQISGLEFLVGIPGTVGGGIEMNAGAYGSDIASVVQSIKAVNLEDGNLYEFSSEEMGYFYRGHSLKGNWIFVEAEFKGINSEYELILQRLKEVIERKNKSQPIRGKTAGCIFKNPKNYRAWELIDKSGCLGLNIGGARISKKHCNFLLNYDNATASDLENLGNKVKDAVKDKFNVELEWEIRVLGSY
>NZ_CP041215.1|WP_141457143.1|1129303_1130182_+|hydroxymethylbilane-synthase
MPVKIGTRGSKLAVAQALEAKQKLLDSFPNLSIEIVKIKTSGDKYANANLAEIGGKGLFIKEIETELLENNIDMAVHSLKDMSAFFSGGLTIPCVLERLSSCDAFISHKHNSLESLPQQATIATSSIRRKVQLLNVRPDLNIVPLRGNVTTRLQNQSFDGIILAEAGLIRLEKHHLITEVLPPKVMLSAVGQGAVCIQCRRNDVKIINLLEKINNNMSFIGVKSERSFMKTVNGSCFTPLAALAEYVSENMLHLRCMLASGKNIYFTERTSFIEDAEKMGMDAGLELKSKCL
>NZ_CP041215.1|WP_015589060.1|1127094_1128267_-|2-oxoglutarate-dehydrogenase-complex-dihydrolipoyllysine-residue-succinyltransferase
MSKIIEIRAPKTLGGESVTEGIVKIKKGIGEAVKVDDLIFEIETDKTALELTAEASGQITEFLVKEDDVISPDQLLAKLSVGEVKEEARKEDKSESAAKKDAPSARKIMEENAISAESVKGTGMGGRITKADVIGHMNKAEQPAIKQYELPKSVVSGEQREERVKMSKIRQVIAARLKASQNTAAILTTFNEIDMKNVMDLRAKYKDAFEKKYGIKLGFMSFFIKAAVQALKEIAEINAEISGDEIIYKHYYDVGVAVGTDKGLVVPVIRGADQMSFAEIELTLVALGKKAREGKLQVSEMEGATFTISNGGVYGSLLSTPIINPPQSGILGMHSIQNRPVAMGNSIEIRPMMYIALSYDHRIVDGKGAVTFLVKIKNYIEDPNRLVLEV
>NZ_CP041215.1|WP_141457140.1|1126879_1127056_+|tetratricopeptide-repeat-protein
MITSKVVELWEILGPAYGALGNHKKQKELFARASSIFKKHYGPDHPEVAKLLAELDDI
>NZ_CP041215.1|WP_167482807.1|1123806_1126893_+|tetratricopeptide-repeat-protein
MNVENKQSEVLSNRTFKKRDGTSTGDHGRKYEVKLLMLYLLHGLSSKIDFWLASNIEGFGAFDDIFFEYKDQKNKSRIILVQAKHCNTHRSSKNITFEDLFIDGNDRKQQKEDFGLNKYFESHPEIKQNPECKNSDITLVIHTNVNVNLKKGTEKQGSVETLEKYLEESKLTNDNTLNIYEGQKGTCYKIKNHTELKKYFSCGSDDEIEDFLLRIRFVVDQPNHSKLDDIIKKEIGNIYKISGEEDIDTVFVRVYDKVGKWWAQQGSKVSYLTRKDDYFREVIEHLYSLKPREDLFERWNIPPKIASGNFIEREYLNEEIVNHLKTKNEPVILTALYGLGGVGKTQSVLDFIQKHGKEYKAICWFNAKDEDQLLSEYVNLGRKLNIIHDEDNISIAQRAYYVKNWLEDSKREGWLLIYDNVSNYEVISKLRPTKGGKIIVTSRNTEWPQGSIGVDVFTPPESELYVKKILGQVSESDRPNIGILAEKLGRLPLALAQACAYIKENKMTISRYLEIYAERKLYLLSHKTLPKDSNHEPVFITWDITMDAIRNESKLASKLLVACAYLDNDIPKDLLRIFPEIVENNSEEKPFEEVLGILLRYSMLVSNEQSSSVSIHCLVQDVIRLKSKESGKIKKDIKTVFQLLKESFPDDSDKLEDYAKKRQLLPHLEAFLSHIDNWLAKNPSEKQTIEKDYLVYLLIWMNDGYHDLGNPRRQKELLEQALSIFKKYYGPYNFQVAIALANLGIAYGDLGNHRRQKELLKQALPILEKHYGSDHFQVAIILTNLSNAYGGLGNPQKAKELLERALAIQEEHYGPDHSQVAVILTNLGIIYGNLGNYEEKKELLERALAIQEKHYGPDHFEVARTLVSFGTTYRTLGDPQKAKELFEQALAIQEKHYGSDHFQVAITLTNLSNAHGDLGNLQKAKELLERALAIQEKHYEPNHFTVAIILKNLGGTYGDLGDSQKAKELFERALPIFEKHYGPDHLEVAKLLANLSITYGDLGNPQKAKELLEQASFILEKHHVHDYF
>NZ_CP041215.1|WP_141457138.1|1120926_1123587_-|preprotein-translocase-subunit-SecA
MLDSPLILTAILIFFIFTLSFFFIRKIFGSTNKKIIKSFRKIVQQINALETEMQSLSDEELAGKTEEFNRELKNGKTLNDLLVPAFAVVREASRRFLNMRHFDVQLIGGMVLHNGMISEMKTGEGKTLVATLAAYLNSLEGKGVHVVTVNDYLAKRDTEWMSKLYNSLGVSVAFITNNLTDEERKEAYSADIVYSTNNELAFDYLRDNMKFSQEDMVQRGFHYGIVDEVDSILIDEARTPLIISGPVEENNQIYKHINKIVTKLVDSDYEVDEKGRTVFLTEDGISRVEELLRSYNLIPENSSLYDTDSMIMTHYIDQALRAHKLFTADKDYIVKDGKVVIIDEFTGRMMEGRRYSDGLHQALEAKENLEIQHENQTLASVTFQNYFRMYNKLSGMTGTAATEAEEFSDIYRLNVVKIPTNVSVKRVDIDDEIYGTGKEKFNAVLKFIEECHKRLQPVLVGTVSIENSEKLSALLQSHSLKHSVLNARYHEQEAYIIAQAGVPGSVTIATNMAGRGTDIQLGGNAEMIAKVELKKIKNADEREKKYQEIVERVKKDKEIAIKAGGLCVVGTERHESRRIDDQLRGRSGRQGDPGLSKFFLSLEDDLMRIFGSDRMRSFLQKVGLKNNEAIHHPWINKALEKAQKKVEARNYDVRKSLLKFDDVINNQRKVIFKQRNNILGNEINDLLEVYSEVNESVIEGIVQSGYYEDYIEDIVKEFHTRYGITLDKEDLAKFLNKQEVLDYINDKIQEFFTEKEKYFNSQHTTDLWNTIVKQMMIMTLDHLWREHLSVLESLRQSISLRAMGQKDPLNEFKREAFLMFESMLEKWKELTIHRLAHFKLADNQEIGNRLHSARNSRLPKVSRNDKCPCNSGKKYKHCHGAVTVVN
>NZ_CP041215.1|WP_141457136.1|1120191_1120923_+|ankyrin-repeat-domain-containing-protein
MTLRLILQEVNSSPDLSKENLIDRIKDKLQQENQLIYDEWKKNEFDINYTFIVLKCNLLLIAAENGYEKVVRYLTKNGANVNVQDEWEKTSLHYSAQHGHAQVVEVLLEEGADVNAQDKDGRTPLYYAVYYTHGEHPRLNYQHPKVAKLLLNYGADPSFIHRPKAITAGITVGILAAIVAPLALIYATALPALAIVVITVASALIVGGISYGVAYKSSEHSLNSKLSEVSCSNVDGNKQTVQP
>NZ_CP041215.1|WP_015589064.1|1119213_1119855_+|fructose-6-phosphate-aldolase
MEIFLDSVDLNEIKGLKEFIDGITTNPSLIAKSGRKDKYEDLVREICSIIKGPVSVEVVADSHEEMITEGLNLAKIADNVVIKLPLTHEGLISCKKLWTEHKIPVNITLCFSPGQALLAAKVGACFISPFVGRLDDISYDGLSLIEDICTIYSNYGFDTKVLVASVRSPAHVIEAARFGADSITVPAKVLRQLINHPLTDQGLAIFEKDWGVK
>NZ_CP041215.1|WP_141457364.1|1132703_1134515_-|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIFGVVSSGDSVIPTLLTGLQKLEYRGYDSSGIAIINNEGKIEVKKSEGKVERLCEVVDDSKMSHSTVGIAHTRWATHGVPGLKNAHPIRTNNVVVAHNGIIENYNLLKKGLEERGMPFHTDTDTEIIPNMLTLYLDEGLSPVDSLFKCLNNLHGSFALVLLFAEYPDALFVAKRNLPLAIGYNCNTVFAASDSNALSAFVEKISHLEDDDIAVIKSSGVSIYNNGTQVKRSIENSSPSDFLISKNGYPSFMLKEIFEQPCALNKTINQFYKQYKEVNKKLFSELNHITIVGCGSSYFAGLIAKYWLENVAQVRVYLEISSEFRYSNVKLEEGSIGLFISQSGETADTIEALRYAKSQKQTIISITNTFSSSIEKISDIVLHTLAGPEIGVASTKTFSAQLATLACFAVELGKIKGILGGERIKQLSSAINSIPEYVEHVLNVMKIQHISGSILEHNNVILIGRGSSYGVAMEGALKIKELSYINTTGIAAGEMKHGSIALIDSTVLVIAIIPYDDLFFKTLSNIQEIIARKGKVIAFSDKQGAPFLRGVCADVVQLPDTDNFISPIIYSVAMQFLAYFTAAKKGLDADCPRNLAKSVTVE
>NZ_CP041215.1|WP_015589055.1|1134595_1134967_-|preprotein-translocase-subunit-YajC
MLISEVFAADATSNTSSIGASFASFTPLILIFVVFYFLIIRPQQKKLKEHRKMIDQIKRGDTVITSGGIIGEVNKVDEANAQFIIEIAPKVEIKVLKSAISEVLSKETQKVAAKPIKKVKSKE
>NZ_CP041215.1|WP_015589054.1|1135364_1136213_+|30S-ribosomal-protein-S2
MTNLPKVTVRDLAESGVHFGHKISRWNAKMAPYIYGVHQENRIHIIDLRKTLPLLQVAMKALYDVAFQGGRILFVGTKFQAFDIIASEAIRCGQYYVNHRWLGGMLTNWGTVSSSIKTLMQYEKILNDEDSILTKKELGNIEKKKQKLDKALGGIREMGAIPDILFIIDTNKEHIAVKEAKKLGIPIVAILDTNSDPDGITYLIPGNDDSRKSIELYCKLATDSILAGIESSLAKSGVKIDDIRGDEFIQEKEDGIVQTKKRRSKVYKEEEREVVTNEDESR
>NZ_CP041215.1|WP_015589053.1|1136193_1137054_+|elongation-factor-Ts
MKMNPDDIRELRDRTGLGLSDCKKALEECDGDIKKAVDKLRTIGLAKADKKSDRVASDGLVVMCLTENYGALVELNCETDFVARNEKFIELVSNLASIAHQERCTSVDELKNAKYESIGTVQEAIMNGTSVLGEKLELSKLCYLEAKDGVIAGYVHGDVCGLGKIGALIALQSSGDKAKLQEIGKQIAMHVVAMKPEALSIDDLDQMKLKNERSIIEEQVRGLNKPEEVAKKIVDGRMAKYYEEVVLLEQKFIKDDKMKVSDFIKSSEVSAIKLSNYKLLVLGGAN
>NZ_CP041215.1|WP_015589052.1|1137064_1137808_+|UMP-kinase
MFPSTNEKSEIKYSRVLFKISGEALMGSQSFGYDMGIISQLCKDIADINRLGVQVCIVVGGGNIFRGTSASLSGCERASSDYIGMLATIINALILQNFLEKNLIASRVLSAIPMATVCEPYIRRKAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRAVEMNCDVILKGTQVNGVYSADPKKNEDAVMYDRLSYTDLLTRDLKVMDASAISLARENSIPIIVFSLKGEKIVNIIKGQGTYTIVSDCKH
>NZ_CP041215.1|WP_007549203.1|1137815_1138373_+|ribosome-recycling-factor
MLNEIKAKTKERMLKTIQSFHDDIKGVRTGRASASLLDGIVVNIYGGHQKLNQVAGVSVIDNKTLSIKIWDINVVGEVKNAILNANLNLNPVVEGNTIRIALPDLTQETREKLVKLLHQFAENARIAIRNIRRDIMEETEKMKENKEISEDDFHGAKKEIQNITDNNIKKIDGELSIKEKDILNH
>NZ_CP041215.1|WP_015589050.1|1138648_1139344_+|di-trans,poly-cis-decaprenylcistransferase
MLNQESLPKHLAIIMDGNGRWANNQGKVKIDGYKKGSEVAYDIAKYCTDLTIPYLTLYAFSMENWLRPKNETDCLFDLFYSVLTNEDKVNFICNCNIKLNFIGNLSLLSSKILDQIKKAEEMTHKNDGLLLTVAVSYGAKQEITQAISNIIKENIAYVSEEEFEKFLYTKDLPKLDLLIRTGGEKRLSNFLLWQAAYAELYFCDTLWPDFSCQDLSKALEDYTKREKKYGR
>NZ_CP041215.1|WP_015589049.1|1139333_1139960_+|phosphatidate-cytidylyltransferase
MVDNNFIIRMLSSIVILFIFSFATYFSDLSFYLLIFSIAVLSSFEWYNLTQGNKILYVFALLLIALPSASLIYLYNLPQGKYALVWFVLTIWGIDVTAYLFGKNFGGAKICPILSPGKTWTGLLGAILAGVVCTIFGSIFFGLFSIFYSPIIGLAIAILAQLGDFTESLVKRAYGVKDSGNMIPGHGGVLDRMDSFIFTAPLIAIYIS
>NZ_CP041215.1|WP_006279326.1|1139976_1140168_-|zinc-finger-domain-containing-protein
MSKVRVNNRKVCCHGDENDEGSGHPLIYLDMGEEEEIACPYCEKTFVHDCTVEAVGELTRDEL
>NZ_CP041215.1|WP_015589048.1|1140236_1140743_-|pantetheine-phosphate-adenylyltransferase
MNINDKIGIYPGTFDPITFGHIDIIKRACKLVDKLIIGVAENVNKHTAFDTKLRTSMAENEIKGLGIDADVISFNGLLVKFAKEQNASVIIRGLRAVSDFDYEFQMSWVNYKLLPEIETIFLPASEDTQFISSSFVKEIARLGEDVSKFVSKGVQNELINLNRIKNGE

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Crispr_ID: NZ_CP041215_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041215_13

1175891-1175984

Orphan

Consensus_repeat	Method
CGTCATCCCGCTGCTTGTTAGCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041215_13

>merge|NZ_CP041215|13|1175891-1175984|CRISPRCasFinder
CGTCATCCCGCTGCTTGTTAGCTGATGAGATACCGCGGCGGTATGACGGTGTAATGATGGTTAAGTAATTCGTCATCCCGCTGCTTGTTAGCGG

>NZ_CP041215|13|10|1175891-1175984|CRISPRCasFinder
CGTCATCCCGCTGCTTGTTAGCTG	ATGAGATACCGCGGCGGTATGACGGTGTAATGATGGTTAAGTAATT
CGTCATCCCGCTGCTTGTTAGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041215.1\|WP_141457162.1\|1168381_1169971_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133049
NZ_CP041215.1\|WP_015589032.1\|1170929_1173005_-\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	unknown	unknown	gnl\|CDD\|227111
NZ_CP041215.1\|WP_015589036.1\|1167411_1167891_+\|ATP-synthase-subunit-B	unknown	unknown	gnl\|CDD\|184061
NZ_CP041215.1\|WP_141457161.1\|1167899_1168376_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223783
NZ_CP041215.1\|WP_141457171.1\|1177955_1180532_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|222980
NZ_CP041215.1\|WP_015589031.1\|1173077_1173833_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_006014985.1\|1167180_1167408_+\|F0F1-ATP-synthase-subunit-C	unknown	unknown	gnl\|CDD\|181027
NZ_CP041215.1\|WP_015588986.1\|1183205_1184408_-\|Ankyrin-repeat-domain-protein	unknown	unknown	gnl\|CDD\|293786
NZ_CP041215.1\|WP_141457366.1\|1181407_1183213_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NZ_CP041215.1\|WP_141457167.1\|1173982_1175404_+\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_CP041215.1\|WP_015588984.1\|1186366_1187359_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_141457164.1\|1169952_1170981_+\|heme-A-synthase	unknown	unknown	gnl\|CDD\|367131
NZ_CP041215.1\|WP_015588983.1\|1187447_1188623_+\|CCA-tRNA-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|223690
NZ_CP041215.1\|WP_006280514.1\|1190517_1191051_-\|HK97-family-phage-prohead-protease	unknown	unknown	gnl\|CDD\|273682
NZ_CP041215.1\|WP_141457173.1\|1184678_1184924_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_015589037.1\|1166395_1167121_+\|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl\|CDD\|235617
NZ_CP041215.1\|WP_015588985.1\|1185153_1186248_-\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
NZ_CP041215.1\|WP_015589038.1\|1165884_1166166_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_015588988.1\|1180818_1181424_-\|guanylate-kinase	unknown	unknown	gnl\|CDD\|234719
NZ_CP041215.1\|WP_015588990.1\|1176155_1177955_+\|succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|236375

Protein	Function_ID	Function_description	E-value
NZ_CP041215.1\|WP_141457162.1\|1168381_1169971_+\|glycosyltransferase	gnl\|CDD\|133049	cd06427, CESA_like_2, CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the elongation of beta-1,2 polyglucose chains of glucan.	1.36435e-155
NZ_CP041215.1\|WP_015589032.1\|1170929_1173005_-\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
NZ_CP041215.1\|WP_015589036.1\|1167411_1167891_+\|ATP-synthase-subunit-B	gnl\|CDD\|184061	PRK13454, PRK13454, F0F1 ATP synthase subunit B'; Provisional.	7.37093e-14
NZ_CP041215.1\|WP_141457161.1\|1167899_1168376_+\|hypothetical-protein	gnl\|CDD\|223783	COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production and conversion].	1.06445e-07
NZ_CP041215.1\|WP_006014985.1\|1167180_1167408_+\|F0F1-ATP-synthase-subunit-C	gnl\|CDD\|181027	PRK07558, PRK07558, F0F1 ATP synthase subunit C; Validated.	7.57609e-21
NZ_CP041215.1\|WP_015588986.1\|1183205_1184408_-\|Ankyrin-repeat-domain-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	7.76484e-08
NZ_CP041215.1\|WP_141457366.1\|1181407_1183213_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	2.87582e-18
NZ_CP041215.1\|WP_141457167.1\|1173982_1175404_+\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_CP041215.1\|WP_141457164.1\|1169952_1170981_+\|heme-A-synthase	gnl\|CDD\|367131	pfam02628, COX15-CtaA, Cytochrome oxidase assembly protein. This is a family of integral membrane proteins. CtaA is required for cytochrome aa3 oxidase assembly in Bacillus subtilis. COX15 is required for cytochrome c oxidase assembly in yeast.	2.99637e-106
NZ_CP041215.1\|WP_015588983.1\|1187447_1188623_+\|CCA-tRNA-nucleotidyltransferase	gnl\|CDD\|223690	COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis].	7.23205e-72
NZ_CP041215.1\|WP_006280514.1\|1190517_1191051_-\|HK97-family-phage-prohead-protease	gnl\|CDD\|273682	TIGR01543, Putative_prohead_protease, phage prohead protease, HK97 family. This model describes the prohead protease of HK97 and related phage. It is generally encoded next to the gene for the capsid protein that it processes, and in some cases may be fused to it. This family does not show similarity to the prohead protease of phage T4 (see pfam03420). [Mobile and extrachromosomal element functions, Prophage functions, Protein fate, Other].	2.22961e-35
NZ_CP041215.1\|WP_015589037.1\|1166395_1167121_+\|F0F1-ATP-synthase-subunit-A	gnl\|CDD\|235617	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated.	3.07021e-54
NZ_CP041215.1\|WP_015588985.1\|1185153_1186248_-\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
NZ_CP041215.1\|WP_141457171.1\|1177955_1180532_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|222980	PHA03095, PHA03095, ankyrin-like protein; Provisional.	5.97851e-13
NZ_CP041215.1\|WP_015588988.1\|1180818_1181424_-\|guanylate-kinase	gnl\|CDD\|234719	PRK00300, gmk, guanylate kinase; Provisional.	3.45131e-106
NZ_CP041215.1\|WP_015588990.1\|1176155_1177955_+\|succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|236375	PRK09078, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0

>NZ_CP041215.1|WP_141457167.1|1173982_1175404_+|glutamate--tRNA-ligase
MPDVVTRFAPSPTGFLHIGGARTALFNWLYAKHHGGRFLLRIEDTDRKRSTKEAIDVIIEGLRWLGVSYDGEIVYQSKRIERHKEVANLLVEKGRAYHCYCPEDEVAEKKIKAREESKIYKHKCTTKPPSCHPSSRHWKNMWSRAGMTSGVRSVVRFKVPDSQEIVIDDKIYGQIKVNSNQLDDIVILRSDNTPTYIFAVVIDDHDAGITDIIRGSDHLTNTFKHLLIYQALDFDIPRFAHVPLIHGEDGNKLSKRHGATSVCDYEKMGILPKAMRNYLLRLGWSHGNDEIISDEQAIEWFNLESIGRSPARLDFKKLEHLNNHYISNMSNEDILTLMLRENTLTDKKKGYLLQGLTELKKRANYLTELLDLAKFYIQDPPLDLSEEAEQIVKSNLNIIKLLASFLSKIGDENWNKGFLSSQIKECAKLHDMKISDVYHSLRAPITGVMDAPGIIDIMVILGKDECIRRLQAI
>NZ_CP041215.1|WP_015589031.1|1173077_1173833_-|ankyrin-repeat-domain-containing-protein
MDGLVDIAKLLSDNEANINWRYTGPFDKTKQRVQADNLLHLAARIQNKGKFVDICKKNIASVTAHNEYGDNPFHEAARSGILLPAVQEIVNDLETEADNKITKAEEAGDRKEVSRLKEELKCNKKYIKDALCSKDYAFNKKRETPLYYLNAAQQKEIKQIAGIKDSFICNQKFHLCLYIIGAIACIAALCLSLYFLFLVSQSFALSSMVAIASGGVTYLSVKACSEIHALHNESTLVENANVQLAGESLGV
>NZ_CP041215.1|WP_015589032.1|1170929_1173005_-|acetyl-CoA-carboxylase-biotin-carboxylase-subunit
MIEKKYSKILIANRGEIACRIIRTAHKMGISCVCIYSDADVNSVHVRQADESRYIGPSPSCLSYLNIEKICEVAVETGAQAVHPGYGFLAENPDFPRALQKHNIDFIGPSAETIEVTANKITAKEAAKKAGVNVVPGYMGKISDAAHAAQVAEEIGFPVMLKAASGGGGKGMRIVNSKKEIELAFTSATNEAEKSFKDGSIFIEKYIELPRHIEIQIIADKYGNIVCLGERECSIQRNNQKIIEETPSPFISEEVRQKMYVQCVSLAKQVGYFSAGTVEFVVDKDQNFYFLEVNTRLQVEHPVTEFITGIDIVEEMIRTSCGEKLRFNQDDIKLTGSAIESRICAEDPSKKFFPSSGRIKYYDKPGENDYVRIDDGVAAGSEISMFYDSMIAKVITYGKDRVEAISRMQKALSECYIEGVTNNIEFLESIFHHPNFIAAKLHTRFIPDHYPSGFHGDFVTEEYIKIFIFTALYVHLENEERYHHKAVNETSQVSFQCVTLESSKKEGAPVSATRMAGDRARDLFIVNINDNEYSVNAKYQDNILITVYNHNKYSVIGKWKSSYRLLYITINDDTNIALKIERQGSKYFIRHAGMKAECCIFKPHVAELSRLMLNNETEGISADAVKSPISGLLVKLHVNVGDQVEIGQPLFVVEAMKMENIICAEAAMVIKNIPVQEGKNVQIGDVVCFLK
>NZ_CP041215.1|WP_141457164.1|1169952_1170981_+|heme-A-synthase
MEAKPVAIWLFLCCIMVILMVGIGGFTRLTRAGLSITEWKPITGTLPPLSKQDWLQEKLKYEATPEYKALNYGISMEEFRAIYLIEYVHRLVARLTGLVFVLPFIYFTLRRKISKKVVIKLFVALLFGALQAFAGWYMVKSGLVTEPHVSHYRLALHLLLALIIFALLSYQFFDYQIRPQQTKLKVSGNTIYYARMILVLIVIQIIFGAFVAGLNAGLIYNTFPLMDGQVVPEDLFFLQPIWLNIFENRATVQFIHRALALLILTLVVILTVKNASVKPVYIMLLSIIIQIILGVVILLLHIPIAIAIAHQVFSFILFGSSLYFLCYLRKQTTSPICTFFPS
>NZ_CP041215.1|WP_141457162.1|1168381_1169971_+|glycosyltransferase
MPILQADNVEKIKFDSSLCKEQEKLFYYKFNIIPWQKLNDTTFFMVEDTSLDITRWVETHYGIDYVLIKVDSEQILNLLNSHFGISEFASNYLYYKNPNFSAKSIKLSSIFFASFFIVTSILTLTEKCTYFALMLIFIIGCSSYLFKFIATVFSLCEISNQKVDYSKLNEPIYTILLPVFEESAVIGQLIESVKSLDYPKSKLDVKLLVESDDQETLAAIEKYTLPQYFEVIKVPHSLPRTKAKSCNYAMSFARGKYAVIYDADDKPDPLQLKKALIEFNKGDDKLACVQAKLNYYNCDYNFLTKSFSLEYMNWFQYLLPGFQKMNMPMPLGGSSNHFSVKILKKVFFWDAYSVTEDADLGLRLAQMGYKTRMIDSETLEESPIAVFAWIKQRARWIKGYMQTYIVHLKNIKSLYKHTGFKGILLLNLFVGSAAFIFFTTPFLLLSLILTKVLNELFLYYFVVVYVTNLILLVIAVKQQKMPFYFYIVSIFFPVYSLLHSVAAFLALWEFILYPERWNKTKHGLWKQNL
>NZ_CP041215.1|WP_141457161.1|1167899_1168376_+|hypothetical-protein
MSTSLIIGLAFLVIFVLSYKLLKKVIKNALNNKRNKSKFSSEETEKFRKDMLEYYKKSSEKYKKLDAEVNEMMNEALDKANSIIKHNRQQLDQTLDDNAHSNLKKVTDQVEKALGDLQANTASIAADAVKKIMHERKDDKRSSEVISSFSRDLNKKLH
>NZ_CP041215.1|WP_015589036.1|1167411_1167891_+|ATP-synthase-subunit-B
MPQLDVSTFFSQVFWFLIFFSSLFFVVSCLFLPKLDEIISTRSKEVLDSFNSSVHLLRLTEDQVAKYNAALTQARIQAKKIIDDALAQVEEMRANVKNILEEEDKKKSKLIEEKVAEFKSEYTDQLKQMATSIALIYYTKLTNSEIEEEFVADLVSKEF
>NZ_CP041215.1|WP_006014985.1|1167180_1167408_+|F0F1-ATP-synthase-subunit-C
MDLVALKFIAIGLAVFGMLGAGLGIANIFSAMLNGIARNPESEGKMKSYVYIGAAMVEIMGLLAFVLAMLLIFAA
>NZ_CP041215.1|WP_015589037.1|1166395_1167121_+|F0F1-ATP-synthase-subunit-A
MALNPLEQFKVYTIIELPRLFGYDVSFTNSSFFTMISVILMILFLLFGIKKGSVIPGYLQAAVEYVYDFVISIIENNTGSKGLQHIPLIFTVFIFILSCNLVGVLPYSFTVTSHVIVTFALSMVVFIYITIVGFKERGVEFLRILLPKGTPSWLAPIIIIIKLFAYLVRPISLSIRLAANMIAGHTIIKVIAGFIVNMNIFFTPAPFLFIIALIGFEVFVAILQAYIFTILTCVYLSDAVK
>NZ_CP041215.1|WP_015589038.1|1165884_1166166_-|hypothetical-protein
MNEIDFININHLLNLEQEFGNGYIEFVDCFLDEDTRDYYIGLNVLDESHNAIKHFVFDGNIDEDAWDYGSLKFFPEIDLKGDIEKILSLRKKI
>NZ_CP041215.1|WP_015588990.1|1176155_1177955_+|succinate-dehydrogenase-flavoprotein-subunit
MDKSAYEIIEHEYDVVVVGAGGAGLRATLGMAATNFSVACISKIFPTRSHTVAAQGGISAALGNIGEDDWRWHAYDTIKGSDWLGDQDAIEYMCKNAAKAVIELENFGVPFSRTEDGKIYQRSFGGMTTHFGKGKSAQRTCAAADKTGHAILHTLYQQCLKFNAEFFVEYFVIDLIMDSETCCGVLAWSLCDGTLHRFRAHRVVLATGGYGRVYFSATSAHTCTGDGNGMVVRAGLPLEDMEFVQFHPTGIYGSGCLMTEGCRGEGGYLVNSQGEKFMERYAPKAKDLASRDVVSRAITIEIREGRGVGPKKDYMYLTIAHLDPEVIKLRLPGISETARTFAGVDVTKDPIPVIPTVHYNMGGIPTNYYGEVITLKQGKEEVVDGLFAIGEAACVSVHGANRLGSNSLLDLVVFGRAAALRAREKLKSGTPHKKLHSDCTDWIVDRFNKMRFASGGLKVAKIRSEMQNTMQKYASVFRVAEVLEEGKKAIKKVAKMMPDISLEDRSMMWNSDLVEALELANMIPQAVITMECAANREESRGAHAREDFPERDDKNWMKHTIAWLEEKKGQINVKIDYKKVAEKTLSGEIDFIAPEKRVY
>NZ_CP041215.1|WP_141457171.1|1177955_1180532_-|ankyrin-repeat-domain-containing-protein
MGIDITALTTNADKLGECIDKNKKQEQDRKDEQLYGIIKRKVKKEEHKREKPRGQDGTLKKCKRLFEKDASPEVLTKLEESLREQEKYYRYYVQCFLPVLDKAIERSKKISNETKERVKQAISEITYNSKYCNQNDRRDSGIESDYSSDAGDDYEKHSISNPNTANEDQEVEKSNGTTHNNVQLLKAIKNGNNRKLKKYLKDCTDISSIKAEEGKNILHLVASLEKKQKCKFLGTLIKTVTKEDLAQLINSENQTPFQVALINKVTKEKHESNTIRSNDNTLKFLTKLLEHGASSDNLELSTEELQNLKEEQKTYYRNFLEKLAEQGKKSKLKPEIRINTEAKIKEIIPHTINTPDSNDNYLLHPVIKNSDKKLFKELLEKGADISLKDTDGNNALHLIVKPETKQKLKLLNILLETGQKEQFIKAVNDKKEGQTPLHQILQRIQEKSENRSLKKFEKTKRYETLELLLKNGADITVQDKDEKNALHYIASFKGEQKVACLKLTLGKDEFSKAINAVNGKEQTPLHQVLQRIQEKSKEPSLKNKIKNVVKNVVKKEFKDTGRYKTLELFLQNGADITVQDKDGKNALHYIASFKGEQKVTCLELILNSVEKEKFSKAANAANEKERTPLQVALITKTTKDKHNLVNPKSRDNTIKFCVKLLQNGVDPKQLILPERLWSKEYYKTIKGIEKSMGRALIPDDMRTELKCNFGRKLKARDIVKYINNVACKAVTTLVFAALACAAIFSASQGIITIATASSIIAVIGVCYLIYLNLENIYEGFGKIKGKFTEEKQLTLQDNAPKNDTQCNNSVKDIENKSNDLEEQEVQKSSNQSEHTESPPDTKMSAISINSLKNCVGIV
>NZ_CP041215.1|WP_015588988.1|1180818_1181424_-|guanylate-kinase
MTVKSEGVLLVLSSPSGAGKTTISAKLLEQSTNLVRSVSMTTRKPRPGEINGKDYFFVTEEKFHELCKAGQMLEYAKVFENFYGIPRNFIEQNLSNGISVLLSIDWQGAFHLFKLMRKKVVSVFILPPSMEELRLRLQKRNSDDASEIERRLAEAQKEISKRDKYDYVIINDDIDKSVEEISSILNKERLKKLKEKPSLED
>NZ_CP041215.1|WP_141457366.1|1181407_1183213_-|pentapeptide-repeat-containing-protein
MIRFLILILVGHLCYGNETNDEKNQISDFLNALHDVKYVSYSKKDFAEFLVQCHKEGVPEDFKKGFGSNLNGANFNQLYLSKSVFDGVSLIGADFSNTDLSDVSFIDVDLRGANFSNANLHGIKIKGTNLSFTKFVSANLTDIVFDQSNVSYADFISSDLKKVSMHNVIGLHTNFSNVKMNFSNLSNSNVSHVNFSDSEINDTVMQKNNLDNASFFGVDAYKLKIQFSSLKNANIYGAELKESDFRGSNLSDACLNSSIIINSNFDETNLSNTQISYVNDDNSSFVQSILNGSKIKHAYVSETNLQDADLSNIDFSFSELHQVNVSNADIRHGKFHNTKVANSNMNGSFFDHSLFTSAKIEDSDLSTTSMYKIKIQDSQVYNSTLSRHNIDSSEIENSTFFNLLADNSSWSNLKVTNSNFIESDFRSSLLHANAFRKTSFFLSNLSNSTISDMSFLSSSIYKSSVANSHLTGCKFDNSILIDNQGQKKLAGLENAITSIEDLQEKISQGEKFNVNYSYFEFKDMNLENADFSNSTLSRAKFVNVNLNKANFEKTDLRYTVFDNSSLIGTNLSNSNLEGSSFLNSDPKSTMLKNAKKNDRKK
>NZ_CP041215.1|WP_015588986.1|1183205_1184408_-|Ankyrin-repeat-domain-protein
MKNILYFILLVVVFGSLSLFAIEQREEKKIGSVHKNENVGARKQDLLSSTNQKDELKSNVDAKQTQEAESKRLDGTTDKEKLQHNENKASVVEKTISEGEKIDKDLPNDQLEGSTDKFAQNLPNMANKEVNKDLKPEPLPLSADLNENTTDPQKNLQADQKIDIKDNELSKSDASQLLEGKKEKVENQSEEKKVKETNSNSKDRNRVKPITKKDESEKKNLQKWTKLNREPIKEWGHKDIQSKSIYKRQYDSLNEHLPTTVFIDDYSKQFFYCIKKNNLTCLRGVISKLEKIGLTIQEILRFRNKLGDTPLIYSVKQGEVDIVRFLLLQGADLRVVNNNFQSPIDIAIEKKQINIINAIAEMMPHLLEDRKIDNKESSAMYDWAVKTKENNESQCDKQDD
>NZ_CP041215.1|WP_141457173.1|1184678_1184924_+|hypothetical-protein
MQVASFSCHPSAQTTWIQKSLLVSKQTSIESGYNIFDEIIWKTGSQCLGTGMTKEDVIPVPSTDHLLCNLPSKMNVRTAME
>NZ_CP041215.1|WP_015588985.1|1185153_1186248_-|redox-regulated-ATPase-YchF
MSFNCGIVGLPNIGKSTLFNALTESSAAEAANYPFCTIEPNIGKISIKDQRLKQIAAIAGSEKIIYNQLEVVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHLLRCFTDDDISHVHSKIDPISDAEVVEMELILADIDSIEKRLPQLEKKAKQGDKELKRQLELMQEVLATLKLGKPARSLENINEDEMKLLQLLTTKPVMYVCNVEDTNVITGNELSKKVERMAEENKSKFYCISAKLEADIANLDSEEEKQSFLSEFGLQESGLDGVARIMYEVLSMITFFTVGPKEARAWPVKIGSTADKAAGVIHTDFEKGFIKAETISFADYIKYGSESACKDAGKIRFEGRDYIVQDGDIMHFRFNV
>NZ_CP041215.1|WP_015588984.1|1186366_1187359_+|hypothetical-protein
MAEPRKRKLPSDFHDVEVGIKRPKISGQMNVPRKRKLSNDFYDTGSPKRFKSSGQEITLLNSNPYPDNFHVGQAIGNGSCFFDSFRQGLEQQKGIEVTVEQLREDCKEFAQKNPPKWFTNAIVNSHDNNGQHRSETVDDYTANIMRNDRWGDPDVEGRILCQKYDVKLHVIENQTVDNQDLFLHELIDNSGSKSAGEYNKVNYDDSSVLHVINKGHAHFEPLLDRNKSLAKQEQEDFLLAKKLQLDEILEYCNLSKDISERAEVEKRFDELLAENADGKIGDVVGQCVSDIKQRIERSEKQNPSSLPRCSMEESRTEKIFHQQQISQLEV
>NZ_CP041215.1|WP_015588983.1|1187447_1188623_+|CCA-tRNA-nucleotidyltransferase
MQVDQETSLIIDAIEEFGGEARLVGGCVRDSILQRDVHDIDLATNLLPDQVMKALKLRNIKTIPTGLNHGTITAILNQRSFEITTLRHDVKCDGRHAKVEFTNNWQADASRRDFTFNALYADKHGHIYDYFGGIEDLKARRLNFIGNAEDRIKEDYLRILRAFRFHAKICAGDLSDEILSVCKKHSHMIQNLSGERIRDEILKLLECNDPFPTLKSMQESDVLQKIIPKEVKCEILSSSLLFGTDVLVKLALLLRTTKKNDRLSLGEYIIMFLRLSNKQKKKLLFLLSNDIKTELSEKEQKKYISLFGRELYCDLVRICGVESGENVDEYISFANTFNIPKFPLSGDDLIGIGHQPGKSLGRNLELLKQHWEDSSYTLTKEELVLYAKSLF
>NZ_CP041215.1|WP_006280514.1|1190517_1191051_-|HK97-family-phage-prohead-protease
MNKKFLYSPLSIKSIGENGVFSGYASVFNIVDKQNDLILPGAFKENLNRNKIKLLWQHNPDEPIGSIIDIYENDVGLYITAHLLLGIQKAEEVYLMLKTGAINGLSIGYIPIEYDVDHKSGARVLKQVELWEVSLVTFPANLAAQVINVKNQNNEQEVLARAIEKANAVLADMYISA

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Crispr_ID: NZ_CP041215_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041215_14

1265236-1265329

Unclear

Consensus_repeat	Method
CGTCATCCCGCTGCTTGTTAGCTG	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP041215_14

>merge|NZ_CP041215|14|1265236-1265329|CRISPRCasFinder
CGTCATCCCGCTGCTTGTTAGCTGATGAGATACCGCGGCGGTATGACGGTGTAATGATGGTTAAGTAATTCGTCATCCCGCTGCTTGTTAGCGG

>NZ_CP041215|14|11|1265236-1265329|CRISPRCasFinder
CGTCATCCCGCTGCTTGTTAGCTG	ATGAGATACCGCGGCGGTATGACGGTGTAATGATGGTTAAGTAATT
CGTCATCCCGCTGCTTGTTAGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041215.1\|WP_015589220.1\|1262709_1264731_+\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794
NZ_CP041215.1\|WP_015589217.1\|1260155_1260626_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_081600764.1\|1267108_1267744_-\|transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP041215.1\|WP_015589221.1\|1266445_1266781_-\|divalent-cation-tolerance-protein-CutA	unknown	unknown	gnl\|CDD\|376987
NZ_CP041215.1\|WP_007549151.1\|1254810_1255167_+\|holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|237780
NZ_CP041215.1\|WP_141457205.1\|1258610_1259432_-\|DNA-polymerase-III-subunit-delta'	unknown	unknown	gnl\|CDD\|273213
NZ_CP041215.1\|WP_141457209.1\|1261582_1262413_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_141457211.1\|1267727_1268027_-\|transposase	unknown	unknown	gnl\|CDD\|290455
NZ_CP041215.1\|WP_007549783.1\|1265483_1265771_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_006279849.1\|1270686_1271721_+\|FtsH-protease-activity-modulator-HflK	unknown	unknown	gnl\|CDD\|259802
NZ_CP041215.1\|WP_015589213.1\|1257020_1257674_-\|type-IV-secretion-system-protein-VirB8	unknown	unknown	gnl\|CDD\|226259
NZ_CP041215.1\|WP_141457378.1\|1275807_1277640_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_081600785.1\|1274219_1274324_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131744
NZ_CP041215.1\|WP_010962863.1\|1265786_1266362_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_006280293.1\|1260701_1261586_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
NZ_CP041215.1\|WP_141457207.1\|1259449_1260037_-\|threonylcarbamoyl-AMP-synthase	unknown	unknown	gnl\|CDD\|376519
NZ_CP041215.1\|WP_041573531.1\|1255527_1257024_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|235835
NZ_CP041215.1\|WP_015589214.1\|1257742_1258537_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_015589225.1\|1272599_1274093_+\|DegQ-family-serine-endoprotease	unknown	unknown	gnl\|CDD\|273938
NZ_CP041215.1\|WP_015589224.1\|1271723_1272596_+\|protease-modulator-HflC	unknown	unknown	gnl\|CDD\|259803

Protein	Function_ID	Function_description	E-value
NZ_CP041215.1\|WP_015589220.1\|1262709_1264731_+\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_CP041215.1\|WP_007549151.1\|1254810_1255167_+\|holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|237780	PRK14659, acpS, holo-[acyl-carrier-protein] synthase.	1.67744e-70
NZ_CP041215.1\|WP_081600764.1\|1267108_1267744_-\|transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.68022e-12
NZ_CP041215.1\|WP_015589221.1\|1266445_1266781_-\|divalent-cation-tolerance-protein-CutA	gnl\|CDD\|376987	pfam03091, CutA1, CutA1 divalent ion tolerance protein. Several gene loci with a possible involvement in cellular tolerance to copper have been identified. One such locus in eubacteria and archaebacteria, cutA, is thought to be involved in cellular tolerance to a wide variety of divalent cations other than copper. The cutA locus consists of two operons, of one and two genes. The CutA1 protein is a cytoplasmic protein, encoded by the single-gene operon and has been linked to divalent cation tolerance. It has no recognized structural motifs. This family also contains putative proteins from eukaryotes (human and Drosophila).	2.66512e-36
NZ_CP041215.1\|WP_081600785.1\|1274219_1274324_+\|hypothetical-protein	gnl\|CDD\|131744	TIGR02697, hypothetical_protein_WD_0725, Wolbachia palindromic element (WPE) domain. This domain conceptually resembles TIGR01045, the Rickettsial palindromic element (RPE) domain. In both cases, a protein-coding palindromic element spreads through a genome, inserting usually in protein-coding regions. The additional protein coding sequence is thought to allow function of the host protein because of location in surface-exposed regions of the protein structure. Note that this model appears to work better in fragment mode. [Mobile and extrachromosomal element functions, Other].	8.78883e-10
NZ_CP041215.1\|WP_141457211.1\|1267727_1268027_-\|transposase	gnl\|CDD\|290455	pfam13737, DDE_Tnp_1_5, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	3.95549e-10
NZ_CP041215.1\|WP_006279849.1\|1270686_1271721_+\|FtsH-protease-activity-modulator-HflK	gnl\|CDD\|259802	cd03404, SPFH_HflK, High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflK (High frequency of lysogenization K). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another SPFH superfamily member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	8.35893e-132
NZ_CP041215.1\|WP_015589213.1\|1257020_1257674_-\|type-IV-secretion-system-protein-VirB8	gnl\|CDD\|226259	COG3736, VirB8, Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion].	2.36272e-13
NZ_CP041215.1\|WP_006280293.1\|1260701_1261586_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	1.21039e-100
NZ_CP041215.1\|WP_141457207.1\|1259449_1260037_-\|threonylcarbamoyl-AMP-synthase	gnl\|CDD\|376519	pfam01300, Sua5_yciO_yrdC, Telomere recombination. This domain has been shown to bind preferentially to dsRNA. The domain is found in SUA5 as well as HypF and YrdC. It has also been shown to be required for telomere recombniation in yeast.	1.91232e-57
NZ_CP041215.1\|WP_041573531.1\|1255527_1257024_+\|cation:proton-antiporter	gnl\|CDD\|235835	PRK06589, PRK06589, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
NZ_CP041215.1\|WP_141457205.1\|1258610_1259432_-\|DNA-polymerase-III-subunit-delta'	gnl\|CDD\|273213	TIGR00678, DNA_polymerase_III_subunit_delta', DNA polymerase III, delta' subunit. This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair].	9.73489e-35
NZ_CP041215.1\|WP_015589225.1\|1272599_1274093_+\|DegQ-family-serine-endoprotease	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP041215.1\|WP_015589224.1\|1271723_1272596_+\|protease-modulator-HflC	gnl\|CDD\|259803	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflC (High frequency of lysogenization C). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another SPFH superfamily member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	5.11693e-112

>NZ_CP041215.1|WP_015589220.1|1262709_1264731_+|ATP-dependent-DNA-helicase-RecG
MSNQIFLNSRLENIPKFHSAILPKLCGGDKVVDLLFYKPLSYVDRSKLLSDARVGEFTTFIAKVYEHQSPTFRGRPYKIVVESESQYIFIVFFNYSVKYLYKLFPIGANVIISGKLEKFAEHWQITHPDYVSLDINQFKKIACIEPVYQLCRGITNKRIGNIISSNLKELPDLPEWIDDTLIKQKKWLSWRESIIKLHRPSSLVEAEVCRKRLAYDELFAYQLALKLARKNHVKERGREFIILSKYKEQVLNELSFQLTNDQTRAIDEISERQKSKYRMISLLQGDVGSGKTVVALFAMINVVENNMQAALMAPTTILAEQHYNWIEEVLSCTDIKVALLTGKTSRKERKIIMNELASGVLNIVIGTHALFQANVTFKNLGLAVIDEQQRFGVMQRNRLVGKGENADILFVTATPIPRTLQQAMYGDVECSILKEKPKSRLPIKTVTMNISRVPDVIEKLKGAINRGEKAYWICPYIEENEETNIAAAEMRFQELQKTFLDKVGIIHGKLTQEQKDQVMFSFKRNEFSLLVATTVIEVGIDVPDATIMIIENAEQFGLSQLHQLRGRVGRGNKPSFCVLLYDNLSKSSSSKLKIMCESQDGFYIAERDMMLRGSGDILGTKQSGCMEFKFADLYQDKELLNLAYNNAKGAMADFELLLDIFEYRSRLHFSKFQ
>NZ_CP041215.1|WP_141457209.1|1261582_1262413_-|hypothetical-protein
MSSSISEEKENPVVTLRAQAEKFGFSKLRAGKDNAEANSGNTAFLDFQRKDFVINGKSISRDLIAELYKEHDSLLPKSEGKNEDYRPFARKVFKEMFKYAKAEVPSDSILEELVINCNQAGYEAGVHIEFQGALSQHSFIIERPEKVISIDCVSQNNVSVKSDMTLPIFFQRSDGTFGDKVCDLSSSLEFTLKSQDDKNVTYTNGNLSLTVPERLKDYNIGDKSLFDIIKEYFQKLCERLGFFKIKIEHGLGDPLEVSDHLENMEPPIRSNEHGLN
>NZ_CP041215.1|WP_006280293.1|1260701_1261586_+|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MKNNIVIITGITASGKSELCDNLIEKYGNISIINCDSKQVYEEIPIITAQPPKQEVFYKLYGYVSAKENYSVGLWLEDLEKEVNHALENAQIPIITGGSGLYISSLIKGLSSMPQISQKVRKNVSELRKNLSKEEFYKLALSKDPRIQGKVFMNDSHRLSRALEVITETGKSIFVWQENRQPPLFNNFKIYTILPKREDVYRKINSRFITMIENGAIDEVKKLLSMNLAPHLPAMKAHGVPEIIKYLKGEITLDEAIQIAQTNTRHYAKRQYTWFKKQFLNAEVIDCANKLKIF
>NZ_CP041215.1|WP_015589217.1|1260155_1260626_-|hypothetical-protein
MAENNDNNSFTKRFTNRTPGGTGEGFSSKYSSQNTKERALGEKGKISELAGKKTESKEAFSESGGIKSKSRTVNERSFADATKRSRSDLVYLVRGKDRGKSAWHYVLVDKEKREMFLAKSRTGSIDVADYGEILYSGWGEDPPQAIIDKVNEEFGL
>NZ_CP041215.1|WP_141457207.1|1259449_1260037_-|threonylcarbamoyl-AMP-synthase
MVSKIINAIQNNLLVCFPTETVYALACNALDNESIGKIYQIKKRSQNKPLSIFVSDIYNLTKIAKVKERYIDLINHFSPGPITYILPLKNNNILPNEFFKDSIGIRIPEHPIAISILNKLKVPIVATSINISGEKSVCKADDIPQSIKQHLSAVIEDDELVSGIESTIIDLTEDKIKVLREGAILLQTVNNAFSN
>NZ_CP041215.1|WP_141457205.1|1258610_1259432_-|DNA-polymerase-III-subunit-delta'
MKKVIGHNQAKKKLMNNLSVQSWLICGKKGIGKATLAKSFSNWLLIKSYNEVALDLHIVEGDTIGIEKVREMKNFLHLSPIQSEHKIAIIDSLEAMTNNAKNAILKILEEPPKNSKIFIISHKPYDIQTTILCRCFQLNLLPLTYDETKQVVSSQCKFDDQIFDEIITLFPGMPGMIINAISSDAYEAYKCFYKFLHDLKNPNMINKVINSEIELELASYIIQAFILESIKREVNDVEILLSQWKKIDELFVVAKQLHLDKKHVLANVVNIMT
>NZ_CP041215.1|WP_015589214.1|1257742_1258537_-|hypothetical-protein
MTDNKLTVWQSIEVLTKAILNMQKELSSIKNIALDQDVTLEKGKELLSGIYEANFKLNKAINIATLPKIGYHMLNGEFVVRNHITEEEVRIPRDFHYLKVVKSDHDNYKLTFCNFLGNEFFEYKKYDPQYSGVSDEYKFVDFGSVKKTHNLKFKEYVGHAPKFFAAEGPIEPGSQNHVIDLFELVKSGKGRKVGTFADEFGYFDDQNKLHYYNYHKSVESNTYDPENFSVKMINIDVSKIDKFYLIAEQGDIIIHPIWENLDIF
>NZ_CP041215.1|WP_015589213.1|1257020_1257674_-|type-IV-secretion-system-protein-VirB8
MEDKLLESVKNKSYFSKAVEWYCHRYLFCVAERSWMALIVSLLLVCLCLLTLNIYLLFPVKKDLNFVKYMNHTEDEFSAMHKLSFSKKEDEYTSTARYLISKYIEVYESIKTVEPKYQENFIRNNSIHKIHQGFQEKTNNEAVSSKRKITNINVITLSIDRSTKDLVTFAGNATVVFTTEQNKEDTVEISFTLSNIKATLAGIIPFKFIVNGYKYRF
>NZ_CP041215.1|WP_041573531.1|1255527_1257024_+|cation:proton-antiporter
MDYILMYLSLPFSITENYLLITALIPLLSALVIFFTGKWPGVNNSITVTSSVLLFTYTCLCTLYWVYGDHSQFILMDFGNNLHISLKLESTGVIFSLLISFLWVLTSIYAICYMQNNYADSNHSSFLCFFSISISCAMFIAFSGDLLTTFVFYELLTISTYPLVTYNSTNESMIAGRYYFGVLFFSSLVLFFPAIGLLYNEFHTLDFVSGGIFKFDTSLITFIAVCFAMLIYGIGKAALMPMHFWLPKAMVAPTPVSALLHAVAVVKSGVFIIIKVILYTFGIGNMQRFAQQSWFAGGWLPYAAGFTIITASLIALKQKELKKLLAYSTISQLSYIILFASIFSELSMRVAIFQLVCHAFAKITLFFVAGAIITRAGEKYIDKIYGIGRSMPISMTAFAIGALSMIGVPPAPTFWGKFLIFQAVFNSGNVILSVFVTLVLIVSTILNALYFLPIIYNAFFLKPSQNYFIKKTPILLVLPPVITATCTLVIFFSYQVIF
>NZ_CP041215.1|WP_007549151.1|1254810_1255167_+|holo-[acyl-carrier-protein]-synthase
MIHGIGTDIVYIPRVSRILQKYGEKFLNRIYTEKEIELSRKYNSQEMRARYFAKRFAAKEAFVKARGSGQGIIMKDIEIYNDVRGKPYLTVSKDFISKIHLSLSDDGDYATAFVVICV
>NZ_CP041215.1|WP_007549783.1|1265483_1265771_+|hypothetical-protein
MSNNFNFKEFFNHYETNSTSDDIQRYYLLWKSVIAQAMIDAASHCKKTESLVEKRKAISWLSDFSQDFVHTCILADCDPVYVKNKIQPTLKSLTR
>NZ_CP041215.1|WP_010962863.1|1265786_1266362_-|hypothetical-protein
MISLFYKLRLLNYILGSLKDIIVKLFLFTMYLYTFSIVLMFLSNGFWYAVEFCSFKNAFYRLFQYCKWYYENREDLGYGISIRILVAFLTPHFLYKLLLGTGWKSFLKEKIIQILNTRRKKGSEFSNSSKPSGSSYSDKNNYSNNSGNNERQAQDAKRKVNMIKQLLIKDIEATIDRRLNYIFFGKRSKPH
>NZ_CP041215.1|WP_015589221.1|1266445_1266781_-|divalent-cation-tolerance-protein-CutA
MSSLVLIYTTFSNFEEAKTISEELLNEKLIVCVNIFPEVNSLYLWEGKISNSCEVVAIMKSKNDQVDKIVEKIEAMHSYDQPAIAVMPIEKANKSFTNWANSVIDVSSIGV
>NZ_CP041215.1|WP_081600764.1|1267108_1267744_-|transposase
MIAENNMEDIEIAIDSTGISIYNNTPGHSKENSTDRKYRGYEQTRKLHVMLNINNKKAIAVKYSNGVYSDHYGACDLLKEVDFQHAIKALYADRACDRHKFYKLCNEYDIKTKIPPINNAAEHPEIDYMSDRNAAIRLIKLYGEDGMKEWKKEVNYGKRSYIEGFFSRLKQIFGFSFRNKSEINREKELLIKCYLLNKFTDIGMAKFEIVT
>NZ_CP041215.1|WP_141457211.1|1267727_1268027_-|transposase
MNITNFSKKEEAFFCYINDAIENWYENCPKMQGGNYIYSDKVVILVHIIVSFFRIGLRQTVGFIKGYLQQIGRDLAVISYSQASRRFKKLNIKINDCRK
>NZ_CP041215.1|WP_006279849.1|1270686_1271721_+|FtsH-protease-activity-modulator-HflK
MFDDNNPWNLGKKPVGNKTPNNEDILSKAVSDIRFFLNGLTRNRGKKPYFIIFIILLFYACTGFYIVHPSEESIELTFGKYSNTETPGLRYHFPYPIGKVFKVNVKEVNREEIGVSSSYGRDTDRGEGVMLTGDENIVNVNFEVQWRVRDAKDYLFKVRDYKPGFSVKNAAESAMREIIGKNTISFALGQGRPEISRDTRILLQQILDGYQMGIEILSVQMKKIDPPEKVISSFRDVQSARADKERTINEAYAYNNDIIPRAKGEAIKIKLDAQAYENEVINEAKGNANRFLSLYEEYRQNPSLVKNRIYLETMENIFSKVDKVVVTDDLKGMFSYLPLTNLGK
>NZ_CP041215.1|WP_015589224.1|1271723_1272596_+|protease-modulator-HflC
MSSNIKIVFVSVFVVLLIALSNSIFVVQETKQAIVIQLGKVVRDVRESGLYFKLPFINSVEFLDKRVLDLSPDKTPREVITADQKRIIVDAYAKYKITNPITFYQAVRNESGLVRRLYPVIEAHIRENIGRFSLISLLNEKRSEVMQLIQRGVYSEAEKFGIEIIDVRIKRADLPEENSSAIFRRMQTEREKEAKEIRAEGEQAGQEVRSKADKLKREIISSAVKESYEIRGRGYAEATRIYNEAFKVDEEFFNFYRSMSAYSKSFAENNTKFVLSPNNNFLDILNKGWK
>NZ_CP041215.1|WP_015589225.1|1272599_1274093_+|DegQ-family-serine-endoprotease
MKSKAFILSIFAYFLIAFSSYANMFDWNAKKVVDASTTACNCNQGLADLVEELIPAVVNISSEQIIKQENNSRTRVPSMPGNNFFDDFREFFEHFDQFFMDRGPSVNKEVVLLGSGFIIDKGGTIVTNYHVIKNAKDITVTMNDNTYFKAEVLGYDARTDLAVLKINSDKDLSSVAFGDSDKARVGDTVMAIGNPFGLGGSVSTGIISARSRDISIGTMNEFIQTDAAINRGNSGGPLFDLNGKVIGINTAIYSPSESGGNVGIGFAIPSNLAMSIIDTLKSGKKIKHGWLGVQVQPITKEFAESLGLKDIKGALVASIVKDSPAEKGGIKVGDILLEFDGKKIDRMTQLPQMVSRAGPEKKVQVKLLRKSKEVNIKVVIGESTNDGQDNNQEENKSTSDYVTGLTVSNLPKESKESKNNVPTKGVIVTNVDSNSNATLRGIKKGDIIIQLDGTDIENTNDFQKQVDSAVKKNGKDSIMLLIYRNGNQFFASIKLKK
>NZ_CP041215.1|WP_081600785.1|1274219_1274324_+|hypothetical-protein
MPVPRHWKLHCNEHIEQLYNKNWIPVSATCMTPS
>NZ_CP041215.1|WP_141457378.1|1275807_1277640_-|hypothetical-protein
MTSLDFVKELVNAFNVSNYGSKVNTNFVVEGDNIVVKFNCGRRSAKRYLSQMARDLVREYYSDEFVACHVFDLESFPFHFDKKWLKYDKKTRITKLTVPIDSRVIFNLKVHFAEEFENDVEDRVIKKIDEKHHLGKKRIEETLNASIKQAKMDPSSSYIKCLLFNGPNLQTYFVMALQAQMEEHGCSYSDFYHIDGNKVYVKDVENIGFIRNITEASKKEVGYNFYLQHSDNLKVKAKHYKDAIGELIFRLTEISIHRYYYDEFIDKDKISNGDRFAFIPTIKEGNISRYLNRGEANKINAQFGYDLLTDIKGQTETTRSGRFGGVYAFSNRQIALLIPVIIENSVINKDGQIEIDPGLPRTLLAEASPTQEFPKRSCGEGTLTEANIQDQKRSSSIPSFRAWDSSTFLNSEDSLKDTENICNEEPEKQQVTDESDRKSSDEYSEAKSQDSKSPKKHGGGVQKIKKFFFSHFKKQHDVNLKRHDEGRDSVCSISSSVSAPGGSVSKKPPISKRLSLPNRVRAENNSPSKETSPVSSLDGDPGPSQGTISGKGEVLPVEYRSDNSSSKKVDRDSGFCSMGSPDVQHKGSVSSELKHPQQVKHTSEALGKEI

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Crispr_ID: NZ_CP041215_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041215_15

1343847-1343945

Orphan

Consensus_repeat	Method
ACTGGAATGACATCATAGGGGCGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041215_15

>merge|NZ_CP041215|15|1343847-1343945|CRISPRCasFinder
ACTGGGATGACGAGAAAGGAGCACTGGAATGACATCATAGGGGCGCTACCATCATAAAGGAACCAGTGTCAGCTACTTGAATGACATCATAGGGGCGCT

>NZ_CP041215|15|12|1343847-1343945|CRISPRCasFinder
ACTGGGATGACGAGAAAGGAGCACT	GGAATGACATCATAGGGGCGCTACCATCATAAAGGAACCAGTGTCAGCT
ACTTGAATGACATCATAGGGGCGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041215.1\|WP_141457249.1\|1349283_1350564_-\|dihydropteroate-synthase	unknown	unknown	gnl\|CDD\|238380
NZ_CP041215.1\|WP_007548841.1\|1350560_1350947_-\|dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|214902
NZ_CP041215.1\|WP_141456652.1\|1347850_1348617_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP041215.1\|WP_006279944.1\|1343269_1343542_-\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP041215.1\|WP_141456652.1\|1338050_1338817_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP041215.1\|WP_006279168.1\|1351832_1352156_-\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NZ_CP041215.1\|WP_012673282.1\|1344113_1344461_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|178203
NZ_CP041215.1\|WP_141457245.1\|1336623_1337418_+\|NAD-kinase	unknown	unknown	gnl\|CDD\|179876
NZ_CP041215.1\|WP_141457241.1\|1331500_1333012_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NZ_CP041215.1\|WP_141457380.1\|1350986_1351643_-\|CADD-family-putative-folate-metabolism-protein	unknown	unknown	gnl\|CDD\|275114
NZ_CP041215.1\|WP_012673289.1\|1343554_1343815_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235442
NZ_CP041215.1\|WP_015589270.1\|1352272_1352893_-\|3'-5'-exonuclease	unknown	unknown	gnl\|CDD\|176654
NZ_CP041215.1\|WP_015589265.1\|1348807_1349287_-\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|238127
NZ_CP041215.1\|WP_007548602.1\|1336381_1336585_+\|50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|179057
NZ_CP041215.1\|WP_081600790.1\|1337350_1337593_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131744
NZ_CP041215.1\|WP_015589262.1\|1344468_1345509_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041215.1\|WP_141457243.1\|1335272_1336253_-\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|223408
NZ_CP041215.1\|WP_015589257.1\|1333712_1335233_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
NZ_CP041215.1\|WP_015589263.1\|1345492_1345879_+\|cytochrome-c-type-biogenesis-protein-CcmH	unknown	unknown	gnl\|CDD\|377161
NZ_CP041215.1\|WP_141457247.1\|1340981_1343255_-\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995

Protein	Function_ID	Function_description	E-value
NZ_CP041215.1\|WP_141457249.1\|1349283_1350564_-\|dihydropteroate-synthase	gnl\|CDD\|238380	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.	4.94837e-75
NZ_CP041215.1\|WP_007548841.1\|1350560_1350947_-\|dihydroneopterin-aldolase	gnl\|CDD\|214902	smart00905, FolB, Dihydroneopterin aldolase. Dihydroneopterin aldolase catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. In the opportunistic pathogen Pneumocystis carinii, dihydroneopterin aldolase function is expressed as the N-terminal portion of the multifunctional folic acid synthesis protein (Fas). This region encompasses two domains, FasA and FasB, which are 27% amino acid identical. FasA and FasB also share significant amino acid sequence similarity with bacterial dihydroneopterin aldolases. This region consists of two tandem sequences each homologous to folB and which form tetramers.	3.93471e-21
NZ_CP041215.1\|WP_141456652.1\|1347850_1348617_+\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	4.72894e-33
NZ_CP041215.1\|WP_006279944.1\|1343269_1343542_-\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	5.06961e-45
NZ_CP041215.1\|WP_141456652.1\|1338050_1338817_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	4.72894e-33
NZ_CP041215.1\|WP_006279168.1\|1351832_1352156_-\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	2.58124e-37
NZ_CP041215.1\|WP_012673282.1\|1344113_1344461_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	gnl\|CDD\|178203	PLN02593, PLN02593, adrenodoxin-like ferredoxin protein.	2.134e-47
NZ_CP041215.1\|WP_141457245.1\|1336623_1337418_+\|NAD-kinase	gnl\|CDD\|179876	PRK04761, ppnK, inorganic polyphosphate/ATP-NAD kinase; Reviewed.	5.13089e-141
NZ_CP041215.1\|WP_141457241.1\|1331500_1333012_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NZ_CP041215.1\|WP_012673289.1\|1343554_1343815_-\|hypothetical-protein	gnl\|CDD\|235442	PRK05389, truB, tRNA pseudouridine synthase B; Provisional.	5.02312e-08
NZ_CP041215.1\|WP_015589270.1\|1352272_1352893_-\|3'-5'-exonuclease	gnl\|CDD\|176654	cd06142, RNaseD_exo, DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins. Ribonuclease (RNase) D is a bacterial enzyme involved in the maturation of small stable RNAs and the 3' maturation of tRNA. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. In vivo, RNase D only becomes essential upon removal of other ribonucleases. Eukaryotic RNase D homologs include yeast Rrp6p, human PM/Scl-100, and the Drosophila melanogaster egalitarian protein.	1.54314e-64
NZ_CP041215.1\|WP_015589265.1\|1348807_1349287_-\|dihydrofolate-reductase	gnl\|CDD\|238127	cd00209, DHFR, Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5,10-methylenetetrahydrofolate which is then utilized by thymidylate synthase. Inhibition of DHFR interrupts thymidilate synthesis and DNA replication, inhibitors of DHFR (such as Methotrexate) are used in cancer chemotherapy. 5,6,7,8-tetrahydrofolate also is involved in glycine, serine, and threonine metabolism and aminoacyl-tRNA biosynthesis.	8.89757e-45
NZ_CP041215.1\|WP_007548602.1\|1336381_1336585_+\|50S-ribosomal-protein-L31	gnl\|CDD\|179057	PRK00528, rpmE, 50S ribosomal protein L31; Reviewed.	1.51499e-21
NZ_CP041215.1\|WP_081600790.1\|1337350_1337593_-\|hypothetical-protein	gnl\|CDD\|131744	TIGR02697, hypothetical_protein_WD_0725, Wolbachia palindromic element (WPE) domain. This domain conceptually resembles TIGR01045, the Rickettsial palindromic element (RPE) domain. In both cases, a protein-coding palindromic element spreads through a genome, inserting usually in protein-coding regions. The additional protein coding sequence is thought to allow function of the host protein because of location in surface-exposed regions of the protein structure. Note that this model appears to work better in fragment mode. [Mobile and extrachromosomal element functions, Other].	1.15034e-09
NZ_CP041215.1\|WP_141457380.1\|1350986_1351643_-\|CADD-family-putative-folate-metabolism-protein	gnl\|CDD\|275114	TIGR04305, TENA/THI-4_family_protein, putative folate metabolism protein, CADD family. This protein family, related to but outside the family of PqqC proteins involved in PQQ biosynthesis, includes the well-studied Chlamydia protein CADD (Chlamydia protein Associating with Death Domains), which can induce apoptosis in a host cell. Other members of this family occur in Rickettsia and Wolbachia, unrelated in terms of phylogeny (both are alphaproteobacteria) but similar in living intracellularly. Local gene context in these species, although not in Trichodesmium or Nitrosomonas eutropha, suggests a role in folate metabolism, and some species with this protein lack FolE but have other folate synthesis proteins.	2.42842e-132
NZ_CP041215.1\|WP_141457243.1\|1335272_1336253_-\|ACP-S-malonyltransferase	gnl\|CDD\|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	1.5378e-113
NZ_CP041215.1\|WP_015589257.1\|1333712_1335233_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
NZ_CP041215.1\|WP_015589263.1\|1345492_1345879_+\|cytochrome-c-type-biogenesis-protein-CcmH	gnl\|CDD\|377161	pfam03918, CcmH, Cytochrome C biogenesis protein. Members of this family include NrfF, CcmH, CycL, Ccl2.	6.17645e-31
NZ_CP041215.1\|WP_141457247.1\|1340981_1343255_-\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0

>NZ_CP041215.1|WP_012673289.1|1343554_1343815_-|hypothetical-protein
MTEDDGVTGSNTKSFVIPIESALKSMFKVEISLEDAGKIRKGQEVVLNNLRNLKNHDICCTVVGSVPIAICSFIYGCVKPIRVFNI
>NZ_CP041215.1|WP_006279944.1|1343269_1343542_-|30S-ribosomal-protein-S15
MSITSEKKKSLINIYAIKEDDTGSSFVQCAILTERISNLTEHFKVHKHDHHSKRGLLILIGRRRKHLNYIKRKFGNEAYQELIEKLGIRK
>NZ_CP041215.1|WP_141457247.1|1340981_1343255_-|polyribonucleotide-nucleotidyltransferase
MFKIIKKSIEWGGRALSLETGKIARQAHGSVVVNYGDTSVLVTVVRKKKEESVDFLPLNVQFIAKSYAMGKIPGGFFKREGKPSDRETLISRVIDRSIRPLFPEGFHDEISVVCNLLTYDTVNPPEVPALIGAVAALAISGVPFHFTIAGVMVGCDENNNYILNPSVQEMKASSLDLFLSGDENSILMVESEVKELSEENVFNAIKFGHEHLKPVIKLIKEFADTIGNKPESFAPIDASDITQELEKYGKDFEKAYSQTVKQERVQALEAIRENILNTLKETGKDEKLITYAVKNFERSLVREIIRKKSVRIDGRKHDEIRQIEVEVDILSKTHGSALFTRGNTQALVVTALGTTQDEQIVDDIEGDRREHFMLHYNFPSFAVGETSAARAPGRREIGHGKLAWKAIHPVLPDKSEFPYTIRVVSEILESDGSSSMATVCGTSLALMDTGVPIKAPVAGIAMGLIKDKDEYVILSDILGDEDYLGDMDFKVAGTSEGVTALQMDMKISGISFEIVEKSLEQAKAGRLLILEKMNAVISEHSDDVKDHAPRMLSFYIDKDKISAAIGSKGKNIRSVCERSNAKIEIGDDGKVSVFATSGTEAEIAKSMMIDSITELEQGSIVDVKVVRIEKSIVELEFLNGRKGKMHISEVANEHIDSIESVLKQDDTFKALVIDFEKGGCPKLSRRRVDQETGEFFEGELYNEERKDGPNDRDNYYNNSFSRKPGGSHHKRPPRPRSGFSNRNRPKFGNNDSSSGFY
>NZ_CP041215.1|WP_141456652.1|1338050_1338817_-|IS5-family-transposase
MYPSDISDKEWEILEPSVAQGAVGRPRKHNIRTIINAIRYIMKGGCQWRMLPKDFPPWKTVYDYFLRWRNSGKLEEIHNMLVKKVRKMVGKNEIPSVGIIDSQSVKTTQKGDPEDMMPGKKIKGRKRHIIVDTIGLIITADVHSAGIQDRDGALNLFTQAKRKAPTLQRFLADQGYIGKLQNYCLLKTGCLLTITKKAADAVGFQVIPKRWIVERTFAWLSNFRRMSKDYEHSPLTSKTNISFNMITIMLAKLAA
>NZ_CP041215.1|WP_081600790.1|1337350_1337593_-|hypothetical-protein
MGVIPVPRHWDPENLIVYYTTFLIKSWIPVSSTGMTSQGHWNFCFNICTLAMYLNRYIISIEIVYQRFFHSEGNLCQKAK
>NZ_CP041215.1|WP_141457245.1|1336623_1337418_+|NAD-kinase
MHKYKNIGYVASPSPKSQEVSKLLKKLNFINITEENKSEIDLLIVVGGDGFMLRTLHNYVIENKNMHVYGVNTGNVGFLMNKCFSRSEDLIDHIEHATSTQLTLLKMEATDTSGKRYHYIAVNEVYVFRKANQIVEMNITINDKLKVEKFRGDGVILSTPTGSTAYNFSAGGPILPLNSNLLALTSINSYYPRHWNGALISNDTIVQIDINDTKNRPALVVSDYKEFHDISQIKIQKDHENTITLLFDKDYPLNERIFDRQFLY
>NZ_CP041215.1|WP_007548602.1|1336381_1336585_+|50S-ribosomal-protein-L31
MNYHKIIIVMTDGQEFETRSTYGKEGDRVKLDRDPLTHPAWTGSLTSGLASKTSKLAKFNDKYGSIF
>NZ_CP041215.1|WP_141457243.1|1335272_1336253_-|ACP-S-malonyltransferase
MIFAFPGQGSQFVGMGRSLYSEFSVARQVFNEVDSILDGKLSNLIFNGPIEELTITENAQPAIMAVSIAMLRVMEHVFGKSLFTDHNVKYVCGHSVGEYTALCAAGALTLESAIKLLKVRSEAMHEASLKCKGGMVALLGAEINEVEDILKSVQIDGICEIANDNGGGQVVISGTREALEMLPDLFKNSSVRKLIKLQVSGPFHSSLMKPADEKVLEFLKGIKITRPIVPLISNVTAKEESDPKVIKTLLAKQVVSRVKWREMVLYMSSRGINKFVEIGPNKVLSNLVKRIDQSISTKNIDSIGDIDSFFNESLVLTAKNLKVGLS
>NZ_CP041215.1|WP_015589257.1|1333712_1335233_+|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MNIKSVVLCILDGWGNGIENNKYNAISNANPPCWQYISSNYPKCSLSACGTDVGLPGGQIGNSEVGHMNIGSGRVVMQSLQRINQEIGTIENNVNLQSFINDLKSKNGICHLVGLVSDGGVHSHQKHISTLANKISQHGIKVVIHAFLDGRDTLPNSGKKCIQEFIKSIKGNDIRIATVSGRYYAMDRDNRWERTIEAYEAIAFAKAPRHDNAVSLIDENYQNNITDEFVRPAVIGDYQGIKPEDGVLLANFRADRMIQLASILLGKTDYIEVAKLSSILSMMKYKEDLKIPHIFPPTSFADTLGQTIADNKLQQLRIAETEKYAHVTFFFNCGKEEPFSGEERILIPSPKVQTYDLQPEMSAFELTEKLVEKIHSQEFALIVVNYANPDMVGHTGNIKAAEKAVLAVDDCLAKVLSAVKKSSNTALIVTADHGNVECMFDEENNTPHTAHTLNKVPFIVSCDNLKLRDGRLSDIAPTILQLLGIKKPNEMTGSSLISCITLCHSS
>NZ_CP041215.1|WP_141457241.1|1331500_1333012_+|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MKIKRALISVYDKTNIIDLASFLMQQQIEILSTGNTYKALSDAGIKTQEVSDYTQFPEILGGRVKTLHPKIHGGILYDREKHKKEVQDLEIEPIDLLITNLYPFWETVSSSSNEEQIIEQIDIGGVALIRAAAKNFRFTSVISSIQDYEALKAEMIENNNKTTLEYRKHLATKAFALTAHYDSNIHSWFLSQSKNNELPEFFALYGHKVQELRYGENPHQKAAFYSNQFTEYPLEKLHGKELSYNNIVDIESALNITSEFEEPAAVIIKHNNPCGAAIGNNALEAYEKALSCDEVSSFGGIVALNREIDLKLAEKLNEIFLEVVIAPSVNNEALKILQRKKNLRVIIHKSFQQNVKYQTKNVVGGFLVQENNDHTIKAEQVTECTATDKEKKDLIFAWKICKHVKSNAIVIAKDGCAIGIGAGQTSRIDSVNIAVKKAGEKCKGAVLASDAFFPFPDSIVESTKHGITAIIQPSGSLKDQDVIKAANENKIAMFFTGVRSFFH
>NZ_CP041215.1|WP_012673282.1|1344113_1344461_+|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein
MPSVTFILPDGSKKSYEAAEGETLLNLAHRSDPDLLEGACEGSLACSTCHVIVDPKFYNAVEIHNPISDEENDMLDLAFGLTETSRLGCQIKITKDIDGLCVTIPRGTRNISLDK
>NZ_CP041215.1|WP_015589262.1|1344468_1345509_+|hypothetical-protein
MRKIFIYIIISLLLFIPVAYSGFWYFSACKVKNLLAETILYINDEKFDISHDFSGFPSNLIFRVTNPKFSNEQLTISSDALLIKNRLFDKSVYIYIPSNEVNIAVHDDEKKNIKCHTNDSSHFVVRLNDLPSSLRFNKNSTVIDYIDTLRYEDYGLKCDVLENQQSVITEVNDKSNYIQFHLDKEPSGNTKLGFDFYTYRYKNTASPESYLSIDTKFDYEFVNHISASRINFNIEKFLIQSNNFSLAADGGVRNYNLVTSSFKDKINVAISNYKELISFMIGDSKTSDAFEKLMSSLSEKTTDDGIQFSIKYDDDVGSSFIGKLSTTDFMNQLSKITQLTKDESSS
>NZ_CP041215.1|WP_015589263.1|1345492_1345879_+|cytochrome-c-type-biogenesis-protein-CcmH
MRAVVSLLFILIFHSGVNAFTLDNKLRDKSMEKRATSLFEIIRCPICSGESLSESGSQIAYDMREAIRKKINDGYTDEEIISELKNSYGNSIIIVPPIKSSTYILWFIPLTTLLIGCFLIQRYINTTT
>NZ_CP041215.1|WP_141456652.1|1347850_1348617_+|IS5-family-transposase
MYPSDISDKEWEILEPSVAQGAVGRPRKHNIRTIINAIRYIMKGGCQWRMLPKDFPPWKTVYDYFLRWRNSGKLEEIHNMLVKKVRKMVGKNEIPSVGIIDSQSVKTTQKGDPEDMMPGKKIKGRKRHIIVDTIGLIITADVHSAGIQDRDGALNLFTQAKRKAPTLQRFLADQGYIGKLQNYCLLKTGCLLTITKKAADAVGFQVIPKRWIVERTFAWLSNFRRMSKDYEHSPLTSKTNISFNMITIMLAKLAA
>NZ_CP041215.1|WP_015589265.1|1348807_1349287_-|dihydrofolate-reductase
MIVIGIMAVDPKGVIGINNGLPWHYPSELDHFRQVTDKQVIVMGRKTFETMSQNILKDRIPVVFSRDKLNSCFNRGVKCTIISSMQEFLSIQSNSKVFMIGGAQIAHLFLEYDLISEFIITEIHKPYKGDVYFNLTLLDGWHKTILTKTKDYTICRLIR
>NZ_CP041215.1|WP_141457249.1|1349283_1350564_-|dihydropteroate-synthase
MIYISIGSNMGNRFSHLQKAAQLLQERYFKNLKSSIILETKAILPNDAPPGWDRPFLNMVVYGSCSSSPEELLKGLKQIECDIGRPQVYEKWAPRVIDLDILLWDNLTLDTSYLKIPHPELINRPFLLHLMAMLSPMAVVNKTFGTINPNIKDCFLRSFTLSPELVGIVNITPDSFSDGGLYYDADQATKQALQLVSDGASIVDLGAQSTRPGSSIQTPKAEYARLKPVLDNLNQYMKVGDIKVSIDSFWPDVILNVLEHYNIAWINNQKGDLDDNTLKAVASNGCSIVIMHSLSIPPHRDNIIPDDTDPIDIINNWAEKSISRLLTLGFDQSSIIIDPGIGFGKSLYQNIWLLCNIEALQSFGCKVLVGHSRKSFISSFSTEPVFNRDLETIALSSALHNKVDFLRVHNVRDHMRFFVAQAALQG
>NZ_CP041215.1|WP_007548841.1|1350560_1350947_-|dihydroneopterin-aldolase
MSACNLLISDLRLWVHLGYSAEEKYHSQLVSVNIDFTFKSPPLGLTTDRLEDTICYLEVVQSIQSLVQSKQFNLIEHLTHDIYRTINNLVMQKKLIISSIGVTIHKVAPPVPSVHGGVFFTYRNALQE
>NZ_CP041215.1|WP_141457380.1|1350986_1351643_-|CADD-family-putative-folate-metabolism-protein
MKFTKSLNNKLDELHLLNHPFYQSWNTGSLSLQALQTYAKEYYHHVAAFPRYISGIHFLCPDLKMRQVLLGNLIEEEQGDENHPELWQRFAEGLGVARSDLRESAQIKETQELVDGYFDIVRSGFAAGLGALYAYERQTPEVSKSKIEGLKKHYSISDECSLQFFTVHMEADEWHSEECANLIEDLDEKEQDKVMQGAQKGAKLLWGFLDGMINASVC
>NZ_CP041215.1|WP_006279168.1|1351832_1352156_-|thioredoxin
MSDDITSVNDQNFKSEVTDYKGFVLIDFWAEWCGPCKSLMPRIEQLAKDRKGKIKICKFDIDEGTEVPSKYGVQSIPTLIIFQDGKEIARKIGATNDLSSWVDSEIS
>NZ_CP041215.1|WP_015589270.1|1352272_1352893_-|3'-5'-exonuclease
MGIFLYKDDLPASSIPDDVRSIAVDTEAMGLLHSRDRLCLVQLSFNDGNAHLVQLKNDYTAPNLRKILEDKNITKIFHFARFDVSIIRYYLETWALPCYCTKIASRLVRTYTDNHSLKELCLELLDTKLNKQQQSSDWGNENLTDKQKSYAASDVLYLHRIKEKLDLMLERENRKELAQKCFEFLPTRIELDLMGWENVDIFNHQM

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Crispr_ID: NZ_CP041215_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041215_16

1404715-1404823

Orphan

Consensus_repeat	Method
AGATCCCGCTAACAAGCAGCGGGATGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041215_16

>merge|NZ_CP041215|16|1404715-1404823|CRISPRCasFinder
AGATCCCGCTAACAAGCAGCGGGATGACGAGCTTATCGTCACGCCGCCACGAACCGTCATACCGCCGCGGCGCTAACAAGAGATCCCGCTAACAAGCAGCGGGATGACG

>NZ_CP041215|16|13|1404715-1404823|CRISPRCasFinder
AGATCCCGCTAACAAGCAGCGGGATGACG	AGCTTATCGTCACGCCGCCACGAACCGTCATACCGCCGCGGCGCTAACAAG
AGATCCCGCTAACAAGCAGCGGGATGACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041215.1\|WP_070357063.1\|1408318_1409812_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|225567
NZ_CP041215.1\|WP_015589374.1\|1393713_1396050_+\|outer-membrane-protein-assembly-factor-BamA	unknown	unknown	gnl\|CDD\|274514
NZ_CP041215.1\|WP_141457271.1\|1392586_1393705_+\|RIP-metalloprotease-RseP	unknown	unknown	gnl\|CDD\|223821
NZ_CP041215.1\|WP_167482810.1\|1407939_1408299_+\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|240265
NZ_CP041215.1\|WP_010082086.1\|1391907_1392234_+\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|225571
NZ_CP041215.1\|WP_041573541.1\|1413851_1415009_-\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|235541
NZ_CP041215.1\|WP_006279484.1\|1392208_1392487_-\|succinate-dehydrogenase-assembly-factor-2	unknown	unknown	gnl\|CDD\|377166
NZ_CP041215.1\|WP_141457275.1\|1401123_1402683_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|237164
NZ_CP041215.1\|WP_015589367.1\|1407305_1407878_-\|NifU-family-protein	unknown	unknown	gnl\|CDD\|378032
NZ_CP041215.1\|WP_141457276.1\|1402667_1404011_+\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_CP041215.1\|WP_010963022.1\|1411788_1412547_+\|cytochrome-c1	unknown	unknown	gnl\|CDD\|366950
NZ_CP041215.1\|WP_141457278.1\|1405308_1406061_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP041215.1\|WP_007550541.1\|1412831_1412984_+\|transposase	unknown	unknown	gnl\|CDD\|279973
NZ_CP041215.1\|WP_141457273.1\|1397083_1399966_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235832
NZ_CP041215.1\|WP_141457280.1\|1413025_1413763_+\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NZ_CP041215.1\|WP_006280242.1\|1410190_1411420_+\|cytochrome-b/b6	unknown	unknown	gnl\|CDD\|214440
NZ_CP041215.1\|WP_015589368.1\|1406085_1407309_-\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234586
NZ_CP041215.1\|WP_006279640.1\|1396606_1397038_+\|3-hydroxyacyl-ACP-dehydratase-FabZ	unknown	unknown	gnl\|CDD\|234568
NZ_CP041215.1\|WP_141456652.1\|1399985_1400752_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP041215.1\|WP_077188197.1\|1396050_1396602_+\|OmpH-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|214922

Protein	Function_ID	Function_description	E-value
NZ_CP041215.1\|WP_070357063.1\|1408318_1409812_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|225567	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane].	8.4656e-32
NZ_CP041215.1\|WP_015589374.1\|1393713_1396050_+\|outer-membrane-protein-assembly-factor-BamA	gnl\|CDD\|274514	TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP041215.1\|WP_141457271.1\|1392586_1393705_+\|RIP-metalloprotease-RseP	gnl\|CDD\|223821	COG0750, COG0750, Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane].	9.68204e-76
NZ_CP041215.1\|WP_167482810.1\|1407939_1408299_+\|DnaJ-domain-containing-protein	gnl\|CDD\|240265	PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional.	1.10144e-13
NZ_CP041215.1\|WP_010082086.1\|1391907_1392234_+\|cell-division-protein-ZapA	gnl\|CDD\|225571	COG3027, zapA, Cell division protein ZapA (stimulator of FtsZ polymerization and Z-ring component) [Cell cycle control, cell division, chromosome partitioning].	1.21984e-05
NZ_CP041215.1\|WP_041573541.1\|1413851_1415009_-\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|235541	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated.	2.14199e-155
NZ_CP041215.1\|WP_006279484.1\|1392208_1392487_-\|succinate-dehydrogenase-assembly-factor-2	gnl\|CDD\|377166	pfam03937, Sdh5, Flavinator of succinate dehydrogenase. This family includes the highly conserved mitochondrial and bacterial proteins Sdh5/SDHAF2/SdhE. Both yeast and human Sdh5/SDHAF2 interact with the catalytic subunit of the succinate dehydrogenase (SDH) complex, a component of both the electron transport chain and the tricarboxylic acid cycle. Sdh5 is required for SDH-dependent respiration and for Sdh1 flavination (incorporation of the flavin adenine dinucleotide cofactor). Mutational inactivation of Sdh5 confers tumor susceptibility in humans. Bacterial homologs of Sdh5, termed SdhE, are functionally conserved being required for the flavinylation of SdhA and succinate dehydrogenase activity. Like Sdh5, SdhE interacts with SdhA. Furthermore, SdhE was characterized as a FAD co-factor chaperone that directly binds FAD to facilitate the flavinylation of SdhA. Phylogenetic analysis demonstrates that SdhE/Sdh5 proteins evolved only once in an ancestral alpha-proteobacteria prior to the evolution of the mitochondria and now remain in subsequent descendants including eukaryotic mitochondria and the alpha, beta and gamma proteobacteria. This family was previously annotated in Pfam as being a divergent TPR repeat but structural evidence has indicated this is not true. The E. coli protein, YgfY also acts as the antitoxin to the membrane-bound toxin family Cpta, pfam13166, whose E. coli member YgfX, expressed from the same operon as YgfY.	1.9304e-21
NZ_CP041215.1\|WP_141457275.1\|1401123_1402683_+\|cation:proton-antiporter	gnl\|CDD\|237164	PRK12664, PRK12664, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
NZ_CP041215.1\|WP_015589367.1\|1407305_1407878_-\|NifU-family-protein	gnl\|CDD\|378032	pfam08712, Nfu_N, Scaffold protein Nfu/NifU N terminal. This domain is found at the N-terminus of NifU and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the the assembly of iron-sulphur clusters.	6.33488e-41
NZ_CP041215.1\|WP_141457276.1\|1402667_1404011_+\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_CP041215.1\|WP_010963022.1\|1411788_1412547_+\|cytochrome-c1	gnl\|CDD\|366950	pfam02167, Cytochrom_C1, Cytochrome C1 family.	2.85276e-130
NZ_CP041215.1\|WP_141457278.1\|1405308_1406061_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	3.28605e-81
NZ_CP041215.1\|WP_007550541.1\|1412831_1412984_+\|transposase	gnl\|CDD\|279973	pfam01710, HTH_Tnp_IS630, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family includes insertion sequences from Synechocystis PCC 6803 three of which are characterized as homologous to bacterial IS5- and IS4- and to several members of the IS630-Tc1-mariner superfamily.	0.000368621
NZ_CP041215.1\|WP_141457273.1\|1397083_1399966_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|235832	PRK06567, PRK06567, putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated.	0
NZ_CP041215.1\|WP_141457280.1\|1413025_1413763_+\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	6.42373e-126
NZ_CP041215.1\|WP_006280242.1\|1410190_1411420_+\|cytochrome-b/b6	gnl\|CDD\|214440	MTH00156, CYTB, cytochrome b; Provisional.	9.60759e-176
NZ_CP041215.1\|WP_015589368.1\|1406085_1407309_-\|histidine--tRNA-ligase	gnl\|CDD\|234586	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed.	0
NZ_CP041215.1\|WP_006279640.1\|1396606_1397038_+\|3-hydroxyacyl-ACP-dehydratase-FabZ	gnl\|CDD\|234568	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ.	8.74769e-83
NZ_CP041215.1\|WP_141456652.1\|1399985_1400752_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	4.72894e-33
NZ_CP041215.1\|WP_077188197.1\|1396050_1396602_+\|OmpH-family-outer-membrane-protein	gnl\|CDD\|214922	smart00935, OmpH, Outer membrane protein (OmpH-like). This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.	3.77816e-18

>NZ_CP041215.1|WP_141457276.1|1402667_1404011_+|signal-recognition-particle-protein
MFKSLTESLNSVFSKLRGKSIISEDDFNLAMREIRIALIEADVSLEVAKKFINDIKDKVIGEKVIKSVSPAQMIIKIVQDNLVAVLGSEKSDLNLAVKPPAVIMMVGLQGAGKTTTSGKLALKLKKQKKKVMLASLDIYRPAAQKQLEVLGKQIDVQTLPVVIDEKPITITKRALATAKNDNCDVLILDTAGRLHIDNNMMNELKAVKEIASPAEVILVADAMIGQDAVNIAKSFNEVIGVTGIILTRVDGDARGGAALSMKMIADCPIKFIACGEKLSDLDDFYPDRIAKRILSMGDVVSLVEKAAEIVGQEEIDKLQKKVKKGKFDLNDLVGMLKTLSKMDGISNIMKFIPSSFTKKLSSSVPDDNKVKKYIAIINSMTEKERQNPDILNGKRRLRISKGSGTTVTDINLLIKQYNQMSSMVNKFSKVDHSKLKESDLMDMLSRK
>NZ_CP041215.1|WP_141457275.1|1401123_1402683_+|cation:proton-antiporter
MQLYKSSLLLLLTVLIVIVLKLPENLSIAVNWSLPILDFDLSFRTILISFLSVAFLAVLPAQNLTFSEMLSFAAYTISSLYAVLSEHMILVIIFCELMTISAFFIIAASCRDSGPAIRYACVHFFVGVILIAGLALQSTNLIILGLLINCACFPFSFWVVDAYPAASLHGTTYLSLFTTKVSFLVMLLHTYNLWQDCTEILALVGTITAIYSIIFASLEQNIRRFLCYNVVGQMGLLIIAGGLLSPSEKAIPILILHIIFFLVYQSLLFVVSNSIISRTKTISFNGAGKLMSVEGMCAIIAILTMAAFPGTAGFISKSYITAEIEASGANLEVYKNLYKILNLLLYLSVGLKFLYYIFIAKSKSKPLAERGGKMTMIILAFICVIAGNPYLPIYNKPSIFDFVYNTKNILSQFNLLLCTTLLFILLRKLFYPRINFKMDVDWIFRAFIPYIILLFNQLVFKVREMSANVLQNLTNSLTSLYFDNITKLKEVLGYNSVSFVSASSLFLMSILLMLLCLSR
>NZ_CP041215.1|WP_141456652.1|1399985_1400752_-|IS5-family-transposase
MYPSDISDKEWEILEPSVAQGAVGRPRKHNIRTIINAIRYIMKGGCQWRMLPKDFPPWKTVYDYFLRWRNSGKLEEIHNMLVKKVRKMVGKNEIPSVGIIDSQSVKTTQKGDPEDMMPGKKIKGRKRHIIVDTIGLIITADVHSAGIQDRDGALNLFTQAKRKAPTLQRFLADQGYIGKLQNYCLLKTGCLLTITKKAADAVGFQVIPKRWIVERTFAWLSNFRRMSKDYEHSPLTSKTNISFNMITIMLAKLAA
>NZ_CP041215.1|WP_141457273.1|1397083_1399966_+|FAD-dependent-oxidoreductase
MKLNFKISFSNLYTRNGLIKLDETFLNYIKSCDESLFCSLIEAREKAASSSMSSQCHLPSSQCHPPSSQCLTLGSRKQEGRSATWMTDSQLIVDLSYLLDEFIAKLFNVEKEIEELKKKHNDFAVIYKCKRLFVQRYALKKYTNVANIDITNKLSHFLTLPTTEKNFAEQVMHWFEDKENHKEEIELAAQYAVWRVKNKQSILFSIHKKIDHENLIPFSKKEVDKVEVLYSNEVKRRYGFDLTSKKVSLNKALDNAHYCIFCHKQSKDSCSKGLINNDNTFKQSPLKVELHGCPLEQKISEMNLVKSEGYSIASLAIVMIDNPLCAATGHRICNDCMNSCIYQKQEPVNVPAIETRILDDVLSLPYGFEIYSLLSRWNPLNFQRSLPRGNTGKNVLVVGLGPAGFNLAHHLLNDGHNVIAIDGLKIEPLIDNFQLIKDFKHEKLSERMAGGFGGVAEYGITSRWDKNYLKIIRLLLERRENFVLYGGIRFGGTINADDAFNLGFDHIALALGSGKPRMIKIKNILARGVRMASDFLMSLQLTGALKFDSIANLQVRMPIVVIGAGLTAIDTATEALAYYPIQVEKFLLRYEILVDKYGKDCVEKDWTEEEREIANEFISHAQLIREKQKLAKKENREIKILELMQSLGGVKVIYRKELKDSPSYRLNSEEVQNALSEGIYFIENLEPVEVVTDKYNHAELIKLIDTKSGEIKRIKARSIFIAAGTEPNTVIATEDKKHFKLSNGYFTQLNSLGKEIDPIFSPKMQNKDRILVYKQGNKTISFFGDLHPSYSGSVVKAMASAKNGYPIISQLLNRVNSFVSVIPVCDVVGQKKNAWPSVEDLANKELFNRIKEQFTAKVIKVQYLTDKVVEIVIKAPLAAKNFKPGQFFRLQNFETNGRKANNTNLAMEGIAVTGTEVDKKKGIISTIVLEIGGSTNLCRHLREGEQIILMGPTGRPTEVY
>NZ_CP041215.1|WP_006279640.1|1396606_1397038_+|3-hydroxyacyl-ACP-dehydratase-FabZ
MQFNISDIIKILPHSYPFLLVDRVIECDPGKSIKAIKNVTFNEPFFIGHFPGHPIMPGVLIIESLAQASAICVLGKETIENKVVYLRSIENAKFRKPVTPGDTLILQANIQSVCLGVHKFRCIASVSEEKVAEATISAVLQNK
>NZ_CP041215.1|WP_077188197.1|1396050_1396602_+|OmpH-family-outer-membrane-protein
MKYIQLFISVIALIISLFVGYKFVGYQPQNTKAAIIDSDKVINESLALQNIQQQIKEQNSRLQQEFESELEKLKPSKEEFELLSEEAKKEKTEQFNKHTVNTRDNYAKKMLHLEESYRDAVESVFNKIKEVAKKTAEKNNIDLVLFISKKNQVLYSMDEVDLSDVVLNNINKKIPEFALKGIE
>NZ_CP041215.1|WP_015589374.1|1393713_1396050_+|outer-membrane-protein-assembly-factor-BamA
MKKLFYILVVVFISFPALLVALGTAEKVQVKDVKCIGNERVSNQTIGFYIKLKSGDYINDDDIDSIIKDLYKTKLFASVNAYIDDKKNLVIKIQENPLINKIILKGNKLFNSKELLNNVIQSKSLTIFTETKLQNDLMNLITTYRNNGKVGVKIEYELEKLDSNRVNLIFKIKEGKTSKIKDIRFIGNKNFSENELEQVIKRHSNDIFSKLFRAIFKGENHYSPQYLLINTELLDRFYSSKGYIQNNIQPIVEVDNNNQTELTFLIDEGQQYLFGNNEVNIETEIQDLSLKEEILDFITEENDKIFNRVKINNTVEKINKYLNEKGYIFAKVNPEYAQRDNVVDVTYRVLPGKKIYINQITIDGNDRTLDKVIRSKLSVAEGDAYNISEIQKSRKKLMSSDFFETVKVNSYAVNDNTVNLDLNVKEKNTTSLYLGGGVSLPGGALIKIDLKDRNLFGTGKELSFALEKSQYVFSTDLEFVENNFNDSDTSLGVDVFYEKQDKPNTTFDSCDMGFFTKLSYKVTENLTNSLRYSYKYNHIHMDNKGGQDTDISEIILDRKGEHQISSVGYTLAHNKLDNLYTPKEGYLLRLSQDISGLGGNVNFLKSEFLSFYTHPILSKIDDDITLRFKMAAGHIFSYTDENLNIGQHFFKGGNEIRGFDLSGIGPRAEDKNKSSLGGKTYFNLTQQVDFPLPKLYDYAGIKGSLFVDYATLFGLDDKNKKYEGKYYDSKLVRVSPGFGFSMLSPFGRLRLDFGFPLVKESYDIIPSPNVKFSIEAGI
>NZ_CP041215.1|WP_141457271.1|1392586_1393705_+|RIP-metalloprotease-RseP
MELISNLIHQFSDGIYYFLSFSLIISVIVFVHEYGHYVVAKACKVKVESFSIGFGPEIFGFNDKSGTRWKLSAVPLGGYVKMLGDTNAASVPADQQELTEEEKLYSFHTKPRHKKAAVVFAGPFANMVFAVIAFTIFFSIAGYYRTPPVIENVIEGSAAKQAGLLPGDTITQINEHKIKYFEDISRVIMSNPKTRMEIEYSRNNEKHRTSLTPLIIKDKDVFGNTIERETIGIISVNTLKQSSFLGAVSLSVSETYHTMCLTIKALFHIIVGKRSINEIGGPIKIAKYSGQLAKKGFIMVLYFMAIISANLAAINLLPIPLLDGGHLFHYIIEAVIRRDLSLKCQKYAAIFGALVLFLLMATGMSNDIRDLF
>NZ_CP041215.1|WP_006279484.1|1392208_1392487_-|succinate-dehydrogenase-assembly-factor-2
MTDTSLLRRKLIYRSWHRGCKETDILLGHFALKYLDKFSLSELIEYEKIVDLDDYELYCYITRKTNLPPGLNSQIVNLIACFIEANPLCTQD
>NZ_CP041215.1|WP_010082086.1|1391907_1392234_+|cell-division-protein-ZapA
MQVVEIVIRNNTYKISCESGKGNHLLRLANSFDKLVSSVSQKTGGKGSDALNFLLAALILEDKILELTKRLDEVNQEREKYRNEKRIEYTEVLDKVNKIITNLECIKD
>NZ_CP041215.1|WP_141457278.1|1405308_1406061_+|5'/3'-nucleotidase-SurE
MIILITNDDGFGSEGIKLLKEIARNFASEIWIVAPDTDRSGAARSLDYPVKQSIGINQHSEREFSVSGTPADCAIIALNKVMNKKPDLILSGVNIGSNVGDDICYSGTIGAVMEGAARSIPSIALSQVYHDKIDWHNTKVFAPKVIAKLVKVGWPKNIVMSVNFPATEKVKGVEFAEQGEYNIDGDLIFTENSNGSFSLNWSREHSGSGSINKIKEGFITITPVKLDFTDYDTLNAMKNSCADEFSSIAD
>NZ_CP041215.1|WP_015589368.1|1406085_1407309_-|histidine--tRNA-ligase
MTNQTVRGTKDLLFDEWYKFKYIQQTANRISSLYGFLPAQTPIFEYTEVFTKTLGDSSDIITKEMYSFNDKGGKSITLRPEFTAAIVRLLIEKKLQTPIKLFSTGPAFRYERPQKGRQRQFHQINFEVFGIEDPKADVELISLAQHLLTEFGINKNVKLEINSLGDGETITKYREALILYFTKYQNDLSEDSKNRLIKNPLRILDSKDEKDRLIISDAPKISNYYTKESSDFFEQILNGLTILDIPYTVNNKLVRGLDYYCHTVFEFVTEDLGAQGAVFAGGRYDNLVSSVGGKHTPAIGFAGGIERIMELINYSPKEERPIYLIPIGREAEKHALTLANELRRNSLYVSYEHSGTVKNRMKKASQANAKIVLIFGNDELNNNTVKVKNMDTGEEKIIARDNTIENI
>NZ_CP041215.1|WP_015589367.1|1407305_1407878_-|NifU-family-protein
MFIQIEETPNPNTLKFLPGFAILNEGETADFSNANEIKNSKLAANLFQIEHVVRVFFGHDFISVTKLGEINWDTLKVEILTTIMDHFTSGGKALNKEGVNDNNIPNEEFFDESDIEIVNRIKELMESYIKPAVAQDGGDIKFRGYKDGIVYVELQGACSGCPSAAITLKQGVQNMLSYHIPEVAGIETTL
>NZ_CP041215.1|WP_167482810.1|1407939_1408299_+|DnaJ-domain-containing-protein
MSFIFFLFLIFIVVTFVLPSVVIFFLFLTKKNNMSFMMNSILSKFLNEFSSSRSYTENYTGDNMSKDEALKILGLNPEASQNEINKAYQNLMKLVHPDKGGSEYFAQKLNAARDKLLKK
>NZ_CP041215.1|WP_070357063.1|1408318_1409812_-|N-acetylmuramoyl-L-alanine-amidase
MKIQLSKVNKYLLVLLITVSAFLISGQVSSSSNIENDFQDLQEKLPLLKDQDLLFLDPASALNYGDRAGKKVLMVIVHHTETSTLKGTKDTLNARGLSVHFIVDRDGSITLMVPLEKEAWHAGISYARVKVDSKLEELRKLNNYSVGIEIVNTGLEPFPEEQMRSVKELILYLMERFKIKRDMIFSHSEIGTIVYDPELGYTMRKPDPHKLFDWELLEKNEIGLHISDRINPKDAKHKMGKTLYKAGDRNEGILKLKQRLNRFFYKIEPWNDKKGNVIFPDNNADYSDEFDENFVWVIYQFSIHNLPREIRKDLPLKLEQADIFPEFFSEYSHGISSSYLTFSEKIKSTLQPCLSKVDYENLLSSLAQYENNISPDASTTLMYKIKLYYDSYLRYRIWSSLYKPFKLNVLEELEILKSGVLSLKSLDSSKAAEVSSLIDSFKVDISLEFQGFEKQWFQEFKNAWRQEFIPSLEEQITWTALHEAILEYLEKAKEEIR
>NZ_CP041215.1|WP_006280242.1|1410190_1411420_+|cytochrome-b/b6
MQEDNKKETIKEEKGILGWIEYRLPIFSFLRHTASYQVPKNLNYAWNFGSLAGIALILQIITGIFLAMHYTPHVDYAFNSVERIMRDVNYGWLIRYTHAVGASLFFMVVYVHIMRGLYYGSYKRPREMVWFIGIFIFFAMMATAFMGYVLPWGQMSFWGATVITNLFSAIPLIGNKIVIWLWGGFSVDNPTLNRFFALHYLLPFVIIALAMLHVIALHRFGSGNPSGVEVKSDKDTIPLYPYYIVKDCITFGLFFVVLFAFVFYAPNYLGHPDNYIEADSMVTPVHIVPEWYFLPFYAMLRSIPDKLTGVLTMFASILVWFLLPWLDKSKVKSGAYRPVFKKFFWVFAINFVLLAWLGGQEVKEPYITMSRLSTLYYFAYFVIVLPLLSKYEKPKEPPKTLSDSVPEMR
>NZ_CP041215.1|WP_010963022.1|1411788_1412547_+|cytochrome-c1
MGSNVFAIFCMLFLSSLISAEEFKSSPNKKIDWKFDGIVGSFDRESIQRGYKVYKEVCAACHSMNRVAFRNLQDVGFSEEDVKQIAASYQVKDGPNDLGEMFDRPGVPSDYFIAPFDTKEAAAASNNGAVPPDLSLIIKARHDGANYVYSLLTGYQNGEHDENDLYFNSYFPTGRLAMAPPLSEGMVEYDGARQATVENMAYDVINFLQWAAEPELERRHKLGLKVVAYFIILTVFFVLTNNKVWSKLYKKK
>NZ_CP041215.1|WP_007550541.1|1412831_1412984_+|transposase
MPAAYSYDLRKKAMEALDEGESREAVAARFKIGRTTLWEWQHCRLDHKLC
>NZ_CP041215.1|WP_141457280.1|1413025_1413763_+|tRNA-pseudouridine(38-40)-synthase-TruA
MRYKITVEYNGSSFSGWQKQQHSANSIQEKIENAIFNFSGEKIALYCGGRTDAGVHALGQVAHFDMEKECELYRIRNAINYHLKSIPIVVLNTEVVDDAFHARFSAKKRYYEYRIVNRYAPAALETGYVWQVFNPLDVNIMREAAKHLLGKHDLSSFRSKDCHAANPIRTIDDIDIVQNGNHIHIKISAISFLHNQVRIIAGTLVEFGKNRTNPQEMLHILSQCKRSAAGVTAPPFGLYLVKIDY
>NZ_CP041215.1|WP_041573541.1|1413851_1415009_-|DNA-polymerase-III-subunit-beta
MSEVAGVDTEIKKQNSVCEQMRFSVSRTSLLNTLSRVSGVVERRNAIDVLACINIKAQHGSIKLMATDLDISMFASLAATVLTEGEVKISAHTLHDIVKKLPADLDVNFEVNNQGKLLMSCGNANFSLPNVVSSSFPALEEDNYKYDFTLLNTDLIDLLTKTKFAVSLDDTRYNLNGIYLHTDEQFLYCVATDGHRLSCIKRPKPGNINGEFGVIIPRKTVMELLKILDDCNEIKVKLSDRKIKFTCGEYILISKLIDGTFPNYKAVIPASQDKHMIIESKKLSDVIDRVSVVVSDKVKSIKFSLQEKLLTLHSNSQECSDATESIEVDYNEAPIEIGFNSRYLLDVLSCIKNKCKFSLADGNSATIITDEDDSNVLYVVMPMRT

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP041215_3	3.1\|401880\|39\|NZ_CP041215\|CRT	401880-401918	39	NZ_CP041215.1	1056819-1056857	0	1.0
NZ_CP041215_3	3.1\|401880\|39\|NZ_CP041215\|CRT	401880-401918	39	NZ_CP041215.1	1290942-1290980	0	1.0
NZ_CP041215_3	3.2\|401951\|51\|NZ_CP041215\|CRT	401951-402001	51	NZ_CP041215.1	98031-98081	0	1.0
NZ_CP041215_3	3.2\|401951\|51\|NZ_CP041215\|CRT	401951-402001	51	NZ_CP041215.1	138767-138817	0	1.0
NZ_CP041215_3	3.2\|401951\|51\|NZ_CP041215\|CRT	401951-402001	51	NZ_CP041215.1	601975-602025	0	1.0
NZ_CP041215_3	3.2\|401951\|51\|NZ_CP041215\|CRT	401951-402001	51	NZ_CP041215.1	7776-7826	0	1.0
NZ_CP041215_3	3.2\|401951\|51\|NZ_CP041215\|CRT	401951-402001	51	NZ_CP041215.1	7865-7915	0	1.0
NZ_CP041215_3	3.2\|401951\|51\|NZ_CP041215\|CRT	401951-402001	51	NZ_CP041215.1	1291084-1291134	0	1.0
NZ_CP041215_3	3.3\|402034\|41\|NZ_CP041215\|CRT	402034-402074	41	NZ_CP041215.1	1056890-1056930	0	1.0
NZ_CP041215_3	3.3\|402034\|41\|NZ_CP041215\|CRT	402034-402074	41	NZ_CP041215.1	1291013-1291053	0	1.0
NZ_CP041215_4	4.1\|467841\|57\|NZ_CP041215\|CRISPRCasFinder	467841-467897	57	NZ_CP041215.1	927921-927977	0	1.0
NZ_CP041215_7	7.2\|895258\|17\|NZ_CP041215\|PILER-CR	895258-895274	17	NZ_CP041215.1	602164-602180	0	1.0
NZ_CP041215_7	7.2\|895258\|17\|NZ_CP041215\|PILER-CR	895258-895274	17	NZ_CP041215.1	1175998-1176014	0	1.0
NZ_CP041215_10	10.1\|1056956\|50\|NZ_CP041215\|PILER-CR	1056956-1057005	50	NZ_CP041215.1	1291068-1291117	0	1.0
NZ_CP041215_10	10.2\|1057042\|40\|NZ_CP041215\|PILER-CR	1057042-1057081	40	NZ_CP041215.1	97972-98011	0	1.0
NZ_CP041215_16	16.1\|1404744\|51\|NZ_CP041215\|CRISPRCasFinder	1404744-1404794	51	NZ_CP041215.1	860833-860883	0	1.0
NZ_CP041215_4	4.1\|467841\|57\|NZ_CP041215\|CRISPRCasFinder	467841-467897	57	NZ_CP041215.1	895072-895128	1	0.982
NZ_CP041215_7	7.2\|895258\|17\|NZ_CP041215\|PILER-CR	895258-895274	17	NZ_CP041215.1	138868-138884	1	0.941
NZ_CP041215_7	7.2\|895258\|17\|NZ_CP041215\|PILER-CR	895258-895274	17	NZ_CP041215.1	138952-138968	1	0.941
NZ_CP041215_7	7.2\|895258\|17\|NZ_CP041215\|PILER-CR	895258-895274	17	NZ_CP041215.1	786869-786885	1	0.941
NZ_CP041215_7	7.2\|895258\|17\|NZ_CP041215\|PILER-CR	895258-895274	17	NZ_CP041215.1	1211112-1211128	1	0.941
NZ_CP041215_7	7.2\|895258\|17\|NZ_CP041215\|PILER-CR	895258-895274	17	NZ_CP041215.1	1225239-1225255	1	0.941
NZ_CP041215_10	10.1\|1056956\|50\|NZ_CP041215\|PILER-CR	1056956-1057005	50	NZ_CP041215.1	1326528-1326577	1	0.98
NZ_CP041215_10	10.2\|1057042\|40\|NZ_CP041215\|PILER-CR	1057042-1057081	40	NZ_CP041215.1	138708-138747	2	0.95
NZ_CP041215_10	10.2\|1057042\|40\|NZ_CP041215\|PILER-CR	1057042-1057081	40	NZ_CP041215.1	138881-138920	2	0.95

1. spacer 3.1|401880|39|NZ_CP041215|CRT matches to position: 1056819-1056857, mismatch: 0, identity: 1.0

cggtatgacggtttgcggcggcatgacctcgtcattccc	CRISPR spacer
cggtatgacggtttgcggcggcatgacctcgtcattccc	Protospacer
***************************************

2. spacer 3.1|401880|39|NZ_CP041215|CRT matches to position: 1290942-1290980, mismatch: 0, identity: 1.0

cggtatgacggtttgcggcggcatgacctcgtcattccc	CRISPR spacer
cggtatgacggtttgcggcggcatgacctcgtcattccc	Protospacer
***************************************

3. spacer 3.2|401951|51|NZ_CP041215|CRT matches to position: 98031-98081, mismatch: 0, identity: 1.0

atgaatcgcggtatgacggtgtagatgatggttaagtaattcgtcatcccg	CRISPR spacer
atgaatcgcggtatgacggtgtagatgatggttaagtaattcgtcatcccg	Protospacer
***************************************************

4. spacer 3.2|401951|51|NZ_CP041215|CRT matches to position: 138767-138817, mismatch: 0, identity: 1.0

atgaatcgcggtatgacggtgtagatgatggttaagtaattcgtcatcccg	CRISPR spacer
atgaatcgcggtatgacggtgtagatgatggttaagtaattcgtcatcccg	Protospacer
***************************************************

5. spacer 3.2|401951|51|NZ_CP041215|CRT matches to position: 601975-602025, mismatch: 0, identity: 1.0

atgaatcgcggtatgacggtgtagatgatggttaagtaattcgtcatcccg	CRISPR spacer
atgaatcgcggtatgacggtgtagatgatggttaagtaattcgtcatcccg	Protospacer
***************************************************

6. spacer 3.2|401951|51|NZ_CP041215|CRT matches to position: 7776-7826, mismatch: 0, identity: 1.0

atgaatcgcggtatgacggtgtagatgatggttaagtaattcgtcatcccg	CRISPR spacer
atgaatcgcggtatgacggtgtagatgatggttaagtaattcgtcatcccg	Protospacer
***************************************************

7. spacer 3.2|401951|51|NZ_CP041215|CRT matches to position: 7865-7915, mismatch: 0, identity: 1.0

atgaatcgcggtatgacggtgtagatgatggttaagtaattcgtcatcccg	CRISPR spacer
atgaatcgcggtatgacggtgtagatgatggttaagtaattcgtcatcccg	Protospacer
***************************************************

8. spacer 3.2|401951|51|NZ_CP041215|CRT matches to position: 1291084-1291134, mismatch: 0, identity: 1.0

atgaatcgcggtatgacggtgtagatgatggttaagtaattcgtcatcccg	CRISPR spacer
atgaatcgcggtatgacggtgtagatgatggttaagtaattcgtcatcccg	Protospacer
***************************************************

9. spacer 3.3|402034|41|NZ_CP041215|CRT matches to position: 1056890-1056930, mismatch: 0, identity: 1.0

cggtatgacggttcgcgcggtggcatgacctcgtcatcccg	CRISPR spacer
cggtatgacggttcgcgcggtggcatgacctcgtcatcccg	Protospacer
*****************************************

10. spacer 3.3|402034|41|NZ_CP041215|CRT matches to position: 1291013-1291053, mismatch: 0, identity: 1.0

cggtatgacggttcgcgcggtggcatgacctcgtcatcccg	CRISPR spacer
cggtatgacggttcgcgcggtggcatgacctcgtcatcccg	Protospacer
*****************************************

11. spacer 4.1|467841|57|NZ_CP041215|CRISPRCasFinder matches to position: 927921-927977, mismatch: 0, identity: 1.0

agcttatcgtcacgccgccacgaaccgtcataccgcgattcattcgcggtatctcag	CRISPR spacer
agcttatcgtcacgccgccacgaaccgtcataccgcgattcattcgcggtatctcag	Protospacer
*********************************************************

12. spacer 7.2|895258|17|NZ_CP041215|PILER-CR matches to position: 602164-602180, mismatch: 0, identity: 1.0

ttacttaaccgtcatac	CRISPR spacer
ttacttaaccgtcatac	Protospacer
*****************

13. spacer 7.2|895258|17|NZ_CP041215|PILER-CR matches to position: 1175998-1176014, mismatch: 0, identity: 1.0

ttacttaaccgtcatac	CRISPR spacer
ttacttaaccgtcatac	Protospacer
*****************

14. spacer 10.1|1056956|50|NZ_CP041215|PILER-CR matches to position: 1291068-1291117, mismatch: 0, identity: 1.0

ctaagagataccgcgaatgaatcgcggtatgacggtgtagatgatggtta	CRISPR spacer
ctaagagataccgcgaatgaatcgcggtatgacggtgtagatgatggtta	Protospacer
**************************************************

15. spacer 10.2|1057042|40|NZ_CP041215|PILER-CR matches to position: 97972-98011, mismatch: 0, identity: 1.0

cttgttagcgccgcggcggtatgacggttcgcggcggcat	CRISPR spacer
cttgttagcgccgcggcggtatgacggttcgcggcggcat	Protospacer
****************************************

16. spacer 16.1|1404744|51|NZ_CP041215|CRISPRCasFinder matches to position: 860833-860883, mismatch: 0, identity: 1.0

agcttatcgtcacgccgccacgaaccgtcataccgccgcggcgctaacaag	CRISPR spacer
agcttatcgtcacgccgccacgaaccgtcataccgccgcggcgctaacaag	Protospacer
***************************************************

17. spacer 4.1|467841|57|NZ_CP041215|CRISPRCasFinder matches to position: 895072-895128, mismatch: 1, identity: 0.982

agcttatcgtcacgccgccacgaaccgtcataccgcgattcattcgcggtatctcag	CRISPR spacer
agcttatcgtcacgccgccgcgaaccgtcataccgcgattcattcgcggtatctcag	Protospacer
*******************.*************************************

18. spacer 7.2|895258|17|NZ_CP041215|PILER-CR matches to position: 138868-138884, mismatch: 1, identity: 0.941

ttacttaaccgtcatac	CRISPR spacer
ttgcttaaccgtcatac	Protospacer
**.**************

19. spacer 7.2|895258|17|NZ_CP041215|PILER-CR matches to position: 138952-138968, mismatch: 1, identity: 0.941

ttacttaaccgtcatac	CRISPR spacer
ttgcttaaccgtcatac	Protospacer
**.**************

20. spacer 7.2|895258|17|NZ_CP041215|PILER-CR matches to position: 786869-786885, mismatch: 1, identity: 0.941

ttacttaaccgtcatac	CRISPR spacer
ttacttaaccatcatac	Protospacer
**********.******

21. spacer 7.2|895258|17|NZ_CP041215|PILER-CR matches to position: 1211112-1211128, mismatch: 1, identity: 0.941

ttacttaaccgtcatac	CRISPR spacer
ttacttaaccgccatac	Protospacer
***********.*****

22. spacer 7.2|895258|17|NZ_CP041215|PILER-CR matches to position: 1225239-1225255, mismatch: 1, identity: 0.941

ttacttaaccgtcatac	CRISPR spacer
ttgcttaaccgtcatac	Protospacer
**.**************

23. spacer 10.1|1056956|50|NZ_CP041215|PILER-CR matches to position: 1326528-1326577, mismatch: 1, identity: 0.98

ctaagagataccgcgaatgaatcgcggtatgacggtgtagatgatggtta	CRISPR spacer
ctaagagataccgcgaatgaatcgcggtatgacggtgtagacgatggtta	Protospacer
*****************************************.********

24. spacer 10.2|1057042|40|NZ_CP041215|PILER-CR matches to position: 138708-138747, mismatch: 2, identity: 0.95

cttgttagcgccgcggcggtatgacggttcgcggcggcat	CRISPR spacer
cttgttagcgccgcagcggtatgacggttcgtggcggcat	Protospacer
**************.****************.********

25. spacer 10.2|1057042|40|NZ_CP041215|PILER-CR matches to position: 138881-138920, mismatch: 2, identity: 0.95

cttgttagcgccgcggcggtatgacggttcgcggcggcat	CRISPR spacer
cttgttagcgccgcggcggtatgacggttcgtggcggtat	Protospacer
*******************************.*****.**

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041215_10	10.2\|1057042\|40\|NZ_CP041215\|PILER-CR	1057042-1057081	40	MN180249	UNVERIFIED: Wolbachia phage WO isolate Seq2WORi_AMD2 genomic sequence	19843-19882	3	0.925

1. spacer 10.2|1057042|40|NZ_CP041215|PILER-CR matches to MN180249 (UNVERIFIED: Wolbachia phage WO isolate Seq2WORi_AMD2 genomic sequence) position: , mismatch: 3, identity: 0.925

cttgttagcgccgcggcggtatgacggttcgcggcggcat	CRISPR spacer
cgtgttagcgccgcggcggtatgacgattcgcagcggcat	Protospacer
* ************************.*****.*******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3903 : 55554

Bacillus_virus(18.18%)

tRNA,protease,transposase,portal

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007549279.1\|3903_4614_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_006279489.1\|4597_4975_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_015589336.1\|5058_6309_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_141456644.1\|6315_7113_+	phosphoribosylformylglycinamidine synthase subunit PurQ	A9YX36	Burkholderia_phage	1.3e-21	31.4
WP_015589333.1\|9624_10650_-	LD-carboxypeptidase	NA	NA	NA	NA
WP_141456645.1\|10649_11267_-	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
WP_012673333.1\|11518_11752_+	hypothetical protein	NA	NA	NA	NA
WP_080717643.1\|11727_11991_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_141456646.1\|12226_13420_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	1.3e-84	44.1
WP_141456647.1\|13474_16018_-	hypothetical protein	NA	NA	NA	NA
WP_015589329.1\|16021_17509_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA
WP_141456648.1\|17922_19845_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
WP_015589327.1\|19853_21521_+	aminopeptidase P family protein	A0A0P0I8D7	Acinetobacter_phage	3.6e-85	35.7
WP_064125381.1\|21642_22008_+	hypothetical protein	NA	NA	NA	NA
WP_015589325.1\|22405_23050_+	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA
WP_015589324.1\|23055_23862_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_038198869.1\|24094_24379_+\|transposase	transposase	NA	NA	NA	NA
WP_095866567.1\|24400_24742_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	7.2e-09	42.5
WP_153801314.1\|24826_24991_+	hypothetical protein	NA	NA	NA	NA
WP_081600771.1\|24980_25145_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_015589323.1\|25359_27936_+	DNA polymerase I	A0A1B1IST8	uncultured_Mediterranean_phage	6.6e-46	31.5
WP_141457300.1\|27986_29006_+	hypothetical protein	NA	NA	NA	NA
WP_141456649.1\|29042_29822_-	exodeoxyribonuclease III	NA	NA	NA	NA
WP_141456650.1\|29821_30529_-	uroporphyrinogen-III synthase	NA	NA	NA	NA
WP_015589319.1\|30773_31265_-	hypothetical protein	NA	NA	NA	NA
WP_141456651.1\|31482_32901_+\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_153296798.1\|32956_33097_+	hypothetical protein	NA	NA	NA	NA
WP_015589317.1\|33187_34435_+	IscS subfamily cysteine desulfurase	H7BUW1	unidentified_phage	2.3e-36	39.1
WP_141457302.1\|34469_35429_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	4.9e-87	63.2
WP_141456652.1\|35459_36225_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_015589315.1\|36549_37713_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_007548965.1\|37795_38293_-	hypothetical protein	NA	NA	NA	NA
WP_141456653.1\|38613_39315_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	1.1e-24	35.2
WP_015589313.1\|39307_40090_-	ABC transporter permease	NA	NA	NA	NA
WP_041573607.1\|40429_40612_+	50S ribosomal protein L32	NA	NA	NA	NA
WP_141457304.1\|40622_41660_+	phosphate acyltransferase PlsX	NA	NA	NA	NA
WP_141456654.1\|41652_42609_+	beta-ketoacyl-ACP synthase 3	NA	NA	NA	NA
WP_141456655.1\|43344_44361_-	FAD-dependent oxidoreductase	G3MA85	Bacillus_virus	9.3e-20	28.6
WP_015589308.1\|44664_45993_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
WP_041573606.1\|46215_46698_+	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA
WP_141456656.1\|46813_47029_+	hypothetical protein	NA	NA	NA	NA
WP_141456657.1\|47025_48927_+\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	3.8e-131	38.2
WP_015589305.1\|48939_49458_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	2.4e-08	34.6
WP_015589304.1\|49486_50749_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA
WP_141456652.1\|51795_52561_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_015589302.1\|53908_54277_+	hypothetical protein	NA	NA	NA	NA
WP_141456658.1\|54380_54746_+	hypothetical protein	NA	NA	NA	NA
WP_141456652.1\|54788_55554_+\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

66291 : 123101

Bodo_saltans_virus(10.0%)

tRNA,terminase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007549940.1\|66291_66495_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_141456652.1\|66582_67349_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_041573545.1\|67956_68145_+	hypothetical protein	NA	NA	NA	NA
WP_007549043.1\|68242_68593_+	diacylglycerol kinase	NA	NA	NA	NA
WP_041573544.1\|68604_69549_-	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	1.6e-10	28.9
WP_141456661.1\|69539_71237_-	hypothetical protein	NA	NA	NA	NA
WP_141456662.1\|71298_73452_-	DUF4131 domain-containing protein	NA	NA	NA	NA
WP_015589412.1\|73594_74188_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
WP_015589411.1\|74204_75020_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	G3MA33	Bacillus_virus	3.8e-24	31.1
WP_015589410.1\|75393_76920_-	acyl-CoA carboxylase subunit beta	NA	NA	NA	NA
WP_141457306.1\|79365_80616_-	citrate synthase	NA	NA	NA	NA
WP_012673338.1\|80696_80966_-	30S ribosomal protein S20	NA	NA	NA	NA
WP_010963063.1\|81017_81743_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_141456663.1\|81798_82785_-	tyrosine recombinase	S5W9T9	Leptospira_phage	1.7e-13	27.4
WP_007549057.1\|82774_82945_-	hypothetical protein	NA	NA	NA	NA
WP_006280257.1\|83150_83786_-	chromosomal DNA replication initiator DnaA	NA	NA	NA	NA
WP_141456664.1\|83915_84980_-	AI-2E family transporter	NA	NA	NA	NA
WP_015589406.1\|85243_86437_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_141456665.1\|87401_88466_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_141456666.1\|88562_88967_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_015589403.1\|89201_90095_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	2.3e-94	65.5
WP_015589402.1\|90105_91704_-	iron ABC transporter permease	NA	NA	NA	NA
WP_015589401.1\|91833_92640_+	rhodanese-related sulfurtransferase	NA	NA	NA	NA
WP_141456667.1\|92681_93596_-	hypothetical protein	NA	NA	NA	NA
WP_141456668.1\|93653_96104_-	type I DNA topoisomerase	A0A1V0SB35	Catovirus	3.4e-100	32.1
WP_141456669.1\|96398_97850_-\|terminase	phage terminase large subunit	A0A0N9RQZ8	Pseudomonas_phage	5.9e-60	31.7
WP_015589397.1\|98842_99793_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA
WP_141456670.1\|99843_101373_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA
WP_015589395.1\|101556_102336_+	hypothetical protein	NA	NA	NA	NA
WP_006279579.1\|102352_102610_+	hypothetical protein	NA	NA	NA	NA
WP_015589394.1\|102613_102982_+	HIT domain-containing protein	NA	NA	NA	NA
WP_006279576.1\|103000_103354_+	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA
WP_006279574.1\|103357_103864_+	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA
WP_007548576.1\|103856_104429_+	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA
WP_007548577.1\|104432_105383_+	malate dehydrogenase	NA	NA	NA	NA
WP_006280340.1\|105410_106178_-	TatD family hydrolase	NA	NA	NA	NA
WP_006279569.1\|106174_106663_-	RNA pyrophosphohydrolase	NA	NA	NA	NA
WP_141456671.1\|106655_107273_-	AAA family ATPase	NA	NA	NA	NA
WP_141456672.1\|107446_107764_+	ribosome silencing factor	NA	NA	NA	NA
WP_041573543.1\|107754_107994_+	hypothetical protein	NA	NA	NA	NA
WP_007548582.1\|107995_109246_+\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	6.4e-63	34.9
WP_007548583.1\|110209_110539_+	SWIM zinc finger family	NA	NA	NA	NA
WP_141456674.1\|111409_111991_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_015589389.1\|111987_112968_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	2.3e-07	29.1
WP_141456675.1\|113045_113858_+	hypothetical protein	NA	NA	NA	NA
WP_141456676.1\|113974_114481_+	DNA-3-methyladenine glycosylase	NA	NA	NA	NA
WP_015589386.1\|114502_115888_-	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	3.8e-56	32.3
WP_141456677.1\|115913_117017_-	rod shape-determining protein RodA	NA	NA	NA	NA
WP_015589384.1\|117070_118537_-	NADH-ubiquinone oxidoreductase	NA	NA	NA	NA
WP_007548590.1\|118601_118916_+	NADH:ubiquinone oxidoreductase	NA	NA	NA	NA
WP_007548591.1\|118918_119374_+	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_015589382.1\|119559_120342_+	P-type conjugative transfer protein VirB9	NA	NA	NA	NA
WP_015589381.1\|120345_120942_-	ribonuclease HII	E3T5H8	Cafeteria_roenbergensis_virus	1.6e-24	40.4
WP_007548592.1\|120948_121929_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA
WP_141456678.1\|122152_122482_+\|transposase	transposase	NA	NA	NA	NA
WP_081600764.1\|122465_123101_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

131019 : 191145

Vibrio_phage(11.11%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_007552972.1\|131019_131289_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_007549647.1\|131408_131735_+\|transposase	transposase	NA	NA	NA	NA
WP_081600779.1\|131673_131964_+\|transposase	transposase	NA	NA	NA	NA
WP_141456681.1\|132177_133452_-	amino acid permease	NA	NA	NA	NA
WP_015589292.1\|135233_136400_+	aspartate kinase	NA	NA	NA	NA
WP_141456652.1\|136491_137257_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_141456682.1\|137393_138590_-	phosphoglycerate kinase	NA	NA	NA	NA
WP_015589417.1\|139774_140296_+	cytochrome b	NA	NA	NA	NA
WP_141456683.1\|140301_141330_+	2-nitropropane dioxygenase	NA	NA	NA	NA
WP_015589419.1\|141452_142676_+	hypothetical protein	NA	NA	NA	NA
WP_022626145.1\|142770_143145_+	hypothetical protein	NA	NA	NA	NA
WP_141456684.1\|143189_145544_+	type VI secretion protein	NA	NA	NA	NA
WP_141456685.1\|145524_148311_+	hypothetical protein	NA	NA	NA	NA
WP_015589424.1\|148924_149416_-	hypothetical protein	NA	NA	NA	NA
WP_141456686.1\|149486_150815_+	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	NA	NA	NA	NA
WP_015589426.1\|150884_151709_+	hypothetical protein	NA	NA	NA	NA
WP_015589427.1\|151754_152975_-	hypothetical protein	R9TRQ8	Vibrio_phage	3.5e-13	25.7
WP_010963080.1\|152978_153584_-	recombination protein RecR	NA	NA	NA	NA
WP_015589428.1\|154455_154875_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	2.0e-16	37.4
WP_015589429.1\|154988_155810_+	hypothetical protein	NA	NA	NA	NA
WP_010082099.1\|155810_156758_+	ferrochelatase	NA	NA	NA	NA
WP_006280195.1\|156828_157626_+	hypothetical protein	NA	NA	NA	NA
WP_015589431.1\|157629_158790_-	glutamate--cysteine ligase	NA	NA	NA	NA
WP_006280198.1\|158905_159460_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_141456687.1\|159461_160952_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A2H5BJT2	Erwinia_phage	6.1e-36	30.2
WP_015589432.1\|161020_161962_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_141456688.1\|161954_162746_-	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_006279836.1\|162891_163152_+	acyl carrier protein	NA	NA	NA	NA
WP_015589434.1\|163165_164437_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_010963091.1\|164676_165513_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_006279833.1\|165668_166946_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_015589436.1\|166955_167810_+	FAD-dependent thymidylate synthase	M4QT16	Loktanella_phage	3.9e-80	53.3
WP_141456689.1\|167882_169667_-	hypothetical protein	NA	NA	NA	NA
WP_141456690.1\|169811_172154_+	primosomal protein N'	NA	NA	NA	NA
WP_015589439.1\|172163_172763_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA
WP_141456691.1\|172849_175558_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	3.0e-89	35.9
WP_141456692.1\|176523_177399_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_006279825.1\|177567_177957_-	DUF1284 domain-containing protein	NA	NA	NA	NA
WP_015589442.1\|177953_178481_-	biotin transporter BioY	NA	NA	NA	NA
WP_141456693.1\|178566_179154_+	nitroreductase family protein	NA	NA	NA	NA
WP_049973622.1\|179131_179923_+	diaminopimelate epimerase	NA	NA	NA	NA
WP_141456694.1\|179931_180807_-	succinate--CoA ligase subunit alpha	A0A2K9L1S3	Tupanvirus	1.5e-18	37.1
WP_015589445.1\|180810_181962_-	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA
WP_006279819.1\|181999_182200_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_015589447.1\|182682_183369_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_015589448.1\|183537_184782_-	hypothetical protein	NA	NA	NA	NA
WP_015589449.1\|184830_185655_-	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA
WP_141456695.1\|185815_188299_+	response regulator	B5LWN8	Feldmannia_species_virus	5.5e-05	32.9
WP_006280226.1\|188389_189232_+	ParA family protein	Q8JL10	Natrialba_phage	1.9e-18	25.8
WP_006279814.1\|189228_190080_+	ParB/RepB/Spo0J family partition protein	S5VSZ7	Leptospira_phage	1.7e-14	35.5
WP_081600764.1\|190196_190832_-\|transposase	transposase	NA	NA	NA	NA
WP_141456678.1\|190815_191145_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_4

200972 : 522584

281

Wolbachia_phage(62.96%)

tRNA,head,transposase,capsid,plate,tail,portal,integrase,terminase

attL 482545:482604|attR 519667:520527

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141456652.1\|200972_201739_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_010081973.1\|202233_203106_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA
WP_010081974.1\|203124_204459_+	TldD/PmbA family protein	NA	NA	NA	NA
WP_006279919.1\|204633_204885_+	cold-shock protein	NA	NA	NA	NA
WP_015589458.1\|204920_206147_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.6e-50	32.1
WP_141456698.1\|206350_208657_+	AAA domain-containing protein	A0A223W0B1	Agrobacterium_phage	3.9e-138	38.6
WP_041573616.1\|208721_209618_+	class I fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_015589461.1\|209825_210902_+	quinone-dependent dihydroorotate dehydrogenase	A0A1V0SH91	Hokovirus	1.1e-13	26.3
WP_006279914.1\|211089_211788_+	ribonuclease III	A0A0P0YNE5	Yellowstone_lake_phycodnavirus	3.1e-30	36.5
WP_006279913.1\|212126_212669_-	hypothetical protein	NA	NA	NA	NA
WP_015589462.1\|212778_213309_-	phospholipase D family protein	E9P5Z4	Wolbachia_endosymbiont_wVitA_of_Nasonia_vitripennis_phage	5.5e-48	57.1
WP_015589463.1\|214166_215000_-	hypothetical protein	NA	NA	NA	NA
WP_141456652.1\|215386_216153_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_015589465.1\|216643_217129_+	RDD family protein	NA	NA	NA	NA
WP_007549093.1\|217188_217665_+	bacterioferritin	NA	NA	NA	NA
WP_015589466.1\|217666_218284_+	SURF1 family protein	NA	NA	NA	NA
WP_141456699.1\|218314_220033_-	potassium transporter	NA	NA	NA	NA
WP_015589468.1\|220038_220611_-	thioredoxin family protein	NA	NA	NA	NA
WP_015589469.1\|220719_221310_+	dTMP kinase	M1PSC7	Streptococcus_phage	1.1e-28	42.6
WP_141456700.1\|221302_221971_-	hypothetical protein	NA	NA	NA	NA
WP_012673393.1\|222125_223964_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	E5ESM9	Bathycoccus_sp._RCC1105_virus	3.5e-118	43.4
WP_141456701.1\|223976_225272_-\|tRNA	tRNA lysidine(34) synthetase TilS	A0A0N7G7K4	Chrysochromulina_ericina_virus	2.1e-08	26.2
WP_010081889.1\|225449_225929_-	OmpA family protein	NA	NA	NA	NA
WP_141456702.1\|226204_227626_+	carboxypeptidase M32	NA	NA	NA	NA
WP_141456703.1\|227649_228726_+	rod shape-determining protein MreB	NA	NA	NA	NA
WP_015589473.1\|228928_230032_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_015589474.1\|230760_231984_+	hypothetical protein	NA	NA	NA	NA
WP_012673395.1\|232046_232562_+	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	2.5e-37	47.6
WP_141456704.1\|233218_234364_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_015589476.1\|234467_235088_+	hypothetical protein	NA	NA	NA	NA
WP_015589477.1\|235071_235623_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
WP_015589478.1\|235667_236702_-	hypothetical protein	NA	NA	NA	NA
WP_022626165.1\|236838_237546_+	isoprenoid biosynthesis glyoxalase ElbB	NA	NA	NA	NA
WP_039963709.1\|237721_238030_+	hypothetical protein	NA	NA	NA	NA
WP_141456705.1\|238032_239868_-	penicillin-binding protein 2	NA	NA	NA	NA
WP_015589482.1\|239888_240818_+	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	NA	NA	NA	NA
WP_141456652.1\|240895_241662_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_141456706.1\|242241_242787_+	hypothetical protein	Q52PS5	Xanthomonas_phage	1.4e-25	39.4
WP_141456706.1\|243936_244482_-	hypothetical protein	Q52PS5	Xanthomonas_phage	1.4e-25	39.4
WP_141456707.1\|244502_245447_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	4.3e-128	80.5
WP_141456708.1\|246632_247289_+	DNA repair protein RadC	A0A1B2LRS6	Wolbachia_phage	1.2e-68	60.9
WP_141456709.1\|247392_248580_+	hypothetical protein	A0A1B2LRQ6	Wolbachia_phage	7.7e-167	82.1
WP_141456710.1\|248668_249583_+	helix-turn-helix domain-containing protein	E9P5Z7	Wolbachia_endosymbiont_wVitA_of_Nasonia_vitripennis_phage	8.2e-84	58.2
WP_019236581.1\|249608_250613_+	helix-turn-helix domain-containing protein	A0A1B2LRR7	Wolbachia_phage	3.9e-79	52.0
WP_019236582.1\|250724_251813_+\|transposase	IS481 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	3.0e-173	80.4
WP_141456711.1\|251908_252838_-	patatin	A0A1B2LRS3	Wolbachia_phage	8.8e-150	84.3
WP_141456712.1\|252836_253337_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	7.2e-74	84.8
WP_141456652.1\|253355_254122_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_141456713.1\|254552_255971_+\|portal	phage portal protein	A0A1B2LRR5	Wolbachia_phage	1.9e-257	93.8
WP_141456714.1\|255967_256999_+	S49 family peptidase	Q75QM8	Wolbachia_phage	7.0e-156	83.6
WP_141456715.1\|257076_257445_+\|head	head decoration protein	A0A1B2LRT0	Wolbachia_phage	2.9e-48	82.8
WP_141456716.1\|257470_258475_+\|capsid	major capsid protein	Q9JMM2	Wolbachia_phage	1.4e-190	96.7
WP_141457308.1\|258474_258786_+	hypothetical protein	E9P615	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.7e-44	87.4
WP_141456717.1\|258778_259300_+\|tail	phage tail protein	A0A1B2LRS9	Wolbachia_phage	1.7e-65	74.0
WP_141456718.1\|259296_259770_+	hypothetical protein	A0A1B2LRU9	Wolbachia_phage	6.0e-62	73.9
WP_141456719.1\|259756_260221_+\|plate	phage baseplate assembly protein V	A0A1B2LRU5	Wolbachia_phage	1.2e-67	79.2
WP_065095513.1\|260226_260481_+	hypothetical protein	A0A1B2LRW2	Wolbachia_phage	1.5e-19	97.8
WP_141456720.1\|260502_260838_+\|plate	baseplate assembly protein W	E9P610	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	7.5e-43	80.2
WP_141456721.1\|260840_261641_+\|plate	baseplate assembly protein J	A0A1B2LRR9	Wolbachia_phage	6.2e-120	86.7
WP_141456722.1\|261919_263086_+\|tail	phage tail protein	Q9JML5	Wolbachia_phage	1.3e-203	85.9
WP_141456723.1\|263254_263965_+	ankyrin repeat domain-containing protein	A0A1B2LRT4	Wolbachia_phage	6.4e-84	87.9
WP_141456724.1\|264003_264465_+	ankyrin repeat domain-containing protein	A0A1B2LRV4	Wolbachia_phage	9.1e-23	85.4
WP_141456725.1\|264469_264910_+	DUF2924 domain-containing protein	Q9JML2	Wolbachia_phage	1.4e-65	89.4
WP_141456726.1\|264902_266393_+	recombinase family protein	Q9JML1	Wolbachia_phage	3.3e-255	90.1
WP_141456727.1\|266459_267470_+	hypothetical protein	NA	NA	NA	NA
WP_141456728.1\|267587_267800_-	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_141456729.1\|268184_269267_-	hypothetical protein	A0A1B2LRR2	Wolbachia_phage	2.0e-153	75.7
WP_141456730.1\|269464_269920_-	Hsp20 family protein	A0A1B2LRT2	Wolbachia_phage	1.7e-74	92.7
WP_141456731.1\|271365_273624_-	hypothetical protein	Q9JML0	Wolbachia_phage	1.8e-15	25.4
WP_141456732.1\|274003_274660_+	exopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_141456733.1\|275188_279127_+	hypothetical protein	NA	NA	NA	NA
WP_141456734.1\|279458_284798_+	hypothetical protein	NA	NA	NA	NA
WP_141456735.1\|284779_285724_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	7.3e-128	81.2
WP_141456652.1\|286912_287679_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_141456736.1\|287763_288429_+	DNA repair protein RadC	A0A1B2LRS6	Wolbachia_phage	6.2e-57	50.9
WP_141456737.1\|289896_290805_+	helix-turn-helix domain-containing protein	A0A1B2LRS2	Wolbachia_phage	8.2e-68	50.5
WP_141456738.1\|290857_291799_+	helix-turn-helix domain-containing protein	A0A1B2LRR7	Wolbachia_phage	1.6e-69	50.6
WP_141456739.1\|291947_292307_-	hypothetical protein	NA	NA	NA	NA
WP_141456740.1\|292450_293365_-	patatin	A0A1B2LRS3	Wolbachia_phage	8.7e-134	76.8
WP_019236453.1\|293373_293595_-	hypothetical protein	A0A1B2LRU2	Wolbachia_phage	4.8e-14	61.6
WP_141456741.1\|293662_294202_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_141456742.1\|294260_295196_-\|tail	phage tail protein	A0A1B2LRT8	Wolbachia_phage	1.4e-134	75.4
WP_141456743.1\|295196_295406_-\|tail	phage tail protein	A0A1B2LRT9	Wolbachia_phage	7.2e-20	63.8
WP_141456744.1\|295408_295756_-\|tail	phage tail protein	A0A1B2LRV9	Wolbachia_phage	2.4e-44	70.4
WP_141456745.1\|295755_298044_-\|tail	phage tail tape measure protein	E9P5Y8	Wolbachia_endosymbiont_wVitA_of_Nasonia_vitripennis_phage	1.4e-196	57.0
WP_141456746.1\|298159_298414_-\|tail	phage tail assembly protein	A0A1B2LRV6	Wolbachia_phage	2.5e-22	69.4
WP_141456747.1\|298448_298958_-\|tail	phage major tail tube protein	A0A1B2LRS4	Wolbachia_phage	8.9e-88	94.0
WP_141457310.1\|299374_299881_-\|tail	phage major tail tube protein	A0A1B2LRS4	Wolbachia_phage	4.9e-86	91.1
WP_141456748.1\|300328_301348_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_141456749.1\|301645_302725_-	ankyrin repeat domain-containing protein	A0A1B2LRR0	Wolbachia_phage	2.1e-155	97.5
WP_141456652.1\|305255_306021_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_141456750.1\|306005_306275_-	ankyrin repeat domain-containing protein	A0A1B2LRP2	Wolbachia_phage	7.9e-27	100.0
WP_007549910.1\|307149_308070_-	patatin	A0A1B2LRS3	Wolbachia_phage	6.3e-132	76.7
WP_012673232.1\|308079_308298_-	hypothetical protein	A0A1B2LRU2	Wolbachia_phage	9.2e-10	55.2
WP_007549904.1\|308422_308959_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_012673233.1\|308924_309905_-\|tail	tail protein	A0A1B2LRT8	Wolbachia_phage	4.2e-94	55.7
WP_012673234.1\|309906_310113_-\|tail	tail protein	A0A1B2LRT9	Wolbachia_phage	1.9e-17	60.9
WP_007550111.1\|310090_310507_-\|tail	phage tail protein	A0A1B2LRV9	Wolbachia_phage	2.2e-23	45.7
WP_012673235.1\|310510_312691_-\|tail	phage tail tape measure protein	Q75QK7	Wolbachia_phage	1.0e-185	79.9
WP_007549241.1\|312803_313055_-\|tail	phage tail assembly protein	Q75QK8	Wolbachia_phage	2.0e-32	90.4
WP_007549243.1\|313071_313572_-\|tail	phage major tail tube protein	Q75QK9	Wolbachia_phage	5.3e-85	94.0
WP_141456751.1\|313593_314745_-\|tail	phage tail protein	A0A1B2LRR3	Wolbachia_phage	4.4e-199	88.5
WP_019236467.1\|314737_315298_-	hypothetical protein	Q75QL3	Wolbachia_phage	4.0e-57	64.9
WP_141456752.1\|315308_316742_-	hypothetical protein	Q75QL4	Wolbachia_phage	4.6e-198	89.7
WP_015589010.1\|316738_316933_-	hypothetical protein	A0A1B2LRW5	Wolbachia_phage	1.6e-21	75.0
WP_141456753.1\|316937_318122_-	hypothetical protein	A0A1B2LRR4	Wolbachia_phage	4.6e-204	90.2
WP_141456754.1\|318126_320064_-	DUF4815 domain-containing protein	Q75QL6	Wolbachia_phage	0.0e+00	94.9
WP_141456755.1\|320079_320763_-	hypothetical protein	A0A1B2LRU4	Wolbachia_phage	2.7e-103	82.4
WP_141456756.1\|320846_322895_-	AAA family ATPase	Q9JMN6	Wolbachia_phage	1.1e-240	74.4
WP_141457312.1\|322912_324151_-	AAA family ATPase	A0A1B2LRQ9	Wolbachia_phage	1.2e-125	58.3
WP_010962695.1\|324147_324648_-	hypothetical protein	A0A1B2LRU0	Wolbachia_phage	1.6e-68	79.6
WP_015589004.1\|324685_325474_-	AAA family ATPase	A0A1B2LRS1	Wolbachia_phage	6.8e-127	84.9
WP_010962699.1\|326401_326896_-	sigma-70 family RNA polymerase sigma factor	A0A1B2LRS7	Wolbachia_phage	3.3e-39	54.0
WP_141456757.1\|327479_327929_+	crossover junction endodeoxyribonuclease RuvC	Q9JMN0	Wolbachia_phage	2.3e-79	96.0
WP_141456758.1\|328032_329256_+	ParB N-terminal domain-containing protein	E9P620	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	3.9e-222	92.9
WP_141456759.1\|329398_331291_+	hypothetical protein	NA	NA	NA	NA
WP_141456760.1\|331474_331957_+	hypothetical protein	Q9JMM9	Wolbachia_phage	4.1e-74	95.5
WP_141456761.1\|331976_333461_+	ankyrin repeat domain-containing protein	F8QZT5	Wolbachia_phage	8.7e-200	87.9
WP_141456762.1\|333457_335284_+\|terminase	phage terminase large subunit family protein	Q9JMM7	Wolbachia_phage	0.0e+00	97.2
WP_019236402.1\|335287_335512_+	hypothetical protein	A0A1B2LRU7	Wolbachia_phage	2.2e-27	82.4
WP_141456763.1\|335512_336919_+\|portal	phage portal protein	Q9JMM5	Wolbachia_phage	3.6e-264	95.9
WP_141457314.1\|336918_337953_+	S49 family peptidase	F8QZT1	Wolbachia_phage	2.2e-178	99.1
WP_047759659.1\|338020_338389_+\|head	head decoration protein	A0A1B2LRT0	Wolbachia_phage	1.0e-48	83.6
WP_019236398.1\|338421_339426_+\|capsid	major capsid protein	Q9JMM2	Wolbachia_phage	3.8e-191	97.3
WP_047759657.1\|341130_341445_+	hypothetical protein	Q9JMM1	Wolbachia_phage	5.0e-41	79.8
WP_141456764.1\|341445_341943_+\|tail	phage tail protein	A0A1B2LRS9	Wolbachia_phage	4.5e-68	84.0
WP_141456765.1\|341939_342413_+	hypothetical protein	A0A1B2LRU9	Wolbachia_phage	1.2e-65	78.4
WP_141456766.1\|342399_342864_+\|plate	phage baseplate assembly protein V	A0A1B2LRU5	Wolbachia_phage	1.1e-71	85.1
WP_141456767.1\|342875_343130_+	hypothetical protein	Q75QM1	Wolbachia_phage	6.1e-13	66.0
WP_167482794.1\|343113_344205_+	DUF1016 family protein	A0A0U2BZN7	Salmonella_phage	9.0e-21	40.1
WP_141457318.1\|344212_344548_+\|plate	baseplate assembly protein W	Q9JML7	Wolbachia_phage	1.7e-50	94.4
WP_141456768.1\|344550_345336_+\|plate	baseplate assembly protein J	A0A1B2LRR9	Wolbachia_phage	1.1e-124	90.5
WP_141456769.1\|345335_346496_+\|tail	phage tail protein	Q9JML5	Wolbachia_phage	7.2e-202	86.7
WP_141456770.1\|346664_347393_+	ankyrin repeat domain-containing protein	A0A1B2LRT4	Wolbachia_phage	3.5e-69	77.1
WP_141456771.1\|347418_347880_+	ankyrin repeat domain-containing protein	Q9JML3	Wolbachia_phage	2.3e-34	73.8
WP_141456772.1\|347884_348322_+	DUF2924 domain-containing protein	Q9JML2	Wolbachia_phage	2.9e-63	87.9
WP_141456773.1\|349869_350586_+	hypothetical protein	NA	NA	NA	NA
WP_167482795.1\|350690_351005_+	hypothetical protein	NA	NA	NA	NA
WP_141456775.1\|351069_353940_-	hypothetical protein	NA	NA	NA	NA
WP_141456776.1\|356644_358096_-	hypothetical protein	NA	NA	NA	NA
WP_141456777.1\|358940_360173_+	hypothetical protein	NA	NA	NA	NA
WP_141456778.1\|360275_373814_+	latrotoxin-related protein	Q9JMP0	Wolbachia_phage	5.0e-294	61.9
WP_141456652.1\|375661_376428_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_019236585.1\|376571_376781_+	hypothetical protein	A0A1B2LRU2	Wolbachia_phage	3.2e-28	95.7
WP_139686866.1\|376781_377303_-	DUF1669 domain-containing protein	A0A1B2LRT6	Wolbachia_phage	9.1e-88	96.0
WP_141456779.1\|377301_378228_+	patatin	A0A1B2LRS3	Wolbachia_phage	1.3e-150	86.5
WP_141456780.1\|378282_379194_-	helix-turn-helix domain-containing protein	A0A1B2LRR7	Wolbachia_phage	8.2e-84	56.4
WP_019236580.1\|379219_380116_-	helix-turn-helix transcriptional regulator	A0A1B2LRS2	Wolbachia_phage	5.2e-83	58.3
WP_141456781.1\|380232_381426_-	hypothetical protein	A0A1B2LRQ6	Wolbachia_phage	1.9e-165	79.0
WP_141456652.1\|385090_385857_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_015588834.1\|387537_388818_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_015588833.1\|388843_389464_-	hypothetical protein	NA	NA	NA	NA
WP_141456782.1\|389661_390210_-	hypothetical protein	NA	NA	NA	NA
WP_141456783.1\|390412_391264_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	3.5e-89	59.9
WP_141456784.1\|391445_393560_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	2.1e-74	43.4
WP_006279515.1\|393560_393839_-	YggT family protein	NA	NA	NA	NA
WP_015588829.1\|394010_394286_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_006279415.1\|394276_394498_-	hypothetical protein	NA	NA	NA	NA
WP_006279412.1\|394703_395141_-	hypothetical protein	NA	NA	NA	NA
WP_015588828.1\|395618_396209_-	CvpA family protein	NA	NA	NA	NA
WP_141456785.1\|396266_396863_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.1e-20	31.1
WP_015588827.1\|397044_398772_-	hypothetical protein	NA	NA	NA	NA
WP_015588826.1\|398918_399962_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	1.1e-31	36.4
WP_015588825.1\|399962_401255_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A0N7G7I9	Chrysochromulina_ericina_virus	3.9e-23	33.9
WP_015588824.1\|405403_405715_+	hypothetical protein	NA	NA	NA	NA
WP_141456652.1\|405742_406509_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_141456786.1\|406959_407736_+	hypothetical protein	NA	NA	NA	NA
WP_010082072.1\|408139_408304_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-06	48.1
WP_010082071.1\|408296_408458_-	hypothetical protein	U5P429	Shigella_phage	8.6e-05	52.2
WP_141456787.1\|408461_408896_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	5.4e-09	35.5
WP_081600753.1\|408880_409183_-\|transposase	transposase	NA	NA	NA	NA
WP_015588819.1\|409649_410048_+	hypothetical protein	NA	NA	NA	NA
WP_015588818.1\|410055_411096_+	Mrp/NBP35 family ATP-binding protein	NA	NA	NA	NA
WP_141456652.1\|411651_412418_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_141456652.1\|413232_413999_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_141456788.1\|414127_415276_+	2-octaprenyl-6-methoxyphenyl hydroxylase	NA	NA	NA	NA
WP_141456652.1\|415536_416302_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_015588815.1\|416573_417536_+\|transposase	IS481-like element ISWpi4 family transposase	NA	NA	NA	NA
WP_015588814.1\|417538_418087_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_010962412.1\|418086_418698_-	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA
WP_141456789.1\|418843_419143_+	ETC complex I subunit	NA	NA	NA	NA
WP_010962410.1\|419779_420091_-	hypothetical protein	NA	NA	NA	NA
WP_015588811.1\|420087_420969_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA
WP_015588810.1\|421189_422437_+	MFS transporter	Q6JIH2	Burkholderia_virus	1.6e-50	31.8
WP_141456790.1\|422464_423247_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_015588808.1\|423396_423798_-	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA
WP_015588807.1\|423839_425078_-	cell division protein FtsA	NA	NA	NA	NA
WP_015588806.1\|425216_425756_+	peptide deformylase	E3SLL2	Synechococcus_phage	4.0e-22	41.8
WP_015588805.1\|425745_426567_+	uracil-DNA glycosylase	A0A127AW33	Bacillus_phage	1.2e-12	30.8
WP_141456791.1\|427236_427443_+	hypothetical protein	NA	NA	NA	NA
WP_006279675.1\|427509_427722_+	hypothetical protein	NA	NA	NA	NA
WP_141456792.1\|427727_429776_+	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA
WP_015588803.1\|429759_430785_+	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA
WP_015588802.1\|430777_431773_+	porphobilinogen synthase	NA	NA	NA	NA
WP_138265045.1\|431919_432678_+	phosphatidylglycerophosphatase	NA	NA	NA	NA
WP_015588800.1\|432722_433562_+\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_141456793.1\|433565_435683_+\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_141456794.1\|435666_437484_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_141456795.1\|437802_438576_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	2.7e-27	34.9
WP_006013840.1\|438704_438872_+	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA
WP_141456796.1\|439038_439695_+	exopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_141456797.1\|439687_441061_+\|tRNA	cysteine--tRNA ligase	A0A1V0SAQ2	Catovirus	8.4e-48	30.3
WP_015588794.1\|441067_441487_+	DedA family protein	NA	NA	NA	NA
WP_167482796.1\|441519_442575_-	hypothetical protein	NA	NA	NA	NA
WP_167482797.1\|442571_443294_-	hypothetical protein	NA	NA	NA	NA
WP_141456652.1\|443376_444142_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_141456800.1\|444139_444898_-	hypothetical protein	NA	NA	NA	NA
WP_141456652.1\|444923_445690_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_141456801.1\|445710_446247_-	hypothetical protein	NA	NA	NA	NA
WP_015588792.1\|446299_447721_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_010082183.1\|449239_449707_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_015588791.1\|449751_450240_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_006279354.1\|450240_451068_-	cytochrome c oxidase subunit 3	NA	NA	NA	NA
WP_141456802.1\|451115_451775_-	TenA family transcriptional regulator	NA	NA	NA	NA
WP_038249063.1\|451819_452503_-	TenA family protein	NA	NA	NA	NA
WP_141456803.1\|452629_453802_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.4e-90	47.8
WP_006279564.1\|453945_454215_-	50S ribosomal protein L27	NA	NA	NA	NA
WP_015588788.1\|454225_454528_-	50S ribosomal protein L21	NA	NA	NA	NA
WP_041573492.1\|454810_455005_+	hypothetical protein	NA	NA	NA	NA
WP_015588787.1\|455589_456168_-	RlmE family RNA methyltransferase	NA	NA	NA	NA
WP_010082598.1\|456244_456820_-	DUF2497 domain-containing protein	NA	NA	NA	NA
WP_006279873.1\|456839_458063_-	TolC family protein	NA	NA	NA	NA
WP_010082596.1\|458192_458651_+	50S ribosomal protein L13	NA	NA	NA	NA
WP_007548415.1\|458661_459117_+	30S ribosomal protein S9	NA	NA	NA	NA
WP_006279876.1\|459263_459575_+	HU family DNA-binding protein	NA	NA	NA	NA
WP_141456804.1\|459567_460275_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_081600753.1\|460411_460714_+\|transposase	transposase	NA	NA	NA	NA
WP_141456787.1\|460698_461133_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	5.4e-09	35.5
WP_010082071.1\|461136_461298_+	hypothetical protein	U5P429	Shigella_phage	8.6e-05	52.2
WP_010082072.1\|461290_461455_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-06	48.1
WP_015588785.1\|461973_462579_-	OmpA-like protein	NA	NA	NA	NA
WP_141456805.1\|462697_465148_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	2.6e-161	38.6
WP_006279879.1\|465160_465757_-	M23 family metallopeptidase	A0A7K9	Microcystis_virus	2.8e-08	35.5
WP_006279880.1\|465802_466129_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_006279881.1\|466128_466434_-	integration host factor subunit alpha	NA	NA	NA	NA
WP_141456806.1\|466494_467682_-	MFS transporter	NA	NA	NA	NA
WP_015588782.1\|468053_469592_-	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	7.9e-55	39.0
WP_015588781.1\|469652_470294_-	dioxygenase	NA	NA	NA	NA
WP_015588780.1\|471942_472890_+\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	2.6e-125	82.4
WP_015588779.1\|473576_474500_+	hypothetical protein	NA	NA	NA	NA
WP_015588778.1\|474726_475845_+	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	5.4e-29	32.9
WP_012673044.1\|476176_477811_+	ribonuclease J	NA	NA	NA	NA
WP_141456807.1\|477816_479079_+	Tol-Pal system protein TolB	NA	NA	NA	NA
WP_015588776.1\|479120_479474_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_015588775.1\|479463_480390_-	ribose-phosphate diphosphokinase	A0A2K9L2G2	Tupanvirus	1.3e-31	30.9
WP_141456808.1\|480693_481560_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
482545:482604	attL	NA	NA	NA	NA
WP_141456652.1\|482616_483382_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_015588772.1\|484909_486181_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_141457322.1\|486215_487493_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.3e-99	50.0
WP_141456652.1\|488565_489331_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_041573518.1\|489464_489749_+\|transposase	transposase	NA	NA	NA	NA
WP_095866567.1\|489770_490112_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	7.2e-09	42.5
WP_167482798.1\|490196_490358_+	hypothetical protein	NA	NA	NA	NA
WP_141456809.1\|490350_490515_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_141456810.1\|491534_493922_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	3.3e-108	34.3
WP_015588836.1\|494138_494747_-	SCO family protein	NA	NA	NA	NA
WP_015588837.1\|494791_495487_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	8.0e-39	37.0
WP_015588838.1\|495504_496155_-	Tim44 domain-containing protein	NA	NA	NA	NA
WP_006279761.1\|496319_496823_+	protein-export chaperone SecB	NA	NA	NA	NA
WP_141456811.1\|496837_499423_+	aconitate hydratase AcnA	NA	NA	NA	NA
WP_015588840.1\|499557_502698_+	bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA	NA	NA	NA	NA
WP_006279756.1\|504249_504594_-	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_010082606.1\|504610_504925_-	hypothetical protein	NA	NA	NA	NA
WP_010082605.1\|505024_506131_-	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	4.2e-42	33.9
WP_015588843.1\|506905_507664_-	FtsQ-type POTRA domain-containing protein	NA	NA	NA	NA
WP_141456812.1\|507644_508598_-	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_015588845.1\|508687_509473_-	hypothetical protein	NA	NA	NA	NA
WP_141456813.1\|509666_510041_-	DUF3470 domain-containing protein	NA	NA	NA	NA
WP_015588847.1\|510102_511191_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	2.6e-28	35.3
WP_015588848.1\|511414_512143_-	triosephosphate isomerase	NA	NA	NA	NA
WP_015588849.1\|512318_513131_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_065095043.1\|513247_514741_+	IMP dehydrogenase	A0A0N9Q9A5	Chrysochromulina_ericina_virus	9.7e-42	41.5
WP_080717647.1\|515532_515703_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	U5P429	Shigella_phage	4.7e-09	54.5
WP_015588851.1\|515950_517459_+	protein translocase subunit SecD	NA	NA	NA	NA
WP_015588852.1\|517455_518241_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_141456652.1\|518887_519654_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_141456814.1\|520206_521379_+	porin	NA	NA	NA	NA
519667:520527	attR	NA	NA	NA	NA
WP_084741701.1\|521549_521843_+\|transposase	transposase	NA	NA	NA	NA
WP_141456815.1\|521956_522262_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_010082071.1\|522265_522427_+	hypothetical protein	U5P429	Shigella_phage	8.6e-05	52.2
WP_010082072.1\|522419_522584_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-06	48.1

DBSCAN-SWA_5

637981 : 740744

Wolbachia_phage(22.22%)

integrase,tRNA,protease,transposase

attL 680738:680781|attR 681845:681888

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141456652.1\|637981_638747_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_010962461.1\|639092_640256_+	multidrug effflux MFS transporter	S4TR35	Salmonella_phage	4.8e-20	26.1
WP_015588867.1\|640283_641363_-	peptide chain release factor 1	NA	NA	NA	NA
WP_015588868.1\|641461_642055_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_015588869.1\|642059_642971_+	acetylglutamate kinase	NA	NA	NA	NA
WP_141457335.1\|643119_643188_+	hypothetical protein	NA	NA	NA	NA
WP_141456865.1\|643363_643825_+	dUTP diphosphatase	V5L6Y7	Insectomime_virus	5.5e-36	55.1
WP_015588871.1\|643903_644542_+	hypothetical protein	NA	NA	NA	NA
WP_015588872.1\|644660_645143_-	transcription antitermination factor NusB	NA	NA	NA	NA
WP_015588873.1\|645142_645571_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	7.9e-13	35.0
WP_015588874.1\|645548_647258_-	membrane protein insertase YidC	NA	NA	NA	NA
WP_141456867.1\|647392_647896_+\|protease	TIGR02281 family clan AA aspartic protease	NA	NA	NA	NA
WP_141456869.1\|647902_648778_-	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	3.0e-43	40.0
WP_141456871.1\|651213_653166_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA
WP_015588878.1\|653478_654720_+	hypothetical protein	NA	NA	NA	NA
WP_141456873.1\|654834_656160_+	dihydroorotase	NA	NA	NA	NA
WP_015588880.1\|656358_657543_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_015588881.1\|657546_658143_+	orotate phosphoribosyltransferase	NA	NA	NA	NA
WP_015588882.1\|658240_660070_+	translational GTPase TypA	E4ZFJ7	Streptococcus_phage	8.0e-22	40.8
WP_141456652.1\|660416_661183_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_141457338.1\|662201_664763_+	ATP-dependent chaperone ClpB	A0A223W0B1	Agrobacterium_phage	2.4e-120	33.7
WP_141456875.1\|664790_669542_+	NAD-glutamate dehydrogenase	NA	NA	NA	NA
WP_010082258.1\|669546_669843_+	hypothetical protein	NA	NA	NA	NA
WP_015588886.1\|669814_671197_+	PleD family two-component system response regulator	G3MA91	Bacillus_virus	2.6e-20	33.5
WP_141456877.1\|672012_672735_-	DNA repair protein RecO	NA	NA	NA	NA
WP_007548499.1\|672718_672865_-	hypothetical protein	NA	NA	NA	NA
WP_015588888.1\|674136_674757_+	hypothetical protein	NA	NA	NA	NA
WP_006279908.1\|674961_675300_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_006280119.1\|675431_676421_+	ribonucleotide-diphosphate reductase subunit beta	A0A1B1IW95	uncultured_Mediterranean_phage	6.6e-103	54.5
WP_015588889.1\|676559_677690_+	cation:dicarboxylase symporter family transporter	NA	NA	NA	NA
WP_141456879.1\|677689_678274_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_141456881.1\|678268_678892_-	hypothetical protein	NA	NA	NA	NA
WP_141456652.1\|679006_679773_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_041573502.1\|680026_680737_+	hypothetical protein	NA	NA	NA	NA
680738:680781	attL	NA	NA	NA	NA
WP_080717647.1\|681537_681708_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	U5P429	Shigella_phage	4.7e-09	54.5
WP_141456883.1\|681964_683296_+	DNA recombination protein RmuC	NA	NA	NA	NA
681845:681888	attR	NA	NA	NA	NA
WP_141457339.1\|683332_684661_-\|transposase	IS4-like element ISWosp9 family transposase	NA	NA	NA	NA
WP_141456885.1\|684758_685349_+	hypothetical protein	NA	NA	NA	NA
WP_141456887.1\|685435_685897_+	hypothetical protein	NA	NA	NA	NA
WP_015589069.1\|685990_687697_+\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_141456809.1\|687855_688020_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_167482798.1\|688012_688174_-	hypothetical protein	NA	NA	NA	NA
WP_095866555.1\|688258_688612_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.3e-08	42.5
WP_038198869.1\|688613_688898_-\|transposase	transposase	NA	NA	NA	NA
WP_010962676.1\|689267_690440_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA
WP_015589068.1\|690715_691894_+	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_141456889.1\|691982_693266_+	DUF21 domain-containing protein	NA	NA	NA	NA
WP_010082293.1\|693279_693546_+	DUF2312 domain-containing protein	B0VK10	Azospirillum_phage	1.7e-10	40.7
WP_006280027.1\|693538_694114_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_141456891.1\|694097_694985_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	3.9e-38	39.5
WP_041573519.1\|695360_695672_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_015588908.1\|696891_697980_+\|transposase	IS481-like element ISWpi2 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	4.6e-174	81.8
WP_167482799.1\|698089_699025_-	hypothetical protein	Q9JML0	Wolbachia_phage	1.4e-70	49.0
WP_141456895.1\|699901_701173_-	hypothetical protein	NA	NA	NA	NA
WP_141456897.1\|701154_702879_-	hypothetical protein	NA	NA	NA	NA
WP_167482800.1\|703596_704871_+	hypothetical protein	NA	NA	NA	NA
WP_141456901.1\|704903_715838_+	latrotoxin-related protein	Q9JMK9	Wolbachia_phage	5.5e-17	31.5
WP_141456903.1\|716158_717088_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	1.2e-85	59.5
WP_141456904.1\|717217_718129_+	helix-turn-helix domain-containing protein	A0A1B2LRR8	Wolbachia_phage	2.4e-83	61.7
WP_141456907.1\|718298_718955_+	DNA repair protein RadC	A0A1B2LRS6	Wolbachia_phage	6.6e-67	59.1
WP_141456909.1\|719634_720603_+\|transposase	transposase	NA	NA	NA	NA
WP_141456911.1\|721800_722718_+	helix-turn-helix domain-containing protein	E9P5Z7	Wolbachia_endosymbiont_wVitA_of_Nasonia_vitripennis_phage	5.5e-88	58.0
WP_141456913.1\|722767_723661_+	helix-turn-helix domain-containing protein	A0A1B2LRR7	Wolbachia_phage	1.1e-85	58.7
WP_141456652.1\|723891_724657_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_015589162.1\|724905_725988_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	4.0e-53	38.2
WP_065106726.1\|725987_727187_-	deoxyguanosinetriphosphate triphosphohydrolase	NA	NA	NA	NA
WP_141456915.1\|727234_727696_+	heme biosynthesis protein HemY	A0A2H4N7M3	Lake_Baikal_phage	3.8e-13	36.8
WP_015589159.1\|727735_728410_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.1e-29	37.2
WP_015589158.1\|728431_728596_-	lipoprotein	NA	NA	NA	NA
WP_141456918.1\|728648_729347_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_141456920.1\|729502_730639_+	aminotransferase class V-fold PLP-dependent enzyme	A0A1X6WFP1	Pacmanvirus	1.9e-29	28.4
WP_010081987.1\|731552_732290_+	hypothetical protein	NA	NA	NA	NA
WP_022626335.1\|732408_732573_+	hypothetical protein	NA	NA	NA	NA
WP_015589155.1\|732729_733737_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	3.2e-65	40.5
WP_051062213.1\|734943_735459_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_051062211.1\|735448_735700_-	hypothetical protein	NA	NA	NA	NA
WP_015589154.1\|736221_736650_-	hypothetical protein	NA	NA	NA	NA
WP_141456922.1\|738397_739786_+	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	4.2e-47	30.1
WP_015589151.1\|739892_740744_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	6.2e-126	80.6

DBSCAN-SWA_6

768251 : 808431

Bacillus_phage(18.18%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012673175.1\|768251_769532_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_007550269.1\|769559_769895_-	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_015589136.1\|769990_770725_-	3-oxoacyl-[acyl-carrier-protein] reductase	F2NZ40	Diadromus_pulchellus_ascovirus	1.1e-11	26.1
WP_141457341.1\|770994_772512_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_041573518.1\|772654_772939_+\|transposase	transposase	NA	NA	NA	NA
WP_141457343.1\|772960_773302_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	4.2e-09	42.7
WP_141456935.1\|773386_773569_+	hypothetical protein	NA	NA	NA	NA
WP_141456652.1\|773589_774355_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_141456937.1\|774352_775309_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_015589133.1\|775520_776369_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_141456939.1\|777001_778915_+	hypothetical protein	NA	NA	NA	NA
WP_141456941.1\|779155_781351_+	hypothetical protein	A0A2H4X2Q6	Flamingopox_virus	7.4e-06	24.6
WP_015589130.1\|782159_782645_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_141457345.1\|782823_783711_+	hypothetical protein	NA	NA	NA	NA
WP_015589128.1\|783699_784611_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	9.2e-128	81.4
WP_141456943.1\|785190_785475_+\|transposase	transposase	NA	NA	NA	NA
WP_095866555.1\|785476_785830_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.3e-08	42.5
WP_167482801.1\|785914_786079_+	hypothetical protein	NA	NA	NA	NA
WP_081600772.1\|786068_786233_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_015589127.1\|787468_788233_+	cytochrome c oxidase subunit II	NA	NA	NA	NA
WP_141456945.1\|788248_789799_+	cytochrome c oxidase subunit I	R9VX24	Flavobacterium_phage	4.1e-11	35.0
WP_015589125.1\|789800_790688_+	protoheme IX farnesyltransferase	NA	NA	NA	NA
WP_015589124.1\|790864_791302_+	ribonuclease HI	J9Q745	Salmonella_phage	7.8e-32	43.4
WP_141456947.1\|791294_794420_+	DUF3971 domain-containing protein	NA	NA	NA	NA
WP_051062209.1\|794714_795122_-\|transposase	transposase	NA	NA	NA	NA
WP_010082383.1\|795141_795342_-	hypothetical protein	NA	NA	NA	NA
WP_141456949.1\|795846_797805_-	hypothetical protein	NA	NA	NA	NA
WP_141456652.1\|798077_798843_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_153296805.1\|799359_799527_+	hypothetical protein	NA	NA	NA	NA
WP_051062205.1\|799975_800281_+\|transposase	transposase	Q75QL1	Wolbachia_phage	1.1e-13	46.2
WP_015589121.1\|800356_801730_+	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	2.5e-44	28.6
WP_006279962.1\|801735_802128_-	hypothetical protein	NA	NA	NA	NA
WP_015589119.1\|802197_803229_+	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA
WP_015589118.1\|803213_804143_-	glutathione synthase	NA	NA	NA	NA
WP_006279461.1\|804203_804800_-	BON domain-containing protein	NA	NA	NA	NA
WP_015589117.1\|805181_806516_+	trigger factor	NA	NA	NA	NA
WP_006280254.1\|806527_807154_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	5.7e-60	60.9
WP_006279985.1\|807153_808431_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.6e-109	51.9

DBSCAN-SWA_7

814964 : 870290

Bacillus_phage(18.75%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141456652.1\|814964_815731_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_010962536.1\|815855_816656_-	metal ABC transporter permease	NA	NA	NA	NA
WP_015589089.1\|816657_817014_-	membrane protein	NA	NA	NA	NA
WP_015589090.1\|817017_817884_-	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_141456955.1\|817965_821226_+	UvrD-helicase domain-containing protein	G3MA40	Bacillus_virus	2.7e-12	24.6
WP_141457347.1\|821480_821576_+	hypothetical protein	NA	NA	NA	NA
WP_141456652.1\|822239_823006_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_167482791.1\|823026_823164_-	hypothetical protein	NA	NA	NA	NA
WP_141456957.1\|823508_824105_-	RDD family protein	NA	NA	NA	NA
WP_141456959.1\|824326_825778_+	replicative DNA helicase	A0A218KST2	Xenohaliotis_phage	2.3e-72	37.6
WP_041573589.1\|826475_827348_+	hypothetical protein	NA	NA	NA	NA
WP_015589097.1\|827421_829059_-\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	7.1e-94	36.0
WP_010082521.1\|829198_829639_+	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_015589098.1\|829650_830826_-	multifunctional ribose 5-phosphate isomerase B/3-demethylubiquinone-9 3-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	A0A1B1IVA4	uncultured_Mediterranean_phage	5.2e-06	28.3
WP_080717604.1\|831060_831117_+	hypothetical protein	NA	NA	NA	NA
WP_015589099.1\|831726_833475_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.9e-61	33.9
WP_006280480.1\|833712_834795_+	Fic family protein	A0A1V0E025	Clostridioides_phage	4.6e-09	26.5
WP_141456961.1\|835004_836093_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_081600772.1\|836193_836358_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_167482801.1\|836347_836512_-	hypothetical protein	NA	NA	NA	NA
WP_095866555.1\|836596_836950_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.3e-08	42.5
WP_141456963.1\|836951_837236_-\|transposase	transposase	NA	NA	NA	NA
WP_015589100.1\|837523_837838_-	septum formation initiator family protein	NA	NA	NA	NA
WP_006279631.1\|837887_838016_-	50S ribosomal protein L36	NA	NA	NA	NA
WP_141456965.1\|838065_838896_-	pyruvate, phosphate dikinase/phosphoenolpyruvate synthase regulator	NA	NA	NA	NA
WP_015589102.1\|839031_839742_+	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA
WP_015589103.1\|839768_840095_+	hypothetical protein	NA	NA	NA	NA
WP_141456967.1\|840048_841644_-	hypothetical protein	A0A1B2LRR2	Wolbachia_phage	1.6e-98	57.8
WP_015589105.1\|841824_843102_+	adenylosuccinate synthase	A0A2L2DKW2	Acanthamoeba_polyphaga_mimivirus	9.2e-57	32.5
WP_141456652.1\|844126_844892_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_141456969.1\|845039_847526_+	hypothetical protein	NA	NA	NA	NA
WP_007550159.1\|847638_847902_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_141456971.1\|847879_848476_+	septum formation protein Maf	NA	NA	NA	NA
WP_141456652.1\|848819_849586_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_141456652.1\|851496_852262_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_141456973.1\|853200_854544_-	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_007552972.1\|855001_855271_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_007549647.1\|855390_855717_+\|transposase	transposase	NA	NA	NA	NA
WP_081600779.1\|855655_855946_+\|transposase	transposase	NA	NA	NA	NA
WP_015589109.1\|856102_856606_-	hypothetical protein	NA	NA	NA	NA
WP_141456977.1\|857279_858929_-	chaperonin GroEL	A0A240F779	uncultured_virus	2.9e-127	47.5
WP_007549140.1\|859029_859320_-	co-chaperone GroES	A0A221S331	uncultured_virus	1.0e-08	35.6
WP_015589111.1\|859497_860304_+	folate-binding protein YgfZ	NA	NA	NA	NA
WP_010962506.1\|861211_862951_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.6e-64	31.6
WP_141456652.1\|863124_863890_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_141456652.1\|863978_864744_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_010082539.1\|864839_865019_+	hypothetical protein	NA	NA	NA	NA
WP_141456979.1\|865024_866017_+	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_015589087.1\|866186_867221_+	Fic family protein	NA	NA	NA	NA
WP_153801318.1\|867304_867481_+	hypothetical protein	NA	NA	NA	NA
WP_010962542.1\|867627_868413_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_006280935.1\|868409_869168_+	phosphate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.1e-20	33.3
WP_081600753.1\|869246_869549_+\|transposase	transposase	NA	NA	NA	NA
WP_141456787.1\|869533_869968_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	5.4e-09	35.5
WP_010082071.1\|869971_870133_+	hypothetical protein	U5P429	Shigella_phage	8.6e-05	52.2
WP_010082072.1\|870125_870290_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-06	48.1

DBSCAN-SWA_8

958315 : 1132395

153

Wolbachia_phage(76.67%)

tRNA,head,transposase,capsid,plate,tail,portal,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_044471264.1\|958315_958597_+\|transposase	transposase	NA	NA	NA	NA
WP_022626339.1\|958978_959230_+	hypothetical protein	NA	NA	NA	NA
WP_141457018.1\|959454_960261_-	DUF2163 domain-containing protein	Q5DN21	Alphaproteobacteria_virus	1.2e-09	37.8
WP_141457020.1\|960697_962677_-	porin	NA	NA	NA	NA
WP_015589180.1\|962884_963706_-	3'-5' exonuclease	NA	NA	NA	NA
WP_010082484.1\|963698_964583_-	GTPase Era	NA	NA	NA	NA
WP_015589177.1\|964833_965856_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_006280502.1\|965848_967255_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_141457023.1\|968198_968819_+	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	1.4e-34	39.1
WP_010962800.1\|968815_970087_+	insulinase family protein	G3MBJ8	Bacillus_virus	7.5e-51	33.4
WP_015589173.1\|972423_973641_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.5e-77	40.3
WP_010962799.1\|973641_974142_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA
WP_015589172.1\|974366_976382_+	hypothetical protein	NA	NA	NA	NA
WP_006280099.1\|976940_977711_-	response regulator transcription factor	A0A0K0PVG9	Roseobacter_phage	1.2e-11	46.1
WP_006280098.1\|978036_979020_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_141457025.1\|979039_979522_+	phosphatidylglycerophosphatase A	NA	NA	NA	NA
WP_006280097.1\|979511_980291_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_010962793.1\|980333_981470_+	hypothetical protein	NA	NA	NA	NA
WP_010082472.1\|981473_982262_-	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA
WP_010082473.1\|982348_982801_-	rRNA maturation RNase YbeY	NA	NA	NA	NA
WP_080717624.1\|982794_983163_-	hypothetical protein	NA	NA	NA	NA
WP_007549395.1\|983185_983584_-	EVE domain-containing protein	NA	NA	NA	NA
WP_010962790.1\|983583_984780_-	cell division protein FtsZ	NA	NA	NA	NA
WP_141457027.1\|985018_985483_-	hypothetical protein	NA	NA	NA	NA
WP_141457029.1\|986959_988591_-	recombinase family protein	A0A1B2LRQ3	Wolbachia_phage	1.4e-137	50.1
WP_141457033.1\|988932_990129_+	hypothetical protein	Q9JMN1	Wolbachia_phage	5.1e-150	64.1
WP_141457035.1\|990094_991204_+	hypothetical protein	Q9JMN2	Wolbachia_phage	7.5e-132	61.5
WP_141457037.1\|991216_993238_-	AAA family ATPase	Q9JMN6	Wolbachia_phage	3.2e-253	76.0
WP_012673264.1\|993261_994488_-	AAA family ATPase	A0A1B2LRQ9	Wolbachia_phage	7.5e-141	63.0
WP_007549622.1\|994484_994985_-	hypothetical protein	A0A1B2LRU0	Wolbachia_phage	5.7e-71	83.2
WP_007549624.1\|995008_995806_-	ATP-binding protein	E9P631	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.5e-129	84.4
WP_012673265.1\|995857_996349_-	sigma-70 family RNA polymerase sigma factor	A0A1B2LRS7	Wolbachia_phage	2.5e-31	48.7
WP_007549851.1\|997232_997703_+	hypothetical protein	E9P621	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	2.8e-64	76.1
WP_007549853.1\|997847_998318_+	hypothetical protein	A0A1B2LRT3	Wolbachia_phage	3.1e-63	85.9
WP_044471254.1\|998337_999801_+	ankyrin repeat domain-containing protein	A0A1B2LRQ4	Wolbachia_phage	2.6e-204	88.6
WP_041582652.1\|999800_1001633_+\|terminase	phage terminase large subunit family protein	Q9JMM7	Wolbachia_phage	0.0e+00	96.4
WP_007549008.1\|1001634_1001859_+	hypothetical protein	A0A1B2LRU7	Wolbachia_phage	9.1e-29	89.2
WP_039963965.1\|1001885_1002917_+	DUF1016 domain-containing protein	Q9JMP5	Wolbachia_phage	7.5e-150	74.6
WP_007549005.1\|1002916_1004338_+\|portal	phage portal protein	Q75QM9	Wolbachia_phage	3.3e-265	95.4
WP_141457038.1\|1004334_1005372_+	S49 family peptidase	Q75QM8	Wolbachia_phage	6.7e-167	90.0
WP_007549003.1\|1005439_1005811_+\|head	head decoration protein	Q9JMM3	Wolbachia_phage	2.3e-53	88.6
WP_141457040.1\|1005836_1006529_+\|capsid	major capsid protein	Q9JMM2	Wolbachia_phage	3.0e-110	65.1
WP_012673243.1\|1006612_1006933_+	hypothetical protein	Q9JMM1	Wolbachia_phage	8.2e-39	78.4
WP_006280854.1\|1006925_1007423_+\|tail	tail protein	Q75QM4	Wolbachia_phage	3.7e-78	95.8
WP_006280893.1\|1007403_1007877_+	hypothetical protein	Q75QM3	Wolbachia_phage	2.3e-85	99.4
WP_007548997.1\|1007863_1008319_+\|plate	phage baseplate assembly protein V	Q75QM2	Wolbachia_phage	6.5e-74	92.7
WP_007548996.1\|1008327_1008582_+	hypothetical protein	Q75QM1	Wolbachia_phage	3.3e-19	89.6
WP_015588498.1\|1008587_1008923_+\|plate	baseplate assembly protein	Q75QM0	Wolbachia_phage	9.4e-54	95.5
WP_141457042.1\|1008932_1009730_+\|plate	baseplate assembly protein J	Q75QL9	Wolbachia_phage	3.3e-137	95.1
WP_012673240.1\|1009736_1010954_+	hypothetical protein	A0A1B2LRQ8	Wolbachia_phage	1.1e-144	62.6
WP_141457044.1\|1010974_1011661_+	hypothetical protein	Q75QL7	Wolbachia_phage	7.2e-117	92.1
WP_141456754.1\|1011676_1013614_+	DUF4815 domain-containing protein	Q75QL6	Wolbachia_phage	0.0e+00	94.9
WP_141457046.1\|1013618_1014803_+	hypothetical protein	A0A1B2LRR4	Wolbachia_phage	6.4e-206	90.5
WP_141457048.1\|1014807_1015002_+	hypothetical protein	A0A1B2LRW5	Wolbachia_phage	2.7e-21	75.0
WP_141457050.1\|1014998_1016465_+	hypothetical protein	Q75QL4	Wolbachia_phage	5.6e-167	79.7
WP_012673237.1\|1016479_1017040_+	hypothetical protein	Q75QL3	Wolbachia_phage	4.0e-41	60.4
WP_141457052.1\|1017032_1018187_+\|tail	phage tail protein	A0A1B2LRR3	Wolbachia_phage	2.0e-196	87.3
WP_141456748.1\|1018324_1019344_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_141457310.1\|1019791_1020298_+\|tail	phage major tail tube protein	A0A1B2LRS4	Wolbachia_phage	4.9e-86	91.1
WP_141457054.1\|1020918_1022322_+	hypothetical protein	A0A1B2LRP8	Wolbachia_phage	2.4e-239	92.2
WP_141456652.1\|1022328_1023095_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_141457056.1\|1023284_1029197_+	tetratricopeptide repeat protein	A0A1B2LRP8	Wolbachia_phage	3.0e-227	89.2
WP_141457058.1\|1029317_1030058_+	NTP transferase domain-containing protein	A0A2K9L4K9	Tupanvirus	1.7e-15	31.0
WP_141457060.1\|1030182_1031136_+	NAD-dependent epimerase/dehydratase family protein	E3T4Y8	Cafeteria_roenbergensis_virus	1.2e-16	27.0
WP_141457062.1\|1031092_1033420_+	glycosyltransferase	NA	NA	NA	NA
WP_141457064.1\|1033380_1035057_+	hypothetical protein	NA	NA	NA	NA
WP_141457356.1\|1035061_1036051_+	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA
WP_141457066.1\|1036051_1037827_+	ATP-binding cassette domain-containing protein	A0A1V0SE00	Indivirus	2.1e-30	34.6
WP_141457358.1\|1037828_1038878_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_141457068.1\|1038874_1039918_+	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_141457070.1\|1040058_1041204_+	MFS transporter	NA	NA	NA	NA
WP_141457071.1\|1041221_1042529_-	nucleotide sugar dehydrogenase	A0A127AXI2	Bacillus_phage	1.9e-70	34.7
WP_141457073.1\|1042576_1043476_-	EamA family transporter	NA	NA	NA	NA
WP_141457075.1\|1043884_1045357_+	hypothetical protein	NA	NA	NA	NA
WP_141457077.1\|1045365_1047456_+	hypothetical protein	NA	NA	NA	NA
WP_141456652.1\|1048683_1049449_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_141457360.1\|1050201_1050414_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_141456652.1\|1050535_1051302_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_141457079.1\|1052066_1052438_-	helix-turn-helix domain-containing protein	A0A1B2LRS2	Wolbachia_phage	5.4e-10	30.0
WP_041582615.1\|1052472_1052805_-	helix-turn-helix transcriptional regulator	A0A1B2LRS2	Wolbachia_phage	6.8e-12	41.4
WP_141457081.1\|1052908_1053568_-	DNA repair protein RadC	A0A1B2LRS6	Wolbachia_phage	2.1e-44	42.5
WP_015589168.1\|1053897_1054737_+	polysaccharide deacetylase family protein	A0A2I2L4G0	Orpheovirus	8.3e-06	26.7
WP_015589167.1\|1054691_1056266_+	penicillin-binding protein	NA	NA	NA	NA
WP_141457085.1\|1057191_1058643_+\|terminase	phage terminase large subunit	A0A0N9RQZ8	Pseudomonas_phage	6.5e-59	31.5
WP_015589166.1\|1058883_1059933_-	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_041573529.1\|1060034_1060406_+	hypothetical protein	NA	NA	NA	NA
WP_010962783.1\|1060406_1060691_+	DUF2610 domain-containing protein	NA	NA	NA	NA
WP_015589164.1\|1060697_1061528_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_010962781.1\|1061601_1062030_+	hypothetical protein	NA	NA	NA	NA
WP_141457087.1\|1062132_1062813_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_141456652.1\|1064247_1065013_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_012482040.1\|1065611_1067360_-	AAA family ATPase	A0A1B2LRS1	Wolbachia_phage	1.8e-71	50.2
WP_007301871.1\|1067402_1067903_-	hypothetical protein	A0A1B2LRU0	Wolbachia_phage	4.8e-70	81.5
WP_141457089.1\|1067942_1068749_-	AAA family ATPase	A0A1B2LRS1	Wolbachia_phage	2.6e-126	83.6
WP_141457091.1\|1068765_1069590_-	AAA family ATPase	E9P631	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	4.9e-128	83.2
WP_007301868.1\|1069650_1070175_-	sigma-70 family RNA polymerase sigma factor	A0A1B2LRS7	Wolbachia_phage	1.7e-25	38.0
WP_141457093.1\|1071536_1073696_-	AAA family ATPase	Q9JMN6	Wolbachia_phage	1.3e-257	78.3
WP_141457095.1\|1073914_1074391_+	Holliday junction resolvase	E9P621	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.2e-70	84.3
WP_141457097.1\|1074505_1075726_+	ParB N-terminal domain-containing protein	E9P620	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.4e-227	94.1
WP_141457100.1\|1075754_1076237_+	hypothetical protein	A0A1B2LRT3	Wolbachia_phage	2.5e-68	92.3
WP_141457102.1\|1076256_1077741_+	ankyrin repeat domain-containing protein	F8QZT5	Wolbachia_phage	3.9e-200	89.7
WP_141457104.1\|1077737_1079564_+\|terminase	phage terminase large subunit family protein	Q9JMP6	Wolbachia_phage	0.0e+00	95.9
WP_141457106.1\|1079567_1079801_+	hypothetical protein	A0A1B2LRU7	Wolbachia_phage	2.0e-26	84.9
WP_007302904.1\|1079840_1080128_+	hypothetical protein	NA	NA	NA	NA
WP_127463629.1\|1080143_1080419_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_141457108.1\|1080547_1081957_+\|portal	phage portal protein	A0A1B2LRR5	Wolbachia_phage	1.1e-257	92.6
WP_141457110.1\|1081956_1082988_+	S49 family peptidase	A0A1B2LRQ7	Wolbachia_phage	3.2e-161	87.4
WP_141457362.1\|1083130_1083502_+\|head	head decoration protein	Q9JMM3	Wolbachia_phage	5.7e-52	88.5
WP_141457112.1\|1083506_1084511_+\|capsid	major capsid protein	Q9JMM2	Wolbachia_phage	5.7e-179	91.6
WP_141457114.1\|1084635_1084941_+	hypothetical protein	Q9JMM1	Wolbachia_phage	2.4e-40	76.2
WP_141457116.1\|1085439_1086753_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	2.1e-32	29.7
WP_141457118.1\|1086871_1087369_+\|tail	phage tail protein	A0A1B2LRS9	Wolbachia_phage	5.5e-58	71.0
WP_141456718.1\|1087365_1087839_+	hypothetical protein	A0A1B2LRU9	Wolbachia_phage	6.0e-62	73.9
WP_141456719.1\|1087825_1088290_+\|plate	phage baseplate assembly protein V	A0A1B2LRU5	Wolbachia_phage	1.2e-67	79.2
WP_065095513.1\|1088295_1088550_+	hypothetical protein	A0A1B2LRW2	Wolbachia_phage	1.5e-19	97.8
WP_141456720.1\|1088571_1088907_+\|plate	baseplate assembly protein W	E9P610	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	7.5e-43	80.2
WP_141456721.1\|1088909_1089710_+\|plate	baseplate assembly protein J	A0A1B2LRR9	Wolbachia_phage	6.2e-120	86.7
WP_141456722.1\|1089988_1091155_+\|tail	phage tail protein	Q9JML5	Wolbachia_phage	1.3e-203	85.9
WP_141456723.1\|1091323_1092034_+	ankyrin repeat domain-containing protein	A0A1B2LRT4	Wolbachia_phage	6.4e-84	87.9
WP_141456724.1\|1092072_1092534_+	ankyrin repeat domain-containing protein	A0A1B2LRV4	Wolbachia_phage	9.1e-23	85.4
WP_141456725.1\|1092538_1092979_+	DUF2924 domain-containing protein	Q9JML2	Wolbachia_phage	1.4e-65	89.4
WP_141456726.1\|1092971_1094462_+	recombinase family protein	Q9JML1	Wolbachia_phage	3.3e-255	90.1
WP_141456727.1\|1094528_1095539_+	hypothetical protein	NA	NA	NA	NA
WP_141456728.1\|1095656_1095869_-	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_141456729.1\|1096253_1097336_-	hypothetical protein	A0A1B2LRR2	Wolbachia_phage	2.0e-153	75.7
WP_141456730.1\|1097533_1097989_-	Hsp20 family protein	A0A1B2LRT2	Wolbachia_phage	1.7e-74	92.7
WP_141456731.1\|1099434_1101693_-	hypothetical protein	Q9JML0	Wolbachia_phage	1.8e-15	25.4
WP_141456732.1\|1102072_1102729_+	exopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_141457120.1\|1103269_1103623_+	hypothetical protein	NA	NA	NA	NA
WP_167482806.1\|1103680_1104526_+	hypothetical protein	NA	NA	NA	NA
WP_141457124.1\|1104547_1105993_+	hypothetical protein	NA	NA	NA	NA
WP_141457126.1\|1105995_1113003_+	hypothetical protein	Q9JMP0	Wolbachia_phage	1.5e-36	32.8
WP_141457128.1\|1112962_1113910_+	hypothetical protein	NA	NA	NA	NA
WP_141457129.1\|1113915_1114620_-	hypothetical protein	A0A218ML89	uncultured_virus	1.5e-21	40.4
WP_141457131.1\|1114640_1115585_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	4.0e-126	80.2
WP_141457133.1\|1116206_1117187_+	helix-turn-helix domain-containing protein	A0A1B2LRR8	Wolbachia_phage	8.4e-18	37.3
WP_141457135.1\|1117195_1117303_-	hypothetical protein	NA	NA	NA	NA
WP_081600771.1\|1117417_1117582_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_167482801.1\|1117571_1117736_-	hypothetical protein	NA	NA	NA	NA
WP_095866567.1\|1117820_1118162_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	7.2e-09	42.5
WP_041573518.1\|1118183_1118468_-\|transposase	transposase	NA	NA	NA	NA
WP_006280029.1\|1118666_1118852_+	hypothetical protein	NA	NA	NA	NA
WP_041573517.1\|1118832_1119174_+	hypothetical protein	A0A1B2LRQ3	Wolbachia_phage	3.8e-10	52.2
WP_015589064.1\|1119213_1119855_+	fructose-6-phosphate aldolase	I3ULK3	Synechococcus_phage	1.5e-44	45.2
WP_141457136.1\|1120191_1120923_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_141457138.1\|1120926_1123587_-	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_167482807.1\|1123806_1126893_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_141457140.1\|1126879_1127056_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_015589060.1\|1127094_1128267_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA
WP_141457143.1\|1129303_1130182_+	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_141457145.1\|1130172_1131060_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
WP_070356842.1\|1131156_1131348_+	hypothetical protein	NA	NA	NA	NA
WP_141457147.1\|1131462_1132395_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	1.1e-88	63.6

DBSCAN-SWA_9

1216895 : 1274093

Tupanvirus(10.0%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_141456652.1\|1216895_1217661_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_141457195.1\|1218447_1219203_-	hypothetical protein	NA	NA	NA	NA
WP_015588959.1\|1219819_1221616_-	elongation factor 4	A0A2K9L2P9	Tupanvirus	9.7e-20	41.5
WP_015588958.1\|1221695_1223099_-	malonyl-CoA decarboxylase	NA	NA	NA	NA
WP_081600764.1\|1224100_1224736_-\|transposase	transposase	NA	NA	NA	NA
WP_141456678.1\|1224719_1225049_-\|transposase	transposase	NA	NA	NA	NA
WP_010962623.1\|1225423_1226116_-	thiamine diphosphokinase	NA	NA	NA	NA
WP_006280002.1\|1226096_1226372_-	hypothetical protein	NA	NA	NA	NA
WP_141457374.1\|1226539_1227385_-	SPFH domain-containing protein	NA	NA	NA	NA
WP_015588956.1\|1227392_1228331_-	M23 family metallopeptidase	A0A292GJG6	Xanthomonas_phage	3.7e-23	47.8
WP_015588955.1\|1228327_1229068_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_015588954.1\|1229128_1229836_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_015588952.1\|1230956_1231499_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_015588951.1\|1231633_1232956_+	NADP-dependent malic enzyme	NA	NA	NA	NA
WP_080717615.1\|1232970_1233843_-	P44/Msp2 family outer membrane protein	NA	NA	NA	NA
WP_015588949.1\|1234007_1234232_+	BolA/IbaG family iron-sulfur metabolism protein	NA	NA	NA	NA
WP_006280013.1\|1234241_1234565_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_015588948.1\|1234759_1236154_-	class II fumarate hydratase	NA	NA	NA	NA
WP_141457376.1\|1236455_1236548_+	hypothetical protein	NA	NA	NA	NA
WP_141456652.1\|1236685_1237452_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_141457197.1\|1237504_1238506_-	GTPase ObgE	NA	NA	NA	NA
WP_015588946.1\|1238493_1239768_-	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	5.2e-137	60.7
WP_015588945.1\|1239772_1241269_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA
WP_015588944.1\|1241295_1241970_+	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	5.2e-19	52.8
WP_141457199.1\|1242839_1244204_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_015588942.1\|1244337_1245825_+	type II secretion system protein	NA	NA	NA	NA
WP_141457201.1\|1245832_1246744_-	P44/Msp2 family outer membrane protein	NA	NA	NA	NA
WP_015588940.1\|1246811_1248038_-\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
WP_015588939.1\|1248427_1249897_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_038198869.1\|1250756_1251041_+\|transposase	transposase	NA	NA	NA	NA
WP_095866567.1\|1251062_1251404_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	7.2e-09	42.5
WP_167482808.1\|1251488_1251653_+	hypothetical protein	NA	NA	NA	NA
WP_141457203.1\|1251642_1251795_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_141457339.1\|1251901_1253230_+\|transposase	IS4-like element ISWosp9 family transposase	NA	NA	NA	NA
WP_015589211.1\|1253545_1254814_+\|tRNA	proline--tRNA ligase	A0A1V0SEQ8	Hokovirus	4.0e-12	21.7
WP_007549151.1\|1254810_1255167_+	holo-[acyl-carrier-protein] synthase	NA	NA	NA	NA
WP_041573531.1\|1255527_1257024_+	cation:proton antiporter	NA	NA	NA	NA
WP_015589213.1\|1257020_1257674_-	type IV secretion system protein VirB8	NA	NA	NA	NA
WP_015589214.1\|1257742_1258537_-	hypothetical protein	NA	NA	NA	NA
WP_141457205.1\|1258610_1259432_-	DNA polymerase III subunit delta'	A0A1U9WR92	Streptococcus_virus	2.8e-06	22.6
WP_141457207.1\|1259449_1260037_-	threonylcarbamoyl-AMP synthase	A0A291ATS8	Pandoravirus	3.4e-14	27.6
WP_015589217.1\|1260155_1260626_-	hypothetical protein	NA	NA	NA	NA
WP_006280293.1\|1260701_1261586_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_141457209.1\|1261582_1262413_-	hypothetical protein	A0A1B2LRR2	Wolbachia_phage	1.6e-54	39.0
WP_015589220.1\|1262709_1264731_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA
WP_007549783.1\|1265483_1265771_+	hypothetical protein	NA	NA	NA	NA
WP_010962863.1\|1265786_1266362_-	hypothetical protein	NA	NA	NA	NA
WP_015589221.1\|1266445_1266781_-	divalent-cation tolerance protein CutA	NA	NA	NA	NA
WP_081600764.1\|1267108_1267744_-\|transposase	transposase	NA	NA	NA	NA
WP_141457211.1\|1267727_1268027_-\|transposase	transposase	NA	NA	NA	NA
WP_006279849.1\|1270686_1271721_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_015589224.1\|1271723_1272596_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_015589225.1\|1272599_1274093_+\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	1.5e-18	27.2

DBSCAN-SWA_10

1286829 : 1348616

Prochlorococcus_phage(25.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081600786.1\|1286829_1287126_-\|transposase	transposase	NA	NA	NA	NA
WP_065095234.1\|1288098_1288317_+\|transposase	transposase	NA	NA	NA	NA
WP_141456652.1\|1289434_1290200_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_141457221.1\|1291364_1292708_+	DNA repair protein RadA	NA	NA	NA	NA
WP_015589234.1\|1292694_1293606_-	signal recognition particle-docking protein FtsY	D6PHS7	uncultured_phage	9.6e-16	36.8
WP_007548853.1\|1293809_1294193_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.6e-52	79.0
WP_015589236.1\|1294198_1294612_+	iron-sulfur cluster assembly accessory protein	A0A0P0CQC4	Ostreococcus_lucimarinus_virus	1.4e-14	34.4
WP_015589237.1\|1294604_1295063_+	hypothetical protein	NA	NA	NA	NA
WP_141457223.1\|1295040_1296789_+	Fe-S protein assembly chaperone HscA	F2Y2E1	Organic_Lake_phycodnavirus	1.9e-89	36.4
WP_010962911.1\|1296796_1297543_-	signal peptidase I	NA	NA	NA	NA
WP_015589239.1\|1298492_1299380_-	aspartate carbamoyltransferase catalytic subunit	A7RB08	Paramecium_bursaria_Chlorella_virus	1.4e-27	32.5
WP_141457225.1\|1299600_1300626_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_141456652.1\|1302350_1303116_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_007548764.1\|1304259_1304667_-\|transposase	transposase	NA	NA	NA	NA
WP_010082383.1\|1304686_1304887_-	hypothetical protein	NA	NA	NA	NA
WP_015589241.1\|1305897_1307451_+	UDP-N-acetylmuramoylalanine--D-glutamate ligase	NA	NA	NA	NA
WP_010082414.1\|1307457_1308048_+	COQ9 family protein	NA	NA	NA	NA
WP_006279274.1\|1308052_1308385_+	hypothetical protein	NA	NA	NA	NA
WP_141457227.1\|1308342_1308891_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_010082417.1\|1309013_1309646_-	hypothetical protein	NA	NA	NA	NA
WP_141457229.1\|1309635_1313196_-	type IV secretion system protein	NA	NA	NA	NA
WP_141457231.1\|1313285_1316231_-	type IV secretion system protein	NA	NA	NA	NA
WP_141457233.1\|1316227_1318615_-	type IV secretion system protein	NA	NA	NA	NA
WP_141457235.1\|1318624_1321189_-	conjugal transfer protein TraH	NA	NA	NA	NA
WP_010962886.1\|1321181_1323587_-	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
WP_141457237.1\|1323596_1323893_-	type IV secretion system protein VirB3	NA	NA	NA	NA
WP_015589250.1\|1324001_1325537_+\|tRNA	lysine--tRNA ligase	NA	NA	NA	NA
WP_077188400.1\|1326197_1326281_-	hypothetical protein	NA	NA	NA	NA
WP_153801319.1\|1326244_1326388_-	hypothetical protein	NA	NA	NA	NA
WP_141457239.1\|1326574_1329208_-\|tRNA	alanine--tRNA ligase	A0A2K9L1X7	Tupanvirus	6.9e-75	37.2
WP_015589252.1\|1329373_1329817_+	PAS domain-containing protein	NA	NA	NA	NA
WP_015589253.1\|1329915_1330122_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_015589254.1\|1330142_1330508_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_015589255.1\|1330520_1331420_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	1.1e-11	38.9
WP_141457241.1\|1331500_1333012_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	1.1e-64	45.2
WP_015589257.1\|1333712_1335233_+	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
WP_141457243.1\|1335272_1336253_-	ACP S-malonyltransferase	NA	NA	NA	NA
WP_007548602.1\|1336381_1336585_+	50S ribosomal protein L31	NA	NA	NA	NA
WP_141457245.1\|1336623_1337418_+	NAD kinase	NA	NA	NA	NA
WP_081600790.1\|1337350_1337593_-	hypothetical protein	NA	NA	NA	NA
WP_141456652.1\|1338050_1338817_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_141457247.1\|1340981_1343255_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
WP_006279944.1\|1343269_1343542_-	30S ribosomal protein S15	NA	NA	NA	NA
WP_012673289.1\|1343554_1343815_-	hypothetical protein	NA	NA	NA	NA
WP_012673282.1\|1344113_1344461_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_015589262.1\|1344468_1345509_+	hypothetical protein	NA	NA	NA	NA
WP_015589263.1\|1345492_1345879_+	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
WP_141456652.1\|1347850_1348616_+\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_11

1377923 : 1418857

uncultured_Mediterranean_phage(16.67%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022626382.1\|1377923_1378271_-\|transposase	transposase	NA	NA	NA	NA
WP_141457261.1\|1378448_1380062_-	hypothetical protein	NA	NA	NA	NA
WP_141457211.1\|1381878_1382178_+\|transposase	transposase	NA	NA	NA	NA
WP_081600764.1\|1382161_1382797_+\|transposase	transposase	NA	NA	NA	NA
WP_006279362.1\|1383295_1383838_-	demethoxyubiquinone hydroxylase family protein	NA	NA	NA	NA
WP_015589379.1\|1383812_1384334_-	disulfide bond formation protein B	NA	NA	NA	NA
WP_141457263.1\|1384330_1385656_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_141457265.1\|1385787_1385997_+	hypothetical protein	NA	NA	NA	NA
WP_141457267.1\|1387446_1387839_-	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_015589376.1\|1387945_1388593_+	heme exporter protein CcmB	NA	NA	NA	NA
WP_012673367.1\|1389069_1389735_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_015589375.1\|1389874_1391527_+	30S ribosomal protein S1	NA	NA	NA	NA
WP_141457269.1\|1391556_1391835_+	integration host factor subunit beta	NA	NA	NA	NA
WP_010082086.1\|1391907_1392234_+	cell division protein ZapA	NA	NA	NA	NA
WP_006279484.1\|1392208_1392487_-	succinate dehydrogenase assembly factor 2	NA	NA	NA	NA
WP_141457271.1\|1392586_1393705_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_015589374.1\|1393713_1396050_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_077188197.1\|1396050_1396602_+	OmpH family outer membrane protein	NA	NA	NA	NA
WP_006279640.1\|1396606_1397038_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_141457273.1\|1397083_1399966_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_141456652.1\|1399985_1400752_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_141457275.1\|1401123_1402683_+	cation:proton antiporter	NA	NA	NA	NA
WP_141457276.1\|1402667_1404011_+	signal recognition particle protein	NA	NA	NA	NA
WP_141457278.1\|1405308_1406061_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.6e-24	29.3
WP_015589368.1\|1406085_1407309_-\|tRNA	histidine--tRNA ligase	A0A2I2L577	Orpheovirus	4.7e-26	27.4
WP_015589367.1\|1407305_1407878_-	NifU family protein	A0A218MN08	uncultured_virus	5.6e-06	32.9
WP_167482810.1\|1407939_1408299_+	DnaJ domain-containing protein	NA	NA	NA	NA
WP_070357063.1\|1408318_1409812_-	N-acetylmuramoyl-L-alanine amidase	A0A1W6DX33	Sphingobium_phage	3.5e-07	37.8
WP_006280242.1\|1410190_1411420_+	cytochrome b/b6	NA	NA	NA	NA
WP_010963022.1\|1411788_1412547_+	cytochrome c1	NA	NA	NA	NA
WP_007550541.1\|1412831_1412984_+\|transposase	transposase	NA	NA	NA	NA
WP_141457280.1\|1413025_1413763_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_041573541.1\|1413851_1415009_-	DNA polymerase III subunit beta	R9TRR6	Rhizobium_phage	8.0e-52	36.4
WP_015589363.1\|1415124_1415622_-	hypothetical protein	NA	NA	NA	NA
WP_141457282.1\|1415614_1416508_-	RNA polymerase factor sigma-32	A0A248SJA5	Salicola_phage	4.1e-27	29.9
WP_141457284.1\|1416826_1417528_-	P44/Msp2 family outer membrane protein	NA	NA	NA	NA
WP_081600764.1\|1417908_1418544_-\|transposase	transposase	NA	NA	NA	NA
WP_141457286.1\|1418527_1418857_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP041215.1|WP_006280029.1|1118666_1118852_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_CP041215.1|WP_041573517.1|1118832_1119174_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP041215.1|WP_006280029.1|1118666_1118852_+|hypothetical-protein

1118666_1118852_+

61 aa aa

958315-1132395

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP041215_3	Orphan	3.1\|401880\|39\|NZ_CP041215\|CRT	401880-401918	39	1056819-1056857	0
NZ_CP041215_3	Orphan	3.3\|402034\|41\|NZ_CP041215\|CRT	402034-402074	41	1056890-1056930	0

1. spacer 3.1|401880|39|NZ_CP041215|CRT matches to NZ_CP041215 position: 1056819-1056857, mismatch: 0

cggtatgacggtttgcggcggcatgacctcgtcattccc	CRISPR spacer
cggtatgacggtttgcggcggcatgacctcgtcattccc	Protospacer
***************************************

2. spacer 3.3|402034|41|NZ_CP041215|CRT matches to NZ_CP041215 position: 1056890-1056930, mismatch: 0

cggtatgacggttcgcgcggtggcatgacctcgtcatcccg	CRISPR spacer
cggtatgacggttcgcgcggtggcatgacctcgtcatcccg	Protospacer
*****************************************

NZ_CP041215.1|WP_041573517.1|1118832_1119174_+|hypothetical-protein

1118832_1119174_+

113 aa aa

958315-1132395

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP041215_3	Orphan	3.1\|401880\|39\|NZ_CP041215\|CRT	401880-401918	39	1056819-1056857	0
NZ_CP041215_3	Orphan	3.3\|402034\|41\|NZ_CP041215\|CRT	402034-402074	41	1056890-1056930	0

1. spacer 3.1|401880|39|NZ_CP041215|CRT matches to NZ_CP041215 position: 1056819-1056857, mismatch: 0

cggtatgacggtttgcggcggcatgacctcgtcattccc	CRISPR spacer
cggtatgacggtttgcggcggcatgacctcgtcattccc	Protospacer
***************************************

2. spacer 3.3|402034|41|NZ_CP041215|CRT matches to NZ_CP041215 position: 1056890-1056930, mismatch: 0

cggtatgacggttcgcgcggtggcatgacctcgtcatcccg	CRISPR spacer
cggtatgacggttcgcgcggtggcatgacctcgtcatcccg	Protospacer
*****************************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041215

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information